Citrus Sinensis ID: 040849
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 809 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.959 | 0.768 | 0.448 | 0.0 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.957 | 0.751 | 0.449 | 1e-171 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.974 | 0.768 | 0.460 | 1e-162 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.868 | 0.599 | 0.356 | 1e-102 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.930 | 0.720 | 0.315 | 2e-94 | |
| Q9ZUI0 | 980 | Putative leucine-rich rep | no | no | 0.799 | 0.660 | 0.352 | 1e-93 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.925 | 0.747 | 0.332 | 4e-89 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.861 | 0.620 | 0.331 | 9e-89 | |
| O49545 | 1003 | Leucine-rich repeat recep | no | no | 0.920 | 0.742 | 0.328 | 7e-88 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.935 | 0.675 | 0.296 | 2e-87 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/812 (44%), Positives = 509/812 (62%), Gaps = 36/812 (4%)
Query: 30 SNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQG 89
++ETD+ ALL+FK++V+ D VLSSWN+S C WKGVTC +++RVT L L L L G
Sbjct: 21 TDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGG 80
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
+SP IGNLSFL LDL N F IPQE+G L RL++L + N G IP + +C L
Sbjct: 81 VISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRL 140
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG 209
+LRL N L G VP +LGSL+ L L ++ NN+ G++P+S GNL+ LE L+ S N G
Sbjct: 141 LNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEG 200
Query: 210 QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269
+IP ++QL ++ + N SG P ++YNLSSL N G L DLG LPN
Sbjct: 201 EIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPN 260
Query: 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGN 329
L N+G N FTG IP ++SN S L RL + N +G +P+FGN+ L+ + + N LG+
Sbjct: 261 LLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGS 320
Query: 330 GEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG 389
DLEF+ SL N ++LE LGI N GG LP ++ NLS +L L +G + G+IP
Sbjct: 321 DSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYD 380
Query: 390 LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449
+ NL+NL++L+L+ N +G +P S+G L L+ L L N+ G IP+ IGN+T+L TL
Sbjct: 381 IGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDL 440
Query: 450 DKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPS 509
N EG +P+SLG C +L+ L + +N L GTIP E++ + L + LD+S N L G+LP
Sbjct: 441 SNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQ 499
Query: 510 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLD 569
+ G L+NLG L + +NKLSG++P +LG+C+ +E L + GN F G+IP L G++ +D
Sbjct: 500 DIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP-DLKGLVGVKEVD 558
Query: 570 LSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISE 629
LS N+LSG IP+YF +F L+ LNLSFN+ EG+VP+KG+F N++ VS+ GN++LCGGI
Sbjct: 559 LSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMG 618
Query: 630 LHLSTC---SIKESKQSRSRSLKLIIPIVTGI----LLVTGMSCLIITSWRSKSKRESAT 682
L C + K+ SR K++I + GI LL LI R K+K +
Sbjct: 619 FQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNNP 678
Query: 683 PPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----- 737
PS L ++SY +L AT+GFS N++G+GSFG+VYK +L + + +VAVK
Sbjct: 679 TPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTE--KKVVAVKVLNMQ 736
Query: 738 ---------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPK 782
+ IRHRNLVK++T+C+S+DFQGN+F+AL+YEFM NGSL+ WLHP+
Sbjct: 737 RRGAMKSFMAECESLKDIRHRNLVKLLTACSSIDFQGNEFRALIYEFMPNGSLDMWLHPE 796
Query: 783 P-----EAPRNSNLLQRLSIAVDVASALDYLH 809
R LL+RL+IA+DVAS LDYLH
Sbjct: 797 EVEEIHRPSRTLTLLERLNIAIDVASVLDYLH 828
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 602 bits (1553), Expect = e-171, Method: Compositional matrix adjust.
Identities = 367/817 (44%), Positives = 496/817 (60%), Gaps = 42/817 (5%)
Query: 30 SNETDQLALLEFKAKVTHD-PLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQ 88
SNETD ALLEFK++V+ + EVL+SWN+S FC W GVTC R +RV +L L L
Sbjct: 27 SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLT 86
Query: 89 GSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVN 148
G +SP IGNLSFLR+L+L +NSF + IPQ++G LFRLQ+L + N G+IP ++S+C
Sbjct: 87 GVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSR 146
Query: 149 LESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208
L ++ L N L VP +LGSLSKL L + NNL+G P+S GNL+SL+ L + NQ
Sbjct: 147 LSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMR 206
Query: 209 GQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLP 268
G+IP +++L +M F +N SG P ++YN+SSL N G+L +D G+ LP
Sbjct: 207 GEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLP 266
Query: 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHL 327
NL RL LG NQFTG IP +++N S L R I N SG +P SFG L L W+ I N L
Sbjct: 267 NLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSL 326
Query: 328 GNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIP 387
GN LEF+ ++ N ++LE L + N GG LP ++ NLST L L +G N + G IP
Sbjct: 327 GNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIP 386
Query: 388 SGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447
+ NLV+L+ L LE N +G +P S G L LQ + L N GEIPS GN+T L L
Sbjct: 387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKL 446
Query: 448 SFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTL 507
+ N G IP SLG+C+ L+ L + N L GTIP E++ + SL+ Y+DLS N L G
Sbjct: 447 HLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLA-YIDLSNNFLTGHF 505
Query: 508 PSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIEN 567
P G L+ L L S NKLSG++P ++G C+ +E L M GN F G IP S L ++N
Sbjct: 506 PEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIP-DISRLVSLKN 564
Query: 568 LDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGI 627
+D S NNLSGRIP+Y + L+NLNLS N FEG VP GVF N++AVS+ GN N+CGG+
Sbjct: 565 VDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGV 624
Query: 628 SELHLSTCSIKESKQSRSRSLKLIIPIVTGILLVTGMSCLIIT----SWRSKSKRE---- 679
E+ L C ++ S + R + L + +V+GI + LII W K K++
Sbjct: 625 REMQLKPCIVQASPRKR-KPLSVRKKVVSGICIGIASLLLIIIVASLCWFMKRKKKNNAS 683
Query: 680 SATPPSALLASVL--RVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK 737
P + + +VSY+ L AT FS NLIG+G+FG+V+KG+L ++ LVAVK
Sbjct: 684 DGNPSDSTTLGMFHEKVSYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENK--LVAVK 741
Query: 738 --------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEE 777
+ IRHRNLVK+IT C+S+D +GNDF+ALVYEFM GSL+
Sbjct: 742 VLNLLKHGATKSFMAECETFKGIRHRNLVKLITVCSSLDSEGNDFRALVYEFMPKGSLDM 801
Query: 778 WLHPKP-----EAPRNSNLLQRLSIAVDVASALDYLH 809
WL + + R+ ++L+IA+DVASAL+YLH
Sbjct: 802 WLQLEDLERVNDHSRSLTPAEKLNIAIDVASALEYLH 838
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust.
Identities = 383/831 (46%), Positives = 509/831 (61%), Gaps = 43/831 (5%)
Query: 18 SFSLQSTDY-----MHKSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSP 72
S SL+ +D + + ETD+ ALLEFK++V+ VL SWN S C W GV C
Sbjct: 19 SVSLEHSDMVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGL 78
Query: 73 RHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDN 132
+H+RVT + L L L G +SP +GNLSFLR L+L +N F IP E+G LFRLQ+L + N
Sbjct: 79 KHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSN 138
Query: 133 NTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFG 192
N FGG IP +S+C +L +L L N L VP + GSLSKL L++ NNL+G+ P+S G
Sbjct: 139 NLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLG 198
Query: 193 NLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPV 252
NL+SL++L NQ G+IP +++LK+M F +NK +G P IYNLSSL +
Sbjct: 199 NLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITG 258
Query: 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SF 311
N G+L D G LPNL+ L +G N FTG IP ++SN S L +L IP N +GK+P SF
Sbjct: 259 NSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSF 318
Query: 312 GNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTR 371
G L L + ++ N LGN DL+F+ +L N S+L+ L + N GG LP + NLST+
Sbjct: 319 GRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQ 378
Query: 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFL 431
L L +G N + G+IP G+ NLV+L+ L L N TG++P S+G+L +L+++ L N
Sbjct: 379 LTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLS 438
Query: 432 GEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSS 491
GEIPSS+GN++ L L N EGSIPSSLG C L+ L L N L G+IP E++ L S
Sbjct: 439 GEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPS 498
Query: 492 LSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFF 551
L + L++S N L G L + G LK L LDVS NKLSG+IP +L +C+ LE L + GN F
Sbjct: 499 L-VVLNVSFNLLVGPLRQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSF 557
Query: 552 QGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSN 611
G IP L G+ LDLS+NNLSG IP+Y NF LQNLNLS N+F+G VP +GVF N
Sbjct: 558 VGPIP-DIRGLTGLRFLDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRN 616
Query: 612 SSAVSLDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIPIVTG---ILLVTGMSCLI 668
+SA+S+ GN NLCGGI L L CS++ + R S++ II I L+ C++
Sbjct: 617 TSAMSVFGNINLCGGIPSLQLQPCSVELPR--RHSSVRKIITICVSAVMAALLLLCLCVV 674
Query: 669 ITSW---RSKSKR----ESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVY 721
W R KS R E+ S + + ++SY L+K T GFS NLIG+G+FG+V+
Sbjct: 675 YLCWYKLRVKSVRANNNENDRSFSPVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVF 734
Query: 722 KGILNHDDHETLVAV----KR--------------SIRHRNLVKIITSCASVDFQGNDFK 763
KG L + + V KR IRHRNLVK++T C+S DF+GNDF+
Sbjct: 735 KGFLGSKNKAVAIKVLNLCKRGAAKSFIAECEALGGIRHRNLVKLVTICSSSDFEGNDFR 794
Query: 764 ALVYEFMVNGSLEEWLHPKP-----EAPRNSNLLQRLSIAVDVASALDYLH 809
ALVYEFM NG+L+ WLHP R L RL+IA+DVASAL YLH
Sbjct: 795 ALVYEFMPNGNLDMWLHPDEIEETGNPSRTLGLFARLNIAIDVASALVYLH 845
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 286/803 (35%), Positives = 404/803 (50%), Gaps = 100/803 (12%)
Query: 87 LQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHC 146
L GS+ IG L+ L LDL N +IP++ G L LQ L L N G IP I +C
Sbjct: 204 LTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNC 263
Query: 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
+L L L N+L GK+P +LG+L +L+ L ++ N L+ IPSS L+ L L S N
Sbjct: 264 SSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENH 323
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFT 266
VG I + + L+ + + N +GE P SI NL +L N + G LP+DLG
Sbjct: 324 LVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL- 382
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMN 325
L NL L+ +N TGPIP+SISN + L L + N +G++P FG ++ L ++SI N
Sbjct: 383 LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRN 441
Query: 326 HLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGN 385
H DD+ N S LE L + NN G L +G L +LRIL+V N L G
Sbjct: 442 HFTGEIPDDI------FNCSNLETLSVADNNLTGTLKPLIGKLQ-KLRILQVSYNSLTGP 494
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQ------------------------ 421
IP + NL +L L L N FTGRIP + +L LQ
Sbjct: 495 IPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLS 554
Query: 422 RLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGT 481
L L NKF G+IP+ L L LS N GSIP+SL L +S+N LTGT
Sbjct: 555 VLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGT 614
Query: 482 IPTEVIG-LSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 540
IP E++ L ++ +YL+ S N L GT+P G L+ + +D+S N SG IP SL +C
Sbjct: 615 IPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKN 674
Query: 541 LEQL-----------------GMN--------GNFFQGNIPSSFSSLRGIENLDLSRNNL 575
+ L GM+ N F G IP SF ++ + +LDLS NNL
Sbjct: 675 VFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNL 734
Query: 576 SGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTC 635
+G IP+ N L++L L+ N+ +G VP GVF N +A L GN +LCG S+ L C
Sbjct: 735 TGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCG--SKKPLKPC 792
Query: 636 SIKESKQSRSRSLKLIIPIV-------TGILLVTGMSCLIITSWRSKSKRESATPPSALL 688
+IK+ S+ ++I+ I+ +LLV ++C + ++ ES+ P
Sbjct: 793 TIKQKSSHFSKRTRVILIILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSA 852
Query: 689 ASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------- 737
+ R + L +ATD F+ N+IG+ S +VYKG L + T++AVK
Sbjct: 853 LKLKRFEPKELEQATDSFNSANIIGSSSLSTVYKGQL---EDGTVIAVKVLNLKEFSAES 909
Query: 738 -----------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAP 786
++HRNLVKI+ ++ KALV FM NG+LE+ +H AP
Sbjct: 910 DKWFYTEAKTLSQLKHRNLVKIL----GFAWESGKTKALVLPFMENGNLEDTIHGSA-AP 964
Query: 787 RNSNLLQRLSIAVDVASALDYLH 809
S LL+++ + V +AS +DYLH
Sbjct: 965 IGS-LLEKIDLCVHIASGIDYLH 986
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 272/862 (31%), Positives = 407/862 (47%), Gaps = 109/862 (12%)
Query: 37 ALLEFKAKVTHDPLEV-LSSW---NYSRHFCQWKGVTCS---------------PRHQRV 77
ALL++K+ T+ LSSW N S W GV CS +
Sbjct: 53 ALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIRLNLTNTGIEGTFEDF 112
Query: 78 TALLLPSLLL--------QGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLW 129
LP+L G++SP G S L DL N EIP E+G L L L
Sbjct: 113 PFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLH 172
Query: 130 LDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPS 189
L N G IP I + + + N L G +P G+L+KL L + N+LSG IPS
Sbjct: 173 LVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPS 232
Query: 190 SFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFE 249
GNL +L L N G+IP + LK + + N+LSGEIP I N+++L+
Sbjct: 233 EIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLS 292
Query: 250 FPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP 309
N+L G +PS LG + L L+L NQ G IP + ++ L I N +G VP
Sbjct: 293 LHTNKLTGPIPSTLG-NIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVP 351
Query: 310 -SFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNL 368
SFG L L+W+ + N L + N++ L +L ++ NNF G LP+ +
Sbjct: 352 DSFGKLTALEWLFLRDNQLSG------PIPPGIANSTELTVLQLDTNNFTGFLPDTICR- 404
Query: 369 STRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIG--------DL--- 417
+L L + +N G +P LR+ +L R+ +GN F+G I + G DL
Sbjct: 405 GGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNN 464
Query: 418 -------------HKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGK 464
KL L N G IP I N+T L L N + G +P S+
Sbjct: 465 NFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISN 524
Query: 465 CQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSE 524
+ L L+ N L+G IP+ + L++L YLDLS N+ + +P L L +++S
Sbjct: 525 INRISKLQLNGNRLSGKIPSGIRLLTNLE-YLDLSSNRFSSEIPPTLNNLPRLYYMNLSR 583
Query: 525 NKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFE 584
N L IP L +L+ L ++ N G I S F SL+ +E LDLS NNLSG+IP F+
Sbjct: 584 NDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFK 643
Query: 585 NFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELH-LSTCSIKESKQS 643
+ L L ++++S N+ +G +P F N+ + +GN +LCG ++ L CSI SK+S
Sbjct: 644 DMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKS 703
Query: 644 ---RSRSLKLIIPIVTGILLVTGMSCLIITSWRSKSKR-------ESATPPSALLASVLR 693
R+ + +++PI+ I++++ + + I +R ++K+ ES ++ + +
Sbjct: 704 HKDRNLIIYILVPIIGAIIILSVCAGIFIC-FRKRTKQIEEHTDSESGGETLSIFSFDGK 762
Query: 694 VSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR--------------- 738
V YQ + KAT F + LIG G G VYK L + ++AVK+
Sbjct: 763 VRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPN----AIMAVKKLNETTDSSISNPSTK 818
Query: 739 -----------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPR 787
IRHRN+VK+ C+ + N F LVYE+M GSL + L EA +
Sbjct: 819 QEFLNEIRALTEIRHRNVVKLFGFCS---HRRNTF--LVYEYMERGSLRKVLENDDEA-K 872
Query: 788 NSNLLQRLSIAVDVASALDYLH 809
+ +R+++ VA AL Y+H
Sbjct: 873 KLDWGKRINVVKGVAHALSYMH 894
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (884), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 253/718 (35%), Positives = 373/718 (51%), Gaps = 71/718 (9%)
Query: 152 LRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNL-SSLEVLSASANQFVGQ 210
L + +L G++ + +L+ L L + N G+IP G+L +L+ LS S N G
Sbjct: 71 LDISGRDLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGN 130
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIY---NLSSLNYFEFPVNQLQGSLPSDLGFTL 267
IP+ L L R+ ++ G N+L+G IP ++ + SSL Y + N L G +P + L
Sbjct: 131 IPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHL 190
Query: 268 PNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS--FGNLHKLQWVSISMN 325
L L L N+ TG +P+S+SN+++L + + N SG++PS + +LQ++ +S N
Sbjct: 191 KELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYN 250
Query: 326 H-LGNGEKDDLE-FVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLF 383
H + + +LE F SL N+S L+ L + N+ GG + +V +LS L + + N++
Sbjct: 251 HFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIH 310
Query: 384 GNIP------------------------SGLRNLVNLERLLLEGNQFTGRIPGSIGDLHK 419
G+IP L L LER+ L N TG IP +GD+ +
Sbjct: 311 GSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPR 370
Query: 420 LQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT 479
L L + N G IP S GNL+ L L N L G++P SLGKC NL +L LS+NNLT
Sbjct: 371 LGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLT 430
Query: 480 GTIPTEVIG-LSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSC 538
GTIP EV+ L +L +YL+LS N L+G +P + + +D+S N+LSG+IP LGSC
Sbjct: 431 GTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSC 490
Query: 539 VRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNH 598
+ LE L ++ N F +PSS L ++ LD+S N L+G IP F+ L++LN SFN
Sbjct: 491 IALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNL 550
Query: 599 FEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIPIVTGI 658
G V KG FS + S G+ LCG I + C K+ K L+ I T +
Sbjct: 551 LSGNVSDKGSFSKLTIESFLGDSLLCGSIKGMQ--ACK-KKHKYPSVLLPVLLSLIATPV 607
Query: 659 LLVTGMSCLIITSW------RSKSKRESATPPSALLASVLRVSYQNLFKATDGFSLENLI 712
L V G + + + +K + E + R+SYQ L AT GF+ +LI
Sbjct: 608 LCVFGYPLVQRSRFGKNLTVYAKEEVEDEEKQNQNDPKYPRISYQQLIAATGGFNASSLI 667
Query: 713 GAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITS 751
G+G FG VYKG+L ++ T VAVK + RHRNL++IIT+
Sbjct: 668 GSGRFGHVYKGVLRNN---TKVAVKVLDPKTALEFSGSFKRECQILKRTRHRNLIRIITT 724
Query: 752 CASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C+ F ALV M NGSLE L+P + +N +L+Q ++I DVA + YLH
Sbjct: 725 CSKPGFN-----ALVLPLMPNGSLERHLYPGEYSSKNLDLIQLVNICSDVAEGIAYLH 777
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (845), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 269/808 (33%), Positives = 399/808 (49%), Gaps = 59/808 (7%)
Query: 33 TDQLALLEFKAKVT---HDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQG 89
T+ ALL K+ T H PL L+SWN S FC W GVTC + VT+L L L L G
Sbjct: 26 TELHALLSLKSSFTIDEHSPL--LTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSG 83
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISH-CVN 148
+LS + +L L+ L L N IP +I L+ L+ L L NN F G PD +S VN
Sbjct: 84 TLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVN 143
Query: 149 LESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208
L L L N L G +P L +L++LR L + N SG+IP+++G LE L+ S N+
Sbjct: 144 LRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELT 203
Query: 209 GQIPKTLSQLKRMR--FIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFT 266
G+IP + L +R +IG+ N +P I NLS L F+ L G +P ++G
Sbjct: 204 GKIPPEIGNLTTLRELYIGY-YNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIG-K 261
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMN 325
L L+ L L N FTG I + S L + + N F+G++P SF L L +++ N
Sbjct: 262 LQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRN 321
Query: 326 HLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGN 385
L EF+ + LE+L + NNF G +P+ +G + RL IL + +N+L G
Sbjct: 322 KLYGAIP---EFIGEM---PELEVLQLWENNFTGSIPQKLGE-NGRLVILDLSSNKLTGT 374
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
+P + + L L+ GN G IP S+G L R+ + N G IP + L L
Sbjct: 375 LPPNMCSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLS 434
Query: 446 TLSFDKNMLEGSIPSSLGKCQ-NLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLN 504
+ N L G +P S G +L + LSNN L+G++P + LS + L L N+ +
Sbjct: 435 QVELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLL-LDGNKFS 493
Query: 505 GTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRG 564
G++P G L+ L LD S N SG I + C L + ++ N G+IP+ + ++
Sbjct: 494 GSIPPEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKI 553
Query: 565 IENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLC 624
+ L+LSRN+L G IP + L +++ S+N+ G VP G FS + S GN +LC
Sbjct: 554 LNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLC 613
Query: 625 GGISELHLSTCSIKESKQSRSRSLKLIIPIVTGILLV-TGMSCLIITSWRSKSKRESATP 683
G +L C K + QS + L ++ + L+ M I+ +++S R ++
Sbjct: 614 GP----YLGPCG-KGTHQSHVKPLSATTKLLLVLGLLFCSMVFAIVAIIKARSLRNASEA 668
Query: 684 PSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR----- 738
+ L + R+ + D +N+IG G G VYKG + D LVAVKR
Sbjct: 669 KAWRLTAFQRLDF-TCDDVLDSLKEDNIIGKGGAGIVYKGTMPKGD---LVAVKRLATMS 724
Query: 739 -----------------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP 781
IRHR++V+++ C++ ++ LVYE+M NGSL E LH
Sbjct: 725 HGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSN-----HETNLLVYEYMPNGSLGEVLHG 779
Query: 782 KPEAPRNSNLLQRLSIAVDVASALDYLH 809
K + N R IA++ A L YLH
Sbjct: 780 KKGGHLHWN--TRYKIALEAAKGLCYLH 805
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 257/775 (33%), Positives = 366/775 (47%), Gaps = 78/775 (10%)
Query: 87 LQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHC 146
L G L +GNL+ L N F IP EIG L+ L L N G++P I
Sbjct: 193 LTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGML 252
Query: 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
V L+ + L N+ G +P+ +G+L+ L TLA++ N+L G IPS GN+ SL+ L NQ
Sbjct: 253 VKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQ 312
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFT 266
G IPK L +L ++ I F N LSGEIP + +S L N+L G +P++L
Sbjct: 313 LNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELS-K 371
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWV-SISMN 325
L NL +L+L N TGPIP N + + +L + N SG +P L+ WV S N
Sbjct: 372 LRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSEN 431
Query: 326 HLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGN 385
L + + S L LL + N G +P V + L+ LRV N+L G
Sbjct: 432 QLSG------KIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQ-LRVVGNRLTGQ 484
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
P+ L LVNL + L+ N+F+G +P IG KLQRL L N+F +P+ I L+ L+
Sbjct: 485 FPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLV 544
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG 505
T + N L G IPS + C+ L L LS N+ G++P E+ L L I L LS+N+ +G
Sbjct: 545 TFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEI-LRLSENRFSG 603
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNF--FQGNIPSSFSSLR 563
+P G L +L L + N SG IP LG L Q+ MN ++ F G IP +L
Sbjct: 604 NIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSL-QIAMNLSYNDFSGEIPPEIGNLH 662
Query: 564 GIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNL 623
+ L L+ N+LSG IP FEN L N S+N+ G++P +F N + S GN L
Sbjct: 663 LLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGL 722
Query: 624 CGGISELHLSTCSIKESKQSRSRSLK----------------------LIIPIVTGILLV 661
CGG HL +C S SLK L+I IV L
Sbjct: 723 CGG----HLRSCDPSHSSWPHISSLKAGSARRGRIIIIVSSVIGGISLLLIAIVVHFL-- 776
Query: 662 TGMSCLIITSWRSKSKRESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVY 721
+ + T+ K R + +++ +AT GF ++G G+ G+VY
Sbjct: 777 --RNPVEPTAPYVHDKEPFFQESDIYFVPKERFTVKDILEATKGFHDSYIVGRGACGTVY 834
Query: 722 KGILNHDDHETLVAVKR---------------------------SIRHRNLVKIITSCAS 754
K ++ +AVK+ IRHRN+V++ + C
Sbjct: 835 KAVMPSGK---TIAVKKLESNREGNNNNSNNTDNSFRAEILTLGKIRHRNIVRLYSFCYH 891
Query: 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
QG++ L+YE+M GSL E LH + + R +IA+ A L YLH
Sbjct: 892 ---QGSNSNLLLYEYMSRGSLGELLHGGKS--HSMDWPTRFAIALGAAEGLAYLH 941
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (834), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 266/810 (32%), Positives = 402/810 (49%), Gaps = 65/810 (8%)
Query: 37 ALLEFKAKVT---HDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSP 93
ALL K +T D LSSW S FC W GVTC + VT+L L L L G+LSP
Sbjct: 28 ALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSP 87
Query: 94 HIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISH-CVNLESL 152
+ +L L+ L L N IP EI L L+ L L NN F G PD IS VNL L
Sbjct: 88 DVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVL 147
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
+ N L G +P + +L++LR L + N +G+IP S+G+ +E L+ S N+ VG+IP
Sbjct: 148 DVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIP 207
Query: 213 KTLSQLKRMR--FIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
+ L +R +IG+ N +P I NLS L F+ L G +P ++G L L
Sbjct: 208 PEIGNLTTLRELYIGY-YNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIG-KLQKL 265
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHLGN 329
+ L L N F+GP+ + S L + + N F+G++P SF L L +++ N L +
Sbjct: 266 DTLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKL-H 324
Query: 330 GEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG 389
GE EF+ L LE+L + NNF G +P+ +G + +L ++ + +N+L G +P
Sbjct: 325 GEIP--EFIGDL---PELEVLQLWENNFTGSIPQKLGE-NGKLNLVDLSSNKLTGTLPPN 378
Query: 390 LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449
+ + LE L+ GN G IP S+G L R+ + N G IP + L L +
Sbjct: 379 MCSGNKLETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVEL 438
Query: 450 DKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPS 509
N L G +P + G NL + LSNN L+G +P + + + L L N+ G +PS
Sbjct: 439 QDNYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLL-LDGNKFQGPIPS 497
Query: 510 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLD 569
G L+ L +D S N SG I + C L + ++ N G IP+ ++++ + L+
Sbjct: 498 EVGKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLN 557
Query: 570 LSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISE 629
LSRN+L G IP + L +L+ S+N+ G VP G FS + S GN +LCG
Sbjct: 558 LSRNHLVGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGP--- 614
Query: 630 LHLSTCS---IKESKQSRSR-----SLKLIIPIVTGILLVTGMSCLIITSWRSKSKRESA 681
+L C K QS S+ S+KL++ + + + II +++S ++++
Sbjct: 615 -YLGPCKDGVAKGGHQSHSKGPLSASMKLLLVLGLLVCSIAFAVVAII---KARSLKKAS 670
Query: 682 TPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR--- 738
+ L + R+ + D +N+IG G G VYKG++ + D LVAVKR
Sbjct: 671 ESRAWRLTAFQRLDF-TCDDVLDSLKEDNIIGKGGAGIVYKGVMPNGD---LVAVKRLAA 726
Query: 739 -------------------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL 779
IRHR++V+++ C++ ++ LVYE+M NGSL E L
Sbjct: 727 MSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSN-----HETNLLVYEYMPNGSLGEVL 781
Query: 780 HPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
H K + + R IA++ A L YLH
Sbjct: 782 HGKKGGHLHWD--TRYKIALEAAKGLCYLH 809
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 282/951 (29%), Positives = 425/951 (44%), Gaps = 194/951 (20%)
Query: 37 ALLEFKAKVTHDPLEVLSSW------NYSRHFCQWKGVTCSPR----------------H 74
ALL++K+ T+ LSSW N S W GV+C+ R
Sbjct: 36 ALLKWKSTFTNS--SKLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGTF 93
Query: 75 QRVTALLLPSL--------LLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQ 126
Q + L +L LL G++ P GNLS L DL N EI +G L L
Sbjct: 94 QDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLT 153
Query: 127 FLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQ 186
L+L N IP + + ++ L L N+L G +P LG+L L L ++ N L+G
Sbjct: 154 VLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGV 213
Query: 187 IPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLN 246
IP GN+ S+ L+ S N+ G IP TL LK + + N L+G IP I N+ S+
Sbjct: 214 IPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMT 273
Query: 247 YFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG 306
N+L GS+PS LG L NL L+L +N TG IP + N ++ L + N +G
Sbjct: 274 NLALSQNKLTGSIPSSLG-NLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTG 332
Query: 307 KVP-SFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVN--ASRLELLGININNFG----- 358
+P S GNL L + + N+L +L + S+++ + +L G ++FG
Sbjct: 333 SIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNL 392
Query: 359 -----------GMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFT 407
G++P+ +GN+ + + L + N+L G++P N LE L L N +
Sbjct: 393 TYLYLYLNYLTGVIPQELGNMESMIN-LDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLS 451
Query: 408 GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQN 467
G IP + + L L L N F G P ++ L +S D N LEG IP SL C++
Sbjct: 452 GAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKS 511
Query: 468 LI---LLG---------------------------------------------LSNNNLT 479
LI LG +SNNN+T
Sbjct: 512 LIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNIT 571
Query: 480 GTIPTEVIGLSSLSIYLDLSQ------------------------NQLNGTLPSNFGILK 515
G IPTE+ ++ L + LDLS NQL+G +P+ L
Sbjct: 572 GAIPTEIWNMTQL-VELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLT 630
Query: 516 NLGVLDVSENKLSGEIPNSLGSCVRLE-----------------------QLGMNGNFFQ 552
NL LD+S N S EIP + S ++L QL ++ N
Sbjct: 631 NLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRLSKLTQLTQLDLSHNQLD 690
Query: 553 GNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNS 612
G IPS SSL+ ++ LDLS NNLSG IP FE + L N+++S N EG +P F +
Sbjct: 691 GEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKA 750
Query: 613 SAVSLDGNDNLCGGISELHLSTC-SIKESKQSRSRSLKLIIPIVTGILLVTGMSCLIITS 671
+A +L+ N LC I + L C +K+ K++ + + +++PI+ G+L++ + T
Sbjct: 751 TADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILVPIL-GVLVILSICANTFTY 809
Query: 672 WRSKSKRE---SATPPSALLASVLRVS----YQNLFKATDGFSLENLIGAGSFGSVYKGI 724
K K + + P + S+ V YQ++ ++T+ F +LIG G + VY+
Sbjct: 810 CIRKRKLQNGRNTDPETGENMSIFSVDGKFKYQDIIESTNEFDPTHLIGTGGYSKVYRAN 869
Query: 725 LNHDDHETLVAVKR--------------------------SIRHRNLVKIITSCASVDFQ 758
L +T++AVKR IRHRN+VK+ C+ +
Sbjct: 870 L----QDTIIAVKRLHDTIDEEISKPVVKQEFLNEVKALTEIRHRNVVKLFGFCS---HR 922
Query: 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+ F L+YE+M GSL + L EA R + +R+++ VA AL Y+H
Sbjct: 923 RHTF--LIYEYMEKGSLNKLLANDEEAKRLT-WTKRINVVKGVAHALSYMH 970
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 809 | ||||||
| 255577438 | 1028 | receptor-kinase, putative [Ricinus commu | 0.957 | 0.753 | 0.546 | 0.0 | |
| 147853780 | 1904 | hypothetical protein VITISV_030954 [Viti | 0.957 | 0.407 | 0.544 | 0.0 | |
| 359482058 | 1040 | PREDICTED: probable LRR receptor-like se | 0.957 | 0.745 | 0.544 | 0.0 | |
| 224127492 | 1022 | predicted protein [Populus trichocarpa] | 0.976 | 0.772 | 0.532 | 0.0 | |
| 224081190 | 1011 | predicted protein [Populus trichocarpa] | 0.975 | 0.780 | 0.532 | 0.0 | |
| 224090977 | 1034 | predicted protein [Populus trichocarpa] | 0.991 | 0.775 | 0.529 | 0.0 | |
| 224097750 | 1023 | predicted protein [Populus trichocarpa] | 0.955 | 0.755 | 0.542 | 0.0 | |
| 255581223 | 1015 | receptor-kinase, putative [Ricinus commu | 0.955 | 0.761 | 0.531 | 0.0 | |
| 224113117 | 1006 | predicted protein [Populus trichocarpa] | 0.955 | 0.768 | 0.542 | 0.0 | |
| 224097752 | 1025 | predicted protein [Populus trichocarpa] | 0.957 | 0.756 | 0.531 | 0.0 |
| >gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/811 (54%), Positives = 560/811 (69%), Gaps = 36/811 (4%)
Query: 29 KSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQ 88
+ NETD+L+LL FKA +T DPL +LSSWN S HFC+W G+TC RHQRV + L S L
Sbjct: 30 RGNETDRLSLLAFKAHITDDPLHILSSWNESLHFCKWSGITCGSRHQRVIEIDLESSRLS 89
Query: 89 GSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVN 148
GSL+ IGNLSFLRVL+L+NNS + IPQEIG LFRL+ L L N+F G+IP NIS+C N
Sbjct: 90 GSLTAFIGNLSFLRVLNLQNNSLSHYIPQEIGRLFRLRTLILRRNSFSGEIPVNISYCSN 149
Query: 149 LESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208
L +LRLG N L GK+P +L SLSKL+ N L+G+I SF NLSSLE++ + N F
Sbjct: 150 LLTLRLGRNNLTGKLPAELKSLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTRNNFH 209
Query: 209 GQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLP 268
G+IP ++ QLK ++ G + SG IP SI+NLSSL P+NQL G+LP DLG +LP
Sbjct: 210 GEIPNSIGQLKSLQTFSLGGSNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLGQSLP 269
Query: 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLG 328
LE L L N+F+G IP +ISNAS+L+ L + N F+GKVPS LH L ++ I N+LG
Sbjct: 270 KLEVLRLYANKFSGSIPPTISNASNLVALDVSQNNFTGKVPSLARLHNLSYIGIHKNNLG 329
Query: 329 NGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPS 388
NGE DDL F+ +L N + LE+L I NN GG+LPE + N ST+L + G N++ G IPS
Sbjct: 330 NGEDDDLSFLYTLANNTNLEILAITENNLGGVLPEMLSNFSTKLVHMAFGRNKIRGRIPS 389
Query: 389 GLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLS 448
+ NL+ LE L E N+ TG IP S+G L L +L L N G IPSS+GN+T L T+S
Sbjct: 390 EIDNLIRLEALGFERNELTGSIPSSLGKLKNLIKLYLNDNNISGSIPSSLGNITSLSTIS 449
Query: 449 FDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLP 508
N LEGSIPSSLG CQ ++L+ LS NNL+GTIP E+I + SLSI LDLS+NQ G+LP
Sbjct: 450 LKVNNLEGSIPSSLGNCQQMLLMDLSRNNLSGTIPKELISIPSLSISLDLSENQFTGSLP 509
Query: 509 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENL 568
G L NLG LDVS+NKLSGEIP SLGSC RLE L + GN FQG IP S SSLRGI +L
Sbjct: 510 MEVGGLVNLGYLDVSKNKLSGEIPKSLGSCTRLETLYLQGNAFQGTIPVSLSSLRGINDL 569
Query: 569 DLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGIS 628
+LS NNL+G+IP +F F L+ L+LS+N FEGEVP +GVF N+SA S+ GN NLCGGI
Sbjct: 570 NLSHNNLTGQIPNFFAEFKSLEKLDLSYNDFEGEVPAEGVFKNASAFSISGNKNLCGGIP 629
Query: 629 ELHLSTCSIKES-KQSRSRSLKLII----PIVTGILLVTGMSCLIITSWRSKSKRESATP 683
E++L C++ +S K S L+LII V G+LL+T S L+ + + +E++
Sbjct: 630 EINLPRCTLNKSMKPKTSHKLRLIIVVACCGVVGVLLLT--SALLFCCLKMRKNKEASG- 686
Query: 684 PSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------ 737
S+L +VSYQNL KATDGFS NLIGAGSFGSVYKGIL D ET++AVK
Sbjct: 687 -SSLDIFFQKVSYQNLLKATDGFSSANLIGAGSFGSVYKGILAPD--ETIIAVKVLNLQH 743
Query: 738 --------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-- 781
++RHRNLVK++T+C+S DF+ NDFKALVYE+MVNGSLEEWLHP
Sbjct: 744 KGASRSFMTECQALANVRHRNLVKVLTACSSSDFEENDFKALVYEYMVNGSLEEWLHPTQ 803
Query: 782 ---KPEAPRNSNLLQRLSIAVDVASALDYLH 809
+ + PR +L++RLSI++DVASALDYLH
Sbjct: 804 NPDQDQPPRILSLIERLSISIDVASALDYLH 834
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/808 (54%), Positives = 559/808 (69%), Gaps = 33/808 (4%)
Query: 31 NETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGS 90
NETD+LALL KA++T DPL + +SWN S HFC W GVTC RHQRV L L SL L GS
Sbjct: 68 NETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHLVGS 127
Query: 91 LSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLE 150
LSP IGNL+FL L+L+ N+F +IPQE+G L RL+ L L NN+F G+IP N+S C NL
Sbjct: 128 LSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLV 187
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
RLGFN L+G++P LGS K+ + +HYNNL+G +P S GNL+S++ LS + N G
Sbjct: 188 YFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGS 247
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
IP+ L QL+ + F+G G+N SG IP S+YN+SSL F P N+L GSLP DL FTLPNL
Sbjct: 248 IPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNL 307
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHLGN 329
+ LN+G N FTGP+P+S+SNAS+L+ I ++ F+GKV FG + L + ++ N LG
Sbjct: 308 QVLNIGNNDFTGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGK 367
Query: 330 GEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG 389
GE DDL F+NSL+ L++L ++ + FGG+LP ++ NLST+L L++ NNQL G IP G
Sbjct: 368 GEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPG 427
Query: 390 LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449
+ NLVNL L+L N FTG IP IG+L L R+ L N+ G IPSS+GN+T L +L
Sbjct: 428 IGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHL 487
Query: 450 DKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPS 509
N L G IPSS G L L LS N+L GTIP +V+ L SL+I L+L++NQL G LPS
Sbjct: 488 QNNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPS 547
Query: 510 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLD 569
LKNLG LDVSENKLSGEIP+ LGSC+ LE L M GNFF+G+IP SF SLRG+ +LD
Sbjct: 548 EVRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLD 607
Query: 570 LSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISE 629
LSRNNLSG+IP++ + L L NLNLSFN+FEG++P KGVF+N+++ S+ GN+ LCGGI E
Sbjct: 608 LSRNNLSGQIPEFLQQ-LSLSNLNLSFNNFEGQLPTKGVFNNATSTSVAGNNKLCGGIPE 666
Query: 630 LHLSTCSIKESKQSRS-RSLKLIIPIVTGIL-LVTGMSCLIITSWRSKSKRESATPPSAL 687
LHL C + + K S R LKL+I ++TG L LV MS L+I R + KRE + ++
Sbjct: 667 LHLPACPVTKPKTGESKRGLKLMIGLLTGFLGLVLIMSLLVINRLR-RVKREPSQTSASS 725
Query: 688 LASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------- 737
+L VSY LFKAT GFS NLIG G FGSVYKG L D ET+VAVK
Sbjct: 726 KDLILNVSYDGLFKATGGFSSANLIGTGGFGSVYKGXLGQD--ETVVAVKVIQLHQRGAV 783
Query: 738 ----------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPR 787
R+IRHRNLVK++T+C+SVD+QGNDFKALVYEFM NGSLE WLHP P
Sbjct: 784 KSFKAECEALRNIRHRNLVKVLTTCSSVDYQGNDFKALVYEFMPNGSLENWLHPVPTPDE 843
Query: 788 NSNLL------QRLSIAVDVASALDYLH 809
+++L QRL+IA+DVASALDYLH
Sbjct: 844 INDVLRILSLPQRLNIAIDVASALDYLH 871
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/808 (54%), Positives = 559/808 (69%), Gaps = 33/808 (4%)
Query: 31 NETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGS 90
NETD+LALL KA++T DPL + +SWN S HFC W GVTC RHQRV L L SL L GS
Sbjct: 37 NETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGS 96
Query: 91 LSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLE 150
LSP IGNL+FL L+L+ N+F +IPQE+G L RL+ L L NN+F G+IP N+S C NL
Sbjct: 97 LSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLV 156
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
RLGFN L+G++P LGS K+ + +HYNNL+G +P S GNL+S++ LS + N G
Sbjct: 157 YFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGS 216
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
IP+ L QL+ + F+G G+N SG IP S+YN+SSL F P N+L GSLP DL FTLPNL
Sbjct: 217 IPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNL 276
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHLGN 329
+ LN+G N FTG +P+S+SNAS+L+ I ++ F+GKV FG + L + ++ N LG
Sbjct: 277 QVLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGK 336
Query: 330 GEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG 389
GE DDL F+NSL+ L++L ++ + FGG+LP ++ NLST+L L++ NNQL G IP G
Sbjct: 337 GEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPG 396
Query: 390 LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449
+ NLVNL L+L N FTG IP IG+L L R+ L N+ G IPSS+GN+T L +L
Sbjct: 397 IGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHL 456
Query: 450 DKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPS 509
N L G IPSS G L L LS N+L GTIP +V+ L SL+I L+L++NQL G LPS
Sbjct: 457 QNNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPS 516
Query: 510 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLD 569
LKNLG LDVSENKLSGEIP+ LGSC+ LE L M GNFF+G+IP SF SLRG+ +LD
Sbjct: 517 EVRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLD 576
Query: 570 LSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISE 629
LSRNNLSG+IP++ + L L NLNLSFN+FEG++P KGVF+N+++ S+ GN+ LCGGI E
Sbjct: 577 LSRNNLSGQIPEFLQQ-LSLSNLNLSFNNFEGQLPTKGVFNNATSTSVAGNNKLCGGIPE 635
Query: 630 LHLSTCSIKESKQSRS-RSLKLIIPIVTGIL-LVTGMSCLIITSWRSKSKRESATPPSAL 687
LHL C + + K S R LKL+I ++TG L LV MS L+I R + KRE + ++
Sbjct: 636 LHLPACPVTKPKTGESKRGLKLMIGLLTGFLGLVLIMSLLVINRLR-RVKREPSQTSASS 694
Query: 688 LASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------- 737
+L VSY LFKAT GFS NLIG G FGSVYKGIL D ET+VAVK
Sbjct: 695 KDLILNVSYDGLFKATGGFSSANLIGTGGFGSVYKGILGQD--ETVVAVKVIQLHQRGAV 752
Query: 738 ----------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPR 787
R+IRHRNLVK++T+C+SVD+QGNDFKALVYEFM NGSLE WLHP P
Sbjct: 753 KSFKAECEALRNIRHRNLVKVLTTCSSVDYQGNDFKALVYEFMPNGSLENWLHPVPTPDE 812
Query: 788 NSNLL------QRLSIAVDVASALDYLH 809
+++L QRL+IA+DVASALDYLH
Sbjct: 813 INDVLRILSLPQRLNIAIDVASALDYLH 840
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/827 (53%), Positives = 551/827 (66%), Gaps = 37/827 (4%)
Query: 11 FFIFCCFSFSLQSTDYMHKSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTC 70
++ FSFS+ + NETD+L+LL FKA++T DPL LSSWN S FCQW GVTC
Sbjct: 18 IYLLVSFSFSI------YGGNETDKLSLLTFKAQITGDPLGKLSSWNESSQFCQWSGVTC 71
Query: 71 SPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWL 130
RHQRV L L S L GSLSPHIGNLSFLR+L+L NNS IPQE+G LFRL+ L L
Sbjct: 72 GRRHQRVVELDLHSYQLVGSLSPHIGNLSFLRILNLANNSLSLYIPQELGRLFRLEELVL 131
Query: 131 DNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSS 190
NNTF G IP NIS C NL L L GK+P +LG LSKL+ L + NN G+IP S
Sbjct: 132 RNNTFDGGIPANISRCANLRILDFSRGNLTGKLPAELGLLSKLQVLTIELNNFVGEIPYS 191
Query: 191 FGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEF 250
FGNLS++ + S N G IP QLKR++ + G N LSG IP SI+NLSSL F
Sbjct: 192 FGNLSAINAIYGSINNLEGSIPNVFGQLKRLKILSLGANNLSGMIPPSIFNLSSLTLLSF 251
Query: 251 PVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS 310
PVNQL GSLP LG TLPNL+ N+ NQF G IPA+ SNAS+L+ I N F+GKVP
Sbjct: 252 PVNQLYGSLPHTLGLTLPNLQVFNIHTNQFGGLIPATFSNASNLLSFQIGSNNFNGKVPP 311
Query: 311 FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLV-NASRLELLGININNFGGMLPEAVGNLS 369
+ H LQ + + N+LG GE +DL FV L N + LE L + NNFGG+LPE V N S
Sbjct: 312 LSSSHDLQVLGVGDNNLGKGENNDLNFVYPLANNMTSLEALDTSDNNFGGVLPEIVSNFS 371
Query: 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK 429
T+L + NQ+ G+IP+ + NL+NLE L LE NQ TG IP S+G L KL L L GNK
Sbjct: 372 TKLMKMTFARNQIRGSIPTQIGNLINLEALGLETNQLTGMIPSSMGKLQKLSDLFLNGNK 431
Query: 430 FLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGL 489
G IPSS+GN+T L ++ N LEGSIP SLG Q L+ L LS NNL+G IP E++ +
Sbjct: 432 ISGMIPSSMGNMTSLGRVNMRLNNLEGSIPPSLGNWQKLLSLALSQNNLSGPIPKELVSI 491
Query: 490 SSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGN 549
SLS+YL LS+N+L G+LP L NLG LDVS+N+ SGEIP SLGSCV LE L + N
Sbjct: 492 PSLSMYLVLSENELTGSLPIEMEKLVNLGYLDVSKNRFSGEIPKSLGSCVSLESLHLEEN 551
Query: 550 FFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVF 609
F QG IP + SSLR I+ L+LS NNL+G+IP++ E+F L++LNLSFN FEGEVP++G F
Sbjct: 552 FLQGPIPITLSSLRAIQELNLSYNNLTGQIPEFLEDFKLLESLNLSFNDFEGEVPVQGAF 611
Query: 610 SNSSAVSLDGNDNLCGGISELHLSTCSIKESKQSRSRS-LKLIIPIVTGIL-LVTGMSCL 667
N+SA+S+ GN LCGGI +L+L+ C E S+S + L II V G L ++ +S L
Sbjct: 612 QNTSAISIFGNKKLCGGIPQLNLTRCPSSEPTNSKSPTKLIWIIGSVCGFLGVILIISFL 671
Query: 668 IITSWRSKSKRESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNH 727
+ +R K + +A+ PS L S RV+Y++L ATDGFS NLIG GSFGSV+KGIL
Sbjct: 672 LFYCFRKKKDKPAASQPS-LETSFPRVAYEDLLGATDGFSSANLIGEGSFGSVFKGILGP 730
Query: 728 DDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767
D + +VAVK +SIRHRNLVK++T+C+S+DFQGNDFKALVY
Sbjct: 731 D--KIVVAVKVLNLLRKGASKSFMAECEALKSIRHRNLVKLLTTCSSIDFQGNDFKALVY 788
Query: 768 EFMVNGSLEEWLHP-----KPEAPRNSNLLQRLSIAVDVASALDYLH 809
EFMVNG+LEEWLHP + P+ +L+ RL+IA+ +ASAL+YLH
Sbjct: 789 EFMVNGNLEEWLHPVQTSDEANGPKALDLMHRLNIAIHMASALNYLH 835
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081190|ref|XP_002306327.1| predicted protein [Populus trichocarpa] gi|222855776|gb|EEE93323.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/836 (53%), Positives = 560/836 (66%), Gaps = 47/836 (5%)
Query: 8 SNCFF-------IFCCFSFSLQSTDYMHKSNETDQLALLEFKAKVTHDPLEVLSSWNYSR 60
S+C F I FSFSL H+ NETD+L+LL FKA++T DPL+ LSSWN S
Sbjct: 7 SSCIFCPLLLLIIQLSFSFSL------HEGNETDRLSLLAFKAQIT-DPLDALSSWNAST 59
Query: 61 HFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIG 120
HFC+W GV C RHQR+ L L S L G+LSPHIGNLSFLRVL+L+ N F +IPQE+G
Sbjct: 60 HFCKWSGVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFLRVLNLEGNYFSRDIPQELG 119
Query: 121 YLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHY 180
LFRLQ L L NNTF G+IP NIS C NL L LG N L GK+P +LGSLSKL +
Sbjct: 120 RLFRLQRLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGKIPAQLGSLSKLGAFVLQG 179
Query: 181 NNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIY 240
NNL G IPSSFGNLSS++ + N G IP++L LKR+++ N LSG IP SI
Sbjct: 180 NNLVGDIPSSFGNLSSVQNFFWTKNYLRGGIPESLGNLKRLKYFAVAENDLSGTIPSSIC 239
Query: 241 NLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIP 300
N+SSL Y NQL GSLP DLG LPNL L + N GPIPA++SNAS + + +
Sbjct: 240 NISSLAYVSLGQNQLHGSLPPDLGLNLPNLAYLVINFNHLNGPIPATLSNASKIFLVDLS 299
Query: 301 INGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGM 360
N +GK+P +L LQ + + N LGNGE+DDL F+ +L N++ LE LGIN NNFGG+
Sbjct: 300 YNNLTGKIPDLASLPDLQKLLVHHNDLGNGEEDDLSFLYTLANSTNLESLGINDNNFGGV 359
Query: 361 LPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKL 420
LPE V N ST L+ + G NQ+ G+IP+ + NL++L+ L LE NQ G IP SIG L L
Sbjct: 360 LPEIVSNFSTNLKGITFGRNQIHGSIPTEIGNLISLDTLSLETNQLHGIIPSSIGKLQNL 419
Query: 421 QRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTG 480
L L NK G IPSS+GN+T L+ +SF +N L+G+IP+SLG L++L LS NNL+G
Sbjct: 420 AALYLNENKISGSIPSSLGNITSLVEVSFAQNNLQGTIPASLGNWHKLLILDLSQNNLSG 479
Query: 481 TIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 540
IP EV+G+SSLS+ L L NQL G+LPS G L NLG L VS+N+LSGEIP SL SC
Sbjct: 480 PIPKEVLGISSLSVLLYLHDNQLTGSLPSEVGQLVNLGFLRVSKNRLSGEIPKSLDSCKS 539
Query: 541 LEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600
LE L + GNFF+G +P SSLR ++ L LS NNLSG+IP++ ++F L+ L+LS+N FE
Sbjct: 540 LEGLDLGGNFFEGPVP-DLSSLRALQMLLLSYNNLSGQIPQFLKDFKLLETLDLSYNDFE 598
Query: 601 GEVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTCSIKESKQSRSRS-LKLIIPIVTGIL 659
GEVP +GVF N+S +S+ GN LCGGI +L L C+ E + +S + L LII I G L
Sbjct: 599 GEVPEQGVFENTSRISVQGNKKLCGGIPQLDLPKCTSNEPARPKSHTKLILIIAIPCGFL 658
Query: 660 LVTGMSCLIITSWRSKSKRESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGS 719
+ M+ ++ R K+K E A+ PS +S R++YQ+L +ATDGFS NL+GAG+FGS
Sbjct: 659 GIVLMTSFLLFYSR-KTKDEPASGPS-WESSFQRLTYQDLLQATDGFSSSNLVGAGAFGS 716
Query: 720 VYKGILNHDDHETLVAVKR--------------------SIRHRNLVKIITSCASVDFQG 759
VY+G L D +VAVK +IRHRNLVK+IT+C+S DFQG
Sbjct: 717 VYRGTLTSDG--AVVAVKVLNLLRKGASKSFMAECAALINIRHRNLVKVITACSSNDFQG 774
Query: 760 NDFKALVYEFMVNGSLEEWLHP------KPEAPRNSNLLQRLSIAVDVASALDYLH 809
NDFKALVYEFMVNGSLEEWLHP PE RN +L+QRL+IA+DVASALDYLH
Sbjct: 775 NDFKALVYEFMVNGSLEEWLHPVHISDVTPET-RNLDLVQRLNIAIDVASALDYLH 829
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090977|ref|XP_002309132.1| predicted protein [Populus trichocarpa] gi|222855108|gb|EEE92655.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/834 (52%), Positives = 567/834 (67%), Gaps = 32/834 (3%)
Query: 5 IIASNCFFIFCCFSFSLQSTDYMHKSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQ 64
+I +CF + + S NETD LALL KA++ DPL ++SSWN S HFC
Sbjct: 9 VILQSCFVVIFLHAPSFTQAATTLSGNETDHLALLAIKAQIKLDPLGLMSSWNDSLHFCN 68
Query: 65 WKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFR 124
W G+ C HQRV L L L GSLSP IGN+SFLR + L+ N F EIPQEIG L R
Sbjct: 69 WGGIICGNLHQRVITLNLSHYGLVGSLSPQIGNMSFLRGISLEQNYFHGEIPQEIGRLDR 128
Query: 125 LQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLS 184
L+++ NN+F G+IP N+S C +L LRLGFN+L G++P +LGSL KL + +HYNNL+
Sbjct: 129 LKYINFSNNSFSGEIPANLSGCSSLLMLRLGFNKLTGQIPYQLGSLQKLERVQLHYNNLN 188
Query: 185 GQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSS 244
G +P S GN+SS+ LS S N F G IP L +LK + F+G G+N LSG IP +I+NLSS
Sbjct: 189 GSVPDSLGNISSVRSLSLSVNNFEGSIPDALGRLKTLNFLGLGLNNLSGMIPPTIFNLSS 248
Query: 245 LNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGF 304
L F P NQL G+LPSDLG TLPNL+ LN+G N F+GP+P SISNAS+L+ L I + F
Sbjct: 249 LIVFTLPYNQLHGTLPSDLGLTLPNLQVLNIGHNFFSGPLPVSISNASNLLELDIDTSNF 308
Query: 305 SGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEA 364
+ FG L L +++S N LG GE DDL F++SL L LL ++ ++FGG++P++
Sbjct: 309 TKVTIDFGGLPNLWSLALSSNPLGKGEADDLSFIDSLTKCRNLRLLDLSNSHFGGVIPDS 368
Query: 365 VGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLG 424
+GNLST+L +L++ NQL G+IP+ + NL+NL L +E N +G IP +G+L LQRL
Sbjct: 369 IGNLSTQLFLLKLRGNQLSGSIPTVIENLLNLAELTVEKNYLSGSIPSVLGNLKMLQRLD 428
Query: 425 LQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPT 484
L NK G IPSS+GN+T L KN + GSIPSS G + L L LS N L+GTIP
Sbjct: 429 LSENKLSGLIPSSLGNITQLFEFHLQKNQIMGSIPSSFGNLKYLQNLDLSQNLLSGTIPK 488
Query: 485 EVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 544
EV+GLSSL+I L+L+QNQL G LP L NLG LDVSENKL G+IP+SLGSCV LE+L
Sbjct: 489 EVMGLSSLTISLNLAQNQLTGPLPPEAQNLMNLGYLDVSENKLYGQIPSSLGSCVTLEKL 548
Query: 545 GMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604
M GNFF+G IP SFSSLRG+ ++DLSRNNLSG+IP++ + L L +LNLSFNHFEGEVP
Sbjct: 549 HMQGNFFEGAIPPSFSSLRGLRDMDLSRNNLSGQIPQFLKR-LALISLNLSFNHFEGEVP 607
Query: 605 IKGVFSNSSAVSLDGNDNLCGGISELHLSTCSIKESKQSR-SRSLKLIIPIVTGIL-LVT 662
+G F N++A+SL GN LCGGI +L L C + SK + SR +KL+I I+T +L LV
Sbjct: 608 REGAFLNATAISLSGNKRLCGGIPQLKLPRCVVNRSKNGKTSRRVKLMIAILTPLLVLVF 667
Query: 663 GMSCLIITSWRSKSKRESATPPSALLAS-VLRVSYQNLFKATDGFSLENLIGAGSFGSVY 721
MS L+I R K+++ S + +L+VSY+NL KAT GFS NLIGAGSFGSVY
Sbjct: 668 VMSILVINRLRKKNRQSSLASSLSSKQELLLKVSYRNLHKATAGFSSANLIGAGSFGSVY 727
Query: 722 KGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGND 761
+GIL D +ET+VAVK ++IRHRNLVKI+T+C+SVDFQGND
Sbjct: 728 RGIL--DPNETVVAVKVLFMRQRKTLKSFMAECEILKNIRHRNLVKILTACSSVDFQGND 785
Query: 762 FKALVYEFMVNGSLEEWLHPKP------EAPRNSNLLQRLSIAVDVASALDYLH 809
FKALVYEFM NG+LE WLH P E + + QRL+IA+DVA+AL+YLH
Sbjct: 786 FKALVYEFMPNGTLESWLHSFPRTNGINEDLKILSFHQRLNIAIDVAAALNYLH 839
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097750|ref|XP_002311066.1| predicted protein [Populus trichocarpa] gi|222850886|gb|EEE88433.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/807 (54%), Positives = 552/807 (68%), Gaps = 34/807 (4%)
Query: 31 NETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGS 90
NETD+L+LL FK +++ DPL LSSWN S HFC+W GV C +H+RV L L S L GS
Sbjct: 31 NETDRLSLLAFKTQIS-DPLGKLSSWNESLHFCEWSGVICGRKHRRVVELDLHSSQLAGS 89
Query: 91 LSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLE 150
LSPHIGNLSFLR+L+L+ NSF IPQE+G LFR+Q L L NNTF G+IP NIS C NL
Sbjct: 90 LSPHIGNLSFLRILNLEKNSFSYLIPQELGRLFRIQELSLGNNTFSGEIPVNISRCTNLL 149
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
S+ L N L GK+P + GSLSKL+ L N+L G+IP S+GNLS L+++ N G
Sbjct: 150 SIGLASNNLTGKLPAEFGSLSKLQVLNFQRNHLFGEIPPSYGNLSELQIIRGVRNNLQGG 209
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
IP ++ QLKR+ FGVN LSG IP SIYN+SSL F P+NQL G LP +LG TLPNL
Sbjct: 210 IPDSIGQLKRLADFTFGVNSLSGTIPSSIYNMSSLVRFSAPLNQLYGILPPELGLTLPNL 269
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNG 330
+ N+ NQF G IP+++SNAS + L + N F+GKVPS LH LQ + ++ N+LGN
Sbjct: 270 DTFNILSNQFRGLIPSTLSNASKISDLQLRNNSFTGKVPSLAGLHNLQRLVLNFNNLGNN 329
Query: 331 EKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL 390
E DDL F+ L N + LE+L IN NNFGG+LPE V N ST+LRI+ +G N L G+IP+ +
Sbjct: 330 EDDDLGFLYPLANTTSLEILAINHNNFGGVLPEIVCNFSTKLRIMIIGENNLRGSIPTEI 389
Query: 391 RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450
L+ L+ L LE NQ TG IP SIG L +L + GNK G IPSS+GN+T L+ + F
Sbjct: 390 GKLIGLDTLGLELNQLTGIIPSSIGKLQRLGVFNINGNKISGNIPSSLGNITSLLEVYFF 449
Query: 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN 510
N L+G IPSSLG CQNL++L L NNL+G+IP EV+G+SSLS+YLDL++NQL G LPS
Sbjct: 450 ANNLQGRIPSSLGNCQNLLMLRLDQNNLSGSIPKEVLGISSLSMYLDLAENQLIGPLPSE 509
Query: 511 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDL 570
G L +LG L+V +N+LSGEIP L SCV LE L + NFFQG+IP S SSLR ++ L+L
Sbjct: 510 VGKLVHLGGLNVYKNRLSGEIPGILSSCVSLEHLNLGPNFFQGSIPESLSSLRALQILNL 569
Query: 571 SRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISEL 630
S NNLSG+IPK+ F L +L+LSFN+ EGEVP++GVF+ +S S+ GN LCGG +L
Sbjct: 570 SHNNLSGKIPKFLAEFKLLTSLDLSFNNLEGEVPVQGVFARASGFSMLGNKKLCGGRPQL 629
Query: 631 HLSTC-SIKESKQSRSRSLKLIIPIVTG----ILLVTGMSCLIITSWRSKSKRESATPPS 685
+LS C S K K S +KLII I G ILLV+ M ++ KS+ S +P
Sbjct: 630 NLSRCTSKKSRKLKSSTKMKLIIAIPCGFVGIILLVSYMLFFLLK--EKKSRPASGSPWE 687
Query: 686 ALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR------- 738
++ RV+Y++L +AT GFS NLIGAGSFGSVYKGIL D V V
Sbjct: 688 ---STFQRVAYEDLLQATKGFSPANLIGAGSFGSVYKGILRSDGAAVAVKVFNLLREGAS 744
Query: 739 -----------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-----K 782
+IRHRNLVK++T+C+ +DFQGNDFKALVYEFMVNGSLEEWLHP +
Sbjct: 745 KSFMAECAALINIRHRNLVKVLTACSGIDFQGNDFKALVYEFMVNGSLEEWLHPVQISDE 804
Query: 783 PEAPRNSNLLQRLSIAVDVASALDYLH 809
R+ +LLQRL+IA+DVASALDYLH
Sbjct: 805 AHVRRDLSLLQRLNIAIDVASALDYLH 831
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/804 (53%), Positives = 546/804 (67%), Gaps = 31/804 (3%)
Query: 31 NETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGS 90
N TD+LALL+FKAK+T DPL + WN S HFCQW GVTCS RHQRV L L SL L GS
Sbjct: 31 NLTDRLALLDFKAKITDDPLGFMPLWNDSTHFCQWYGVTCSRRHQRVAILNLRSLQLAGS 90
Query: 91 LSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLE 150
+SPHIGNLSFLR L L+NNSF + IP E+G L RLQ L L NN+ G IP NIS C L
Sbjct: 91 ISPHIGNLSFLRDLYLQNNSFSHGIPPEVGRLRRLQRLRLSNNSLTGNIPSNISACSKLS 150
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
+ +N+L G++P +L L+KL+ +++ N SG IP S GNLSSL+VLSA N G
Sbjct: 151 EIYFAYNQLEGEIPEELSLLAKLQVISIQKNYFSGSIPPSIGNLSSLQVLSAPENYLSGN 210
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
IP + QL + FI VN LSG IP SIYNLSS+N NQ+QG LPS+LG TLPNL
Sbjct: 211 IPDAIGQLNNLIFISLSVNNLSGTIPPSIYNLSSINTLNIVYNQIQGRLPSNLGITLPNL 270
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNG 330
+ + N F G IP+S SNAS+L+ L + N +G+VPS LH LQ + + N+LG
Sbjct: 271 QVFAIARNDFIGSIPSSFSNASNLVWLIMSENKLTGRVPSLEQLHNLQILGLGYNYLG-L 329
Query: 331 EKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL 390
E +DL+FV+SLVN + L L I+ N F G+LPE++ N ST L + N + G IPS +
Sbjct: 330 EANDLDFVSSLVNCTNLWRLEIHNNKFHGVLPESISNFSTTFSQLVIAENNIAGRIPSSI 389
Query: 391 RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450
NLVNLERL + NQ +G IP + G+L+ L+ L L GNK G IPSS+GNLT+L+TLSF
Sbjct: 390 SNLVNLERLEMANNQLSGNIPSNFGNLNMLKVLHLFGNKLSGTIPSSLGNLTMLLTLSFY 449
Query: 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN 510
N L+G IPSSL +C+NL++L L+ NNL+G+IP +V GLSSLSI LDLS N G +P
Sbjct: 450 DNNLQGRIPSSLAECENLMVLDLAKNNLSGSIPLQVFGLSSLSIALDLSANHFTGVIPME 509
Query: 511 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDL 570
G LK+L L +S+N LSG IP+SLGSC++LE L + GNFF G +PSS SSLRG+ LD
Sbjct: 510 VGNLKDLEQLGISDNMLSGRIPDSLGSCIKLEVLALQGNFFDGLVPSSLSSLRGLRVLDF 569
Query: 571 SRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISEL 630
S NNLSG IP++ ++F L++LNLS+N+FEG VP++G+F N+S + GND LCGGI E
Sbjct: 570 SSNNLSGEIPEFLQSFDLLESLNLSYNNFEGRVPVEGIFRNASTTLVMGNDKLCGGIPEF 629
Query: 631 HLSTCSIKESKQSRSRSLKLIIPIVTGILLVTGMSCLIITSWRSKSKRESATPPSALLAS 690
HL+ C+ K K+ + LK++I + +L ++ + +T W K K E + P L
Sbjct: 630 HLAKCNAKSPKK-LTLLLKIVISTICSLLGLSFILIFALTFWLRKKKEEPTSDPYGHL-- 686
Query: 691 VLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------- 737
+L VS+Q+L +ATDGFS NLIG GSFG VYKG L D+ +AVK
Sbjct: 687 LLNVSFQSLLRATDGFSSANLIGRGSFGHVYKGFL--DEGNVTIAVKVLNLLHHGASTSF 744
Query: 738 -------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKP-----EA 785
R+IRHRNLVK++T+C+ +D+QGNDFKALVYE+MVNGSLEEWLHP P E
Sbjct: 745 IAECEALRNIRHRNLVKVLTACSGIDYQGNDFKALVYEYMVNGSLEEWLHPIPRTEEVEP 804
Query: 786 PRNSNLLQRLSIAVDVASALDYLH 809
PR+ NLLQRL+IA+DVASALDYLH
Sbjct: 805 PRSLNLLQRLNIAIDVASALDYLH 828
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113117|ref|XP_002316396.1| predicted protein [Populus trichocarpa] gi|222865436|gb|EEF02567.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/804 (54%), Positives = 546/804 (67%), Gaps = 31/804 (3%)
Query: 33 TDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLS 92
TD+L+LL FKA++T DPL LSSWN S HFC+W G C RHQRV L L S L GSLS
Sbjct: 15 TDRLSLLAFKAQITDDPLGALSSWNESLHFCEWSGAKCGRRHQRVVELDLHSCKLAGSLS 74
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESL 152
PHIGNLSFLR+LDL NNSF IPQE+G L RLQ L L+NNTF G+IP NIS+C NL+ +
Sbjct: 75 PHIGNLSFLRILDLSNNSFSQNIPQELGRLLRLQQLNLENNTFSGEIPANISNCSNLQLI 134
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
L N L+GK+P +LGSL L+ + N+L G+IP SF NLSS+E++ N G IP
Sbjct: 135 DLKGNNLIGKIPAELGSLLNLQACLLVTNHLVGEIPLSFENLSSVEIIGVGDNHLQGSIP 194
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLER 272
+ +LKR+R + +N LSG IP SIYNLSSL F +NQ GSLPSDLG LP+LE
Sbjct: 195 YGIGKLKRLRKLSVPLNNLSGTIPPSIYNLSSLTLFSVAINQFHGSLPSDLGQKLPSLEV 254
Query: 273 LNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEK 332
L N+F GPIP +ISNAS L + N F+GKVP F NL LQ++ I N LGNGE+
Sbjct: 255 LVFYANRFNGPIPVTISNASTLSVIDFGNNSFTGKVPPFANLPNLQYLGIDSNELGNGEE 314
Query: 333 DDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRN 392
DL F+ SL N + LE LG++ NN GGM PE + N S++ L +G NQ+ G+IP + N
Sbjct: 315 GDLSFLQSLANYTNLEELGMSDNNLGGMFPEIISNFSSQFTTLSMGRNQVRGSIPVDIGN 374
Query: 393 LVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452
L++L+ L+LE NQ TG IP SIG L L L L NK G IPSS+GN+T L+ L N
Sbjct: 375 LISLDTLMLETNQLTGVIPTSIGKLKNLHGLTLVENKISGNIPSSLGNVTSLVELYLSAN 434
Query: 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFG 512
L+G IPSSL CQNL+ L L+ NNL+G + +VIG++SLS+ LDLS NQL G LPS G
Sbjct: 435 NLQGGIPSSLANCQNLMSLKLAQNNLSGPLTKQVIGMASLSVSLDLSHNQLIGPLPSEVG 494
Query: 513 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSR 572
L NLG LDVS N+LSGEIP SLGSC+ LE L + GNF QG+IP SSLR ++ L+LS
Sbjct: 495 RLVNLGYLDVSHNRLSGEIPGSLGSCIMLEYLHLEGNFLQGSIPELLSSLRALQYLNLSY 554
Query: 573 NNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHL 632
NNL+G+IP++ +F LQ L+LSFNH EGE+P + VF N SAVS+ GND LCGGIS+L+L
Sbjct: 555 NNLTGQIPRFLADFQLLQRLDLSFNHLEGEMPTQRVFGNVSAVSVLGNDKLCGGISQLNL 614
Query: 633 STCSIKESKQSR-SRSLKLIIPIVTGILLVTGMSCLIIT-SWRSKSKRESATPPSALLAS 690
S C+ E ++ + S LKL+I I G ++ + ++ SWR K+K E A+ S + S
Sbjct: 615 SRCTSNELRKPKFSTKLKLVISIPCGFIIALLLISSLLIHSWR-KTKNEPASGASWEV-S 672
Query: 691 VLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR------------ 738
RV+Y+ L++AT GFS N IG GSFGSVYK IL D +VAVK
Sbjct: 673 FRRVTYEELYQATGGFSSSNFIGGGSFGSVYKAILAPDG--MIVAVKVFNLLRKGASKSY 730
Query: 739 --------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-----KPEA 785
+IRHRNLVKI+T+C+S+DF+GNDFKALVYEFMVNGSLEEWLHP +
Sbjct: 731 MAECAALINIRHRNLVKILTACSSLDFRGNDFKALVYEFMVNGSLEEWLHPVHTSDEERE 790
Query: 786 PRNSNLLQRLSIAVDVASALDYLH 809
N NL+QRL++A+DVASALDYLH
Sbjct: 791 QGNLNLIQRLNVAIDVASALDYLH 814
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097752|ref|XP_002311067.1| predicted protein [Populus trichocarpa] gi|222850887|gb|EEE88434.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/806 (53%), Positives = 544/806 (67%), Gaps = 31/806 (3%)
Query: 31 NETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGS 90
NETD+L+LL K+++T+DP +LSSWN S HFC W GV C RH+RV + L S L GS
Sbjct: 32 NETDRLSLLALKSQITNDPFGMLSSWNESLHFCDWSGVICGKRHRRVVEIDLHSAQLVGS 91
Query: 91 LSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLE 150
LSPHIGNLSFLR+L L+NN F + IPQE+G+LFRL+ L L+NNTF G+IP NISHC NL
Sbjct: 92 LSPHIGNLSFLRILKLENNRFSHNIPQELGHLFRLRMLSLENNTFDGKIPVNISHCSNLL 151
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
L L N L GK+P +LGSLSKL+ +N L G IPSSFGNLS++ + + N G
Sbjct: 152 ILSLSGNNLTGKLPIELGSLSKLQVFFFQFNYLVGGIPSSFGNLSAIIQIFGAGNYLQGG 211
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
IP ++ QLK ++ FG N ++G IP SIYNLSSL F PVNQL G+LP DLG TLPNL
Sbjct: 212 IPNSIGQLKSLKSFSFGRNNMTGMIPPSIYNLSSLMRFAVPVNQLHGNLPPDLGLTLPNL 271
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNG 330
E L + N+F+G IP + SNAS + + + N +G+VP +L KL+W+ + +N+LGNG
Sbjct: 272 EILLMSFNRFSGSIPPTFSNASTIAVIELSNNNLTGRVPDLSSLSKLRWLIVDVNYLGNG 331
Query: 331 EKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL 390
DDL F+ L N + LE L IN NNFGG+LP+ + N S L+ + G NQ+ G+IPSG+
Sbjct: 332 NDDDLSFLPPLANKTSLEELSINDNNFGGLLPKIISNFSENLKRMTFGRNQIRGSIPSGI 391
Query: 391 RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450
NL+ L+ L LE NQ TG IP SIG L L L L GNK G IPSS+GN+T L+ +
Sbjct: 392 GNLIGLDTLGLEMNQLTGVIPNSIGKLQNLGVLALGGNKISGNIPSSMGNITSLLEVYLS 451
Query: 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN 510
N L+G IPSSLG CQNL++L L NNL+G+IP EVI + S S L LS+NQL G+LP
Sbjct: 452 ANNLQGRIPSSLGNCQNLLILHLDQNNLSGSIPKEVISIPSSSRILVLSENQLTGSLPLE 511
Query: 511 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDL 570
G L NLG ++S N+LSGEIP +LGSCV LE L M GN FQG IP S SSLR ++ L+L
Sbjct: 512 VGKLANLGYFNLSHNRLSGEIPRTLGSCVSLEFLYMEGNLFQGPIPESLSSLRALQILNL 571
Query: 571 SRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISEL 630
S NNLSG IPK+ L +L+LSFN+ EGEVP++G+F+ +S S+ GN LCGG+ +L
Sbjct: 572 SHNNLSGEIPKFLAELKLLTSLDLSFNNLEGEVPVQGIFARASGFSMLGNKKLCGGMPQL 631
Query: 631 HLSTC-SIKESKQSRSRSLKLIIPI---VTGILLVTGMSCLIITSWRSKSKRESATPPSA 686
+LS C S K K S LKLII I GI+LV +S ++ + K R ++ P
Sbjct: 632 NLSRCTSKKSRKLKSSTKLKLIIAIPCGFVGIILV--VSYMLFFFLKEKKSRPASGSPWE 689
Query: 687 LLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR-------- 738
++ RV+Y++L +AT+GFS NLIGAGSFGSVYKGIL D V V
Sbjct: 690 --STFQRVAYEDLLQATNGFSPANLIGAGSFGSVYKGILRSDGAAVAVKVFNLLREGASK 747
Query: 739 ----------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-----KP 783
+IRHRNLVK++T+C+ +DFQGNDFKALVYEFMVNGSLEEWLHP +
Sbjct: 748 SFMAECAALINIRHRNLVKVLTACSGIDFQGNDFKALVYEFMVNGSLEEWLHPAQISDEA 807
Query: 784 EAPRNSNLLQRLSIAVDVASALDYLH 809
R+ +LLQRL+IA+DVASALDYLH
Sbjct: 808 HRRRDLSLLQRLNIAIDVASALDYLH 833
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 809 | ||||||
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.892 | 0.714 | 0.401 | 1.3e-158 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.892 | 0.704 | 0.413 | 2e-158 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.891 | 0.713 | 0.392 | 1.3e-152 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.891 | 0.714 | 0.378 | 3.3e-147 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.954 | 0.753 | 0.404 | 3.6e-144 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.917 | 0.719 | 0.400 | 5.6e-139 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.779 | 0.776 | 0.377 | 1.3e-128 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.777 | 0.536 | 0.339 | 1.3e-84 | |
| TAIR|locus:2138268 | 1045 | AT4G08850 [Arabidopsis thalian | 0.781 | 0.604 | 0.300 | 1.9e-85 | |
| TAIR|locus:2046525 | 1124 | AT2G33170 [Arabidopsis thalian | 0.772 | 0.556 | 0.320 | 1e-81 |
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 1.3e-158, Sum P(2) = 1.3e-158
Identities = 295/735 (40%), Positives = 420/735 (57%)
Query: 30 SNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTAXXXXXXXXXX 89
++ETD+ ALL+FK++V+ D VLSSWN+S C WKGVTC +++RVT
Sbjct: 21 TDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGG 80
Query: 90 XXXPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
P IGNLSFL LDL N F IPQE+G L RL++L + N G IP + +C L
Sbjct: 81 VISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRL 140
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG 209
+LRL N L G VP +LGSL+ L L ++ NN+ G++P+S GNL+ LE L+ S N G
Sbjct: 141 LNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEG 200
Query: 210 QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269
+IP ++QL ++ + N SG P ++YNLSSL N G L DLG LPN
Sbjct: 201 EIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPN 260
Query: 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGN 329
L N+G N FTG IP ++SN S L RL + N +G +P+FGN+ L+ + + N LG+
Sbjct: 261 LLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGS 320
Query: 330 GEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSX 389
DLEF+ SL N ++LE LGI N GG LP ++ NLS +L L +G + G+IP
Sbjct: 321 DSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYD 380
Query: 390 XXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449
N +G +P S+G L L+ L L N+ G IP+ IGN+T+L TL
Sbjct: 381 IGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDL 440
Query: 450 DKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNGTLPS 509
N EG +P+SLG C P E++ + L + LD+S N L G+LP
Sbjct: 441 SNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQ 499
Query: 510 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLD 569
+ G L+NLG L + +NKLSG++P +LG+C+ +E L + GN F G+IP L G++ +D
Sbjct: 500 DIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVD 558
Query: 570 LSRNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISE 629
LS N+LSG IP+Y + EG+VP+KG+F N++ VS+ GN++LCGGI
Sbjct: 559 LSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMG 618
Query: 630 LHLSTC-SIKES--KQSRSRSLKLIIPIVTGILLVTGMSCLIITS-WRSKSKRESAT--P 683
L C S S K+ SR K++I + GI L+ + +T W K K+ T P
Sbjct: 619 FQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNNP 678
Query: 684 -PSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-RSIR 741
PS L ++SY +L AT+GFS N++G+GSFG+VYK +L + + +VAVK +++
Sbjct: 679 TPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTE--KKVVAVKVLNMQ 736
Query: 742 HRNLVK-IITSCASV 755
R +K + C S+
Sbjct: 737 RRGAMKSFMAECESL 751
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1336 (475.4 bits), Expect = 2.0e-158, Sum P(2) = 2.0e-158
Identities = 305/737 (41%), Positives = 417/737 (56%)
Query: 30 SNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTAXXXXXXXXXX 89
+ ETD+ ALLEFK++V+ VL SWN S C W GV C +H+RVT
Sbjct: 36 TEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTG 95
Query: 90 XXXPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
P +GNLSFLR L+L +N F IP E+G LFRLQ+L + NN FGG IP +S+C +L
Sbjct: 96 VVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSL 155
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG 209
+L L N L VP + GSLSKL L++ NNL+G+ P+S GNL+SL++L NQ G
Sbjct: 156 STLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEG 215
Query: 210 QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269
+IP +++LK+M F +NK +G P IYNLSSL + N G+L D G LPN
Sbjct: 216 EIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPN 275
Query: 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHLG 328
L+ L +G N FTG IP ++SN S L +L IP N +GK+P SFG L L + ++ N LG
Sbjct: 276 LQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLG 335
Query: 329 NGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPS 388
N DL+F+ +L N S+L+ L + N GG LP + NLST+L L +G N + G+IP
Sbjct: 336 NYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPH 395
Query: 389 XXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLS 448
N TG++P S+G+L +L+++ L N GEIPSS+GN++ L L
Sbjct: 396 GIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLY 455
Query: 449 FDKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNGTLP 508
N EGSIPSSLG C P E++ L SL + L++S N L G L
Sbjct: 456 LLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLR 514
Query: 509 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENL 568
+ G LK L LDVS NKLSG+IP +L +C+ LE L + GN F G IP L G+ L
Sbjct: 515 QDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFL 573
Query: 569 DLSRNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCGGIS 628
DLS+NNLSG IP+Y +F+G VP +GVF N+SA+S+ GN NLCGGI
Sbjct: 574 DLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIP 633
Query: 629 ELHLSTCSIKESKQSRSRSLKLIIPI-VTGILLVTGMSCLIIT--SW---RSKSKR---- 678
L L CS++ + R S++ II I V+ ++ + CL + W R KS R
Sbjct: 634 SLQLQPCSVELPR--RHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNN 691
Query: 679 ESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR 738
E+ S + + ++SY L+K T GFS NLIG+G+FG+V+KG L + + V
Sbjct: 692 ENDRSFSPVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLN 751
Query: 739 SIRHRNLVKIITSCASV 755
+ I C ++
Sbjct: 752 LCKRGAAKSFIAECEAL 768
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1267 (451.1 bits), Expect = 1.3e-152, Sum P(2) = 1.3e-152
Identities = 289/737 (39%), Positives = 417/737 (56%)
Query: 30 SNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTAXXXXXXXXXX 89
++ETD+ ALLEFK++V+ +VLSSWN S C WK VTC +H+RVT
Sbjct: 21 TDETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGG 80
Query: 90 XXXPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
P IGN+SFL LDL +N+F IP+E+G LFRL+ L++ N+ G IP +S+C L
Sbjct: 81 IVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRL 140
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG 209
+L L N L VP +LGSL+KL L + NNL G++P S GNL+SL+ L + N G
Sbjct: 141 LNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEG 200
Query: 210 QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSL-NYFEFPVNQLQGSLPSDLGFTLP 268
++P L++L +M +G +NK G P +IYNLS+L + F F + GSL D G LP
Sbjct: 201 EVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFG-SGFSGSLKPDFGNLLP 259
Query: 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKV-PSFGNLHKLQWVSISMNHL 327
N+ LNLGEN G IP ++SN S L + I N +G + P+FG + LQ++ +S N L
Sbjct: 260 NIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPL 319
Query: 328 GNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIP 387
G+ DLEF++SL N + L+LL + GG LP ++ N+ST L L + N FG+IP
Sbjct: 320 GSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIP 379
Query: 388 SXXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447
N TG +P S+G L +L L L N+ GEIPS IGNLT L L
Sbjct: 380 QDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEIL 439
Query: 448 SFDKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNGTL 507
N EG +P SLGKC P E++ + +L + L + N L+G+L
Sbjct: 440 YLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTL-VNLSMEGNSLSGSL 498
Query: 508 PSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIEN 567
P++ G L+NL L + NK SG +P +LG+C+ +EQL + GN F G IP+ L G+
Sbjct: 499 PNDIGSLQNLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPN-IRGLMGVRR 557
Query: 568 LDLSRNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCGGI 627
+DLS N+LSG IP+Y +F G+VP KG F NS+ V + GN NLCGGI
Sbjct: 558 VDLSNNDLSGSIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGI 617
Query: 628 SELHLSTCSIKES--KQSRSRSLK---LIIPIVTGILLVTGMSCLIITSWRSKSKRESAT 682
+L L C +E + S LK +++ I +LL+ ++ +++ +R + K +
Sbjct: 618 KDLKLKPCLAQEPPVETKHSSHLKKVAILVSIGIALLLLLVIASMVLCWFRKRRKNQQTN 677
Query: 683 P--PSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-RS 739
PS L ++SY +L AT+GFS N++G+GSFG+V+K +L + +VAVK +
Sbjct: 678 NLVPSKLEIFHEKISYGDLRNATNGFSSSNMVGSGSFGTVFKALLPTESK--IVAVKVLN 735
Query: 740 IRHRNLVK-IITSCASV 755
++ R +K + C S+
Sbjct: 736 MQRRGAMKSFMAECESL 752
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1199 (427.1 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
Identities = 278/735 (37%), Positives = 401/735 (54%)
Query: 30 SNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTAXXXXXXXXXX 89
++E+D+ ALLE K++V+ + LS+WN S C WK V C +H+RVT
Sbjct: 21 TDESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGG 80
Query: 90 XXXPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
P IGNLSFL LDL NNSF IPQE+G LFRL++L + N G+IP ++S+C L
Sbjct: 81 VISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRL 140
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG 209
L L N L VP +LGSL KL L + N+L G+ P NL+SL VL+ N G
Sbjct: 141 LYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEG 200
Query: 210 QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269
+IP ++ L +M + +N SG P + YNLSSL N G+L D G LPN
Sbjct: 201 EIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPN 260
Query: 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKV-PSFGNLHKLQWVSISMNHLG 328
+ L+L N TG IP +++N S L I N +G + P+FG L L ++ ++ N LG
Sbjct: 261 IHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLG 320
Query: 329 NGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPS 388
+ DL F+++L N S L L ++ N GG LP ++ N+ST L +L + N ++G+IP
Sbjct: 321 SYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPH 380
Query: 389 XXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLS 448
N TG +P S+G+L L L L N+F GEIPS IGNLT L+ L
Sbjct: 381 DIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLY 440
Query: 449 FDKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNGTLP 508
N EG +P SLG C P E++ + +L ++L++ N L+G+LP
Sbjct: 441 LSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTL-VHLNMESNSLSGSLP 499
Query: 509 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENL 568
++ G L+NL L + N LSG +P +LG C+ +E + + N F G IP L G++N+
Sbjct: 500 NDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPD-IKGLMGVKNV 558
Query: 569 DLSRNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCGGIS 628
DLS NNLSG I +Y +FEG VP +G+F N++ VS+ GN NLCG I
Sbjct: 559 DLSNNNLSGSISEYFENFSKLEYLNLSDNNFEGRVPTEGIFQNATLVSVFGNKNLCGSIK 618
Query: 629 ELHLSTCSIKESK-QSRSRSL--KLIIPIVTGILLVTGMSCLIITSWRSKSKRESATPPS 685
EL L C + ++R SL K+ I + GI L+ + ++ SW K K S
Sbjct: 619 ELKLKPCIAQAPPVETRHPSLLKKVAIGVSVGIALLL-LLFIVSLSWFKKRKNNQKINNS 677
Query: 686 ALLASVL---RVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-RSIR 741
A + ++SY +L ATDGFS N++G+GSFG+V+K +L ++ +VAVK +++
Sbjct: 678 APFTLEIFHEKLSYGDLRNATDGFSSSNIVGSGSFGTVFKALLQTENK--IVAVKVLNMQ 735
Query: 742 HRNLVK-IITSCASV 755
R +K + C S+
Sbjct: 736 RRGAMKSFMAECESL 750
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 1409 (501.1 bits), Expect = 3.6e-144, P = 3.6e-144
Identities = 325/804 (40%), Positives = 442/804 (54%)
Query: 34 DQLALLEFKAKVTHDPLEVLSSWNYSRH--FCQWKGVTCSPRHQR----VTAXXXXXXXX 87
D+LALL FK+ + + + L+SWN S H C W GV C R +R V
Sbjct: 32 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNL 91
Query: 88 XXXXXPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCV 147
P +GNLSFLR LDL +N EIP E+ L RLQ L L +N+ G IP I C
Sbjct: 92 SGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACT 151
Query: 148 NLESLRLGFNELVGKVPRKLG-SLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
L SL L N+L G +PR++G SL L L ++ N LSG+IPS+ GNL+SL+ S N+
Sbjct: 152 KLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNR 211
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFT 266
G IP +L QL + + G N LSG IP SI+NLSSL F N+L G +P++ T
Sbjct: 212 LSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKT 271
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSISMN 325
L LE +++G N+F G IPAS++NASHL + I N FSG + S FG L L + + N
Sbjct: 272 LHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRN 331
Query: 326 HLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGN 385
E+DD F++ L N S+L+ L + NN GG+LP + NLST L L + N++ G+
Sbjct: 332 LFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGS 391
Query: 386 IPSXXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
IP N F G +P S+G L L L N G IP +IGNLT L
Sbjct: 392 IPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELN 451
Query: 446 TLSFDKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNG 505
L N G IP +L P+E+ + +LSI +++S+N L G
Sbjct: 452 ILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEG 511
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565
++P G LKNL N+LSG+IPN+LG C L L + N G+IPS+ L+G+
Sbjct: 512 SIPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGL 571
Query: 566 ENLDLSRNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCG 625
E LDLS NNLSG+IP F GEVP G F+ +S +S+ GN LCG
Sbjct: 572 ETLDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCG 631
Query: 626 GISELHLSTCSIKESKQSRSRSLKLIIPIVTGILLVTGMSCLIITSWRSKSKRESATPPS 685
GI +LHL C + L + + + + +++ + LI +W ++K+ P
Sbjct: 632 GIPDLHLPRCCPLLENRKHFPVLPISVSLAAALAILSSLYLLI--TWHKRTKK--GAPSR 687
Query: 686 ALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------- 737
+ VSY L KATDGF+ NL+G+GSFGSVYKG LN DH + +K
Sbjct: 688 TSMKGHPLVSYSQLVKATDGFAPTNLLGSGSFGSVYKGKLNIQDHVAVKVLKLENPKALK 747
Query: 738 ---------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKP--EAP 786
R++RHRNLVKI+T C+S+D +GNDFKA+VY+FM NGSLE+W+HP+ +A
Sbjct: 748 SFTAECEALRNMRHRNLVKIVTICSSIDNRGNDFKAIVYDFMPNGSLEDWIHPETNDQAD 807
Query: 787 -RNSNLLQRLSIAVDVASALDYLH 809
R+ NL +R++I +DVA ALDYLH
Sbjct: 808 QRHLNLHRRVTILLDVACALDYLH 831
|
|
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
Identities = 304/759 (40%), Positives = 423/759 (55%)
Query: 30 SNETDQLALLEFKAKVT-HDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTAXXXXXXXXX 88
SNETD ALLEFK++V+ ++ EVL+SWN+S FC W GVTC R +RV +
Sbjct: 27 SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLT 86
Query: 89 XXXXPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVN 148
P IGNLSFLR+L+L +NSF + IPQ++G LFRLQ+L + N G+IP ++S+C
Sbjct: 87 GVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSR 146
Query: 149 LESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208
L ++ L N L VP +LGSLSKL L + NNL+G P+S GNL+SL+ L + NQ
Sbjct: 147 LSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMR 206
Query: 209 GQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLP 268
G+IP +++L +M F +N SG P ++YN+SSL N G+L +D G+ LP
Sbjct: 207 GEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLP 266
Query: 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHL 327
NL RL LG NQFTG IP +++N S L R I N SG +P SFG L L W+ I N L
Sbjct: 267 NLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSL 326
Query: 328 GNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIP 387
GN LEF+ ++ N ++LE L + N GG LP ++ NLST L L +G N + G IP
Sbjct: 327 GNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIP 386
Query: 388 SXXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447
N +G +P S G L LQ + L N GEIPS GN+T L L
Sbjct: 387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKL 446
Query: 448 SFDKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNGTL 507
+ N G IP SLG+C+ P E++ + SL+ Y+DLS N L G
Sbjct: 447 HLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLA-YIDLSNNFLTGHF 505
Query: 508 PSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIEN 567
P G L+ L L S NKLSG++P ++G C+ +E L M GN F G IP S L ++N
Sbjct: 506 PEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKN 564
Query: 568 LDLSRNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCGGI 627
+D S NNLSGRIP+Y FEG VP GVF N++AVS+ GN N+CGG+
Sbjct: 565 VDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGV 624
Query: 628 SELHLSTCSIKESKQSRSRSLKLIIPIVTGILL-VTGMSCLIITS---WRSKSKRES--- 680
E+ L C ++ S + R + L + +V+GI + + + +II + W K K+++
Sbjct: 625 REMQLKPCIVQASPRKR-KPLSVRKKVVSGICIGIASLLLIIIVASLCWFMKRKKKNNAS 683
Query: 681 -ATPPSALLASVL--RVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK 737
P + + +VSY+ L AT FS NLIG+G+FG+V+KG+L ++ V V
Sbjct: 684 DGNPSDSTTLGMFHEKVSYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVL 743
Query: 738 RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLE 776
++H + C + F+G + LV V SL+
Sbjct: 744 NLLKHGATKSFMAECET--FKGIRHRNLVKLITVCSSLD 780
|
|
| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.3e-128, Sum P(2) = 1.3e-128
Identities = 241/638 (37%), Positives = 356/638 (55%)
Query: 104 LDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKV 163
L L++++ I +G L L+ L L +N G+IP +S L+ L L FN L G++
Sbjct: 83 LRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEI 142
Query: 164 PRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRF 223
P LG+L+ L L + N LSG IPSS G L+ L L+ + N G IP + QL+R+ F
Sbjct: 143 PAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSF 202
Query: 224 IGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGP 283
+ N LSG IP I+N+SSL FE N+L G+LP++ LP+L+ + + NQF G
Sbjct: 203 LSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGR 262
Query: 284 IPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLV 342
IPASI NAS++ TI +N FSG VP G + LQ + + E +D +F+ +L
Sbjct: 263 IPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALT 322
Query: 343 NASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSXXXXXXXXXXXXXX 402
N S L+ + + FGG+LP++V NLS+ L L + +N++ G++P
Sbjct: 323 NCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLA 382
Query: 403 XNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSL 462
N TG +P S L L+RL + NK +G +P +IGNLT L + N G+IPS+L
Sbjct: 383 NNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTL 442
Query: 463 GKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDV 522
G P E+ + +LS LD+S N L G++P G LKN+
Sbjct: 443 GNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNIVEFHA 502
Query: 523 SENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKY 582
NKLSGE P+++G C L+ L + NF G+IP + + L+G++ LDLS NNLSG+IP
Sbjct: 503 DSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQIPMS 562
Query: 583 XXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTCSIKESKQ 642
F GEVP GVF+N+S + + GN ++CGGI ELHL TCS+K K+
Sbjct: 563 LGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNAHICGGIPELHLPTCSLKSRKK 622
Query: 643 SRSRSLKLIIPI-VTGILLVTGMSCLIITSWRSKSKRESATPPSALLASVLRVSYQNLFK 701
+ + L L++ I + L V + +++T + + K AT +++ + ++Y+ L K
Sbjct: 623 KKHQILLLVVVICLVSTLAVFSLLYMLLTCHKRRKKEVPAT--TSMQGHPM-ITYKQLVK 679
Query: 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHE--TLVAVK 737
ATDGFS +L+G+GSFGSVYKG + D E +LVAV+
Sbjct: 680 ATDGFSSSHLLGSGSFGSVYKGEFDSQDGEITSLVAVR 717
|
|
| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 222/653 (33%), Positives = 329/653 (50%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
IGN S L L+L +N +IP E+G L +LQ L + N IP ++ L L L
Sbjct: 260 IGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGL 319
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
N LVG + ++G L L L +H NN +G+ P S NL +L VL+ N G++P
Sbjct: 320 SENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPAD 379
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLN 274
L L +R + N L+G IP SI N + L + NQ+ G +P GF NL ++
Sbjct: 380 LGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR--GFGRMNLTFIS 437
Query: 275 LGENQFTGPIPASISNASHLMRLTIPINGFSGKV-PSFGNLHKLQWVSISMNHLGNGEKD 333
+G N FTG IP I N S+L L++ N +G + P G L KL+ + +S N L G
Sbjct: 438 IGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSL-TGP-- 494
Query: 334 DLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSXXXXX 393
+ N L +L ++ N F G +P + NL T L+ LR+ +N L G IP
Sbjct: 495 ---IPREIGNLKDLNILYLHSNGFTGRIPREMSNL-TLLQGLRMYSNDLEGPIPEEMFDM 550
Query: 394 XXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNM 453
N+F+G+IP L L L LQGNKF G IP+S+ +L+LL T N+
Sbjct: 551 KLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNL 610
Query: 454 LEGSIPSSL-GKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNGTLPSNFG 512
L G+IP L + + +G + +DLS N +G++P +
Sbjct: 611 LTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQ 670
Query: 513 ILKNLGVLDVSENKLSGEIPNSLGSCV-RLEQLGMNGNFFQGNIPSSFSSLRGIENLDLS 571
KN+ LD S+N LSG IP+ + + + L ++ N F G IP SF ++ + +LDLS
Sbjct: 671 ACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLS 730
Query: 572 RNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELH 631
NNL+G IP+ + +G VP GVF N +A L GN +LCG S+
Sbjct: 731 SNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCG--SKKP 788
Query: 632 LSTCSIKESKQSRSRSLKLIIPIV--TGILLVTGMSCLIITSWRSKSKRESATPPSAL-- 687
L C+IK+ S+ ++I+ I+ LL+ + LI+T + K K+ + S+L
Sbjct: 789 LKPCTIKQKSSHFSKRTRVILIILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPD 848
Query: 688 LASVLRVSY---QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK 737
L S L++ + L +ATD F+ N+IG+ S +VYKG L +D T++AVK
Sbjct: 849 LDSALKLKRFEPKELEQATDSFNSANIIGSSSLSTVYKGQL--EDG-TVIAVK 898
|
|
| TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
Identities = 198/658 (30%), Positives = 318/658 (48%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESL 152
P +G+LS L L L N IP EIG L ++ + + +N G IP + + L +L
Sbjct: 160 PELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNL 219
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
L N L G +P ++G+L LR L + NNL+G+IPSSFGNL ++ +L+ NQ G+IP
Sbjct: 220 YLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIP 279
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLER 272
+ + + + NKL+G IP ++ N+ +L +NQL GS+P +LG + ++
Sbjct: 280 PEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELG-EMESMID 338
Query: 273 LNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHLGNGE 331
L + EN+ TGP+P S + L L + N SG +P N +L + + N+ G
Sbjct: 339 LEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNF-TGF 397
Query: 332 KDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSXXX 391
D ++ +LE L ++ N+F G +P+++ + + +R+ R N G+I
Sbjct: 398 LPD-----TICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRV-RFKGNSFSGDISEAFG 451
Query: 392 XXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK 451
N F G++ + KL L N G IP I N+T L L
Sbjct: 452 VYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSS 511
Query: 452 NMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNGTLPSNF 511
N + G +P S+ P+ + L++L YLDLS N+ + +P
Sbjct: 512 NRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLE-YLDLSSNRFSSEIPPTL 570
Query: 512 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLS 571
L L +++S N L IP L +L+ L ++ N G I S F SL+ +E LDLS
Sbjct: 571 NNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLS 630
Query: 572 RNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELH 631
NNLSG+IP + +G +P F N+ + +GN +LCG ++
Sbjct: 631 HNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQ 690
Query: 632 -LSTCSIKESKQS-RSRSL--KLIIPIVTGILLVTGMSCLIITSWRSKSKR-------ES 680
L CSI SK+S + R+L +++PI+ G +++ + I +R ++K+ ES
Sbjct: 691 GLKPCSITSSKKSHKDRNLIIYILVPII-GAIIILSVCAGIFICFRKRTKQIEEHTDSES 749
Query: 681 ATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR 738
++ + +V YQ + KAT F + LIG G G VYK L + ++AVK+
Sbjct: 750 GGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPN----AIMAVKK 803
|
|
| TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 1.0e-81, Sum P(2) = 1.0e-81
Identities = 214/667 (32%), Positives = 312/667 (46%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
+GNL+ L N F IP EIG L+ L L N G++P I V L+ + L
Sbjct: 201 LGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVIL 260
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
N+ G +P+ +G+L+ L TLA++ N+L G IPS GN+ SL+ L NQ G IPK
Sbjct: 261 WQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKE 320
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLN 274
L +L ++ I F N LSGEIP + +S L N+L G +P++L L NL +L+
Sbjct: 321 LGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELS-KLRNLAKLD 379
Query: 275 LGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWV-SISMNHLGNGEKD 333
L N TGPIP N + + +L + N SG +P L+ WV S N L +G+
Sbjct: 380 LSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQL-SGKIP 438
Query: 334 DLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSXXXXX 393
+ S L LL + N G +P V + L+ LRV N+L G P+
Sbjct: 439 PF-----ICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQ-LRVVGNRLTGQFPTELCKL 492
Query: 394 XXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNM 453
N+F+G +P IG KLQRL L N+F +P+ I L+ L+T + N
Sbjct: 493 VNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNS 552
Query: 454 LEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGI 513
L G IPS + C+ P E+ L L I L LS+N+ +G +P G
Sbjct: 553 LTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEI-LRLSENRFSGNIPFTIGN 611
Query: 514 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNF--FQGNIPSSFSSLRGIENLDLS 571
L +L L + N SG IP LG L Q+ MN ++ F G IP +L + L L+
Sbjct: 612 LTHLTELQMGGNLFSGSIPPQLGLLSSL-QIAMNLSYNDFSGEIPPEIGNLHLLMYLSLN 670
Query: 572 RNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELH 631
N+LSG IP + G++P +F N + S GN LCGG H
Sbjct: 671 NNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG----H 726
Query: 632 LSTCSIKESKQSRSRSLKL-------IIPIVTGILLVTGMSCLIITSWRS--KSKRESAT 682
L +C S SLK II IV+ + + G+S L+I ++ E
Sbjct: 727 LRSCDPSHSSWPHISSLKAGSARRGRIIIIVSSV--IGGISLLLIAIVVHFLRNPVEPTA 784
Query: 683 P------PSALLASVL-----RVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHE 731
P P + + R + +++ +AT GF ++G G+ G+VYK ++ +
Sbjct: 785 PYVHDKEPFFQESDIYFVPKERFTVKDILEATKGFHDSYIVGRGACGTVYKAVM--PSGK 842
Query: 732 TLVAVKR 738
T +AVK+
Sbjct: 843 T-IAVKK 848
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 809 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-120 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 6e-15 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-13 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-13 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 4e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-13 | |
| smart00219 | 257 | smart00219, TyrKc, Tyrosine kinase, catalytic doma | 6e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-13 | |
| smart00221 | 258 | smart00221, STYKc, Protein kinase; unclassified sp | 8e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-11 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 2e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-11 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 1e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-10 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 7e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-09 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-08 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 2e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 6e-08 | |
| cd05039 | 256 | cd05039, PTKc_Csk_like, Catalytic domain of C-term | 2e-07 | |
| cd06627 | 254 | cd06627, STKc_Cdc7_like, Catalytic domain of Cell | 6e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-06 | |
| cd05068 | 261 | cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re | 3e-06 | |
| cd05034 | 261 | cd05034, PTKc_Src_like, Catalytic domain of Src ki | 5e-06 | |
| cd05049 | 280 | cd05049, PTKc_Trk, Catalytic domain of the Protein | 6e-06 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 9e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| cd05038 | 284 | cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai | 4e-05 | |
| cd05035 | 273 | cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li | 6e-05 | |
| cd05052 | 263 | cd05052, PTKc_Abl, Catalytic domain of the Protein | 7e-05 | |
| cd05148 | 261 | cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro | 1e-04 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 3e-04 | |
| cd05036 | 277 | cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro | 3e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-04 | |
| cd05079 | 284 | cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma | 4e-04 | |
| cd05043 | 280 | cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece | 5e-04 | |
| COG0515 | 384 | COG0515, SPS1, Serine/threonine protein kinase [Ge | 6e-04 | |
| cd05059 | 256 | cd05059, PTKc_Tec_like, Catalytic domain of Tec-li | 7e-04 | |
| cd05048 | 283 | cd05048, PTKc_Ror, Catalytic Domain of the Protein | 7e-04 | |
| cd05041 | 251 | cd05041, PTKc_Fes_like, Catalytic domain of Fes-li | 8e-04 | |
| cd06623 | 264 | cd06623, PKc_MAPKK_plant_like, Catalytic domain of | 8e-04 | |
| cd05033 | 266 | cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec | 0.002 | |
| cd05082 | 256 | cd05082, PTKc_Csk, Catalytic domain of the Protein | 0.002 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.003 | |
| cd05032 | 277 | cd05032, PTKc_InsR_like, Catalytic domain of Insul | 0.003 | |
| cd06626 | 264 | cd06626, STKc_MEKK4, Catalytic domain of the Prote | 0.003 | |
| cd06609 | 274 | cd06609, STKc_MST3_like, Catalytic domain of Mamma | 0.003 | |
| cd07830 | 283 | cd07830, STKc_MAK_like, Catalytic domain of Male g | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 386 bits (994), Expect = e-120
Identities = 282/832 (33%), Positives = 417/832 (50%), Gaps = 78/832 (9%)
Query: 11 FFIFCCFSFSLQSTDYMHKSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTC 70
+ IF F L + M + E + LL FK+ + +DPL+ LS+WN S C W+G+TC
Sbjct: 11 YLIFMLFFLFLNFS--MLHAEELE--LLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITC 65
Query: 71 SPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYL-FRLQFLW 129
+ RV ++ L + G +S I L +++ ++L NN IP +I L++L
Sbjct: 66 N-NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124
Query: 130 LDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPS 189
L NN F G IP LE+L L N L G++P +GS S L+ L + N L G+IP+
Sbjct: 125 LSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182
Query: 190 SFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFE 249
S NL+SLE L+ ++NQ VGQIP+ L Q+K +++I G N LSGEIP+ I L+SLN+ +
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242
Query: 250 FPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP 309
N L G +PS LG L NL+ L L +N+ +GPIP SI + L+ L + N SG++P
Sbjct: 243 LVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301
Query: 310 SF-GNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNL 368
L L+ + + N+ + +L + RL++L + N F G +P+ +G
Sbjct: 302 ELVIQLQNLEILHLFSNNFTG------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK- 354
Query: 369 STRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428
L +L + N L G IP GL + NL +L+L N G IP S+G L+R+ LQ N
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414
Query: 429 KFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIG 488
F GE+PS L L+ L N L+G I S +L +L L+ N G +P + G
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFG 473
Query: 489 LSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNG 548
L LDLS+NQ +G +P G L L L +SENKLSGEIP+ L SC +L L ++
Sbjct: 474 SKRLE-NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532
Query: 549 NFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGV 608
N G IP+SFS + + LDLS+N LSG IPK N L +N+S NH G +P G
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592
Query: 609 FSNSSAVSLDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIPIVTGILLVTGMSCLI 668
F +A ++ GN +LCGG + L C + ++ S I G LV +
Sbjct: 593 FLAINASAVAGNIDLCGGDTTSGLPPC----KRVRKTPSWWFYITCTLGAFLVLALVAFG 648
Query: 669 ITSWRSKSKRESATPPSALLASVLRVSYQN------LF--KATDGFSL---------ENL 711
R ++ E + RV ++ F K + ++ EN+
Sbjct: 649 FVFIRGRNNLE-----------LKRVENEDGTWELQFFDSKVSKSITINDILSSLKEENV 697
Query: 712 IGAGSFGSVYKGILNHDD--------------HETLVAVKRSIRHRNLVKIITSCASVDF 757
I G G+ YKG + + +A ++H N+VK+I C S
Sbjct: 698 ISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLIGLCRS--- 754
Query: 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
L++E++ +L E L RN + +R IA+ +A AL +LH
Sbjct: 755 --EKGAYLIHEYIEGKNLSEVL-------RNLSWERRRKIAIGIAKALRFLH 797
|
Length = 968 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 6e-15
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 31/127 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILN--HDDHETLVAVK---------------------RSIRH 742
L +G G+FG VYKG L + ET VAVK + + H
Sbjct: 1 LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSH 60
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
N+V+++ C QG +V E+M G L ++L E L L +A+ +A
Sbjct: 61 PNIVRLLGVC----TQGEPLY-IVTEYMPGGDLLDFLRKHGEKL---TLKDLLQMALQIA 112
Query: 803 SALDYLH 809
++YL
Sbjct: 113 KGMEYLE 119
|
Length = 258 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 447 LSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGT 506
L D L G IP+ + K ++L + LS N++ G IP + ++SL + LDLS N NG+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV-LDLSYNSFNGS 481
Query: 507 LPSNFGILKNLGVLDVSENKLSGEIPNSLG 536
+P + G L +L +L+++ N LSG +P +LG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 3e-13
Identities = 91/314 (28%), Positives = 142/314 (45%), Gaps = 20/314 (6%)
Query: 284 IPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVN 343
+P+S+S L L+ + NL L + +++N L + ++ + L N
Sbjct: 62 LPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRS----NISELLELTN 117
Query: 344 ASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEG 403
+ L+L NI + +P +G L + L+ L + +N++ ++PS LRNL NL+ L L
Sbjct: 118 LTSLDLDNNNITD----IPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSF 172
Query: 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLG 463
N + +P + +L L L L GNK + ++P I L+ L L N + + SSL
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII-ELLSSLS 229
Query: 464 KCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVS 523
+NL L LSNN L +P + LS+L LDLS NQ+ + S+ G L NL LD+S
Sbjct: 230 NLKNLSGLELSNNKLE-DLPESIGNLSNLE-TLDLSNNQI--SSISSLGSLTNLRELDLS 285
Query: 524 ENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYF 583
N LS +P + LE L N + N ++ N P+
Sbjct: 286 GNSLSNALPLIALLLLLLELL---LNLLLTLKALELKLNSILLNNNILSNGE-TSSPEAL 341
Query: 584 ENFLFLQNLNLSFN 597
L NL N
Sbjct: 342 SILESLNNLWTLDN 355
|
Length = 394 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 32/127 (25%)
Query: 710 NLIGAGSFGSVYKGILNH-DDHETLVAVK---------------------RSIRHRNLVK 747
+G G+FG VYKG L D T VAVK + + H N+V+
Sbjct: 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWL----HPKPEAPRNS-NLLQRLSIAVDVA 802
++ C + + LV E+M G L ++L P +++ +L LS A+ +A
Sbjct: 61 LLGVCTE---EEPLY--LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIA 115
Query: 803 SALDYLH 809
++YL
Sbjct: 116 KGMEYLA 122
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-13
Identities = 34/82 (41%), Positives = 46/82 (56%)
Query: 408 GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQN 467
G IP I L LQ + L GN G IP S+G++T L L N GSIP SLG+ +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 468 LILLGLSNNNLTGTIPTEVIGL 489
L +L L+ N+L+G +P + G
Sbjct: 492 LRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 6e-13
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 128 LWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQI 187
L LDN G IP++IS +L+S+ L N + G +P LGS++ L L + YN+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 188 PSSFGNLSSLEVLSASANQFVGQIPKTLSQ--LKRMRF 223
P S G L+SL +L+ + N G++P L L R F
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520
|
Length = 623 |
| >gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 31/126 (24%)
Query: 707 SLENLIGAGSFGSVYKGILNH--DDHETLVAVK---------------------RSIRHR 743
+L +G G+FG VYKG L + VAVK R + H
Sbjct: 2 TLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHP 61
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
N+VK++ C + + +V E+M G L +L +L LS A+ +A
Sbjct: 62 NVVKLLGVCTE---EEPLY--IVMEYMEGGDLLSYLRKNRPKL---SLSDLLSFALQIAR 113
Query: 804 ALDYLH 809
++YL
Sbjct: 114 GMEYLE 119
|
Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 7e-13
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 471 LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530
LGL N L G IP ++ L L ++LS N + G +P + G + +L VLD+S N +G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQ-SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSS 558
IP SLG L L +NGN G +P++
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAA 509
|
Length = 623 |
| >gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-13
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 30/126 (23%)
Query: 707 SLENLIGAGSFGSVYKGILNHDDHET--LVAVK---------------------RSIRHR 743
+L +G G+FG VYKG L VAVK R + H
Sbjct: 2 TLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHP 61
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
N+VK++ C + +V E+M G L ++L + P+ +L LS A+ +A
Sbjct: 62 NIVKLLGVCTE---EEPLM--IVMEYMPGGDLLDYL--RKNRPKELSLSDLLSFALQIAR 114
Query: 804 ALDYLH 809
++YL
Sbjct: 115 GMEYLE 120
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-12
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 100 FLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNEL 159
F+ L L N R IP +I L LQ + L N+ G IP ++ +LE L L +N
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 160 VGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFG 192
G +P LG L+ LR L ++ N+LSG++P++ G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-11
Identities = 34/85 (40%), Positives = 51/85 (60%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
L L L G +P++ L++L +++S N + G IP SLGS LE L ++ N F G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 556 PSSFSSLRGIENLDLSRNNLSGRIP 580
P S L + L+L+ N+LSGR+P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-11
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 520 LDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRI 579
L + L G IPN + L+ + ++GN +GNIP S S+ +E LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 580 PKYFENFLFLQNLNLSFNHFEGEVP--IKGVFSNSSAVSLDGNDNLCG 625
P+ L+ LNL+ N G VP + G + ++ + N LCG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530
|
Length = 623 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 31/119 (26%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIIT 750
+G G FG+VY + VA+K + + H N+VK+
Sbjct: 1 LGEGGFGTVYLARDKKTGKK--VAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYG 58
Query: 751 SCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
F+ + LV E+ GSL++ L + + L I + + L+YLH
Sbjct: 59 V-----FEDENHLYLVMEYCEGGSLKDLLKENE---GKLSEDEILRILLQILEGLEYLH 109
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-11
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 379 NNQ-LFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSS 437
+NQ L G IP+ + L +L+ + L GN G IP S+G + L+ L L N F G IP S
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 438 IGNLTLLITLSFDKNMLEGSIPSSLG 463
+G LT L L+ + N L G +P++LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 7e-11
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 351 GININNFG--GMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTG 408
G+ ++N G G +P + L L+ + + N + GNIP L ++ +LE L L N F G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480
Query: 409 RIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTL 443
IP S+G L L+ L L GN G +P+++G L
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515
|
Length = 623 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 32/125 (25%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRN 744
+ + +G GSFG VY + + LVA+K + ++H N
Sbjct: 1 YEILEKLGEGSFGKVYLAR-DKKTGK-LVAIKVIKKKKIKKDRERILREIKILKKLKHPN 58
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
+V++ F+ D LV E+ G L + L + + + + SA
Sbjct: 59 IVRLYDV-----FEDEDKLYLVMEYCEGGDLFDLLKKRGRLSED----EARFYLRQILSA 109
Query: 805 LDYLH 809
L+YLH
Sbjct: 110 LEYLH 114
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 5e-10
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 209 GQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLP 268
G IP +S+L+ ++ I N + G IP S+ +++SL + N GS+P LG L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLT 490
Query: 269 NLERLNLGENQFTGPIPASI 288
+L LNL N +G +PA++
Sbjct: 491 SLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-10
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 31 NETDQLALLEFKAKVTHDPLEVLSSWNYS-RHFCQWKGVTCS 71
D+ ALL FK+ + DP LSSWN S C W GVTC
Sbjct: 1 LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-09
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 65 WKGVTC----SPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIG 120
W G C + + L L + L+G + I L L+ ++L NS R IP +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463
Query: 121 YLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSL 170
+ L+ L L N+F G IP+++ +L L L N L G+VP LG
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 4e-09
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 423 LGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTI 482
LGL G IP+ I L L +++ N + G+IP SLG +L +L LS N+ G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 483 PTEVIGLSSLSIYLDLSQNQLNGTLPSNFG 512
P + L+SL I L+L+ N L+G +P+ G
Sbjct: 483 PESLGQLTSLRI-LNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 84/266 (31%), Positives = 117/266 (43%), Gaps = 38/266 (14%)
Query: 338 VNSLVNASRLELLGININNFGGM-LPEAVGNLSTR--LRILRVGNNQLFGNIPSGLRNLV 394
L+ +S LL +++ + G+ + NL L L + N+L NI S L L
Sbjct: 58 TLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELT 116
Query: 395 NLERLLLEGNQFTGRIPGSIGDLH-KLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNM 453
NL L L+ N T IP IG L L+ L L NK + +PS + NL L L N
Sbjct: 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174
Query: 454 LEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGI 513
L +P L NL L LS N ++ +P E+ LS+L LDLS N + L S+
Sbjct: 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE-ELDLSNNSII-ELLSSLSN 230
Query: 514 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573
LKNL L++S NKL ++P S +L +E LDLS N
Sbjct: 231 LKNLSGLELSNNKLE-------------------------DLPESIGNLSNLETLDLSNN 265
Query: 574 NLSGRIPKYFENFLFLQNLNLSFNHF 599
+S + L+ L+LS N
Sbjct: 266 QIS--SISSLGSLTNLRELDLSGNSL 289
|
Length = 394 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 33/126 (26%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHR 743
+ L +G+GSFG+VYK H +VAVK R + H
Sbjct: 1 YELLRKLGSGSFGTVYKAK--HKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHP 58
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
N+V++I + F+ D LV E+ G L ++L + + IA+ +
Sbjct: 59 NIVRLIDA-----FEDKDHLYLVMEYCEGGDLFDYLSRG----GPLSEDEAKKIALQILR 109
Query: 804 ALDYLH 809
L+YLH
Sbjct: 110 GLEYLH 115
|
Length = 260 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 6e-08
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 14/217 (6%)
Query: 78 TALLLPSLLLQG----SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYL-FRLQFLWLDN 132
L LPSL L S + L+ L LDL NN+ +IP IG L L+ L L +
Sbjct: 91 NLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSD 149
Query: 133 NTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFG 192
N +P + + NL++L L FN+L +P+ L +LS L L + N +S +P
Sbjct: 150 NKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE 206
Query: 193 NLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPV 252
LS+LE L S N + ++ +LS LK + + NKL ++P SI NLS+L +
Sbjct: 207 LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264
Query: 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASIS 289
NQ+ +L NL L+L N + +P
Sbjct: 265 NQISS---ISSLGSLTNLRELDLSGNSLSNALPLIAL 298
|
Length = 394 |
| >gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 22/116 (18%)
Query: 708 LENLIGAGSFGSVYKGIL--------NHDDHETLV-------AVKRSIRHRNLVKIITSC 752
L IG G FG V G D T +V ++RH NLV+++
Sbjct: 10 LGATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLL--- 66
Query: 753 ASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
V QGN +V E+M GSL ++L + A L Q+L A+DV ++YL
Sbjct: 67 -GVVLQGNPL-YIVTEYMAKGSLVDYLRSRGRA--VITLAQQLGFALDVCEGMEYL 118
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256 |
| >gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 39/129 (30%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKR----------------------SIRHR 743
+ L +LIG G+FG VYKG LN + + VA+K+ +++H
Sbjct: 2 YQLGDLIGRGAFGVVYKG-LNLETGDF-VAIKQISLEKIKEEALKSIMQEIDLLKNLKHP 59
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA- 802
N+VK I S + +D ++ E+ NGSL + + +AV V
Sbjct: 60 NIVKYIGS-----IETSDSLYIILEYAENGSLRQIIK-------KFGPFPESLVAVYVYQ 107
Query: 803 --SALDYLH 809
L YLH
Sbjct: 108 VLQGLAYLH 116
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 231 LSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISN 290
L G IP I L L N ++G++P LG ++ +LE L+L N F G IP S+
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQ 488
Query: 291 ASHLMRLTIPINGFSGKVPS 310
+ L L + N SG+VP+
Sbjct: 489 LTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 29/116 (25%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSC 752
+GAG FG V++G+ N+ T VAVK + +RH L+++ C
Sbjct: 14 LGAGQFGEVWEGLWNNT---TPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVC 70
Query: 753 ASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
+ +V E M GSL E+L A R L Q + +A VAS + YL
Sbjct: 71 TL-----EEPIYIVTELMKYGSLLEYLQ--GGAGRALKLPQLIDMAAQVASGMAYL 119
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261 |
| >gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 29/122 (23%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV 746
LE +GAG FG V+ G N T VAVK + +RH LV
Sbjct: 8 LKLERKLGAGQFGEVWMGTWN---GTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLV 64
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
++ C+ + +V E+M GSL ++L E + L Q + +A +A +
Sbjct: 65 QLYAVCS----EEEPI-YIVTEYMSKGSLLDFLK-SGEG-KKLRLPQLVDMAAQIAEGMA 117
Query: 807 YL 808
YL
Sbjct: 118 YL 119
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261 |
| >gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 39/131 (29%)
Query: 712 IGAGSFGSVYKG---ILNHDDHETLVAVK---------------------RSIRHRNLVK 747
+G G+FG V+ G L ++ + LVAVK + +H N+VK
Sbjct: 13 LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH----------PKPEAPRNSNLLQRLSI 797
C +G D +V+E+M +G L ++L L Q L I
Sbjct: 73 FYGVCT----EG-DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQI 127
Query: 798 AVDVASALDYL 808
AV +AS + YL
Sbjct: 128 AVQIASGMVYL 138
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 9e-06
Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 36/127 (28%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNL 745
F + IG G FG VYK H VA+K + +H N+
Sbjct: 2 FEILEKIGKGGFGEVYKAR--HKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNI 59
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV---DVA 802
VK S + D +V EF GSL++ L + L IA ++
Sbjct: 60 VKYYGS-----YLKKDELWIVMEFCSGGSLKDLLKSTNQ------TLTESQIAYVCKELL 108
Query: 803 SALDYLH 809
L+YLH
Sbjct: 109 KGLEYLH 115
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 34/141 (24%)
Query: 253 NQ-LQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-S 310
NQ L+G +P+D+ L +L+ +NL N G IP S+ + + L L + N F+G +P S
Sbjct: 427 NQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 311 FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLST 370
G L L+ +L +N N+ G +P A+G
Sbjct: 486 LGQLTSLR------------------------------ILNLNGNSLSGRVPAALGGRLL 515
Query: 371 RLRILRVGNNQLFGNIPSGLR 391
+N IP GLR
Sbjct: 516 HRASFNFTDNAGLCGIP-GLR 535
|
Length = 623 |
| >gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 29/123 (23%)
Query: 710 NLIGAGSFGSVYKGILNHDDHET--LVAVK---------------------RSIRHRNLV 746
+G G FG V + T VAVK R++ H N+V
Sbjct: 10 KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIV 69
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
K C G L+ E++ +GSL ++L NL + L + + +D
Sbjct: 70 KYKGVCEK---PGGRSLRLIMEYLPSGSLRDYL---QRHRDQINLKRLLLFSSQICKGMD 123
Query: 807 YLH 809
YL
Sbjct: 124 YLG 126
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284 |
| >gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 34/133 (25%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETL-VAVK----------------------RSIRH 742
L ++G G FGSV +G L+ DD L VAVK + H
Sbjct: 1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDH 60
Query: 743 RNLVKIITSCASVDFQGNDFKAL-----VYEFMVNGSLEEWLHPK--PEAPRNSNLLQRL 795
N++K+I C F+ + + + + FM +G L +L P L L
Sbjct: 61 PNVMKLIGVC----FEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLL 116
Query: 796 SIAVDVASALDYL 808
VD+A ++YL
Sbjct: 117 KFMVDIALGMEYL 129
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273 |
| >gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 26/120 (21%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDD---HETL--VAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E L AV + I+H NLV+++
Sbjct: 9 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 68
Query: 750 TSCA-SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
C F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 69 GVCTREPPFY------IITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYL 120
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263 |
| >gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 24/120 (20%)
Query: 706 FSLENLIGAGSFGSVYKGI-----------------LNHDDHETLVAVKRSIRHRNLVKI 748
F+LE +G+G FG V++G+ L D + V + +RH++L+ +
Sbjct: 8 FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISL 67
Query: 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
C+ + ++ E M GSL +L PE + + + +A VA + YL
Sbjct: 68 FAVCS-----VGEPVYIITELMEKGSLLAFLR-SPEG-QVLPVASLIDMACQVAEGMAYL 120
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 37/129 (28%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHR 743
++ L+G GSFGSVY + L+AVK S++H
Sbjct: 2 WTRGELLGRGSFGSVYLALDKDTG--ELMAVKSVELSGDSEEELEALEREIRILSSLQHP 59
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVD 800
N+V+ S + + + E++ GSL L PE ++++ +
Sbjct: 60 NIVRYYGSERDEE---KNTLNIFLEYVSGGSLSSLLKKFGKLPE-----PVIRKYTR--Q 109
Query: 801 VASALDYLH 809
+ L YLH
Sbjct: 110 ILEGLAYLH 118
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 32/134 (23%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVKR-------------------- 738
D +L +G G+FG VY+G+ D E VAVK
Sbjct: 4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIM 63
Query: 739 -SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL---HPKPEAPRNSNLLQR 794
H+N+V++I V F+ + ++ E M G L+ +L P+PE P + +
Sbjct: 64 SKFNHQNIVRLI----GVSFERLP-RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDL 118
Query: 795 LSIAVDVASALDYL 808
L A DVA YL
Sbjct: 119 LFCARDVAKGCKYL 132
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 148 NLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
NL+SL L N L L L+ L + NNL+ P +F L SL L S N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 12/78 (15%)
Query: 734 VAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNS---N 790
+ + R++ H N+VK C + GN K L+ EF+ +GSL+E+L PRN N
Sbjct: 57 IEILRNLYHENIVKYKGICT--EDGGNGIK-LIMEFLPSGSLKEYL------PRNKNKIN 107
Query: 791 LLQRLSIAVDVASALDYL 808
L Q+L AV + +DYL
Sbjct: 108 LKQQLKYAVQICKGMDYL 125
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284 |
| >gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 31/133 (23%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHD--------------DHETLVAVK---------RSI 740
D +L +L+ G+FG ++ GIL + DH + + V +
Sbjct: 6 DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL 65
Query: 741 RHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNS----NLLQRLS 796
H+N++ I+ C + + ++Y +M G+L+ +L N+ + Q +
Sbjct: 66 SHQNILPILHVC----IEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVH 121
Query: 797 IAVDVASALDYLH 809
+A+ +A + YLH
Sbjct: 122 MAIQIACGMSYLH 134
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280 |
| >gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (99), Expect = 6e-04
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 705 GFSLENLIGAGSFGSVYKG---------ILNHDDHETLVAVKRSIRHRNLVKIITSCASV 755
+ + +G GSFG VY +L V+R +R ++ + ++
Sbjct: 1 SYRILRKLGEGSFGEVYLARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNI 60
Query: 756 -----DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
FQ LV E++ GSLE+ L + + L I + SAL+YLH
Sbjct: 61 VKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGR-KGPLSESEALFILAQILSALEYLH 118
|
Length = 384 |
| >gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 28/115 (24%)
Query: 712 IGAGSFGSVY----------------KGILNHDD--HETLVAVKRSIRHRNLVKIITSCA 753
+G+G FG V+ +G ++ DD E V +K S H NLV++ C
Sbjct: 12 LGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLS--HPNLVQLYGVCT 69
Query: 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
Q F +V E+M NG L +L + L L + DV A++YL
Sbjct: 70 K---QRPIF--IVTEYMANGCLLNYLRERKGKLGTEWL---LDMCSDVCEAMEYL 116
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256 |
| >gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 46/144 (31%)
Query: 706 FSLENL-----IGAGSFGSVYKGIL---NHDDHETLVAVK-------------------- 737
L + +G G+FG VYKG L N T VA+K
Sbjct: 2 IPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAEL 61
Query: 738 -RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL-----HPKPEAPRNSNL 791
++H N+V ++ C +++E++ +G L E+L H A
Sbjct: 62 MSDLQHPNIVCLLGVCTK-----EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDET 116
Query: 792 LQR-------LSIAVDVASALDYL 808
++ L IA+ +A+ ++YL
Sbjct: 117 VKSSLDCSDFLHIAIQIAAGMEYL 140
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283 |
| >gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 32/119 (26%)
Query: 711 LIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKII 749
IG G+FG VYKG+L T VAVK + H N+VK+I
Sbjct: 2 KIGKGNFGDVYKGVLK---GNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLI 58
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
C +V E + GSL +L K LLQ +++D A+ ++YL
Sbjct: 59 GVCVQ-----KQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQ---MSLDAAAGMEYL 109
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251 |
| >gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 22/114 (19%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKR-----SIRHRNLV----KIITSCAS---VDFQG 759
+G GS G VYK H + A+K+ R + K + SC S V G
Sbjct: 9 LGQGSSGVVYKVR--HKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYG 66
Query: 760 NDFK----ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+K ++V E+M GSL + L + P IA + LDYLH
Sbjct: 67 AFYKEGEISIVLEYMDGGSLADLLKKVGKIPEP----VLAYIARQILKGLDYLH 116
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264 |
| >gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 44/131 (33%)
Query: 707 SLENLIGAGSFGSVYKGILN-HDDHETLVAVKR-----------------SI----RHRN 744
++E +IG G FG V +G L E VA+K SI H N
Sbjct: 7 TIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPN 66
Query: 745 LVK---IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSN----LLQRLSI 797
+++ ++T V ++ E+M NGSL+++L R ++ + Q + +
Sbjct: 67 IIRLEGVVTKSRPV--------MIITEYMENGSLDKFL-------RENDGKFTVGQLVGM 111
Query: 798 AVDVASALDYL 808
+AS + YL
Sbjct: 112 LRGIASGMKYL 122
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266 |
| >gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 706 FSLENLIGAGSFGSV----YKG-------ILNHDDHETLVA---VKRSIRHRNLVKIITS 751
L IG G FG V Y+G I N + +A V +RH NLV+++
Sbjct: 8 LKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG- 66
Query: 752 CASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
V+ +G + +V E+M GSL ++L + + + L L ++DV A++YL
Sbjct: 67 -VIVEEKGGLY--IVTEYMAKGSLVDYLRSRGRSVLGGDCL--LKFSLDVCEAMEYL 118
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 5/208 (2%)
Query: 413 SIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLG 472
S + + RL L + + S + L + L + +L L L
Sbjct: 40 SNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLD 99
Query: 473 LSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532
L+ N L I + + LDL N + P + NL LD+S+NK+ +P
Sbjct: 100 LNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLP 156
Query: 533 NSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNL 592
+ L + L+ L ++ N ++P S+L + NLDLS N +S +P E L+ L
Sbjct: 157 SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL 214
Query: 593 NLSFNHFEGEVPIKGVFSNSSAVSLDGN 620
+LS N + N S + L N
Sbjct: 215 DLSNNSIIELLSSLSNLKNLSGLELSNN 242
|
Length = 394 |
| >gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 29/125 (23%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR-------NLVKIITSCASVD 756
+G GSFG VY+G+ + ET VA+K S+R R +++K V
Sbjct: 14 LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73
Query: 757 F-----QGNDFKALV-YEFMVNGSLEEWLHPK-PEAPRNSN-----LLQRLSIAVDVASA 804
G LV E M G L+ +L + PEA N L + + +A ++A
Sbjct: 74 LLGVVSTGQ--PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADG 131
Query: 805 LDYLH 809
+ YL
Sbjct: 132 MAYLA 136
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277 |
| >gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 39/125 (31%)
Query: 710 NLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVK 747
N IG G+FG VY + N D E L+AVK ++H NLVK
Sbjct: 6 NKIGGGTFGKVYTAV-NLDTGE-LMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVK 63
Query: 748 IITSCASVDFQGNDFKALVYEFM---VNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
V+ VY FM G+LEE L ++++ ++ +
Sbjct: 64 ----YYGVEVHREK----VYIFMEYCSGGTLEELLEHGRILDE--HVIRVYTL--QLLEG 111
Query: 805 LDYLH 809
L YLH
Sbjct: 112 LAYLH 116
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264 |
| >gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 37/127 (29%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKRSIRHRNL-------------VKIITSC 752
F+L IG GSFG VYK I + VA+K +L ++ ++ C
Sbjct: 3 FTLLECIGKGSFGEVYKAIDKRTNQV--VAIKVI----DLEEAEDEIEDIQQEIQFLSQC 56
Query: 753 AS---VDFQG---NDFK-ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV---DVA 802
S + G K ++ E+ GS + L P L IA +V
Sbjct: 57 RSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGK--------LDETYIAFILREVL 108
Query: 803 SALDYLH 809
L+YLH
Sbjct: 109 LGLEYLH 115
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274 |
| >gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 32/120 (26%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKR------------------SIR----HRNLVKII 749
+G G+FGSVY N + E LVA+K+ S+R H N+VK+
Sbjct: 7 LGDGTFGSVYLAR-NKETGE-LVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLK 64
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
F+ ND V+E+M G+L + L + S + R SI + L ++H
Sbjct: 65 EV-----FRENDELYFVFEYM-EGNLYQ-LMKDRKGKPFSESVIR-SIIYQILQGLAHIH 116
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 809 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.98 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.84 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.83 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.75 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.71 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.67 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.63 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.6 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.59 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.59 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.59 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.58 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.58 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.57 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.53 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 99.5 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.5 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.48 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.48 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.48 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.47 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.45 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.44 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.43 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.43 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.42 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 99.42 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.42 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.41 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.41 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.41 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 99.41 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.4 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.39 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.39 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.39 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.38 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.37 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.37 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.37 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.36 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.36 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.36 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.36 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.36 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.35 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.35 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 99.35 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.35 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.35 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.35 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.35 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.34 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.34 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.34 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.34 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.33 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.33 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.33 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 99.33 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.33 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.33 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 99.33 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.33 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.32 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.32 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.32 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.32 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.31 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.31 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.3 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.3 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.3 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.3 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.3 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 99.3 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.3 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.3 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.3 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.3 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.3 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.3 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.29 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.29 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.29 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.29 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.29 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.29 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.29 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.29 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.28 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.28 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.28 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.28 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.27 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.27 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.27 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.27 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.27 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.27 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.27 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.27 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.27 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.27 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.27 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.27 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.27 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.27 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.26 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.26 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.26 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.26 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.26 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.26 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.26 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.26 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.26 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.26 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.26 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.25 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.25 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.25 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.25 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.25 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.25 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.24 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.24 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.24 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.24 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.24 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.24 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.24 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.24 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.24 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.24 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.23 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.23 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.23 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.23 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.23 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.23 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.23 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.23 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.23 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.22 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.22 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.22 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.22 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.22 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.22 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 99.22 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.22 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.22 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.22 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.22 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.22 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.22 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.21 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.21 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.21 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.21 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.21 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.21 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.21 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.21 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.21 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.2 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.2 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.2 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 99.2 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.2 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.2 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.2 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.2 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 99.2 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.2 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.2 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.2 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.19 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.19 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.19 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.19 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.19 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.19 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.19 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 99.19 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.19 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.19 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.19 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.19 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.19 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.19 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.19 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.18 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.18 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.18 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.18 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.18 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.18 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.18 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.18 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.18 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.18 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.18 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.18 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.18 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.17 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.17 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.17 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.17 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.17 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.17 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.17 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.17 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.17 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.17 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.17 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.17 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.17 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.17 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.17 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.17 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 99.17 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.16 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.16 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.16 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.16 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.16 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.16 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.16 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.16 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.16 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.16 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.16 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.16 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.16 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.16 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.16 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.16 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.16 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.16 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.15 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.15 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.15 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.15 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.15 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.15 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.15 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 99.15 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.15 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.14 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.14 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.14 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.14 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.14 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 99.14 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.14 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.14 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.14 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.13 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.13 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.13 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.13 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.13 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.13 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.13 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.13 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.13 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.13 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.13 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.13 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.13 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.13 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 99.12 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.12 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.12 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.12 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.12 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 99.12 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.12 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.11 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.11 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.11 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.11 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.11 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.11 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.11 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.1 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.1 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.1 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.1 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.1 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.1 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.1 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 99.1 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.1 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.1 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 99.1 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.09 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 99.09 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.09 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.09 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.09 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.09 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.08 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.08 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.08 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.08 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.07 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.07 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.07 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 99.07 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.07 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.07 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.07 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.07 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.06 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 99.06 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.06 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.05 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.05 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 99.05 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.05 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 99.04 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.04 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.04 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 99.04 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.04 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.04 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.03 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.03 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.02 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.02 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.02 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.02 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.02 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 99.01 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.01 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.01 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.01 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.01 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 99.0 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 99.0 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 99.0 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.99 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 98.99 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 98.99 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 98.99 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 98.98 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 98.98 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 98.98 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 98.98 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 98.98 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 98.98 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 98.98 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 98.98 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.98 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 98.98 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 98.97 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 98.97 | |
| PTZ00284 | 467 | protein kinase; Provisional | 98.97 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 98.97 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 98.97 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.95 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.95 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.94 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.94 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 98.92 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 98.91 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 98.91 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 98.9 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 98.9 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.89 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 98.89 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 98.87 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 98.87 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.87 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 98.87 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 98.87 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 98.86 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 98.86 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 98.85 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 98.85 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 98.85 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 98.85 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.85 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 98.84 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 98.84 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 98.84 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.83 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.83 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.83 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 98.81 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 98.81 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 98.8 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 98.79 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 98.79 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 98.79 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 98.77 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 98.75 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 98.74 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 98.73 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 98.71 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 98.71 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 98.69 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 98.69 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 98.67 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 98.65 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 98.64 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 98.61 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 98.61 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 98.58 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 98.49 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.46 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.45 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 98.42 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 98.4 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 98.4 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.37 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 98.35 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 98.35 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 98.33 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 98.28 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 98.26 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 98.25 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 98.25 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 98.23 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 98.23 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 98.21 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.08 | |
| smart00090 | 237 | RIO RIO-like kinase. | 98.05 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 98.05 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 98.03 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 98.03 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.01 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.99 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 97.97 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 97.96 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.87 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 97.85 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.85 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.82 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.81 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.78 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 97.77 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.75 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 97.74 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.72 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 97.7 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 97.68 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 97.61 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.55 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 97.5 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.45 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 97.37 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 97.29 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.26 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.24 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.2 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 97.11 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 97.07 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.02 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 96.97 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.91 | |
| PRK04750 | 537 | ubiB putative ubiquinone biosynthesis protein UbiB | 96.91 | |
| cd05154 | 223 | ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an | 96.8 | |
| PRK01723 | 239 | 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | 96.73 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 96.62 | |
| KOG3741 | 655 | consensus Poly(A) ribonuclease subunit [RNA proces | 96.58 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 96.57 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 95.66 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.54 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.52 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.47 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 95.45 | |
| cd05151 | 170 | ChoK Choline Kinase (ChoK). The ChoK subfamily is | 95.43 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.22 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-97 Score=909.18 Aligned_cols=744 Identities=37% Similarity=0.593 Sum_probs=654.9
Q ss_pred CHHHHHHHHHHHHhcCCCCccccCCCCCCCCCCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCC
Q 040849 31 NETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNS 110 (809)
Q Consensus 31 ~~~~~~~ll~~k~~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~ 110 (809)
+++|++||++||+++. +|.+.+.+|+..++||.|.||+|++ .++|+.|+|+++.++|.+++.+..+++|++|||++|+
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 6789999999999996 7877889998888999999999986 4799999999999999999999999999999999999
Q ss_pred CCccCCcccc-ccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCc
Q 040849 111 FRNEIPQEIG-YLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPS 189 (809)
Q Consensus 111 l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 189 (809)
+++.+|..+. .+++|++|+|++|.+++.+|. +.+++|++|+|++|.+.+.+|..++.+++|++|+|++|.+.+.+|.
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 9999998765 999999999999999998886 5689999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCC
Q 040849 190 SFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269 (809)
Q Consensus 190 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~ 269 (809)
.++++++|++|++++|.+++.+|..++++++|+.|++++|++++.+|..+.++++|++|++++|.+++.+|..+. .+++
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~ 261 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKN 261 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 8999
Q ss_pred CcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC-CCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCcc
Q 040849 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLE 348 (809)
Q Consensus 270 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~ 348 (809)
|++|++++|.+++.+|..+.++++|+.|++++|.+.+.+|. +..+++|+.|+++.|.+.+..+ ..+..+++|+
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~l~~L~ 335 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------VALTSLPRLQ 335 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC------hhHhcCCCCC
Confidence 99999999999999999999999999999999999998887 8999999999999999987554 3456788999
Q ss_pred EEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCC
Q 040849 349 LLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428 (809)
Q Consensus 349 ~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 428 (809)
.|+++.|.+.+.+|..+..+. +|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 336 ~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 336 VLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred EEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 999999999999999988875 4999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCC
Q 040849 429 KFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLP 508 (809)
Q Consensus 429 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p 508 (809)
++++..|..|.+++.|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ +..++ +.|++++|++++.+|
T Consensus 415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L-~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRL-ENLDLSRNQFSGAVP 492 (968)
T ss_pred EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccc-eEEECcCCccCCccC
Confidence 9999999999999999999999999999999999999999999999999999888765 45777 799999999999999
Q ss_pred CCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCC
Q 040849 509 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLF 588 (809)
Q Consensus 509 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 588 (809)
..+..+++|+.|+|++|++++.+|..+.++++|++|+|++|.+++.+|..|.++++|+.|||++|+++|.+|..+.++++
T Consensus 493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEccCCcccccCCCCCCCCCCCcccccCCCCCCCCccccCccccccccccccccCCceEEehhhHHHHHHHHHHhhh
Q 040849 589 LQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIPIVTGILLVTGMSCLI 668 (809)
Q Consensus 589 L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~ 668 (809)
|+++++++|+++|.+|..+++.++...++.||+.+||..+....++|... .+. ..+.+++++++++++++++++++
T Consensus 573 L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ 648 (968)
T PLN00113 573 LVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRV---RKT-PSWWFYITCTLGAFLVLALVAFG 648 (968)
T ss_pred cCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccc---ccc-ceeeeehhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655455667431 111 11222222222222222222222
Q ss_pred hhhhccCCcCCC---CC--CCchhh----cccccccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe--
Q 040849 669 ITSWRSKSKRES---AT--PPSALL----ASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-- 737 (809)
Q Consensus 669 ~~~~r~~~~~~~---~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-- 737 (809)
++++|++++.+. .. ..+... .....++++++ ...+...++||+|+||+||+|+....+. .||||
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~vavK~~ 723 (968)
T PLN00113 649 FVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDI---LSSLKEENVISRGKKGASYKGKSIKNGM--QFVVKEI 723 (968)
T ss_pred HHHHHhhhcccccccccccccccccccccccchhhhHHHH---HhhCCcccEEccCCCeeEEEEEECCCCc--EEEEEEc
Confidence 222232221111 00 000000 00112333333 3457778899999999999999755444 89999
Q ss_pred --------------cCCCCcceeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHH
Q 040849 738 --------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803 (809)
Q Consensus 738 --------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~ 803 (809)
++++|||||+++|+|.. ++..|+|||||++|+|.++++. ++|.++.+||.|||+
T Consensus 724 ~~~~~~~~~~~~~l~~l~HpnIv~~~~~~~~-----~~~~~lv~Ey~~~g~L~~~l~~-------l~~~~~~~i~~~ia~ 791 (968)
T PLN00113 724 NDVNSIPSSEIADMGKLQHPNIVKLIGLCRS-----EKGAYLIHEYIEGKNLSEVLRN-------LSWERRRKIAIGIAK 791 (968)
T ss_pred cCCccccHHHHHHHhhCCCCCcceEEEEEEc-----CCCCEEEEeCCCCCcHHHHHhc-------CCHHHHHHHHHHHHH
Confidence 46799999999999876 6678999999999999999952 789999999999999
Q ss_pred HhhhcC
Q 040849 804 ALDYLH 809 (809)
Q Consensus 804 gl~yLH 809 (809)
||+|||
T Consensus 792 ~L~yLH 797 (968)
T PLN00113 792 ALRFLH 797 (968)
T ss_pred HHHHhc
Confidence 999999
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-63 Score=604.98 Aligned_cols=514 Identities=36% Similarity=0.564 Sum_probs=484.2
Q ss_pred CCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCcccc-CCCcCcEEEcccCCCCCCCcccccCCCCCCEEE
Q 040849 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNIS-HCVNLESLRLGFNELVGKVPRKLGSLSKLRTLA 177 (809)
Q Consensus 99 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 177 (809)
.+++.|||++|.+++.+|..|..+++|++|+|++|.+++.+|..+. ++++|++|+|++|.+++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4789999999999999999999999999999999999999998765 999999999999999988885 5689999999
Q ss_pred cccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCccccc
Q 040849 178 VHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257 (809)
Q Consensus 178 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 257 (809)
|++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|+++.|.+++
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC-CCCCCCCcEEEeccccCCCCCCCchh
Q 040849 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSISMNHLGNGEKDDLE 336 (809)
Q Consensus 258 ~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~ 336 (809)
.+|..+. .+++|++|++++|.+++.+|..+.++++|+.|++++|.+.+..|. +..+++|+.|++++|.+.+..+
T Consensus 227 ~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p---- 301 (968)
T PLN00113 227 EIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP---- 301 (968)
T ss_pred cCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC----
Confidence 9999887 899999999999999999999999999999999999999998886 8999999999999999987544
Q ss_pred hhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccC
Q 040849 337 FVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGD 416 (809)
Q Consensus 337 ~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 416 (809)
..+.++++|+.|+++.|.+.+.+|..+..++. |+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..
T Consensus 302 --~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 302 --ELVIQLQNLEILHLFSNNFTGKIPVALTSLPR-LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred --hhHcCCCCCcEEECCCCccCCcCChhHhcCCC-CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 34567889999999999999999999888765 999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEE
Q 040849 417 LHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYL 496 (809)
Q Consensus 417 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L 496 (809)
+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++| +.|
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L 457 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL-QML 457 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC-cEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred EccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcc
Q 040849 497 DLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS 576 (809)
Q Consensus 497 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 576 (809)
++++|++.+.+|..+. .++|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..+.++++|++|+|++|+++
T Consensus 458 ~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 458 SLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 9999999999988764 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEccCCcccccCCCC-CCCCCCCcccccCCCCCC
Q 040849 577 GRIPKYFENFLFLQNLNLSFNHFEGEVPIK-GVFSNSSAVSLDGNDNLC 624 (809)
Q Consensus 577 ~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc 624 (809)
|.+|..|.++++|+.|++++|+++|.+|.. ..+..+...++.+|+..+
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999964 335567777888887443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=346.42 Aligned_cols=186 Identities=26% Similarity=0.297 Sum_probs=103.1
Q ss_pred ccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCC
Q 040849 388 SGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQN 467 (809)
Q Consensus 388 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 467 (809)
..|..+.++++|+|+.|+++..-.+++-++++|+.|+||+|.|...-++.+.-+++|+.|+|++|+|+...+.+|..+..
T Consensus 263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ 342 (873)
T ss_pred cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence 33444555555555555555444455555555555555555555444444444455555555555554444444444444
Q ss_pred CcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCc---cccCCCCCCEE
Q 040849 468 LILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPN---SLGSCVRLEQL 544 (809)
Q Consensus 468 L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L 544 (809)
|+. |+|++|+++..-...|..+++|+.|||++|.+++.+.+ .|.++++|+.|
T Consensus 343 Le~-------------------------LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 343 LEE-------------------------LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred hhh-------------------------hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 444 55555555444444555555666666666666555443 25556666666
Q ss_pred eCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcc
Q 040849 545 GMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHF 599 (809)
Q Consensus 545 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l 599 (809)
+|.+|++..+...+|.++..|+.|||.+|.|..+-|.+|..+ .|+.|.+..-.|
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 666666665555666666666666666666666666666666 566665554333
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=350.81 Aligned_cols=473 Identities=28% Similarity=0.417 Sum_probs=352.1
Q ss_pred EEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEccc
Q 040849 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156 (809)
Q Consensus 77 v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 156 (809)
...++++.|.+. .+.+.+.+|..|.+|++++|++. ..|++++.+..++.|+.++|.++ .+|+.++.+.+|+.|+.++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 345677777776 35667888999999999999987 67888999999999999999988 7888899999999999999
Q ss_pred CCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcc
Q 040849 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIP 236 (809)
Q Consensus 157 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 236 (809)
|.+. .+|+.++.+..|+.|+..+|+++ ..|+.+.++.+|..|++.+|++....|..+. ++.|++||...|.++ .+|
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence 9987 67778888889999999999988 6778888888899999999998866665555 888888888888776 677
Q ss_pred hhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcc-cccCCCCceEecCCCcceeeCCCCCCCC
Q 040849 237 FSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPAS-ISNASHLMRLTIPINGFSGKVPSFGNLH 315 (809)
Q Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~~~~l~ 315 (809)
..++.+.+|..|++..|++. .+| ++. .+..|+.+.++.|++. .+|.. ..+++++..||+.+|++......+..++
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhh
Confidence 78888888888888888887 666 444 5677788888888776 34443 3467777777777777764433355555
Q ss_pred CCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCC-
Q 040849 316 KLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLV- 394 (809)
Q Consensus 316 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~- 394 (809)
+|++||+|+|.+++ +|..++++ +|+.|-+.+|.+...-.+-+..-+
T Consensus 276 sL~rLDlSNN~is~-------------------------------Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 276 SLERLDLSNNDISS-------------------------------LPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQ 322 (565)
T ss_pred hhhhhcccCCcccc-------------------------------CCcccccc--eeeehhhcCCchHHHHHHHHcccHH
Confidence 55666666555543 23344444 366666667766422111110000
Q ss_pred -CCCeee-------CCCcc---c-eec-CCc---cccCCCCCCEEEeeCCeeecccCcCCcCCCC---ccEEEcccccCc
Q 040849 395 -NLERLL-------LEGNQ---F-TGR-IPG---SIGDLHKLQRLGLQGNKFLGEIPSSIGNLTL---LITLSFDKNMLE 455 (809)
Q Consensus 395 -~L~~L~-------Ls~N~---l-~~~-~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~ 455 (809)
-|++|. ++.-+ - ++. .+. ....+.+.+.|++++-+++ .+|+....... ....+++.|++.
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh
Confidence 011110 00000 0 001 111 1233557888999998888 45554433333 678899999997
Q ss_pred ccCCccccCCCCCcE-EeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCcc
Q 040849 456 GSIPSSLGKCQNLIL-LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNS 534 (809)
Q Consensus 456 ~~~p~~l~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 534 (809)
.+|..+..+..+.+ +++++|.++ .+|..+..++++ ..|+|++|-+. .+|..++.+..|+.||+|+|+|. .+|..
T Consensus 402 -elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~ 476 (565)
T KOG0472|consen 402 -ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPEC 476 (565)
T ss_pred -hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHH
Confidence 67877777766544 566666665 889999999999 79999999888 78889999999999999999998 88999
Q ss_pred ccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccc
Q 040849 535 LGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 535 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 600 (809)
+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|++|++++|+|.
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 888888998888889999888888999999999999999998 68889999999999999999998
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=341.30 Aligned_cols=478 Identities=28% Similarity=0.389 Sum_probs=318.7
Q ss_pred CCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEE
Q 040849 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTL 176 (809)
Q Consensus 97 ~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 176 (809)
.-..|+.|++++|.+. .+-..+.++..|.+|++.+|+++ ..|++++.+..++.|+.++|+++ .+|..++.+.+|+.|
T Consensus 43 ~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL 119 (565)
T ss_pred hhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence 3456777777777776 34445667777777777777777 56667777777777777777776 566677777777777
Q ss_pred EcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccc
Q 040849 177 AVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQ 256 (809)
Q Consensus 177 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 256 (809)
+.++|.+. .+|+.++.+..|+.|+..+|+++ ..|+.+..+.+|..+++.+|++....|..+. ++.|+++|...|.++
T Consensus 120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE 196 (565)
T ss_pred hcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh
Confidence 77777776 56666777777777777777776 3455666666666666666666654444444 666666666655554
Q ss_pred cccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchh
Q 040849 257 GSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLE 336 (809)
Q Consensus 257 ~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 336 (809)
.+|.+++ .+.+|+.|+|..|++. ..| .|.++..|.++.++.|.+......
T Consensus 197 -tlP~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae-------------------------- 246 (565)
T KOG0472|consen 197 -TLPPELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAE-------------------------- 246 (565)
T ss_pred -cCChhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHH--------------------------
Confidence 5555555 4555555555555554 333 444444444444444444321111
Q ss_pred hhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccC
Q 040849 337 FVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGD 416 (809)
Q Consensus 337 ~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 416 (809)
.+.++.++.+||+..|++. .+|+.+.-+. +|++||+|+|.++ ..|..++++ .|+.|-+.+|.+...-.+.+.+
T Consensus 247 ---~~~~L~~l~vLDLRdNklk-e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 247 ---HLKHLNSLLVLDLRDNKLK-EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred ---Hhcccccceeeeccccccc-cCchHHHHhh-hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence 1222333333333333333 3344444432 2666666666666 345566666 6666666666654211111110
Q ss_pred CC--CCCEEE-------eeCCee----ecc-cCcCC---cCCCCccEEEcccccCcccCCccccCCCC---CcEEeCcCC
Q 040849 417 LH--KLQRLG-------LQGNKF----LGE-IPSSI---GNLTLLITLSFDKNMLEGSIPSSLGKCQN---LILLGLSNN 476 (809)
Q Consensus 417 l~--~L~~L~-------Ls~N~l----~~~-~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N 476 (809)
-+ -|++|. ++.-+= .+. .+..| ..+.+.+.|+++.-+++ .+|........ ....+++.|
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskN 398 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKN 398 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccc
Confidence 00 011110 000000 000 11112 23456788999998888 55655444333 788999999
Q ss_pred cCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccc
Q 040849 477 NLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIP 556 (809)
Q Consensus 477 ~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 556 (809)
++. ++|..+..+..+.+.+++++|.++ .+|..+..+++|+.|+|++|-+. .+|.+++.+..|+.||+|.|+|. .+|
T Consensus 399 qL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 399 QLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLP 474 (565)
T ss_pred hHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cch
Confidence 998 899988888888677888888877 78889999999999999999988 89999999999999999999998 889
Q ss_pred hhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCCCCCCCCCcccccCCCC
Q 040849 557 SSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDN 622 (809)
Q Consensus 557 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~ 622 (809)
...-.+..++.+-.++|++....|+.+.++..|.+||+.+|.+....|.-+...++....+.|||.
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 988888889999999999998888889999999999999999998888778888899999999973
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=328.17 Aligned_cols=366 Identities=20% Similarity=0.232 Sum_probs=290.2
Q ss_pred CccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 040849 100 FLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVH 179 (809)
Q Consensus 100 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 179 (809)
.-+.||+|+|.++.+.+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|++||||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4467999999999888999999999999999999998 778766667779999999999998888889999999999999
Q ss_pred cccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCccccccc
Q 040849 180 YNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSL 259 (809)
Q Consensus 180 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 259 (809)
.|.|+.....+|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|.+++.|+.|+|..|++. .+
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-iv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-ee
Confidence 99998666677888888999999999999888888999999999999999999888888888999999999888886 33
Q ss_pred ChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC-CCCCCCCcEEEeccccCCCCCCCchhhh
Q 040849 260 PSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSISMNHLGNGEKDDLEFV 338 (809)
Q Consensus 260 p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 338 (809)
....+..+++|+.|.|..|.+.......|-.+.++++|+|+.|+++..-.. +.+++.|+.|++|+|.+..+..+.|+|
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf- 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF- 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh-
Confidence 333345788888888888888877777788888888888888888765544 777888888888888888877777764
Q ss_pred hcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCc---ccc
Q 040849 339 NSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPG---SIG 415 (809)
Q Consensus 339 ~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~~~ 415 (809)
+++|+.|++++|.++..-+..+..+.. |+.|+|++|.+...-...|..+.+|++|||++|.++..+.+ .|.
T Consensus 316 -----tqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 316 -----TQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred -----cccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 356777777777777666666665543 77777777777766666777777777777777777765543 466
Q ss_pred CCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcC
Q 040849 416 DLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSN 475 (809)
Q Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 475 (809)
++++|+.|++.+|++....-.+|.++..|++|||.+|.|..+-|.+|..+ .|+.|-+..
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 77777777777777776666677777777777777777777777777776 666665543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=352.00 Aligned_cols=473 Identities=27% Similarity=0.319 Sum_probs=256.9
Q ss_pred cCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCC
Q 040849 91 LSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSL 170 (809)
Q Consensus 91 ~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 170 (809)
||..+..-..++.|+++.|.+-...-+...+.-+|+.||+++|+++ ..|..+..+.+|+.|+++.|.+. ..|.+..++
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~ 90 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNM 90 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhh
Confidence 3333333344555666666544222222233334666666655554 45555555555666666665554 344555555
Q ss_pred CCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceecc
Q 040849 171 SKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEF 250 (809)
Q Consensus 171 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 250 (809)
.+|++|.|.+|.+. ..|..+..+++|+.|+++.|++. .+|..+..++.++.+..++|.-... ++... ++.+++
T Consensus 91 ~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l 163 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDL 163 (1081)
T ss_pred hcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhh
Confidence 56666666555555 45555555556666666665554 3455555555555555555511111 11111 455555
Q ss_pred CCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCC
Q 040849 251 PVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNG 330 (809)
Q Consensus 251 ~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 330 (809)
..|.+.+.++.++. .+.. .|||.+|.+. -..+..+.+|+.+....|+++... -..++++.|+.++|.+...
T Consensus 164 ~~n~l~~~~~~~i~-~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~ 234 (1081)
T KOG0618|consen 164 RLNVLGGSFLIDIY-NLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTL 234 (1081)
T ss_pred hhhhcccchhcchh-hhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceee
Confidence 55555555554443 2222 3555555554 122344445555555555443221 1233455555555555421
Q ss_pred CCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecC
Q 040849 331 EKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRI 410 (809)
Q Consensus 331 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 410 (809)
.. ......|+.++++.|++++. |+|+..+.. |+.++..+|+++ .+|..+....+|+.|++..|.+. -+
T Consensus 235 ~~--------~p~p~nl~~~dis~n~l~~l-p~wi~~~~n-le~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yi 302 (1081)
T KOG0618|consen 235 DV--------HPVPLNLQYLDISHNNLSNL-PEWIGACAN-LEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YI 302 (1081)
T ss_pred cc--------ccccccceeeecchhhhhcc-hHHHHhccc-ceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hC
Confidence 11 11223455555555555533 355555443 555666555553 44555555555555655555555 44
Q ss_pred CccccCCCCCCEEEeeCCeeecccCcCCcCCCC-ccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcc
Q 040849 411 PGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTL-LITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGL 489 (809)
Q Consensus 411 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 489 (809)
|....+++.|++|+|..|++....+..+.-+.. |..|..+.|.+....-..=...+.|+.|++.+|.++...-..+.+.
T Consensus 303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 445555566666666666555333322222222 4555555555542221111224557777777777776666666677
Q ss_pred cCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEe
Q 040849 490 SSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLD 569 (809)
Q Consensus 490 ~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld 569 (809)
..| +.|+|++|++.......+.++..|+.|+||+|+++ .+|.++..+..|++|...+|++. ..| .+..+++|+.+|
T Consensus 383 ~hL-KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHL-KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cce-eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 777 67777777777555566777777777777777777 66777777777777777777777 455 677777777777
Q ss_pred CCCCCcccc-cccccccCCCCCeEEccCCc
Q 040849 570 LSRNNLSGR-IPKYFENFLFLQNLNLSFNH 598 (809)
Q Consensus 570 Ls~N~l~~~-~p~~~~~l~~L~~l~ls~N~ 598 (809)
+|.|+|+.. +|.... -++|++||+++|.
T Consensus 459 lS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 777777643 233222 2677777777776
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=344.27 Aligned_cols=485 Identities=28% Similarity=0.334 Sum_probs=347.3
Q ss_pred EEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEccc
Q 040849 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156 (809)
Q Consensus 77 v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 156 (809)
++.+++..|.+-..--+.+.+.-+|+.|||++|.+. ..|..+..+.+|+.|+++.|.+. .+|.+.+++.+|++|.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 555556555432211122233334888888888876 67888888888888888888887 6677888888888888888
Q ss_pred CCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcc
Q 040849 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIP 236 (809)
Q Consensus 157 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 236 (809)
|.+. ..|..+..+++|++|++++|.+. .+|..+..++.++.+..++|..... ++... ++.+++..|.+.+.++
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFL 173 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchh
Confidence 8876 67888888888888888888887 7788888888888888888832222 23333 7778888888888888
Q ss_pred hhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCC
Q 040849 237 FSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHK 316 (809)
Q Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~ 316 (809)
..+..++. .|++..|.+. .. ++. .+++|+.+....|+++... -..++++.|+.+.|.+....+. ..-.+
T Consensus 174 ~~i~~l~~--~ldLr~N~~~-~~--dls-~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~-p~p~n 242 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEME-VL--DLS-NLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH-PVPLN 242 (1081)
T ss_pred cchhhhhe--eeecccchhh-hh--hhh-hccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc-ccccc
Confidence 77777776 7888888776 21 122 5677888888888776321 1346678888888887743333 23457
Q ss_pred CcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCC
Q 040849 317 LQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNL 396 (809)
Q Consensus 317 L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 396 (809)
|+++++++|++++.. ..+..+.+|+.++..+|.+ ..+|..+..... |+.|.+.+|.+. .+|.....+..|
T Consensus 243 l~~~dis~n~l~~lp-------~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~-L~~l~~~~nel~-yip~~le~~~sL 312 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLP-------EWIGACANLEALNANHNRL-VALPLRISRITS-LVSLSAAYNELE-YIPPFLEGLKSL 312 (1081)
T ss_pred ceeeecchhhhhcch-------HHHHhcccceEecccchhH-HhhHHHHhhhhh-HHHHHhhhhhhh-hCCCccccccee
Confidence 888888888887643 3456677888888888888 566776666654 888888888887 456677778888
Q ss_pred CeeeCCCccceecCCccccCCCC-CCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcC
Q 040849 397 ERLLLEGNQFTGRIPGSIGDLHK-LQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSN 475 (809)
Q Consensus 397 ~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 475 (809)
++|||..|++....+..+..... |..|+.+.|++.......=..++.|+.|++.+|.+++.....+.+.++|++|+|++
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 88888888887544444444444 77778888877644322223456788888888888888777888888888888888
Q ss_pred CcCccccCc-chhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccc
Q 040849 476 NNLTGTIPT-EVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554 (809)
Q Consensus 476 N~l~~~~p~-~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 554 (809)
|++. .+|. .+.++..| +.|+||+|+++ .+|.++..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++..
T Consensus 393 NrL~-~fpas~~~kle~L-eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 393 NRLN-SFPASKLRKLEEL-EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cccc-cCCHHHHhchHHh-HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 8887 4454 45566666 78888888888 66788888888888888888887 666 788888888888888888754
Q ss_pred -cchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCC
Q 040849 555 -IPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597 (809)
Q Consensus 555 -~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N 597 (809)
+|.... -++|++|||++|.=.-..-..|..+.++..++++-|
T Consensus 468 ~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 468 TLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 333332 278888888888743344455666677777777666
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=313.02 Aligned_cols=388 Identities=29% Similarity=0.443 Sum_probs=249.5
Q ss_pred CCCCccEEeCCCCCCC-ccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCE
Q 040849 97 NLSFLRVLDLKNNSFR-NEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRT 175 (809)
Q Consensus 97 ~l~~L~~LdLs~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 175 (809)
-|+..+-.|+++|.|+ +..|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++. .+-..+..|+.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 3566677777777777 457777777888888888777776 67777888888888888888776 44556777777888
Q ss_pred EEcccccCc-ccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcc
Q 040849 176 LAVHYNNLS-GQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQ 254 (809)
Q Consensus 176 L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 254 (809)
+++.+|++. .-+|..+..+..|++||||+|++. ..|..+..-+++-.|+||+|+|..+....+.+++.|-+|||+.|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 888777764 235666667777777777777776 466667777777777777777664433444455555555555555
Q ss_pred cccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCc
Q 040849 255 LQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDD 334 (809)
Q Consensus 255 l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 334 (809)
+. .+|..+. .+..|++|+|++|.+.-..-
T Consensus 162 Le-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQL------------------------------------------------- 190 (1255)
T KOG0444|consen 162 LE-MLPPQIR-RLSMLQTLKLSNNPLNHFQL------------------------------------------------- 190 (1255)
T ss_pred hh-hcCHHHH-HHhhhhhhhcCCChhhHHHH-------------------------------------------------
Confidence 54 4444444 45555555555555431111
Q ss_pred hhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccc
Q 040849 335 LEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSI 414 (809)
Q Consensus 335 ~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 414 (809)
..+..+++|+.|.+++.+- -...+|.++..+.+|..+|+|.|.+. .+|..+
T Consensus 191 ----rQLPsmtsL~vLhms~TqR------------------------Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 191 ----RQLPSMTSLSVLHMSNTQR------------------------TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred ----hcCccchhhhhhhcccccc------------------------hhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 1111222222222222111 11246777778888888888888887 778888
Q ss_pred cCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCce
Q 040849 415 GDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSI 494 (809)
Q Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 494 (809)
.++++|+.|+||+|+|+. +....+...+|++|+++.|+++ .+|.++..+++|+.|.+.+|+++-
T Consensus 242 y~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F-------------- 305 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF-------------- 305 (1255)
T ss_pred hhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc--------------
Confidence 888888888888888773 2233344455666666666665 555556556666555555555541
Q ss_pred EEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCC
Q 040849 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNN 574 (809)
Q Consensus 495 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 574 (809)
. -+|..++.+.+|+.+..++|.+. ..|..+..|..|+.|.|++|++. ..|+++.-++.|+.||+..|.
T Consensus 306 ---------e-GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 306 ---------E-GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ---------c-CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 1 25666777777777888888777 77888888888888888888887 678888888888888888886
Q ss_pred cccccccccccCCCCCeEEcc
Q 040849 575 LSGRIPKYFENFLFLQNLNLS 595 (809)
Q Consensus 575 l~~~~p~~~~~l~~L~~l~ls 595 (809)
---..|..-..-.+|..-++.
T Consensus 374 nLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 374 NLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CccCCCCcchhhhcceeeecc
Confidence 443444332222444444443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-35 Score=305.13 Aligned_cols=364 Identities=26% Similarity=0.372 Sum_probs=268.1
Q ss_pred CcEEEEECCCCCCcc-ccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEE
Q 040849 75 QRVTALLLPSLLLQG-SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLR 153 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g-~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 153 (809)
.-|.++|+++|.++| .+|..+..++.++-|.|...++. .+|++++.|.+|++|.+++|++. .+-..++.++.|+.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 468899999999995 68889999999999999999987 79999999999999999999998 5667789999999999
Q ss_pred cccCCCCC-CCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCC
Q 040849 154 LGFNELVG-KVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232 (809)
Q Consensus 154 Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 232 (809)
+..|++.. .+|..+..+..|+.||||+|+++ ..|..+.+-+++-+|+||+|+|..+.-..|.+++.|-+||||+|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 99999863 57888999999999999999999 78999999999999999999999665567889999999999999998
Q ss_pred CCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCcccc-ccCCcccccCCCCceEecCCCcceeeCCCC
Q 040849 233 GEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFT-GPIPASISNASHLMRLTIPINGFSGKVPSF 311 (809)
Q Consensus 233 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 311 (809)
..|..+..+..|++|+|++|.+.-.--..+. .+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+.
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp------ 235 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP------ 235 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC------
Confidence 6677889999999999999977532112222 4566777777776533 234555444444444444444332
Q ss_pred CCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCcccc
Q 040849 312 GNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLR 391 (809)
Q Consensus 312 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 391 (809)
.+|+.+..+.+ |+.|+||+|+|+. +....+
T Consensus 236 ------------------------------------------------~vPecly~l~~-LrrLNLS~N~ite-L~~~~~ 265 (1255)
T KOG0444|consen 236 ------------------------------------------------IVPECLYKLRN-LRRLNLSGNKITE-LNMTEG 265 (1255)
T ss_pred ------------------------------------------------cchHHHhhhhh-hheeccCcCceee-eeccHH
Confidence 22333333332 5555555555552 233344
Q ss_pred CCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeee-cccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcE
Q 040849 392 NLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFL-GEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLIL 470 (809)
Q Consensus 392 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 470 (809)
.-.+|++|++|.|+++ ..|.+++++++|+.|.+.+|+++ .-+|+.++.+..|+.+..++|.+. .+|..+..|..|+.
T Consensus 266 ~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK 343 (1255)
T ss_pred HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence 4556777777777776 66777777777777777777765 235666666666666666666665 66666666666666
Q ss_pred EeCcCCcCccccCcchhcccCCceEEEccCCcC
Q 040849 471 LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQL 503 (809)
Q Consensus 471 L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l 503 (809)
|.|+.|++- .+|+.+.-++.+ ..||+..|.-
T Consensus 344 L~L~~NrLi-TLPeaIHlL~~l-~vLDlreNpn 374 (1255)
T KOG0444|consen 344 LKLDHNRLI-TLPEAIHLLPDL-KVLDLRENPN 374 (1255)
T ss_pred hccccccee-echhhhhhcCCc-ceeeccCCcC
Confidence 666666665 566666555655 4566666543
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=254.63 Aligned_cols=363 Identities=22% Similarity=0.276 Sum_probs=187.9
Q ss_pred CcEEEEECCCCCCcc--ccCccccCCCCccEEeCCCCC------CCccCCccccccc-cCCccccCCCcCcccCCccccC
Q 040849 75 QRVTALLLPSLLLQG--SLSPHIGNLSFLRVLDLKNNS------FRNEIPQEIGYLF-RLQFLWLDNNTFGGQIPDNISH 145 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g--~~~~~l~~l~~L~~LdLs~n~------l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~ 145 (809)
.+|.++.+.-..+.. .-+..|.++++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..| .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456655543322221 112356677777777775543 2334566665553 4777777777665 556555 3
Q ss_pred CCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEE
Q 040849 146 CVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIG 225 (809)
Q Consensus 146 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 225 (809)
..+|+.|+|++|++. .++..+..+++|++|+|+++...+.+|. ++.+++|++|++++|.....+|..+.++++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 566777777777665 4555566677777777766554334553 56666777777766665555666666666666666
Q ss_pred eecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcce
Q 040849 226 FGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFS 305 (809)
Q Consensus 226 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 305 (809)
+++|..-..+|..+ ++++|+.|++++|...+.+|. ..++|+.|++++|.+. .+|..
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~------------------ 743 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSN------------------ 743 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-ccccc------------------
Confidence 66654333444333 455555555555443333332 1234444444444443 22222
Q ss_pred eeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCccccc
Q 040849 306 GKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGN 385 (809)
Q Consensus 306 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~ 385 (809)
..+++|+.|.+..+....... .+. .++......+++|+.|++++|...+.
T Consensus 744 ------~~l~~L~~L~l~~~~~~~l~~-----------------------~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 744 ------LRLENLDELILCEMKSEKLWE-----------------------RVQ-PLTPLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred ------ccccccccccccccchhhccc-----------------------ccc-ccchhhhhccccchheeCCCCCCccc
Confidence 234444444443322110000 000 00011111223466777777666666
Q ss_pred CCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCC
Q 040849 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKC 465 (809)
Q Consensus 386 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 465 (809)
+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l 868 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKF 868 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcC
Confidence 66667777777777776664433555444 5666666666666544333332 234555566666555 345555555
Q ss_pred CCCcEEeCcCCcCccccCcchhcccCCceEEEccCC
Q 040849 466 QNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQN 501 (809)
Q Consensus 466 ~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N 501 (809)
++|+.|++++|+--..+|..+..++.+ ..+++++|
T Consensus 869 ~~L~~L~L~~C~~L~~l~~~~~~L~~L-~~L~l~~C 903 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRVSLNISKLKHL-ETVDFSDC 903 (1153)
T ss_pred CCCCEEECCCCCCcCccCcccccccCC-CeeecCCC
Confidence 555555555532222344444444444 34444433
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-26 Score=230.13 Aligned_cols=409 Identities=22% Similarity=0.217 Sum_probs=218.3
Q ss_pred ccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEccc-CCCCCCCcccccCCCCCCEEEcc
Q 040849 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF-NELVGKVPRKLGSLSKLRTLAVH 179 (809)
Q Consensus 101 L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls 179 (809)
-..++|..|+|+.+.|.+|+.+++|+.||||+|+|+.+-|++|.++.+|..|-+.+ |+|+....+.|++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 45667777777766667777777777777777777777777777777766665555 66765555667777777777777
Q ss_pred cccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCccccccc
Q 040849 180 YNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSL 259 (809)
Q Consensus 180 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 259 (809)
-|++.-...+.|..+++|..|.+.+|.+....-..|..+..++.+.+..|.+. ...+++.+.... . ..
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----cdCnL~wla~~~-a------~~ 216 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----CDCNLPWLADDL-A------MN 216 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc-----cccccchhhhHH-h------hc
Confidence 77776566666777777777777777766444446666666666666666532 112222222111 0 01
Q ss_pred ChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhh
Q 040849 260 PSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVN 339 (809)
Q Consensus 260 p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 339 (809)
|..+. ...-.....+.++++....+..|... ++.+ |+
T Consensus 217 ~iets-garc~~p~rl~~~Ri~q~~a~kf~c~--~esl-----------~s----------------------------- 253 (498)
T KOG4237|consen 217 PIETS-GARCVSPYRLYYKRINQEDARKFLCS--LESL-----------PS----------------------------- 253 (498)
T ss_pred hhhcc-cceecchHHHHHHHhcccchhhhhhh--HHhH-----------HH-----------------------------
Confidence 11111 12222223333444332222221110 0000 00
Q ss_pred cccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCC
Q 040849 340 SLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHK 419 (809)
Q Consensus 340 ~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 419 (809)
--.+.+...+..|..-+.-.++|++|+|++|+++++-+.+|.++..+++|.|..|++...-...|.++..
T Consensus 254 ----------~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~ 323 (498)
T KOG4237|consen 254 ----------RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG 323 (498)
T ss_pred ----------hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence 0000011111222221222233666666666666666666666666666666666666555556666666
Q ss_pred CCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccC-----Cccc-----------cCCCCCcEEeCcCCcCcc---
Q 040849 420 LQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSI-----PSSL-----------GKCQNLILLGLSNNNLTG--- 480 (809)
Q Consensus 420 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-----p~~l-----------~~l~~L~~L~Ls~N~l~~--- 480 (809)
|+.|+|.+|+|+..-|..|..+.+|.+|.+-.|.+.... .+++ +.-..++.++++.+.+..
T Consensus 324 L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c 403 (498)
T KOG4237|consen 324 LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRC 403 (498)
T ss_pred ceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccccccc
Confidence 666666666666666666666666666666665543110 0000 011123344444433321
Q ss_pred ccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCE-EEccccccccccCccccCCCCCCEEeCcCCccccccchhh
Q 040849 481 TIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGV-LDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSF 559 (809)
Q Consensus 481 ~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 559 (809)
..|++.... -++.-|+ .++-+.. ..-|+..+. .+|..+. ..-.+|++.+|.++ .+|..
T Consensus 404 ~~~ee~~~~-------------~s~~cP~---~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~- 462 (498)
T KOG4237|consen 404 GGPEELGCL-------------TSSPCPP---PCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE- 462 (498)
T ss_pred CCccccCCC-------------CCCCCCC---CcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH-
Confidence 011111000 0011111 1222222 223333333 4554431 23467888888888 55655
Q ss_pred cCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCC
Q 040849 560 SSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597 (809)
Q Consensus 560 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N 597 (809)
.+.+| .+|+|+|+++..--..|.++++|.+|-+|+|
T Consensus 463 -~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 463 -LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 55677 8899999988877888899999999988887
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-26 Score=229.94 Aligned_cols=394 Identities=20% Similarity=0.205 Sum_probs=240.2
Q ss_pred CcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEccc-CcccccCcccccCCCCccEEEee
Q 040849 149 LESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASA-NQFVGQIPKTLSQLKRMRFIGFG 227 (809)
Q Consensus 149 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~ 227 (809)
-..++|..|+|+.+.|.+|+.+++|+.||||+|+|+.+-|+.|..+++|..|-+.+ |+|+......|++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 46788888888888888888888888888888888888888888888877776655 77776666677777777777777
Q ss_pred cCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceee
Q 040849 228 VNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGK 307 (809)
Q Consensus 228 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 307 (809)
-|++.-.....|..+++|..|.+..|.+. .++...+..+..++.+.+..|.+- ...+++.+.... ..+.+
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~i-----cdCnL~wla~~~-a~~~i--- 218 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFI-----CDCNLPWLADDL-AMNPI--- 218 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccc-----cccccchhhhHH-hhchh---
Confidence 77666666666666666666666666555 444433334455555555544421 011111111000 00000
Q ss_pred CCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCC
Q 040849 308 VPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIP 387 (809)
Q Consensus 308 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p 387 (809)
.++...-..-. .+.+.++...-+..+......+..--.+.+...+..|
T Consensus 219 --etsgarc~~p~------------------------------rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP 266 (498)
T KOG4237|consen 219 --ETSGARCVSPY------------------------------RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP 266 (498)
T ss_pred --hcccceecchH------------------------------HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh
Confidence 01111111111 1111222111111111110111111122333333444
Q ss_pred -ccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCC
Q 040849 388 -SGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQ 466 (809)
Q Consensus 388 -~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 466 (809)
..|..+++|+.|+|++|+++++.+.+|.+...++.|.|..|++.......|.++..|++|+|.+|+|+...|.+|..+.
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 3589999999999999999999999999999999999999999877778899999999999999999999999999999
Q ss_pred CCcEEeCcCCcCccccC-cchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccccc---ccCccc-------
Q 040849 467 NLILLGLSNNNLTGTIP-TEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSG---EIPNSL------- 535 (809)
Q Consensus 467 ~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---~~p~~~------- 535 (809)
+|..|+|-.|.+.-.-- .++..+ |..+.-.|. |.+ .....++.++++.+.+.. ..|++.
T Consensus 347 ~l~~l~l~~Np~~CnC~l~wl~~W--------lr~~~~~~~-~~C-q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~ 416 (498)
T KOG4237|consen 347 SLSTLNLLSNPFNCNCRLAWLGEW--------LRKKSVVGN-PRC-QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSP 416 (498)
T ss_pred eeeeeehccCcccCccchHHHHHH--------HhhCCCCCC-CCC-CCCchhccccchhccccccccCCccccCCCCCCC
Confidence 99999999988752111 111111 122222222 211 122345555555554421 122221
Q ss_pred --cCCCCCCE-EeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccc
Q 040849 536 --GSCVRLEQ-LGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 536 --~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
..++.+.+ ..-|++.+. .+|..+. ..-..|++.+|.++ .+|.. .+.+| .+|+|+|+++-
T Consensus 417 cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 417 CPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred CCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 23444543 344555444 4444332 24567899999998 55655 66778 99999999873
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=255.44 Aligned_cols=157 Identities=22% Similarity=0.308 Sum_probs=78.1
Q ss_pred CcccccCC-CCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccC
Q 040849 163 VPRKLGSL-SKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYN 241 (809)
Q Consensus 163 ~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 241 (809)
+|..|..+ .+|+.|++.++.++ .+|..| ...+|+.|++.+|++. .+|..+..+++|+.|+++++.....+|. +..
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 34444433 23555555555554 444444 3455555555555554 2344445555555555555443333432 455
Q ss_pred CCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEE
Q 040849 242 LSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVS 321 (809)
Q Consensus 242 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 321 (809)
+++|+.|++++|.....+|..+. .+++|+.|++++|...+.+|..+ ++++|+.|++++|...+..|.+ ..+|+.|+
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~ 731 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLD 731 (1153)
T ss_pred CCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeee
Confidence 55566666655554445565554 56666666666654434455443 4555666665555433222221 23444455
Q ss_pred eccccC
Q 040849 322 ISMNHL 327 (809)
Q Consensus 322 Ls~n~l 327 (809)
++.|.+
T Consensus 732 L~~n~i 737 (1153)
T PLN03210 732 LDETAI 737 (1153)
T ss_pred cCCCcc
Confidence 544444
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=221.84 Aligned_cols=183 Identities=30% Similarity=0.329 Sum_probs=103.1
Q ss_pred cCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcc
Q 040849 371 RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450 (809)
Q Consensus 371 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 450 (809)
.|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|+++
T Consensus 283 ~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecC
Confidence 46666666666663 333 23566666777766664 3322 1345666666666653 3321 1356666666
Q ss_pred cccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccc
Q 040849 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530 (809)
Q Consensus 451 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 530 (809)
+|+|++ +|.. .++|+.|++++|+|+ .+|... .+| ..|++++|+|++ +|.. .++|+.|++++|+|++
T Consensus 351 ~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L-~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss- 416 (788)
T PRK15387 351 DNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS- 416 (788)
T ss_pred CCccCC-CCCC---Ccccceehhhccccc-cCcccc---ccc-ceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-
Confidence 666663 3332 235566666666666 345432 234 566666666663 3322 2456666666666663
Q ss_pred cCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCccccccccc
Q 040849 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYF 583 (809)
Q Consensus 531 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~ 583 (809)
+|... .+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|++.+|..+
T Consensus 417 IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 417 LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 45432 34556666666666 456666666666666666666666666555
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=222.58 Aligned_cols=263 Identities=29% Similarity=0.379 Sum_probs=198.5
Q ss_pred CCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCc
Q 040849 268 PNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRL 347 (809)
Q Consensus 268 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L 347 (809)
..-..|++++|.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++.
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lts------------------ 256 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS------------------ 256 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCc------------------
Confidence 34667888888887 5677665 367888888887764 332 13556666666665543
Q ss_pred cEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeC
Q 040849 348 ELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQG 427 (809)
Q Consensus 348 ~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 427 (809)
+|. .+++|+.|++++|.+.. +|.. ..+|+.|++++|+++. +|. ..++|+.|++++
T Consensus 257 -------------LP~----lp~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~ 311 (788)
T PRK15387 257 -------------LPV----LPPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSD 311 (788)
T ss_pred -------------ccC----cccccceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCC
Confidence 222 12458899999999874 4442 3578899999999984 554 247899999999
Q ss_pred CeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccC
Q 040849 428 NKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTL 507 (809)
Q Consensus 428 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~ 507 (809)
|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|+|++|+|+ .+|... .++ ..|++++|++++ +
T Consensus 312 N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~lp---~~L-~~L~Ls~N~L~~-L 377 (788)
T PRK15387 312 NQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTLP---SEL-YKLWAYNNRLTS-L 377 (788)
T ss_pred Ccccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCCC---ccc-ceehhhcccccc-C
Confidence 99986 4443 2468889999999985 5542 258999999999999 466533 344 678999999995 5
Q ss_pred CCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCC
Q 040849 508 PSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFL 587 (809)
Q Consensus 508 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~ 587 (809)
|.. ..+|+.|++++|+|++ +|.. .++|+.|++++|+|++ +|..+ .+|+.|++++|+|+ .+|..+.+++
T Consensus 378 P~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~ 445 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLS 445 (788)
T ss_pred ccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhcc
Confidence 643 3679999999999994 6654 3679999999999995 66543 46889999999998 6899999999
Q ss_pred CCCeEEccCCcccccCCC
Q 040849 588 FLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 588 ~L~~l~ls~N~l~g~~p~ 605 (809)
.|+.|++++|+|+|.+|.
T Consensus 446 ~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 446 SETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCeEECCCCCCCchHHH
Confidence 999999999999998764
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=216.18 Aligned_cols=315 Identities=22% Similarity=0.316 Sum_probs=155.7
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCccccCC----CCCCCCCCcccc----------------cccCCCCCcEEEEECCCCC
Q 040849 27 MHKSNETDQLALLEFKAKVTHDPLEVLSS----WNYSRHFCQWKG----------------VTCSPRHQRVTALLLPSLL 86 (809)
Q Consensus 27 ~~~~~~~~~~~ll~~k~~~~~~~~~~l~~----W~~~~~~c~w~g----------------v~c~~~~~~v~~l~l~~~~ 86 (809)
.....++|.+.+++..+.+...+ .+.+ |....++|.-+. |.|.. +.||.+..-+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~--~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~ 132 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPA--YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESE 132 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCc--hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccc
Confidence 34557889999999999986443 3444 998889997554 56653 456665544322
Q ss_pred CccccCc----------------------------cc-----cCCCCccEEeCCCCCCCccCCccccccccCCccccCCC
Q 040849 87 LQGSLSP----------------------------HI-----GNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNN 133 (809)
Q Consensus 87 l~g~~~~----------------------------~l-----~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N 133 (809)
....-.. .+ +--.+...|++++++++ .+|..+. +.|+.|+|++|
T Consensus 133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N 209 (754)
T PRK15370 133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNN 209 (754)
T ss_pred ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCC
Confidence 1111000 00 11123455666666555 2444332 34556666666
Q ss_pred cCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcc
Q 040849 134 TFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPK 213 (809)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 213 (809)
.++ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|++|+++ .+|..+. ++|+.|++++|+++. +|.
T Consensus 210 ~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~ 279 (754)
T PRK15370 210 ELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPE 279 (754)
T ss_pred CCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccc
Confidence 555 3344332 35556666665555 2343332 24555555555555 3444432 345555555555552 343
Q ss_pred cccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCC
Q 040849 214 TLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASH 293 (809)
Q Consensus 214 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 293 (809)
.+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++. +|..+. ++
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt~-------------------------LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~s 326 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIRT-------------------------LPAHLP---SGITHLNVQSNSLTA-LPETLP--PG 326 (754)
T ss_pred ccC--CCCcEEECCCCcccc-------------------------Ccccch---hhHHHHHhcCCcccc-CCcccc--cc
Confidence 332 245555555555543 332221 234455555555542 232221 34
Q ss_pred CceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCc
Q 040849 294 LMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLR 373 (809)
Q Consensus 294 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~ 373 (809)
|+.|++++|.+++....+. ++|+.|++++|+++.. |..+ +++|+
T Consensus 327 L~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~L-------------------------------P~~l---p~~L~ 370 (754)
T PRK15370 327 LKTLEAGENALTSLPASLP--PELQVLDVSKNQITVL-------------------------------PETL---PPTIT 370 (754)
T ss_pred ceeccccCCccccCChhhc--CcccEEECCCCCCCcC-------------------------------Chhh---cCCcC
Confidence 5555555555543211121 3455555555554421 1111 12355
Q ss_pred EEEccCCcccccCCccccCCCCCCeeeCCCccceecCCc----cccCCCCCCEEEeeCCeee
Q 040849 374 ILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPG----SIGDLHKLQRLGLQGNKFL 431 (809)
Q Consensus 374 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~ 431 (809)
.|++++|+++. +|..+. ..|+.|++++|+++ .+|. .+..++.+..|++.+|.++
T Consensus 371 ~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 371 TLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55555555552 333332 24555666666655 3333 2334466677777777665
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-20 Score=199.44 Aligned_cols=110 Identities=48% Similarity=0.761 Sum_probs=100.1
Q ss_pred ccccccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEe
Q 040849 690 SVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKII 749 (809)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~ 749 (809)
..+.|++.++..+|++|...+.||+|+||.||+|.+.++ + .|||| .+++|||+|+|+
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~-~--~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~Ll 137 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDG-T--VVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLL 137 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCC-C--EEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEE
Confidence 566799999999999999999999999999999999876 4 89999 467899999999
Q ss_pred eeeeccccCCCc-eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 750 TSCASVDFQGND-FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 750 ~~~~~~~~~~~~-~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||.+ .+ ..+||||||++|+|+++|+.+... .++|.+|++||.++|+||+|||
T Consensus 138 GyC~e-----~~~~~~LVYEym~nGsL~d~L~~~~~~--~L~W~~R~kIa~g~A~gL~yLH 191 (361)
T KOG1187|consen 138 GYCLE-----GGEHRLLVYEYMPNGSLEDHLHGKKGE--PLDWETRLKIALGAARGLAYLH 191 (361)
T ss_pred EEEec-----CCceEEEEEEccCCCCHHHHhCCCCCC--CCCHHHHHHHHHHHHHHHHHHc
Confidence 99987 45 599999999999999999976432 7899999999999999999999
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-19 Score=205.81 Aligned_cols=246 Identities=22% Similarity=0.346 Sum_probs=140.1
Q ss_pred CCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccC
Q 040849 293 HLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRL 372 (809)
Q Consensus 293 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L 372 (809)
+...|++++++++.....+. +.++.|++++|+++..... + .++|+.|++++|++. .+|..+. ..|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~-------l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L 243 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPEN-------L--QGNIKTLYANSNQLT-SIPATLP---DTI 243 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChh-------h--ccCCCEEECCCCccc-cCChhhh---ccc
Confidence 45678888888775332232 4688888888888754321 1 135777777777766 3454332 347
Q ss_pred cEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccc
Q 040849 373 RILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452 (809)
Q Consensus 373 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 452 (809)
+.|++++|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|
T Consensus 244 ~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 244 QEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSN 314 (754)
T ss_pred cEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCC
Confidence 77777777766 4455443 36677777777776 3454442 367777777776663 333332 35666666666
Q ss_pred cCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccC
Q 040849 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532 (809)
Q Consensus 453 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 532 (809)
+++. +|..+. ++|+.|++++|.+++ +|..+. ++| +.|++++|+++ .+|..+ .++|+.|+|++|+|+ .+|
T Consensus 315 ~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL-~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP 383 (754)
T PRK15370 315 SLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PEL-QVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLP 383 (754)
T ss_pred cccc-CCcccc--ccceeccccCCcccc-CChhhc--Ccc-cEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCC
Confidence 6663 333322 456666666666663 454332 344 56666666665 344433 245666666666666 344
Q ss_pred ccccCCCCCCEEeCcCCccccccchh----hcCCCCCCEEeCCCCCcc
Q 040849 533 NSLGSCVRLEQLGMNGNFFQGNIPSS----FSSLRGIENLDLSRNNLS 576 (809)
Q Consensus 533 ~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~LdLs~N~l~ 576 (809)
..+. ..|+.|++++|+|+ .+|.. +..++.+..|++.+|.++
T Consensus 384 ~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4432 24666666666665 33332 233355566666666655
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-19 Score=194.18 Aligned_cols=227 Identities=24% Similarity=0.312 Sum_probs=129.1
Q ss_pred CcEEEccCCccc------ccCCccccCCCCCCeeeCCCccceecCCccccCCCC---CCEEEeeCCeeec----ccCcCC
Q 040849 372 LRILRVGNNQLF------GNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHK---LQRLGLQGNKFLG----EIPSSI 438 (809)
Q Consensus 372 L~~L~Ls~n~l~------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~~ 438 (809)
+++++++++.+. ..++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+
T Consensus 53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l 132 (319)
T cd00116 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132 (319)
T ss_pred ceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH
Confidence 555555555444 122344555667777777777665444444443333 7777777776652 222233
Q ss_pred cCC-CCccEEEcccccCccc----CCccccCCCCCcEEeCcCCcCccc----cCcchhcccCCceEEEccCCcCccc---
Q 040849 439 GNL-TLLITLSFDKNMLEGS----IPSSLGKCQNLILLGLSNNNLTGT----IPTEVIGLSSLSIYLDLSQNQLNGT--- 506 (809)
Q Consensus 439 ~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~l~~~L~Ls~N~l~~~--- 506 (809)
..+ ++|+.|++++|.+++. ++..+..+++|+.|++++|.+++. ++..+...+.+ +.|++++|.+++.
T Consensus 133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL-EVLDLNNNGLTDEGAS 211 (319)
T ss_pred HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC-CEEeccCCccChHHHH
Confidence 444 6667777777776632 233455566677777777776632 22333344455 5667777666532
Q ss_pred -CCCCccCCCCCCEEEccccccccccCcccc-----CCCCCCEEeCcCCccc----cccchhhcCCCCCCEEeCCCCCcc
Q 040849 507 -LPSNFGILKNLGVLDVSENKLSGEIPNSLG-----SCVRLEQLGMNGNFFQ----GNIPSSFSSLRGIENLDLSRNNLS 576 (809)
Q Consensus 507 -~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~LdLs~N~l~ 576 (809)
++..+..+++|++|++++|.+++.....+. ..+.|+.|++++|.++ ..+...+..+++|+.+|+++|+++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 233445566777777777777653333222 1357777777777776 223445555667777777777776
Q ss_pred cc----cccccccC-CCCCeEEccCCcc
Q 040849 577 GR----IPKYFENF-LFLQNLNLSFNHF 599 (809)
Q Consensus 577 ~~----~p~~~~~l-~~L~~l~ls~N~l 599 (809)
.. ....+... +.|+.+++.+|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 44 33333334 5677777777654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-18 Score=173.81 Aligned_cols=97 Identities=30% Similarity=0.539 Sum_probs=88.0
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
..++|...+.||+|+||+||+|+++..+. .|||| ++++|||||++++++..
T Consensus 8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~--~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~----- 80 (429)
T KOG0595|consen 8 VVGDYELSREIGSGSFAVVYKGRHKKSGT--EVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIED----- 80 (429)
T ss_pred ccccceehhhccCcceEEEEEeEeccCCc--eEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEec-----
Confidence 34678888999999999999999887655 99999 67899999999999876
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++++|+|||||.||||.+||++++ .+++..+..++.|+|.||++||
T Consensus 81 ~~~i~lVMEyC~gGDLs~yi~~~~----~l~e~t~r~Fm~QLA~alq~L~ 126 (429)
T KOG0595|consen 81 DDFIYLVMEYCNGGDLSDYIRRRG----RLPEATARHFMQQLASALQFLH 126 (429)
T ss_pred CCeEEEEEEeCCCCCHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999763 5899999999999999999998
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-19 Score=188.66 Aligned_cols=229 Identities=25% Similarity=0.274 Sum_probs=174.9
Q ss_pred CcEEEccCCcccc----cCCccccCCCCCCeeeCCCcccee------cCCccccCCCCCCEEEeeCCeeecccCcCCcCC
Q 040849 372 LRILRVGNNQLFG----NIPSGLRNLVNLERLLLEGNQFTG------RIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNL 441 (809)
Q Consensus 372 L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 441 (809)
|+.|+++++.++. .++..+...+++++|+++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 8888888888753 255667788889999999998862 234467778999999999999987666666555
Q ss_pred CC---ccEEEcccccCcc----cCCccccCC-CCCcEEeCcCCcCccc----cCcchhcccCCceEEEccCCcCccc---
Q 040849 442 TL---LITLSFDKNMLEG----SIPSSLGKC-QNLILLGLSNNNLTGT----IPTEVIGLSSLSIYLDLSQNQLNGT--- 506 (809)
Q Consensus 442 ~~---L~~L~L~~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~l~~~L~Ls~N~l~~~--- 506 (809)
.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+..+ +.|++++|.+++.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANNGIGDAGIR 183 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCCCCchHHHH
Confidence 55 9999999999873 233455666 8999999999999843 34455566678 7899999999853
Q ss_pred -CCCCccCCCCCCEEEcccccccccc----CccccCCCCCCEEeCcCCccccccchhhcC-----CCCCCEEeCCCCCcc
Q 040849 507 -LPSNFGILKNLGVLDVSENKLSGEI----PNSLGSCVRLEQLGMNGNFFQGNIPSSFSS-----LRGIENLDLSRNNLS 576 (809)
Q Consensus 507 -~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~LdLs~N~l~ 576 (809)
++..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++.....+.. .+.|+.|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 3334556679999999999987443 445667889999999999998744444332 379999999999997
Q ss_pred ----cccccccccCCCCCeEEccCCcccc
Q 040849 577 ----GRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 577 ----~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
..+...+..++.|+++++++|+++.
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 2344566777899999999999984
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-19 Score=160.72 Aligned_cols=164 Identities=33% Similarity=0.566 Sum_probs=119.8
Q ss_pred ccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCc
Q 040849 390 LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLI 469 (809)
Q Consensus 390 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 469 (809)
+.++.+++.|.|++|+++ .+|+.++.+.+|+.|++++|++. ..|..++.++.|+.|++.-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445666777777888777 56666777788888888888876 56677778888888888888876 7788888888888
Q ss_pred EEeCcCCcCcc-ccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcC
Q 040849 470 LLGLSNNNLTG-TIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNG 548 (809)
Q Consensus 470 ~L~Ls~N~l~~-~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 548 (809)
+|||.+|++.. .+|..|+.+..+ ..|+|++|.+. .+|..++.+++|+.|.+..|.+- ..|.+++.+++|++|++.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tl-ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTL-RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHH-HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 88888888863 567777777777 56777777776 66667777777777777777776 6677777777777777777
Q ss_pred Cccccccchhhc
Q 040849 549 NFFQGNIPSSFS 560 (809)
Q Consensus 549 N~l~~~~p~~~~ 560 (809)
|+++ .+|..++
T Consensus 183 nrl~-vlppel~ 193 (264)
T KOG0617|consen 183 NRLT-VLPPELA 193 (264)
T ss_pred ceee-ecChhhh
Confidence 7776 4444433
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-19 Score=160.48 Aligned_cols=153 Identities=31% Similarity=0.516 Sum_probs=74.7
Q ss_pred cccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEE
Q 040849 122 LFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLS 201 (809)
Q Consensus 122 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 201 (809)
+.+.+.|.||+|.++ .+|+.+..+.+|++|++++|++. .+|.+++++++|+.|+++-|++. ..|..|+.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 344444555555554 44445555555555555555554 45555666666666666666655 5566666666666666
Q ss_pred cccCccc-ccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccc
Q 040849 202 ASANQFV-GQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280 (809)
Q Consensus 202 Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l 280 (809)
|.+|++. ...|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ++|.+++ .+..|+.|.+.+|++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhccccee
Confidence 6655553 233444444444444444444443 23333334444444444443333 3343333 333333344444433
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=181.96 Aligned_cols=152 Identities=29% Similarity=0.437 Sum_probs=111.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCccccCCCCCCCCCC----cccccccCCC--C--CcEEEEECCCCCCccccCccccCCC
Q 040849 28 HKSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFC----QWKGVTCSPR--H--QRVTALLLPSLLLQGSLSPHIGNLS 99 (809)
Q Consensus 28 ~~~~~~~~~~ll~~k~~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~~--~--~~v~~l~l~~~~l~g~~~~~l~~l~ 99 (809)
..+.++|.+||+++|+++. ++. ..+|+. +.|| .|.||.|+.. . .+|+.|+|+++.+.|.+|+.++.++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~--~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPL--RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Ccc--cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 3567889999999999985 443 248963 3342 7999999532 2 2478888888888888888888888
Q ss_pred CccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCC-CCCCEEEc
Q 040849 100 FLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSL-SKLRTLAV 178 (809)
Q Consensus 100 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L 178 (809)
+|+.|+|++|.++|.+|..++.+++|++|+|++|+++|.+|+.++++++|++|+|++|.++|.+|..++.+ .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 88888888888887777777777777777777777777777777777777777777777777777766543 35556666
Q ss_pred ccccC
Q 040849 179 HYNNL 183 (809)
Q Consensus 179 s~N~l 183 (809)
.+|..
T Consensus 523 ~~N~~ 527 (623)
T PLN03150 523 TDNAG 527 (623)
T ss_pred cCCcc
Confidence 66643
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-16 Score=163.52 Aligned_cols=94 Identities=43% Similarity=0.713 Sum_probs=81.0
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc-e
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND-F 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~-~ 762 (809)
+...+.+|+|+||+||+|.++.. . .|||| .+++|||||+++|+|.. +. .
T Consensus 43 l~~~~~iG~G~~g~V~~~~~~g~-~--~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~-----~~~~ 114 (362)
T KOG0192|consen 43 LPIEEVLGSGSFGTVYKGKWRGT-D--VVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTS-----PPGS 114 (362)
T ss_pred hhhhhhcccCCceeEEEEEeCCc-e--eEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC-----CCCc
Confidence 44456699999999999998765 2 39999 34999999999999986 33 6
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..||||||++|+|.++++++ ....+++..+++||.|||+||.|||
T Consensus 115 ~~iVtEy~~~GsL~~~l~~~--~~~~l~~~~~l~~aldiArGm~YLH 159 (362)
T KOG0192|consen 115 LCIVTEYMPGGSLSVLLHKK--RKRKLPLKVRLRIALDIARGMEYLH 159 (362)
T ss_pred eEEEEEeCCCCcHHHHHhhc--ccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999874 2467999999999999999999999
|
|
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-15 Score=163.00 Aligned_cols=107 Identities=31% Similarity=0.504 Sum_probs=90.4
Q ss_pred cHHHHHHhcccccccceeccCCceeEEEEEECCCCc-e-eEEEEe-----------------------cCCCCcceeeEe
Q 040849 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDH-E-TLVAVK-----------------------RSIRHRNLVKII 749 (809)
Q Consensus 695 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~-~-~~vavK-----------------------~~l~H~niv~l~ 749 (809)
..+.|+-.-++....++||+|.||.||+|++...+. . ..|||| +.++|||||++|
T Consensus 148 ~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~y 227 (474)
T KOG0194|consen 148 PRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFY 227 (474)
T ss_pred cccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 344555556667777999999999999999876533 1 238999 578999999999
Q ss_pred eeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 750 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|++.. +.++|||||+|+||+|.++|++.+ ..++..++.+++.|+|+||+|||
T Consensus 228 GVa~~-----~~Pl~ivmEl~~gGsL~~~L~k~~---~~v~~~ek~~~~~~AA~Gl~YLh 279 (474)
T KOG0194|consen 228 GVAVL-----EEPLMLVMELCNGGSLDDYLKKNK---KSLPTLEKLRFCYDAARGLEYLH 279 (474)
T ss_pred EEEcC-----CCccEEEEEecCCCcHHHHHHhCC---CCCCHHHHHHHHHHHHhHHHHHH
Confidence 99876 788999999999999999998653 36899999999999999999998
|
|
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-15 Score=155.23 Aligned_cols=97 Identities=34% Similarity=0.444 Sum_probs=82.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.......+.||+|.||.||||.+.+. .|||| -.++|+||++++++-...+ .+...+
T Consensus 209 l~pl~l~eli~~Grfg~V~KaqL~~~----~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t-~~~~ey 283 (534)
T KOG3653|consen 209 LDPLQLLELIGRGRFGCVWKAQLDNR----LVAVKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGT-ADRMEY 283 (534)
T ss_pred CCchhhHHHhhcCccceeehhhccCc----eeEEEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCC-ccccce
Confidence 45567789999999999999998764 89999 2579999999999844321 124578
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||+||.++|+|.+||..+ .++|.+..+||.-+|+||+|||
T Consensus 284 wLVt~fh~kGsL~dyL~~n-----tisw~~~cria~SmarGLa~LH 324 (534)
T KOG3653|consen 284 WLVTEFHPKGSLCDYLKAN-----TISWNSLCRIAESMARGLAHLH 324 (534)
T ss_pred eEEeeeccCCcHHHHHHhc-----cccHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999854 4899999999999999999999
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=164.27 Aligned_cols=95 Identities=29% Similarity=0.520 Sum_probs=83.4
Q ss_pred ccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
..+.++||.|.||+||+|+++..+ ....|||| ..++||||++|.|+... .+.+
T Consensus 631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTk-----s~Pv 705 (996)
T KOG0196|consen 631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTK-----SKPV 705 (996)
T ss_pred eEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEec-----Ccee
Confidence 456789999999999999987533 34589999 57899999999999765 7889
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yL 808 (809)
+||.|||++|+|+.+|+.+. ..+++.+...|.++||.||.||
T Consensus 706 MIiTEyMENGsLDsFLR~~D---GqftviQLVgMLrGIAsGMkYL 747 (996)
T KOG0196|consen 706 MIITEYMENGSLDSFLRQND---GQFTVIQLVGMLRGIASGMKYL 747 (996)
T ss_pred EEEhhhhhCCcHHHHHhhcC---CceEeehHHHHHHHHHHHhHHH
Confidence 99999999999999999764 4599999999999999999998
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=159.31 Aligned_cols=95 Identities=26% Similarity=0.422 Sum_probs=85.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
..|...+.||+|||+.||+++..+.+. .||+| +.++|||||+++++ |+|.
T Consensus 18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge--~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~-----FEDs 90 (592)
T KOG0575|consen 18 KRYKRGRFLGKGGFARCYEARDLDTGE--VVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHF-----FEDS 90 (592)
T ss_pred ceeeeeeeeccCcceEEEEEEEcCCCc--EEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeE-----eecC
Confidence 458999999999999999999644444 89999 68999999999999 5568
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++|||.|+|++|+|.++++++ +.+++++++.+.+||+.||.|||
T Consensus 91 ~nVYivLELC~~~sL~el~Krr----k~ltEpEary~l~QIv~GlkYLH 135 (592)
T KOG0575|consen 91 NNVYIVLELCHRGSLMELLKRR----KPLTEPEARYFLRQIVEGLKYLH 135 (592)
T ss_pred CceEEEEEecCCccHHHHHHhc----CCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999843 57999999999999999999999
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=165.86 Aligned_cols=101 Identities=31% Similarity=0.569 Sum_probs=85.4
Q ss_pred cccccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
+.+....+.||+|.||+||+|+.... +..+.|||| +.++|||||+|+|+|..
T Consensus 485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~---- 560 (774)
T KOG1026|consen 485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCRE---- 560 (774)
T ss_pred hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEcc----
Confidence 45566778999999999999997542 234589999 57999999999999987
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCC------C----CCCCCHHHHHHHHHHHHHHhhhc
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPE------A----PRNSNLLQRLSIAVDVASALDYL 808 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~------~----~~~~~~~~~~~i~~~ia~gl~yL 808 (809)
++..++|+|||..|||.++|+.+.. . +.+++..+.+.||.|||.||+||
T Consensus 561 -~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YL 619 (774)
T KOG1026|consen 561 -GDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYL 619 (774)
T ss_pred -CCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999986431 1 23388899999999999999998
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-15 Score=160.11 Aligned_cols=104 Identities=32% Similarity=0.487 Sum_probs=88.3
Q ss_pred HHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccc
Q 040849 696 YQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 696 ~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~ 756 (809)
.+.+....+.+...+.||+|.||+||.|.+... . .|||| ++++|+|||+++|+|..
T Consensus 198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~-~--~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~-- 272 (468)
T KOG0197|consen 198 RDPWEIPREELKLIRELGSGQFGEVWLGKWNGS-T--KVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTK-- 272 (468)
T ss_pred cCCeeecHHHHHHHHHhcCCccceEEEEEEcCC-C--cccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEec--
Confidence 344445555677889999999999999999765 3 57777 68999999999999986
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.+|||||||+.|+|.++|+.+ .+..+.-.+.+.||.|||+||+||+
T Consensus 273 ---~~piyIVtE~m~~GsLl~yLr~~--~~~~l~~~~Ll~~a~qIaeGM~YLe 320 (468)
T KOG0197|consen 273 ---QEPIYIVTEYMPKGSLLDYLRTR--EGGLLNLPQLLDFAAQIAEGMAYLE 320 (468)
T ss_pred ---CCceEEEEEecccCcHHHHhhhc--CCCccchHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999973 3466889999999999999999984
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-15 Score=169.09 Aligned_cols=118 Identities=33% Similarity=0.573 Sum_probs=92.8
Q ss_pred CCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEcc
Q 040849 516 NLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLS 595 (809)
Q Consensus 516 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls 595 (809)
.++.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcccccCCCC--CCCCCCCcccccCCCCCCCCccccCccccc
Q 040849 596 FNHFEGEVPIK--GVFSNSSAVSLDGNDNLCGGISELHLSTCS 636 (809)
Q Consensus 596 ~N~l~g~~p~~--~~~~~~~~~~~~~n~~lc~~~~~~~~~~~~ 636 (809)
+|+++|.+|.. ..........+.+|+.+|+.+. +..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~---l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG---LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC---CCCCc
Confidence 88888888854 1223345667889999998542 35664
|
|
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-14 Score=137.58 Aligned_cols=98 Identities=24% Similarity=0.364 Sum_probs=87.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+.++.+|+|.||.||.|+.+.... .||+| +.++||||.++|+++.+
T Consensus 21 l~dfeigr~LgkgkFG~vYlarekks~~--IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd----- 93 (281)
T KOG0580|consen 21 LDDFEIGRPLGKGKFGNVYLAREKKSLF--IVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHD----- 93 (281)
T ss_pred hhhccccccccCCccccEeEeeeccCCc--EEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheec-----
Confidence 4679999999999999999999776655 89999 57899999999999665
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....|+++||.++|+++..|+..+ .+.+++..+..++.|+|.|+.|+|
T Consensus 94 ~~riyLilEya~~gel~k~L~~~~--~~~f~e~~~a~Yi~q~A~Al~y~h 141 (281)
T KOG0580|consen 94 SKRIYLILEYAPRGELYKDLQEGR--MKRFDEQRAATYIKQLANALLYCH 141 (281)
T ss_pred cceeEEEEEecCCchHHHHHHhcc--cccccccchhHHHHHHHHHHHHhc
Confidence 888999999999999999998543 356899999999999999999998
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-14 Score=149.16 Aligned_cols=97 Identities=28% Similarity=0.366 Sum_probs=83.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+.|+..++||+|.||.||||+... +++.||+| ++++|||||+|.+..... ...
T Consensus 117 ~~feki~kIGeGTyg~VYkAr~~~--tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~---~~~ 191 (560)
T KOG0600|consen 117 DSFEKIEKIGEGTYGQVYKARDLE--TGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSK---LSG 191 (560)
T ss_pred HHHHHHHHhcCcchhheeEeeecc--cCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEec---CCc
Confidence 457788999999999999999544 45599999 689999999999987652 246
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+|||+|||+. ||..++... ...|++.++.-|++|++.||+|+|
T Consensus 192 siYlVFeYMdh-DL~GLl~~p---~vkft~~qIKc~mkQLl~Gl~~cH 235 (560)
T KOG0600|consen 192 SIYLVFEYMDH-DLSGLLSSP---GVKFTEPQIKCYMKQLLEGLEYCH 235 (560)
T ss_pred eEEEEEecccc-hhhhhhcCC---CcccChHHHHHHHHHHHHHHHHHh
Confidence 89999999987 898888743 467999999999999999999999
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-14 Score=143.93 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=83.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------------cCCCCcceeeEeeeeecc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------------RSIRHRNLVKIITSCASV 755 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------------~~l~H~niv~l~~~~~~~ 755 (809)
.+.|...+.+|+|+||.|-+|.-+. +++.|||| ++++|||||++++++..
T Consensus 171 ~d~yii~~~LGsGafg~Vkla~e~~--tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~- 247 (475)
T KOG0615|consen 171 NDYYIISKTLGSGAFGLVKLAYEKK--TGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEV- 247 (475)
T ss_pred cceeEeeeeecCCceeEEEEEEEcc--cCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeec-
Confidence 3457788999999999999999544 55599999 57899999999999655
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|||||||+||+|++.+-.+ +.+.++....+++|++.|+.|||
T Consensus 248 ----~ds~YmVlE~v~GGeLfd~vv~n----k~l~ed~~K~~f~Qll~avkYLH 293 (475)
T KOG0615|consen 248 ----PDSSYMVLEYVEGGELFDKVVAN----KYLREDLGKLLFKQLLTAVKYLH 293 (475)
T ss_pred ----CCceEEEEEEecCccHHHHHHhc----cccccchhHHHHHHHHHHHHHHH
Confidence 77889999999999999999754 45778888999999999999999
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-14 Score=140.69 Aligned_cols=94 Identities=28% Similarity=0.315 Sum_probs=82.0
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc-e
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND-F 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~-~ 762 (809)
+.+..+.||+|..|+|||+.++..+ +.+|+| ++.+||+||++||++.. +. .
T Consensus 80 dle~~~~lG~G~gG~V~kv~Hk~t~--~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~-----~~~~ 152 (364)
T KOG0581|consen 80 DLERLGVLGSGNGGTVYKVRHKPTG--KIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYS-----NGEE 152 (364)
T ss_pred HhhhhhhcccCCCcEEEEEEEcCCC--eEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEe-----CCce
Confidence 3455689999999999999976554 499999 56799999999999876 45 6
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.|+||||++|||++++... +.+++....+||.+|++||.|||
T Consensus 153 isI~mEYMDgGSLd~~~k~~----g~i~E~~L~~ia~~VL~GL~YLh 195 (364)
T KOG0581|consen 153 ISICMEYMDGGSLDDILKRV----GRIPEPVLGKIARAVLRGLSYLH 195 (364)
T ss_pred EEeehhhcCCCCHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999743 45899999999999999999998
|
|
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-14 Score=135.83 Aligned_cols=95 Identities=27% Similarity=0.383 Sum_probs=85.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.+|.|+||+|..++.+..+. .+|+| +.+.||.+|++++.+.+ .
T Consensus 44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~--yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d-----~ 116 (355)
T KOG0616|consen 44 QDFERLKTLGTGSFGRVHLVREKHSGN--YYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKD-----N 116 (355)
T ss_pred hhhhheeeeccCccceEEEEEEccCCc--eeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeecc-----C
Confidence 568888999999999999999776544 89999 56789999999998654 8
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+||||||++||.|+.++++. ++++++.++.||.||+.|++|||
T Consensus 117 ~~lymvmeyv~GGElFS~Lrk~----~rF~e~~arFYAAeivlAleylH 161 (355)
T KOG0616|consen 117 SNLYMVMEYVPGGELFSYLRKS----GRFSEPHARFYAAEIVLALEYLH 161 (355)
T ss_pred CeEEEEEeccCCccHHHHHHhc----CCCCchhHHHHHHHHHHHHHHHH
Confidence 8999999999999999999865 45999999999999999999999
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-14 Score=140.90 Aligned_cols=97 Identities=30% Similarity=0.437 Sum_probs=86.5
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
..++|+..++||+|+||+||.++.++ +++.+|+| .+++||.||+++.. ||
T Consensus 23 ~~~dF~~lkviGkG~fGkV~~Vrk~d--t~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ys-----FQ 95 (357)
T KOG0598|consen 23 GPDDFEILKVIGKGSFGKVFQVRKKD--TGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYS-----FQ 95 (357)
T ss_pred ChhheeeeeeeeccCCceEEEEEEcc--cCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEe-----cc
Confidence 35679999999999999999999664 55599999 46899999999987 56
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++.+|+|+||+.||+|+..|++. ..+++..+.-|+.+|+.||.|||
T Consensus 96 t~~kLylVld~~~GGeLf~hL~~e----g~F~E~~arfYlaEi~lAL~~LH 142 (357)
T KOG0598|consen 96 TEEKLYLVLDYLNGGELFYHLQRE----GRFSEDRARFYLAEIVLALGYLH 142 (357)
T ss_pred cCCeEEEEEeccCCccHHHHHHhc----CCcchhHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999854 46999999999999999999999
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-14 Score=151.39 Aligned_cols=99 Identities=30% Similarity=0.503 Sum_probs=86.9
Q ss_pred HHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeec
Q 040849 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCAS 754 (809)
Q Consensus 697 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~ 754 (809)
++|....+.+...+.||+|+||+||||.+.+ .|||| ++-||.||+=+.|||..
T Consensus 385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG-----dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~ 459 (678)
T KOG0193|consen 385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHG-----DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMN 459 (678)
T ss_pred cccccCHHHhhccceeccccccceeeccccc-----ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcC
Confidence 5666666777888999999999999999864 49999 67899999999999975
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...||.-+|+|-+|+.+||..+ .+++..+...||+|||+||.|||
T Consensus 460 ------p~~AIiTqwCeGsSLY~hlHv~e---tkfdm~~~idIAqQiaqGM~YLH 505 (678)
T KOG0193|consen 460 ------PPLAIITQWCEGSSLYTHLHVQE---TKFDMNTTIDIAQQIAQGMDYLH 505 (678)
T ss_pred ------CceeeeehhccCchhhhhccchh---hhhhHHHHHHHHHHHHHhhhhhh
Confidence 34599999999999999999654 56899999999999999999999
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-15 Score=142.84 Aligned_cols=102 Identities=26% Similarity=0.331 Sum_probs=86.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
..+|.+.++||+|+||+|||+.....+. .||.| +.++|||||++++.-.. ++.
T Consensus 18 l~~y~Il~~IG~GsFg~vykv~~~~~g~--l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~---~~~ 92 (375)
T KOG0591|consen 18 LADYQILKKIGRGSFGEVYKVQCLLDGK--LVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFI---EDN 92 (375)
T ss_pred HHHHHHHHHHcCCcchheEEeeeccCcc--hhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhh---ccc
Confidence 3468888999999999999999655444 89988 68999999999984321 224
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.++||||||+.|||.+.|+.-+.+++.++++.++++..|+++||..+|
T Consensus 93 evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH 141 (375)
T KOG0591|consen 93 EVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCH 141 (375)
T ss_pred hhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHh
Confidence 4489999999999999999876666778999999999999999999998
|
|
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-14 Score=146.95 Aligned_cols=96 Identities=28% Similarity=0.450 Sum_probs=83.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCC-CcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIR-HRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~-H~niv~l~~~~~~~~~~~~ 760 (809)
.+.|...+++|.|+||.||+|+-...+. .|||| +++. |||||++.+++.+ .
T Consensus 9 m~RY~~i~klGDGTfGsV~la~~~~~~~--~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d-----~ 81 (538)
T KOG0661|consen 9 MDRYTVIRKLGDGTFGSVYLAKSKETGE--LVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRD-----N 81 (538)
T ss_pred HHHHHHHHHhcCCcceeEEEeeecCCCc--eeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhc-----c
Confidence 3568889999999999999999665544 89999 5777 9999999999765 4
Q ss_pred c-eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 D-FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~-~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+ .+|+|||||+. +|+++++.+ ++.+++.++..|+.||++||+|+|
T Consensus 82 ~~~L~fVfE~Md~-NLYqLmK~R---~r~fse~~irnim~QilqGL~hiH 127 (538)
T KOG0661|consen 82 DRILYFVFEFMDC-NLYQLMKDR---NRLFSESDIRNIMYQILQGLAHIH 127 (538)
T ss_pred CceEeeeHHhhhh-hHHHHHhhc---CCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4 89999999975 999999876 367999999999999999999998
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-14 Score=147.51 Aligned_cols=104 Identities=27% Similarity=0.496 Sum_probs=91.3
Q ss_pred HHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccc
Q 040849 696 YQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 696 ~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~ 756 (809)
+++|+....+.....++|-|.||.||.|.|+...- .|||| +.++|||+|+|+|+|..
T Consensus 259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkysl--TvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~-- 334 (1157)
T KOG4278|consen 259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSL--TVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTH-- 334 (1157)
T ss_pred cchhhccchheeeeeccCCCcccceeeeeeeccce--eeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhcc--
Confidence 36777777888999999999999999999987655 89999 68999999999999987
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yL 808 (809)
+..+|||.|||.+|+|.+||+++.. ..++--..+.||.||+.||+||
T Consensus 335 ---EpPFYIiTEfM~yGNLLdYLRecnr--~ev~avvLlyMAtQIsSaMeYL 381 (1157)
T KOG4278|consen 335 ---EPPFYIITEFMCYGNLLDYLRECNR--SEVPAVVLLYMATQISSAMEYL 381 (1157)
T ss_pred ---CCCeEEEEecccCccHHHHHHHhch--hhcchhHHHHHHHHHHHHHHHH
Confidence 7789999999999999999997642 3466667899999999999998
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-13 Score=156.62 Aligned_cols=102 Identities=30% Similarity=0.532 Sum_probs=86.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCc---eeEEEEe---------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDH---ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~---~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.+..+..+.||+|.||.||+|++.+-.. ...|||| ++++|||||+++|+|..
T Consensus 691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~---- 766 (1025)
T KOG1095|consen 691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD---- 766 (1025)
T ss_pred hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecC----
Confidence 4556778999999999999999875422 3358999 68899999999999986
Q ss_pred CCceEEEEEeccCCCChhhhhcCCC---CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKP---EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~---~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....+|++|||++|||..+|++.+ .+...+...+.+.+|.|||+||.||+
T Consensus 767 -~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe 819 (1025)
T KOG1095|consen 767 -SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE 819 (1025)
T ss_pred -CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH
Confidence 677899999999999999999753 22456889999999999999999995
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.5e-15 Score=154.72 Aligned_cols=170 Identities=32% Similarity=0.517 Sum_probs=98.7
Q ss_pred CEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccC
Q 040849 421 QRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQ 500 (809)
Q Consensus 421 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~ 500 (809)
...|++.|++. .+|..+..+..|+.+.|..|.+. .+|.++.++..|+++||+.|+++ ..|..++.++ | ..|.+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L-kvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L-KVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c-eeEEEec
Confidence 34455555554 44555555555555555555554 45555555555666666666655 4555554443 2 3455666
Q ss_pred CcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccc
Q 040849 501 NQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP 580 (809)
Q Consensus 501 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 580 (809)
|+++ .+|..++.+..|..||.|.|.+. .+|..++++.+|+.|+++.|++. ..|+.+..| .|..||+|+|+++ .||
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence 6665 45555556666666666666665 55666666666666666666666 344445543 3566666666666 556
Q ss_pred cccccCCCCCeEEccCCccc
Q 040849 581 KYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 581 ~~~~~l~~L~~l~ls~N~l~ 600 (809)
-.|.+|..|++|-|.+|+|+
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 66666666666666666665
|
|
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-13 Score=134.95 Aligned_cols=98 Identities=21% Similarity=0.326 Sum_probs=83.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.|++|+||.||+|+... +...||+| .+++|||||.+.++..... -
T Consensus 75 v~efe~lnrI~EGtyGiVYRakdk~--t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~---~ 149 (419)
T KOG0663|consen 75 VEEFEKLNRIEEGTYGVVYRAKDKK--TDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSN---M 149 (419)
T ss_pred HHHHHHHhhcccCcceeEEEeccCC--cceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccc---c
Confidence 3568889999999999999999544 44599999 4678999999999877632 4
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+|||||||+. ||...+...+ .++...++.-++.|+++|++|||
T Consensus 150 d~iy~VMe~~Eh-DLksl~d~m~---q~F~~~evK~L~~QlL~glk~lH 194 (419)
T KOG0663|consen 150 DKIYIVMEYVEH-DLKSLMETMK---QPFLPGEVKTLMLQLLRGLKHLH 194 (419)
T ss_pred ceeeeeHHHHHh-hHHHHHHhcc---CCCchHHHHHHHHHHHHHHHHHh
Confidence 569999999986 8999998653 56889999999999999999999
|
|
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-13 Score=137.22 Aligned_cols=96 Identities=30% Similarity=0.425 Sum_probs=79.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
....+.+.||+|.||+||+|.|++. .|||| ..++|+||..+++.=... ...--.+|
T Consensus 211 rqI~L~e~IGkGRyGEVwrG~wrGe----~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~-~gs~TQLw 285 (513)
T KOG2052|consen 211 RQIVLQEIIGKGRFGEVWRGRWRGE----DVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKD-NGSWTQLW 285 (513)
T ss_pred heeEEEEEecCccccceeeccccCC----ceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccC-CCceEEEE
Confidence 4577889999999999999999865 79999 468999999998862210 00112489
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||.||-|.|||+|||.+ ..++-...+++|.-+|.||++||
T Consensus 286 LvTdYHe~GSL~DyL~r-----~tv~~~~ml~LalS~AsGLaHLH 325 (513)
T KOG2052|consen 286 LVTDYHEHGSLYDYLNR-----NTVTTEGMLKLALSIASGLAHLH 325 (513)
T ss_pred EeeecccCCcHHHHHhh-----ccCCHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999975 34888999999999999999999
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-13 Score=143.62 Aligned_cols=97 Identities=27% Similarity=0.450 Sum_probs=84.0
Q ss_pred HHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
+.+.+.....+-+|.|+-|.||.|++... .|||| ++++||||+++.|+|.. ...++||
T Consensus 120 eiPFe~IsELeWlGSGaQGAVF~Grl~ne----tVAVKKV~elkETdIKHLRkLkH~NII~FkGVCtq-----sPcyCIi 190 (904)
T KOG4721|consen 120 EIPFEEISELEWLGSGAQGAVFLGRLHNE----TVAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQ-----SPCYCII 190 (904)
T ss_pred cCCHHHhhhhhhhccCcccceeeeeccCc----eehhHHHhhhhhhhHHHHHhccCcceeeEeeeecC-----CceeEEe
Confidence 33334445678899999999999998765 79999 78999999999999987 6788999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+.|-|.+.|+.. ..+.....+.+..|||.||.|||
T Consensus 191 MEfCa~GqL~~VLka~----~~itp~llv~Wsk~IA~GM~YLH 229 (904)
T KOG4721|consen 191 MEFCAQGQLYEVLKAG----RPITPSLLVDWSKGIAGGMNYLH 229 (904)
T ss_pred eeccccccHHHHHhcc----CccCHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999854 45788888999999999999998
|
|
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-13 Score=150.67 Aligned_cols=95 Identities=28% Similarity=0.517 Sum_probs=80.7
Q ss_pred ccccceeccCCceeEEEEEECCCC--ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDD--HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~--~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
....++||+|+||+||||.+-..+ ....||+| .+++|||+++++|+|.. ..
T Consensus 698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~------s~ 771 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCML------ST 771 (1177)
T ss_pred hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhccc------ch
Confidence 445689999999999999974332 23468888 58999999999999985 44
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.||++|||.|+|.++++.++ ..+.-+..+.|+.|||+||.|||
T Consensus 772 ~qlvtq~mP~G~LlDyvr~hr---~~igsq~lLnw~~QIAkgM~YLe 815 (1177)
T KOG1025|consen 772 LQLVTQLMPLGCLLDYVREHR---DNIGSQDLLNWCYQIAKGMKYLE 815 (1177)
T ss_pred HHHHHHhcccchHHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999765 45888899999999999999997
|
|
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-13 Score=144.98 Aligned_cols=94 Identities=36% Similarity=0.504 Sum_probs=82.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|...+.||+|+||+||||+.+. +.+.||+| ++++|||||.+++.+. ...
T Consensus 2 e~yhv~e~iG~Gsfg~VYKgrrK~--t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfE-----t~~ 74 (808)
T KOG0597|consen 2 EQYHVYEMIGEGSFGRVYKGRRKY--TIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFE-----TSA 74 (808)
T ss_pred cchhHHHHhcCCccceeeeccccc--ceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhc-----ccc
Confidence 467788999999999999999554 45599999 5789999999999854 488
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+|+|.|||.| +|+++|... ..++++++..|+.|+..||.|||
T Consensus 75 ~~~vVte~a~g-~L~~il~~d----~~lpEe~v~~~a~~LVsaL~yLh 117 (808)
T KOG0597|consen 75 HLWVVTEYAVG-DLFTILEQD----GKLPEEQVRAIAYDLVSALYYLH 117 (808)
T ss_pred eEEEEehhhhh-hHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999987 999999844 56999999999999999999998
|
|
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-13 Score=138.36 Aligned_cols=94 Identities=21% Similarity=0.417 Sum_probs=83.3
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.|++.+.+|+|.||+|-+|+-. ..++.|||| +.++||||+++|++ |+..+
T Consensus 54 RyE~~etLGkGTYGKVk~A~e~--~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEV-----FENkd 126 (668)
T KOG0611|consen 54 RYEITETLGKGTYGKVKLAYEH--KSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEV-----FENKD 126 (668)
T ss_pred HHHHHHHhcCCcccceeehhhc--cCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhh-----hcCCc
Confidence 4777889999999999999843 345699999 57899999999999 45588
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+.|||||..+|+|++|+..+ ..+++.++..+++||..|+.|+|
T Consensus 127 KIvivMEYaS~GeLYDYiSer----~~LsErEaRhfFRQIvSAVhYCH 170 (668)
T KOG0611|consen 127 KIVIVMEYASGGELYDYISER----GSLSEREARHFFRQIVSAVHYCH 170 (668)
T ss_pred eEEEEEEecCCccHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999865 45999999999999999999998
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-13 Score=136.16 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=85.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.+|+|.-|+||.++..+... .+|+| +.++||.+.+||+.+.. +
T Consensus 77 ~~f~llk~LG~GdiG~VyL~~l~~t~~--~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet-----~ 149 (459)
T KOG0610|consen 77 RHFRLLKRLGCGDIGTVYLVELRGTNC--LFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFET-----D 149 (459)
T ss_pred HHHHHHHHcCCCCceeEEEEEecCCCc--eEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeec-----c
Confidence 457788999999999999999876544 89999 46899999999999544 8
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.++|||||+||+|+.+.+++. .+.+++..++.||.+|.-||+|||
T Consensus 150 ~~~cl~meyCpGGdL~~LrqkQp--~~~fse~~aRFYaAEvl~ALEYLH 196 (459)
T KOG0610|consen 150 KYSCLVMEYCPGGDLHSLRQKQP--GKRFSESAARFYAAEVLLALEYLH 196 (459)
T ss_pred ceeEEEEecCCCccHHHHHhhCC--CCccchhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999988653 567999999999999999999999
|
|
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-13 Score=128.28 Aligned_cols=95 Identities=26% Similarity=0.387 Sum_probs=82.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+.|...+++|+|.||.||+|+... +++.|||| +.++|+||+.+++++. ..+
T Consensus 2 ~rY~~~~~lGEG~~gvVyka~d~~--t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~-----~~~ 74 (318)
T KOG0659|consen 2 DRYEKLEKLGEGTYGVVYKARDTE--TGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFP-----HKS 74 (318)
T ss_pred chhhhhhhhcCcceEEEEEEEecC--CCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhcc-----CCC
Confidence 357778999999999999999554 45599999 5789999999999954 478
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+.||+|||+. ||+..|+.+ ...++..++..++.++.+|++|+|
T Consensus 75 ~l~lVfEfm~t-dLe~vIkd~---~i~l~pa~iK~y~~m~LkGl~y~H 118 (318)
T KOG0659|consen 75 NLSLVFEFMPT-DLEVVIKDK---NIILSPADIKSYMLMTLKGLAYCH 118 (318)
T ss_pred ceEEEEEeccc-cHHHHhccc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence 89999999975 999999865 366899999999999999999999
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-13 Score=138.52 Aligned_cols=95 Identities=44% Similarity=0.680 Sum_probs=79.7
Q ss_pred ccceeccCCceeEEEEEEC--CCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 708 LENLIGAGSFGSVYKGILN--HDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 708 ~~~~ig~G~~g~Vy~~~~~--~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
..+.||.|.||.||+|++. .......|+|| ++++||||++++|+|.. .+..+
T Consensus 3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~-----~~~~~ 77 (259)
T PF07714_consen 3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIE-----NEPLF 77 (259)
T ss_dssp EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEES-----SSSEE
T ss_pred EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccc-----ccccc
Confidence 4578999999999999998 34455689999 46799999999999985 56699
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||||++|+|.++++.. ....+++.++..|+.|||+||+|||
T Consensus 78 lv~e~~~~g~L~~~L~~~--~~~~~~~~~~~~i~~~i~~~l~~Lh 120 (259)
T PF07714_consen 78 LVMEYCPGGSLDDYLKSK--NKEPLSEQQRLSIAIQIAEALSYLH 120 (259)
T ss_dssp EEEE--TTEBHHHHHHHT--CTTTSBHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 999999999999999865 2356899999999999999999998
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-13 Score=137.12 Aligned_cols=98 Identities=26% Similarity=0.465 Sum_probs=83.6
Q ss_pred ccccccceeccCCceeEEEEEECC-CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~-~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.+|+..+.||+|+||.||+|.+.. ...+..||+| +.++||||+++++++.. ++
T Consensus 5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~ 79 (266)
T cd05064 5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITR-----GN 79 (266)
T ss_pred HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEec-----CC
Confidence 468888999999999999998643 2234589998 46789999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.+++.... ..++|.++..++.|++.||+|||
T Consensus 80 ~~~lv~e~~~~~~L~~~l~~~~---~~l~~~~~~~~~~~i~~al~~lH 124 (266)
T cd05064 80 TMMIVTEYMSNGALDSFLRKHE---GQLVAGQLMGMLPGLASGMKYLS 124 (266)
T ss_pred CcEEEEEeCCCCcHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999997542 35899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-13 Score=139.98 Aligned_cols=99 Identities=24% Similarity=0.375 Sum_probs=86.8
Q ss_pred HHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCC-CCcceeeEeeeeecc
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSI-RHRNLVKIITSCASV 755 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l-~H~niv~l~~~~~~~ 755 (809)
.+...+|.++++||+|+|++||+|+..+ ++++|||| ..+ .||.||+|+..
T Consensus 69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~--t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~T---- 142 (604)
T KOG0592|consen 69 KKTPNDFKFGKILGEGSYSTVVLAREKA--TGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFT---- 142 (604)
T ss_pred cCChhhcchhheeccccceeEEEeeecC--CCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEE----
Confidence 3445689999999999999999999555 55599999 234 89999999987
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+|+..+|.|+||+++|+|.++|++. +.+++..++.+|.||..|++|||
T Consensus 143 -FQD~~sLYFvLe~A~nGdll~~i~K~----Gsfde~caR~YAAeIldAleylH 191 (604)
T KOG0592|consen 143 -FQDEESLYFVLEYAPNGDLLDLIKKY----GSFDETCARFYAAEILDALEYLH 191 (604)
T ss_pred -eecccceEEEEEecCCCcHHHHHHHh----CcchHHHHHHHHHHHHHHHHHHH
Confidence 56688999999999999999999865 46999999999999999999999
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-12 Score=136.98 Aligned_cols=98 Identities=23% Similarity=0.338 Sum_probs=85.7
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeecccc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
...++|+.+.+||+|+||.||.|+-++ ++..+|+| ...++|+||+||.. |
T Consensus 138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~--Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYs-----F 210 (550)
T KOG0605|consen 138 LSLDDFELLKVIGKGAFGEVRLARKKD--TGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYS-----F 210 (550)
T ss_pred CCcccchhheeeccccceeEEEEEEcc--CCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEE-----e
Confidence 346889999999999999999999655 45599999 34678999999988 6
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.+++||||||.||||+..+|.+. ..+++..+..|+.+.+-|++-||
T Consensus 211 QD~~~LYLiMEylPGGD~mTLL~~~----~~L~e~~arfYiaE~vlAI~~iH 258 (550)
T KOG0605|consen 211 QDKEYLYLIMEYLPGGDMMTLLMRK----DTLTEDWARFYIAETVLAIESIH 258 (550)
T ss_pred cCCCeeEEEEEecCCccHHHHHHhc----CcCchHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999865 46899999999999999998887
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-13 Score=143.27 Aligned_cols=104 Identities=26% Similarity=0.420 Sum_probs=82.7
Q ss_pred hcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCC-CCcceeeEeeeeeccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSI-RHRNLVKIITSCASVD 756 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~ 756 (809)
+.++|...++||+|+||.||+|.... ...++.|||| +.+ +|||||+++++|..
T Consensus 5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~-- 82 (338)
T cd05102 5 PRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTK-- 82 (338)
T ss_pred chhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecC--
Confidence 45678899999999999999998521 2233479999 234 89999999998764
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCC---------------------------------------------------
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEA--------------------------------------------------- 785 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~--------------------------------------------------- 785 (809)
.....++|||||++|+|.++++..+..
T Consensus 83 --~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
T cd05102 83 --PNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPP 160 (338)
T ss_pred --CCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccc
Confidence 245689999999999999999753210
Q ss_pred -------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 786 -------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 786 -------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...+++.++..++.||++||+|||
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH 191 (338)
T cd05102 161 QETDDLWKSPLTMEDLICYSFQVARGMEFLA 191 (338)
T ss_pred hhccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 134788999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=142.48 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=83.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++||||+++++++.. +
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-----~ 73 (364)
T cd05599 1 DDFESIKVIGRGAFGEVRLVQKKDTGH--IYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQD-----E 73 (364)
T ss_pred CCceEEEEEEecCCEEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-----C
Confidence 468889999999999999999765444 89999 45789999999998765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.++++.. ..+++.++..|+.|++.||+|||
T Consensus 74 ~~~~lv~E~~~~g~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~lH 118 (364)
T cd05599 74 NYLYLIMEYLPGGDMMTLLMKK----DTFTEEETRFYIAETILAIDSIH 118 (364)
T ss_pred CeEEEEECCCCCcHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999753 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-13 Score=141.10 Aligned_cols=95 Identities=28% Similarity=0.511 Sum_probs=80.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
....+.++||+|.||+|..|+.... ..|||| .+++|||||+++|+|.. ++.
T Consensus 538 s~L~~~ekiGeGqFGEVhLCeveg~---lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~-----DeP 609 (807)
T KOG1094|consen 538 SRLRFKEKIGEGQFGEVHLCEVEGP---LKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQ-----DDP 609 (807)
T ss_pred hheehhhhhcCcccceeEEEEecCc---eEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeec-----CCc
Confidence 4456779999999999999997542 389999 57899999999999997 788
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yL 808 (809)
+.+|+|||++|+|.+++..+... ...-....+||.|||.||+||
T Consensus 610 icmI~EYmEnGDLnqFl~aheap--t~~t~~~vsi~tqiasgmaYL 653 (807)
T KOG1094|consen 610 LCMITEYMENGDLNQFLSAHELP--TAETAPGVSICTQIASGMAYL 653 (807)
T ss_pred hHHHHHHHhcCcHHHHHHhccCc--ccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999877422 134456778999999999998
|
|
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=143.52 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=61.9
Q ss_pred hcccccccceeccCCceeEEEEEEC---CCCceeEEEEe---------------------cCC-CCcceeeEeeeeeccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVK---------------------RSI-RHRNLVKIITSCASVD 756 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~---~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~ 756 (809)
..++|+..+.||+|+||+||+|+.. ....+..|||| +.+ +|||||+++++|..
T Consensus 33 ~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~-- 110 (375)
T cd05104 33 PRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTV-- 110 (375)
T ss_pred chHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeecc--
Confidence 3457888999999999999999742 22234579999 235 79999999999865
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPK 782 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~ 782 (809)
++..++|||||++|+|.++++.+
T Consensus 111 ---~~~~~lv~E~~~~g~L~~~l~~~ 133 (375)
T cd05104 111 ---GGPTLVITEYCCYGDLLNFLRRK 133 (375)
T ss_pred ---CCcceeeehhccCCcHHHHHHhc
Confidence 67899999999999999999753
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=141.15 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=83.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. +
T Consensus 1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-----~ 73 (377)
T cd05629 1 EDFHTVKVIGKGAFGEVRLVQKKDTGK--IYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQD-----A 73 (377)
T ss_pred CCceEeEEEeecCCEEEEEEEECCCCC--EEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEc-----C
Confidence 368889999999999999999765544 89999 35789999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.+++... ..+++..+..++.|++.||+|||
T Consensus 74 ~~~~lv~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~ql~~aL~~LH 118 (377)
T cd05629 74 QYLYLIMEFLPGGDLMTMLIKY----DTFSEDVTRFYMAECVLAIEAVH 118 (377)
T ss_pred CeeEEEEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999743 35889999999999999999999
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-14 Score=134.40 Aligned_cols=95 Identities=25% Similarity=0.398 Sum_probs=84.4
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
-|+...++|+|+||.||||.+++.+. .+||| +.++.|+||++||.|.. ...+|||
T Consensus 34 VFDi~~KLGEGSYGSV~KAIH~EsG~--v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK-----~sDLWIV 106 (502)
T KOG0574|consen 34 VFDIVGKLGEGSYGSVHKAIHRESGH--VLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFK-----HSDLWIV 106 (502)
T ss_pred HHHHHHHhcCCcchHHHHHHHhccCc--EEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhcc-----CCceEee
Confidence 37778999999999999999776655 99999 56789999999998654 6679999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||..|+..+.++.++ +.+.++++..+.+..++||+|||
T Consensus 107 MEYCGAGSiSDI~R~R~---K~L~E~EIs~iL~~TLKGL~YLH 146 (502)
T KOG0574|consen 107 MEYCGAGSISDIMRARR---KPLSEQEISAVLRDTLKGLQYLH 146 (502)
T ss_pred hhhcCCCcHHHHHHHhc---CCccHHHHHHHHHHHHhHHHHHH
Confidence 99999999999998664 67999999999999999999998
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=133.66 Aligned_cols=100 Identities=28% Similarity=0.385 Sum_probs=82.5
Q ss_pred HHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------------------cCCCCcce
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------------RSIRHRNL 745 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------------~~l~H~ni 745 (809)
.+..+.|++...||+|.||+|-+|+-.. .++.|||| ++++||||
T Consensus 93 ~k~lNqy~l~~eiG~G~yGkVkLar~~~--~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nV 170 (576)
T KOG0585|consen 93 RKQLNQYELIKEIGSGQYGKVKLARDEV--DGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNV 170 (576)
T ss_pred ceehhheehhhhhcCCccceEEEEeecC--CCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCe
Confidence 3445789999999999999999999443 44599999 68899999
Q ss_pred eeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCC-CCHHHHHHHHHHHHHHhhhcC
Q 040849 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN-SNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 746 v~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~-~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+|+++..++. .+.+|||+|||..|.+... + ..+. +++.++++|.+++..||+|||
T Consensus 171 V~LiEvLDDP~---s~~~YlVley~s~G~v~w~----p-~d~~els~~~Ar~ylrDvv~GLEYLH 227 (576)
T KOG0585|consen 171 VKLIEVLDDPE---SDKLYLVLEYCSKGEVKWC----P-PDKPELSEQQARKYLRDVVLGLEYLH 227 (576)
T ss_pred eEEEEeecCcc---cCceEEEEEeccCCccccC----C-CCcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999966532 5679999999999987532 1 2233 899999999999999999999
|
|
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-12 Score=140.21 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=83.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+ +.|||| ..++||||+++++++.. +
T Consensus 1 ~~y~~~~~LG~G~~g~V~~~~~~~~~--~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~-----~ 73 (363)
T cd05628 1 EDFESLKVIGRGAFGEVRLVQKKDTG--HVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQD-----K 73 (363)
T ss_pred CCceEeEEEEeCCCEEEEEEEECCCC--CEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEec-----C
Confidence 46888999999999999999965543 489999 46789999999998654 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...|+|||||++|+|.+++.++ ..+++.++..++.|++.||+|||
T Consensus 74 ~~~~lv~E~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~lH 118 (363)
T cd05628 74 LNLYLIMEFLPGGDMMTLLMKK----DTLTEEETQFYIAETVLAIDSIH 118 (363)
T ss_pred CeEEEEEcCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999753 35899999999999999999999
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-12 Score=141.08 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=82.5
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.|+..+.||+|+||+||+|+....+ +.|||| +.++|||||++++++.. ++
T Consensus 2 ~f~~~~~LG~G~~g~Vy~~~~~~~~--~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~-----~~ 74 (381)
T cd05626 2 MFVKIKTLGIGAFGEVCLACKVDTH--ALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQD-----KD 74 (381)
T ss_pred CceEEEEEeecCCEEEEEEEECCCC--CEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEec-----CC
Confidence 5788899999999999999976544 489999 46789999999999765 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||++|+|.+++.+. ..+++..+..++.|++.||+|||
T Consensus 75 ~~~lv~E~~~gg~L~~~l~~~----~~~~e~~~~~~~~qi~~aL~~LH 118 (381)
T cd05626 75 NLYFVMDYIPGGDMMSLLIRM----EVFPEVLARFYIAELTLAIESVH 118 (381)
T ss_pred EEEEEEecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999754 35889999999999999999999
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-13 Score=136.33 Aligned_cols=102 Identities=29% Similarity=0.454 Sum_probs=81.9
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
.|...+++|+|+||.||+|...+.+. .|||| ++++|||||++..++....-.+.-+..+|||
T Consensus 25 ~~~~~~liG~GsFg~Vyq~~~~e~~~--~vAIKKv~~d~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVle 102 (364)
T KOG0658|consen 25 SYEAVRLIGSGSFGVVYQAKLRETEE--EVAIKKVLQDKRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLE 102 (364)
T ss_pred EEEeeEEEeecccceEEEEEEcCCCc--eeEEEEecCCCCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHH
Confidence 46778999999999999999877644 89999 6789999999998876532222235678999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||. +|.+.++.....+..++.-.+.-++.|+.+||+|||
T Consensus 103 ymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh 142 (364)
T KOG0658|consen 103 YMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH 142 (364)
T ss_pred hchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH
Confidence 9987 899999853223355777788999999999999998
|
|
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=136.94 Aligned_cols=114 Identities=22% Similarity=0.306 Sum_probs=93.2
Q ss_pred ccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCC-CCcceeeEeeeee
Q 040849 694 VSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSI-RHRNLVKIITSCA 753 (809)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l-~H~niv~l~~~~~ 753 (809)
+.++++..+.++|+..+.||+|+||+||+|.....+. .||+| +.+ +||||+++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~--~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 85 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGS--KAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYY 85 (286)
T ss_pred EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCc--eeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeee
Confidence 4556777788999999999999999999999765444 88988 345 6999999999886
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++++..++||||+++|+|.++++........+++..+..++.|+++||+|||
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH 141 (286)
T cd06638 86 KKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLH 141 (286)
T ss_pred ecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHH
Confidence 53334466799999999999999988643223346889999999999999999998
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-12 Score=132.99 Aligned_cols=98 Identities=30% Similarity=0.404 Sum_probs=81.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++...+.||+|+||.||++...+. +...||| ++++|||||+++|..... + ...+
T Consensus 17 ~~~~~~~~lG~Gs~G~V~l~~~~~~--g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~--~-~~~~ 91 (313)
T KOG0198|consen 17 SNWSKGKLLGRGSFGSVYLATNKKT--GELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSR--E-NDEY 91 (313)
T ss_pred chhhhhccccCccceEEEEEEecCC--CcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccc--c-Ceee
Confidence 3567789999999999999997654 3389999 467899999999974431 1 1368
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|+|||+++|+|.+++.+.+ . .+++..+.++++||++||+|||
T Consensus 92 ~i~mEy~~~GsL~~~~~~~g--~-~l~E~~v~~ytr~iL~GL~ylH 134 (313)
T KOG0198|consen 92 NIFMEYAPGGSLSDLIKRYG--G-KLPEPLVRRYTRQILEGLAYLH 134 (313)
T ss_pred EeeeeccCCCcHHHHHHHcC--C-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998653 2 5999999999999999999999
|
|
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-12 Score=139.07 Aligned_cols=97 Identities=25% Similarity=0.377 Sum_probs=83.7
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+.||+|+||.||+|.....+ ...||+| +.++|||||++++++..
T Consensus 29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~----- 102 (340)
T PTZ00426 29 YEDFNFIRTLGTGSFGRVILATYKNED-FPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKD----- 102 (340)
T ss_pred hhhcEEEEEEeecCCeEEEEEEEECCC-CeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEe-----
Confidence 356888999999999999999865432 2479998 46789999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.++++.. ..+++..+..++.|++.||+|||
T Consensus 103 ~~~~~lv~Ey~~~g~L~~~i~~~----~~~~~~~~~~~~~qi~~aL~~LH 148 (340)
T PTZ00426 103 ESYLYLVLEFVIGGEFFTFLRRN----KRFPNDVGCFYAAQIVLIFEYLQ 148 (340)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 35899999999999999999998
|
|
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=137.34 Aligned_cols=95 Identities=23% Similarity=0.383 Sum_probs=82.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|.....+. .||+| +.++||||+++++++.. +
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~ 73 (291)
T cd05612 1 DDLERIKTVGTGTFGRVHLVRDRISEH--YYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHD-----Q 73 (291)
T ss_pred CCceeeeeeecCCCeEEEEEEEcCCCC--EEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhcc-----C
Confidence 368889999999999999999765434 89998 46789999999988554 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.++++.+ ..+++..+..++.|+++||+|||
T Consensus 74 ~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH 118 (291)
T cd05612 74 RFLYMLMEYVPGGELFSYLRNS----GRFSNSTGLFYASEIVCALEYLH 118 (291)
T ss_pred CeEEEEEeCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999754 35889999999999999999999
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-12 Score=139.20 Aligned_cols=99 Identities=31% Similarity=0.522 Sum_probs=85.2
Q ss_pred hcccccccceeccCCceeEEEEEECCC--CceeEEEEe---------------------cCCCCcceeeEeeeeeccccC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHD--DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~--~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++..+..+.||+|-||.||+|.+.+- +..-.|||| +.++|||||+++|+|.
T Consensus 387 ~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~----- 461 (974)
T KOG4257|consen 387 RRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCV----- 461 (974)
T ss_pred ehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeee-----
Confidence 344566778999999999999998653 344569999 6899999999999997
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...|||||.++-|.|..|++.++ ..++......++.||+.||+|||
T Consensus 462 -e~P~WivmEL~~~GELr~yLq~nk---~sL~l~tL~ly~~Qi~talaYLe 508 (974)
T KOG4257|consen 462 -EQPMWIVMELAPLGELREYLQQNK---DSLPLRTLTLYCYQICTALAYLE 508 (974)
T ss_pred -ccceeEEEecccchhHHHHHHhcc---ccchHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999998653 56888999999999999999997
|
|
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=134.31 Aligned_cols=91 Identities=26% Similarity=0.443 Sum_probs=76.0
Q ss_pred eeccCCceeEEEEEECCC----------------------CceeEEEEe--------------------cCCCCcceeeE
Q 040849 711 LIGAGSFGSVYKGILNHD----------------------DHETLVAVK--------------------RSIRHRNLVKI 748 (809)
Q Consensus 711 ~ig~G~~g~Vy~~~~~~~----------------------~~~~~vavK--------------------~~l~H~niv~l 748 (809)
.||+|+||.||+|.+... .....||+| +.++||||+++
T Consensus 2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~ 81 (274)
T cd05076 2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV 81 (274)
T ss_pred CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence 589999999999985321 122358888 46899999999
Q ss_pred eeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 749 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++|.. +...++||||+++|+|..++++.+ ..+++..+..++.||++||+|||
T Consensus 82 ~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~---~~~~~~~~~~i~~qi~~~l~~lH 134 (274)
T cd05076 82 HGVCVR-----GSENIMVEEFVEHGPLDVCLRKEK---GRVPVAWKITVAQQLASALSYLE 134 (274)
T ss_pred EEEEEe-----CCceEEEEecCCCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999876 677899999999999999987532 45889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-12 Score=135.39 Aligned_cols=101 Identities=25% Similarity=0.454 Sum_probs=82.5
Q ss_pred ccccccceeccCCceeEEEEEECCC--------------CceeEEEEe---------------------cCCCCcceeeE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD--------------DHETLVAVK---------------------RSIRHRNLVKI 748 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~--------------~~~~~vavK---------------------~~l~H~niv~l 748 (809)
++|...+.||+|+||.||+|...+. +.+..||+| ++++|||||++
T Consensus 5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~ 84 (304)
T cd05096 5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL 84 (304)
T ss_pred hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence 4688889999999999999986432 133479999 46899999999
Q ss_pred eeeeeccccCCCceEEEEEeccCCCChhhhhcCCCC---------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPE---------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 749 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++++.. .+..++||||+++|+|.+++..... ....++|.++.+++.|++.||+|||
T Consensus 85 ~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH 155 (304)
T cd05096 85 LGVCVD-----EDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS 155 (304)
T ss_pred EEEEec-----CCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999765 6679999999999999999864321 1134788999999999999999998
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-12 Score=137.65 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=83.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. +
T Consensus 18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~ 90 (329)
T PTZ00263 18 SDFEMGETLGTGSFGRVRIAKHKGTGE--YYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQD-----E 90 (329)
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCC--EEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEc-----C
Confidence 568889999999999999999765544 89999 46789999999998765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.++++.. ..+++..+..++.|++.||+|||
T Consensus 91 ~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 135 (329)
T PTZ00263 91 NRVYFLLEFVVGGELFTHLRKA----GRFPNDVAKFYHAELVLAFEYLH 135 (329)
T ss_pred CEEEEEEcCCCCChHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999753 35789999999999999999998
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-14 Score=148.96 Aligned_cols=176 Identities=30% Similarity=0.438 Sum_probs=111.9
Q ss_pred cEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccc
Q 040849 373 RILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452 (809)
Q Consensus 373 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 452 (809)
...|++.|++. .+|..++.+..|+.+.|..|.+. .+|..++.+..|++|||+.|+++ ..|..++.++ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34566666665 45666666666666666666665 56666666666666666666666 4555555554 666666666
Q ss_pred cCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccC
Q 040849 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532 (809)
Q Consensus 453 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 532 (809)
+++ .+|..++...+|..||.+.|++. .+|..+.++.++ ..|+++.|++. .+|..+..| .|..||+|.|+++ .+|
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence 665 55666666666666777777666 566666666666 46666666666 344444433 3666777777776 667
Q ss_pred ccccCCCCCCEEeCcCCccccccchhh
Q 040849 533 NSLGSCVRLEQLGMNGNFFQGNIPSSF 559 (809)
Q Consensus 533 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 559 (809)
-+|..|+.|++|-|.+|.++ ..|..+
T Consensus 228 v~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred hhhhhhhhheeeeeccCCCC-CChHHH
Confidence 77777777777777777776 444444
|
|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-12 Score=136.89 Aligned_cols=97 Identities=25% Similarity=0.374 Sum_probs=83.7
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCC-CcceeeEeeeeecc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIR-HRNLVKIITSCASV 755 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~-H~niv~l~~~~~~~ 755 (809)
..+.|...+.||+|+||+||.|.....+ ..|||| +.++ ||||+++++++..
T Consensus 15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~--~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t- 91 (370)
T KOG0583|consen 15 SIGKYELGRTLGSGSFGKVKLAKHRLTG--EKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFAT- 91 (370)
T ss_pred ccCceeeeeeecCCCCeeEEEeeeccCC--CeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEec-
Confidence 4567999999999999999999865543 488988 2344 9999999999765
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....|+|||||.+|+|++++..+ +++.+.++.++++|++.|++|+|
T Consensus 92 ----~~~~~ivmEy~~gGdL~~~i~~~----g~l~E~~ar~~F~Qlisav~y~H 137 (370)
T KOG0583|consen 92 ----PTKIYIVMEYCSGGDLFDYIVNK----GRLKEDEARKYFRQLISAVAYCH 137 (370)
T ss_pred ----CCeEEEEEEecCCccHHHHHHHc----CCCChHHHHHHHHHHHHHHHHHH
Confidence 66699999999999999999863 45889999999999999999999
|
|
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-12 Score=141.69 Aligned_cols=76 Identities=29% Similarity=0.515 Sum_probs=61.9
Q ss_pred HhcccccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCCC-CcceeeEeeeeecc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSIR-HRNLVKIITSCASV 755 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l~-H~niv~l~~~~~~~ 755 (809)
...+.|.+.+.||+|+||+||+|+.... .....|||| +.+. |||||+++++|..
T Consensus 34 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~- 112 (400)
T cd05105 34 FPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTK- 112 (400)
T ss_pred ccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEcc-
Confidence 3456788999999999999999986422 122369999 3454 9999999999865
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHP 781 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~ 781 (809)
.+..|||||||++|+|.++++.
T Consensus 113 ----~~~~~lv~Ey~~~g~L~~~l~~ 134 (400)
T cd05105 113 ----SGPIYIITEYCFYGDLVNYLHK 134 (400)
T ss_pred ----CCceEEEEEecCCCcHHHHHHH
Confidence 6789999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-12 Score=136.87 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=83.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+++....+. .||+| ..++|+||+++++++.. +
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~ 73 (331)
T cd05597 1 DDFEILKVIGRGAFGEVAVVKMKNTGQ--VYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQD-----E 73 (331)
T ss_pred CCceEEEEEEecCCeEEEEEEECCCCC--EEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEec-----C
Confidence 468889999999999999999765444 89999 24689999999998765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++.+. ...+++.++..++.||+.||+|||
T Consensus 74 ~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH 119 (331)
T cd05597 74 NNLYLVMDYYVGGDLLTLLSKF---EDRLPEDMARFYLAEMVLAIDSVH 119 (331)
T ss_pred CeEEEEEecCCCCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999753 245889999999999999999998
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-12 Score=139.53 Aligned_cols=97 Identities=20% Similarity=0.293 Sum_probs=84.1
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeecccc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
...++|+..+.||+|+||.||+++....+. .||+| +.++||||+++++++..
T Consensus 40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~--- 114 (370)
T cd05621 40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQK--VYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQD--- 114 (370)
T ss_pred CCHHHCeEEEEEEecCCeEEEEEEECCCCC--EEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc---
Confidence 345679999999999999999999765544 89998 45789999999998654
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++... .+++.++..++.||+.||+|||
T Consensus 115 --~~~~~lv~Ey~~gg~L~~~l~~~-----~~~~~~~~~~~~qil~aL~~LH 159 (370)
T cd05621 115 --DKYLYMVMEYMPGGDLVNLMSNY-----DVPEKWAKFYTAEVVLALDAIH 159 (370)
T ss_pred --CCEEEEEEcCCCCCcHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999643 3788999999999999999998
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-12 Score=136.91 Aligned_cols=95 Identities=20% Similarity=0.350 Sum_probs=83.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++.. +
T Consensus 1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-----~ 73 (333)
T cd05600 1 KDFQILTQVGQGGYGQVFLAKKKDTGE--IVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQD-----D 73 (333)
T ss_pred CCcEEEEEEeecCCeEEEEEEECCCCC--EEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEc-----C
Confidence 368889999999999999999765444 89999 35689999999998765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.++++.. ..+++.++..++.|++.||+|||
T Consensus 74 ~~~~lv~e~~~g~~L~~~l~~~----~~l~~~~~~~~~~qi~~~l~~lH 118 (333)
T cd05600 74 EYLYLAMEYVPGGDFRTLLNNL----GVLSEDHARFYMAEMFEAVDALH 118 (333)
T ss_pred CEEEEEEeCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999743 35889999999999999999998
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-12 Score=136.49 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=83.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|...+.||+|+||+||+++....+. .||+| ..++|++|+++++++.. +
T Consensus 1 d~y~i~~~lG~G~fg~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~-----~ 73 (331)
T cd05624 1 DDFEIIKVIGRGAFGEVAVVKMKHTER--IYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQD-----E 73 (331)
T ss_pred CCceEEEEEeeCCCeEEEEEEECCCCC--EEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----C
Confidence 468889999999999999999765444 89999 35689999999998765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++++.. ..+++..+..++.|++.||+|||
T Consensus 74 ~~~~lv~Ey~~gg~L~~~l~~~~---~~l~~~~~~~~~~qi~~~L~~lH 119 (331)
T cd05624 74 NYLYLVMDYYVGGDLLTLLSKFE---DRLPEDMARFYIAEMVLAIHSIH 119 (331)
T ss_pred CEEEEEEeCCCCCcHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999997532 45889999999999999999998
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.2e-13 Score=128.44 Aligned_cols=95 Identities=23% Similarity=0.345 Sum_probs=79.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+.|+...++|+|+||+||||+.++ +++.|||| +.++|+|+|.++++|.. ..
T Consensus 2 ekYE~LgkvGEGSYGvV~KCrnk~--TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrr-----kr 74 (396)
T KOG0593|consen 2 EKYEKLGKVGEGSYGVVMKCRNKD--TGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRR-----KR 74 (396)
T ss_pred cHHhhhhccccCcceEEEEeccCC--cccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHh-----cc
Confidence 457788899999999999999554 55699999 57899999999999765 78
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+++|+|||+..=|+++=+ . +..++...+..|+.|+++|+.|+|
T Consensus 75 klhLVFE~~dhTvL~eLe~-~---p~G~~~~~vk~~l~Q~l~ai~~cH 118 (396)
T KOG0593|consen 75 KLHLVFEYCDHTVLHELER-Y---PNGVPSELVKKYLYQLLKAIHFCH 118 (396)
T ss_pred eeEEEeeecchHHHHHHHh-c---cCCCCHHHHHHHHHHHHHHhhhhh
Confidence 8999999998855554433 2 344788999999999999999998
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=131.23 Aligned_cols=99 Identities=29% Similarity=0.390 Sum_probs=87.2
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
..++|+..++||.|.-++||+|.....+. .|||| +.++|||||+++..+.. +
T Consensus 24 n~~~YeL~e~IG~G~sa~V~~A~c~p~~e--~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv-----~ 96 (516)
T KOG0582|consen 24 NAKDYELQEVIGVGASAVVYLARCIPTNE--VVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVV-----D 96 (516)
T ss_pred CccceeEEEEEeccceeEeeeeeecccCC--EEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEe-----c
Confidence 34679999999999999999999876655 89999 56899999999988776 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+|+||.||.+|++.++++..- +..+++..+..|.+++++||.|||
T Consensus 97 ~~LWvVmpfMa~GS~ldIik~~~--~~Gl~E~~Ia~iLre~LkaL~YLH 143 (516)
T KOG0582|consen 97 SELWVVMPFMAGGSLLDIIKTYY--PDGLEEASIATILREVLKALDYLH 143 (516)
T ss_pred ceeEEeehhhcCCcHHHHHHHHc--cccccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998642 334899999999999999999999
|
|
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-12 Score=138.90 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=82.5
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+|+..+.||+|+||+||+|+....+ +.|||| +.++||||+++++++.. ++
T Consensus 2 ~y~~~~~lG~G~~g~V~~a~~~~~~--~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-----~~ 74 (376)
T cd05598 2 MFVKIKTIGIGAFGEVCLVRKVDTN--ALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQD-----KD 74 (376)
T ss_pred CceEEEEEEeCCCeEEEEEEECCCC--CEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEc-----CC
Confidence 6888999999999999999966543 489999 35789999999998665 78
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||++|+|.+++.+. ..+++..+..++.||+.||+|||
T Consensus 75 ~~~lv~E~~~~g~L~~~i~~~----~~~~~~~~~~~~~qi~~al~~lH 118 (376)
T cd05598 75 NLYFVMDYIPGGDMMSLLIRL----GIFEEDLARFYIAELTCAIESVH 118 (376)
T ss_pred EEEEEEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999754 35788999999999999999998
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-12 Score=138.77 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=82.2
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.|+..+.||+|+||+||+|+....+. .||+| +.++|||||++++++.. ++
T Consensus 2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~--~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~-----~~ 74 (382)
T cd05625 2 MFVKIKTLGIGAFGEVCLARKVDTKA--LYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQD-----KD 74 (382)
T ss_pred CcEEEEEEEeCCCEEEEEEEECCCCC--EEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEe-----CC
Confidence 47888999999999999999665444 89999 46789999999999765 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||++|+|.+++.+. ..+++..+..++.||+.||+|||
T Consensus 75 ~~~lv~E~~~gg~L~~~l~~~----~~~~e~~~~~~~~qi~~al~~lH 118 (382)
T cd05625 75 NLYFVMDYIPGGDMMSLLIRM----GIFPEDLARFYIAELTCAVESVH 118 (382)
T ss_pred EEEEEEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999753 34789999999999999999998
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-12 Score=139.57 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=83.3
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
..++|+..+.||+|+||+||+|+....+. .||+| +.++||||+++++++..
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~---- 114 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQ--VYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQD---- 114 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCC--EEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEec----
Confidence 45679999999999999999999765444 89999 36789999999998654
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.++++.. .+++..+..++.|+++||+|||
T Consensus 115 -~~~~~lv~Ey~~gg~L~~~l~~~-----~l~~~~~~~~~~qi~~aL~~LH 159 (370)
T cd05596 115 -DKYLYMVMEYMPGGDLVNLMSNY-----DIPEKWARFYTAEVVLALDAIH 159 (370)
T ss_pred -CCEEEEEEcCCCCCcHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999998643 3788889999999999999998
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-12 Score=134.62 Aligned_cols=92 Identities=28% Similarity=0.407 Sum_probs=79.8
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeeccccCC
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
|+..+.||+|+||.||+|.....+. .|||| +.++||||+++++++..
T Consensus 1 y~i~~~lg~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~----- 73 (324)
T cd05589 1 FRCLAVLGRGHFGKVLLAEYKKTGE--LYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQT----- 73 (324)
T ss_pred CeEEEEEeecCCEEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEc-----
Confidence 5667899999999999999765444 89999 24579999999998765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+||||+++|+|..+++. ..+++.++..++.|++.||+|||
T Consensus 74 ~~~~~lv~E~~~~~~L~~~~~~-----~~l~~~~~~~~~~qi~~al~~lH 118 (324)
T cd05589 74 EDHVCFVMEYAAGGDLMMHIHT-----DVFSEPRAVFYAACVVLGLQYLH 118 (324)
T ss_pred CCEEEEEEcCCCCCcHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999988863 34899999999999999999998
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-12 Score=131.73 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=81.5
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|+..+.||+|+||+||+|.....+. .|||| +.++|++|+++++++.. ++.
T Consensus 2 f~~~~~lg~G~~g~V~~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~-----~~~ 74 (285)
T cd05631 2 FRHYRVLGKGGFGEVCACQVRATGK--MYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYET-----KDA 74 (285)
T ss_pred ceEEEEEecCCCEEEEEEEEecCCc--eEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEcc-----CCe
Confidence 6778999999999999999765544 89999 45789999999998765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.+++.... ...+++.++..++.|++.||+|||
T Consensus 75 ~~lv~e~~~~g~L~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH 119 (285)
T cd05631 75 LCLVLTIMNGGDLKFHIYNMG--NPGFDEQRAIFYAAELCCGLEDLQ 119 (285)
T ss_pred EEEEEEecCCCcHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886432 235899999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-12 Score=138.65 Aligned_cols=79 Identities=25% Similarity=0.454 Sum_probs=63.5
Q ss_pred HHHhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCC-CcceeeEeeeee
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIR-HRNLVKIITSCA 753 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~-H~niv~l~~~~~ 753 (809)
+....++|...+.||+|+||.||+|++.+ ....+.|||| ..+. |||||+++++|.
T Consensus 32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~ 111 (401)
T cd05107 32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACT 111 (401)
T ss_pred ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEc
Confidence 33445568888999999999999999653 1233579999 3455 999999999986
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPK 782 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~ 782 (809)
. ++..++|||||++|+|.+++++.
T Consensus 112 ~-----~~~~~iv~E~~~~g~L~~~l~~~ 135 (401)
T cd05107 112 K-----GGPIYIITEYCRYGDLVDYLHRN 135 (401)
T ss_pred c-----CCCcEEEEeccCCCcHHHHHHhc
Confidence 5 66799999999999999999753
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-12 Score=137.64 Aligned_cols=96 Identities=29% Similarity=0.462 Sum_probs=82.3
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------c-----CCCCcceeeEeeeeecccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------R-----SIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~-----~l~H~niv~l~~~~~~~~~ 757 (809)
..++|...+++|+|+||+|+.++++..+. .+||| + .-+||.++.++.+ |
T Consensus 366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e--~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~-----f 438 (694)
T KOG0694|consen 366 TLDDFRLLAVLGRGSFGKVLLAELKGTNE--YYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSC-----F 438 (694)
T ss_pred cccceEEEEEeccCcCceEEEEEEcCCCc--EEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccc-----c
Confidence 34679999999999999999999877655 99999 0 1279999999998 4
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.+.+|.||||+.|||+..+.+. ..+++.++.-||+.|+.||+|||
T Consensus 439 QT~~~l~fvmey~~Ggdm~~~~~~-----~~F~e~rarfyaAev~l~L~fLH 485 (694)
T KOG0694|consen 439 QTKEHLFFVMEYVAGGDLMHHIHT-----DVFSEPRARFYAAEVVLGLQFLH 485 (694)
T ss_pred ccCCeEEEEEEecCCCcEEEEEec-----ccccHHHHHHHHHHHHHHHHHHH
Confidence 558999999999999996655542 45999999999999999999999
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-12 Score=137.32 Aligned_cols=95 Identities=27% Similarity=0.375 Sum_probs=83.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
...|+.-..||+|+.|.||.|.....+. .|||| +..+|+|||++++.+.. .+.
T Consensus 272 ~~~y~~~~kigqgaSG~vy~A~~~~~~~--~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv-----~de 344 (550)
T KOG0578|consen 272 RSKYTDFKKIGQGATGGVYVARKISTKQ--EVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLV-----GDE 344 (550)
T ss_pred hhhhcchhhhccccccceeeeeeccCCc--eEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcc-----cce
Confidence 3457777899999999999999655444 89999 56799999999998765 688
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|+|||||++|+|.+.+... .+++.++..|++++++||+|||
T Consensus 345 LWVVMEym~ggsLTDvVt~~-----~~~E~qIA~Icre~l~aL~fLH 386 (550)
T KOG0578|consen 345 LWVVMEYMEGGSLTDVVTKT-----RMTEGQIAAICREILQGLKFLH 386 (550)
T ss_pred eEEEEeecCCCchhhhhhcc-----cccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999743 4899999999999999999999
|
|
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-12 Score=135.92 Aligned_cols=95 Identities=24% Similarity=0.288 Sum_probs=83.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. .|||| ..++||+|+++++++.. +
T Consensus 1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~-----~ 73 (360)
T cd05627 1 DDFESLKVIGRGAFGEVRLVQKKDTGH--IYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQD-----K 73 (360)
T ss_pred CCceEEEEEeeCCCEEEEEEEECCCCC--EEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----C
Confidence 468889999999999999999765444 89999 35789999999998654 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.+++.++ ..+++..+..++.|++.||+|||
T Consensus 74 ~~~~lv~E~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~~L~~lH 118 (360)
T cd05627 74 RNLYLIMEFLPGGDMMTLLMKK----DTLSEEATQFYIAETVLAIDAIH 118 (360)
T ss_pred CEEEEEEeCCCCccHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999754 35889999999999999999998
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-12 Score=129.72 Aligned_cols=95 Identities=28% Similarity=0.451 Sum_probs=82.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
++|+..+.||+|+||.||++++.++ . .+|+| ++++||||+++++++.. ++..+
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~-~--~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 75 (256)
T cd05114 4 SELTFMKELGSGQFGVVHLGKWRAQ-I--KVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQ-----QKPLY 75 (256)
T ss_pred HHcEEeeEecCCcCceEEEEEeccC-c--eEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEcc-----CCCEE
Confidence 4578889999999999999987654 3 68888 57899999999999765 67799
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.++++... ..++|..+..++.|++.||+|||
T Consensus 76 iv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH 117 (256)
T cd05114 76 IVTEFMENGCLLNYLRQRQ---GKLSKDMLLSMCQDVCEGMEYLE 117 (256)
T ss_pred EEEEcCCCCcHHHHHHhCc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997542 35889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.7e-12 Score=134.13 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=83.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..++||+|+||+||+++....+. .||+| ..++|++|+++++++.. +
T Consensus 1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~ 73 (332)
T cd05623 1 EDFEILKVIGRGAFGEVAVVKLKNADK--VFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQD-----E 73 (332)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCC--EEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEec-----C
Confidence 468889999999999999999766544 89998 35789999999998765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++++.+ ..+++..+..++.|++.||+|||
T Consensus 74 ~~~~lv~ey~~~g~L~~~l~~~~---~~l~~~~~~~~~~qi~~al~~lH 119 (332)
T cd05623 74 NNLYLVMDYYVGGDLLTLLSKFE---DRLPEDMARFYLAEMVIAIDSVH 119 (332)
T ss_pred CEEEEEEeccCCCcHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999997532 35899999999999999999998
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-12 Score=134.18 Aligned_cols=96 Identities=23% Similarity=0.233 Sum_probs=84.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.++|+..+.||+|+||.||+++....+. .||+| ++++||||+++++++.. ++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 76 (331)
T cd06649 4 DDDFERISELGAGNGGVVTKVQHKPSGL--IMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DG 76 (331)
T ss_pred cccceEEEeecCCCCEEEEEEEECCCCc--EEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----CC
Confidence 3678999999999999999999765444 88888 57899999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.++++.. ..+++..+..++.|++.||+|||
T Consensus 77 ~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH 120 (331)
T cd06649 77 EISICMEHMDGGSLDQVLKEA----KRIPEEILGKVSIAVLRGLAYLR 120 (331)
T ss_pred EEEEEeecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999753 34889999999999999999998
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.1e-12 Score=131.29 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=81.6
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.|+..+.||+|+||+||++.....+ +.|||| +.++||||+++++++.. ++
T Consensus 1 ~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 73 (285)
T cd05605 1 TFRHYRVLGKGGFGEVCACQVRATG--KMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET-----KD 73 (285)
T ss_pred CceEEEEEecCCCeEEEEEEEcCCC--ceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecC-----CC
Confidence 3677899999999999999965443 489998 45789999999998765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||++|+|.+++.... ...+++.++..++.|+++||+|||
T Consensus 74 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH 119 (285)
T cd05605 74 ALCLVLTLMNGGDLKFHIYNMG--NPGFDEERAVFYAAEITCGLEDLH 119 (285)
T ss_pred eEEEEEeccCCCcHHHHHHhcC--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999886432 245899999999999999999998
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-12 Score=137.33 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=86.3
Q ss_pred HHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeee
Q 040849 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 697 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~ 753 (809)
.+.....++|+..+.||+|+||.||+|+....+. .||+| +.++||||+++++++.
T Consensus 36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~--~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~ 113 (371)
T cd05622 36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRK--VYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQ 113 (371)
T ss_pred hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCc--EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence 3444556789999999999999999999765544 89998 3568999999999875
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. ++..|+|||||++|+|.++++.. .+++..+..++.|++.||+|||
T Consensus 114 ~-----~~~~~lv~Ey~~gg~L~~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH 159 (371)
T cd05622 114 D-----DRYLYMVMEYMPGGDLVNLMSNY-----DVPEKWARFYTAEVVLALDAIH 159 (371)
T ss_pred c-----CCEEEEEEcCCCCCcHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 4 77899999999999999998643 3788899999999999999998
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-12 Score=133.87 Aligned_cols=89 Identities=27% Similarity=0.343 Sum_probs=77.3
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
+.||+|+||.||+++....+. .||+| +.++||||+++++++.. ++..|+|
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~-----~~~~~lv 73 (323)
T cd05595 1 KLLGKGTFGKVILVREKATGR--YYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-----HDRLCFV 73 (323)
T ss_pred CeeeeCCCEEEEEEEECCCCC--EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEec-----CCEEEEE
Confidence 468999999999999655444 89999 45789999999998765 6789999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||++|+|.+++.+. ..+++.++..++.|++.||+|||
T Consensus 74 ~E~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 112 (323)
T cd05595 74 MEYANGGELFFHLSRE----RVFTEERARFYGAEIVSALEYLH 112 (323)
T ss_pred EeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988743 35899999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.8e-12 Score=130.65 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=77.2
Q ss_pred eccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 712 IGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 712 ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
||+|+||+||+++....+. .|||| +.++||||+++.+++.. +...++|||
T Consensus 1 lg~G~~g~Vy~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-----~~~~~lv~e 73 (280)
T cd05608 1 LGKGGFGEVSACQMRATGK--LYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQT-----KTDLCLVMT 73 (280)
T ss_pred CCCCCceeEEEEEEccCCc--EEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcC-----CCeEEEEEe
Confidence 6999999999999665433 89999 46799999999988654 678999999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||++|+|.++++........+++.++..++.|++.||+|||
T Consensus 74 ~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH 114 (280)
T cd05608 74 IMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH 114 (280)
T ss_pred CCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999888654333456899999999999999999998
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.9e-12 Score=130.00 Aligned_cols=98 Identities=28% Similarity=0.467 Sum_probs=84.2
Q ss_pred ccccccceeccCCceeEEEEEECCC-CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+.... .....|||| +.++||||+++++++.. ++
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 78 (266)
T cd05033 4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTK-----SR 78 (266)
T ss_pred HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEec-----CC
Confidence 5688899999999999999997643 223478998 56789999999998754 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.+++.... ..+++.++.+++.|++.|++|||
T Consensus 79 ~~~iv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~Lh 123 (266)
T cd05033 79 PVMIITEYMENGSLDKFLREND---GKFTVGQLVGMLRGIASGMKYLS 123 (266)
T ss_pred ceEEEEEcCCCCCHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999997542 36899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-12 Score=141.60 Aligned_cols=179 Identities=35% Similarity=0.517 Sum_probs=93.3
Q ss_pred CCCCEEEeeCCeeecccCcCCcCCC-CccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEE
Q 040849 418 HKLQRLGLQGNKFLGEIPSSIGNLT-LLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYL 496 (809)
Q Consensus 418 ~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L 496 (809)
+.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|......+.+ ..|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L-~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL-NNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh-hhe
Confidence 44444444444444 2233333332 4555555555544 23334445555555555555554 333333344444 445
Q ss_pred EccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcc
Q 040849 497 DLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS 576 (809)
Q Consensus 497 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 576 (809)
++++|++. .+|.....+..|++|++++|.+. ..+..+..+..+..|.+++|++.. ++..++.++.++.|++++|.++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence 55555555 33333334444666666666433 445555666666666666666652 2555666666666666666666
Q ss_pred cccccccccCCCCCeEEccCCcccccCCC
Q 040849 577 GRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 577 ~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
...+ +..+..++.|++++|.+....|.
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccc--ccccCccCEEeccCccccccchh
Confidence 4333 66666666666666666655543
|
|
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-12 Score=132.50 Aligned_cols=114 Identities=27% Similarity=0.285 Sum_probs=92.2
Q ss_pred ccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCC-CCcceeeEeeeee
Q 040849 694 VSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSI-RHRNLVKIITSCA 753 (809)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l-~H~niv~l~~~~~ 753 (809)
++..++..++++|...+.||+|+||.||+|.....+. .+|+| +++ +||||+++++++.
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~--~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~ 89 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGS--LAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFY 89 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCC--EEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEE
Confidence 4445666678899999999999999999999765544 88888 234 8999999999987
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+.......|+||||+++|+|.++++........++|..+..++.|++.||+|||
T Consensus 90 ~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH 145 (291)
T cd06639 90 KADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLH 145 (291)
T ss_pred eccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 53222345689999999999999998743223456899999999999999999998
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.8e-12 Score=130.72 Aligned_cols=95 Identities=31% Similarity=0.400 Sum_probs=78.8
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
+.||+|+||.||+|+..++.....+|+| +.++||||+++++++.. ....++|||
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv~e 75 (269)
T cd05087 1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTE-----VTPYLLVME 75 (269)
T ss_pred CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-----CCCcEEEEE
Confidence 3689999999999987665555578888 46789999999998765 567899999
Q ss_pred ccCCCChhhhhcCCCC-CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPE-APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~-~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.++++..+. .....++..+..++.|+++|++|||
T Consensus 76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH 117 (269)
T cd05087 76 FCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH 117 (269)
T ss_pred CCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999975431 2235678888999999999999998
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-12 Score=135.79 Aligned_cols=98 Identities=24% Similarity=0.350 Sum_probs=85.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|...+++|+|+||.++..+.+.... .|++| ++++|||||.+++.+.. +
T Consensus 3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~--~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~-----~ 75 (426)
T KOG0589|consen 3 MDNYEVLRQVGRGAFGSALLVRHKSDDK--LYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEE-----D 75 (426)
T ss_pred cchhhhhhhcCccccchhhhhhhccCCc--eEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhc-----C
Confidence 3578889999999999999888665544 89999 57999999999998654 4
Q ss_pred ce-EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DF-KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~-~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+. ++||||||+||++.+.|.+.+ +..++++++.+++.|++.|+.|||
T Consensus 76 ~~~l~Ivm~Y~eGg~l~~~i~~~k--~~~f~E~~i~~~~~Q~~~av~ylH 123 (426)
T KOG0589|consen 76 GQLLCIVMEYCEGGDLAQLIKEQK--GVLFPEERILKWFVQILLAVNYLH 123 (426)
T ss_pred CceEEEEEeecCCCCHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHH
Confidence 55 999999999999999998654 467999999999999999999999
|
|
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-12 Score=134.25 Aligned_cols=96 Identities=23% Similarity=0.252 Sum_probs=83.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.++|+..+.||+|+||.||+|+....+. .+|+| +.++|||||+++++|.. ++
T Consensus 4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~--~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 76 (333)
T cd06650 4 DDDFEKISELGAGNGGVVFKVSHKPSGL--IMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DG 76 (333)
T ss_pred hhhhheeccccCCCCEEEEEEEECCCCc--EEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEE-----CC
Confidence 3678999999999999999999765444 78888 46889999999999876 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.++++.. ..+++..+..++.|++.||+|||
T Consensus 77 ~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~l~~~l~~lH 120 (333)
T cd06650 77 EISICMEHMDGGSLDQVLKKA----GRIPEQILGKVSIAVIKGLTYLR 120 (333)
T ss_pred EEEEEEecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999753 34789999999999999999998
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-12 Score=133.33 Aligned_cols=89 Identities=28% Similarity=0.334 Sum_probs=77.7
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
+.||+|+||+||+|+....+. .|||| +.++||||+++++++.. ++..|+|
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-----~~~~~lv 73 (323)
T cd05571 1 KLLGKGTFGKVILVREKATGK--YYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQT-----HDRLCFV 73 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCC--EEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEc-----CCEEEEE
Confidence 468999999999999765544 89999 46789999999998765 7789999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||+++|+|.+++... ..+++.++..++.||+.||+|||
T Consensus 74 ~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~L~~lH 112 (323)
T cd05571 74 MEYANGGELFFHLSRE----RVFSEDRARFYGAEIVSALGYLH 112 (323)
T ss_pred EeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998743 45899999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.9e-12 Score=132.22 Aligned_cols=95 Identities=24% Similarity=0.240 Sum_probs=82.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||+|+||.||++.....+ ..||+| +.++||||+++++++.. ++.
T Consensus 1 ~~~~~~~~lg~G~~g~v~~~~~~~~~--~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 73 (308)
T cd06615 1 DDFEKLGELGAGNGGVVTKVLHRPSG--LIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYS-----DGE 73 (308)
T ss_pred CCceEEeeccCCCCeEEEEEEEcCCC--eEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-----CCE
Confidence 36888999999999999999965543 478888 46799999999999765 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++++. ..+++..+..++.|+++||+|||
T Consensus 74 ~~lv~ey~~~~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH 116 (308)
T cd06615 74 ISICMEHMDGGSLDQVLKKA----GRIPENILGKISIAVLRGLTYLR 116 (308)
T ss_pred EEEEeeccCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 45889999999999999999998
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-12 Score=138.99 Aligned_cols=104 Identities=27% Similarity=0.462 Sum_probs=83.6
Q ss_pred HhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCC-CCcceeeEeeeeecc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSI-RHRNLVKIITSCASV 755 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~ 755 (809)
-..++|+..+.||+|+||.||+|+... ......|||| +.+ +|||||+++++|..
T Consensus 35 ~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~- 113 (374)
T cd05106 35 FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTH- 113 (374)
T ss_pred ccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecC-
Confidence 344578899999999999999998532 1123479999 345 89999999999765
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCC---------------------------------------------------
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPE--------------------------------------------------- 784 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------------------------------------------------- 784 (809)
.+..++|||||++|+|.++++.+..
T Consensus 114 ----~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (374)
T cd05106 114 ----GGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSS 189 (374)
T ss_pred ----CCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccc
Confidence 6789999999999999999864310
Q ss_pred ---------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 785 ---------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 785 ---------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....+++.++.+|+.||++||+|||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH 229 (374)
T cd05106 190 SSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLA 229 (374)
T ss_pred cccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 1134788999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.9e-12 Score=134.03 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=83.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|...+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. +
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~-----~ 73 (330)
T cd05601 1 KDFDVKSLVGRGHFGEVQVVREKATGD--IYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQD-----K 73 (330)
T ss_pred CCceEEEEEEeccCEEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEec-----C
Confidence 368889999999999999999765544 89999 35689999999998654 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++++.. ..+++..+..++.|+++||+|||
T Consensus 74 ~~~~lv~e~~~~~~L~~~l~~~~---~~l~~~~~~~~~~qi~~aL~~lH 119 (330)
T cd05601 74 DNLYLVMEYQPGGDLLSLLNRYE---DQFDEDMAQFYLAELVLAIHSVH 119 (330)
T ss_pred CeEEEEECCCCCCCHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999997542 45899999999999999999998
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=132.29 Aligned_cols=89 Identities=22% Similarity=0.406 Sum_probs=77.0
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||+||+|+....+. .|||| ...+||||+++++++.. ++..|+
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~-----~~~~~l 73 (316)
T cd05619 1 KMLGKGSFGKVFLAELKGTNQ--FFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQT-----KENLFF 73 (316)
T ss_pred CeeeeCCCEEEEEEEECCCCC--EEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEe-----CCEEEE
Confidence 468999999999999765544 89999 13589999999999765 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 74 v~ey~~~g~L~~~l~~~----~~~~~~~~~~~~~qi~~al~~LH 113 (316)
T cd05619 74 VMEYLNGGDLMFHIQSC----HKFDLPRATFYAAEIICGLQFLH 113 (316)
T ss_pred EEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999743 35889999999999999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=129.87 Aligned_cols=100 Identities=30% Similarity=0.479 Sum_probs=83.2
Q ss_pred ccccccceeccCCceeEEEEEEC--CCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILN--HDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~--~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.+|+..+.||+|+||.||+|.+. +...++.||+| +.++||||+++++++.. .+..
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~~ 80 (284)
T cd05081 4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGRR 80 (284)
T ss_pred ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEcc---CCCC
Confidence 46788899999999999999864 22234589999 57899999999998754 2245
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.+++++.+ ..++|..+..++.|+++||+|||
T Consensus 81 ~~~lv~e~~~~~~L~~~l~~~~---~~l~~~~~~~~~~~l~~aL~~LH 125 (284)
T cd05081 81 NLRLVMEYLPYGSLRDYLQKHR---ERLDHRKLLLYASQICKGMEYLG 125 (284)
T ss_pred ceEEEEEecCCCCHHHHHHhcC---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999997542 35899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-12 Score=129.88 Aligned_cols=95 Identities=29% Similarity=0.444 Sum_probs=76.9
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
+.||+|+||+||+|+...+.....+++| +.++||||++++++|.. ....++|||
T Consensus 1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-----~~~~~lv~e 75 (268)
T cd05086 1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVE-----AIPYLLVFE 75 (268)
T ss_pred CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecC-----CCccEEEEe
Confidence 3689999999999986544333356666 35799999999999765 667899999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.+++++........++..+..++.||++||+|||
T Consensus 76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH 116 (268)
T cd05086 76 YCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMH 116 (268)
T ss_pred cCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999864322344677788899999999999998
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=132.16 Aligned_cols=89 Identities=21% Similarity=0.376 Sum_probs=76.6
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||+||+|+..+.+. .|||| ...+||||+++++++.. ++..|+
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~-----~~~~~l 73 (316)
T cd05592 1 KVLGKGSFGKVMLAELKGTNE--FFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQT-----KEHLFF 73 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCC--EEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEc-----CCEEEE
Confidence 468999999999999765444 89999 13489999999998654 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.++++.. ..+++.++..++.|++.||+|||
T Consensus 74 v~e~~~gg~L~~~~~~~----~~~~~~~~~~~~~qi~~al~~LH 113 (316)
T cd05592 74 VMEYLNGGDLMFHIQSS----GRFDEARARFYAAEIICGLQFLH 113 (316)
T ss_pred EEcCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998743 35889999999999999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=128.39 Aligned_cols=95 Identities=27% Similarity=0.435 Sum_probs=82.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
++|+..+.||+|+||+||+|...++ . .||+| ++++||||++++++|.. .+..+
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~-~--~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 75 (256)
T cd05113 4 KDLTFLKELGTGQFGVVKYGKWRGQ-Y--DVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTK-----QRPIY 75 (256)
T ss_pred HHeEEeeEecCcccceEEEEEecCC-C--cEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEcc-----CCCcE
Confidence 4578889999999999999987543 2 58998 57899999999999765 56789
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.++++... ..++|.++..++.||+.|++|||
T Consensus 76 lv~e~~~~~~l~~~i~~~~---~~~~~~~~~~~~~~i~~~l~~lH 117 (256)
T cd05113 76 IVTEYMSNGCLLNYLREHG---KRFQPSQLLEMCKDVCEGMAYLE 117 (256)
T ss_pred EEEEcCCCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997542 35899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=131.98 Aligned_cols=87 Identities=26% Similarity=0.327 Sum_probs=76.3
Q ss_pred eccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 712 IGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 712 ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
||+|+||+||+|+..+.+. .||+| +.++|||||++++++.. ++..|+|||
T Consensus 1 lg~G~~g~Vy~~~~~~~~~--~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv~e 73 (312)
T cd05585 1 IGKGSFGKVMQVRKRDTQR--IYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQS-----PEKLYLVLA 73 (312)
T ss_pred CCcCCCeEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEec-----CCeEEEEEc
Confidence 6999999999999765444 89999 46789999999998765 778999999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 74 ~~~~g~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 110 (312)
T cd05585 74 FINGGELFHHLQRE----GRFDLSRARFYTAELLCALENLH 110 (312)
T ss_pred CCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999753 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-12 Score=146.22 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=86.8
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
...++|.+.+.||+|+||+||+|.....+ ..||+| +.++|||||++++++.. .
T Consensus 10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg--~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~d---e 84 (1021)
T PTZ00266 10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQ--EFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLN---K 84 (1021)
T ss_pred cccCCEEEEEEEecCCCeEEEEEEECCCC--eEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEe---c
Confidence 34568999999999999999999976543 478888 46899999999998754 2
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....+|||||||++|+|.++|.........+++..++.|+.||+.||+|||
T Consensus 85 ~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLH 135 (1021)
T PTZ00266 85 ANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCH 135 (1021)
T ss_pred CCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 246789999999999999999754323356899999999999999999999
|
|
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=132.48 Aligned_cols=89 Identities=33% Similarity=0.429 Sum_probs=77.4
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ++..|+
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~-----~~~~~l 73 (323)
T cd05575 1 KVIGKGSFGKVLLAKHKADGK--FYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-----ADKLYF 73 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCC--EEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEe-----CCEEEE
Confidence 468999999999999765444 89999 35789999999998765 778999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.++++.. ..+++.++..++.||++||+|||
T Consensus 74 v~e~~~~g~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 113 (323)
T cd05575 74 VLDYVNGGELFFHLQRE----RSFPEPRARFYAAEIASALGYLH 113 (323)
T ss_pred EEcCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998743 45889999999999999999998
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-12 Score=140.38 Aligned_cols=201 Identities=38% Similarity=0.494 Sum_probs=146.5
Q ss_pred EEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCC-CCCEEEeeCCeeecccCcCCcCCCCccEEEcccc
Q 040849 374 ILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLH-KLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452 (809)
Q Consensus 374 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 452 (809)
.++++.|.+... +..+..++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 355555655322 223444567778888888777 5555556663 7888888888877 44456777888888888888
Q ss_pred cCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccC
Q 040849 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532 (809)
Q Consensus 453 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 532 (809)
+++ .+|......+.|+.|++++|+++ .+|........+ .++.+++|++. ..+..+..+.++..+.+++|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh-hhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 887 44544557778888888888887 566655444456 67888888644 45566788888888888899887 447
Q ss_pred ccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccc
Q 040849 533 NSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFE 584 (809)
Q Consensus 533 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~ 584 (809)
..++.++.+++|++++|.++...+ ++.+.+++.||+++|.++..+|....
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence 788888899999999999985544 88889999999999999877776543
|
|
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=130.18 Aligned_cols=98 Identities=26% Similarity=0.250 Sum_probs=82.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||.||+|+....+ +.||+| +..+|||||++++++.. ++
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~-----~~ 73 (283)
T cd06617 1 DDLEVIEELGRGAYGVVDKMRHVPTG--TIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFR-----EG 73 (283)
T ss_pred CCceEEEEecccCCeEEEEEEEcCCC--cEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEec-----CC
Confidence 46888899999999999999966543 489999 34689999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||+ |+|.++++........+++..+..++.||+.||+|||
T Consensus 74 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH 120 (283)
T cd06617 74 DVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLH 120 (283)
T ss_pred cEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 7999999997 7888887653333456899999999999999999998
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=132.11 Aligned_cols=89 Identities=31% Similarity=0.397 Sum_probs=76.9
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
++||+|+||+||+|+....+. .||+| +.++|||||++++++.. .+..|+
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~-----~~~~~l 73 (321)
T cd05603 1 KVIGKGSFGKVLLAKRKSDGS--FYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQT-----AEKLYF 73 (321)
T ss_pred CeeeeCCCEEEEEEEECCCCC--EEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEc-----CCEEEE
Confidence 468999999999999765544 89998 35789999999998655 778999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|.+++.+. ..+++.++..++.||++||+|||
T Consensus 74 v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~L~~lH 113 (321)
T cd05603 74 VLDYVNGGELFFHLQRE----RCFLEPRARFYAAEVASAIGYLH 113 (321)
T ss_pred EEcCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888643 45788899999999999999999
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=132.10 Aligned_cols=89 Identities=29% Similarity=0.368 Sum_probs=77.3
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
++||+|+||.||+++....+. .|||| +.++||||+++++++.. ++..++|
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~lv 73 (328)
T cd05593 1 KLLGKGTFGKVILVREKASGK--YYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQT-----KDRLCFV 73 (328)
T ss_pred CeeeeCCCEEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-----CCEEEEE
Confidence 468999999999999655444 89999 46789999999998654 7789999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||+++|+|.+++... ..+++.++..++.|++.||+|||
T Consensus 74 ~Ey~~~g~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~LH 112 (328)
T cd05593 74 MEYVNGGELFFHLSRE----RVFSEDRTRFYGAEIVSALDYLH 112 (328)
T ss_pred EeCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998743 35899999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-12 Score=135.42 Aligned_cols=95 Identities=26% Similarity=0.313 Sum_probs=83.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|...+.||+|+||+||+|+....+. .|||| +.++||||+++++++.. +
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~ 73 (350)
T cd05573 1 DDFEVIKVIGRGAFGEVWLVRDKDTGQ--VYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQD-----E 73 (350)
T ss_pred CCceEEEEEEeCCcEEEEEEEECCCCC--EEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheec-----C
Confidence 368889999999999999999765434 89999 46789999999998654 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.+++.+. ..+++..+..++.|+++||+|||
T Consensus 74 ~~~~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~i~~qi~~aL~~LH 118 (350)
T cd05573 74 EHLYLVMEYMPGGDLMNLLIRK----DVFPEETARFYIAELVLALDSVH 118 (350)
T ss_pred CeEEEEEcCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999754 45889999999999999999998
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=128.67 Aligned_cols=95 Identities=29% Similarity=0.410 Sum_probs=78.0
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
+.||+|+||+||+|+...+.....+|+| +.++||||++++++|.. ....++|||
T Consensus 1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~-----~~~~~lv~e 75 (269)
T cd05042 1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIE-----SIPYLLVLE 75 (269)
T ss_pred CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECC-----CCceEEEEE
Confidence 3689999999999986554444578888 45789999999999765 677999999
Q ss_pred ccCCCChhhhhcCCCC-CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPE-APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~-~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.++++..+. .....++..+..++.|+++|++|||
T Consensus 76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH 117 (269)
T cd05042 76 FCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH 117 (269)
T ss_pred eCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999976432 1233578889999999999999999
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=128.05 Aligned_cols=99 Identities=25% Similarity=0.369 Sum_probs=84.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++.. .
T Consensus 2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 74 (267)
T cd08228 2 ANFQIEKKIGRGQFSEVYRATCLLDRK--PVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIE-----D 74 (267)
T ss_pred cceeeeeeeccCCCeeEEEEEEeCCCC--EEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEE-----C
Confidence 478889999999999999999765544 89998 46789999999998765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.+++.........+++..+..++.|+++||+|||
T Consensus 75 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH 123 (267)
T cd08228 75 NELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH 123 (267)
T ss_pred CeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999988643323345889999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=132.76 Aligned_cols=97 Identities=25% Similarity=0.489 Sum_probs=81.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCc--eeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.+|+..+.||+|+||+||+|++...+. ...||+| +.++||||++++|+|..
T Consensus 7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~------ 80 (316)
T cd05108 7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------ 80 (316)
T ss_pred hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcC------
Confidence 468889999999999999998754332 2348998 56799999999999864
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++|+||+++|+|.++++... ..+++..+.+++.|||+||+|||
T Consensus 81 ~~~~~v~e~~~~g~l~~~l~~~~---~~~~~~~~~~~~~qi~~~L~~LH 126 (316)
T cd05108 81 STVQLITQLMPFGCLLDYVREHK---DNIGSQYLLNWCVQIAKGMNYLE 126 (316)
T ss_pred CCceeeeecCCCCCHHHHHHhcc---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999998542 35889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=132.45 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=79.4
Q ss_pred ccceeccC--CceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 708 LENLIGAG--SFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 708 ~~~~ig~G--~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
..++||+| +||+||++.....+. .||+| +.++|||||++++++.. ++..
T Consensus 2 ~~~~ig~G~~~~~~v~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~-----~~~~ 74 (327)
T cd08227 2 LLTVIGRGFEDLMTVNLARYKPTGE--YVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIA-----DNEL 74 (327)
T ss_pred hhhhccccccceEEEEEEeecccCc--EEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEE-----CCEE
Confidence 35789999 789999999765544 89999 35799999999999876 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|||||++|+|.+++..+. ...+++.++..++.|+++||+|||
T Consensus 75 ~lv~e~~~~~~l~~~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH 118 (327)
T cd08227 75 WVVTSFMAYGSAKDLICTHF--MDGMSELAIAYILQGVLKALDYIH 118 (327)
T ss_pred EEEEeccCCCcHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997542 234899999999999999999999
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=131.74 Aligned_cols=89 Identities=29% Similarity=0.345 Sum_probs=77.0
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
+.||+|+||+||+++....+ +.||+| +.++||||+++++++.. ++..++|
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~--~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~-----~~~~~lv 73 (325)
T cd05594 1 KLLGKGTFGKVILVKEKATG--RYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-----HDRLCFV 73 (325)
T ss_pred CeeeeCCCEEEEEEEECCCC--CEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEc-----CCEEEEE
Confidence 46899999999999965443 489999 45789999999998655 7789999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||+++|+|.+++... ..+++.++..++.|++.||+|||
T Consensus 74 ~E~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~lH 112 (325)
T cd05594 74 MEYANGGELFFHLSRE----RVFSEDRARFYGAEIVSALDYLH 112 (325)
T ss_pred EeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988743 35899999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=131.99 Aligned_cols=89 Identities=33% Similarity=0.413 Sum_probs=77.2
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. ++..|+
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~-----~~~~~l 73 (325)
T cd05604 1 KVIGKGSFGKVLLAKRKLDGK--CYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-----TEKLYF 73 (325)
T ss_pred CceeeCCCeEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEec-----CCEEEE
Confidence 468999999999999765444 89999 35789999999998765 778999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.+++... ..+++.++..++.||++||+|||
T Consensus 74 v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~al~~lH 113 (325)
T cd05604 74 VLDFVNGGELFFHLQRE----RSFPEPRARFYAAEIASALGYLH 113 (325)
T ss_pred EEcCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988743 45899999999999999999999
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=129.70 Aligned_cols=103 Identities=26% Similarity=0.512 Sum_probs=84.2
Q ss_pred hcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEeeeeecccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
..++|+..+.||+|+||.||+|.... ...+..|||| +.++||||+++++++..
T Consensus 4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~--- 80 (277)
T cd05062 4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ--- 80 (277)
T ss_pred cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC---
Confidence 45679999999999999999998642 1234579998 36789999999999764
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCC------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEA------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...++||||+++|+|.++++..+.. ...+++.++..++.|+++|++|||
T Consensus 81 --~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH 136 (277)
T cd05062 81 --GQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN 136 (277)
T ss_pred --CCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999753211 234678999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=128.65 Aligned_cols=95 Identities=21% Similarity=0.428 Sum_probs=81.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|...+.||+|+||+||+|.....+. .||+| +.++||||+++++++.. ++.
T Consensus 5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~ 77 (288)
T cd07871 5 ETYVKLDKLGEGTYATVFKGRSKLTEN--LVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHT-----ERC 77 (288)
T ss_pred ccceEeeEEecCCCEEEEEEEECCCCC--EEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcC-----CCe
Confidence 568889999999999999999665434 89998 46899999999998654 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||++ |+|.+++.... ..+++.++..++.||++||+|||
T Consensus 78 ~~lv~e~~~-~~l~~~l~~~~---~~~~~~~~~~~~~qi~~aL~~LH 120 (288)
T cd07871 78 LTLVFEYLD-SDLKQYLDNCG---NLMSMHNVKIFMFQLLRGLSYCH 120 (288)
T ss_pred EEEEEeCCC-cCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999997 59999987542 34789999999999999999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=127.47 Aligned_cols=96 Identities=29% Similarity=0.433 Sum_probs=83.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.++|+..+.||+|+||.||+|+....+. .||+| +.++||||+++++++.. ++.
T Consensus 8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~--~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~-----~~~ 80 (267)
T cd06646 8 QHDYELIQRVGSGTYGDVYKARNLHTGE--LAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLS-----REK 80 (267)
T ss_pred hhhcchhheeecCCCeEEEEEEECCCCe--EEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEe-----CCE
Confidence 3468899999999999999999755444 89998 46789999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+||||+++|+|.++++.. ..+++.++..++.|+++||+|||
T Consensus 81 ~~iv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH 123 (267)
T cd06646 81 LWICMEYCGGGSLQDIYHVT----GPLSELQIAYVCRETLQGLAYLH 123 (267)
T ss_pred EEEEEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998743 35889999999999999999998
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=126.83 Aligned_cols=90 Identities=28% Similarity=0.536 Sum_probs=78.1
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
+.||+|+||.||+|+....++ .||+| +.++||||++++++|.. ++..++|||
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~--~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~lv~e 73 (252)
T cd05084 1 ERIGRGNFGEVFSGRLRADNT--PVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ-----KQPIYIVME 73 (252)
T ss_pred CccCcccCccEEEEEEecCCc--eEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-----CCCeEEEEe
Confidence 468999999999999765444 89998 56799999999999765 677999999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.++++... ..++|.++..++.|+++||+|||
T Consensus 74 ~~~~~~L~~~~~~~~---~~~~~~~~~~~~~qi~~~L~~lH 111 (252)
T cd05084 74 LVQGGDFLTFLRTEG---PRLKVKELIQMVENAAAGMEYLE 111 (252)
T ss_pred eccCCcHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999997532 35889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=131.65 Aligned_cols=89 Identities=24% Similarity=0.337 Sum_probs=76.6
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCC-CCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSI-RHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l-~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
++||+|+||+||+|+....+. .|||| ..+ +||||+++++++.. ++..|+
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~--~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~-----~~~~~l 73 (329)
T cd05588 1 RVIGRGSYAKVLLVELKKTRR--IYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQT-----ESRLFF 73 (329)
T ss_pred CeEeeCCCeEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEc-----CCEEEE
Confidence 468999999999999765544 89999 123 79999999998765 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|.+++.+. ..+++..+..++.|++.||+|||
T Consensus 74 v~e~~~~g~L~~~~~~~----~~l~~~~~~~~~~qi~~~l~~lH 113 (329)
T cd05588 74 VIEFVSGGDLMFHMQRQ----RKLPEEHARFYSAEISLALNFLH 113 (329)
T ss_pred EEeCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988643 45899999999999999999998
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=130.95 Aligned_cols=94 Identities=24% Similarity=0.292 Sum_probs=80.2
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+|...+.||+|+||+||+|+....+. .|||| ...+|++|+++++++.. .
T Consensus 1 df~~~~~lg~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~ 73 (323)
T cd05616 1 DFNFLMVLGKGSFGKVMLAERKGTDE--LYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQT-----M 73 (323)
T ss_pred CceEEEEEeeCCCeEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEec-----C
Confidence 47888999999999999999765444 89999 12268999999998655 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 74 ~~~~lv~E~~~~g~L~~~~~~~----~~~~~~~~~~~~~qi~~aL~~LH 118 (323)
T cd05616 74 DRLYFVMEYVNGGDLMYQIQQV----GRFKEPHAVFYAAEIAIGLFFLH 118 (323)
T ss_pred CEEEEEEcCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998743 35889999999999999999998
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=127.89 Aligned_cols=103 Identities=26% Similarity=0.355 Sum_probs=85.2
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccC
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
++.+++++.....||+|+||.||+|+..+.+. .||+| +.++|+||+++++++..
T Consensus 3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~--~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---- 76 (268)
T cd06624 3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQV--RIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSE---- 76 (268)
T ss_pred cccccccCCceEEEecCCceEEEEeEecCCCc--EEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeecc----
Confidence 34456677777899999999999999765544 79998 57899999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++++|.++++.+. .....++..+..++.|+++||+|||
T Consensus 77 -~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH 125 (268)
T cd06624 77 -NGFFKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLH 125 (268)
T ss_pred -CCEEEEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998542 1122378899999999999999999
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.2e-12 Score=129.88 Aligned_cols=99 Identities=27% Similarity=0.561 Sum_probs=85.7
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++..+|+..+.||+|+||.||+|...++ . .+|+| +.++||||+++++++.. .
T Consensus 3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~-~--~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~ 74 (261)
T cd05148 3 RPREEFTLERKLGSGYFGEVWEGLWKNR-V--RVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSV-----G 74 (261)
T ss_pred CcHHHHHHhhhhccCCCccEEEeEecCC-C--cEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEec-----C
Confidence 3456788999999999999999997663 3 78888 57899999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.++++... ...+++.++.+++.|++.|++|||
T Consensus 75 ~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~al~~lH 121 (261)
T cd05148 75 EPVYIITELMEKGSLLAFLRSPE--GQVLPVASLIDMACQVAEGMAYLE 121 (261)
T ss_pred CCeEEEEeecccCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999998643 345899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-11 Score=127.87 Aligned_cols=101 Identities=23% Similarity=0.393 Sum_probs=80.9
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
+|+..+.||+|+||+||+|+.... .++.|||| +.++||||++++++|......+
T Consensus 2 ~Y~~~~~lg~G~~g~Vy~~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~ 80 (290)
T cd07862 2 QYECVAEIGEGAYGKVFKARDLKN-GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR 80 (290)
T ss_pred CcceeeEeccCCCeEEEEEEEcCC-CCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence 588889999999999999986432 23478998 1347999999999986433334
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++||||++ |+|.+++.... ...+++.++..++.|+++||+|||
T Consensus 81 ~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~lH 127 (290)
T cd07862 81 ETKLTLVFEHVD-QDLTTYLDKVP--EPGVPTETIKDMMFQLLRGLDFLH 127 (290)
T ss_pred CCcEEEEEccCC-CCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 566899999996 69999987542 245899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=130.21 Aligned_cols=101 Identities=27% Similarity=0.514 Sum_probs=83.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCC-CCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSI-RHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|.....+....+|+| .++ +||||+++++++.. ++
T Consensus 7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~-----~~ 81 (303)
T cd05088 7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-----RG 81 (303)
T ss_pred hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECC-----CC
Confidence 4688889999999999999997654443456777 245 89999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+||||+++|+|.++++..+. ....+++.+++.++.|+++|++|||
T Consensus 82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH 141 (303)
T cd05088 82 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 141 (303)
T ss_pred CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999975421 1235889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=128.35 Aligned_cols=97 Identities=26% Similarity=0.510 Sum_probs=83.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|+..++||+|+||.||+|...++ . .||+| +.++|+||+++++++.. ++..
T Consensus 5 ~~~~~~~~~lg~g~~g~v~~~~~~~~-~--~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 76 (261)
T cd05072 5 RESIKLVKKLGAGQFGEVWMGYYNNS-T--KVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTK-----EEPI 76 (261)
T ss_pred hHHeEEeeecCCcCCceEEEEEecCC-c--eEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcC-----CCCc
Confidence 35788899999999999999996544 3 68998 57899999999998654 6778
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.++++... ...+++.++..++.|+++|++|||
T Consensus 77 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~l~~~l~~LH 120 (261)
T cd05072 77 YIITEYMAKGSLLDFLKSDE--GGKVLLPKLIDFSAQIAEGMAYIE 120 (261)
T ss_pred EEEEecCCCCcHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997542 345889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=131.02 Aligned_cols=91 Identities=26% Similarity=0.302 Sum_probs=77.5
Q ss_pred ceeccCCceeEEEEEECC-CCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 710 NLIGAGSFGSVYKGILNH-DDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~-~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
+.||+|+||+||+++... ...++.||+| ++++||||+++++++.. ++..|+|
T Consensus 2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~lv 76 (318)
T cd05582 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQT-----EGKLYLI 76 (318)
T ss_pred ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEc-----CCEEEEE
Confidence 579999999999987532 2234589999 46789999999998765 7789999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||+++|+|.+++.+. ..+++.++..++.||++||+|||
T Consensus 77 ~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~~l~~lH 115 (318)
T cd05582 77 LDFLRGGDLFTRLSKE----VMFTEEDVKFYLAELALALDHLH 115 (318)
T ss_pred EcCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999643 35899999999999999999998
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=138.62 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=83.6
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.|...+.||+|+||.||+|..... .++.||+| +.++|||||++++++.. ++..|
T Consensus 68 ~y~~~~~lg~G~~g~vy~a~~~~~-~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~-----~~~~~ 141 (478)
T PTZ00267 68 MYVLTTLVGRNPTTAAFVATRGSD-PKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKS-----DDKLL 141 (478)
T ss_pred eEEEEEEEEeCCCcEEEEEEEcCC-CCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEE-----CCEEE
Confidence 388889999999999999986543 13467888 57899999999999765 77899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||||++|+|.++++.+......+++.++..++.||+.||+|||
T Consensus 142 lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH 186 (478)
T PTZ00267 142 LIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVH 186 (478)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988754323456899999999999999999998
|
|
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=131.07 Aligned_cols=89 Identities=29% Similarity=0.385 Sum_probs=76.4
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||+||+|+....+. .|||| ...+||||+++++++.. .+..|+
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~-----~~~~~i 73 (320)
T cd05590 1 RVLGKGSFGKVMLARLKESGR--LYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQT-----PDRLFF 73 (320)
T ss_pred CeeeeCCCeEEEEEEEcCCCC--EEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEc-----CCEEEE
Confidence 468999999999999765444 89999 12379999999998655 778999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|.++++.. ..+++.++..++.|++.||+|||
T Consensus 74 v~Ey~~~g~L~~~i~~~----~~l~~~~~~~~~~ql~~~L~~lH 113 (320)
T cd05590 74 VMEFVNGGDLMFHIQKS----RRFDEARARFYAAEITSALMFLH 113 (320)
T ss_pred EEcCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998743 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=129.27 Aligned_cols=98 Identities=23% Similarity=0.350 Sum_probs=85.0
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+.++|+..+.||+|+||.||+|.....+. .||+| ++++||||+++++++.. +.
T Consensus 3 ~~~~~~i~~~l~~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 75 (280)
T cd06611 3 PNDIWEIIGELGDGAFGKVYKAQHKETGL--FAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFY-----EN 75 (280)
T ss_pred chhHHHHHHHhcCCCCceEEEEEEcCCCc--EEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEec-----CC
Confidence 34568889999999999999999765434 89999 56899999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+||||+++|+|.+++...+ ..+++.++..++.|++.||+|||
T Consensus 76 ~~~lv~e~~~~~~L~~~~~~~~---~~l~~~~~~~~~~ql~~~l~~lh 120 (280)
T cd06611 76 KLWILIEFCDGGALDSIMLELE---RGLTEPQIRYVCRQMLEALNFLH 120 (280)
T ss_pred eEEEEeeccCCCcHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987542 45899999999999999999998
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.4e-12 Score=134.07 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=84.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+-|..++.+|+|+-|.|-.|+.. .+|+.+||| +-+.||||+++|+++.. .
T Consensus 12 GpwkLgkTLG~Gstg~vrlakh~--~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~-----~ 84 (786)
T KOG0588|consen 12 GPWKLGKTLGKGSTGCVRLAKHA--ETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWEN-----K 84 (786)
T ss_pred cceeccccccCCCCceehhhhcc--cccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeecc-----C
Confidence 45778899999999999999954 456699999 45789999999999654 8
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+|+|.||+++|.|++++.++ +++++.++.+++.||..|++|+|
T Consensus 85 ~~lylvlEyv~gGELFdylv~k----G~l~e~eaa~ff~QIi~gv~yCH 129 (786)
T KOG0588|consen 85 QHLYLVLEYVPGGELFDYLVRK----GPLPEREAAHFFRQILDGVSYCH 129 (786)
T ss_pred ceEEEEEEecCCchhHHHHHhh----CCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999865 46899999999999999999998
|
|
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=130.74 Aligned_cols=89 Identities=24% Similarity=0.346 Sum_probs=76.6
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||+||+|+....+. .||+| +..+|||||++++++.. ++..++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~-----~~~~~l 73 (329)
T cd05618 1 RVIGRGSYAKVLLVRLKKTER--IYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-----ESRLFF 73 (329)
T ss_pred CeeeeCCCeEEEEEEECCCCC--EEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEe-----CCEEEE
Confidence 468999999999999765544 89998 12489999999998765 778999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|..++... ..+++..+..|+.|++.||+|||
T Consensus 74 v~E~~~~~~L~~~~~~~----~~l~~~~~~~i~~qi~~~l~~lH 113 (329)
T cd05618 74 VIEYVNGGDLMFHMQRQ----RKLPEEHARFYSAEISLALNYLH 113 (329)
T ss_pred EEeCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888643 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-11 Score=127.73 Aligned_cols=97 Identities=27% Similarity=0.418 Sum_probs=80.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCc--eeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|.+...+. ...||+| +.++|||||++++++. +
T Consensus 7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~------~ 80 (279)
T cd05111 7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP------G 80 (279)
T ss_pred hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC------C
Confidence 467788999999999999999754332 2247777 4678999999999864 3
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++|+||+++|+|.++++.+. ..++|..+..++.||+.||+|||
T Consensus 81 ~~~~~i~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~qi~~~l~~lH 126 (279)
T cd05111 81 ASLQLVTQLSPLGSLLDHVRQHR---DSLDPQRLLNWCVQIAKGMYYLE 126 (279)
T ss_pred CccEEEEEeCCCCcHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999997542 45899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=126.98 Aligned_cols=98 Identities=30% Similarity=0.490 Sum_probs=82.7
Q ss_pred ccccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.+|+..+.||+|+||.||+|+....+ ....+|+| +.++||||+++++++.. ++
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 78 (267)
T cd05066 4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK-----SK 78 (267)
T ss_pred HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----CC
Confidence 46788899999999999999864322 23468888 46789999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.++++... ..+++.++..|+.|++.|++|||
T Consensus 79 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH 123 (267)
T cd05066 79 PVMIVTEYMENGSLDAFLRKHD---GQFTVIQLVGMLRGIASGMKYLS 123 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999997542 45899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=128.24 Aligned_cols=101 Identities=23% Similarity=0.252 Sum_probs=83.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||.|++|.||+|.....+ +.||+| +.++||||+++++++.. .++..
T Consensus 1 ~~~~~~~~lg~g~~~~v~~~~~~~~~--~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~~~ 75 (287)
T cd06621 1 EKIVELSRLGEGAGGSVTKCRLKNTG--MIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLD---ESSSS 75 (287)
T ss_pred CceEEEEEeccCCceEEEEEEECCCC--eEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEc---cCCCe
Confidence 35788899999999999999976543 489999 56899999999998764 22456
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++.........+++..+..++.|+++||+|||
T Consensus 76 ~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH 122 (287)
T cd06621 76 IGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH 122 (287)
T ss_pred EEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887643223455889999999999999999998
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-12 Score=137.05 Aligned_cols=93 Identities=30% Similarity=0.414 Sum_probs=79.1
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|...+.||.|+||.||-|+.... ...|||| +.++|||+|.+.|||.. +..
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n--~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLr-----e~T 100 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRN--SEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLR-----EHT 100 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCc--cceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeec-----cch
Confidence 67778999999999999995544 3489999 57899999999999765 677
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+|||||- |+-.+++.-++ +++.+.++..|+.|++.||+|||
T Consensus 101 aWLVMEYCl-GSAsDlleVhk---KplqEvEIAAi~~gaL~gLaYLH 143 (948)
T KOG0577|consen 101 AWLVMEYCL-GSASDLLEVHK---KPLQEVEIAAITHGALQGLAYLH 143 (948)
T ss_pred HHHHHHHHh-ccHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHH
Confidence 999999995 57777776442 56889999999999999999998
|
|
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=128.79 Aligned_cols=95 Identities=22% Similarity=0.376 Sum_probs=80.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++||||+++++++.. ++
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 73 (287)
T cd07848 1 NKFEVLGVVGEGAYGVVLKCRHKETKE--IVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRR-----RG 73 (287)
T ss_pred CCceEEEEecccCCEEEEEEEECCCCc--EEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEec-----CC
Confidence 368889999999999999999765444 89998 46789999999998765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+||||+++|.+..+.+. ...+++.++..++.|++.||+|||
T Consensus 74 ~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~~qi~~~L~~lH 117 (287)
T cd07848 74 KLYLVFEYVEKNMLELLEEM----PNGVPPEKVRSYIYQLIKAIHWCH 117 (287)
T ss_pred EEEEEEecCCCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999877655432 245889999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=125.72 Aligned_cols=99 Identities=29% Similarity=0.412 Sum_probs=85.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||.||+|.....+. .||+| ++++|+||+++++++.. +
T Consensus 2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~-----~ 74 (267)
T cd08224 2 GNFKIEKKIGKGQFSVVYKAICLLDGR--VVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIE-----N 74 (267)
T ss_pred CceeeeeeeccCCceEEEEEEEcCCCC--EEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeec-----C
Confidence 578899999999999999999764434 88988 46789999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.+++.........+++.++..++.|+++|++|||
T Consensus 75 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh 123 (267)
T cd08224 75 NELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH 123 (267)
T ss_pred CeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998754333456899999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=130.24 Aligned_cols=94 Identities=23% Similarity=0.304 Sum_probs=78.8
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCC-CCcceeeEeeeeeccccCCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSI-RHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l-~H~niv~l~~~~~~~~~~~~ 760 (809)
+|+..+.||+|+||+||+|+....+. .||+| +.+ +|++|+++++++.. .
T Consensus 1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~ 73 (323)
T cd05615 1 DFNFLMVLGKGSFGKVMLAERKGTDE--LYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQT-----V 73 (323)
T ss_pred CceEEEEEEecCCeEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEec-----C
Confidence 36778999999999999999765444 89999 122 46788888887654 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++... ..+++.++..|+.|++.||+|||
T Consensus 74 ~~~~lv~Ey~~~g~L~~~i~~~----~~l~~~~~~~i~~qi~~al~~lH 118 (323)
T cd05615 74 DRLYFVMEYVNGGDLMYHIQQV----GKFKEPQAVFYAAEISVGLFFLH 118 (323)
T ss_pred CEEEEEEcCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998743 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-11 Score=128.55 Aligned_cols=96 Identities=24% Similarity=0.460 Sum_probs=81.7
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.++|+..+.||+|+||+||+|+....+. .|||| +.++||||+++++++.. ++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~ 76 (303)
T cd07869 4 ADSYEKLEKLGEGSYATVYKGKSKVNGK--LVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHT-----KE 76 (303)
T ss_pred cccceEeeeEEecCCEEEEEEEECCCCC--EEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEec-----CC
Confidence 4679999999999999999999765434 89999 46789999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||+ |+|.+++..+. ..+++.++..++.|++.||+|||
T Consensus 77 ~~~lv~e~~~-~~l~~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH 120 (303)
T cd07869 77 TLTLVFEYVH-TDLCQYMDKHP---GGLHPENVKLFLFQLLRGLSYIH 120 (303)
T ss_pred eEEEEEECCC-cCHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999996 68888886432 45889999999999999999998
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=128.84 Aligned_cols=104 Identities=26% Similarity=0.474 Sum_probs=84.0
Q ss_pred HhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEeeeeeccc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~ 756 (809)
...++|+..+.||+|+||.||+|..++ +..+..||+| +.++||||+++++++..
T Consensus 3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-- 80 (288)
T cd05061 3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSK-- 80 (288)
T ss_pred ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC--
Confidence 345678999999999999999997543 2234479999 46789999999998765
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCC------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPE------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...++||||+++|+|.++++.... .....++..+..++.|++.||+|||
T Consensus 81 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH 136 (288)
T cd05061 81 ---GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN 136 (288)
T ss_pred ---CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999975321 1133567889999999999999998
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-11 Score=129.99 Aligned_cols=89 Identities=27% Similarity=0.362 Sum_probs=76.4
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
++||+|+||+||+|+....+. .|||| ...+||||+++++++.. ++..|+
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~-----~~~~~l 73 (321)
T cd05591 1 KVLGKGSFGKVMLAELKGTDE--VYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQT-----KDRLFF 73 (321)
T ss_pred CccccCCCeEEEEEEECCCCC--EEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-----CCeEEE
Confidence 468999999999999765444 89999 12479999999999765 778999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.+++... ..+++..+..++.|+++||+|||
T Consensus 74 v~E~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 113 (321)
T cd05591 74 VMEYVNGGDLMFQIQRS----RKFDEPRSRFYAAEVTLALMFLH 113 (321)
T ss_pred EEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998743 35889999999999999999998
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-11 Score=125.61 Aligned_cols=92 Identities=32% Similarity=0.518 Sum_probs=76.2
Q ss_pred ceeccCCceeEEEEEECCCC----------ceeEEEEe--------------------cCCCCcceeeEeeeeeccccCC
Q 040849 710 NLIGAGSFGSVYKGILNHDD----------HETLVAVK--------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~----------~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
+.||+|+||.||+|++..+. ....||+| +.++|||||++++++..
T Consensus 1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~----- 75 (262)
T cd05077 1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVR----- 75 (262)
T ss_pred CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEec-----
Confidence 36899999999999864321 12357888 46899999999999865
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...++||||+++|+|..+++.+. ..+++..+..++.|||+||+|||
T Consensus 76 ~~~~~lv~e~~~~~~l~~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH 122 (262)
T cd05077 76 DVENIMVEEFVEFGPLDLFMHRKS---DVLTTPWKFKVAKQLASALSYLE 122 (262)
T ss_pred CCCCEEEEecccCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHhh
Confidence 567899999999999999987542 35899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=126.40 Aligned_cols=101 Identities=25% Similarity=0.456 Sum_probs=83.9
Q ss_pred ccccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
++|+..+.||+|+||+||+|+.... ...+.||+| ++++||||+++++++..
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----- 79 (275)
T cd05046 5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCRE----- 79 (275)
T ss_pred HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECC-----
Confidence 5688889999999999999996532 123478898 56789999999998754
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCC-----CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEA-----PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~-----~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++||||+++|+|.++++..+.. ...+++.++..++.|+++||+|||
T Consensus 80 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH 134 (275)
T cd05046 80 AEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS 134 (275)
T ss_pred CCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh
Confidence 67789999999999999999754311 125899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-11 Score=129.55 Aligned_cols=89 Identities=31% Similarity=0.419 Sum_probs=76.8
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. ++..|+
T Consensus 1 ~~lg~G~fg~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~-----~~~~~l 73 (325)
T cd05602 1 KVIGKGSFGKVLLARHKAEEK--FYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT-----ADKLYF 73 (325)
T ss_pred CeeeeCCCeEEEEEEECCCCC--EEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEc-----CCeEEE
Confidence 468999999999999765544 89999 34789999999998765 778999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.++++.. ..+.+.++..++.||++||+|||
T Consensus 74 v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~qi~~~L~~lH 113 (325)
T cd05602 74 VLDYINGGELFYHLQRE----RCFLEPRARFYAAEIASALGYLH 113 (325)
T ss_pred EEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999743 34788899999999999999999
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-11 Score=135.86 Aligned_cols=104 Identities=26% Similarity=0.448 Sum_probs=81.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeeccccC---CCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDFQ---GNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~~---~~~~~ 763 (809)
..+|...+.||+|+||+||+|...+.+. .|||| +.++|||||++++++....+. ....+
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~--~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 142 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSE--KVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFL 142 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCC--EEEEEEEecCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEE
Confidence 4579999999999999999999765444 89999 578999999999876542221 22357
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|||||++ ++.+++.........+++..+..|+.|+++||+|||
T Consensus 143 ~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH 187 (440)
T PTZ00036 143 NVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIH 187 (440)
T ss_pred EEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999985 777776532223456899999999999999999999
|
|
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-11 Score=138.37 Aligned_cols=102 Identities=24% Similarity=0.310 Sum_probs=82.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCC-CcceeeEeeeeeccc-cCC-C
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIR-HRNLVKIITSCASVD-FQG-N 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~-H~niv~l~~~~~~~~-~~~-~ 760 (809)
..+++.+.|.+|||+.||.|+...++ +.||+| +.++ |||||.+++...... -.. .
T Consensus 37 ~~v~V~~vLAEGGFa~VYla~~~~~~--~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~ 114 (738)
T KOG1989|consen 37 HRVTVEKVLAEGGFAQVYLAQDVKGG--KKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGV 114 (738)
T ss_pred EEEEEEEEEccCCcEEEEEEEecCCC--ceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCce
Confidence 35677899999999999999976654 489999 3454 999999999432211 122 3
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
-+++|.||||+||.|-+++..+.. ..|++.++++|+.|+|+|+++||
T Consensus 115 ~EvllLmEyC~gg~Lvd~mn~Rlq--~~lte~eVLkIf~dv~~AVa~mH 161 (738)
T KOG1989|consen 115 WEVLLLMEYCKGGSLVDFMNTRLQ--TRLTEDEVLKIFYDVCEAVAAMH 161 (738)
T ss_pred eEEEeehhhccCCcHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999986642 33999999999999999999999
|
|
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=124.83 Aligned_cols=96 Identities=26% Similarity=0.363 Sum_probs=83.6
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||+|+....+. .|++| +.++||||+++++++.. ++.
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 73 (256)
T cd08529 1 DFEILNKIGKGSFGVVFKVVRKADKR--VYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLD-----KGK 73 (256)
T ss_pred CceEeEEecCCCCeEEEEEEEcCCCc--EEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeecc-----CCE
Confidence 47778999999999999999765544 78888 57899999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++++|.++++... ...+++.++..++.|++.||+|||
T Consensus 74 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~~l~~al~~lH 118 (256)
T cd08529 74 LNIVMEYAENGDLHKLLKMQR--GRPLPEDQVWRFFIQILLGLAHLH 118 (256)
T ss_pred EEEEEEeCCCCcHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998542 346889999999999999999998
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-11 Score=124.49 Aligned_cols=90 Identities=26% Similarity=0.480 Sum_probs=76.4
Q ss_pred eeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEEec
Q 040849 711 LIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEF 769 (809)
Q Consensus 711 ~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey 769 (809)
.||+|+||.||+|.+.....+..||+| ++++||||++++++|. .+..++||||
T Consensus 2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~------~~~~~lv~e~ 75 (257)
T cd05115 2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE------AEALMLVMEM 75 (257)
T ss_pred ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc------CCCeEEEEEe
Confidence 489999999999987644344478998 5689999999999864 3468999999
Q ss_pred cCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 770 MVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 770 ~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++|+|.++++.++ ..+++.++.+++.|+++||+|||
T Consensus 76 ~~~~~L~~~l~~~~---~~~~~~~~~~~~~~i~~~l~~lH 112 (257)
T cd05115 76 ASGGPLNKFLSGKK---DEITVSNVVELMHQVSMGMKYLE 112 (257)
T ss_pred CCCCCHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999997432 45899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-11 Score=128.96 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=78.5
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCC-cceeeEeeeeeccccCCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRH-RNLVKIITSCASVDFQGN 760 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H-~niv~l~~~~~~~~~~~~ 760 (809)
+|+..+.||+|+||.||+|+..+.+. .|||| +.++| ++|+++++++.. .
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~ 73 (324)
T cd05587 1 DFNFLMVLGKGSFGKVMLAERKGTDE--LYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-----M 73 (324)
T ss_pred CceEEEEEeeccCeEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEc-----C
Confidence 47888999999999999999765434 89999 23444 568888887654 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++... ..+++.++..++.|++.||+|||
T Consensus 74 ~~~~lv~E~~~~g~L~~~~~~~----~~~~~~~~~~~~~qi~~al~~lH 118 (324)
T cd05587 74 DRLYFVMEYVNGGDLMYHIQQV----GKFKEPHAVFYAAEIAIGLFFLH 118 (324)
T ss_pred CEEEEEEcCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999743 35889999999999999999998
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-11 Score=125.75 Aligned_cols=97 Identities=28% Similarity=0.512 Sum_probs=82.8
Q ss_pred cccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|...+.||+|+||.||+|+....+ ....|||| +.++||||+++++++.. +..
T Consensus 5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-----~~~ 79 (269)
T cd05065 5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK-----SRP 79 (269)
T ss_pred HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECC-----CCc
Confidence 4778899999999999999976543 23469999 46889999999998654 677
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.++++..+ ..+++.++..++.|++.|++|||
T Consensus 80 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~~l~~al~~lH 123 (269)
T cd05065 80 VMIITEFMENGALDSFLRQND---GQFTVIQLVGMLRGIAAGMKYLS 123 (269)
T ss_pred eEEEEecCCCCcHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997542 45899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-11 Score=126.87 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=84.9
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCC-CCcceeeEeeeeeccccC-C
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSI-RHRNLVKIITSCASVDFQ-G 759 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l-~H~niv~l~~~~~~~~~~-~ 759 (809)
.+.+.|+..+.||+|+||+||+|.....+. .||+| +++ +||||+++++++...... .
T Consensus 3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~--~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~ 80 (272)
T cd06637 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQ--LAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGM 80 (272)
T ss_pred ChhhhhhHHHheeecCCeEEEEEEEcCCCc--EEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCC
Confidence 345678888999999999999999765444 89999 234 799999999998652211 1
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...|+||||+++|+|.+++...+ ...++|..+..++.|++.|++|||
T Consensus 81 ~~~~~iv~e~~~~~~L~~~l~~~~--~~~l~~~~~~~~~~qi~~~l~~LH 128 (272)
T cd06637 81 DDQLWLVMEFCGAGSVTDLIKNTK--GNTLKEEWIAYICREILRGLSHLH 128 (272)
T ss_pred CcEEEEEEEcCCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999997542 245889999999999999999998
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-11 Score=130.24 Aligned_cols=98 Identities=24% Similarity=0.384 Sum_probs=80.8
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.|+..+.||+|+||.||+|.....+. .|||| +.++||||+++++++......+...
T Consensus 1 ry~i~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 78 (338)
T cd07859 1 RYKIQEVIGKGSYGVVCSAIDTHTGE--KVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKD 78 (338)
T ss_pred CeEEEEEEeecCCeEEEEEEECCCCC--EEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCce
Confidence 37788999999999999999655434 89999 4678999999999886533333346
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+|||||+ ++|.+++... ..+++..+..++.|+++||+|||
T Consensus 79 ~~lv~e~~~-~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH 120 (338)
T cd07859 79 IYVVFELME-SDLHQVIKAN----DDLTPEHHQFFLYQLLRALKYIH 120 (338)
T ss_pred EEEEEecCC-CCHHHHHHhc----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 899999995 6899988743 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-11 Score=126.65 Aligned_cols=102 Identities=31% Similarity=0.504 Sum_probs=85.1
Q ss_pred cccccccceeccCCceeEEEEEECCCC---ceeEEEEe---------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDD---HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~---~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|...+.||+|+||.||+|...... ....||+| +.++|+||+++++++..
T Consensus 5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---- 80 (277)
T cd05036 5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFE---- 80 (277)
T ss_pred HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc----
Confidence 456888999999999999999976521 34578998 47899999999998765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCC---CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPE---APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~---~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++||||+++|+|.++++..+. ....++|.++.+++.||+.|++|||
T Consensus 81 -~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH 133 (277)
T cd05036 81 -RLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE 133 (277)
T ss_pred -CCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999975431 1235899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-11 Score=132.65 Aligned_cols=103 Identities=25% Similarity=0.383 Sum_probs=81.8
Q ss_pred cccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCC-CCcceeeEeeeeecccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSI-RHRNLVKIITSCASVDF 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~~ 757 (809)
.++|...+.||+|+||+||+|.... ...++.|||| .++ +|||||+++++|..
T Consensus 6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~--- 82 (343)
T cd05103 6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK--- 82 (343)
T ss_pred hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeec---
Confidence 4578899999999999999998532 1234589999 344 68999999998754
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCC-----------------------------------------------------
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPE----------------------------------------------------- 784 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~----------------------------------------------------- 784 (809)
.+...++|||||++|+|.++++.++.
T Consensus 83 -~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (343)
T cd05103 83 -PGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDV 161 (343)
T ss_pred -CCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccc
Confidence 24568999999999999999875321
Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 785 ----------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 785 ----------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++|.++..++.|+++||+|||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH 196 (343)
T cd05103 162 EEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLA 196 (343)
T ss_pred hhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 0124788999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=134.20 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=95.3
Q ss_pred ccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeecc
Q 040849 694 VSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASV 755 (809)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~ 755 (809)
..++.+...++.|++.++||.|.+|+||+++-.+.++...++|| ..-+|||++.+||++...
T Consensus 9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~ 88 (953)
T KOG0587|consen 9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKK 88 (953)
T ss_pred cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEe
Confidence 34555666778899999999999999999997766663344444 345899999999998776
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...++.+|+|||||.+||..|++++-. +..+.|+.+..|++++++|+.+||
T Consensus 89 ~~~~~DqLWLVMEfC~gGSVTDLVKn~~--g~rl~E~~IaYI~re~lrgl~HLH 140 (953)
T KOG0587|consen 89 DPGNGDQLWLVMEFCGGGSVTDLVKNTK--GNRLKEEWIAYILREILRGLAHLH 140 (953)
T ss_pred cCCCCCeEEEEeeccCCccHHHHHhhhc--ccchhhHHHHHHHHHHHHHHHHHh
Confidence 6666789999999999999999998764 567999999999999999999998
|
|
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-11 Score=127.05 Aligned_cols=99 Identities=26% Similarity=0.360 Sum_probs=84.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||.||+|.....+. .|||| +.++||||+++++++.. +
T Consensus 2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~--~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~ 74 (267)
T cd08229 2 ANFRIEKKIGRGQFSEVYRATCLLDGV--PVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-----D 74 (267)
T ss_pred chhhhhhhhcccCCeEEEEEeecCCCc--eEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEe-----C
Confidence 468888999999999999999654434 88998 46789999999998765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..+++|||+++|+|.+++.........++|.++..++.|+++||+|||
T Consensus 75 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH 123 (267)
T cd08229 75 NELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMH 123 (267)
T ss_pred CeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998743323456899999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-11 Score=126.04 Aligned_cols=97 Identities=30% Similarity=0.573 Sum_probs=83.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.+|+..+.||+|+||.||+|...+.+. .||+| +.++||||+++++++.. ++..+
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~--~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 78 (263)
T cd05052 6 TDITMKHKLGGGQYGEVYEGVWKKYSL--TVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----EPPFY 78 (263)
T ss_pred HHeEEeeecCCcccceEEEEEEecCCc--eEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcC-----CCCcE
Confidence 357788999999999999999765444 89999 46889999999999765 67789
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 79 lv~e~~~~~~L~~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lH 121 (263)
T cd05052 79 IITEFMTYGNLLDYLRECN--RQEVNAVVLLYMATQISSAMEYLE 121 (263)
T ss_pred EEEEeCCCCcHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997542 245899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-11 Score=128.42 Aligned_cols=89 Identities=25% Similarity=0.391 Sum_probs=76.7
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||.||+|+....+. .||+| ...+||||+++++++.. ++..|+
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~~~~~l 73 (316)
T cd05620 1 KVLGKGSFGKVLLAELKGKGE--YFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQT-----KEHLFF 73 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCC--EEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEe-----CCEEEE
Confidence 468999999999999765444 89999 13589999999998655 778999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.+++..+ ..+++.++..++.|+++||+|||
T Consensus 74 v~E~~~~g~L~~~i~~~----~~~~~~~~~~~~~qi~~~l~~lH 113 (316)
T cd05620 74 VMEFLNGGDLMFHIQDK----GRFDLYRATFYAAEIVCGLQFLH 113 (316)
T ss_pred EECCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998743 35889999999999999999998
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-11 Score=129.10 Aligned_cols=95 Identities=26% Similarity=0.375 Sum_probs=83.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCC-CcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIR-HRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~-H~niv~l~~~~~~~~~~ 758 (809)
.+.|++.+.||+|.||.||+++.+.. ++.+|+| +.+. |||||++++++..
T Consensus 34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~t--g~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~---- 107 (382)
T KOG0032|consen 34 KEKYELGRELGRGQFGVVYLCREKST--GKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFED---- 107 (382)
T ss_pred cccEEehhhhCCCCceEEEEEEecCC--CceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEc----
Confidence 45688889999999999999997654 4489999 3556 9999999999665
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...+++|||+|+||+|++.+... .+++..+..+++||+.|+.|||
T Consensus 108 -~~~~~lvmEL~~GGeLfd~i~~~-----~~sE~da~~~~~~il~av~~lH 152 (382)
T KOG0032|consen 108 -PDSVYLVMELCEGGELFDRIVKK-----HYSERDAAGIIRQILEAVKYLH 152 (382)
T ss_pred -CCeEEEEEEecCCchHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999854 2899999999999999999999
|
|
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-11 Score=128.30 Aligned_cols=89 Identities=26% Similarity=0.368 Sum_probs=76.5
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCC-CCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSI-RHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l-~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||+||+|+....+. .|||| +.+ +||||+++++++.. .+..|+
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~-----~~~~~l 73 (318)
T cd05570 1 KVLGKGSFGKVLLAELKGTDE--LYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQT-----KDRLFF 73 (318)
T ss_pred CeeeeCCCeEEEEEEECCCCC--EEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-----CCEEEE
Confidence 468999999999999765544 89999 123 79999999998765 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.+++... ..+++.++..++.|++.||+|||
T Consensus 74 v~e~~~~~~L~~~~~~~----~~l~~~~~~~~~~qi~~~l~~LH 113 (318)
T cd05570 74 VMEYVNGGDLMFHIQRS----GRFDEPRARFYAAEIVLGLQFLH 113 (318)
T ss_pred EEcCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998743 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-11 Score=125.87 Aligned_cols=92 Identities=27% Similarity=0.416 Sum_probs=77.4
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
...||+|++|.||+|.+.+ . .|||| ++++|||||+++|++... .++....++
T Consensus 25 ~~~i~~g~~~~v~~~~~~~--~--~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~-~~~~~~~~l 99 (283)
T PHA02988 25 SVLIKENDQNSIYKGIFNN--K--EVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDI-VDDLPRLSL 99 (283)
T ss_pred CeEEeeCCceEEEEEEECC--E--EEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEec-ccCCCceEE
Confidence 3679999999999999742 2 89999 578999999999987541 122456899
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|.++++.. ..++|.++.+++.|++.||+|||
T Consensus 100 v~Ey~~~g~L~~~l~~~----~~~~~~~~~~i~~~i~~~l~~lH 139 (283)
T PHA02988 100 ILEYCTRGYLREVLDKE----KDLSFKTKLDMAIDCCKGLYNLY 139 (283)
T ss_pred EEEeCCCCcHHHHHhhC----CCCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999754 35889999999999999999998
|
|
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-11 Score=127.22 Aligned_cols=102 Identities=25% Similarity=0.489 Sum_probs=84.6
Q ss_pred cccccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|...+.||+|+||.||+|..... .....||+| +.++||||+++++++..
T Consensus 5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~---- 80 (277)
T cd05032 5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVST---- 80 (277)
T ss_pred hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcC----
Confidence 45788889999999999999997542 233579999 46789999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCC------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEA------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++||||+++|+|.++++..... ...++|.++..++.|++.|++|||
T Consensus 81 -~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH 136 (277)
T cd05032 81 -GQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA 136 (277)
T ss_pred -CCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999754311 234789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-11 Score=132.05 Aligned_cols=91 Identities=33% Similarity=0.400 Sum_probs=76.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++|+|||++++++.. ++.
T Consensus 74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 146 (353)
T PLN00034 74 SELERVNRIGSGAGGTVYKVIHRPTGR--LYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDH-----NGE 146 (353)
T ss_pred HHHhhhhhccCCCCeEEEEEEECCCCC--EEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEecc-----CCe
Confidence 346677899999999999999765444 89999 46899999999998654 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.+.. ..++..+..++.||++||+|||
T Consensus 147 ~~lv~e~~~~~~L~~~~--------~~~~~~~~~i~~qi~~aL~~LH 185 (353)
T PLN00034 147 IQVLLEFMDGGSLEGTH--------IADEQFLADVARQILSGIAYLH 185 (353)
T ss_pred EEEEEecCCCCcccccc--------cCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986532 2567788899999999999998
|
|
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-11 Score=125.05 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=76.1
Q ss_pred eccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 712 IGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 712 ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
||+|+||+||+++....+. .||+| ++++||||+++++++.. +...++|||
T Consensus 1 lg~G~~g~Vy~~~~~~~~~--~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~-----~~~~~lv~e 73 (277)
T cd05607 1 LGKGGFGEVCAVQVKNTGK--MYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFES-----KTHLCLVMS 73 (277)
T ss_pred CCCCCceEEEEEEEccCCc--EEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEec-----CCeEEEEEe
Confidence 6999999999999765434 89988 46789999999998654 678999999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.++++... ...+++..+..++.|++.||+|||
T Consensus 74 ~~~g~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH 112 (277)
T cd05607 74 LMNGGDLKYHIYNVG--ERGLEMERVIHYSAQITCGILHLH 112 (277)
T ss_pred cCCCCCHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999998886542 245889999999999999999998
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-11 Score=129.08 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=77.4
Q ss_pred ceeccCCceeEEEEEECCC-CceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 710 NLIGAGSFGSVYKGILNHD-DHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~-~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
+.||+|+||.||+++...+ ..++.|||| +.++||||+++++++.. ++..|
T Consensus 2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-----~~~~~ 76 (323)
T cd05584 2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQT-----GGKLY 76 (323)
T ss_pred ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEec-----CCeEE
Confidence 6799999999999986432 234589998 46799999999998765 67899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.+++++. ..+.+..+..++.|+++||+|||
T Consensus 77 lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH 117 (323)
T cd05584 77 LILEYLSGGELFMHLERE----GIFMEDTACFYLSEISLALEHLH 117 (323)
T ss_pred EEEeCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999743 35788899999999999999998
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-11 Score=124.09 Aligned_cols=94 Identities=29% Similarity=0.448 Sum_probs=81.3
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+|+..+.||+|+||.||+|....+ . .+|+| +.++||||+++++++.. .+..++
T Consensus 5 ~~~~~~~lg~G~~~~v~~~~~~~~-~--~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~l 76 (256)
T cd05059 5 ELTFLKELGSGQFGVVHLGKWRGK-I--DVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTK-----QRPIFI 76 (256)
T ss_pred HcchhhhhccCCCceEEEeEecCC-c--cEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcC-----CCceEE
Confidence 577889999999999999986543 2 68888 56899999999998754 677999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.++++.+. ..++|.++..++.|+++|++|||
T Consensus 77 v~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~~l~~lH 117 (256)
T cd05059 77 VTEYMANGCLLNYLRERK---GKLGTEWLLDMCSDVCEAMEYLE 117 (256)
T ss_pred EEecCCCCCHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997543 35899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-11 Score=124.61 Aligned_cols=98 Identities=27% Similarity=0.510 Sum_probs=83.3
Q ss_pred ccccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||.||+|+....+ ....+|+| +.++||||+++++++.. .+
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 79 (268)
T cd05063 5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTK-----FK 79 (268)
T ss_pred HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEcc-----CC
Confidence 46888899999999999999976432 23478888 46789999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.++++.+. ..+++.++..++.|++.|++|||
T Consensus 80 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~l~~al~~lH 124 (268)
T cd05063 80 PAMIITEYMENGALDKYLRDHD---GEFSSYQLVGMLRGIAAGMKYLS 124 (268)
T ss_pred CcEEEEEcCCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999997542 45899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-11 Score=125.46 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=81.5
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|+..+.||+|+||.||+|.....+ +.|||| +.++|++|+++++++.. ++.
T Consensus 2 f~~~~~ig~G~~g~v~~~~~~~~~--~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-----~~~ 74 (285)
T cd05630 2 FRQYRVLGKGGFGEVCACQVRATG--KMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYET-----KDA 74 (285)
T ss_pred ceeeEEeecCCCeEEEEEEEcCCC--ceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEec-----CCE
Confidence 667789999999999999976544 489998 46789999999998765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++...+ ...+++.++..++.|++.||+|||
T Consensus 75 ~~lv~e~~~g~~L~~~l~~~~--~~~l~~~~~~~~~~qi~~~l~~lH 119 (285)
T cd05630 75 LCLVLTLMNGGDLKFHIYHMG--EAGFEEGRAVFYAAEICCGLEDLH 119 (285)
T ss_pred EEEEEEecCCCcHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986542 245899999999999999999998
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-11 Score=127.98 Aligned_cols=89 Identities=25% Similarity=0.337 Sum_probs=76.5
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe-----------------------cC-CCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RS-IRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~-l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||+||+|+....+. .||+| .+ .+||||+++++++.. .+..|+
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-----~~~~~l 73 (327)
T cd05617 1 RVIGRGSYAKVLLVRLKKNDQ--IYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQT-----TSRLFL 73 (327)
T ss_pred CeeeeCCCeEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEe-----CCEEEE
Confidence 469999999999999766544 89999 12 379999999998654 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|.+++... ..+++.++..|+.|+++||+|||
T Consensus 74 v~e~~~~~~L~~~~~~~----~~l~~~~~~~~~~qi~~al~~lH 113 (327)
T cd05617 74 VIEYVNGGDLMFHMQRQ----RKLPEEHARFYAAEICIALNFLH 113 (327)
T ss_pred EEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988643 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-11 Score=127.66 Aligned_cols=104 Identities=26% Similarity=0.465 Sum_probs=85.1
Q ss_pred HhcccccccceeccCCceeEEEEEECCCC---ceeEEEEe---------------------cCC-CCcceeeEeeeeecc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDD---HETLVAVK---------------------RSI-RHRNLVKIITSCASV 755 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~---~~~~vavK---------------------~~l-~H~niv~l~~~~~~~ 755 (809)
...++|+..+.||+|+||.||+|...... ....+|+| +++ +|+||+++++++..
T Consensus 9 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~- 87 (293)
T cd05053 9 LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQ- 87 (293)
T ss_pred cCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcC-
Confidence 34456888899999999999999875421 23478999 244 79999999999765
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCC------------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKP------------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~------------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++.++ .....+++..+..++.|++.|++|||
T Consensus 88 ----~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH 149 (293)
T cd05053 88 ----EGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA 149 (293)
T ss_pred ----CCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999997532 12356899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-11 Score=128.84 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=80.4
Q ss_pred cccccceeccCCceeEEEEEECC-CCceeEEEEe------------------------cCC-CCcceeeEeeeeeccccC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNH-DDHETLVAVK------------------------RSI-RHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~-~~~~~~vavK------------------------~~l-~H~niv~l~~~~~~~~~~ 758 (809)
+|+..+.||+|+||+||+++... ...++.||+| +.+ +||+|+++++++..
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~---- 76 (332)
T cd05614 1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQT---- 76 (332)
T ss_pred CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEec----
Confidence 47888999999999999998542 1234589999 234 59999999988654
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.+++..+ ..+++.++..++.||++||+|||
T Consensus 77 -~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 122 (332)
T cd05614 77 -EAKLHLILDYVSGGEMFTHLYQR----DNFSEDEVRFYSGEIILALEHLH 122 (332)
T ss_pred -CCEEEEEEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 35889999999999999999999
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-11 Score=125.53 Aligned_cols=101 Identities=27% Similarity=0.501 Sum_probs=82.5
Q ss_pred ccccccceeccCCceeEEEEEEC--CCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILN--HDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~--~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|... +...++.||+| +.++||||+++++++.. +
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~ 79 (283)
T cd05090 5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQ-----E 79 (283)
T ss_pred hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEec-----C
Confidence 45778899999999999999853 22234578998 57899999999998765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCC-------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPE-------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++..+.. ....+++.++..++.|++.||+|||
T Consensus 80 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH 141 (283)
T cd05090 80 QPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS 141 (283)
T ss_pred CceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999863321 1234789999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-11 Score=125.08 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=81.3
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|+..+.||+|+||+||+|.....+. .||+| +.++|+||+++++++.. ++.
T Consensus 2 ~~~~~~lg~G~~g~vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-----~~~ 74 (285)
T cd05632 2 FRQYRVLGKGGFGEVCACQVRATGK--MYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYET-----KDA 74 (285)
T ss_pred ceEEEEEecCCCeEEEEEEECCCCc--EEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEec-----CCE
Confidence 5667889999999999999765434 89999 46789999999988655 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++...+ ...+++..+..++.|++.||+|||
T Consensus 75 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~ql~~~l~~lH 119 (285)
T cd05632 75 LCLVLTIMNGGDLKFHIYNMG--NPGFEEERALFYAAEILCGLEDLH 119 (285)
T ss_pred EEEEEEeccCccHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887542 235899999999999999999998
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-11 Score=129.14 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=85.0
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
....|.....||+|.|++|..|+....+. .|||| +.+.|||||+++.+...
T Consensus 54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~--~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t----- 126 (596)
T KOG0586|consen 54 SVGLYVIIKTIGKGNFAKVKLARHILTGT--EVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIET----- 126 (596)
T ss_pred cccceeeeeeeccceeEEEEeeEecCCCc--eEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeee-----
Confidence 45678899999999999999999766544 99999 57899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..+|+||||+.+|++++++.++. ...+..+..++.|+.+|++|+|
T Consensus 127 ~~~lylV~eya~~ge~~~yl~~~g----r~~e~~ar~~F~q~vsaveYcH 172 (596)
T KOG0586|consen 127 EATLYLVMEYASGGELFDYLVKHG----RMKEKEARAKFRQIVSAVEYCH 172 (596)
T ss_pred cceeEEEEEeccCchhHHHHHhcc----cchhhhhhhhhHHHHHHHHHHh
Confidence 788999999999999999998763 3556788999999999999999
|
|
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-11 Score=128.59 Aligned_cols=102 Identities=27% Similarity=0.472 Sum_probs=83.1
Q ss_pred cccccccceeccCCceeEEEEEECCCC-----ceeEEEEe---------------------cCC-CCcceeeEeeeeecc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDD-----HETLVAVK---------------------RSI-RHRNLVKIITSCASV 755 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~-----~~~~vavK---------------------~~l-~H~niv~l~~~~~~~ 755 (809)
.++|...+.||+|+||.||+|...... ....||+| +.+ +||||++++++|..
T Consensus 17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~- 95 (307)
T cd05098 17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ- 95 (307)
T ss_pred hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec-
Confidence 356889999999999999999854311 12368998 234 79999999999865
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+||||+++|+|.++++.++. ....++|.++++++.|++.||+|||
T Consensus 96 ----~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH 157 (307)
T cd05098 96 ----DGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA 157 (307)
T ss_pred ----CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999976432 1235889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-11 Score=139.76 Aligned_cols=99 Identities=22% Similarity=0.359 Sum_probs=82.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+ +.|||| +.++|||||++++++.. +
T Consensus 2 grYeIi~~LGkGgfG~VYlA~d~~tg--~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d-----~ 74 (932)
T PRK13184 2 QRYDIIRLIGKGGMGEVYLAYDPVCS--RRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSD-----G 74 (932)
T ss_pred CCeEEEEEEecCCCEEEEEEEECCCC--cEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEee-----C
Confidence 46888999999999999999965543 489999 46789999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCC-------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKP-------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~-------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.++++... ......++..+.+++.||++||+|||
T Consensus 75 ~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH 130 (932)
T PRK13184 75 DPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH 130 (932)
T ss_pred CEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999986421 11234677889999999999999998
|
|
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.8e-11 Score=123.73 Aligned_cols=93 Identities=31% Similarity=0.437 Sum_probs=81.0
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
-|+..+.||+|+||.||+|.....+. .||+| +.++||||+++++++.. ++..
T Consensus 5 ~~~~~~~ig~G~~~~vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~ 77 (277)
T cd06641 5 LFTKLEKIGKGSFGEVFKGIDNRTQK--VVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DTKL 77 (277)
T ss_pred hhhhheeEeecCCeEEEEEEECCCCc--EEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEe-----CCeE
Confidence 36778899999999999998654434 89999 46889999999999765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.+++.. ..+++.++..++.|++.|++|||
T Consensus 78 ~lv~e~~~~~~l~~~i~~-----~~~~~~~~~~~~~~l~~~l~~lh 118 (277)
T cd06641 78 WIIMEYLGGGSALDLLEP-----GPLDETQIATILREILKGLDYLH 118 (277)
T ss_pred EEEEEeCCCCcHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999863 34889999999999999999998
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-11 Score=125.73 Aligned_cols=95 Identities=32% Similarity=0.369 Sum_probs=83.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||.||++.....+. .||+| +.++||||+++++++.. +
T Consensus 1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 73 (290)
T cd05580 1 DDFEFIKTLGTGSFGRVMLVRHKGSGK--YYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQD-----D 73 (290)
T ss_pred CceEEEEEeecCCCeEEEEEEEcCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEc-----C
Confidence 368889999999999999999765444 89998 45789999999998765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.++++.. ..+++..+..++.|+++||+|||
T Consensus 74 ~~~~~v~e~~~~~~L~~~~~~~----~~l~~~~~~~~~~qil~~l~~lH 118 (290)
T cd05580 74 SNLYLVMEYVPGGELFSHLRKS----GRFPEPVARFYAAQVVLALEYLH 118 (290)
T ss_pred CeEEEEEecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999754 45889999999999999999998
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-11 Score=126.41 Aligned_cols=95 Identities=25% Similarity=0.234 Sum_probs=82.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||+|+||+||++.....+. .||+| +.++||||+++++++.. ...
T Consensus 5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~--~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~ 77 (284)
T cd06620 5 EDLETISDLGAGNGGSVSKVKHIPTGT--VMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLN-----ENN 77 (284)
T ss_pred HHHHHHHHcCCCCCeEEEEEEEcCCCc--EEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEec-----CCE
Confidence 467888999999999999999765444 78888 46799999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++++. ..+++..+..++.|++.||+|||
T Consensus 78 ~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~i~~~l~~LH 120 (284)
T cd06620 78 ICMCMEFMDCGSLDRIYKKG----GPIPVEILGKIAVAVVEGLTYLY 120 (284)
T ss_pred EEEEEecCCCCCHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998753 35899999999999999999998
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.6e-12 Score=135.05 Aligned_cols=101 Identities=29% Similarity=0.415 Sum_probs=81.4
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccc-cCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVD-FQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~-~~~~~~~ 763 (809)
+...+.+|+|+||.||+|+.+ .+|+.|||| ++++|||||+++++-.+.. ..-.+..
T Consensus 15 W~~~e~LG~Ga~g~V~rgrnk--etG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~ 92 (732)
T KOG4250|consen 15 WEMDERLGKGAFGNVYRGRNK--ETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLP 92 (732)
T ss_pred eeehhhhcCCccceeeeeccc--ccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccc
Confidence 445688999999999999944 456699999 6899999999999733210 0003446
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+|||||.+|||...+.+-+ ....+++.+.+.+..+++.||.|||
T Consensus 93 vlvmEyC~gGsL~~~L~~PE-N~~GLpE~e~l~lL~d~~~al~~Lr 137 (732)
T KOG4250|consen 93 VLVMEYCSGGSLRKVLNSPE-NAYGLPESEFLDLLSDLVSALRHLR 137 (732)
T ss_pred eEEEeecCCCcHHHHhcCcc-cccCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998643 4566999999999999999999998
|
|
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-11 Score=126.58 Aligned_cols=100 Identities=27% Similarity=0.439 Sum_probs=83.0
Q ss_pred cccccccceeccCCceeEEEEEEC---CCCceeEEEEe---------------------cCC-CCcceeeEeeeeecccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVK---------------------RSI-RHRNLVKIITSCASVDF 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~---~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~~ 757 (809)
.++|...+.||+|+||.||+|+.. ....+..|||| +++ +||||+++++++..
T Consensus 34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~--- 110 (302)
T cd05055 34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTI--- 110 (302)
T ss_pred HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEec---
Confidence 356888999999999999999852 12234578998 356 79999999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+||||+++|+|.++++... ...+++.++..++.|++.|++|||
T Consensus 111 --~~~~~lv~e~~~~~~L~~~i~~~~--~~~l~~~~~~~i~~~i~~~l~~lH 158 (302)
T cd05055 111 --GGPILVITEYCCYGDLLNFLRRKR--ESFLTLEDLLSFSYQVAKGMAFLA 158 (302)
T ss_pred --CCceEEEEEcCCCCcHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999997542 234899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-11 Score=126.93 Aligned_cols=101 Identities=25% Similarity=0.521 Sum_probs=82.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCC-CCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSI-RHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|...+.+....+|+| +++ +||||+++++++.. .+
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-----~~ 76 (297)
T cd05089 2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACEN-----RG 76 (297)
T ss_pred ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEcc-----CC
Confidence 4688889999999999999997665443346776 345 79999999998765 66
Q ss_pred eEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+||||+++|+|.++++.... ....+++.++..|+.|++.|++|||
T Consensus 77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH 136 (297)
T cd05089 77 YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS 136 (297)
T ss_pred cceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999975321 1235889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-11 Score=124.08 Aligned_cols=96 Identities=23% Similarity=0.403 Sum_probs=81.5
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++.. ++.
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 73 (285)
T cd07861 1 DYTKIEKIGEGTYGVVYKGRNKKTGQ--IVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQ-----ESR 73 (285)
T ss_pred CceEeeEecccCceEEEEEEECCCCc--EEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEee-----CCe
Confidence 47788999999999999999765444 89998 35789999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||++ |+|.++++... ....+++.++..++.|+++||+|||
T Consensus 74 ~~~v~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH 118 (285)
T cd07861 74 LYLIFEFLS-MDLKKYLDSLP-KGQYMDAELVKSYLYQILQGILFCH 118 (285)
T ss_pred EEEEEecCC-CCHHHHHhcCC-CCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999997 68998887543 2356899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-11 Score=129.83 Aligned_cols=97 Identities=22% Similarity=0.364 Sum_probs=83.2
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------cCCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
...+|...+.||+|+||+||+|+....+ +.||+| +.++|||||++++++.. ++..++||
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv~ 136 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQP--DPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVS-----GAITCMVL 136 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCCC--ceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEe-----CCeeEEEE
Confidence 3457999999999999999999976543 489999 57899999999999765 67789999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||+. |+|.+++..+ ...++|.++..|+.||+.||+|||
T Consensus 137 e~~~-~~l~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH 174 (357)
T PHA03209 137 PHYS-SDLYTYLTKR---SRPLPIDQALIIEKQILEGLRYLH 174 (357)
T ss_pred EccC-CcHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9995 6899888753 245899999999999999999998
|
|
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-11 Score=123.42 Aligned_cols=98 Identities=33% Similarity=0.583 Sum_probs=84.3
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
..++|...++||+|+||.||+|...++ . .|||| ++++|+||+++++++.. +..
T Consensus 4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~-~--~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 75 (261)
T cd05034 4 PRESLKLERKLGAGQFGEVWMGTWNGT-T--KVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSE-----EEP 75 (261)
T ss_pred chhheeeeeeeccCcceEEEEEEEcCC-c--eEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeec-----CCc
Confidence 356788999999999999999996543 3 68998 57889999999998654 577
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.++++... ...+++.++..++.|++.|++|||
T Consensus 76 ~~~v~e~~~~~~L~~~i~~~~--~~~~~~~~~~~~~~~i~~al~~lh 120 (261)
T cd05034 76 IYIVTEYMSKGSLLDFLKSGE--GKKLRLPQLVDMAAQIAEGMAYLE 120 (261)
T ss_pred eEEEEeccCCCCHHHHHhccc--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997642 345899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-11 Score=123.64 Aligned_cols=100 Identities=23% Similarity=0.311 Sum_probs=83.6
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.+|.|+||.||++.....+. .||+| +.++||||+++++++.. .++..
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---~~~~~ 75 (265)
T cd08217 1 DYEVLETIGKGSFGTVRKVRRKSDGK--ILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIID---RSNQT 75 (265)
T ss_pred CceeeeeeccCCCeEEEEeeecCCCC--EEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeec---CCCCE
Confidence 47788999999999999999665444 78888 46789999999998653 22566
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+++|||+++|+|.+++.........+++.++..++.|+++|++|||
T Consensus 76 ~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH 122 (265)
T cd08217 76 LYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECH 122 (265)
T ss_pred EEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999754333456899999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-11 Score=124.68 Aligned_cols=97 Identities=29% Similarity=0.482 Sum_probs=81.3
Q ss_pred ccccccceeccCCceeEEEEEECCC-CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|...+.||+|+||.||+|...+. +....|||| +.++||||+++++++.. +
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~------~ 79 (270)
T cd05056 6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE------N 79 (270)
T ss_pred hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC------C
Confidence 4577889999999999999987543 233468888 56789999999998753 4
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.+++.... ..+++.++..++.|++.|++|||
T Consensus 80 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~lH 124 (270)
T cd05056 80 PVWIVMELAPLGELRSYLQVNK---YSLDLASLILYSYQLSTALAYLE 124 (270)
T ss_pred CcEEEEEcCCCCcHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999997542 35899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-11 Score=126.96 Aligned_cols=103 Identities=24% Similarity=0.470 Sum_probs=83.4
Q ss_pred hcccccccceeccCCceeEEEEEECC-----CCceeEEEEe---------------------cCC-CCcceeeEeeeeec
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNH-----DDHETLVAVK---------------------RSI-RHRNLVKIITSCAS 754 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~-----~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~ 754 (809)
..++|...+.||+|+||.||+|+... ...+..||+| +.+ +||||+++++++..
T Consensus 13 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~ 92 (304)
T cd05101 13 SRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 92 (304)
T ss_pred cHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEec
Confidence 34568888999999999999997531 1123478998 345 79999999999765
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....|+||||+++|+|.+++..++. ....++|.++..++.||++||+|||
T Consensus 93 -----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH 154 (304)
T cd05101 93 -----DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA 154 (304)
T ss_pred -----CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999976431 1235789999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.3e-11 Score=126.02 Aligned_cols=102 Identities=31% Similarity=0.517 Sum_probs=83.9
Q ss_pred cccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|+..+.||+|+||.||+|.... +...+.||+| ++++||||++++++|..
T Consensus 4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~---- 79 (288)
T cd05050 4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAV---- 79 (288)
T ss_pred hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcC----
Confidence 4578889999999999999998643 2234589999 46789999999998765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCC------------------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKP------------------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~------------------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++... .....+++.++..++.|++.||+|||
T Consensus 80 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH 147 (288)
T cd05050 80 -GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS 147 (288)
T ss_pred -CCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999997421 11234789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-11 Score=123.36 Aligned_cols=95 Identities=28% Similarity=0.521 Sum_probs=78.2
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe---------------------cCC-CCcceeeEeeeeeccccCCCceEEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSI-RHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
+.||+|+||.||+|+..+.+....+|+| +++ +||||+++++++.. .+..++||
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-----~~~~~lv~ 75 (270)
T cd05047 1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-----RGYLYLAI 75 (270)
T ss_pred CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEec-----CCCceEEE
Confidence 3689999999999998765444457777 355 79999999999765 66789999
Q ss_pred eccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||+++|+|.++++..+. ....++++++..++.|++.|++|||
T Consensus 76 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH 129 (270)
T cd05047 76 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 129 (270)
T ss_pred EeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999975421 1234789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.3e-11 Score=120.88 Aligned_cols=104 Identities=23% Similarity=0.420 Sum_probs=82.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcc-eeeEeeeeeccc-cC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRN-LVKIITSCASVD-FQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~n-iv~l~~~~~~~~-~~ 758 (809)
...|+..++||+|+||+||+|+.+..+ +.||+| ++++|+| ||++++++.... +.
T Consensus 10 ~~~~~~~eklGeGtyg~Vykar~~~~g--~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~ 87 (323)
T KOG0594|consen 10 MFDYEKVEKLGEGTYGVVYKARSKRTG--KFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHR 87 (323)
T ss_pred HHHHHHHHHhCCCCceEEEEEEEecCC--CEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccc
Confidence 345777788999999999999976654 499999 5789999 999999987621 11
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....+++|+||++. +|.+++.........++...+..+++|+++||+|||
T Consensus 88 ~~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H 137 (323)
T KOG0594|consen 88 GIGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLH 137 (323)
T ss_pred ccceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 22378999999975 999999865422134677889999999999999999
|
|
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-11 Score=126.68 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=83.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||+|+||.||++.....+. .||+| +.++||||+++++++.. ++.
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~--~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~ 73 (286)
T cd06622 1 DEIEVLDELGKGNYGSVYKVLHRPTGV--TMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFI-----EGA 73 (286)
T ss_pred ChhhhhhhhcccCCeEEEEEEEcCCCc--EEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheec-----CCe
Confidence 357888999999999999999764434 88998 46789999999998765 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+||||+++|+|.++++... ....+++..+..++.|+++||+|||
T Consensus 74 ~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH 119 (286)
T cd06622 74 VYMCMEYMDAGSLDKLYAGGV-ATEGIPEDVLRRITYAVVKGLKFLK 119 (286)
T ss_pred EEEEEeecCCCCHHHHHHhcc-ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987532 2346899999999999999999998
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-11 Score=126.53 Aligned_cols=92 Identities=29% Similarity=0.481 Sum_probs=76.4
Q ss_pred ceeccCCceeEEEEEECCCCc-----eeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDH-----ETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~-----~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
+.||+|+||.||+|.....+. ...||+| +.++|||||++++++.. ++..+
T Consensus 1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-----~~~~~ 75 (258)
T cd05078 1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVC-----GDESI 75 (258)
T ss_pred CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEe-----CCCcE
Confidence 368999999999998644221 1247777 46789999999999765 56789
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.++++.++ ..+++..+..++.||+.||+|||
T Consensus 76 lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~~~~qi~~~l~~lH 117 (258)
T cd05078 76 MVQEYVKFGSLDTYLKKNK---NLINISWKLEVAKQLAWALHFLE 117 (258)
T ss_pred EEEecCCCCcHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998543 35889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.3e-11 Score=124.79 Aligned_cols=94 Identities=24% Similarity=0.366 Sum_probs=81.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
..|+..+.||+|+||.||+|.....+. .||+| +.++||||+++++++.. +...
T Consensus 20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~--~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~-----~~~~ 92 (296)
T cd06654 20 KKYTRFEKIGQGASGTVYTAMDVATGQ--EVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDEL 92 (296)
T ss_pred cceeeEEEecCCCCeEEEEEEECCCCc--EEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEe-----CCEE
Confidence 468888999999999999998654433 89998 45789999999998765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.++++.. .+++.++..++.|++.|++|||
T Consensus 93 ~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~i~~ql~~aL~~LH 133 (296)
T cd06654 93 WVVMEYLAGGSLTDVVTET-----CMDEGQIAAVCRECLQALEFLH 133 (296)
T ss_pred EEeecccCCCCHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998632 3789999999999999999998
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.6e-11 Score=123.00 Aligned_cols=103 Identities=31% Similarity=0.525 Sum_probs=80.8
Q ss_pred cccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc-CCCceE
Q 040849 707 SLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF-QGNDFK 763 (809)
Q Consensus 707 ~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~~~~~~ 763 (809)
...+.||+|+||.||+|+....+....||+| +.++||||++++++|..... ......
T Consensus 2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 81 (272)
T cd05075 2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP 81 (272)
T ss_pred ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence 4568899999999999997665443468888 46799999999998754211 112357
Q ss_pred EEEEeccCCCChhhhhcCCC--CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKP--EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~--~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|||||++|+|.+++...+ .....++|..+..++.|++.||+|||
T Consensus 82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH 129 (272)
T cd05075 82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS 129 (272)
T ss_pred EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999874322 12345899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-11 Score=124.54 Aligned_cols=95 Identities=29% Similarity=0.426 Sum_probs=82.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
++|...+.||+|+||.||+|+....+. .||+| +.++||||+++++++.. ++..
T Consensus 9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~-----~~~~ 81 (267)
T cd06645 9 EDFELIQRIGSGTYGDVYKARNVNTGE--LAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLR-----RDKL 81 (267)
T ss_pred HHHHHHHHhCCCCCeEEEEEEEcCCCc--EEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEe-----CCEE
Confidence 467888999999999999998655434 89998 46789999999998765 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+||||+++|+|.++++.. ..+++.++..++.|++.|++|||
T Consensus 82 ~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH 123 (267)
T cd06645 82 WICMEFCGGGSLQDIYHVT----GPLSESQIAYVSRETLQGLYYLH 123 (267)
T ss_pred EEEEeccCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743 35899999999999999999998
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-11 Score=124.98 Aligned_cols=101 Identities=30% Similarity=0.543 Sum_probs=83.5
Q ss_pred ccccccceeccCCceeEEEEEECC---CCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.+|...+.||+|+||+||++.... ......+|+| ++++||||+++++++.. +
T Consensus 5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 79 (288)
T cd05093 5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-----G 79 (288)
T ss_pred HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----C
Confidence 468888999999999999998532 1233468888 57899999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCC---------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKP---------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~---------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.++++..+ .....++|.++..++.|++.||+|||
T Consensus 80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH 137 (288)
T cd05093 80 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA 137 (288)
T ss_pred CccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999997432 12235899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-11 Score=125.87 Aligned_cols=95 Identities=20% Similarity=0.418 Sum_probs=80.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|...+.||+|+||.||+|+....+. .||+| ++++||||+++++++.. ++.
T Consensus 6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 78 (309)
T cd07872 6 ETYIKLEKLGEGTYATVFKGRSKLTEN--LVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHT-----DKS 78 (309)
T ss_pred CceEEEEEecccCCEEEEEEEecCCCC--eEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEee-----CCe
Confidence 568889999999999999999655433 89999 46889999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++ +|.+++...+ ..+++.++..++.|+++||+|||
T Consensus 79 ~~lv~e~~~~-~l~~~~~~~~---~~~~~~~~~~~~~qi~~aL~~lH 121 (309)
T cd07872 79 LTLVFEYLDK-DLKQYMDDCG---NIMSMHNVKIFLYQILRGLAYCH 121 (309)
T ss_pred EEEEEeCCCC-CHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999975 8888886542 34789999999999999999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.7e-11 Score=121.28 Aligned_cols=96 Identities=20% Similarity=0.268 Sum_probs=82.2
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+|+..+.||+|+||.||++.....+. .||+| +.++||||+++++++.. ++..
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 73 (255)
T cd08219 1 QYNVLRVVGEGSFGRALLVQHVNSDQ--KYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEA-----DGHL 73 (255)
T ss_pred CceEEEEeeccCCeEEEEEEEcCCCc--eEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEE-----CCEE
Confidence 47778999999999999999765433 78888 46799999999998765 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+||||+++|+|.+++.... ...+++..+..++.|++.||+|||
T Consensus 74 ~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~al~~lH 117 (255)
T cd08219 74 YIVMEYCDGGDLMQKIKLQR--GKLFPEDTILQWFVQMCLGVQHIH 117 (255)
T ss_pred EEEEeeCCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999986432 245789999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.3e-11 Score=124.26 Aligned_cols=107 Identities=26% Similarity=0.347 Sum_probs=87.3
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCC-CCcceeeEeeeeecccc-CC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSI-RHRNLVKIITSCASVDF-QG 759 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l-~H~niv~l~~~~~~~~~-~~ 759 (809)
.++++|+..+.||+|+||.||+|.....+. .||+| +++ +|+||+++++++..... .+
T Consensus 3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~ 80 (275)
T cd06608 3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQ--LVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGN 80 (275)
T ss_pred CchhheeheeeecCCCCeEEEEEEECCCCc--EEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCc
Confidence 356789999999999999999999765433 78888 344 79999999999865322 23
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++||||+++++|.++++........+++..+..++.|+++||+|||
T Consensus 81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH 130 (275)
T cd06608 81 DDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLH 130 (275)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999998754323456899999999999999999998
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-11 Score=122.07 Aligned_cols=96 Identities=33% Similarity=0.537 Sum_probs=83.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|+..+.||+|+||.||+|...+ . .||+| ++++|+||+++++++.. ....
T Consensus 5 ~~~~~~~~~ig~g~~g~v~~~~~~~--~--~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~ 75 (256)
T cd05039 5 SKELKLGATIGKGEFGDVMLGDYRG--Q--KVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQ-----GNPL 75 (256)
T ss_pred hhhccceeeeecCCCceEEEEEecC--c--EEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcC-----CCCe
Confidence 3568888999999999999998542 3 79999 57889999999999764 6779
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.++++... ...++|.++..++.|++.|++|||
T Consensus 76 ~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lh 119 (256)
T cd05039 76 YIVTEYMAKGSLVDYLRSRG--RAVITLAQQLGFALDVCEGMEYLE 119 (256)
T ss_pred EEEEEecCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997542 235899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=121.43 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=82.7
Q ss_pred HHHHhccccccccee--ccCCceeEEEEEECCCCceeEEEEe---------------c-CCCCcceeeEeeeeeccccCC
Q 040849 698 NLFKATDGFSLENLI--GAGSFGSVYKGILNHDDHETLVAVK---------------R-SIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 698 ~~~~~~~~~~~~~~i--g~G~~g~Vy~~~~~~~~~~~~vavK---------------~-~l~H~niv~l~~~~~~~~~~~ 759 (809)
+.....++|+..+.+ |+|+||.||+++.+..+. .+|+| . ..+||||+++++++..
T Consensus 8 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~--~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~----- 80 (267)
T PHA03390 8 ELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQK--LFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTT----- 80 (267)
T ss_pred HHHHHHHhhccccceeecCCCceEEEEEEEcCCCc--EEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEec-----
Confidence 334444566666666 999999999999665544 78888 1 1269999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++... ..++|+++..++.|+++|++|||
T Consensus 81 ~~~~~iv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~~l~~lH 126 (267)
T PHA03390 81 LKGHVLIMDYIKDGDLFDLLKKE----GKLSEAEVKKIIRQLVEALNDLH 126 (267)
T ss_pred CCeeEEEEEcCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999754 36899999999999999999998
|
|
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-11 Score=123.23 Aligned_cols=104 Identities=33% Similarity=0.536 Sum_probs=82.1
Q ss_pred ccccceeccCCceeEEEEEECCCC-ceeEEEEe----------------------cCCCCcceeeEeeeeecccc-CCCc
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDD-HETLVAVK----------------------RSIRHRNLVKIITSCASVDF-QGND 761 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~~~~ 761 (809)
|...+.||+|+||.||+|+...+. ....||+| +.++||||+++++++..... .+..
T Consensus 1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 80 (273)
T cd05035 1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP 80 (273)
T ss_pred CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence 456789999999999999976432 33579999 45789999999998765221 2223
Q ss_pred eEEEEEeccCCCChhhhhcCCC--CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKP--EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~--~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.+++...+ .....+++..+..++.|++.||+|||
T Consensus 81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH 130 (273)
T cd05035 81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS 130 (273)
T ss_pred ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999986432 12346899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.4e-11 Score=125.11 Aligned_cols=95 Identities=24% Similarity=0.457 Sum_probs=81.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|...+.||+|+||.||+|+....+. .||+| +.++||||+++++++.. ++.
T Consensus 6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~-----~~~ 78 (301)
T cd07873 6 ETYIKLDKLGEGTYATVYKGRSKLTDN--LVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-----EKS 78 (301)
T ss_pred cceEEeeEeccCcCEEEEEEEEcCCCc--EEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEec-----CCe
Confidence 568889999999999999999665433 89999 46899999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||++ |+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 79 ~~lv~e~~~-~~l~~~l~~~~---~~~~~~~~~~~~~qi~~aL~~lH 121 (301)
T cd07873 79 LTLVFEYLD-KDLKQYLDDCG---NSINMHNVKLFLFQLLRGLNYCH 121 (301)
T ss_pred EEEEEeccc-cCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999997 69999887542 45889999999999999999998
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-11 Score=125.86 Aligned_cols=101 Identities=28% Similarity=0.491 Sum_probs=82.0
Q ss_pred ccccccceeccCCceeEEEEEECCC------------CceeEEEEe---------------------cCCCCcceeeEee
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD------------DHETLVAVK---------------------RSIRHRNLVKIIT 750 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~------------~~~~~vavK---------------------~~l~H~niv~l~~ 750 (809)
.+|...+.||+|+||.||+|+..+. +....||+| ++++||||+++++
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~ 84 (295)
T cd05097 5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG 84 (295)
T ss_pred HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence 4688889999999999999875431 122358998 4689999999999
Q ss_pred eeeccccCCCceEEEEEeccCCCChhhhhcCCCC--------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 751 SCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPE--------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 751 ~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.. ++..++||||+++|+|.+++..+.. ....++|.++.+++.|+++||+|||
T Consensus 85 ~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH 146 (295)
T cd05097 85 VCVS-----DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA 146 (295)
T ss_pred EEcC-----CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9765 6789999999999999999864321 1124789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-11 Score=123.06 Aligned_cols=96 Identities=25% Similarity=0.493 Sum_probs=82.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|...++||+|+||.||+|...++ . .||+| +.++||||+++++++. .+..
T Consensus 5 ~~~~~~~~~ig~G~~g~v~~~~~~~~-~--~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~~~ 75 (260)
T cd05067 5 RETLKLVKKLGAGQFGEVWMGYYNGH-T--KVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT------QEPI 75 (260)
T ss_pred hHHceeeeeeccCccceEEeeecCCC-c--eEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEc------cCCc
Confidence 45688899999999999999986543 3 79999 5789999999998753 4568
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.++++... ...+++.++..++.|++.||+|||
T Consensus 76 ~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~al~~LH 119 (260)
T cd05067 76 YIITEYMENGSLVDFLKTPE--GIKLTINKLIDMAAQIAEGMAFIE 119 (260)
T ss_pred EEEEEcCCCCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987543 346899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-11 Score=123.85 Aligned_cols=98 Identities=36% Similarity=0.571 Sum_probs=84.1
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
..++|+..+.||+|+||.||+|....+ +.||+| ++++||||+++++++.. .+.
T Consensus 4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~---~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 75 (261)
T cd05068 4 DRTSIQLLRKLGAGQFGEVWEGLWNNT---TPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTL-----EEP 75 (261)
T ss_pred chhheeeEEEecccCCccEEEEEecCC---eEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEec-----CCC
Confidence 345688899999999999999986443 379999 46889999999998765 677
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++.... ...++|.++..++.|++.|++|||
T Consensus 76 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH 120 (261)
T cd05068 76 IYIVTELMKYGSLLEYLQGGA--GRALKLPQLIDMAAQVASGMAYLE 120 (261)
T ss_pred eeeeeecccCCcHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997542 345899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-11 Score=126.23 Aligned_cols=95 Identities=23% Similarity=0.395 Sum_probs=81.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||.||+|...+.+. .||+| +.++||||+++++++.. ++
T Consensus 1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 73 (286)
T cd07846 1 EKYENLGLVGEGSYGMVMKCKHKETGQ--IVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRR-----KK 73 (286)
T ss_pred CceeEeeeeccCCCeEEEEEEECCCCC--EEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhccc-----CC
Confidence 367888999999999999999765444 89999 35789999999999754 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||++++++.++.+.. ..++|.++..++.||++||+|||
T Consensus 74 ~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~i~~~l~~LH 117 (286)
T cd07846 74 RLYLVFEFVDHTVLDDLEKYP----NGLDESRVRKYLFQILRGIEFCH 117 (286)
T ss_pred eEEEEEecCCccHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998877632 34899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-11 Score=125.38 Aligned_cols=101 Identities=36% Similarity=0.585 Sum_probs=84.4
Q ss_pred ccccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
++|...+.||+|+||.||+|+..+. ...+.|||| +.++||||+++++++..
T Consensus 5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----- 79 (280)
T cd05049 5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTE----- 79 (280)
T ss_pred HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEec-----
Confidence 4578889999999999999986543 234579999 46789999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCC----------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKP----------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~----------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++||||+++|+|.++++..+ .....+++.++..++.|++.|++|||
T Consensus 80 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH 139 (280)
T cd05049 80 GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA 139 (280)
T ss_pred CCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999997542 12345789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.5e-11 Score=124.33 Aligned_cols=94 Identities=28% Similarity=0.378 Sum_probs=82.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.+|+..+.||+|+||.||+|.....+. .||+| +.++||||+++++++.. ++..
T Consensus 19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~~ 91 (297)
T cd06656 19 KKYTRFEKIGQGASGTVYTAIDIATGQ--EVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDEL 91 (297)
T ss_pred hhceeeeeeccCCCeEEEEEEECCCCC--EEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-----CCEE
Confidence 568889999999999999999654434 89999 46799999999999765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.+++.+. .+++.++..++.|+++||+|||
T Consensus 92 ~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~l~~~L~~LH 132 (297)
T cd06656 92 WVVMEYLAGGSLTDVVTET-----CMDEGQIAAVCRECLQALDFLH 132 (297)
T ss_pred EEeecccCCCCHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998642 3789999999999999999998
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-11 Score=130.28 Aligned_cols=92 Identities=28% Similarity=0.460 Sum_probs=78.7
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEEEEEec
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEF 769 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey 769 (809)
-++|+|.||+||.|+..+ ++..+||| +.++|+|||+++|.|.+ ++++-|.||-
T Consensus 581 vVLGKGTYG~VYA~RD~~--tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~se-----nGf~kIFMEq 653 (1226)
T KOG4279|consen 581 VVLGKGTYGTVYAARDMD--TQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSE-----NGFFKIFMEQ 653 (1226)
T ss_pred EEeecCceeEEEeecccc--ceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCC-----CCeEEEEeec
Confidence 478999999999999544 45589999 67899999999999765 7789999999
Q ss_pred cCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 770 MVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 770 ~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||+|..+++.+-+ +.+-.+.+.-.+.+||++||.|||
T Consensus 654 VPGGSLSsLLrskWG-PlKDNEstm~fYtkQILeGLkYLH 692 (1226)
T KOG4279|consen 654 VPGGSLSSLLRSKWG-PLKDNESTMNFYTKQILEGLKYLH 692 (1226)
T ss_pred CCCCcHHHHHHhccC-CCccchhHHHHHHHHHHHHhhhhh
Confidence 999999999986542 233478889999999999999999
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-11 Score=138.42 Aligned_cols=95 Identities=31% Similarity=0.426 Sum_probs=82.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|.+.+.||+|+||+||+|.....+. .|||| +.++||||+++++++.. .
T Consensus 4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~--~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-----~ 76 (669)
T cd05610 4 EEFVIVKPISRGAFGKVYLGRKKNNSK--LYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQS-----A 76 (669)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCc--EEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEE-----C
Confidence 578899999999999999999765434 89999 35689999999988765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.++++.. ..+++..++.|+.||+.||+|||
T Consensus 77 ~~~~lVmEy~~g~~L~~li~~~----~~l~~~~~~~i~~qil~aL~yLH 121 (669)
T cd05610 77 NNVYLVMEYLIGGDVKSLLHIY----GYFDEEMAVKYISEVALALDYLH 121 (669)
T ss_pred CEEEEEEeCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999743 34789999999999999999999
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.6e-11 Score=123.54 Aligned_cols=97 Identities=27% Similarity=0.496 Sum_probs=82.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCc--eeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.+|...+.||+|+||+||+|.....+. ...||+| +.++||||++++++|..
T Consensus 7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------ 80 (279)
T cd05057 7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS------ 80 (279)
T ss_pred HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec------
Confidence 457888999999999999999754322 2368888 56789999999999763
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++||||+++|+|.++++... ..+++..+..++.|+++|++|||
T Consensus 81 ~~~~~v~e~~~~g~L~~~l~~~~---~~~~~~~~~~~~~qi~~~l~~LH 126 (279)
T cd05057 81 SQVQLITQLMPLGCLLDYVRNHK---DNIGSQYLLNWCVQIAKGMSYLE 126 (279)
T ss_pred CceEEEEecCCCCcHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999997542 34899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-11 Score=124.53 Aligned_cols=97 Identities=25% Similarity=0.355 Sum_probs=83.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.+.|+..+.||+|+||.||+|+....+. .||+| +.++||||+++++++.. +..
T Consensus 11 ~~~y~i~~~lg~g~~g~vy~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 83 (292)
T cd06644 11 NEVWEIIGELGDGAFGKVYKAKNKETGA--LAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYW-----DGK 83 (292)
T ss_pred chhhhhhheecCCCCeEEEEEEECCCCc--eEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEe-----CCe
Confidence 3568889999999999999999765444 88988 57899999999998765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|..++.+.. ..+++.++..++.|+++|++|||
T Consensus 84 ~~lv~e~~~~~~l~~~~~~~~---~~l~~~~~~~~~~ql~~~l~~lH 127 (292)
T cd06644 84 LWIMIEFCPGGAVDAIMLELD---RGLTEPQIQVICRQMLEALQYLH 127 (292)
T ss_pred EEEEEecCCCCcHHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998886432 45899999999999999999999
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.2e-11 Score=123.36 Aligned_cols=95 Identities=25% Similarity=0.372 Sum_probs=81.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||.||+|+.+..+. .||+| +.++||||+++++++.. ++
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~ 73 (286)
T cd07847 1 EKYEKLSKIGEGSYGVVFKCRNRETGQ--IVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRR-----KR 73 (286)
T ss_pred CceeeeeeecccCCeEEEEEEECCCCc--EEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEee-----CC
Confidence 368888999999999999999765434 88988 46789999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||++++.+..++... ..++|.++..++.|+++||+|||
T Consensus 74 ~~~~v~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~ql~~~l~~LH 117 (286)
T cd07847 74 KLHLVFEYCDHTVLNELEKNP----RGVPEHLIKKIIWQTLQAVNFCH 117 (286)
T ss_pred EEEEEEeccCccHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998887532 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.3e-11 Score=128.93 Aligned_cols=95 Identities=28% Similarity=0.419 Sum_probs=81.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
...|...+.||+|+||.||+|..... ++.||+| +.++|||||++++++.. +...++|||
T Consensus 91 ~~~y~~~~~lg~G~~g~V~~~~d~~~--~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~~~lv~e 163 (391)
T PHA03212 91 KAGFSILETFTPGAEGFAFACIDNKT--CEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTY-----NKFTCLILP 163 (391)
T ss_pred cCCcEEEEEEcCCCCeEEEEEEECCC--CCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEE-----CCeeEEEEe
Confidence 35699999999999999999996544 4489999 57899999999998765 678899999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+. |+|.+++..+ ..+++.+++.|+.||++||+|||
T Consensus 164 ~~~-~~L~~~l~~~----~~l~~~~~~~i~~qi~~aL~ylH 199 (391)
T PHA03212 164 RYK-TDLYCYLAAK----RNIAICDILAIERSVLRAIQYLH 199 (391)
T ss_pred cCC-CCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 995 7899888643 34889999999999999999998
|
|
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-11 Score=123.96 Aligned_cols=97 Identities=25% Similarity=0.462 Sum_probs=81.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCc--eeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|++...+. ...||+| +.++||||++++++|..
T Consensus 7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~------ 80 (279)
T cd05109 7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT------ 80 (279)
T ss_pred hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC------
Confidence 468888999999999999998654332 2358999 45789999999999863
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...+++|||+++|+|.++++... ..+++.++..++.|+++||+|||
T Consensus 81 ~~~~l~~~~~~~g~l~~~l~~~~---~~~~~~~~~~~~~qi~~~L~~lH 126 (279)
T cd05109 81 STVQLVTQLMPYGCLLDYVRENK---DRIGSQDLLNWCVQIAKGMSYLE 126 (279)
T ss_pred CCcEEEEEcCCCCCHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999997542 45899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=121.35 Aligned_cols=95 Identities=21% Similarity=0.377 Sum_probs=82.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
++|...+.||+|+||.||+|...+.+. .||+| ++++||||+++++++..
T Consensus 2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~--~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---- 75 (263)
T cd06625 2 TNWRRGKLLGQGAFGRVYLCYDVDTGR--ELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRD---- 75 (263)
T ss_pred CcccccceecCCCceEEEEEEEcCCCc--EEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEcc----
Confidence 568889999999999999998654433 88888 46789999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++... ..+++..+..++.|++.|++|||
T Consensus 76 -~~~~~~v~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~~l~~lH 121 (263)
T cd06625 76 -DETLSIFMEYMPGGSVKDQLKAY----GALTETVTRKYTRQILEGVEYLH 121 (263)
T ss_pred -CCeEEEEEEECCCCcHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998743 34789999999999999999998
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-11 Score=121.67 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=81.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.+|+..+.||+|+||+||+|...+.+ +.|||| ++++||||+++++++...
T Consensus 2 ~~~~~~~~l~~g~~g~v~~~~~~~~~--~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--- 76 (265)
T cd06652 2 TNWRLGKLLGQGAFGRVYLCYDADTG--RELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDP--- 76 (265)
T ss_pred CcceEeeEEecCCceEEEEEEEcCCC--cEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccC---
Confidence 47888999999999999999966543 389988 467899999999986531
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.....++||||+++|+|.+++... ..+++..+..++.|++.||+|||
T Consensus 77 ~~~~~~~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~l~~~l~~lH 123 (265)
T cd06652 77 MERTLSIFMEHMPGGSIKDQLKSY----GALTENVTRKYTRQILEGVSYLH 123 (265)
T ss_pred CCceEEEEEEecCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 135688999999999999998743 34788899999999999999998
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-11 Score=123.95 Aligned_cols=100 Identities=26% Similarity=0.426 Sum_probs=80.9
Q ss_pred cccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+|...+.||+|+||.||+|+.... .....+|+| +.++||||++++++|.. +
T Consensus 1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~ 75 (290)
T cd05045 1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQ-----D 75 (290)
T ss_pred CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEec-----C
Confidence 467789999999999999985421 122368888 56789999999998765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCC--------------------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKP--------------------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~--------------------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.+++...+ .....+++.++..++.|++.|++|||
T Consensus 76 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH 144 (290)
T cd05045 76 GPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA 144 (290)
T ss_pred CCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999986431 11235889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=120.50 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=82.6
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||.++....+. .+++| ++++|+||+++++++.. ++.
T Consensus 1 ~y~~~~~ig~g~~g~v~~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~ 73 (256)
T cd08221 1 HYIPIRVLGKGAFGEATLYRRTEDDS--LVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMD-----DNT 73 (256)
T ss_pred CceEeeEecccCCceEEEEEEcCCCc--EEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEec-----CCe
Confidence 47888999999999999988655434 78888 46789999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.+++.... ...+++.++..++.|+++|++|||
T Consensus 74 ~~~~~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh 118 (256)
T cd08221 74 LLIEMEYANGGTLYDKIVRQK--GQLFEEEMVLWYLFQIVSAVSYIH 118 (256)
T ss_pred EEEEEEecCCCcHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997542 345899999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.1e-11 Score=124.91 Aligned_cols=101 Identities=24% Similarity=0.465 Sum_probs=82.2
Q ss_pred ccccccceeccCCceeEEEEEECC--------------CCceeEEEEe---------------------cCCCCcceeeE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH--------------DDHETLVAVK---------------------RSIRHRNLVKI 748 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~--------------~~~~~~vavK---------------------~~l~H~niv~l 748 (809)
++|+..+.||+|+||.||++...+ .+....||+| +.++|+||+++
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~ 84 (296)
T cd05095 5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL 84 (296)
T ss_pred hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence 468889999999999999986432 1123468888 46799999999
Q ss_pred eeeeeccccCCCceEEEEEeccCCCChhhhhcCCCC-------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPE-------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 749 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++++.. ++..++||||+++|+|.+++..... ....+++.++..++.|++.|++|||
T Consensus 85 ~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH 147 (296)
T cd05095 85 LAVCIT-----SDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS 147 (296)
T ss_pred EEEEec-----CCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 999765 6778999999999999999976431 1234788999999999999999998
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=124.37 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=82.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||.||++.....+ +.||+| +.++||||+++++++.. +
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~--~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~ 73 (305)
T cd05609 1 EDFETIKLISNGAYGAVYLVRHKETR--QRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFET-----K 73 (305)
T ss_pred CCceEeeEeecCCCeeEEEEEECCCC--cEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEec-----C
Confidence 36888899999999999999966543 489998 46789999999998765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.++++.. ..+++..+..++.|+++||+|||
T Consensus 74 ~~~~lv~e~~~g~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH 118 (305)
T cd05609 74 RHLCMVMEYVEGGDCATLLKNI----GALPVDMARMYFAETVLALEYLH 118 (305)
T ss_pred CEEEEEEecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999743 35889999999999999999998
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=123.11 Aligned_cols=100 Identities=28% Similarity=0.490 Sum_probs=80.6
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.|+..+.||+|+||+||+|+..+.+. .||+| +.++||||+++++++.......
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~ 78 (288)
T cd07863 1 QYEPVAEIGVGAYGTVYKARDPHSGH--FVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDR 78 (288)
T ss_pred CceEeeEEeecCCeEEEEEEECCCCc--EEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCC
Confidence 37788999999999999999765444 89999 1347999999999876532333
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++||||++ ++|.++++... ...+++.++..++.|++.||+|||
T Consensus 79 ~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH 125 (288)
T cd07863 79 ETKVTLVFEHVD-QDLRTYLDKVP--PPGLPAETIKDLMRQFLRGLDFLH 125 (288)
T ss_pred CceEEEEEcccc-cCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999998 58998887542 234899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-11 Score=123.90 Aligned_cols=101 Identities=28% Similarity=0.566 Sum_probs=83.6
Q ss_pred ccccccceeccCCceeEEEEEECCCC---ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDD---HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~---~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
++|+..+.||+|+||.||+|...... ....||+| +.++||||+++++++..
T Consensus 5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~----- 79 (283)
T cd05048 5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTK----- 79 (283)
T ss_pred HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcC-----
Confidence 46788899999999999999875432 23478998 46789999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..+++|||+++|+|.+++..... ....+++.++..++.|++.||+|||
T Consensus 80 ~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH 141 (283)
T cd05048 80 EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS 141 (283)
T ss_pred CCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999975421 1145889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9e-11 Score=130.37 Aligned_cols=95 Identities=25% Similarity=0.379 Sum_probs=82.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------cCCCCcceeeEeeeeeccccCCCceEEEEEec
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEF 769 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey 769 (809)
..|...+.||+|+||.||+|+....+. .|||| ++++|+|||++++++.. ++..++||||
T Consensus 169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~--~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~-----~~~~~lv~e~ 241 (461)
T PHA03211 169 LGFAIHRALTPGSEGCVFESSHPDYPQ--RVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVV-----GGLTCLVLPK 241 (461)
T ss_pred CCeEEEEEEccCCCeEEEEEEECCCCC--EEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEE-----CCEEEEEEEc
Confidence 468889999999999999999766544 89999 57899999999999765 6788999999
Q ss_pred cCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 770 MVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 770 ~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+. |+|.+++..+. ..++|.++..|+.|+++||+|||
T Consensus 242 ~~-~~L~~~l~~~~---~~l~~~~~~~i~~qi~~aL~yLH 277 (461)
T PHA03211 242 YR-SDLYTYLGARL---RPLGLAQVTAVARQLLSAIDYIH 277 (461)
T ss_pred cC-CCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 95 79998886432 35899999999999999999999
|
|
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-11 Score=121.96 Aligned_cols=89 Identities=27% Similarity=0.478 Sum_probs=76.2
Q ss_pred eeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 711 LIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 711 ~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
+||+|+||+||+|.++....+..||+| +.++||||+++++++. ++..++|||
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~------~~~~~lv~e 75 (257)
T cd05116 2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE------AESWMLVME 75 (257)
T ss_pred cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc------CCCcEEEEe
Confidence 689999999999987554455689999 4678999999999864 346789999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.+++... ..++++.+.+++.|++.|++|||
T Consensus 76 ~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~al~~lH 112 (257)
T cd05116 76 LAELGPLNKFLQKN----KHVTEKNITELVHQVSMGMKYLE 112 (257)
T ss_pred cCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999743 35889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-11 Score=109.96 Aligned_cols=94 Identities=22% Similarity=0.427 Sum_probs=78.7
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..++||+|.||+||||+-.+ +...||+| +.++|+|||+++++... ++.
T Consensus 3 ~ydkmekigegtygtvfkarn~~--t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhs-----dkk 75 (292)
T KOG0662|consen 3 KYDKMEKIGEGTYGTVFKARNRE--THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-----DKK 75 (292)
T ss_pred chHHHHhhcCCcceeeEecccCC--ccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhcc-----Cce
Confidence 46677899999999999999544 44489999 67899999999998554 788
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+-+|+|||.. +|..+.... .+.++.+.+..++.|+.+|+.|+|
T Consensus 76 ltlvfe~cdq-dlkkyfdsl---ng~~d~~~~rsfmlqllrgl~fch 118 (292)
T KOG0662|consen 76 LTLVFEFCDQ-DLKKYFDSL---NGDLDPEIVRSFMLQLLRGLGFCH 118 (292)
T ss_pred eEEeHHHhhH-HHHHHHHhc---CCcCCHHHHHHHHHHHHhhhhhhh
Confidence 9999999965 787776543 355888999999999999999998
|
|
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-10 Score=121.53 Aligned_cols=93 Identities=26% Similarity=0.510 Sum_probs=80.0
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeeccccC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
+|+..+.||+|+||+||+|....+ +.+||| +.++|+||+++++++..
T Consensus 1 ~~~~~~~ig~g~~~~v~~~~~~~~---~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---- 73 (265)
T cd06631 1 EWTKGEVLGKGAYGTVYCGLTNQG---QLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLD---- 73 (265)
T ss_pred CccccceEeccCCeEEEEEEEcCC---CeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeec----
Confidence 367788999999999999985433 378888 45789999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++||||+++|+|.+++.+. ..++++.+..++.|++.||+|||
T Consensus 74 -~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 119 (265)
T cd06631 74 -DNTISIFMEFVPGGSISSILNRF----GPLPEPVFCKYTKQILDGVAYLH 119 (265)
T ss_pred -CCeEEEEEecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999753 34789999999999999999998
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-11 Score=116.95 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=88.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+.|.+.+.+|+|||+.||.++--. +++.||+| ++++||||+++++++....-+...+.
T Consensus 21 ~Ryri~~~LgeGGfsfv~LV~~~s--~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~ 98 (302)
T KOG2345|consen 21 KRYRIQRLLGEGGFSFVDLVKGLS--TGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEA 98 (302)
T ss_pred ceEEEeeeecCCCceeeeeecccC--cccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeE
Confidence 468889999999999999998333 34589999 68899999999999866333345669
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||+++|...|+|.+.+......+..+++.+.+.|+.||++||++||
T Consensus 99 yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH 144 (302)
T KOG2345|consen 99 YLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALH 144 (302)
T ss_pred EEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999877655667999999999999999999999
|
|
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.2e-11 Score=122.85 Aligned_cols=94 Identities=21% Similarity=0.368 Sum_probs=80.9
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeeccccC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
+|+..+.||+|+||.||+|.....+. .||+| +.++|+||+++++++..
T Consensus 1 ~~~~~~~lg~g~~~~v~~~~~~~~~~--~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---- 74 (268)
T cd06630 1 EWLKGQQLGTGAFSSCYQARDVKTGT--LMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCE---- 74 (268)
T ss_pred CccccceecCcCceEEEEEEEcCCCc--EEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceecc----
Confidence 47778999999999999998654433 88888 35789999999999764
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++.+. ..+++..+..++.|++.||+|||
T Consensus 75 -~~~~~~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~ql~~al~~LH 120 (268)
T cd06630 75 -DSHFNLFVEWMAGGSVSHLLSKY----GAFKEAVIINYTEQLLRGLSYLH 120 (268)
T ss_pred -CCeEEEEEeccCCCcHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999743 35889999999999999999998
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.9e-11 Score=122.26 Aligned_cols=99 Identities=27% Similarity=0.439 Sum_probs=82.2
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------------cCCCCcceeeEeeeee
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------------~~l~H~niv~l~~~~~ 753 (809)
+|+..+.||+|+||.||+|....+ .++.+|+| +.++||||+++++++.
T Consensus 1 ~y~~~~~ig~G~~~~v~~~~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~ 79 (269)
T cd08528 1 EYAVLEHLGSGAFGCVYKVRKKNN-GQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFL 79 (269)
T ss_pred CchhhhhhcCCCCceEEEEEEcCC-CCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEc
Confidence 477789999999999999997652 23478887 1378999999999976
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. ++..++||||+++++|.+++.........+++.++..++.|++.||+|||
T Consensus 80 ~-----~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh 130 (269)
T cd08528 80 E-----NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLH 130 (269)
T ss_pred c-----CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5 77899999999999999988542223356899999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.1e-11 Score=126.06 Aligned_cols=103 Identities=26% Similarity=0.492 Sum_probs=82.8
Q ss_pred hcccccccceeccCCceeEEEEEECC-----CCceeEEEEe---------------------cCC-CCcceeeEeeeeec
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNH-----DDHETLVAVK---------------------RSI-RHRNLVKIITSCAS 754 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~-----~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~ 754 (809)
..++|...+.||+|+||.||+|+..+ ......||+| +.+ +||||++++++|..
T Consensus 10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 89 (314)
T cd05099 10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ 89 (314)
T ss_pred cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc
Confidence 34568889999999999999997532 1123468888 234 69999999999765
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++.++. ....++|.++.+++.|++.||+|||
T Consensus 90 -----~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH 151 (314)
T cd05099 90 -----EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE 151 (314)
T ss_pred -----CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999975421 1245899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=120.05 Aligned_cols=96 Identities=23% Similarity=0.256 Sum_probs=82.5
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||++....++. .||+| ++++||||+++++++.. .+.
T Consensus 1 ~y~~~~~lg~g~~g~~~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~ 73 (256)
T cd08218 1 KYVKVKKIGEGSFGKAILVKSKEDGK--QYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEE-----NGN 73 (256)
T ss_pred CceEEEEeccCCceEEEEEEEcCCCC--EEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecC-----CCe
Confidence 47788999999999999999765544 89998 57889999999998654 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.++++... ...+++.++..++.|++.|++|||
T Consensus 74 ~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh 118 (256)
T cd08218 74 LYIVMDYCEGGDLYKKINAQR--GVLFPEDQILDWFVQICLALKHVH 118 (256)
T ss_pred EEEEEecCCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987542 235789999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=9e-11 Score=123.33 Aligned_cols=99 Identities=34% Similarity=0.504 Sum_probs=81.9
Q ss_pred cccccceeccCCceeEEEEEECC--CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNH--DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~--~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.|+..+.||+|+||.||++++.. ...+..||+| +.++||||+++++++.. .++.
T Consensus 5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~ 81 (284)
T cd05079 5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE---DGGN 81 (284)
T ss_pred hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEec---CCCC
Confidence 46778999999999999998642 2234589999 56899999999998764 1245
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.+++.+.. ..++|.++..++.|++.||+|||
T Consensus 82 ~~~lv~e~~~g~~L~~~l~~~~---~~~~~~~~~~i~~~i~~aL~~lH 126 (284)
T cd05079 82 GIKLIMEFLPSGSLKEYLPRNK---NKINLKQQLKYAVQICKGMDYLG 126 (284)
T ss_pred ceEEEEEccCCCCHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999996432 35899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-11 Score=125.01 Aligned_cols=93 Identities=30% Similarity=0.418 Sum_probs=80.4
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.|+..+.||+|+||.||+|.....+ +.||+| ++++||||+++++++.. +...
T Consensus 5 ~y~~~~~l~~g~~~~vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 77 (277)
T cd06642 5 LFTKLERIGKGSFGEVYKGIDNRTK--EVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLK-----GTKL 77 (277)
T ss_pred HHHHHHHhcCCCCeeEEEEEEcCCC--eEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhccccc-----CCce
Confidence 3666788999999999999865543 489999 57899999999998765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+||||+++|+|.+++.. ..+++..+..++.|+++|++|||
T Consensus 78 ~lv~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 118 (277)
T cd06642 78 WIIMEYLGGGSALDLLKP-----GPLEETYIATILREILKGLDYLH 118 (277)
T ss_pred EEEEEccCCCcHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999863 34889999999999999999998
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-11 Score=129.34 Aligned_cols=104 Identities=26% Similarity=0.394 Sum_probs=83.2
Q ss_pred hcccccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCC-CCcceeeEeeeeeccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSI-RHRNLVKIITSCASVD 756 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~ 756 (809)
+.+.|++.+.||+|+||.||+|...+. .+++.||+| +++ +|+||++++++|..
T Consensus 5 ~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~-- 82 (337)
T cd05054 5 PRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTK-- 82 (337)
T ss_pred CHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEec--
Confidence 345688899999999999999975332 234589999 345 79999999998764
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCC---------------------------------------------------
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEA--------------------------------------------------- 785 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~--------------------------------------------------- 785 (809)
.+...+++|||+++|+|.++++.....
T Consensus 83 --~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (337)
T cd05054 83 --PGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDE 160 (337)
T ss_pred --CCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccch
Confidence 256789999999999999998643210
Q ss_pred ------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 786 ------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 786 ------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++|..+..++.||+.||+|||
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH 190 (337)
T cd05054 161 EGDELYKEPLTLEDLISYSFQVARGMEFLA 190 (337)
T ss_pred hhhHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 125899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-11 Score=133.47 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=85.5
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
...++|...+.||+|+||+||+|+....+. .|||| ..++|+||+++++.+......
T Consensus 29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~--~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~ 106 (496)
T PTZ00283 29 EQAKKYWISRVLGSGATGTVLCAKRVSDGE--PFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPR 106 (496)
T ss_pred ccCCCEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceeccccc
Confidence 345689999999999999999999665444 89999 356899999998876432110
Q ss_pred ---CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 ---GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ---~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....+++||||+++|+|.++++.+......+++..+..++.|++.||+|||
T Consensus 107 ~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH 160 (496)
T PTZ00283 107 NPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVH 160 (496)
T ss_pred CcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 112478999999999999999765444467899999999999999999999
|
|
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.8e-11 Score=121.03 Aligned_cols=93 Identities=29% Similarity=0.437 Sum_probs=80.3
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
|+..+.||+|+||+||+|.....+. .|++| +.++|+||+++++++.. +
T Consensus 2 ~~~~~~ig~g~~~~vy~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~ 74 (258)
T cd06632 2 WRKGELLGSGSFGSVYEGLNLDDGD--FFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTERE-----E 74 (258)
T ss_pred ccccceeeecCCceEEEEEEcCCCc--EEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEec-----C
Confidence 6677899999999999999764434 78888 45789999999998765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++++|.+++++. ..+++..+..++.|+++|++|||
T Consensus 75 ~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH 119 (258)
T cd06632 75 DNLYIFLELVPGGSLAKLLKKY----GSFPEPVIRLYTRQILLGLEYLH 119 (258)
T ss_pred CeEEEEEEecCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999743 34889999999999999999998
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.6e-11 Score=122.84 Aligned_cols=103 Identities=28% Similarity=0.546 Sum_probs=85.1
Q ss_pred cccccccceeccCCceeEEEEEECCCC--ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDD--HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~--~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||.||+|...+.. .+..||+| ++++||||+++++++.. +
T Consensus 5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~----~ 80 (280)
T cd05043 5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIE----D 80 (280)
T ss_pred hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec----C
Confidence 457888899999999999999976521 24578888 46799999999998764 2
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCC----CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEA----PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~----~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...++++||+++|+|.+++...+.. +..+++.++..++.|++.||+|||
T Consensus 81 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH 134 (280)
T cd05043 81 GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH 134 (280)
T ss_pred CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999754322 146899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.7e-11 Score=123.69 Aligned_cols=94 Identities=27% Similarity=0.397 Sum_probs=80.9
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
|+..+.||+|+||.||+|.....+ ..+|+| +.++||||+++++++.. ++..|+
T Consensus 7 ~~i~~~lg~g~~g~v~~~~~~~~~--~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-----~~~~~~ 79 (282)
T cd06643 7 WEIIGELGDGAFGKVYKAQNKETG--VLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-----ENNLWI 79 (282)
T ss_pred HHHHhhcccCCCeEEEEEEECCCC--eEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEee-----CCEEEE
Confidence 567788999999999999976543 478888 46899999999999765 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|..++.+. ...++|..+..++.|+++||+|||
T Consensus 80 v~e~~~~~~l~~~~~~~---~~~l~~~~~~~~~~qi~~~L~~LH 120 (282)
T cd06643 80 LIEFCAGGAVDAVMLEL---ERPLTEPQIRVVCKQTLEALNYLH 120 (282)
T ss_pred EEEecCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988643 245899999999999999999998
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-12 Score=130.46 Aligned_cols=95 Identities=28% Similarity=0.384 Sum_probs=81.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
..|+..+.||+|+||.||||.. ..+++.||+| ..++|+||.++||.+.. +..
T Consensus 13 ~~~~~~~~IgrGsfG~Vyk~~d--~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~-----g~~ 85 (467)
T KOG0201|consen 13 LLYTKLELIGRGSFGEVYKAID--NKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLK-----GTK 85 (467)
T ss_pred cccccchhccccccceeeeeee--ccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheee-----ccc
Confidence 3477779999999999999994 4456699999 56789999999999776 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|++||||.+|++.+.++.. ..+++.++.-|.+++..|+.|||
T Consensus 86 LwiiMey~~gGsv~~lL~~~----~~~~E~~i~~ilre~l~~l~ylH 128 (467)
T KOG0201|consen 86 LWIIMEYCGGGSVLDLLKSG----NILDEFEIAVILREVLKGLDYLH 128 (467)
T ss_pred HHHHHHHhcCcchhhhhccC----CCCccceeeeehHHHHHHhhhhh
Confidence 99999999999999999743 33478888889999999999999
|
|
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=122.37 Aligned_cols=111 Identities=24% Similarity=0.317 Sum_probs=88.9
Q ss_pred cHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCC-CCcceeeEeeeeec
Q 040849 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSI-RHRNLVKIITSCAS 754 (809)
Q Consensus 695 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l-~H~niv~l~~~~~~ 754 (809)
+..+...+.+.|+..+.+|+|+||.||+|.....+. .||+| +++ +||||+++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~--~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~ 84 (282)
T cd06636 7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQ--LAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIK 84 (282)
T ss_pred hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCc--EEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence 445555667789999999999999999999765444 89998 233 79999999998754
Q ss_pred ccc-CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDF-QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~-~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
... ...+..++||||+++|+|.+++...+ ...+++..+..++.|++.|++|||
T Consensus 85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH 138 (282)
T cd06636 85 KSPPGHDDQLWLVMEFCGAGSVTDLVKNTK--GNALKEDWIAYICREILRGLAHLH 138 (282)
T ss_pred ccccCCCCEEEEEEEeCCCCcHHHHHHHcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 211 22467899999999999999997543 245788899999999999999998
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.9e-11 Score=123.10 Aligned_cols=96 Identities=30% Similarity=0.522 Sum_probs=80.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.+.|+..+.||+|+||.||+|+..++ . .||+| +.++||||+++++++. ++..
T Consensus 5 ~~~~~~~~~lg~g~~~~v~~~~~~~~-~--~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~------~~~~ 75 (262)
T cd05071 5 RESLRLEVKLGQGCFGEVWMGTWNGT-T--RVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS------EEPI 75 (262)
T ss_pred hHHeeEeeecCCCCCCcEEEEEecCC-c--eEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEEC------CCCc
Confidence 35688899999999999999986543 3 68998 4678999999998753 3457
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.++++... ...++|+++..++.|+++||+|||
T Consensus 76 ~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~aL~~lH 119 (262)
T cd05071 76 YIVTEYMSKGSLLDFLKGEM--GKYLRLPQLVDMAAQIASGMAYVE 119 (262)
T ss_pred EEEEEcCCCCcHHHHHhhcc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997542 245789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=121.78 Aligned_cols=94 Identities=23% Similarity=0.405 Sum_probs=80.4
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe------------------------------cCCCCcceeeEeeeeec
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------------RSIRHRNLVKIITSCAS 754 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------------~~l~H~niv~l~~~~~~ 754 (809)
+|...+.||+|+||.||+|.....+. .||+| +.++||||+++++++..
T Consensus 2 ~~~~~~~lg~g~~~~vy~~~~~~~~~--~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~ 79 (272)
T cd06629 2 KWVKGELIGKGTYGRVYLALNVTTGE--MMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETT 79 (272)
T ss_pred ceeecceecccCceEEEEEeecCCCc--eeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEecc
Confidence 36677899999999999998654433 78888 34679999999999765
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++||||+++|+|.+++++. ..+++..+..++.|++.||.|||
T Consensus 80 -----~~~~~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~~l~~lH 125 (272)
T cd06629 80 -----EEYLSIFLEYVPGGSIGSCLRTY----GRFEEQLVRFFTEQVLEGLAYLH 125 (272)
T ss_pred -----CCceEEEEecCCCCcHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999754 35899999999999999999999
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-11 Score=124.18 Aligned_cols=94 Identities=24% Similarity=0.421 Sum_probs=80.9
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
+|+..+.||+|+||.||+|.....+. .|||| +.++|+||+++++++..
T Consensus 1 ~y~~~~~lg~g~~~~vy~~~~~~~~~--~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~----- 73 (298)
T cd07841 1 RYEKGKKLGEGTYAVVYKARDKETGR--IVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGH----- 73 (298)
T ss_pred CceeeeeeeeccccEEEEEEECCCCc--EEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeec-----
Confidence 36778899999999999999765434 89998 35789999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+ +|+|.++++... ..+++.++..++.||++||+|||
T Consensus 74 ~~~~~lv~e~~-~~~L~~~i~~~~---~~~~~~~~~~~~~qi~~al~~lH 119 (298)
T cd07841 74 KSNINLVFEFM-ETDLEKVIKDKS---IVLTPADIKSYMLMTLRGLEYLH 119 (298)
T ss_pred CCEEEEEEccc-CCCHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999 999999997542 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.4e-11 Score=121.48 Aligned_cols=96 Identities=25% Similarity=0.355 Sum_probs=82.8
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||+|.....+. .||+| +.++|+||+++++++.. +..
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~-----~~~ 73 (257)
T cd08225 1 RYEIIKKIGEGSFGKIYLAKAKSDSE--HCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQE-----NGR 73 (257)
T ss_pred CceEEEEecCCCcceEEEEEEcCCCc--eEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheecc-----CCe
Confidence 47788999999999999999776544 78988 46789999999998765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++++|.+++.+.. ...++|..+..++.|+++||+|||
T Consensus 74 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh 118 (257)
T cd08225 74 LFIVMEYCDGGDLMKRINRQR--GVLFSEDQILSWFVQISLGLKHIH 118 (257)
T ss_pred EEEEEecCCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997542 235799999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-11 Score=123.03 Aligned_cols=94 Identities=28% Similarity=0.373 Sum_probs=81.9
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+|+..+.||.|+||.||+|.....+. .||+| +.++||||+++++++.. ++
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 73 (258)
T cd05578 1 HFELLRVIGKGAFGKVCIVQKRDTKK--MFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQD-----EE 73 (258)
T ss_pred CceEEEEeccCCCceEEEEEEccCCc--EEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcC-----CC
Confidence 47788999999999999999764434 89998 47899999999998654 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++++|.+++... ..+++.++..++.|+++||+|||
T Consensus 74 ~~~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~~i~~~l~~lh 117 (258)
T cd05578 74 NMYLVVDLLLGGDLRYHLSQK----VKFSEEQVKFWICEIVLALEYLH 117 (258)
T ss_pred eEEEEEeCCCCCCHHHHHHhc----CCcCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999743 45889999999999999999998
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=122.50 Aligned_cols=95 Identities=22% Similarity=0.421 Sum_probs=81.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||+|+||.||+|..+..+. .|||| +.++||||+++++++.. ++.
T Consensus 5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~ 77 (291)
T cd07844 5 ETYKKLDKLGEGSYATVYKGRSKLTGQ--LVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHT-----KKT 77 (291)
T ss_pred cceeEEEEEeecCCeEEEEEEEcCCCc--EEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEec-----CCe
Confidence 578889999999999999999765444 89999 36789999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||++ |+|.+++.+.. ..+++..+..++.|+++||+|||
T Consensus 78 ~~lv~e~~~-~~L~~~~~~~~---~~~~~~~~~~~~~ql~~al~~lH 120 (291)
T cd07844 78 LTLVFEYLD-TDLKQYMDDCG---GGLSMHNVRLFLFQLLRGLAYCH 120 (291)
T ss_pred EEEEEecCC-CCHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999998 59999987542 35889999999999999999998
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.9e-11 Score=125.87 Aligned_cols=87 Identities=25% Similarity=0.316 Sum_probs=74.5
Q ss_pred eccCCceeEEEEEECCCCceeEEEEe------------------------cCC--CCcceeeEeeeeeccccCCCceEEE
Q 040849 712 IGAGSFGSVYKGILNHDDHETLVAVK------------------------RSI--RHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 712 ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l--~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
||+|+||+||+|+....+. .|||| ... +||||+++++++.. +...|+
T Consensus 1 lG~G~~g~Vy~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~-----~~~~~l 73 (330)
T cd05586 1 IGKGTFGQVYQVRKKDTRR--IYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQT-----DSDLYL 73 (330)
T ss_pred CCCCCceEEEEEEECCCCC--EEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEec-----CCeEEE
Confidence 6999999999999665444 89999 112 79999999998655 778999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.+++.+. ..+++.++..++.||++||+|||
T Consensus 74 v~e~~~~g~L~~~l~~~----~~~~~~~~~~~~~qil~al~~LH 113 (330)
T cd05586 74 VTDYMSGGELFWHLQKE----GRFSEDRAKFYIAELVLALEHLH 113 (330)
T ss_pred EEcCCCCChHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998743 45899999999999999999998
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=120.52 Aligned_cols=97 Identities=27% Similarity=0.392 Sum_probs=84.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.++|+..+.||+|+||.||+|.....+. .||+| ++++||||+++++++.. ++..|
T Consensus 2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~--~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~ 74 (256)
T cd06612 2 EEVFDILEKLGEGSYGSVYKAIHKETGQ--VVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFK-----NTDLW 74 (256)
T ss_pred cccchhhhhhcCCCCeEEEEEEEcCCCc--EEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeec-----CCcEE
Confidence 3578899999999999999999776434 89998 56799999999999765 67899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|||+++++|.++++..+ ..++|.++..++.|+++|++|||
T Consensus 75 l~~e~~~~~~L~~~l~~~~---~~l~~~~~~~~~~~l~~~l~~lh 116 (256)
T cd06612 75 IVMEYCGAGSVSDIMKITN---KTLTEEEIAAILYQTLKGLEYLH 116 (256)
T ss_pred EEEecCCCCcHHHHHHhCc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997432 45899999999999999999998
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=121.53 Aligned_cols=93 Identities=29% Similarity=0.408 Sum_probs=80.8
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.|+..+.||.|+||.||+|.....+ ..||+| +.++||||+++++++.. +...
T Consensus 5 ~y~~~~~lg~g~~~~vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 77 (277)
T cd06640 5 LFTKLERIGKGSFGEVFKGIDNRTQ--QVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----GTKL 77 (277)
T ss_pred hhhhhhhcccCCCeEEEEEEEccCC--EEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CCEE
Confidence 4677789999999999999965443 389998 46789999999999765 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.+++.. ..+++.++..++.|++.|++|||
T Consensus 78 ~lv~e~~~~~~L~~~i~~-----~~l~~~~~~~~~~~l~~~l~~lh 118 (277)
T cd06640 78 WIIMEYLGGGSALDLLRA-----GPFDEFQIATMLKEILKGLDYLH 118 (277)
T ss_pred EEEEecCCCCcHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999863 24789999999999999999998
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=120.13 Aligned_cols=96 Identities=31% Similarity=0.449 Sum_probs=81.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
++|...+.||+|+||.||+|...+. .||+| +.++|+|++++++++.. +++..++
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~~~----~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----~~~~~~l 77 (256)
T cd05082 6 KELKLLQTIGKGEFGDVMLGDYRGN----KVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLYI 77 (256)
T ss_pred HhCeeeeeecccCCCeEEEEEEcCC----cEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEc----CCCceEE
Confidence 4688889999999999999986532 68888 57899999999998643 2566899
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.++++.+. ...++|.++..++.|++.||+|||
T Consensus 78 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH 119 (256)
T cd05082 78 VTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLE 119 (256)
T ss_pred EEECCCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997543 234889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-11 Score=120.41 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=84.7
Q ss_pred cccccccceeccCCceeEEEEEECCCCcee--EEEEe----------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHET--LVAVK----------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~--~vavK----------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
...|+....||+|.||.||||...+....+ .+|+| ++++|||||.+..++..
T Consensus 23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~---- 98 (438)
T KOG0666|consen 23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLS---- 98 (438)
T ss_pred HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhc----
Confidence 456888899999999999999766554433 78998 68899999999998654
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCC-CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPE-APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~-~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..+|+++||.|. ||.+.|+.++. ..+.++...+..|.-||+.|+.|||
T Consensus 99 ~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH 149 (438)
T KOG0666|consen 99 HDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH 149 (438)
T ss_pred cCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh
Confidence 26789999999986 89999986542 2356888999999999999999999
|
|
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=124.51 Aligned_cols=97 Identities=27% Similarity=0.387 Sum_probs=83.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|...+.+. .||+| +.++||||+++++++.. +
T Consensus 1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~ 73 (316)
T cd05574 1 KHFKKIKLLGKGDVGRVFLVRLKGTGK--LFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQT-----E 73 (316)
T ss_pred CceEEeeeecCCccEEEEEEEEcCCCc--EEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeec-----C
Confidence 368888999999999999999765434 89999 46789999999998754 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++||||+++|+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 74 ~~~~lv~e~~~~~~L~~~~~~~~--~~~l~~~~~~~~~~qi~~~l~~lH 120 (316)
T cd05574 74 TYLCLVMDYCPGGELFRLLQRQP--GKCLSEEVARFYAAEVLLALEYLH 120 (316)
T ss_pred CEEEEEEEecCCCCHHHHHHhCC--CCccCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999987542 356899999999999999999998
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=121.16 Aligned_cols=90 Identities=24% Similarity=0.311 Sum_probs=77.2
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+|+..+.||+|+||.||+|..... ++.||+| ++++||||+++++++.. ++..
T Consensus 2 ~~~~~~~lg~g~~~~v~~~~~~~~--~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~ 74 (279)
T cd06619 2 DIQYQEILGHGNGGTVYKAYHLLT--RRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFV-----ENRI 74 (279)
T ss_pred cchheeeeccCCCeEEEEEEEcCC--CcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEE-----CCEE
Confidence 577789999999999999986544 3489998 45789999999999876 6788
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|..+. .+++..+..++.|++.||+|||
T Consensus 75 ~lv~e~~~~~~l~~~~--------~~~~~~~~~~~~qi~~~l~~lH 112 (279)
T cd06619 75 SICTEFMDGGSLDVYR--------KIPEHVLGRIAVAVVKGLTYLW 112 (279)
T ss_pred EEEEecCCCCChHHhh--------cCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997553 2678899999999999999998
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-11 Score=124.57 Aligned_cols=93 Identities=34% Similarity=0.611 Sum_probs=81.7
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
|+..+.||+|+||+||++.....+. .||+| +.++||||+++++++.. .+..
T Consensus 1 y~~~~~lg~G~~g~v~~~~~~~~~~--~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~ 73 (260)
T PF00069_consen 1 YRLVKKLGSGGFGTVYKAKNKKNGQ--KVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQD-----DNYL 73 (260)
T ss_dssp EEEEEEEEEESSEEEEEEEETTTTE--EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEE-----SSEE
T ss_pred CEEeEEEEeCCCEEEEEEEECCCCe--EEEEEEeccccccccccchhhhhhhccccccccccccccccccc-----cccc
Confidence 5678999999999999999776544 89999 45689999999999765 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.+++.. ...+++.++..++.|+++||+|||
T Consensus 74 ~~v~~~~~~~~L~~~l~~----~~~~~~~~~~~~~~qi~~~L~~Lh 115 (260)
T PF00069_consen 74 YIVMEYCPGGSLQDYLQK----NKPLSEEEILKIAYQILEALAYLH 115 (260)
T ss_dssp EEEEEEETTEBHHHHHHH----HSSBBHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccc----cccccccccccccccccccccccc
Confidence 999999999999999972 245899999999999999999998
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.2e-11 Score=126.74 Aligned_cols=102 Identities=25% Similarity=0.459 Sum_probs=82.5
Q ss_pred cccccccceeccCCceeEEEEEECCCC-----ceeEEEEe---------------------cCC-CCcceeeEeeeeecc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDD-----HETLVAVK---------------------RSI-RHRNLVKIITSCASV 755 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~-----~~~~vavK---------------------~~l-~H~niv~l~~~~~~~ 755 (809)
...|+..+.||+|+||.||+|+..... ....||+| +++ +||||++++++|..
T Consensus 11 ~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~- 89 (334)
T cd05100 11 RTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ- 89 (334)
T ss_pred HhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEcc-
Confidence 345888899999999999999853211 22368888 345 79999999999765
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++..+.. ....++|.++..++.|+++||+|||
T Consensus 90 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH 151 (334)
T cd05100 90 ----DGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA 151 (334)
T ss_pred ----CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999975421 1235889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.9e-11 Score=121.59 Aligned_cols=96 Identities=30% Similarity=0.526 Sum_probs=81.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|+..+.||+|+||.||+|...++ . .||+| ++++|+||+++++++. +...
T Consensus 5 ~~~~~~~~~ig~g~~~~v~~~~~~~~-~--~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~------~~~~ 75 (260)
T cd05070 5 RESLQLIKKLGNGQFGEVWMGTWNGN-T--KVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS------EEPI 75 (260)
T ss_pred hHHhhhhheeccccCceEEEEEecCC-c--eeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC------CCCc
Confidence 34678889999999999999986544 3 58888 5689999999999853 3457
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.++++... ...++++++..++.|++.|++|||
T Consensus 76 ~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~al~~lH 119 (260)
T cd05070 76 YIVTEYMSKGSLLDFLKDGE--GRALKLPNLVDMAAQVAAGMAYIE 119 (260)
T ss_pred EEEEEecCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997542 345899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=122.89 Aligned_cols=94 Identities=28% Similarity=0.390 Sum_probs=81.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
++|...+.||+|+||.||+|.....+. .||+| +.++||||+++++++.. ++..
T Consensus 19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~--~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-----~~~~ 91 (293)
T cd06647 19 KKYTRFEKIGQGASGTVYTAIDVATGQ--EVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLV-----GDEL 91 (293)
T ss_pred hhceeeeEecCCCCeEEEEEEEcCCCC--EEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeee-----CCcE
Confidence 568888999999999999998654433 79998 46789999999999765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+|+||+++|+|.+++.+. .+++.++..++.|++.|++|||
T Consensus 92 ~lv~e~~~~~~L~~~~~~~-----~l~~~~~~~i~~~l~~al~~LH 132 (293)
T cd06647 92 WVVMEYLAGGSLTDVVTET-----CMDEGQIAAVCRECLQALEFLH 132 (293)
T ss_pred EEEEecCCCCcHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999743 3789999999999999999998
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=121.57 Aligned_cols=96 Identities=21% Similarity=0.425 Sum_probs=81.5
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+|+..+.||+|++|.||+|+....+. .|||| +.++||||+++++++.. .+..
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 73 (284)
T cd07836 1 NFKQLEKLGEGTYATVYKGRNRTTGE--IVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHT-----ENKL 73 (284)
T ss_pred CceEeeeeccCCceEEEEEEECCCCe--EEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEee-----CCcE
Confidence 47888999999999999999765444 89998 45789999999999765 6778
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++ +|.+++.... ....+++.++..++.|+++||+|||
T Consensus 74 ~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH 117 (284)
T cd07836 74 MLVFEYMDK-DLKKYMDTHG-VRGALDPNTVKSFTYQLLKGIAFCH 117 (284)
T ss_pred EEEEecCCc-cHHHHHHhcC-CCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999984 8988887543 2346899999999999999999998
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=121.70 Aligned_cols=96 Identities=32% Similarity=0.522 Sum_probs=79.3
Q ss_pred ccccceeccCCceeEEEEEECC--CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNH--DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~--~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|...+.||+|+||+||++.+.. ...++.||+| ++++||||+++++++.. .+...
T Consensus 6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~~~ 82 (283)
T cd05080 6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSE---QGGKG 82 (283)
T ss_pred ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---CCCce
Confidence 3778999999999998876432 2234579999 46899999999998764 22456
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++... .++|.++..++.|+++|++|||
T Consensus 83 ~~lv~e~~~~~~l~~~~~~~-----~l~~~~~~~i~~~l~~~l~~lH 124 (283)
T cd05080 83 LQLIMEYVPLGSLRDYLPKH-----KLNLAQLLLFAQQICEGMAYLH 124 (283)
T ss_pred EEEEecCCCCCCHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999643 4899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=119.70 Aligned_cols=97 Identities=30% Similarity=0.425 Sum_probs=84.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.++|+..+.||+|+||.||+|.....+. .+|+| +.++||||+++++++.. ++.
T Consensus 2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~ 74 (262)
T cd06613 2 QEDYELIQRIGSGTYGDVYKARDIATGE--LVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLR-----RDK 74 (262)
T ss_pred ccceEEEEEecCCCceEEEEeEecCCCC--EEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEe-----CCE
Confidence 3578889999999999999999765444 78888 57899999999998665 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+++|||+++++|.++++... ..+++.++..++.|++.||+|||
T Consensus 75 ~~l~~e~~~~~~l~~~~~~~~---~~l~~~~~~~~~~ql~~~l~~lh 118 (262)
T cd06613 75 LWIVMEYCGGGSLQDIYQVTR---GPLSELQIAYVCRETLKGLAYLH 118 (262)
T ss_pred EEEEEeCCCCCcHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987532 45899999999999999999998
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=119.29 Aligned_cols=97 Identities=20% Similarity=0.331 Sum_probs=81.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.+|+..+.||+|+||.||+|.....+. .||+| +.++||||+++++++.. .
T Consensus 2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~ 76 (266)
T cd06651 2 INWRRGKLLGQGAFGRVYLCYDVDTGR--ELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRD---R 76 (266)
T ss_pred CCccccceecCCCCEEEEEEEEcCCCc--EEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEc---C
Confidence 368889999999999999999655433 78888 46799999999998653 1
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+...+++|||+++++|.+++... ..+++..+..++.|+++||+|||
T Consensus 77 ~~~~~~l~~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~~l~~LH 123 (266)
T cd06651 77 AEKTLTIFMEYMPGGSVKDQLKAY----GALTESVTRKYTRQILEGMSYLH 123 (266)
T ss_pred CCCEEEEEEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 246789999999999999999743 34789999999999999999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=119.48 Aligned_cols=98 Identities=29% Similarity=0.391 Sum_probs=84.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||.|+||+||+|.....+. .+|+| +.++|+||+++++.+.. ++.
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~ 73 (267)
T cd06610 1 DDYELIEVIGVGATAVVYAAICLPNNE--KVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVV-----GDE 73 (267)
T ss_pred CcceeeeeecCCCCeEEEEEEEcCCCc--EEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEee-----CCE
Confidence 468889999999999999999765544 78888 46899999999998765 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+||||+++++|.++++... ....+++..+..++.|++.||+|||
T Consensus 74 ~~iv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ql~~al~~lh 119 (267)
T cd06610 74 LWLVMPYLSGGSLLDIMKSSY-PRGGLDEAIIATVLKEVLKGLEYLH 119 (267)
T ss_pred EEEEEeccCCCcHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997542 1245899999999999999999998
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=118.83 Aligned_cols=89 Identities=34% Similarity=0.578 Sum_probs=76.6
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
++||+|+||.||+|...++ . .||+| +.++||||++++++|.. .+..++|||
T Consensus 1 ~~ig~g~~g~vy~~~~~~~-~--~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~lv~e 72 (250)
T cd05085 1 ELLGKGNFGEVFKGTLKDK-T--PVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQ-----RQPIYIVME 72 (250)
T ss_pred CccCCCCCceEEEEEecCC-c--EEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEec-----CCccEEEEE
Confidence 3689999999999986543 3 78998 46789999999999765 667899999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.+++.... ..++|.++..++.|++.||.|+|
T Consensus 73 ~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH 110 (250)
T cd05085 73 LVPGGDFLSFLRKKK---DELKTKQLVKFALDAAAGMAYLE 110 (250)
T ss_pred CCCCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999987542 34789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-11 Score=129.62 Aligned_cols=97 Identities=27% Similarity=0.407 Sum_probs=81.5
Q ss_pred ccccccceeccCCceeEEEEEECCC-CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++....+.||+|.||.|++|.|... ++-..|||| -+++|||+|+|||+.. +.
T Consensus 110 e~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl------~q 183 (1039)
T KOG0199|consen 110 EQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVL------DQ 183 (1039)
T ss_pred HHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeec------cc
Confidence 3455678999999999999998652 233469999 4789999999999975 36
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yL 808 (809)
.++||+|.++.|+|.+.|++. ....+-......||.|||.||+||
T Consensus 184 p~mMV~ELaplGSLldrLrka--~~~~llv~~Lcdya~QiA~aM~YL 228 (1039)
T KOG0199|consen 184 PAMMVFELAPLGSLLDRLRKA--KKAILLVSRLCDYAMQIAKAMQYL 228 (1039)
T ss_pred hhhHHhhhcccchHHHHHhhc--cccceeHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999972 335688889999999999999998
|
|
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=120.84 Aligned_cols=95 Identities=29% Similarity=0.515 Sum_probs=80.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
+.|.....||+|+||.||+|....+ . .||+| +.++|||++++++++. ++..+
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~-~--~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~~~~ 76 (260)
T cd05069 6 ESLRLDVKLGQGCFGEVWMGTWNGT-T--KVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS------EEPIY 76 (260)
T ss_pred HHeeeeeeecCcCCCeEEEEEEcCC-c--eEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEc------CCCcE
Confidence 4588889999999999999986554 2 58888 5688999999998853 34579
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.++++... ...++|..+..++.|++.||+|||
T Consensus 77 ~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~al~~lH 119 (260)
T cd05069 77 IVTEFMGKGSLLDFLKEGD--GKYLKLPQLVDMAAQIADGMAYIE 119 (260)
T ss_pred EEEEcCCCCCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997542 345789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=119.27 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=76.6
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.||+|+||.||+|.....+. .|||| ...+|+||+++++++.. ++..|+
T Consensus 2 ~~l~~g~~~~v~~a~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-----~~~~~l 74 (260)
T cd05611 2 KPISKGAFGSVYLAKKRSTGD--YFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQS-----KDYLYL 74 (260)
T ss_pred ccCCcCCCeeEEEEEecCCCC--eEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEc-----CCeEEE
Confidence 568999999999999655434 89999 24579999999999765 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.++++.. ..+++..+..++.|+++||+|||
T Consensus 75 v~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~lH 114 (260)
T cd05611 75 VMEYLNGGDCASLIKTL----GGLPEDWAKQYIAEVVLGVEDLH 114 (260)
T ss_pred EEeccCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999743 35789999999999999999998
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=119.28 Aligned_cols=90 Identities=32% Similarity=0.493 Sum_probs=76.4
Q ss_pred ceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
++||+|+||.||+|.+.... ....||+| +.++|||||++++++. .+..++||
T Consensus 1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------~~~~~~v~ 74 (257)
T cd05060 1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK------GEPLMLVM 74 (257)
T ss_pred CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc------CCceEEEE
Confidence 46899999999999875543 33579998 4678999999999864 34579999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||+++|+|.+++++. ..+++..+..++.|+++|++|||
T Consensus 75 e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lh 112 (257)
T cd05060 75 ELAPLGPLLKYLKKR----REIPVSDLKELAHQVAMGMAYLE 112 (257)
T ss_pred EeCCCCcHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999754 25899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=127.05 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=79.5
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||+||+|.....+. .|||| +.++||||+++++++..........
T Consensus 1 ~~~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 78 (372)
T cd07853 1 DVEPDRPIGYGAFGVVWSVTDPRDGK--RVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEE 78 (372)
T ss_pred CCcccceeeeCCCEEEEEEEECCCCC--EEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccce
Confidence 47788999999999999999654434 89999 4578999999999976522111236
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+||||++ ++|.+++... ..+++.++..++.||++||+|||
T Consensus 79 ~~lv~e~~~-~~l~~~~~~~----~~l~~~~~~~~~~qi~~aL~~LH 120 (372)
T cd07853 79 IYVVTELMQ-SDLHKIIVSP----QPLSSDHVKVFLYQILRGLKYLH 120 (372)
T ss_pred EEEEeeccc-cCHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999997 6888888643 45899999999999999999999
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=118.99 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=82.5
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||++.....+. .+|+| +.++||||+++++.+.. ++.
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~ 73 (256)
T cd08220 1 KYEKIRVVGRGAFGIVHLCRRKADQK--LVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLE-----DKA 73 (256)
T ss_pred CceEEEEecccCceEEEEEEEcCCCc--EEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEec-----CCE
Confidence 47788999999999999999765444 89998 46789999999998654 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.++++.+. ...+++..+..++.|+++|++|||
T Consensus 74 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lh 118 (256)
T cd08220 74 LMIVMEYAPGGTLAEYIQKRC--NSLLDEDTILHFFVQILLALHHVH 118 (256)
T ss_pred EEEEEecCCCCCHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997542 345899999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-11 Score=122.80 Aligned_cols=95 Identities=34% Similarity=0.530 Sum_probs=77.7
Q ss_pred ceeccCCceeEEEEEECCCC----ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 710 NLIGAGSFGSVYKGILNHDD----HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~----~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
+.||+|+||.||+|+..+.. ..+.||+| +.++||||++++++|.. .+..+
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 75 (269)
T cd05044 1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLL-----NEPQY 75 (269)
T ss_pred CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecC-----CCCeE
Confidence 36899999999999875421 22468888 56799999999999765 66799
Q ss_pred EEEeccCCCChhhhhcCCCC---CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPE---APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~---~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.++++.... ....++|.++..++.|+++|++|||
T Consensus 76 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH 123 (269)
T cd05044 76 IIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE 123 (269)
T ss_pred EEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975321 2244789999999999999999999
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=120.17 Aligned_cols=97 Identities=27% Similarity=0.515 Sum_probs=82.1
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
..++|...+.||+|+||.||+|...++ . .+|+| +.++|+||+++++++.. ..
T Consensus 4 ~~~~~~~~~~lg~g~~~~vy~~~~~~~-~--~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~------~~ 74 (260)
T cd05073 4 PRESLKLEKKLGAGQFGEVWMATYNKH-T--KVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK------EP 74 (260)
T ss_pred cccceeEEeEecCccceEEEEEEecCC-c--cEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC------CC
Confidence 346788999999999999999986543 3 58888 57899999999988542 56
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+++|||+++|+|.++++... ...+++.++..++.|++.|++|||
T Consensus 75 ~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~aL~~lH 119 (260)
T cd05073 75 IYIITEFMAKGSLLDFLKSDE--GSKQPLPKLIDFSAQIAEGMAFIE 119 (260)
T ss_pred eEEEEEeCCCCcHHHHHHhCC--ccccCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997542 345889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=122.28 Aligned_cols=102 Identities=24% Similarity=0.429 Sum_probs=84.0
Q ss_pred cccccccceeccCCceeEEEEEECCCC--------------ceeEEEEe---------------------cCCCCcceee
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDD--------------HETLVAVK---------------------RSIRHRNLVK 747 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~--------------~~~~vavK---------------------~~l~H~niv~ 747 (809)
..+|+..+.||+|+||.||+|+..+.+ ....||+| +.++||||++
T Consensus 4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~ 83 (296)
T cd05051 4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR 83 (296)
T ss_pred hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence 356888999999999999999865422 12358888 5679999999
Q ss_pred EeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCC-------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPE-------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 748 l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++++.. ++..++||||+++|+|.+++..... ....+++.++..++.|++.||+|||
T Consensus 84 ~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH 147 (296)
T cd05051 84 LLGVCTV-----DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE 147 (296)
T ss_pred EEEEEec-----CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999765 6789999999999999999975431 1235899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-11 Score=121.24 Aligned_cols=94 Identities=31% Similarity=0.548 Sum_probs=79.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
++|+..+.||+|+||.||+|...+ . .||+| +.++||||+++++++.. +..++
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~--~--~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~------~~~~~ 75 (254)
T cd05083 6 QKLTLGEIIGEGEFGAVLQGEYTG--Q--KVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILH------NGLYI 75 (254)
T ss_pred HHceeeeeeccCCCCceEecccCC--C--ceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcC------CCcEE
Confidence 468888999999999999997432 2 78998 57899999999998653 34799
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.++++... ...+++.++..++.|+++|++|||
T Consensus 76 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~qi~~al~~lH 117 (254)
T cd05083 76 VMELMSKGNLVNFLRTRG--RALVSVIQLLQFSLDVAEGMEYLE 117 (254)
T ss_pred EEECCCCCCHHHHHHhcC--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997542 345889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=120.53 Aligned_cols=93 Identities=31% Similarity=0.408 Sum_probs=81.9
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+|+..+.||.|+||.||+|.....+. .||+| +.++|+||+++++++.. +...
T Consensus 2 ~y~~~~~lg~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 74 (274)
T cd06609 2 LFTLLECIGKGSFGEVYKAIDKRTNQ--VVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLK-----GSKL 74 (274)
T ss_pred hhhhhhhhcCCCCeEEEEEEECCCCe--EEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEE-----CCeE
Confidence 57788999999999999999765444 89999 46789999999998765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+|+||+++|+|.++++.. .+++.++..++.|++.|++|||
T Consensus 75 ~~v~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~ql~~~l~~lh 115 (274)
T cd06609 75 WIIMEYCGGGSCLDLLKPG-----KLDETYIAFILREVLLGLEYLH 115 (274)
T ss_pred EEEEEeeCCCcHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999743 5899999999999999999998
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=121.85 Aligned_cols=94 Identities=24% Similarity=0.402 Sum_probs=82.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
..|+..+.||.|+||.||+|.....+. .||+| +.++||||+++++++.. ++..
T Consensus 19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~--~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~ 91 (296)
T cd06655 19 KKYTRYEKIGQGASGTVFTAIDVATGQ--EVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLV-----GDEL 91 (296)
T ss_pred ceEEEEEEEecCCCeEEEEEEEcCCCc--EEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEec-----CceE
Confidence 458889999999999999998654434 89998 46799999999999765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+||||+++|+|.+++... .+++.++..++.|++.|++|||
T Consensus 92 ~lv~e~~~~~~L~~~~~~~-----~l~~~~~~~i~~~l~~al~~LH 132 (296)
T cd06655 92 FVVMEYLAGGSLTDVVTET-----CMDEAQIAAVCRECLQALEFLH 132 (296)
T ss_pred EEEEEecCCCcHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998632 4899999999999999999998
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-11 Score=124.51 Aligned_cols=95 Identities=28% Similarity=0.432 Sum_probs=82.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------------cCCCCcceeeEeeeeeccc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
+.|-....+|+|||+.||||..-. ..+.|||| +.++||-||++|+|+.-
T Consensus 463 ~RYLlLhLLGrGGFSEVyKAFDl~--EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfsl-- 538 (775)
T KOG1151|consen 463 DRYLLLHLLGRGGFSEVYKAFDLT--EQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSL-- 538 (775)
T ss_pred HHHHHHHHhccccHHHHHHhcccc--hhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeee--
Confidence 457788999999999999998433 34589999 57899999999999754
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yL 808 (809)
+.+.++-|+|||+|.+|+-||+.+ +.+++.++..|+.||..||.||
T Consensus 539 --DtdsFCTVLEYceGNDLDFYLKQh----klmSEKEARSIiMQiVnAL~YL 584 (775)
T KOG1151|consen 539 --DTDSFCTVLEYCEGNDLDFYLKQH----KLMSEKEARSIIMQIVNALKYL 584 (775)
T ss_pred --ccccceeeeeecCCCchhHHHHhh----hhhhHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999855 5689999999999999999998
|
|
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-10 Score=121.07 Aligned_cols=100 Identities=29% Similarity=0.492 Sum_probs=83.4
Q ss_pred ccccccceeccCCceeEEEEEECC--CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH--DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~--~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||.||+|++.. ...+..|||| +.++||||+++++++.. .++
T Consensus 4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~---~~~ 80 (284)
T cd05038 4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEK---PGG 80 (284)
T ss_pred hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeec---CCC
Confidence 357778999999999999999753 2344589999 46789999999998754 225
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++||||+++|+|.++++... ..++|.++..++.|++.||+|||
T Consensus 81 ~~~~lv~e~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~l~~aL~~lH 126 (284)
T cd05038 81 RSLRLIMEYLPSGSLRDYLQRHR---DQINLKRLLLFSSQICKGMDYLG 126 (284)
T ss_pred CceEEEEecCCCCCHHHHHHhCc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999997543 35899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=118.74 Aligned_cols=93 Identities=26% Similarity=0.563 Sum_probs=76.4
Q ss_pred ceeccCCceeEEEEEECCC-CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHD-DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~-~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
+.||+|+||+||+|...+. .....||+| +.++||||++++++|.. .+...++||
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~~lv~ 76 (262)
T cd05058 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLP----SEGSPLVVL 76 (262)
T ss_pred CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeec----CCCCcEEEE
Confidence 4689999999999986532 234579998 56799999999998753 245678999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||+++|+|.+++++.. ...++..+..++.|+++|++|||
T Consensus 77 e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH 115 (262)
T cd05058 77 PYMKHGDLRNFIRSET---HNPTVKDLIGFGLQVAKGMEYLA 115 (262)
T ss_pred ecCCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997542 34678889999999999999998
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=121.44 Aligned_cols=101 Identities=32% Similarity=0.519 Sum_probs=83.0
Q ss_pred ccccccceeccCCceeEEEEEECCC---CceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.+|...+.||+|+||.||+|+.... .....+|+| ++++||||+++++++.. +
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 79 (291)
T cd05094 5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGD-----G 79 (291)
T ss_pred HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEcc-----C
Confidence 3577889999999999999985431 123468888 57899999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.++++.+.. ....++|.+++.++.|++.|++|||
T Consensus 80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH 140 (291)
T cd05094 80 DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA 140 (291)
T ss_pred CceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999975421 1235899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=119.93 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=75.0
Q ss_pred eeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 711 LIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 711 ~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.||+|+||.||++.....+. .||+| ...+||||+++++++.. ++..+
T Consensus 1 ~lg~G~~g~Vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~ 73 (279)
T cd05633 1 IIGRGGFGEVYGCRKADTGK--MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHT-----PDKLC 73 (279)
T ss_pred CcccCCCeEEEEEEECCCCc--EEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEec-----CCeEE
Confidence 48999999999999765444 89998 12369999999998765 67899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.+++..+ ..++|.++..++.|++.||+|||
T Consensus 74 lv~e~~~~~~L~~~i~~~----~~l~~~~~~~i~~qi~~al~~lH 114 (279)
T cd05633 74 FILDLMNGGDLHYHLSQH----GVFSEKEMRFYATEIILGLEHMH 114 (279)
T ss_pred EEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998743 35899999999999999999998
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-11 Score=132.19 Aligned_cols=98 Identities=31% Similarity=0.451 Sum_probs=84.9
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.+.++|+..+.+|.|.||.|||++.... +...||| +..+|||||.++|.+.. .
T Consensus 12 nP~ddyellqrvgsgTygdvyKaRd~~s--~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr-----~ 84 (829)
T KOG0576|consen 12 NPQDDYELLQRVGSGTYGDVYKARDKRS--GELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLR-----R 84 (829)
T ss_pred CCccchhheeeecCCcccchhhhccccc--CchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhh-----h
Confidence 3457899999999999999999995544 3377777 67899999999998765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..||.||||.+|+|++.-+.. .++++.++..+++...+|++|||
T Consensus 85 dklwicMEycgggslQdiy~~T----gplselqiayvcRetl~gl~ylh 129 (829)
T KOG0576|consen 85 DKLWICMEYCGGGSLQDIYHVT----GPLSELQIAYVCRETLQGLKYLH 129 (829)
T ss_pred cCcEEEEEecCCCcccceeeec----ccchhHHHHHHHhhhhccchhhh
Confidence 7899999999999999988743 56899999999999999999998
|
|
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=121.16 Aligned_cols=94 Identities=26% Similarity=0.335 Sum_probs=81.7
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++.. +..
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~ 73 (286)
T cd07832 1 RYKILGRIGEGAHGIVFKAKDRETGE--TVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPH-----GSG 73 (286)
T ss_pred CceEEeecccCCCcEEEEEEECCCCc--eEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEec-----CCe
Confidence 47788999999999999999765544 89998 46789999999999765 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+ +++|.++++... ..+++.++..++.||++||+|||
T Consensus 74 ~~~v~e~~-~~~L~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH 116 (286)
T cd07832 74 FVLVMEYM-PSDLSEVLRDEE---RPLPEAQVKSYMRMLLKGVAYMH 116 (286)
T ss_pred eEEEeccc-CCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999987542 45899999999999999999998
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.2e-11 Score=122.75 Aligned_cols=99 Identities=22% Similarity=0.299 Sum_probs=78.9
Q ss_pred ccccceeccCCceeEEEEEECCCCce-eEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHE-TLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~-~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|...+.||+|+||.||+++....+.. ...++| +.++||||+++++++.. .+.
T Consensus 2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 76 (260)
T cd08222 2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLE-----RDA 76 (260)
T ss_pred ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhc-----CCc
Confidence 67789999999999999986543221 112222 46789999999998654 667
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++++|.++++........+++.++..++.|+++|++|||
T Consensus 77 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH 123 (260)
T cd08222 77 FCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMH 123 (260)
T ss_pred eEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998753333456899999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-10 Score=120.03 Aligned_cols=101 Identities=31% Similarity=0.535 Sum_probs=82.5
Q ss_pred ccccccceeccCCceeEEEEEECC---CCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.+|...++||+|+||.||++...+ ...+..+|+| +.++|+||+++++++.. +
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 79 (280)
T cd05092 5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTE-----G 79 (280)
T ss_pred HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEec-----C
Confidence 357778999999999999997532 2234478888 56799999999998765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPE-----------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~-----------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.++++..+. ....+++.++..++.|++.|++|||
T Consensus 80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH 139 (280)
T cd05092 80 RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA 139 (280)
T ss_pred CceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999975421 1135889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-10 Score=117.99 Aligned_cols=95 Identities=28% Similarity=0.334 Sum_probs=83.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||+|+||.||+|+....+ +.|||| +.++|+||+++++++.. ++.
T Consensus 1 ~~~~~~~~i~~g~~~~v~~~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~ 73 (264)
T cd06623 1 SDLERVKVLGQGSSGVVYKVRHKPTG--KIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYK-----EGE 73 (264)
T ss_pred CcceeeeeeeecCCeEEEEEEEcCCC--cEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcc-----CCe
Confidence 36788899999999999999976543 389998 46789999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++++|.+++... ..+++..+..++.|+++|++|||
T Consensus 74 ~~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~~l~~~l~~lh 116 (264)
T cd06623 74 ISIVLEYMDGGSLADLLKKV----GKIPEPVLAYIARQILKGLDYLH 116 (264)
T ss_pred EEEEEEecCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999753 45899999999999999999999
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-10 Score=122.70 Aligned_cols=97 Identities=31% Similarity=0.531 Sum_probs=80.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCc--eeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||.||+|.....+. ...||+| +.++||||++++++|..
T Consensus 7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~------ 80 (303)
T cd05110 7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS------ 80 (303)
T ss_pred hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcC------
Confidence 467788999999999999998754332 2357888 46789999999998753
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++++||+++|+|.+++..+. ..+++..+..++.|+++||+|||
T Consensus 81 ~~~~~v~e~~~~g~l~~~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH 126 (303)
T cd05110 81 PTIQLVTQLMPHGCLLDYVHEHK---DNIGSQLLLNWCVQIAKGMMYLE 126 (303)
T ss_pred CCceeeehhcCCCCHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHh
Confidence 34679999999999999997542 35889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-10 Score=120.06 Aligned_cols=97 Identities=25% Similarity=0.470 Sum_probs=80.9
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++++|...+.||+|+||.||+|.....+. .||+| +.++|+||+++++++.. +
T Consensus 3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-----~ 75 (291)
T cd07870 3 AATSYLNLEKLGEGSYATVYKGISRINGQ--LVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHT-----K 75 (291)
T ss_pred ccceeEEEEEEEecCCEEEEEEEEcCCCc--EEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEec-----C
Confidence 45679999999999999999999665444 89998 46789999999999764 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||++ +++.+++.... ..+.+.++..++.|+++||+|||
T Consensus 76 ~~~~lv~e~~~-~~l~~~~~~~~---~~~~~~~~~~~~~qi~~~L~~lH 120 (291)
T cd07870 76 ETLTFVFEYMH-TDLAQYMIQHP---GGLHPYNVRLFMFQLLRGLAYIH 120 (291)
T ss_pred CeEEEEEeccc-CCHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999996 67877775432 34788889999999999999998
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-11 Score=119.31 Aligned_cols=207 Identities=27% Similarity=0.214 Sum_probs=133.0
Q ss_pred ccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEccc-ccCcccCCccccCCC
Q 040849 388 SGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK-NMLEGSIPSSLGKCQ 466 (809)
Q Consensus 388 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~ 466 (809)
-.+.-+.+|..+.++.+.-. .+-+....-|.|+++.+.+..++.. |. +--+..+.....+. .-..|..-......+
T Consensus 208 f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~-~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDV-PS-LLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred cchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccccc-cc-ccchhhhcCccCCCCCccCCceEEecchHh
Confidence 33444555666666655432 1112222335677777666544321 11 11111111111111 111222222333345
Q ss_pred CCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeC
Q 040849 467 NLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546 (809)
Q Consensus 467 ~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 546 (809)
.|+.+|||+|.|+ .+..+..-.+.+ +.|++|+|.+.... .+..+++|+.||||+|.++ .+..+=..+-+++.|.|
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccce-eEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 7888899999887 666666667777 78999999887432 3788899999999999998 56666667888999999
Q ss_pred cCCccccccchhhcCCCCCCEEeCCCCCccccc-ccccccCCCCCeEEccCCcccccCC
Q 040849 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRI-PKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 547 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~-p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
+.|.+... ..+..+-+|..||+++|++.... -..++++|-|+++.+.+|++.+.+-
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99988733 35677788999999999987543 2467889999999999999987554
|
|
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-10 Score=118.52 Aligned_cols=93 Identities=30% Similarity=0.492 Sum_probs=79.9
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------------cCCCCcceeeEeeeeeccc
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
|.....||+|+||.||+|.....+. .||+| ++++||||+++++++..
T Consensus 2 ~~~~~~ig~g~~~~v~~a~~~~~~~--~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-- 77 (267)
T cd06628 2 WIKGALIGSGSFGSVYLGMNASSGE--LMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLD-- 77 (267)
T ss_pred ccccceeecCCCeEEEEEEecCCCc--EEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEe--
Confidence 5677899999999999999654433 78887 35789999999999765
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++||||+++++|.+++... ..+++..+..++.|++.||+|||
T Consensus 78 ---~~~~~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~~l~~~l~~lH 123 (267)
T cd06628 78 ---ADHLNIFLEYVPGGSVAALLNNY----GAFEETLVRNFVRQILKGLNYLH 123 (267)
T ss_pred ---CCccEEEEEecCCCCHHHHHHhc----cCccHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999743 35889999999999999999998
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-10 Score=120.45 Aligned_cols=103 Identities=20% Similarity=0.330 Sum_probs=80.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCC-CCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSI-RHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l-~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||.||+|.....+. .||+| +.+ +||||+++++++......+.
T Consensus 1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~--~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~ 78 (295)
T cd07837 1 DAYEKLEKIGEGTYGKVYKARDKNTGK--LVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGK 78 (295)
T ss_pred CCceEeeEecccCCeEEEEEEECCCCc--EEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCC
Confidence 368889999999999999999765444 89999 234 47999999998765222122
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCC-CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEA-PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~-~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...|+||||+++ +|.+++...... ...+++.++..++.||++||+|||
T Consensus 79 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH 127 (295)
T cd07837 79 PSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH 127 (295)
T ss_pred ceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 348999999985 898888654322 346899999999999999999998
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-10 Score=126.27 Aligned_cols=97 Identities=23% Similarity=0.317 Sum_probs=82.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------cCCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
...|...+.||+|+||.||+|...+...++.||+| +.++|||||++++++.. +...++||
T Consensus 91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-----~~~~~lv~ 165 (392)
T PHA03207 91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILKTISHRAIINLIHAYRW-----KSTVCMVM 165 (392)
T ss_pred cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccccHHHHHHHHHhcCCCCccceeeeEee-----CCEEEEEe
Confidence 34689999999999999999987655555689999 57899999999998654 67899999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||+. ++|.+++... ..++|.++..|+.|++.||+|||
T Consensus 166 e~~~-~~l~~~l~~~----~~l~~~~~~~i~~ql~~aL~~LH 202 (392)
T PHA03207 166 PKYK-CDLFTYVDRS----GPLPLEQAITIQRRLLEALAYLH 202 (392)
T ss_pred hhcC-CCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9996 6899888532 45899999999999999999998
|
|
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-10 Score=121.49 Aligned_cols=97 Identities=21% Similarity=0.305 Sum_probs=81.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||.||+|+.+..+. .||+| ++++||||+++++++... +..
T Consensus 5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~---~~~ 79 (293)
T cd07843 5 DEYEKLNRIEEGTYGVVYRARDKKTGE--IVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGS---NLD 79 (293)
T ss_pred hhhhhhhhhcCCCCeEEEEEEECCCCc--EEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEec---CCC
Confidence 468888999999999999999765444 78888 367899999999987651 137
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+||||++ ++|.+++..+. ..+++.++..++.||++||+|||
T Consensus 80 ~~~lv~e~~~-~~L~~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH 123 (293)
T cd07843 80 KIYMVMEYVE-HDLKSLMETMK---QPFLQSEVKCLMLQLLSGVAHLH 123 (293)
T ss_pred cEEEEehhcC-cCHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999997 59999887542 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-10 Score=119.20 Aligned_cols=91 Identities=35% Similarity=0.630 Sum_probs=75.5
Q ss_pred ceeccCCceeEEEEEECCCC--------ceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 710 NLIGAGSFGSVYKGILNHDD--------HETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~--------~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+.||+|+||.||+|+..+.. ....|++| +.++||||+++++++.. ..
T Consensus 1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------~~ 74 (259)
T cd05037 1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR------DE 74 (259)
T ss_pred CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec------CC
Confidence 46899999999999986543 11246777 57799999999998753 45
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.++++... ..+++..+..++.|++.||+|||
T Consensus 75 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~i~~~l~~LH 118 (259)
T cd05037 75 NIMVEEYVKFGPLDVFLHREK---NNVSLHWKLDVAKQLASALHYLE 118 (259)
T ss_pred cEEEEEcCCCCcHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999998542 25899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-10 Score=121.01 Aligned_cols=95 Identities=26% Similarity=0.452 Sum_probs=80.7
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||+|+....+. .|||| ++++||||+++++++.. ++.
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~ 73 (284)
T cd07860 1 NFQKVEKIGEGTYGVVYKARNKLTGE--VVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENK 73 (284)
T ss_pred CceeeeeecCCCceEEEEEEECCCCC--EEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhccc-----CCc
Confidence 47888999999999999999765444 89998 46789999999998654 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||++ ++|.+++.... ...+++..+..++.|+++||+|||
T Consensus 74 ~~~v~e~~~-~~l~~~~~~~~--~~~l~~~~~~~~~~~i~~~l~~lh 117 (284)
T cd07860 74 LYLVFEFLH-QDLKKFMDASP--LSGIPLPLIKSYLFQLLQGLAFCH 117 (284)
T ss_pred EEEEeeccc-cCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999996 68999887542 345899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-10 Score=118.07 Aligned_cols=92 Identities=28% Similarity=0.371 Sum_probs=77.6
Q ss_pred ceeccCCceeEEEEEECC-CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 710 NLIGAGSFGSVYKGILNH-DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~-~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
+.||+|+||.||+|.+.. ++....|||| ++++|||||++++++.. ...++||
T Consensus 1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~~~~v~ 74 (257)
T cd05040 1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT------HPLMMVT 74 (257)
T ss_pred CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC------CeEEEEE
Confidence 468999999999999765 3333468999 46789999999998642 6789999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||+++|+|.+++..... ..++|..+..++.|+++||+|||
T Consensus 75 e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~qi~~~L~~lH 114 (257)
T cd05040 75 ELAPLGSLLDRLRKDAL--GHFLISTLCDYAVQIANGMRYLE 114 (257)
T ss_pred EecCCCcHHHHHHhccc--ccCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986431 46899999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-10 Score=118.04 Aligned_cols=95 Identities=34% Similarity=0.597 Sum_probs=79.9
Q ss_pred ceeccCCceeEEEEEECCC-CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHD-DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~-~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
+.||+|+||.||+|..... ..+..||+| +.++|+||+++++++.. +...++||
T Consensus 1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~lv~ 75 (262)
T cd00192 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE-----EEPLYLVL 75 (262)
T ss_pred CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecC-----CCceEEEE
Confidence 4689999999999997653 223489999 46789999999999765 67899999
Q ss_pred eccCCCChhhhhcCCCCC-----CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEA-----PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~-----~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||+++|+|.++++..... ...+++.++..++.|+++|++|||
T Consensus 76 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH 122 (262)
T cd00192 76 EYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA 122 (262)
T ss_pred EeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999864211 356899999999999999999998
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-10 Score=119.07 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=74.7
Q ss_pred eeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 711 LIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 711 ~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.||+|+||.||+|..... ++.||+| +...||+|+++++++.. ++..+
T Consensus 1 ~ig~g~~g~Vy~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~ 73 (278)
T cd05606 1 IIGRGGFGEVYGCRKADT--GKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-----PDKLS 73 (278)
T ss_pred CcccCCCeEEEEEEEecC--CCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeec-----CCEEE
Confidence 489999999999986544 3489999 12468999999998654 67899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.+++... ..++|.++..++.|+++||+|||
T Consensus 74 ~v~e~~~g~~L~~~l~~~----~~l~~~~~~~~~~ql~~~l~~lH 114 (278)
T cd05606 74 FILDLMNGGDLHYHLSQH----GVFSEAEMRFYAAEIILGLEHMH 114 (278)
T ss_pred EEEecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988643 35899999999999999999998
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-10 Score=117.59 Aligned_cols=95 Identities=29% Similarity=0.528 Sum_probs=81.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.+|+..+.||+|+||.||+|....+ . .+|+| +.++||||+++++++.. ....+
T Consensus 4 ~~~~~~~~ig~g~~g~v~~~~~~~~-~--~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~ 75 (256)
T cd05112 4 SELTLVQEIGSGQFGLVWLGYWLEK-R--KVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE-----RSPIC 75 (256)
T ss_pred hHeEEEeeecCcccceEEEEEEeCC-C--eEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEcc-----CCceE
Confidence 4678889999999999999987543 3 68888 56899999999998654 66789
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.++++... ..++++.+..++.|++.|++|||
T Consensus 76 ~v~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lH 117 (256)
T cd05112 76 LVFEFMEHGCLSDYLRAQR---GKFSQETLLGMCLDVCEGMAYLE 117 (256)
T ss_pred EEEEcCCCCcHHHHHHhCc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997542 35789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-10 Score=120.75 Aligned_cols=97 Identities=21% Similarity=0.348 Sum_probs=77.9
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEEEEEecc
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFM 770 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~ 770 (809)
..+||+|+||+||+|+..++..++.||+| +.++|||||++++++.. .++...++||||+
T Consensus 6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~---~~~~~~~lv~e~~ 82 (317)
T cd07867 6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLS---HSDRKVWLLFDYA 82 (317)
T ss_pred ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEec---cCCCeEEEEEeee
Confidence 36899999999999997765555689999 46889999999998754 2356789999999
Q ss_pred CCCChhhhhcCCC-----CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 771 VNGSLEEWLHPKP-----EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 771 ~~GsL~~~l~~~~-----~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++ +|.+++...+ .....+++..+..++.|+++||+|||
T Consensus 83 ~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH 125 (317)
T cd07867 83 EH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH 125 (317)
T ss_pred CC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 74 7877775321 12245889999999999999999999
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-10 Score=118.56 Aligned_cols=89 Identities=21% Similarity=0.300 Sum_probs=76.4
Q ss_pred eccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 712 IGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 712 ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
||+|+||+||+|.....+. .||+| +.++||||+++++++.. .+..|+|||
T Consensus 1 lg~g~~g~vy~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~lv~e 73 (277)
T cd05577 1 LGKGGFGEVCACQVKATGK--MYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFET-----KDDLCLVMT 73 (277)
T ss_pred CCCCCceeEEEEEEcCCCc--EEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEec-----CCeEEEEEe
Confidence 6999999999998665444 88988 46789999999998654 678999999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.+++.+.. ...+++.++..++.|+++|+.|||
T Consensus 74 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~ql~~~l~~lH 112 (277)
T cd05577 74 LMNGGDLKYHIYNVG--EPGFPEARAIFYAAQIICGLEHLH 112 (277)
T ss_pred cCCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999997543 235899999999999999999998
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-11 Score=116.12 Aligned_cols=103 Identities=24% Similarity=0.379 Sum_probs=86.8
Q ss_pred hccccccc-ceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 702 ATDGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 702 ~~~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.+++|... ++||-|--|+|-.+..+.. +..+|+| ..-.|||||.+++++.. .+++.+.+.
T Consensus 59 itedY~is~qvLG~GinGkV~~C~~k~T--~ekfALKvL~Ds~KARrEVeLHw~~s~h~~iV~IidVyeN-s~~~rkcLL 135 (400)
T KOG0604|consen 59 ITEDYSISWQVLGAGINGKVVQCVHKRT--QEKFALKVLLDSPKARREVELHWMASGHPHIVSIIDVYEN-SYQGRKCLL 135 (400)
T ss_pred chhhheehhhhhccccCCceEEEEeccc--hhhhHHHHHhcCHHHHhHhhhhhhhcCCCceEEeehhhhh-hccCceeeE
Confidence 45667665 6899999999999996654 4489999 23469999999999765 366778899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||+|+||+|+..++.++ ...+++.++..|++||+.|+.|||
T Consensus 136 iVmE~meGGeLfsriq~~g--~~afTErea~eI~~qI~~Av~~lH 178 (400)
T KOG0604|consen 136 IVMECMEGGELFSRIQDRG--DQAFTEREASEIMKQIGLAVRYLH 178 (400)
T ss_pred eeeecccchHHHHHHHHcc--cccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999775 356999999999999999999999
|
|
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=117.20 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=81.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.+|...+.||+|+||.||+|+.... +..||+| +.++|+||+++++++...
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~--~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~--- 76 (264)
T cd06653 2 VNWRLGKLLGRGAFGEVYLCYDADT--GRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDP--- 76 (264)
T ss_pred CceeeeeeEccCCCeEEEEEEEcCC--CCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcC---
Confidence 4688899999999999999996544 3478888 357899999999987541
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.....++||||+++|+|.+++... ..+++..+.+++.|++.||+|||
T Consensus 77 ~~~~~~~v~e~~~~~~L~~~~~~~----~~l~~~~~~~~~~~i~~al~~LH 123 (264)
T cd06653 77 EEKKLSIFVEYMPGGSIKDQLKAY----GALTENVTRRYTRQILQGVSYLH 123 (264)
T ss_pred CCCEEEEEEEeCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 235688999999999999998743 34789999999999999999998
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=118.94 Aligned_cols=93 Identities=25% Similarity=0.350 Sum_probs=79.7
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCC---CCcceeeEeeeeeccccCCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSI---RHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l---~H~niv~l~~~~~~~~~~~~ 760 (809)
.|+..+.||+|+||.||+|.....+. .||+| +.+ .|||++++++++.. +
T Consensus 2 ~y~~~~~l~~g~~g~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~-----~ 74 (277)
T cd06917 2 LYQRLELIGRGAYGAVYRGKHVPTGR--VVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLK-----G 74 (277)
T ss_pred hhhhhhheeccCCceEEEEEEcCCCc--EEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeee-----C
Confidence 46778899999999999999755434 89998 234 49999999998765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++||||+++|+|.++++.. .+++..+..++.|+++||+|||
T Consensus 75 ~~~~lv~e~~~~~~L~~~~~~~-----~l~~~~~~~i~~~i~~~l~~lh 118 (277)
T cd06917 75 PRLWIIMEYAEGGSVRTLMKAG-----PIAEKYISVIIREVLVALKYIH 118 (277)
T ss_pred CEEEEEEecCCCCcHHHHHHcc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998642 5889999999999999999998
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=119.97 Aligned_cols=100 Identities=20% Similarity=0.407 Sum_probs=81.8
Q ss_pred cccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+|...+.||+|+||+||+|...+. ..++.||+| +.++|||||++++++.. .
T Consensus 6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-----~ 80 (283)
T cd05091 6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTK-----E 80 (283)
T ss_pred HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-----C
Confidence 467778999999999999986432 234579999 46889999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCC------------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKP------------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~------------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++++||+++++|.+++..+. .....+++..+.+++.|+++||+|||
T Consensus 81 ~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH 141 (283)
T cd05091 81 QPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS 141 (283)
T ss_pred CceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999985321 11235889999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-10 Score=119.45 Aligned_cols=99 Identities=28% Similarity=0.359 Sum_probs=85.9
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
..++.|+..+.+|+|+||.||+|.....+. .||+| +.++|+||+++++++.. ++
T Consensus 16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~ 88 (286)
T cd06614 16 DPRELYKNLEKIGEGASGEVYKATDRATGK--EVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLV-----GD 88 (286)
T ss_pred CccccchHhHhccCCCCeEEEEEEEccCCc--EEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEE-----CC
Confidence 345678888999999999999999765434 78888 56789999999999876 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|+||+++++|.+++..+. ..+++.++..++.|+++||+|||
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~~---~~l~~~~~~~i~~~i~~~L~~lH 133 (286)
T cd06614 89 ELWVVMEYMDGGSLTDIITQNF---VRMNEPQIAYVCREVLQGLEYLH 133 (286)
T ss_pred EEEEEEeccCCCcHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998642 36899999999999999999998
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.3e-11 Score=122.34 Aligned_cols=96 Identities=22% Similarity=0.286 Sum_probs=82.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.-|+..+.||+|.|++|-.|++--. +..|||| +-++|||||++|++... .-
T Consensus 18 GLYDLekTlG~GHFAVVKLArHVFT--GekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDT-----QT 90 (864)
T KOG4717|consen 18 GLYDLEKTLGRGHFAVVKLARHVFT--GEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDT-----QT 90 (864)
T ss_pred eeehhhhhhcCCceehhhhhhhhcc--cceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcc-----cc
Confidence 3478889999999999999885433 3489999 45689999999999544 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+|+|+|.-++|+|++||-++. ..+.+.-+.+|+.||..|+.|+|
T Consensus 91 KlyLiLELGD~GDl~DyImKHe---~Gl~E~La~kYF~QI~~AI~YCH 135 (864)
T KOG4717|consen 91 KLYLILELGDGGDLFDYIMKHE---EGLNEDLAKKYFAQIVHAISYCH 135 (864)
T ss_pred eEEEEEEecCCchHHHHHHhhh---ccccHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999998774 34889999999999999999998
|
|
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-10 Score=121.17 Aligned_cols=97 Identities=20% Similarity=0.324 Sum_probs=77.6
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEEEEEecc
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFM 770 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~ 770 (809)
.++||+|+||+||+|+..++..++.||+| ++++|||||++++++.. ..+...++||||+
T Consensus 6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~---~~~~~~~lv~e~~ 82 (317)
T cd07868 6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLS---HADRKVWLLFDYA 82 (317)
T ss_pred ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEec---CCCcEEEEEEecc
Confidence 46899999999999997654455689999 56889999999998754 2256789999999
Q ss_pred CCCChhhhhcCCC-----CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 771 VNGSLEEWLHPKP-----EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 771 ~~GsL~~~l~~~~-----~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+ ++|.+++.... .....+++..+..++.||+.||+|||
T Consensus 83 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH 125 (317)
T cd07868 83 E-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH 125 (317)
T ss_pred C-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 6 58888875321 12235889999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-10 Score=117.49 Aligned_cols=93 Identities=30% Similarity=0.426 Sum_probs=80.7
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
|...+.||+|+||.||+|.....+. .||+| +.++|+||+++++++.. .+..
T Consensus 2 y~~~~~lg~G~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~ 74 (264)
T cd06626 2 WQRGNKIGGGTFGKVYTAVNLDTGE--LMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVH-----REKV 74 (264)
T ss_pred ceeeeEeecCCCcEEEEEEECCCCc--EEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEec-----CCEE
Confidence 6778999999999999999655434 88988 56899999999998654 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|+||+++++|.++++.. ..+++..+..++.|+++||+|||
T Consensus 75 ~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lh 116 (264)
T cd06626 75 YIFMEYCSGGTLEELLEHG----RILDEHVIRVYTLQLLEGLAYLH 116 (264)
T ss_pred EEEEecCCCCcHHHHHhhc----CCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999743 34789999999999999999998
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-10 Score=116.43 Aligned_cols=97 Identities=25% Similarity=0.338 Sum_probs=81.4
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||++....++. .||+| ++++|+|++++++.+.. .+..
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----~~~~ 74 (257)
T cd08223 1 AYCFVRVVGKGSYGEVSLVRHRTDGK--QYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEG----EDGL 74 (257)
T ss_pred CceEEEEecCCCCeEEEEEEEcCCCc--EEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecC----CCCE
Confidence 47888999999999999999765444 79998 46789999999987542 2456
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.++++... ...+++.++..++.|++.|++|||
T Consensus 75 ~~lv~e~~~~~~l~~~l~~~~--~~~l~~~~~~~~~~~l~~~l~~lH 119 (257)
T cd08223 75 LYIVMGFCEGGDLYHKLKEQK--GKLLPENQVVEWFVQIAMALQYLH 119 (257)
T ss_pred EEEEecccCCCcHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997532 345899999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=119.78 Aligned_cols=102 Identities=27% Similarity=0.397 Sum_probs=82.3
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc---
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD--- 756 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~--- 756 (809)
..++|+..+.||+|+||.||+|+....+. .||+| +.++||||+++++++....
T Consensus 5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~--~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~ 82 (302)
T cd07864 5 CVDKFDIIGQIGEGTYGQVYKARDKDTGE--LVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDAL 82 (302)
T ss_pred hhhhhheeeeecccCCEEEEEEEECCCCc--EEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhh
Confidence 45678999999999999999999866544 78988 4678999999999876521
Q ss_pred --cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 --FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 --~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+....++|+||+++ ++.+.+..+ ...+++.++..++.|++.||+|||
T Consensus 83 ~~~~~~~~~~lv~e~~~~-~l~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH 133 (302)
T cd07864 83 DFKKDKGAFYLVFEYMDH-DLMGLLESG---LVHFSEDHIKSFMKQLLEGLNYCH 133 (302)
T ss_pred hccccCCcEEEEEcccCc-cHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1123478999999986 777777643 235899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-10 Score=118.21 Aligned_cols=96 Identities=27% Similarity=0.300 Sum_probs=83.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||+|+||.||++.....+. .||+| +.++||||+++++++.. +..
T Consensus 1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~ 73 (265)
T cd06605 1 DDLEYLGELGAGNSGVVSKVLHRPTGK--IMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYN-----NGD 73 (265)
T ss_pred CcchHHHHhcCCCCeEEEEEEEcCCCc--EEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeec-----CCE
Confidence 357788999999999999999765434 89998 46789999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|+||+++++|.+++.... ..+++..+.+++.|+++|++|||
T Consensus 74 ~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lH 117 (265)
T cd06605 74 ISICMEYMDGGSLDKILKEVQ---GRIPERILGKIAVAVLKGLTYLH 117 (265)
T ss_pred EEEEEEecCCCcHHHHHHHcc---CCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999997542 45889999999999999999999
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-10 Score=118.86 Aligned_cols=98 Identities=23% Similarity=0.352 Sum_probs=83.3
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||+++....+. .+|+| +.++|+||+++++++.. ...
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~ 73 (256)
T cd08530 1 DFKVLKKLGKGSYGSVYKVKRLSDNQ--FYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLD-----GNK 73 (256)
T ss_pred CceEeeeecCCCceeEEEEEECCCCC--EEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhcc-----CCE
Confidence 47778999999999999998665444 78888 56789999999998654 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++++|.+++.+.......+++..+..++.|+++||+|||
T Consensus 74 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh 120 (256)
T cd08530 74 LCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH 120 (256)
T ss_pred EEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764333456899999999999999999998
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-10 Score=116.08 Aligned_cols=98 Identities=28% Similarity=0.403 Sum_probs=83.8
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||++.....+. .||+| +.++|||++++++.+.. ++.
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~-----~~~ 73 (258)
T cd08215 1 KYEIIKQIGKGSFGKVYLVRRKSDGK--LYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEE-----KGK 73 (258)
T ss_pred CceEEeeeccCCCeEEEEEEEcCCCc--EEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEec-----CCE
Confidence 47778999999999999999765434 88898 46789999999998654 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|+||+++++|.++++........+++.++..++.|+++||+|||
T Consensus 74 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh 120 (258)
T cd08215 74 LCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH 120 (258)
T ss_pred EEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865323466899999999999999999998
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-10 Score=121.43 Aligned_cols=92 Identities=33% Similarity=0.393 Sum_probs=78.5
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
|.....||+|+||.||++.....+. .|||| +.++||||+++++++.. ++..++
T Consensus 24 ~~~~~~lg~g~~g~v~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-----~~~~~l 96 (292)
T cd06658 24 LDSFIKIGEGSTGIVCIATEKHTGK--QVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLV-----GDELWV 96 (292)
T ss_pred HhhhhcccCCCCeEEEEEEECCCCC--EEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheec-----CCeEEE
Confidence 4445779999999999998654434 89998 46789999999998765 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.+++.. ..+++.++..++.|++.||+|||
T Consensus 97 v~e~~~~~~L~~~~~~-----~~l~~~~~~~~~~qi~~~l~~LH 135 (292)
T cd06658 97 VMEFLEGGALTDIVTH-----TRMNEEQIATVCLSVLRALSYLH 135 (292)
T ss_pred EEeCCCCCcHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998853 24789999999999999999998
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-10 Score=120.35 Aligned_cols=95 Identities=24% Similarity=0.397 Sum_probs=82.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCC-CcceeeEeeeeeccccCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIR-HRNLVKIITSCASVDFQG 759 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~-H~niv~l~~~~~~~~~~~ 759 (809)
++|...+.||+|+||.||+|+....+. .||+| +.++ ||||+++++++..
T Consensus 1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~----- 73 (280)
T cd05581 1 DDFKFGKIIGEGSFSTVVLAKEKETNK--EYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQD----- 73 (280)
T ss_pred CCceEeeeecCCCceEEEEEEEcCCCC--EEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcC-----
Confidence 368888999999999999999765544 88888 3566 9999999998654
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++.+. ..+++..+..++.|++.||+|||
T Consensus 74 ~~~~~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~i~~ql~~~l~~Lh 119 (280)
T cd05581 74 EENLYFVLEYAPNGELLQYIRKY----GSLDEKCTRFYAAEILLALEYLH 119 (280)
T ss_pred CceEEEEEcCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999754 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-10 Score=119.07 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=80.4
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|+||.||+|...+.+. .|||| +.++|+||+++++++.. ++.
T Consensus 2 ~y~~~~~i~~g~~~~v~~~~~~~~~~--~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~ 74 (288)
T cd07833 2 KYEVLGVVGEGAYGVVLKCRNKATGE--IVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRR-----KGR 74 (288)
T ss_pred ceeEEEEecccCCeeEEEEEeCCCCc--EEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEE-----CCE
Confidence 58888999999999999999765544 89999 46789999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||++++.+..+..+. ..+++.++..++.||++|++|||
T Consensus 75 ~~iv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~i~~~l~~LH 117 (288)
T cd07833 75 LYLVFEYVERTLLELLEASP----GGLPPDAVRSYIWQLLQAIAYCH 117 (288)
T ss_pred EEEEEecCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777666432 34899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-10 Score=119.82 Aligned_cols=94 Identities=21% Similarity=0.412 Sum_probs=79.0
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.|+..+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. ...
T Consensus 1 ~y~~~~~l~~g~~~~vy~~~~~~~g~--~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~-----~~~ 73 (284)
T cd07839 1 KYEKLEKIGEGTYGTVFKAKNRETHE--IVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHS-----DKK 73 (284)
T ss_pred CceeEEEecccCCeEEEEEEECCCCc--EEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhcc-----CCc
Confidence 36778899999999999999765544 78888 35789999999998654 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|+||++ |+|.++++... ..+++..+..++.||++||+|||
T Consensus 74 ~~lv~e~~~-~~l~~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH 116 (284)
T cd07839 74 LTLVFEYCD-QDLKKYFDSCN---GDIDPEIVKSFMFQLLKGLAFCH 116 (284)
T ss_pred eEEEEecCC-CCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999997 58888876432 45899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-10 Score=120.37 Aligned_cols=95 Identities=27% Similarity=0.375 Sum_probs=80.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
..|...+.||+|+||+||+|+....+. .||+| +.++||||++++++|.. +
T Consensus 15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~--~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~-----~ 87 (307)
T cd06607 15 KLFTDLREIGHGSFGAVYFARDVRTNE--VVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLR-----E 87 (307)
T ss_pred hhhhhheeecCCCCeEEEEEEEcCCCc--EEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEe-----C
Confidence 458888999999999999999765444 89988 46899999999999875 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||++ |++.+++.... ..+++.++..++.|++.||.|||
T Consensus 88 ~~~~lv~e~~~-g~l~~~~~~~~---~~l~~~~~~~~~~ql~~~L~~LH 132 (307)
T cd06607 88 HTAWLVMEYCL-GSASDILEVHK---KPLQEVEIAAICHGALQGLAYLH 132 (307)
T ss_pred CeEEEEHHhhC-CCHHHHHHHcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 77999999997 67777775432 35899999999999999999998
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-10 Score=117.95 Aligned_cols=96 Identities=23% Similarity=0.387 Sum_probs=80.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. ++
T Consensus 2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 74 (294)
T PLN00009 2 DQYEKVEKIGEGTYGVVYKARDRVTNE--TIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS-----EK 74 (294)
T ss_pred CceEEEEEecCCCCEEEEEEEecCCCc--EEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEec-----CC
Confidence 468889999999999999999765444 89998 46789999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+||||++ +++.+++.... ...+++..+..++.||+.||+|||
T Consensus 75 ~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH 119 (294)
T PLN00009 75 RLYLVFEYLD-LDLKKHMDSSP--DFAKNPRLIKTYLYQILRGIAYCH 119 (294)
T ss_pred eEEEEEeccc-ccHHHHHHhCC--CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 8999999996 58888876432 234688889999999999999998
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-12 Score=119.96 Aligned_cols=96 Identities=23% Similarity=0.394 Sum_probs=80.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++.|+..++||+|.|+.||++.... +++.+|+| +.++|||||++.+.+.. .
T Consensus 10 ~d~y~l~e~igkG~FSvVrRc~~~~--tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~-----~ 82 (355)
T KOG0033|consen 10 SDNYDVKEELGKGAFSVVRRCVHKT--TGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-----E 82 (355)
T ss_pred chhhhHHHHHccCchHHHHHHHhcc--chHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcc-----c
Confidence 4568888999999999999998443 44577777 57899999999998554 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+.|||+|+|+||+|..-|-.+ ..+++..+-.+++||++||.|+|
T Consensus 83 ~~~ylvFe~m~G~dl~~eIV~R----~~ySEa~aSH~~rQiLeal~yCH 127 (355)
T KOG0033|consen 83 SFHYLVFDLVTGGELFEDIVAR----EFYSEADASHCIQQILEALAYCH 127 (355)
T ss_pred ceeEEEEecccchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998766543 45788899999999999999998
|
|
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-10 Score=115.49 Aligned_cols=100 Identities=21% Similarity=0.332 Sum_probs=83.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
...|...+.||+|+||.|.++.....+ ..|||| +.++|+|||.++++...+....-
T Consensus 21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~--~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f 98 (359)
T KOG0660|consen 21 PRYYVLIEPIGRGAYGVVCSAKDKRTG--EKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKF 98 (359)
T ss_pred cceecccccccCcceeeEEEEEEcCCC--CEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccc
Confidence 345666789999999999999966554 499999 57899999999999776434445
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+|+|+|+| ..||.+.++.. ..++...+..+..|+++||.|+|
T Consensus 99 ~DvYiV~elM-etDL~~iik~~----~~L~d~H~q~f~YQiLrgLKyiH 142 (359)
T KOG0660|consen 99 NDVYLVFELM-ETDLHQIIKSQ----QDLTDDHAQYFLYQILRGLKYIH 142 (359)
T ss_pred ceeEEehhHH-hhHHHHHHHcC----ccccHHHHHHHHHHHHHhcchhh
Confidence 6799999999 56999999843 44899999999999999999999
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-10 Score=114.50 Aligned_cols=99 Identities=29% Similarity=0.494 Sum_probs=82.0
Q ss_pred cHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeee
Q 040849 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 695 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~ 753 (809)
.|+|..+-++ +.+|+|+||.|--+.--. ++.+|||| .--.|+||++++++
T Consensus 74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~--t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLief-- 144 (463)
T KOG0607|consen 74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQ--TGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEF-- 144 (463)
T ss_pred hHHHHHHhHH-----HHhcCccceeeeeeeeec--cchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHH--
Confidence 3556555543 679999999999888433 34489999 12369999999999
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++...|+|||-|.||.|...|+++ +.+++.++.++.++||.||+|||
T Consensus 145 ---FEdd~~FYLVfEKm~GGplLshI~~~----~~F~E~EAs~vvkdia~aLdFlH 193 (463)
T KOG0607|consen 145 ---FEDDTRFYLVFEKMRGGPLLSHIQKR----KHFNEREASRVVKDIASALDFLH 193 (463)
T ss_pred ---hcccceEEEEEecccCchHHHHHHHh----hhccHHHHHHHHHHHHHHHHHHh
Confidence 55588999999999999999999865 56999999999999999999999
|
|
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-10 Score=120.06 Aligned_cols=92 Identities=30% Similarity=0.360 Sum_probs=78.5
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
|+....||+|+||.||+|.....+. .||+| +.++||||+++++++.. ++..|+
T Consensus 23 ~~~~~~ig~g~~g~v~~~~~~~~~~--~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-----~~~~~i 95 (297)
T cd06659 23 LENYIKIGEGSTGIVCIAREKHSGR--QVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLV-----GEELWV 95 (297)
T ss_pred HHhhhhcCCCCceeEEEEEEcCCCC--EEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheee-----CCeEEE
Confidence 4445679999999999999654434 89998 46789999999998765 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.+++.. ..+++.++..++.|++.||+|||
T Consensus 96 v~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~qi~~~L~~LH 134 (297)
T cd06659 96 LMEFLQGGALTDIVSQ-----TRLNEEQIATVCESVLQALCYLH 134 (297)
T ss_pred EEecCCCCCHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998753 34889999999999999999998
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-10 Score=115.64 Aligned_cols=97 Identities=36% Similarity=0.659 Sum_probs=81.2
Q ss_pred ccccceeccCCceeEEEEEECCCC--ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDD--HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~--~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++..+.||+|+||.||+|+..+.+ ....||+| +.++|+||+++++++.. .+.
T Consensus 1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~ 75 (258)
T smart00219 1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTE-----EEP 75 (258)
T ss_pred CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcC-----CCe
Confidence 345688999999999999986643 12479999 46799999999999765 578
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+++|||+++|+|.++++... ...+++.++..++.|++.|++|||
T Consensus 76 ~~~i~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ql~~~l~~lh 120 (258)
T smart00219 76 LMIVMEYMEGGDLLDYLRKNR--PKELSLSDLLSFALQIARGMEYLE 120 (258)
T ss_pred eEEEEeccCCCCHHHHHHhhh--hccCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997542 122899999999999999999998
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-10 Score=115.62 Aligned_cols=87 Identities=22% Similarity=0.328 Sum_probs=75.8
Q ss_pred eccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 712 IGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 712 ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
||+|+||.||+|+....+. .||+| +.++||||+++++++.. +...++|||
T Consensus 1 lg~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~lv~e 73 (262)
T cd05572 1 LGVGGFGRVELVKVKSKNR--TFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKD-----KKYIYMLME 73 (262)
T ss_pred CCCCCceEEEEEEECCCCc--EEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEc-----CCccEEEEe
Confidence 6999999999999765434 89988 46789999999998654 678999999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.+++++. ..+++..+..++.|+++||+|||
T Consensus 74 ~~~~~~L~~~l~~~----~~l~~~~~~~~~~~i~~~l~~lH 110 (262)
T cd05572 74 YCLGGELWTILRDR----GLFDEYTARFYIACVVLAFEYLH 110 (262)
T ss_pred cCCCCcHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999754 34889999999999999999998
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-10 Score=119.07 Aligned_cols=100 Identities=21% Similarity=0.390 Sum_probs=79.7
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|+..+.||+|+||.||+|.....+.++.||+| +.++||||+++++++.. ..++.
T Consensus 2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~~ 78 (316)
T cd07842 2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLE---HADKS 78 (316)
T ss_pred ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeC---CCCce
Confidence 67788999999999999997662234489999 35789999999999865 12367
Q ss_pred EEEEEeccCCCChhhhhcCCCCC-CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEA-PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~-~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++ ++.+++...... ...+++..+..++.|++.||+|||
T Consensus 79 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH 125 (316)
T cd07842 79 VYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH 125 (316)
T ss_pred EEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999975 677776533222 236889999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-10 Score=120.08 Aligned_cols=91 Identities=26% Similarity=0.335 Sum_probs=76.3
Q ss_pred ceeccC--CceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 710 NLIGAG--SFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 710 ~~ig~G--~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
..||+| +||+||+++....+. .|||| +.++|||||++++++.. ++..++
T Consensus 4 ~~ig~g~~~~~~v~~a~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~-----~~~~~~ 76 (328)
T cd08226 4 VEIGRGFCNLTSVYLARHTPTGT--LVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTT-----GSWLWV 76 (328)
T ss_pred HHhCCcccCceeEEEEEEcCCCc--EEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEec-----CCceEE
Confidence 456666 999999999654434 89999 34789999999999765 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|++.+++++.. ...+++..+..++.|++.||+|||
T Consensus 77 v~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~qi~~aL~~lH 118 (328)
T cd08226 77 ISPFMAYGSANSLLKTYF--PEGMSEALIGNILFGALRGLNYLH 118 (328)
T ss_pred EEecccCCCHHHHHHhhc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998643 234889999999999999999999
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.2e-11 Score=110.45 Aligned_cols=106 Identities=26% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCCccEEeCCCCCCCccCCcccc-ccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccc-cCCCCCCE
Q 040849 98 LSFLRVLDLKNNSFRNEIPQEIG-YLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKL-GSLSKLRT 175 (809)
Q Consensus 98 l~~L~~LdLs~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~ 175 (809)
...+++|+|++|.|+.+ +.++ .+.+|+.|||++|.++.. + .+..+++|++|++++|+++...+ .+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CH-HHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcccc-chHHhCCcCCE
Confidence 33455666666665532 2233 345555555555555522 1 24455555555555555553222 22 23455555
Q ss_pred EEcccccCcccC-CccCCCCCCCCEEEcccCccc
Q 040849 176 LAVHYNNLSGQI-PSSFGNLSSLEVLSASANQFV 208 (809)
Q Consensus 176 L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~ 208 (809)
|+|++|+|...- -..+..+++|++|++.+|.++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555555554211 122344444555555554443
|
|
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-10 Score=116.83 Aligned_cols=95 Identities=25% Similarity=0.344 Sum_probs=77.5
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCC-CCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSI-RHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
|+..+.||+|+||.||+|+....+. .||+| +++ +||||+++++++... ..+..
T Consensus 1 y~~~~~lg~g~~~~v~~~~~~~~~~--~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~---~~~~~ 75 (282)
T cd07831 1 YKILGKIGEGTFSEVLKAQSRKTGK--YYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDR---KTGRL 75 (282)
T ss_pred CceEeeccccccceEEEEEEcCCCc--EEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecC---CCCcE
Confidence 5567889999999999999665434 89999 233 499999999997651 12678
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||++ |++.+++..+. ..++|.++..++.|+++||+|||
T Consensus 76 ~lv~e~~~-~~l~~~l~~~~---~~~~~~~~~~~~~qi~~~L~~LH 117 (282)
T cd07831 76 ALVFELMD-MNLYELIKGRK---RPLPEKRVKSYMYQLLKSLDHMH 117 (282)
T ss_pred EEEEecCC-ccHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999997 58888887532 45899999999999999999998
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-10 Score=117.49 Aligned_cols=96 Identities=22% Similarity=0.323 Sum_probs=79.3
Q ss_pred cccccceeccCCceeEEEEEECCC-CceeEEEEe------------------------cCC-CCcceeeEeeeeeccccC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK------------------------RSI-RHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK------------------------~~l-~H~niv~l~~~~~~~~~~ 758 (809)
+|+..+.||+|+||.||+|+...+ ..++.||+| +.+ +|+||+++++++..
T Consensus 1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~---- 76 (290)
T cd05613 1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT---- 76 (290)
T ss_pred CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeec----
Confidence 477789999999999999986421 134479998 234 69999999988654
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...++||||+++|+|.+++..+ ..+++.++..++.|+++||+|||
T Consensus 77 -~~~~~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~al~~lH 122 (290)
T cd05613 77 -DTKLHLILDYINGGELFTHLSQR----ERFKEQEVQIYSGEIVLALEHLH 122 (290)
T ss_pred -CCeEEEEEecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999753 34789999999999999999998
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.04 E-value=8e-10 Score=114.09 Aligned_cols=96 Identities=28% Similarity=0.401 Sum_probs=81.6
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|...+.||+|++|.||+|.....+. .|++| ++++||||+++++.+... ....
T Consensus 1 ~~~~~~~i~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~---~~~~ 75 (260)
T cd06606 1 EWTRGELLGRGSFGSVYLALDKDTGE--LMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDE---EKNT 75 (260)
T ss_pred CceeeeEeeecCceEEEEEEECCCCc--EEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecC---CCCe
Confidence 36778999999999999999765434 88888 467899999999987651 0278
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++++|.+++... ..++|.++..++.|+++|++|||
T Consensus 76 ~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~l~~~l~~lh 118 (260)
T cd06606 76 LNIFLEYVSGGSLSSLLKKF----GKLPEPVIRKYTRQILEGLAYLH 118 (260)
T ss_pred EEEEEEecCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 26899999999999999999998
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.4e-10 Score=118.33 Aligned_cols=93 Identities=28% Similarity=0.394 Sum_probs=78.8
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|+..+.||+|+||.||+|+....+. .||+| +.++|||+|++++++.. ++.
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~--~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~ 99 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNE--VVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLR-----EHT 99 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCc--EEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-----CCe
Confidence 6778899999999999999765544 88888 45789999999999865 677
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||++ |++.+.+..+ ...++|.++..++.|+++||.|||
T Consensus 100 ~~lv~e~~~-g~l~~~~~~~---~~~l~~~~~~~i~~~i~~~l~~lH 142 (317)
T cd06635 100 AWLVMEYCL-GSASDLLEVH---KKPLQEVEIAAITHGALQGLAYLH 142 (317)
T ss_pred EEEEEeCCC-CCHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999997 5888877643 245899999999999999999998
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-10 Score=109.35 Aligned_cols=109 Identities=28% Similarity=0.359 Sum_probs=33.7
Q ss_pred ccccccCCccccCCCcCcccCCcccc-CCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccC-CCCCC
Q 040849 119 IGYLFRLQFLWLDNNTFGGQIPDNIS-HCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSF-GNLSS 196 (809)
Q Consensus 119 ~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~ 196 (809)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|||++|.++.. +.+..+++|++|++++|+++. +.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 4455577888888888873 2 2354 467788888888888743 246677888888888888874 33333 35777
Q ss_pred CCEEEcccCcccccCc-ccccCCCCccEEEeecCcCC
Q 040849 197 LEVLSASANQFVGQIP-KTLSQLKRMRFIGFGVNKLS 232 (809)
Q Consensus 197 L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 232 (809)
|++|++++|+|..... ..+..+++|+.|++.+|.++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 8888888887764211 34555666666666666654
|
|
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-10 Score=117.33 Aligned_cols=98 Identities=28% Similarity=0.387 Sum_probs=81.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||.||+|.....+. .||+| ++++|+||+++++++... ..
T Consensus 6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~~ 80 (309)
T cd07845 6 VTEFEKLNRIGEGTYGIVYRARDTTSGE--IVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGK---HL 80 (309)
T ss_pred ccceeEeeeeeecCCEEEEEEEECCCCc--EEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecC---CC
Confidence 4679999999999999999999765444 89998 367899999999987541 23
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||++ ++|.+++.... ..+++.++..++.|+++|++|||
T Consensus 81 ~~~~lv~e~~~-~~l~~~l~~~~---~~l~~~~~~~~~~qi~~~l~~lH 125 (309)
T cd07845 81 DSIFLVMEYCE-QDLASLLDNMP---TPFSESQVKCLMLQLLRGLQYLH 125 (309)
T ss_pred CeEEEEEecCC-CCHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 56899999997 48888887532 45899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-10 Score=119.90 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=82.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.++|+..+.||+|+||.||+|.....+. .||+| ++++||||+++++++....+....
T Consensus 4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 81 (336)
T cd07849 4 GPRYQNLSYIGEGAYGMVCSATHKPTGV--KVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFN 81 (336)
T ss_pred ccceEEEEEEEecCCeEEEEEEEcCCCC--eEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccc
Confidence 4679999999999999999999655444 89999 467899999999987664444455
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+||||++ +++.++++. ..+++..+..++.|+++||+|||
T Consensus 82 ~~~lv~e~~~-~~l~~~~~~-----~~l~~~~~~~i~~ql~~aL~~LH 123 (336)
T cd07849 82 DVYIVQELME-TDLYKLIKT-----QHLSNDHIQYFLYQILRGLKYIH 123 (336)
T ss_pred eEEEEehhcc-cCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999997 588888753 34899999999999999999998
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-11 Score=123.53 Aligned_cols=208 Identities=22% Similarity=0.197 Sum_probs=116.9
Q ss_pred cccccCCccccCCCcCcccCC--ccccCCCcCcEEEcccCCCCCCCc--ccccCCCCCCEEEcccccCcccCCcc-CCCC
Q 040849 120 GYLFRLQFLWLDNNTFGGQIP--DNISHCVNLESLRLGFNELVGKVP--RKLGSLSKLRTLAVHYNNLSGQIPSS-FGNL 194 (809)
Q Consensus 120 ~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l 194 (809)
.++.+|+...|.+.... ..+ .....|++++.||||.|-+....| .....|++|+.|+|+.|++.-...+. -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45677777777777665 222 245667788888888877664322 22456778888888888775222211 1346
Q ss_pred CCCCEEEcccCccccc-CcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEE
Q 040849 195 SSLEVLSASANQFVGQ-IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERL 273 (809)
Q Consensus 195 ~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 273 (809)
+.|+.|.|++|.++.. +...+..+++|+.|+|..|............+..|+.|+|++|++...-.......+|.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 6777777777777632 222345567777777777753333344445566677777777766522211111256667777
Q ss_pred EccCccccccC-Ccc-----cccCCCCceEecCCCccee--eCCCCCCCCCCcEEEeccccCC
Q 040849 274 NLGENQFTGPI-PAS-----ISNASHLMRLTIPINGFSG--KVPSFGNLHKLQWVSISMNHLG 328 (809)
Q Consensus 274 ~Ls~N~l~~~~-p~~-----l~~l~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~Ls~n~l~ 328 (809)
+++.+.+...- |+. ....++|++|++..|++.. .+..+..+++|+.|.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 77766665432 222 2334555666666555532 1112334444555555555554
|
|
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.6e-10 Score=119.73 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=78.8
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc-cC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD-FQ 758 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~-~~ 758 (809)
..++|+..+.||+|+||.||+|..... ++.|||| +.++||||+++++++.... ..
T Consensus 19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 96 (359)
T cd07876 19 VLKRYQQLKPIGSGAQGIVCAAFDTVL--GINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLE 96 (359)
T ss_pred hhhceEEEEEeecCCCEEEEEEEEcCC--CceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcc
Confidence 346799999999999999999986544 3489999 4679999999999875421 11
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.....|+||||+++ ++.+.++. .+++.++..++.|+++||+|||
T Consensus 97 ~~~~~~lv~e~~~~-~l~~~~~~------~~~~~~~~~~~~qi~~~L~~LH 140 (359)
T cd07876 97 EFQDVYLVMELMDA-NLCQVIHM------ELDHERMSYLLYQMLCGIKHLH 140 (359)
T ss_pred ccceeEEEEeCCCc-CHHHHHhc------cCCHHHHHHHHHHHHHHHHHHH
Confidence 22457999999975 57666642 3788999999999999999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.9e-10 Score=117.75 Aligned_cols=101 Identities=26% Similarity=0.392 Sum_probs=81.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc---
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF--- 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~--- 757 (809)
.++|+..+.||+|+||.||+|+.... ++.|||| ++++||||++++++|.....
T Consensus 11 ~~~y~~~~~lg~g~~~~v~~~~~~~~--~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (310)
T cd07865 11 VSKYEKLAKIGQGTFGEVFKARHKKT--KQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYN 88 (310)
T ss_pred hhheEEEEEeecCCCEEEEEEEECCC--CcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEeccccccc
Confidence 35688999999999999999996554 3489998 46789999999999865321
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
......++||||++ +++.+++.... ..+++.++..++.|++.||+|||
T Consensus 89 ~~~~~~~lv~e~~~-~~l~~~l~~~~---~~~~~~~~~~i~~qi~~al~~lH 136 (310)
T cd07865 89 RYKGSFYLVFEFCE-HDLAGLLSNKN---VKFTLSEIKKVMKMLLNGLYYIH 136 (310)
T ss_pred CCCceEEEEEcCCC-cCHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 11245699999997 58888886432 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-10 Score=117.92 Aligned_cols=94 Identities=29% Similarity=0.454 Sum_probs=79.8
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCC-CcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIR-HRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~-H~niv~l~~~~~~~~~~~~~~~ 763 (809)
|+..+.||+|+||+||+|+..+.+. .|||| ++++ ||||+++++++.. ++..
T Consensus 1 y~~~~~ig~g~~g~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~-----~~~~ 73 (283)
T cd07830 1 YKVIKQLGDGTFGSVYLARNKETGE--LVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRE-----NDEL 73 (283)
T ss_pred CeeheeeccCCceEEEEEEECCCCc--EEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhc-----CCcE
Confidence 5667899999999999999765434 89998 3566 9999999998765 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+ +|+|.+++.... ...++|.++..++.|+++||+|||
T Consensus 74 ~lv~e~~-~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~Lh 116 (283)
T cd07830 74 YFVFEYM-EGNLYQLMKDRK--GKPFSESVIRSIIYQILQGLAHIH 116 (283)
T ss_pred EEEEecC-CCCHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 889999987542 245899999999999999999998
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-10 Score=116.30 Aligned_cols=87 Identities=23% Similarity=0.330 Sum_probs=75.4
Q ss_pred eccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 712 IGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 712 ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
||+|+||.||+++....+. .||+| +.++||||+++++.+.. ++..|+|||
T Consensus 1 lg~g~~~~vy~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~~~lv~e 73 (265)
T cd05579 1 ISKGAYGRVFLAKKKSTGD--IYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQG-----KKNLYLVME 73 (265)
T ss_pred CCCCCceEEEEEEECCCCC--EEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheec-----CcEEEEEEe
Confidence 6899999999999765434 89999 35789999999988654 778999999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++|+|.+++++. ..+++..+..++.|+++||+|||
T Consensus 74 ~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~L~~lH 110 (265)
T cd05579 74 YLPGGDLASLLENV----GSLDEDVARIYIAEIVLALEYLH 110 (265)
T ss_pred cCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999753 25899999999999999999998
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=114.41 Aligned_cols=104 Identities=31% Similarity=0.517 Sum_probs=79.9
Q ss_pred ccccceeccCCceeEEEEEECC-CCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC-c
Q 040849 706 FSLENLIGAGSFGSVYKGILNH-DDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN-D 761 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~-~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~-~ 761 (809)
|...+.||+|+||.||+|.+.. ++.++.|||| +.++||||+++++++......+. .
T Consensus 1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 80 (273)
T cd05074 1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP 80 (273)
T ss_pred CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence 4567899999999999998653 2345689998 46899999999998764211111 2
Q ss_pred eEEEEEeccCCCChhhhhcCCC--CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKP--EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~--~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++++||+++|+|.+++...+ .....+++..+..++.|++.|++|||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH 130 (273)
T cd05074 81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS 130 (273)
T ss_pred ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998875322 12235789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=112.84 Aligned_cols=89 Identities=36% Similarity=0.622 Sum_probs=77.0
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
++||+|+||.||+|...+ +. .||+| +.++||||+++++++.. ....++|||
T Consensus 1 ~~lg~g~~g~v~~~~~~~-~~--~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~~v~e 72 (251)
T cd05041 1 EKIGKGNFGDVYKGVLKG-NT--EVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQ-----KQPIYIVME 72 (251)
T ss_pred CccccCCCceEEEEEEeC-CC--cEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEec-----CCCeEEEEE
Confidence 468999999999999765 33 79998 46789999999999765 677999999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++++|.++++... ..+++..+..++.|+++|++|||
T Consensus 73 ~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~lH 110 (251)
T cd05041 73 LVPGGSLLTFLRKKK---NRLTVKKLLQMSLDAAAGMEYLE 110 (251)
T ss_pred cCCCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999997542 35789999999999999999998
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.6e-10 Score=115.79 Aligned_cols=94 Identities=24% Similarity=0.429 Sum_probs=79.9
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
|+..+.||+|++|.||+|.....+. .||+| +.++||||+++++++.. ++..
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~-----~~~~ 73 (283)
T cd07835 1 YQKVEKIGEGTYGVVYKARDKLTGE--IVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHS-----ENKL 73 (283)
T ss_pred CchheEecCCCCeEEEEEEEcCCCC--EEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheecc-----CCeE
Confidence 5667899999999999999765544 89998 35789999999999765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+||||++ ++|.+++.... ...+++..+..++.|+++||+|||
T Consensus 74 ~iv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~L~~lH 116 (283)
T cd07835 74 YLVFEFLD-LDLKKYMDSSP--LTGLDPPLIKSYLYQLLQGIAYCH 116 (283)
T ss_pred EEEEeccC-cCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999995 69999987543 245899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.1e-10 Score=119.98 Aligned_cols=100 Identities=18% Similarity=0.286 Sum_probs=81.0
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc-C
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF-Q 758 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~ 758 (809)
..+.|...+.||+|+||+||+|.....+ +.|||| +.++||||+++++++..... .
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 90 (343)
T cd07878 13 VPERYQNLTPVGSGAYGSVCSAYDTRLR--QKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE 90 (343)
T ss_pred hhhhhhhheecccCCCeEEEEEEECCCC--CEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc
Confidence 4567999999999999999999965543 489999 56799999999998653211 1
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.....|+++||+ +++|.++++. ..+++.++..++.|+++||+|||
T Consensus 91 ~~~~~~~~~~~~-~~~l~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH 135 (343)
T cd07878 91 NFNEVYLVTNLM-GADLNNIVKC-----QKLSDEHVQFLIYQLLRGLKYIH 135 (343)
T ss_pred ccCcEEEEeecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 224579999998 7899988753 34899999999999999999998
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=111.59 Aligned_cols=94 Identities=33% Similarity=0.514 Sum_probs=81.9
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|+..+.||+|++|.||+|+....+. .||+| ++++|||++++++++.. ++.
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~ 73 (254)
T cd06627 1 NYQLGDLIGRGAFGVVYKGLNLETGD--FVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIET-----SDS 73 (254)
T ss_pred CceeeeEEcccCCeEEEEEEEcCCCc--EEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEe-----CCE
Confidence 36778999999999999998765444 79998 46789999999998765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++++|.+++... ..+++..+..++.|++.|++|||
T Consensus 74 ~~~v~e~~~~~~L~~~~~~~----~~l~~~~~~~~~~~i~~~l~~lH 116 (254)
T cd06627 74 LYIILEYAENGSLRQIIKKF----GPFPESLVAVYVYQVLQGLAYLH 116 (254)
T ss_pred EEEEEecCCCCcHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999754 45899999999999999999998
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.7e-10 Score=116.26 Aligned_cols=91 Identities=32% Similarity=0.374 Sum_probs=77.9
Q ss_pred cccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 707 SLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 707 ~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
+....||+|+||.||++.....+. .|||| +.++|+||+++++++.. ++..++|
T Consensus 23 ~~~~~lg~g~~g~v~~~~~~~~~~--~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv 95 (292)
T cd06657 23 DNFIKIGEGSTGIVCIATVKSSGK--LVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-----GDELWVV 95 (292)
T ss_pred hhHHHcCCCCCeEEEEEEEcCCCe--EEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEe-----CCEEEEE
Confidence 334679999999999999765434 89998 46789999999998765 7789999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||+++++|.+++... .+++..+..++.|++.|++|||
T Consensus 96 ~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~ql~~~l~~lH 133 (292)
T cd06657 96 MEFLEGGALTDIVTHT-----RMNEEQIAAVCLAVLKALSVLH 133 (292)
T ss_pred EecCCCCcHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988532 3789999999999999999998
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-09 Score=117.83 Aligned_cols=99 Identities=22% Similarity=0.307 Sum_probs=81.7
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~ 756 (809)
+...+++|+..+.||+|+||.||+|.....+. .|||| +.++||||+++++++..
T Consensus 5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-- 80 (328)
T cd07856 5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQ--NVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFIS-- 80 (328)
T ss_pred eeccccceEEEEeecccCCeEEEEEEECCCCC--EEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEec--
Confidence 34567789999999999999999999654434 88988 46789999999998753
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.....++||||+ +++|.++++. ..+++..+..++.|+++||+|||
T Consensus 81 --~~~~~~lv~e~~-~~~L~~~~~~-----~~~~~~~~~~~~~ql~~aL~~LH 125 (328)
T cd07856 81 --PLEDIYFVTELL-GTDLHRLLTS-----RPLEKQFIQYFLYQILRGLKYVH 125 (328)
T ss_pred --CCCcEEEEeehh-ccCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 245689999999 5689988863 23788889999999999999998
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-11 Score=120.24 Aligned_cols=185 Identities=22% Similarity=0.248 Sum_probs=117.8
Q ss_pred ccCCCCCCEEEeeCCeeecccCcC----CcCCCCccEEEcccccCcccC-------------CccccCCCCCcEEeCcCC
Q 040849 414 IGDLHKLQRLGLQGNKFLGEIPSS----IGNLTLLITLSFDKNMLEGSI-------------PSSLGKCQNLILLGLSNN 476 (809)
Q Consensus 414 ~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~-------------p~~l~~l~~L~~L~Ls~N 476 (809)
+.++++|++||||+|-|....+.. +.++..|++|+|.+|.+.-.- ......-+.|+++..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 345566666666666664333332 244566777777776654111 112234467888888888
Q ss_pred cCccc----cCcchhcccCCceEEEccCCcCccc----CCCCccCCCCCCEEEccccccccc----cCccccCCCCCCEE
Q 040849 477 NLTGT----IPTEVIGLSSLSIYLDLSQNQLNGT----LPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQL 544 (809)
Q Consensus 477 ~l~~~----~p~~~~~l~~l~~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L 544 (809)
++... +...+...+.+ ..+.++.|.|... +...|..+++|+.|||.+|-|+.. +...+..++.|+.|
T Consensus 168 rlen~ga~~~A~~~~~~~~l-eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTL-EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccccHHHHHHHHHhcccc-ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 87532 22334445555 6777888876421 223467788888888888888733 34456677888888
Q ss_pred eCcCCccccccchhh-----cCCCCCCEEeCCCCCcccc----cccccccCCCCCeEEccCCcc
Q 040849 545 GMNGNFFQGNIPSSF-----SSLRGIENLDLSRNNLSGR----IPKYFENFLFLQNLNLSFNHF 599 (809)
Q Consensus 545 ~Ls~N~l~~~~p~~~-----~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~l~ls~N~l 599 (809)
+++++.+...-..+| ...++|++|++.+|.++.. +-..+...+.|..|+|++|.+
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888888875433333 2467889999999988632 233455678888899988888
|
|
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.1e-10 Score=115.94 Aligned_cols=96 Identities=23% Similarity=0.327 Sum_probs=78.9
Q ss_pred cccccceeccCCceeEEEEEECCC-CceeEEEEe------------------------cCC-CCcceeeEeeeeeccccC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK------------------------RSI-RHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK------------------------~~l-~H~niv~l~~~~~~~~~~ 758 (809)
+|+..+.||+|+||.||+++.... ..++.|||| ..+ +||||+++++++..
T Consensus 1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~---- 76 (288)
T cd05583 1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQT---- 76 (288)
T ss_pred CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeec----
Confidence 367789999999999999985432 123478888 234 69999999988544
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 77 -~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~ql~~~l~~lH 122 (288)
T cd05583 77 -DTKLHLILDYVNGGELFTHLYQR----EHFTESEVRVYIAEIVLALDHLH 122 (288)
T ss_pred -CCEEEEEEecCCCCcHHHHHhhc----CCcCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998743 35889999999999999999998
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.1e-10 Score=119.71 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=79.5
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc-c
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD-F 757 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~-~ 757 (809)
...++|...+.||+|+||.||+|.... .++.|||| +.++||||+++++++.... .
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 91 (355)
T cd07874 14 TVLKRYQNLKPIGSGAQGIVCAAYDAV--LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSL 91 (355)
T ss_pred hhhhceeEEEEeeecCCEEEEEEEecC--CCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccc
Confidence 345689999999999999999998543 34489999 3578999999999875421 1
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
......|+||||+++ ++.+.+.. .+++.++..++.|+++||+|||
T Consensus 92 ~~~~~~~lv~e~~~~-~l~~~~~~------~l~~~~~~~~~~qi~~aL~~LH 136 (355)
T cd07874 92 EEFQDVYLVMELMDA-NLCQVIQM------ELDHERMSYLLYQMLCGIKHLH 136 (355)
T ss_pred cccceeEEEhhhhcc-cHHHHHhh------cCCHHHHHHHHHHHHHHHHHHH
Confidence 223458999999975 67777652 3789999999999999999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-10 Score=121.28 Aligned_cols=93 Identities=27% Similarity=0.475 Sum_probs=77.5
Q ss_pred ccceeccCCceeEEEEEECCCCceeEEE---Ee---------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 708 LENLIGAGSFGSVYKGILNHDDHETLVA---VK---------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 708 ~~~~ig~G~~g~Vy~~~~~~~~~~~~va---vK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
...+||+|+|-+||||.... ++..|| || +.++|||||++|.++.+. +.+..
T Consensus 44 ~~evLGrGafKtVYka~De~--~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~---~n~~i 118 (632)
T KOG0584|consen 44 FDEVLGRGAFKTVYKAFDEE--EGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDT---DNKTI 118 (632)
T ss_pred hhhhcccccceeeeeccccc--cchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecC---CCcee
Confidence 45789999999999999533 444665 33 689999999999998763 24668
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
-+|+|.|..|+|.+|.++++ .++......||+||++||.|||
T Consensus 119 n~iTEL~TSGtLr~Y~kk~~----~vn~kaik~W~RQILkGL~yLH 160 (632)
T KOG0584|consen 119 NFITELFTSGTLREYRKKHR----RVNIKAIKSWCRQILKGLVYLH 160 (632)
T ss_pred eeeeecccCCcHHHHHHHhc----cCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998763 4778899999999999999999
|
|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.1e-11 Score=125.14 Aligned_cols=97 Identities=25% Similarity=0.366 Sum_probs=80.2
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.+.+.++..+|.|+||+||||.-++.+ ...|.| +.++||+||++++.|+. ++.
T Consensus 31 ~d~WeIiGELGDGAFGKVyKA~nket~--~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~-----enk 103 (1187)
T KOG0579|consen 31 RDHWEIIGELGDGAFGKVYKAVNKETK--LLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYF-----ENK 103 (1187)
T ss_pred HHHHHHHhhhcCccchhhhhhhcccch--hhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhc-----cCc
Confidence 445677788999999999999955432 244444 57789999999998765 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||+.|||+||..+..+-.- ++.++++++..+++|++.||.|||
T Consensus 104 LwiliEFC~GGAVDaimlEL---~r~LtE~QIqvvc~q~ldALn~LH 147 (1187)
T KOG0579|consen 104 LWILIEFCGGGAVDAIMLEL---GRVLTEDQIQVVCYQVLDALNWLH 147 (1187)
T ss_pred eEEEEeecCCchHhHHHHHh---ccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999998887643 356999999999999999999999
|
|
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=114.32 Aligned_cols=95 Identities=28% Similarity=0.425 Sum_probs=79.0
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
|+..+.||+|+||.||+|+..+.+. .||+| +.++|||++++++++... +.+..
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~--~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~---~~~~~ 75 (287)
T cd07840 1 YEKIAQIGEGTYGQVYKARNKKTGE--LVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSK---GKGSI 75 (287)
T ss_pred CeeeEEeccCCCeEEEEEEECCCCe--EEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecC---CCCcE
Confidence 5667899999999999999765434 89998 356899999999997651 12689
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||++ ++|.+++.... ..+++.++..++.|+++||+|||
T Consensus 76 ~lv~e~~~-~~l~~~~~~~~---~~~~~~~~~~i~~~i~~al~~LH 117 (287)
T cd07840 76 YMVFEYMD-HDLTGLLDSPE---VKFTESQIKCYMKQLLEGLQYLH 117 (287)
T ss_pred EEEecccc-ccHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999997 48998887542 46899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=117.47 Aligned_cols=100 Identities=18% Similarity=0.288 Sum_probs=80.5
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc-C
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF-Q 758 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~ 758 (809)
..+.|+..+.||+|+||.||+|.....+. .|||| +.++||||+++++++..... .
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 90 (343)
T cd07880 13 VPDRYRDLKQVGSGAYGTVCSALDRRTGA--KVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD 90 (343)
T ss_pred cccceEEEEEeeecCCeEEEEEEECCCCc--EEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence 35679999999999999999998654434 89999 46789999999998754211 1
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.....++||||+ +++|.+++.. ..+++..+..++.|+++||+|||
T Consensus 91 ~~~~~~lv~e~~-~~~l~~~~~~-----~~l~~~~~~~i~~qi~~al~~LH 135 (343)
T cd07880 91 RFHDFYLVMPFM-GTDLGKLMKH-----EKLSEDRIQFLVYQMLKGLKYIH 135 (343)
T ss_pred ccceEEEEEecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 113468999999 7799988863 34899999999999999999998
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=113.58 Aligned_cols=92 Identities=30% Similarity=0.361 Sum_probs=79.1
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
|...+.||+|++|.||++.....+. .||+| +.++||||+++++++.. ++..++
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~-----~~~~~~ 93 (285)
T cd06648 21 LDNFVKIGEGSTGIVCIATDKSTGR--QVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLV-----GDELWV 93 (285)
T ss_pred hhcceEeccCCCeEEEEEEECCCCC--EEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEc-----CCeEEE
Confidence 5556799999999999999655434 78888 45789999999998664 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+||+++++|.+++.. ..+++.++..++.|++.||+|||
T Consensus 94 v~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~ql~~~l~~lH 132 (285)
T cd06648 94 VMEFLEGGALTDIVTH-----TRMNEEQIATVCLAVLKALSFLH 132 (285)
T ss_pred EEeccCCCCHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 24889999999999999999998
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=113.46 Aligned_cols=99 Identities=24% Similarity=0.385 Sum_probs=79.2
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
|+..+.||+|+||.||+|+.+..+. .||+| +.++||||+++++++........
T Consensus 1 y~~~~~l~~g~~~~v~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~ 78 (287)
T cd07838 1 YEELAEIGEGAYGTVYKARDLNTGR--FVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRE 78 (287)
T ss_pred CeEEEEecccCceEEEEEEECCCCC--EEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCC
Confidence 5677899999999999999765434 89998 23469999999999876322222
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...+++|||++ ++|.+++.... ...++|.++..++.|+++||+|||
T Consensus 79 ~~~~l~~e~~~-~~l~~~l~~~~--~~~l~~~~~~~~~~~i~~al~~LH 124 (287)
T cd07838 79 LKLTLVFEHVD-QDLATYLSKCP--KPGLPPETIKDLMRQLLRGVDFLH 124 (287)
T ss_pred ceeEEEehhcc-cCHHHHHHHcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34899999997 58999887542 235899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=118.24 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=80.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
..|...+.||+|+||+||+|+.... ++.|||| +.++||||+++++++.....+...
T Consensus 5 ~~y~~~~~lg~G~~~~vy~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 82 (337)
T cd07858 5 TKYVPIKPIGRGAYGIVCSAKNSET--NEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFN 82 (337)
T ss_pred cceeEEEEeccCCCeEEEEEEecCC--CCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccC
Confidence 4688899999999999999996544 3489998 357899999999987653222234
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+||||+. ++|.+++... ..+++..+..++.|++.||+|||
T Consensus 83 ~~~lv~e~~~-~~L~~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH 125 (337)
T cd07858 83 DVYIVYELMD-TDLHQIIRSS----QTLSDDHCQYFLYQLLRGLKYIH 125 (337)
T ss_pred cEEEEEeCCC-CCHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999996 7899888643 45899999999999999999998
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.3e-10 Score=118.74 Aligned_cols=96 Identities=24% Similarity=0.441 Sum_probs=79.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCC-CCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSI-RHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l-~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+.||+|+||.||+|.....+. .|||| +.+ +||||+++++++.. .+
T Consensus 6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~--~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~---~~ 80 (337)
T cd07852 6 LRKYEILQKLGKGAYGIVWKAIDRRTKE--VVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKA---EN 80 (337)
T ss_pred hhHHHHhHhhcCCCCeeEEEEEEcCCCe--EEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeecc---CC
Confidence 4578888999999999999999765433 88988 356 99999999998754 22
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...|+||||++ ++|.++++.. .++|..+..++.|+++||+|||
T Consensus 81 ~~~~~lv~e~~~-~~L~~~~~~~-----~~~~~~~~~i~~qi~~~L~~LH 124 (337)
T cd07852 81 DKDIYLVFEYME-TDLHAVIRAN-----ILEDVHKRYIMYQLLKALKYIH 124 (337)
T ss_pred CceEEEEecccc-cCHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999997 5999988642 5789999999999999999998
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=109.54 Aligned_cols=95 Identities=32% Similarity=0.456 Sum_probs=82.3
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
+|+..+.||+|++|.||++.....+. .|++| +.++|+||+++++++.. +...+
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~ 73 (253)
T cd05122 1 LFEILEKIGKGGFGEVYKARHKRTGK--EVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLK-----KDELW 73 (253)
T ss_pred CceeeeeeccCCceEEEEEEECCCCc--EEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CCeEE
Confidence 47778999999999999999765444 78888 46789999999998765 67899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++||+++++|.+++.... ..+++.++..++.|+++|++|||
T Consensus 74 l~~e~~~~~~L~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lh 115 (253)
T cd05122 74 IVMEFCSGGSLKDLLKSTN---QTLTESQIAYVCKELLKGLEYLH 115 (253)
T ss_pred EEEecCCCCcHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987542 45899999999999999999998
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-10 Score=130.75 Aligned_cols=102 Identities=25% Similarity=0.280 Sum_probs=84.9
Q ss_pred HHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeee
Q 040849 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 697 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~ 753 (809)
.++....++|.+.++||+|+||.|..++++.. ++.||+| ..-..+.||+++.+
T Consensus 68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t--~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyA-- 143 (1317)
T KOG0612|consen 68 KELRLKAEDFEILKVIGRGAFGEVALVRHKST--EKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYA-- 143 (1317)
T ss_pred HHHhCCHHhhHHHHHhcccccceeEEEEeecc--ccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHH--
Confidence 44555678999999999999999999997654 4499999 12246789998877
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+|++++|+|||||+||||-.++.+.. ++++..+..|+..|.-||+-+|
T Consensus 144 ---FQD~~~LYlVMdY~pGGDlltLlSk~~----~~pE~~ArFY~aEiVlAldslH 192 (1317)
T KOG0612|consen 144 ---FQDERYLYLVMDYMPGGDLLTLLSKFD----RLPEDWARFYTAEIVLALDSLH 192 (1317)
T ss_pred ---hcCccceEEEEecccCchHHHHHhhcC----CChHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999997542 5888889999999999988777
|
|
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=118.46 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=79.3
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc-cC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD-FQ 758 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~-~~ 758 (809)
..++|...+.||+|+||.||+|..... ++.|||| +.++||||+++++++.... ..
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~ 99 (364)
T cd07875 22 VLKRYQNLKPIGSGAQGIVCAAYDAIL--ERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLE 99 (364)
T ss_pred hhcceeEEEEeecCCCeEEEEEEECCC--CcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccc
Confidence 356799999999999999999996544 3489999 4578999999999865421 12
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+....|+||||+++ +|.+++.. .+++.++..++.|+++||+|||
T Consensus 100 ~~~~~~lv~e~~~~-~l~~~~~~------~~~~~~~~~~~~qi~~aL~~LH 143 (364)
T cd07875 100 EFQDVYIVMELMDA-NLCQVIQM------ELDHERMSYLLYQMLCGIKHLH 143 (364)
T ss_pred ccCeEEEEEeCCCC-CHHHHHHh------cCCHHHHHHHHHHHHHHHHHHh
Confidence 23468999999975 77777752 3789999999999999999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.7e-10 Score=118.41 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=81.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||.||+|.....+. .||+| +.++||||+++++++.... .+..
T Consensus 5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~--~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~~ 81 (334)
T cd07855 5 SRYKPIENIGSGAYGVVCSAIDTRSGK--KVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPG-ADFK 81 (334)
T ss_pred hceeeeeeeecCCCeEEEEEEEcCCCC--EEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccC-CCCc
Confidence 678889999999999999999665444 89999 4678999999999865421 2345
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||++ |+|.++++.. ..+++..+..++.|+++||+|||
T Consensus 82 ~~~lv~e~~~-~~l~~~~~~~----~~~~~~~~~~i~~qi~~aL~~LH 124 (334)
T cd07855 82 DVYVVMDLME-SDLHHIIHSD----QPLTEEHIRYFLYQLLRGLKYIH 124 (334)
T ss_pred eEEEEEehhh-hhHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999996 6899998743 34899999999999999999998
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.5e-10 Score=122.12 Aligned_cols=108 Identities=21% Similarity=0.346 Sum_probs=77.5
Q ss_pred hcccccccceeccCCceeEEEEEECC--------------CCceeEEEEec-----------------------------
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNH--------------DDHETLVAVKR----------------------------- 738 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~--------------~~~~~~vavK~----------------------------- 738 (809)
..++|+..++||+|+||+||+|.... ...++.||||+
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE 222 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE 222 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence 46789999999999999999997521 11234799992
Q ss_pred -----CCCCcc-----eeeEeeeeecccc---CCCceEEEEEeccCCCChhhhhcCCCC--------------------C
Q 040849 739 -----SIRHRN-----LVKIITSCASVDF---QGNDFKALVYEFMVNGSLEEWLHPKPE--------------------A 785 (809)
Q Consensus 739 -----~l~H~n-----iv~l~~~~~~~~~---~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------------------~ 785 (809)
+++|.+ +++++++|..... ...+..|+||||+++|+|.++++.... .
T Consensus 223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~ 302 (507)
T PLN03224 223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP 302 (507)
T ss_pred HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence 123333 3667777653210 113568999999999999999975321 1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 786 PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 786 ~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++|..+..++.|+++||+|||
T Consensus 303 ~~~~~~~~~~~i~~ql~~aL~~lH 326 (507)
T PLN03224 303 QDKRDINVIKGVMRQVLTGLRKLH 326 (507)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH
Confidence 123578889999999999999998
|
|
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=122.41 Aligned_cols=101 Identities=23% Similarity=0.326 Sum_probs=80.6
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cC------CCCcceeeEeeee
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RS------IRHRNLVKIITSC 752 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~------l~H~niv~l~~~~ 752 (809)
++...+++|...+.||+|+||+||+|.....+ +.|||| +. .+|.+++++++++
T Consensus 123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~--~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~ 200 (467)
T PTZ00284 123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRK--EYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF 200 (467)
T ss_pred ccccCCCcEEEEEEEEeccCEEEEEEEEcCCC--eEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence 33445678999999999999999999965543 489999 11 2456689998886
Q ss_pred eccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 753 ASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 753 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.. +....++||||+ +|+|.+++.++ ..+++.++..|+.||+.||+|||
T Consensus 201 ~~----~~~~~~iv~~~~-g~~l~~~l~~~----~~l~~~~~~~i~~qi~~aL~yLH 248 (467)
T PTZ00284 201 QN----ETGHMCIVMPKY-GPCLLDWIMKH----GPFSHRHLAQIIFQTGVALDYFH 248 (467)
T ss_pred Ec----CCceEEEEEecc-CCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 54 245789999998 77899988744 35899999999999999999999
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-10 Score=112.61 Aligned_cols=96 Identities=29% Similarity=0.379 Sum_probs=82.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+++|+|.||+|..++- +.+++.||+| +..+||.+..+... |+.
T Consensus 167 m~dFdfLKvLGkGTFGKVIL~rE--Kat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYs-----FQt 239 (516)
T KOG0690|consen 167 MEDFDFLKVLGKGTFGKVILCRE--KATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYS-----FQT 239 (516)
T ss_pred cchhhHHHHhcCCccceEEEEee--cccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhh-----hcc
Confidence 46799999999999999999984 4456699999 46789999887765 455
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+.++.||||+.||.|+-.+.+. +.++++++..+-.+|..||.|||
T Consensus 240 ~drlCFVMeyanGGeLf~HLsre----r~FsE~RtRFYGaEIvsAL~YLH 285 (516)
T KOG0690|consen 240 QDRLCFVMEYANGGELFFHLSRE----RVFSEDRTRFYGAEIVSALGYLH 285 (516)
T ss_pred CceEEEEEEEccCceEeeehhhh----hcccchhhhhhhHHHHHHhhhhh
Confidence 88999999999999999888754 45899999999999999999999
|
|
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=114.78 Aligned_cols=93 Identities=29% Similarity=0.429 Sum_probs=78.0
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|...+.||+|+||+||+|+....+. .||+| +.++|||++++++++.. ++.
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~~~--~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 95 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHTNE--VVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLK-----EHT 95 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCCCc--EEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCE
Confidence 5556789999999999999655444 88988 46789999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+||||++ |++.+++.... ..++|.++..++.|++.|++|||
T Consensus 96 ~~lv~e~~~-~~l~~~l~~~~---~~l~~~~~~~~~~qi~~al~~LH 138 (313)
T cd06633 96 AWLVMEYCL-GSASDLLEVHK---KPLQEVEIAAITHGALQGLAYLH 138 (313)
T ss_pred EEEEEecCC-CCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999996 67888876432 45899999999999999999998
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-11 Score=115.46 Aligned_cols=128 Identities=22% Similarity=0.208 Sum_probs=67.2
Q ss_pred ccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEc
Q 040849 123 FRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA 202 (809)
Q Consensus 123 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 202 (809)
..|+.||||+|.|+ .+.++..-++.++.|++|+|.+... +.+..|++|++||||+|.++ .+..+=..+.+.++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34555555555554 3444444455555555555555422 22555555555555555554 33333344555555566
Q ss_pred ccCcccccCcccccCCCCccEEEeecCcCCCCc-chhccCCCCCceeccCCcccc
Q 040849 203 SANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEI-PFSIYNLSSLNYFEFPVNQLQ 256 (809)
Q Consensus 203 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~ 256 (809)
++|.+... ..+.++-+|..||+++|+|.... -..+++++-|+++.+.+|.+.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 65555422 33455555566666666554321 234566666666666666665
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-10 Score=119.12 Aligned_cols=216 Identities=21% Similarity=0.177 Sum_probs=111.3
Q ss_pred CCCcCcEEEcccCCCCCCCc-ccccCCCCCCEEEcccccCcccCC--ccCCCCCCCCEEEcccCcccccCcccccCCCCc
Q 040849 145 HCVNLESLRLGFNELVGKVP-RKLGSLSKLRTLAVHYNNLSGQIP--SSFGNLSSLEVLSASANQFVGQIPKTLSQLKRM 221 (809)
Q Consensus 145 ~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 221 (809)
++++|+...|.+........ .....+++++.||||.|-+....+ .....|++|+.|+|+.|++........
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~------ 192 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT------ 192 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc------
Confidence 44555555555554431111 133445555555555554432111 123345555555555555432211111
Q ss_pred cEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCC
Q 040849 222 RFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPI 301 (809)
Q Consensus 222 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 301 (809)
-..+++|+.|.++.|.++-.--.++...+|+|+.|+|..|...........-+..|+.|||++
T Consensus 193 -----------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 193 -----------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred -----------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 013445555555555555322222333567777777777753333334444556677777777
Q ss_pred CcceeeC--CCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccC
Q 040849 302 NGFSGKV--PSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGN 379 (809)
Q Consensus 302 n~l~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~ 379 (809)
|.+-... +..+.++.|+.|+++.+.+..+...+.+... .....++|++|+++.
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~-------------------------kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD-------------------------KTHTFPKLEYLNISE 310 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchh-------------------------hhcccccceeeeccc
Confidence 7665433 3366777777777777766544322111110 111223488888888
Q ss_pred Cccccc-CCccccCCCCCCeeeCCCcccee
Q 040849 380 NQLFGN-IPSGLRNLVNLERLLLEGNQFTG 408 (809)
Q Consensus 380 n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 408 (809)
|++... .-..+..+++|+.|.+..|.++.
T Consensus 311 N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 311 NNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred Cccccccccchhhccchhhhhhcccccccc
Confidence 887531 12345667788888888888863
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-10 Score=78.76 Aligned_cols=40 Identities=53% Similarity=0.953 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCCCCC--CCCCcccccccC
Q 040849 32 ETDQLALLEFKAKVTHDPLEVLSSWNYS--RHFCQWKGVTCS 71 (809)
Q Consensus 32 ~~~~~~ll~~k~~~~~~~~~~l~~W~~~--~~~c~w~gv~c~ 71 (809)
++|++||++||+++..+|.+.+.+|+.. .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 6799999999999986777889999987 699999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-11 Score=119.14 Aligned_cols=157 Identities=24% Similarity=0.300 Sum_probs=84.7
Q ss_pred CcEEEEECCCCCCccc----cCccccCCCCccEEeCCCCCCCc----cCCcc-------ccccccCCccccCCCcCcccC
Q 040849 75 QRVTALLLPSLLLQGS----LSPHIGNLSFLRVLDLKNNSFRN----EIPQE-------IGYLFRLQFLWLDNNTFGGQI 139 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g~----~~~~l~~l~~L~~LdLs~n~l~~----~~p~~-------~~~l~~L~~L~Ls~N~l~~~~ 139 (809)
..++.|+|++|.+... +.+.+.+.+.|+.-++|+- ++| .+|.. +..+++|++||||+|.|.-.-
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 5688888888887653 4456677778888888752 333 34443 344567778888887776433
Q ss_pred Ccc----ccCCCcCcEEEcccCCCCCCCccc-------------ccCCCCCCEEEcccccCccc----CCccCCCCCCCC
Q 040849 140 PDN----ISHCVNLESLRLGFNELVGKVPRK-------------LGSLSKLRTLAVHYNNLSGQ----IPSSFGNLSSLE 198 (809)
Q Consensus 140 p~~----~~~l~~L~~L~Ls~N~l~~~~p~~-------------l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~ 198 (809)
+.. +..+.+|++|.|.+|.+...--.. ..+-++|+++..++|++... +...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 332 345677777777777664211111 22334555555555555321 112234445555
Q ss_pred EEEcccCcccc----cCcccccCCCCccEEEeecCcCC
Q 040849 199 VLSASANQFVG----QIPKTLSQLKRMRFIGFGVNKLS 232 (809)
Q Consensus 199 ~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~ 232 (809)
.+.++.|.|.. .+...|..++.|+.|||..|-++
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 55555555431 11123444444555555444443
|
|
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-09 Score=113.61 Aligned_cols=94 Identities=28% Similarity=0.382 Sum_probs=78.6
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.|+..+.||+|+||.||+|.....+. .||+| +.++|+|++++++++.. +.
T Consensus 16 ~~~~~~~lg~g~~g~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 88 (308)
T cd06634 16 LFSDLREIGHGSFGAVYFARDVRNSE--VVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----EH 88 (308)
T ss_pred HHHHHHheeeCCCEEEEEEEEcCCCc--EEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEc-----CC
Confidence 36667889999999999999765544 78888 46789999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+. |++.+++.... ..+++.++..++.|++.|++|||
T Consensus 89 ~~~lv~e~~~-~~l~~~~~~~~---~~l~~~~~~~~~~~l~~~l~~LH 132 (308)
T cd06634 89 TAWLVMEYCL-GSASDLLEVHK---KPLQEVEIAAVTHGALQGLAYLH 132 (308)
T ss_pred eeEEEEEccC-CCHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999996 68888775432 45889999999999999999998
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-09 Score=112.83 Aligned_cols=96 Identities=24% Similarity=0.268 Sum_probs=79.2
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||+||+|.....+. .|||| +...||||++++++|.. +
T Consensus 14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-----~ 86 (296)
T cd06618 14 LNDLENLGEIGSGTCGQVYKMRFKKTGH--VMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFIT-----D 86 (296)
T ss_pred cchheeeeEeeccCCeEEEEEEECCCCe--EEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeec-----C
Confidence 4568889999999999999999765433 89999 12259999999999865 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...|+||||++ +++.+++.... ..+++..+..++.|+++||+|||
T Consensus 87 ~~~~~v~e~~~-~~l~~l~~~~~---~~l~~~~~~~i~~~i~~~l~~lH 131 (296)
T cd06618 87 SDVFICMELMS-TCLDKLLKRIQ---GPIPEDILGKMTVAIVKALHYLK 131 (296)
T ss_pred CeEEEEeeccC-cCHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999985 57777765432 36899999999999999999998
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-09 Score=114.08 Aligned_cols=106 Identities=17% Similarity=0.313 Sum_probs=84.6
Q ss_pred HHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeee
Q 040849 696 YQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 696 ~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~ 753 (809)
-.++...+++|...+.||+|+||.||+|..... ++.||+| ++++||||+++++++.
T Consensus 9 ~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~ 86 (345)
T cd07877 9 NKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKT--GLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT 86 (345)
T ss_pred HHHHhhccCceEEEEEeeecCCeEEEEEEEcCC--CeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee
Confidence 345566778999999999999999999986544 3489999 4679999999999875
Q ss_pred ccc-cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVD-FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~-~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
... +......++++||+ +++|.++++. ..+++.++..++.|+++||+|||
T Consensus 87 ~~~~~~~~~~~~lv~~~~-~~~L~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH 137 (345)
T cd07877 87 PARSLEEFNDVYLVTHLM-GADLNNIVKC-----QKLTDDHVQFLIYQILRGLKYIH 137 (345)
T ss_pred ecccccccccEEEEehhc-ccCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 421 12234578888887 7899988863 24899999999999999999998
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=113.47 Aligned_cols=93 Identities=25% Similarity=0.410 Sum_probs=77.0
Q ss_pred ccc-ccceeccCCceeEEEEEECCCCceeEEEEe----------------------------------cCCCCcceeeEe
Q 040849 705 GFS-LENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------------RSIRHRNLVKII 749 (809)
Q Consensus 705 ~~~-~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------------~~l~H~niv~l~ 749 (809)
.|. ..+.||+|+||+||+|.....+. .|||| +.++||||++++
T Consensus 9 ry~~~~~~ig~G~~g~vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~ 86 (335)
T PTZ00024 9 RYIQKGAHLGEGTYGKVEKAYDTLTGK--IVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLV 86 (335)
T ss_pred chhhhhhcccCCCceeEEEEEECCCCC--eEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeee
Confidence 454 34779999999999999654434 78888 236799999999
Q ss_pred eeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 750 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++.. ++..++||||++ |+|.+++..+ ..+++..+..++.|++.||+|||
T Consensus 87 ~~~~~-----~~~~~lv~e~~~-~~l~~~l~~~----~~~~~~~~~~~~~ql~~aL~~LH 136 (335)
T PTZ00024 87 DVYVE-----GDFINLVMDIMA-SDLKKVVDRK----IRLTESQVKCILLQILNGLNVLH 136 (335)
T ss_pred EEEec-----CCcEEEEEeccc-cCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99765 678999999997 6999998643 34889999999999999999998
|
|
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-09 Score=115.02 Aligned_cols=98 Identities=23% Similarity=0.297 Sum_probs=78.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccc-------
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVD------- 756 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~------- 756 (809)
.+|...+.||+|+||.||+|+....+. .||+| +.++||||+++++++....
T Consensus 5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~--~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (342)
T cd07854 5 SRYMDLRPLGCGSNGLVFSAVDSDCDK--RVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDV 82 (342)
T ss_pred cceEEEEEecCCCCEEEEEEEECCCCc--EEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccc
Confidence 568889999999999999999655434 89998 4679999999998754311
Q ss_pred --cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 --FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 --~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+....++||||++ ++|.+++.. ..+++..+..++.|+++||+|||
T Consensus 83 ~~~~~~~~~~lv~e~~~-~~L~~~~~~-----~~l~~~~~~~~~~qi~~aL~~LH 131 (342)
T cd07854 83 GSLTELNSVYIVQEYME-TDLANVLEQ-----GPLSEEHARLFMYQLLRGLKYIH 131 (342)
T ss_pred ccccccceEEEEeeccc-ccHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 111245799999997 589888853 24889999999999999999998
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-09 Score=84.63 Aligned_cols=59 Identities=41% Similarity=0.561 Sum_probs=30.5
Q ss_pred CCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCC
Q 040849 516 NLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNN 574 (809)
Q Consensus 516 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 574 (809)
+|++|++++|+++...+..|.++++|++|++++|.++...|.+|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444455555555555555555554444555555555555555554
|
... |
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=109.48 Aligned_cols=87 Identities=29% Similarity=0.360 Sum_probs=75.4
Q ss_pred eccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCCceEEEEEe
Q 040849 712 IGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 712 ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
||+|+||.||++.....+. .||+| +.++||||+++++.+.. ++..++|||
T Consensus 1 lg~G~~~~v~~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~~v~e 73 (250)
T cd05123 1 LGKGSFGKVLLVRKKDTGK--LYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQT-----EEKLYLVLE 73 (250)
T ss_pred CCCCCceEEEEEEECCCCc--EEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeec-----CCeeEEEEe
Confidence 6999999999999765433 78888 46789999999988654 788999999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++++|.+++... ..+++..+..++.|+++|+.|||
T Consensus 74 ~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~~l~~lh 110 (250)
T cd05123 74 YAPGGELFSHLSKE----GRFSEERARFYAAEIVLALEYLH 110 (250)
T ss_pred cCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999744 35899999999999999999998
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.8e-10 Score=105.82 Aligned_cols=96 Identities=22% Similarity=0.362 Sum_probs=83.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------------cCCCCcceeeEeeeee
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------------~~l~H~niv~l~~~~~ 753 (809)
-..|...+++|+|..++|-++..+.++. .+|+| +-..||+|+++.+++.
T Consensus 16 y~~y~pkeilgrgvss~vrRci~k~t~~--e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye 93 (411)
T KOG0599|consen 16 YAKYEPKEILGRGVSSVVRRCIHKETGK--EFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE 93 (411)
T ss_pred HhhcChHHHhcccchhhhhhhhhccccc--ceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc
Confidence 3568888999999999999998765544 78888 3457999999999965
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. +.++++|+|.|+.|.|++++... ..+++.+..+|++|+.+|++|||
T Consensus 94 s-----~sF~FlVFdl~prGELFDyLts~----VtlSEK~tR~iMrqlfegVeylH 140 (411)
T KOG0599|consen 94 S-----DAFVFLVFDLMPRGELFDYLTSK----VTLSEKETRRIMRQLFEGVEYLH 140 (411)
T ss_pred C-----cchhhhhhhhcccchHHHHhhhh----eeecHHHHHHHHHHHHHHHHHHH
Confidence 4 78899999999999999999744 56899999999999999999998
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-09 Score=112.99 Aligned_cols=98 Identities=21% Similarity=0.343 Sum_probs=82.6
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------------cCCC---CcceeeEe
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------RSIR---HRNLVKII 749 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------~~l~---H~niv~l~ 749 (809)
....+|+..+.+|+|+||+|+.|.++.... .|.|| ..++ |+||+|++
T Consensus 558 ~k~s~yttlq~lG~GAyGkV~lai~K~n~~--eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlL 635 (772)
T KOG1152|consen 558 KKFSDYTTLQPLGEGAYGKVNLAIHKENNY--EVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLL 635 (772)
T ss_pred cccccceeeeeccccccceEEEeeecccce--EEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhh
Confidence 344578999999999999999999877644 89998 2333 99999999
Q ss_pred eeeeccccCCCceEEEEEecc-CCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 750 TSCASVDFQGNDFKALVYEFM-VNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 750 ~~~~~~~~~~~~~~~lv~Ey~-~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++ |+++++.||+||-- ++-+|+++|..+ ..+++.++..|++||+.|+++||
T Consensus 636 df-----FEddd~yyl~te~hg~gIDLFd~IE~k----p~m~E~eAk~IFkQV~agi~hlh 687 (772)
T KOG1152|consen 636 DF-----FEDDDYYYLETEVHGEGIDLFDFIEFK----PRMDEPEAKLIFKQVVAGIKHLH 687 (772)
T ss_pred he-----eecCCeeEEEecCCCCCcchhhhhhcc----CccchHHHHHHHHHHHhcccccc
Confidence 99 55689999999965 345999999865 35899999999999999999999
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-09 Score=84.31 Aligned_cols=61 Identities=41% Similarity=0.543 Sum_probs=58.2
Q ss_pred CCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcc
Q 040849 539 VRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHF 599 (809)
Q Consensus 539 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l 599 (809)
++|++|++++|+++...+++|.++++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988889999999999999999999999999999999999999999986
|
... |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-09 Score=112.73 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=79.9
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc-cC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD-FQ 758 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~-~~ 758 (809)
..+.|+..+.||+|+||+||+|.....+ +.||+| +.++||||+++++++.... +.
T Consensus 14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (353)
T cd07850 14 VLKRYQNLKPIGSGAQGIVCAAYDTVTG--QNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLE 91 (353)
T ss_pred hhcceEEEEEeccCCCEEEEEEEECCCC--CEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcc
Confidence 3467999999999999999999965543 489999 4578999999999875421 12
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+....|+||||++ |+|.+.+.. .+++.++..++.|+++||+|||
T Consensus 92 ~~~~~~lv~e~~~-~~l~~~~~~------~l~~~~~~~~~~ql~~aL~~LH 135 (353)
T cd07850 92 EFQDVYLVMELMD-ANLCQVIQM------DLDHERMSYLLYQMLCGIKHLH 135 (353)
T ss_pred ccCcEEEEEeccC-CCHHHHHhh------cCCHHHHHHHHHHHHHHHHHHH
Confidence 2345799999996 588888752 2789999999999999999998
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-09 Score=111.88 Aligned_cols=93 Identities=26% Similarity=0.438 Sum_probs=79.2
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
|+..+.||+|+||.||+|+....+. .||+| +.++|+||+++++++.. .+..
T Consensus 1 y~~~~~ig~g~~~~vy~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~ 73 (282)
T cd07829 1 YEKLEKLGEGTYGVVYKARDKKTGE--IVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHT-----ERKL 73 (282)
T ss_pred CeeehcccccCcceEEEeeecCCCc--EEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhc-----CCce
Confidence 4566889999999999999765434 89998 45689999999998764 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||++ ++|.+++.+.. ..+++.++..++.|+++||+|||
T Consensus 74 ~~v~e~~~-~~l~~~i~~~~---~~~~~~~~~~~~~~i~~~l~~LH 115 (282)
T cd07829 74 YLVFEYCD-MDLKKYLDKRP---GPLSPNLIKSIMYQLLRGLAYCH 115 (282)
T ss_pred EEEecCcC-cCHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998 59999998542 35899999999999999999998
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.9e-09 Score=111.65 Aligned_cols=101 Identities=22% Similarity=0.346 Sum_probs=80.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc---
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF--- 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~--- 757 (809)
.++|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++.....
T Consensus 7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 84 (311)
T cd07866 7 LRDYEILGKLGEGTFGEVYKARQIKTGR--VVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSK 84 (311)
T ss_pred cccEEEEEEeccCCCEEEEEEEECCCCc--EEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccc
Confidence 4689999999999999999999765444 78888 45789999999998654211
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+....++||||+++ ++.+.+... ...+++.++..++.|+++||+|||
T Consensus 85 ~~~~~~~lv~~~~~~-~l~~~~~~~---~~~~~~~~~~~i~~~l~~al~~lH 132 (311)
T cd07866 85 RKRGSVYMVTPYMDH-DLSGLLENP---SVKLTESQIKCYMLQLLEGINYLH 132 (311)
T ss_pred ccCceEEEEEecCCc-CHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 123468999999975 677777643 245899999999999999999998
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-09 Score=121.86 Aligned_cols=106 Identities=26% Similarity=0.398 Sum_probs=85.3
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCC-----ceeEEEEe----------------------cCCCCcceeeEeee
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDD-----HETLVAVK----------------------RSIRHRNLVKIITS 751 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~-----~~~~vavK----------------------~~l~H~niv~l~~~ 751 (809)
++...++....+.+|+|.||+|++|...... ....|||| ..-+|+|||.++|+
T Consensus 291 ~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~ 370 (609)
T KOG0200|consen 291 WEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGA 370 (609)
T ss_pred eeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheee
Confidence 4455556666779999999999999864321 14579999 23479999999999
Q ss_pred eeccccCCCceEEEEEeccCCCChhhhhcCCC---CC-------C--CCCCHHHHHHHHHHHHHHhhhcC
Q 040849 752 CASVDFQGNDFKALVYEFMVNGSLEEWLHPKP---EA-------P--RNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 752 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~---~~-------~--~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|.. +...++|+||++.|+|.++++.++ .. . ..++..+.+.++.|||.||+||+
T Consensus 371 ~t~-----~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~ 435 (609)
T KOG0200|consen 371 CTQ-----DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA 435 (609)
T ss_pred ecc-----CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh
Confidence 986 678999999999999999999765 00 1 23888999999999999999985
|
|
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.7e-09 Score=110.52 Aligned_cols=96 Identities=24% Similarity=0.212 Sum_probs=75.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCC-CCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSI-RHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|...+.||+|+||.||++.....+. .||+| .++ .|||||++++++.. +.
T Consensus 4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~-----~~ 76 (288)
T cd06616 4 EDLKDLGEIGRGAFGTVNKMLHKPSGT--IMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFR-----EG 76 (288)
T ss_pred HHhHHHHHhCCCCceEEEEEEECCCCC--EEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEec-----CC
Confidence 356667899999999999999765444 89999 244 49999999998764 66
Q ss_pred eEEEEEeccCCCChhhh---hcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEW---LHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~---l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+++|||++. ++.++ +... ....+++..+..++.|+++||+|||
T Consensus 77 ~~~~~~e~~~~-~l~~l~~~~~~~--~~~~l~~~~~~~i~~~i~~~l~~lh 124 (288)
T cd06616 77 DCWICMELMDI-SLDKFYKYVYEV--LKSVIPEEILGKIAVATVKALNYLK 124 (288)
T ss_pred cEEEEEecccC-CHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 78999999874 55443 3222 1245899999999999999999998
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.5e-09 Score=106.45 Aligned_cols=84 Identities=21% Similarity=0.105 Sum_probs=71.8
Q ss_pred CCceeEEEEEECCCCceeEEEEe---------------cCCCCcceeeEeeeeeccccCCCceEEEEEeccCCCChhhhh
Q 040849 715 GSFGSVYKGILNHDDHETLVAVK---------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL 779 (809)
Q Consensus 715 G~~g~Vy~~~~~~~~~~~~vavK---------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l 779 (809)
|.||+||++.....+ +.||+| ....||||+++++++.. .+..++||||+++|+|.+++
T Consensus 4 g~~~~v~~~~~~~~~--~~~~~K~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l 76 (237)
T cd05576 4 GVIDKVLLVMDTRTQ--QTFILKGLRKSSEYSRERLTIIPHCVPNMVCLHKYIVS-----EDSVFLVLQHAEGGKLWSHI 76 (237)
T ss_pred cccceEEEEEEccCC--cEEEEEeecchhhhhhHHHHHHhcCCCceeehhhheec-----CCeEEEEEecCCCCCHHHHH
Confidence 899999999965544 489999 23469999999998654 67899999999999999998
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 780 HPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 780 ~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+. ..+++..+..++.|+++||+|||
T Consensus 77 ~~~----~~l~~~~~~~~~~ql~~~l~~lH 102 (237)
T cd05576 77 SKF----LNIPEECVKRWAAEMVVALDALH 102 (237)
T ss_pred HHh----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 743 34899999999999999999998
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-09 Score=110.42 Aligned_cols=93 Identities=25% Similarity=0.389 Sum_probs=78.6
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
|+..+.||+|++|.||+|....++. .+|+| +.++|+||+++++++.. ++..
T Consensus 1 y~~~~~i~~g~~~~v~~~~~~~~~~--~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~ 73 (283)
T cd05118 1 YQKLGKIGEGTYGVVYKARDKLTGE--IVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRH-----KGDL 73 (283)
T ss_pred CccceeeecCCCceEEEEEcCCCCc--EEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhcc-----CCCE
Confidence 4566889999999999999765444 78998 46789999999998765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++ ++.+++..+. ..+++.++..++.|+++||+|||
T Consensus 74 ~~v~e~~~~-~l~~~l~~~~---~~~~~~~~~~~~~~i~~~l~~LH 115 (283)
T cd05118 74 YLVFEFMDT-DLYKLIKDRQ---RGLPESLIKSYLYQLLQGLAFCH 115 (283)
T ss_pred EEEEeccCC-CHHHHHHhhc---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999975 8888887542 45899999999999999999998
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.7e-09 Score=112.87 Aligned_cols=98 Identities=21% Similarity=0.320 Sum_probs=79.9
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+|...+.||+|+||.||+|+....+. .|||| +.++||||+++++++..........
T Consensus 1 ~y~i~~~ig~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~ 78 (330)
T cd07834 1 RYELLKPIGSGAYGVVCSAVDKRTGR--KVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFND 78 (330)
T ss_pred CceeeeeecCCCCeEEEEEEeCCCCc--EEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccc
Confidence 37788999999999999999765434 89998 4568999999999876521112246
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+||||++ ++|.++++.. ..+++..+..++.|+++||+|||
T Consensus 79 ~~lv~e~~~-~~l~~~l~~~----~~l~~~~~~~i~~~l~~~l~~LH 120 (330)
T cd07834 79 VYIVTELME-TDLHKVIKSP----QPLTDDHIQYFLYQILRGLKYLH 120 (330)
T ss_pred eEEEecchh-hhHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999998 5899998743 36899999999999999999998
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-10 Score=124.98 Aligned_cols=197 Identities=31% Similarity=0.353 Sum_probs=88.0
Q ss_pred ccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCc
Q 040849 390 LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLI 469 (809)
Q Consensus 390 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 469 (809)
+..+.+|+.|++.+|+|.. +...+..+++|++|++++|+|+... .+..++.|+.|++++|.|+.. ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence 3444445555555555542 2222444455555555555554332 133344455555555555422 2333345555
Q ss_pred EEeCcCCcCccccCcc-hhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCC--CCCEEeC
Q 040849 470 LLGLSNNNLTGTIPTE-VIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCV--RLEQLGM 546 (809)
Q Consensus 470 ~L~Ls~N~l~~~~p~~-~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L 546 (809)
.+++++|++...-+ . ...+.++ ..+++.+|.+... ..+..+..+..+++..|.++-..+.. .+. .|+.+++
T Consensus 166 ~l~l~~n~i~~ie~-~~~~~~~~l-~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~--~~~~~~L~~l~l 239 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEN-DELSELISL-EELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN--ELVMLHLRELYL 239 (414)
T ss_pred cccCCcchhhhhhh-hhhhhccch-HHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc--cchhHHHHHHhc
Confidence 55555555542222 1 2333344 3455555554421 12222333334455555554222211 112 2555666
Q ss_pred cCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccc
Q 040849 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 547 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 600 (809)
++|++. .++..+..+..+..||+++|+++..- .+.....+..+....|++.
T Consensus 240 ~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 240 SGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 666655 22244455556666666666655322 1233344555555555544
|
|
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.6e-09 Score=111.79 Aligned_cols=97 Identities=20% Similarity=0.326 Sum_probs=77.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc-CCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF-QGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~~~ 760 (809)
++|...+.||+|+||.||+|+....+. .|||| +.++||||+++++++..... ...
T Consensus 15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~ 92 (342)
T cd07879 15 ERYTSLKQVGSGAYGSVCSAIDKRTGE--KVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEF 92 (342)
T ss_pred cceEEEEEeeecCCeEEEEEEeCCCCc--EEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCC
Confidence 678889999999999999999654434 89998 45789999999998764211 122
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++|+||++. ++.++.. ..+++.++..++.|+++||+|||
T Consensus 93 ~~~~lv~e~~~~-~l~~~~~------~~~~~~~~~~~~~qi~~aL~~LH 134 (342)
T cd07879 93 QDFYLVMPYMQT-DLQKIMG------HPLSEDKVQYLVYQMLCGLKYIH 134 (342)
T ss_pred ceEEEEeccccc-CHHHHHc------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 457999999964 7776653 24889999999999999999998
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-09 Score=110.06 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=83.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.+.|..-++||+||||.||-++.+.. +++||.| .++..+.||.+-.++. +
T Consensus 184 ~n~F~~~RvlGkGGFGEV~acqvraT--GKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfe-----T 256 (591)
T KOG0986|consen 184 KNTFRVYRVLGKGGFGEVCACQVRAT--GKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFE-----T 256 (591)
T ss_pred ccceeeeEEEecccccceeEEEEecc--hhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeec-----C
Confidence 34578889999999999999996654 4599998 4678899998877644 4
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+.+++|+..|.||||.-+|.+.+. ..+++++++.||.+|+.||++||
T Consensus 257 kd~LClVLtlMNGGDLkfHiyn~g~--~gF~e~ra~FYAAEi~cGLehlH 304 (591)
T KOG0986|consen 257 KDALCLVLTLMNGGDLKFHIYNHGN--PGFDEQRARFYAAEIICGLEHLH 304 (591)
T ss_pred CCceEEEEEeecCCceeEEeeccCC--CCCchHHHHHHHHHHHhhHHHHH
Confidence 8899999999999999999998753 45999999999999999999998
|
|
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-09 Score=113.62 Aligned_cols=99 Identities=17% Similarity=0.296 Sum_probs=80.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc-CC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF-QG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~~ 759 (809)
.++|+..+.||+|+||.||+|+...++. .|||| +.++||||+++++++..... ..
T Consensus 14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 91 (343)
T cd07851 14 PDRYQNLSPVGSGAYGQVCSAFDTKTGR--KVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED 91 (343)
T ss_pred cCceEEEEEeccCCceEEEEEEECCCCc--EEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence 4678899999999999999999765544 89998 46789999999987654111 11
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++|+||+ +++|.+++.. ..+++.++..++.|+++||+|||
T Consensus 92 ~~~~~lv~e~~-~~~L~~~~~~-----~~l~~~~~~~~~~ql~~aL~~LH 135 (343)
T cd07851 92 FQDVYLVTHLM-GADLNNIVKC-----QKLSDDHIQFLVYQILRGLKYIH 135 (343)
T ss_pred cccEEEEEecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 23489999999 6799999864 34899999999999999999998
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-09 Score=123.44 Aligned_cols=126 Identities=29% Similarity=0.389 Sum_probs=90.7
Q ss_pred cEEEEECCCCCC-ccccCc-cccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEE
Q 040849 76 RVTALLLPSLLL-QGSLSP-HIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLR 153 (809)
Q Consensus 76 ~v~~l~l~~~~l-~g~~~~-~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 153 (809)
.++.|-+.++.. -..++. .|..++.|++|||++|.=-+.+|..++.|-+||+|+|++..++ .+|..+.+|+.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 455555555541 222333 3667899999999988766688999999999999999999988 7888899999999999
Q ss_pred cccCCCCCCCcccccCCCCCCEEEcccccC--cccCCccCCCCCCCCEEEc
Q 040849 154 LGFNELVGKVPRKLGSLSKLRTLAVHYNNL--SGQIPSSFGNLSSLEVLSA 202 (809)
Q Consensus 154 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~L 202 (809)
+..+.-...+|.....|.+||+|.+..-.. +...-..+.++.+|+.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 988876666677777799999998866542 2222333455555555554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-10 Score=123.12 Aligned_cols=197 Identities=24% Similarity=0.249 Sum_probs=82.2
Q ss_pred cccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEE
Q 040849 122 LFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLS 201 (809)
Q Consensus 122 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 201 (809)
+..++.+++..|.+.. +-..+..+++|+.|++.+|++... ...+..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3444444444444442 222244444555555555554422 111444455555555555554221 233344455555
Q ss_pred cccCcccccCcccccCCCCccEEEeecCcCCCCcc-hhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccc
Q 040849 202 ASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIP-FSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280 (809)
Q Consensus 202 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l 280 (809)
+++|.++.. ..+..++.|+.+++++|.+....+ . ...+.+++.+++..|.+...-... .+..+..+++..|.+
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~---~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD---LLKKLVLLSLLDNKI 220 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH---HHHHHHHhhcccccc
Confidence 555555422 233334455555555555443322 1 334444555555555443111111 122233334555554
Q ss_pred cccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCC
Q 040849 281 TGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLG 328 (809)
Q Consensus 281 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~ 328 (809)
+..-+.....+.+|+.+++++|++......+..+..+..+++..|.+.
T Consensus 221 ~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 221 SKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eeccCcccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 422111110011245555555555432223444445555555555544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-09 Score=127.00 Aligned_cols=132 Identities=25% Similarity=0.318 Sum_probs=97.0
Q ss_pred cCCCCccEEeCCCCCCCccCCccccccccCCccccCCCc--CcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCC
Q 040849 96 GNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNT--FGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKL 173 (809)
Q Consensus 96 ~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 173 (809)
.+....+...+-+|.+. .++... ..++|++|-+..|. +....++.|..++.|++|||++|.--+.+|..++.|-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34466777777777765 233332 23468888888886 443444457778888888888887667888888888888
Q ss_pred CEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCc
Q 040849 174 RTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNK 230 (809)
Q Consensus 174 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 230 (809)
|+|+|++..++ .+|..+++|+.|.+|++..+.-...+|.....|++|++|.+....
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88888888888 788888888888888888877665667777778888888876554
|
|
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9e-10 Score=127.13 Aligned_cols=96 Identities=28% Similarity=0.411 Sum_probs=79.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+-++.....||.|.||+||-|.-.+.+. ..||| ..++|||+|++||+-.. +
T Consensus 1234 ~~rWqrg~~Ig~G~fG~VYtavN~~tGe--llAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvH-----R 1306 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDTGE--LLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVH-----R 1306 (1509)
T ss_pred eeeeccccccCCcceeeeEEeecCCccc--hhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeec-----H
Confidence 3345667899999999999999655444 78888 46899999999998554 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.++|.||||++|+|.+.++.. ...++.....+..|++.|++|||
T Consensus 1307 ekv~IFMEyC~~GsLa~ll~~g----ri~dE~vt~vyt~qll~gla~LH 1351 (1509)
T KOG4645|consen 1307 EKVYIFMEYCEGGSLASLLEHG----RIEDEMVTRVYTKQLLEGLAYLH 1351 (1509)
T ss_pred HHHHHHHHHhccCcHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999743 34667777889999999999998
|
|
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-09 Score=110.79 Aligned_cols=90 Identities=31% Similarity=0.327 Sum_probs=71.5
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
.+.+|.|+++.||+++ .. ++.|||| +.++||||+++++++.. .+..+++
T Consensus 7 ~~~~~~~~~v~~~~~~--~~--~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~-----~~~~~~~ 77 (314)
T cd08216 7 GKCFEDLMIVHLAKHK--PT--NTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIV-----DSELYVV 77 (314)
T ss_pred hHhhcCCceEEEEEec--CC--CCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeec-----CCeEEEE
Confidence 3445555666666655 33 3389999 46789999999998665 6789999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||+++|+|.++++... ...+++..+..++.|+++||+|||
T Consensus 78 ~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~LH 118 (314)
T cd08216 78 SPLMAYGSCEDLLKTHF--PEGLPELAIAFILKDVLNALDYIH 118 (314)
T ss_pred EeccCCCCHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998542 235889999999999999999998
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-08 Score=108.83 Aligned_cols=99 Identities=20% Similarity=0.255 Sum_probs=78.2
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCC-CCcceeeEeeeeeccccCCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSI-RHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l-~H~niv~l~~~~~~~~~~~~~ 761 (809)
+|+..+.||+|+||.||++.......+..||+| +++ +||||+++++++... ..+..
T Consensus 1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-~~~~~ 79 (332)
T cd07857 1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVF-PGNFN 79 (332)
T ss_pred CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeec-cccCC
Confidence 367789999999999999997654124489999 234 599999999976531 12235
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+++||++ ++|.+++... ..+++.++..++.|++.||+|||
T Consensus 80 ~~~~~~e~~~-~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 122 (332)
T cd07857 80 ELYLYEELME-ADLHQIIRSG----QPLTDAHFQSFIYQILCGLKYIH 122 (332)
T ss_pred cEEEEEeccc-CCHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 5889999996 6899998643 45899999999999999999999
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=107.18 Aligned_cols=91 Identities=24% Similarity=0.368 Sum_probs=75.6
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
.+++|+|.||+||-|..+.. ++.|||| +.++||.||.+...|.+ .+.+++|
T Consensus 569 devLGSGQFG~VYgg~hRkt--GrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET-----~ervFVV 641 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKT--GRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFET-----PERVFVV 641 (888)
T ss_pred HhhccCCcceeeecceeccc--CceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecC-----CceEEEE
Confidence 47899999999999997654 4599999 57899999999887654 7889999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||-+. ||..+.|-.. ....+++.....++.||+.||.|||
T Consensus 642 MEKl~-GDMLEMILSs--EkgRL~er~TkFlvtQIL~ALr~LH 681 (888)
T KOG4236|consen 642 MEKLH-GDMLEMILSS--EKGRLPERITKFLVTQILVALRYLH 681 (888)
T ss_pred ehhhc-chHHHHHHHh--hcccchHHHHHHHHHHHHHHHHHhh
Confidence 99995 5666666543 2356899888999999999999999
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=108.36 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=65.1
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
..+.|...+.||+|+||+||+|..... .++.|||| +.++|+|+|+.+..
T Consensus 16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~-~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~----- 89 (365)
T PRK09188 16 LSARFVETAVLKRDVFSTVERGYFAGD-PGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA----- 89 (365)
T ss_pred ccCCceEccEEeecCcEEEEEEEEcCC-CCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE-----
Confidence 446799999999999999999987542 22367887 35679999853322
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++++|.. .... . ...++.|+++||+|||
T Consensus 90 ---~~~~~LVmE~~~G~~L~~-~~~~-------~---~~~~~~~i~~aL~~lH 128 (365)
T PRK09188 90 ---TGKDGLVRGWTEGVPLHL-ARPH-------G---DPAWFRSAHRALRDLH 128 (365)
T ss_pred ---cCCcEEEEEccCCCCHHH-hCcc-------c---hHHHHHHHHHHHHHHH
Confidence 234799999999999973 2111 1 1457899999999999
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-09 Score=109.35 Aligned_cols=97 Identities=24% Similarity=0.296 Sum_probs=80.4
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cC-----CCCcceeeEeeeeecccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RS-----IRHRNLVKIITSCASVDF 757 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~-----l~H~niv~l~~~~~~~~~ 757 (809)
...+|....+||+|+||+|..|+.+.. ...+||| ++ =+-|.+|+++.++
T Consensus 347 ~~tDFnFl~VlGKGSFGKVlLaerkgt--dELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScF----- 419 (683)
T KOG0696|consen 347 KATDFNFLMVLGKGSFGKVLLAERKGT--DELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCF----- 419 (683)
T ss_pred eecccceEEEeccCccceeeeecccCc--chhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHh-----
Confidence 345799999999999999999996544 3489998 11 1568888888874
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.-+.+|.||||+.||+|.-.|++- .++.++.+..+|.+||-||-|||
T Consensus 420 QTmDRLyFVMEyvnGGDLMyhiQQ~----GkFKEp~AvFYAaEiaigLFFLh 467 (683)
T KOG0696|consen 420 QTMDRLYFVMEYVNGGDLMYHIQQV----GKFKEPVAVFYAAEIAIGLFFLH 467 (683)
T ss_pred hhhhheeeEEEEecCchhhhHHHHh----cccCCchhhhhhHHHHHHhhhhh
Confidence 4478899999999999999999854 45888899999999999999998
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5e-09 Score=103.60 Aligned_cols=97 Identities=23% Similarity=0.320 Sum_probs=83.6
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeecccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
...+|+..++||+|+|++|..+++... .+.||+| +.-+||.+|-++.++
T Consensus 248 ~l~df~ll~vigrgsyakvl~~~~~~t--~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscf----- 320 (593)
T KOG0695|consen 248 GLQDFDLLRVIGRGSYAKVLLVRLKKT--DQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCF----- 320 (593)
T ss_pred ccccceeeeeecCcchhhhhheehccc--ceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhh-----
Confidence 346799999999999999999997654 4499998 345799999999884
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+..++.|.||++||+|.-.+++. ++++++.+..+..+|+-||.|||
T Consensus 321 qtesrlffvieyv~ggdlmfhmqrq----rklpeeharfys~ei~lal~flh 368 (593)
T KOG0695|consen 321 QTESRLFFVIEYVNGGDLMFHMQRQ----RKLPEEHARFYSAEICLALNFLH 368 (593)
T ss_pred cccceEEEEEEEecCcceeeehhhh----hcCcHHHhhhhhHHHHHHHHHHh
Confidence 4588899999999999998887744 45999999999999999999998
|
|
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-08 Score=115.96 Aligned_cols=101 Identities=20% Similarity=0.248 Sum_probs=73.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCce-------------eE----EEEe-------------------cCCCCccee
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHE-------------TL----VAVK-------------------RSIRHRNLV 746 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~-------------~~----vavK-------------------~~l~H~niv 746 (809)
.++|+..+.||+|+||+||+|..+..... .. ++.| +.++|||||
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv 226 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL 226 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence 46799999999999999999875432100 00 0111 467999999
Q ss_pred eEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCC-CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPE-APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 747 ~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++++++.. ++..|+|+||+. +++.+++..... ........++..|+.|++.||+|||
T Consensus 227 ~l~~~~~~-----~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH 284 (501)
T PHA03210 227 KIEEILRS-----EANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIH 284 (501)
T ss_pred cEeEEEEE-----CCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999765 678899999995 578777754321 1122345677889999999999998
|
|
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-08 Score=99.35 Aligned_cols=94 Identities=30% Similarity=0.447 Sum_probs=79.6
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
|+..+.||+|++|.||+|...+.+. .+|+| ++++|+|++++++++.. ....+
T Consensus 1 ~~~~~~i~~g~~~~v~~~~~~~~~~--~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~-----~~~~~ 73 (225)
T smart00221 1 YELGKKLGEGAFGKVYLARDKGTGE--LVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFED-----PEPLY 73 (225)
T ss_pred CceeeEeecCCCeEEEEEEEcCCCc--EEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeec-----CCceE
Confidence 4567899999999999999765434 78988 35689999999998765 57799
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++||+++++|.+++.... ..+++..+..++.++++|++|||
T Consensus 74 ~v~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh 115 (225)
T smart00221 74 LVMEYCEGGDLFDYLRKKG---GKLSEEEARFYLRQILEALEYLH 115 (225)
T ss_pred EEEeccCCCCHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997542 11789999999999999999998
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.4e-10 Score=106.38 Aligned_cols=100 Identities=24% Similarity=0.403 Sum_probs=81.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc---C
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF---Q 758 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~---~ 758 (809)
..|.....||+|.||+||+|+... +++.||+| ..++|+|++.+++.|..... .
T Consensus 17 ~~yek~~kigqGtfgeVFkAr~~n--~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r 94 (376)
T KOG0669|consen 17 SKYEKLAKIGQGTFGEVFKARSKN--TGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNR 94 (376)
T ss_pred hHHHHHHhcCCchHHHHHHHhhcC--ccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccc
Confidence 456777899999999999999554 44579998 46789999999999976332 2
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...+|+||++|+. +|..++..+. ..++..++.+++.++..||.|+|
T Consensus 95 ~r~t~ylVf~~ceh-DLaGlLsn~~---vr~sls~Ikk~Mk~Lm~GL~~iH 141 (376)
T KOG0669|consen 95 DRATFYLVFDFCEH-DLAGLLSNRK---VRFSLSEIKKVMKGLMNGLYYIH 141 (376)
T ss_pred ccceeeeeHHHhhh-hHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 23458999999986 8998887542 45888999999999999999998
|
|
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-08 Score=99.12 Aligned_cols=108 Identities=24% Similarity=0.347 Sum_probs=84.5
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECCCCc---eeEEEEe---------------------cCCCCcceeeEeeeee
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDH---ETLVAVK---------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~---~~~vavK---------------------~~l~H~niv~l~~~~~ 753 (809)
++....+.++....+-+|.||.||+|.+++.++ .+.|-|| ..+.|||+.+..++|.
T Consensus 278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~i 357 (563)
T KOG1024|consen 278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSI 357 (563)
T ss_pred hhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEe
Confidence 444445667778889999999999998876543 1234444 4578999999999987
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCC----CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKP----EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~----~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+ +....+++|.|+.-|+|..+++.++ ...+.++-.+...+|.|++.||+|||
T Consensus 358 e----~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh 413 (563)
T KOG1024|consen 358 E----DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH 413 (563)
T ss_pred e----ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 5 4677899999999999999998443 22345777889999999999999998
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-09 Score=101.85 Aligned_cols=93 Identities=24% Similarity=0.448 Sum_probs=77.8
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.....++.+...|+.|+|++++.. +.+| +.+.||||.+++|+|.. +...
T Consensus 192 lnl~tkl~e~hsgelwrgrwqgnd----ivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacns-----ppnl 262 (448)
T KOG0195|consen 192 LNLITKLAESHSGELWRGRWQGND----IVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNS-----PPNL 262 (448)
T ss_pred hhhhhhhccCCCcccccccccCcc----hhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccC-----CCCc
Confidence 344567888899999999997653 2333 56789999999999986 6678
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+|..|||.|+|+..+|.. ....++-.++.++|.+||+||+|||
T Consensus 263 v~isq~mp~gslynvlhe~--t~vvvd~sqav~faldiargmaflh 306 (448)
T KOG0195|consen 263 VIISQYMPFGSLYNVLHEQ--TSVVVDHSQAVRFALDIARGMAFLH 306 (448)
T ss_pred eEeeeeccchHHHHHHhcC--ccEEEecchHHHHHHHHHhhHHHHh
Confidence 9999999999999999965 3456788899999999999999998
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-09 Score=118.33 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=37.0
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCC-CHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNS-NLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~-~~~~~~~i~~~ia~gl~yLH 809 (809)
..+||-||||+...+.+++++.. .. .-...++++++|++||+|+|
T Consensus 669 ~~LYIQMEyCE~~ll~~iI~~N~----~~~~~d~~wrLFreIlEGLaYIH 714 (1351)
T KOG1035|consen 669 LILYIQMEYCEKTLLRDIIRRNH----FNSQRDEAWRLFREILEGLAYIH 714 (1351)
T ss_pred eEEEEEHhhhhhhHHHHHHHhcc----cchhhHHHHHHHHHHHHHHHHHH
Confidence 35799999999999998887542 12 46678999999999999999
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-08 Score=102.76 Aligned_cols=100 Identities=20% Similarity=0.334 Sum_probs=79.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------------cCCCCcceeeEeeeeeccc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
..|...+++|-|.|++||.|.... ..+.||+| ....-..||+|++.+....
T Consensus 78 gRY~v~rKLGWGHFSTVWLawDtq--~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG 155 (590)
T KOG1290|consen 78 GRYHVQRKLGWGHFSTVWLAWDTQ--NKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG 155 (590)
T ss_pred ceEEEEEeccccccceeEEEeecc--CCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence 468889999999999999999544 34599999 1223356999999876532
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+..++||+||. |-+|..+|..... +-++...+..|++||+.||+|||
T Consensus 156 -pNG~HVCMVfEvL-GdnLLklI~~s~Y--rGlpl~~VK~I~~qvL~GLdYLH 204 (590)
T KOG1290|consen 156 -PNGQHVCMVFEVL-GDNLLKLIKYSNY--RGLPLSCVKEICRQVLTGLDYLH 204 (590)
T ss_pred -CCCcEEEEEehhh-hhHHHHHHHHhCC--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 2356799999999 6689999986542 34788899999999999999999
|
|
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-08 Score=113.54 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=71.5
Q ss_pred hcccccccceeccCCceeEEEEEECCC--CceeEEEEecC----------------CCCcceeeEeeeeeccc-cCCCce
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHD--DHETLVAVKRS----------------IRHRNLVKIITSCASVD-FQGNDF 762 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~--~~~~~vavK~~----------------l~H~niv~l~~~~~~~~-~~~~~~ 762 (809)
..++|+..+.||+|+||+||+|+.... ..+..||||+. ..|.+++.++..+.... ..++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKEDE 209 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCCc
Confidence 467899999999999999999997654 01338999921 11222322222111100 123667
Q ss_pred EEEEEeccCCCChhhhhcCCCCC----------------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEA----------------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~----------------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.++++.+... .....+..+..|+.|+++||+|||
T Consensus 210 ~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH 272 (566)
T PLN03225 210 YWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH 272 (566)
T ss_pred eEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998754200 001123446689999999999999
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-08 Score=96.36 Aligned_cols=95 Identities=20% Similarity=0.390 Sum_probs=79.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------c-------CCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------R-------SIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------~-------~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+.|++.+.+|+|.||++-.++++...+ .+++| + --.|.|||.-|++. |+..+..
T Consensus 24 d~y~I~k~lgeG~FgkIlL~eHr~s~t--~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~va----Fqt~d~Y 97 (378)
T KOG1345|consen 24 DVYTINKQLGEGRFGKILLAEHRQSKT--RIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVA----FQTSDAY 97 (378)
T ss_pred hhhhHHHHhcccceeeEEeeeccCCce--EEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHH----hhcCceE
Confidence 458888999999999999999776545 89999 1 22599999888763 5567889
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||+|.|||..-+... .+.+....+++.|++.|++|||
T Consensus 98 vF~qE~aP~gdL~snv~~~-----GigE~~~K~v~~ql~SAi~fMH 138 (378)
T KOG1345|consen 98 VFVQEFAPRGDLRSNVEAA-----GIGEANTKKVFAQLLSAIEFMH 138 (378)
T ss_pred EEeeccCccchhhhhcCcc-----cccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888643 3778889999999999999999
|
|
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.9e-08 Score=105.65 Aligned_cols=95 Identities=25% Similarity=0.394 Sum_probs=79.2
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCC------CcceeeEeeeeeccccCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIR------HRNLVKIITSCASVDFQG 759 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~------H~niv~l~~~~~~~~~~~ 759 (809)
.|.+.++||+|+||.|-||.... ++..|||| ..++ --|+|++++++..
T Consensus 187 rY~V~e~LGkGtFGQVvk~~d~~--T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~f----- 259 (586)
T KOG0667|consen 187 RYEVLEVLGKGSFGQVVKAYDHK--TGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYF----- 259 (586)
T ss_pred EEEEEEEecccccceeEEEEecC--CCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccc-----
Confidence 58889999999999999999544 45599999 1222 3579999999665
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..+||+|.++ -+|.++|+..+- ..++...++.|+.||+.||.+||
T Consensus 260 r~HlciVfELL~-~NLYellK~n~f--~Glsl~~ir~~~~Qil~~L~~L~ 306 (586)
T KOG0667|consen 260 RNHLCIVFELLS-TNLYELLKNNKF--RGLSLPLVRKFAQQILTALLFLH 306 (586)
T ss_pred ccceeeeehhhh-hhHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999885 599999997643 34889999999999999999997
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-08 Score=105.34 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=79.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.-|..++.||-|+||+|..+.-.+. ...||+| .+.+.+.||+||.. |+|.
T Consensus 629 SmFvkik~iGvGAFGeV~Lv~KvDT--~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyyS-----FQDk 701 (1034)
T KOG0608|consen 629 SMFVKIKTIGVGAFGEVCLVRKVDT--RALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYS-----FQDK 701 (1034)
T ss_pred cceEEEeeecccccceeEEEeecch--hhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEE-----eccC
Confidence 3478889999999999999984443 3477887 35578999999987 5668
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+|.||||++|||+..+|-+. +.|.+.-++.|+.+++.|++|.|
T Consensus 702 dnLYFVMdYIPGGDmMSLLIrm----gIFeE~LARFYIAEltcAiesVH 746 (1034)
T KOG0608|consen 702 DNLYFVMDYIPGGDMMSLLIRM----GIFEEDLARFYIAELTCAIESVH 746 (1034)
T ss_pred CceEEEEeccCCccHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 45888888999999999999987
|
|
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=99.93 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=72.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCc-eeEEEEe-------------------------------cCCCCcceeeEeee
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH-ETLVAVK-------------------------------RSIRHRNLVKIITS 751 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~-~~~vavK-------------------------------~~l~H~niv~l~~~ 751 (809)
..|...+.||+|+||+||+|...++.. ...+|+| ..+.|++|++++++
T Consensus 12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~ 91 (294)
T PHA02882 12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC 91 (294)
T ss_pred CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence 468899999999999999999765411 2256666 13579999999997
Q ss_pred eeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 752 CASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 752 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.... ......++++|++.. ++.+.+... ...++..+..|+.|+++||+|||
T Consensus 92 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH 143 (294)
T PHA02882 92 GSFKR-CRMYYRFILLEKLVE-NTKEIFKRI----KCKNKKLIKNIMKDMLTTLEYIH 143 (294)
T ss_pred eeEec-CCceEEEEEEehhcc-CHHHHHHhh----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 65411 111245788888754 666666532 23578889999999999999998
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=91.70 Aligned_cols=88 Identities=30% Similarity=0.496 Sum_probs=75.3
Q ss_pred eccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEEecc
Q 040849 712 IGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFM 770 (809)
Q Consensus 712 ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~ 770 (809)
||+|++|.||++.....+. .+++| +.++|++|+++++++.. ....+++|||+
T Consensus 1 l~~g~~~~v~~~~~~~~~~--~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~~~~e~~ 73 (215)
T cd00180 1 LGEGGFGTVYLARDKKTGK--KVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFED-----ENHLYLVMEYC 73 (215)
T ss_pred CCcCCceEEEEEEecCCCc--EEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeec-----CCeEEEEEecC
Confidence 6899999999999765333 78888 45789999999999765 57899999999
Q ss_pred CCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 771 VNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 771 ~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++++|.+++.... ..+++..+..++.+++++++|||
T Consensus 74 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh 109 (215)
T cd00180 74 EGGSLKDLLKENE---GKLSEDEILRILLQILEGLEYLH 109 (215)
T ss_pred CCCcHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999997542 35889999999999999999998
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-07 Score=89.79 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=63.6
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCC-----CCcceeeEeeeeeccccCCC
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSI-----RHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l-----~H~niv~l~~~~~~~~~~~~ 760 (809)
+...+.||+|+||.||+ .++... .+|| +.+ .||||++++|++.+. .+.
T Consensus 4 L~~~~~LG~G~~~~Vy~--hp~~~~---k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~--~g~ 76 (210)
T PRK10345 4 LSEQSPLGTGRHRKCYA--HPEDAQ---RCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETD--CGT 76 (210)
T ss_pred cCCcceecCCCceEEEE--CCCCcC---eEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeC--CCC
Confidence 44568899999999996 444322 3577 233 689999999997651 112
Q ss_pred ce-EEEEEec--cCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHh-hhcC
Q 040849 761 DF-KALVYEF--MVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL-DYLH 809 (809)
Q Consensus 761 ~~-~~lv~Ey--~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl-~yLH 809 (809)
.. ..+|+|| +++|+|.+++.+. .+++. ..++.|++.++ +|||
T Consensus 77 g~v~~~I~e~~G~~~~tL~~~l~~~-----~~~e~--~~~~~~~L~~l~~yLh 122 (210)
T PRK10345 77 GYVYDVIADFDGKPSITLTEFAEQC-----RYEED--VAQLRQLLKKLKRYLL 122 (210)
T ss_pred eEEEEEEecCCCCcchhHHHHHHcc-----cccHh--HHHHHHHHHHHHHHHH
Confidence 34 3489999 6689999999642 25555 35678888777 8998
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=8e-09 Score=89.48 Aligned_cols=135 Identities=21% Similarity=0.193 Sum_probs=91.5
Q ss_pred CcEEeCcCCcCccccCcchhcccCCc--eEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEe
Q 040849 468 LILLGLSNNNLTGTIPTEVIGLSSLS--IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLG 545 (809)
Q Consensus 468 L~~L~Ls~N~l~~~~p~~~~~l~~l~--~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 545 (809)
+..+||+++++. .+++....+.... ...+|++|.+....+..-...+.++.|+|++|.|+ .+|.++..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 445666666664 3444444333321 34678888877444433344567888899999998 7788899999999999
Q ss_pred CcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC
Q 040849 546 MNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK 606 (809)
Q Consensus 546 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~ 606 (809)
++.|.+. ..|..+..+.++-.||..+|.+. +||..+-.-+.....++.++++.+..|..
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 9999998 56777777888999999988887 34433333333444556777777776654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.6e-09 Score=112.48 Aligned_cols=125 Identities=26% Similarity=0.314 Sum_probs=79.2
Q ss_pred CCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCc-cCCCCCCCCEEEcc
Q 040849 125 LQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPS-SFGNLSSLEVLSAS 203 (809)
Q Consensus 125 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls 203 (809)
|.+.+.++|.+. ....++.-++.|+.|||++|+++.. +.+..+++|++|||++|.+. .+|. .-..+. |+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence 555566666665 4455566667777777777777643 26677777777777777776 3332 222333 7777777
Q ss_pred cCcccccCcccccCCCCccEEEeecCcCCCCcc-hhccCCCCCceeccCCcccc
Q 040849 204 ANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIP-FSIYNLSSLNYFEFPVNQLQ 256 (809)
Q Consensus 204 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~ 256 (809)
+|.++.. ..+.+|++|+.||+++|-+.+.-- ..+..|..|..|+|.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777643 346677777777777777664321 22445666777777777653
|
|
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-07 Score=90.01 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=60.6
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe----c---------------CC-------------------CCcceeeEee
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK----R---------------SI-------------------RHRNLVKIIT 750 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----~---------------~l-------------------~H~niv~l~~ 750 (809)
...||+|+||.||+|...+ ++.|||| . .+ .++++.++..
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~---g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~ 78 (190)
T cd05147 2 NGCISTGKEANVYHATTAN---GEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVT 78 (190)
T ss_pred CCccccccceEEEEEECCC---CCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999752 3489999 1 01 1233333332
Q ss_pred eeec-cccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 040849 751 SCAS-VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808 (809)
Q Consensus 751 ~~~~-~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yL 808 (809)
.... +........+|||||++++++...... ...+++.++..++.|++++|+|+
T Consensus 79 ~~v~~p~~~~~~~~~iVmE~i~g~~l~~~~~~----~~~~~~~~~~~i~~qi~~~L~~l 133 (190)
T cd05147 79 AGIPCPEPILLKSHVLVMEFIGDDGWAAPRLK----DAPLSESKARELYLQVIQIMRIL 133 (190)
T ss_pred CCCCCCcEEEecCCEEEEEEeCCCCCcchhhh----cCCCCHHHHHHHHHHHHHHHHHH
Confidence 1110 000001223899999999877654321 13588999999999999999998
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.1e-07 Score=101.19 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=67.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeeccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
...|...+.||+|+||+||+|.+..... .+.++ +.++|++++..+.++..
T Consensus 332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~--v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-- 407 (535)
T PRK09605 332 KRRKIPDHLIGKGAEADIKKGEYLGRDA--VIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVD-- 407 (535)
T ss_pred ccccCccceeccCCcEEEEEEeecCccc--eeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEe--
Confidence 3445667999999999999998765432 11111 35678998887776554
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...++||||+++++|.+++. .+..++.|++++|+|||
T Consensus 408 ---~~~~~lv~E~~~g~~L~~~l~------------~~~~~~~~i~~~L~~lH 445 (535)
T PRK09605 408 ---PEEKTIVMEYIGGKDLKDVLE------------GNPELVRKVGEIVAKLH 445 (535)
T ss_pred ---CCCCEEEEEecCCCcHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 456789999999999998874 35678999999999998
|
|
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.1e-07 Score=91.33 Aligned_cols=83 Identities=31% Similarity=0.439 Sum_probs=71.3
Q ss_pred CceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEEEeccCCCC
Q 040849 716 SFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGS 774 (809)
Q Consensus 716 ~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~Gs 774 (809)
+||.||+|+..+.+. .+|+| ++++|+||+++++++.. ....+++|||+++|+
T Consensus 1 ~~g~v~~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~l~~e~~~~~~ 73 (244)
T smart00220 1 SFGKVYLARDKKTGK--LVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFED-----EDKLYLVMEYCDGGD 73 (244)
T ss_pred CceEEEEEEECCCCc--EEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheee-----CCEEEEEEeCCCCCC
Confidence 589999999765434 78998 46799999999999765 578999999999999
Q ss_pred hhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 775 LEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 775 L~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|.+++.... .+++.++..++.++++|++|||
T Consensus 74 L~~~~~~~~----~~~~~~~~~~~~~l~~~l~~lh 104 (244)
T smart00220 74 LFDLLKKRG----RLSEDEARFYARQILSALEYLH 104 (244)
T ss_pred HHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHH
Confidence 999997542 2889999999999999999998
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-08 Score=111.16 Aligned_cols=175 Identities=26% Similarity=0.210 Sum_probs=83.9
Q ss_pred CCCCCEEEeeCCeeeccc-CcCCcCCCCccEEEcccccCcccCCccccCC------------------------------
Q 040849 417 LHKLQRLGLQGNKFLGEI-PSSIGNLTLLITLSFDKNMLEGSIPSSLGKC------------------------------ 465 (809)
Q Consensus 417 l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l------------------------------ 465 (809)
+++++.|.+-.-.=.+.. |-.+..+.+|+.|.+.++.+... ..+..+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 344444444332222222 44566778999999999888631 111111
Q ss_pred ---CCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCC
Q 040849 466 ---QNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 542 (809)
Q Consensus 466 ---~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 542 (809)
..|...+.++|.+. .+...+.-++.+ +.|||++|+++... .+..++.|+.|||++|.+....--...++. |+
T Consensus 161 ~~Wn~L~~a~fsyN~L~-~mD~SLqll~al-e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLV-LMDESLQLLPAL-ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred hhhhhHhhhhcchhhHH-hHHHHHHHHHHh-hhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-he
Confidence 12334444455544 333333334444 45555555555332 444555555555555555522222223333 55
Q ss_pred EEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccc-cccccCCCCCeEEccCCccc
Q 040849 543 QLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP-KYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 543 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~l~ls~N~l~ 600 (809)
.|+|++|.++.. ..+.+|++|+.||+|+|-|++--. ..+..+.+|+.|+|.+|++.
T Consensus 236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 555555555522 134455555555555555543211 11234445555555555554
|
|
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.4e-07 Score=86.71 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=33.3
Q ss_pred EEEEEeccCCCChhhh-hcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEW-LHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~-l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||++++++... +.. ..++..++..++.|++.++.|+|
T Consensus 92 ~~lVmE~~~g~~~~~~~l~~-----~~~~~~~~~~i~~~l~~~l~~lH 134 (190)
T cd05145 92 NVLVMEFIGDDGSPAPRLKD-----VPLEEEEAEELYEQVVEQMRRLY 134 (190)
T ss_pred CEEEEEEecCCCchhhhhhh-----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 3899999998865433 331 34678889999999999999998
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.7e-07 Score=89.75 Aligned_cols=83 Identities=16% Similarity=0.267 Sum_probs=64.0
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe----------------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+.||+|++|.||+|...+. .|++| ..++|++|.....++.. .+
T Consensus 2 ~~l~~G~~~~vy~~~~~~~----~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-----~~ 72 (211)
T PRK14879 2 KLIKRGAEAEIYLGDFLGI----KAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVD-----PE 72 (211)
T ss_pred cccccCceEEEEEEeeCCC----ceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEe-----CC
Confidence 5789999999999986332 56777 12456777666655443 45
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||++|++|.+++... .+ ++..++.+++.+|+++|
T Consensus 73 ~~~lv~e~~~G~~L~~~~~~~-------~~-~~~~i~~~i~~~l~~lH 112 (211)
T PRK14879 73 NFIIVMEYIEGEPLKDLINSN-------GM-EELELSREIGRLVGKLH 112 (211)
T ss_pred CCEEEEEEeCCcCHHHHHHhc-------cH-HHHHHHHHHHHHHHHHH
Confidence 678999999999999998632 12 78899999999999998
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.6e-08 Score=95.09 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=76.2
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.+..+.||-|+||+||.++.+.++ +.||.| ..++|.|+...++....+...--+++
T Consensus 55 i~PDRPIGYGAFGVVWsVTDPRdg--rrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEi 132 (449)
T KOG0664|consen 55 IQPDRPIGYGAFGVVWSVTDPRSG--KRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQEL 132 (449)
T ss_pred CCCCCcccccceeEEEeccCCCCc--cchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHH
Confidence 455689999999999999966554 489998 35689999998887544221112457
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+|.|.|. .+|++.|- .+..++-+.+.-+..||++||.|||
T Consensus 133 YV~TELmQ-SDLHKIIV----SPQ~Ls~DHvKVFlYQILRGLKYLH 173 (449)
T KOG0664|consen 133 YVLTELMQ-SDLHKIIV----SPQALTPDHVKVFVYQILRGLKYLH 173 (449)
T ss_pred HHHHHHHH-hhhhheec----cCCCCCcchhhhhHHHHHhhhHHHh
Confidence 99999995 58988886 3456888899999999999999998
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-07 Score=87.86 Aligned_cols=95 Identities=19% Similarity=0.419 Sum_probs=74.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------cCCC-CcceeeEeeeeeccccCCCceEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSIR-HRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l~-H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.++|++.+.+|+|.|++||.|.--.... .+.|| ..++ |||||+++++..++. .....
T Consensus 37 ~ddYeivrk~GRGKYSEVFeg~~~~~~e--K~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~---Sktpa 111 (338)
T KOG0668|consen 37 QDDYEIVRKVGRGKYSEVFEGINITNNE--KCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPE---SKTPS 111 (338)
T ss_pred cchHHHHHHHcCccHhhHhcccccCCCc--eEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCcc---ccCch
Confidence 4678999999999999999998544333 56666 2344 999999999876532 45578
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|+||+.+-+...+-. .++-..+..++.+++.||+|+|
T Consensus 112 LiFE~v~n~Dfk~ly~-------tl~d~dIryY~~elLkALdyCH 149 (338)
T KOG0668|consen 112 LIFEYVNNTDFKQLYP-------TLTDYDIRYYIYELLKALDYCH 149 (338)
T ss_pred hHhhhhccccHHHHhh-------hhchhhHHHHHHHHHHHHhHHH
Confidence 9999999988765543 2666788999999999999998
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1e-06 Score=95.71 Aligned_cols=95 Identities=29% Similarity=0.360 Sum_probs=78.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
++.|.....+|.|+|+.|-++......+ ..||| ..-+||||+++.+.+.. +...|+
T Consensus 321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~--~~~vkii~~~~~~~~~e~~~~~~~~~h~niv~~~~v~~~-----~~~~~~ 393 (612)
T KOG0603|consen 321 TESYEFREELGEGSFSAVKYCESSPTDQ--EPAVKIISKRADDNQDEIPISLLVRDHPNIVKSHDVYED-----GKEIYL 393 (612)
T ss_pred chhhccccccCCCCccceeeeecccccc--chhheeccccccccccccchhhhhcCCCcceeecceecC-----Cceeee
Confidence 4567778889999999999999665544 78888 23479999999999765 888999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||++.+|.+.+.++..+ ....++..|+++++.|+.|||
T Consensus 394 v~e~l~g~ell~ri~~~~-----~~~~e~~~w~~~lv~Av~~LH 432 (612)
T KOG0603|consen 394 VMELLDGGELLRRIRSKP-----EFCSEASQWAAELVSAVDYLH 432 (612)
T ss_pred eehhccccHHHHHHHhcc-----hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887543 223678889999999999999
|
|
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.9e-07 Score=83.67 Aligned_cols=103 Identities=22% Similarity=0.198 Sum_probs=80.9
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~ 756 (809)
+..+.++......||+|+||.|-+-++...++ ..||| +....|.+|.+||.+..
T Consensus 41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~--imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~r-- 116 (282)
T KOG0984|consen 41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGT--IMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFR-- 116 (282)
T ss_pred cccchhhhhhhhhhcCCccchhhheeeccCCe--EEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhc--
Confidence 34444566677889999999998887655544 89999 45568999999998554
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...||.||.|+ -||..+-++--..+..+++...-+||..|.+||.|||
T Consensus 117 ---egdvwIcME~M~-tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~ 165 (282)
T KOG0984|consen 117 ---EGDVWICMELMD-TSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLH 165 (282)
T ss_pred ---cccEEEeHHHhh-hhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHH
Confidence 778999999996 4787765532234567899999999999999999998
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.8e-08 Score=100.29 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=80.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
..++.....+|-|+||.|-.+....... .+|+| ...+.|.||++|..+ .+
T Consensus 419 l~dl~~iaTLGvGgFGRVELV~~~~~~~--~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTf-----rd 491 (732)
T KOG0614|consen 419 LSDLKRIATLGVGGFGRVELVKVNSQKA--TFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTF-----RD 491 (732)
T ss_pred hhhhhhhhhcccCccceEEEEEecccch--HHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHh-----cc
Confidence 3456677889999999999998765433 57777 346789999999874 45
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+++|++||-|-||++...++.+ ..++...+..|+..|.+|++|||
T Consensus 492 ~kyvYmLmEaClGGElWTiLrdR----g~Fdd~tarF~~acv~EAfeYLH 537 (732)
T KOG0614|consen 492 SKYVYMLMEACLGGELWTILRDR----GSFDDYTARFYVACVLEAFEYLH 537 (732)
T ss_pred chhhhhhHHhhcCchhhhhhhhc----CCcccchhhhhHHHHHHHHHHHH
Confidence 88999999999999999999865 45899999999999999999999
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-06 Score=92.05 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=75.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCC-CCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSI-RHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l-~H~niv~l~~~~~~~~~~~~ 760 (809)
..|+..+.||+||.++||++...+. +.||+| .++ .|.+||++++|-.. +
T Consensus 361 ~~Yeilk~iG~GGSSkV~kV~~s~~---~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~-----d 432 (677)
T KOG0596|consen 361 REYEILKQIGSGGSSKVFKVLNSDK---QIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVT-----D 432 (677)
T ss_pred chhhHHHhhcCCCcceeeeeecCCC---cchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeecc-----C
Confidence 3588899999999999999985443 267877 233 68999999999765 8
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++||||||- .-||.++|+++.. ...+| .+..|..|++.|+.|+|
T Consensus 433 ~~lYmvmE~G-d~DL~kiL~k~~~--~~~~~-~lk~ywkqML~aV~~IH 477 (677)
T KOG0596|consen 433 GYLYMVMECG-DIDLNKILKKKKS--IDPDW-FLKFYWKQMLLAVKTIH 477 (677)
T ss_pred ceEEEEeecc-cccHHHHHHhccC--CCchH-HHHHHHHHHHHHHHHHH
Confidence 8999999976 4699999987642 33446 78889999999999998
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-06 Score=97.87 Aligned_cols=94 Identities=29% Similarity=0.425 Sum_probs=70.3
Q ss_pred ccccceeccCCcee-EEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 706 FSLENLIGAGSFGS-VYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 706 ~~~~~~ig~G~~g~-Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
|...+++|.|+-|+ ||+|.+.+. .|||| ..=+|||||++|+.- +++.+.||.
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~ye~R----~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E-----~d~qF~YIa 581 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVYEGR----EVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSE-----QDRQFLYIA 581 (903)
T ss_pred eccHHHcccCCCCcEEEEEeeCCc----eehHHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeec-----cCCceEEEE
Confidence 45567889998886 999998654 89999 234799999998763 348889999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|.|. -+|.+++...........-.....+..|++.||++||
T Consensus 582 lELC~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLH 623 (903)
T KOG1027|consen 582 LELCA-CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLH 623 (903)
T ss_pred ehHhh-hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHH
Confidence 99996 5999999864111000111345778899999999999
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-07 Score=90.28 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=27.3
Q ss_pred CCCCcEEEccCccccccC-CcccccCCCCceEecCCCcceee--CCCCCCCCCCcEEEeccccCC
Q 040849 267 LPNLERLNLGENQFTGPI-PASISNASHLMRLTIPINGFSGK--VPSFGNLHKLQWVSISMNHLG 328 (809)
Q Consensus 267 l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~Ls~n~l~ 328 (809)
+|++..+.+..|.+...- -......+.+..|+++.|++..- +..+..++.|..|.++++.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 455555555555543221 11223334444455555544321 122444455555555555443
|
|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-06 Score=86.30 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=56.3
Q ss_pred eeccCCceeEEEEEECCCCceeEEEEec----------------------------CCCCcceeeEeeeeeccccCCCce
Q 040849 711 LIGAGSFGSVYKGILNHDDHETLVAVKR----------------------------SIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 711 ~ig~G~~g~Vy~~~~~~~~~~~~vavK~----------------------------~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.||+|+||+||+|.+.+ . .|++|. .++|+++.....++.. .+.
T Consensus 1 ~ig~G~~~~vy~~~~~~--~--~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-----~~~ 71 (199)
T TIGR03724 1 LIAKGAEAIIYLGDFLG--L--KAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVD-----PDN 71 (199)
T ss_pred CCCCCceEEEEEeecCC--c--cEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-----CCC
Confidence 37999999999999543 2 577771 2345554433333322 445
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||++|++|.+++.... . .++.|++++|+++|
T Consensus 72 ~~lv~e~~~g~~l~~~~~~~~----------~-~~~~~i~~~l~~lH 107 (199)
T TIGR03724 72 KTIVMEYIEGKPLKDVIEEGN----------D-ELLREIGRLVGKLH 107 (199)
T ss_pred CEEEEEEECCccHHHHHhhcH----------H-HHHHHHHHHHHHHH
Confidence 789999999999998875321 0 78999999999998
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.1e-08 Score=95.49 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=77.6
Q ss_pred CCCCCcEEEccCccccccCCcccccCCCCceEecCCC-cceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhccccc
Q 040849 266 TLPNLERLNLGENQFTGPIPASISNASHLMRLTIPIN-GFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNA 344 (809)
Q Consensus 266 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~ 344 (809)
.+.+|+.|.|.++++...+...++.-.+|+.|+++.+ +++...- ---+.+|
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~----------------------------~ll~~sc 259 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL----------------------------QLLLSSC 259 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH----------------------------HHHHHhh
Confidence 4555666666666665555555555555666665543 2221110 1123345
Q ss_pred CCccEEeccccccccc-cchhhhhccccCcEEEccCCccc---ccCCccccCCCCCCeeeCCCcc-ceecCCccccCCCC
Q 040849 345 SRLELLGININNFGGM-LPEAVGNLSTRLRILRVGNNQLF---GNIPSGLRNLVNLERLLLEGNQ-FTGRIPGSIGDLHK 419 (809)
Q Consensus 345 ~~L~~L~l~~n~~~~~-~p~~~~~~~~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 419 (809)
++|+.|+++.+.+... +...+....++|+.|+++++.-. ..+..-...+++|..|||++|. ++...-..|-+++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 5555555555543322 22344455566788887776421 1112223456777777777653 33222234455666
Q ss_pred CCEEEeeCCeeecccCcC---CcCCCCccEEEcc
Q 040849 420 LQRLGLQGNKFLGEIPSS---IGNLTLLITLSFD 450 (809)
Q Consensus 420 L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~ 450 (809)
|++|.++.|-. .+|.. +...++|.+|+..
T Consensus 340 L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 340 LQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred heeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence 66666666642 33432 3344555555544
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=80.71 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=64.1
Q ss_pred HHhcccccccceeccCCceeEEEEE-ECCCCceeEEEEec----CC--------------------------------CC
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGI-LNHDDHETLVAVKR----SI--------------------------------RH 742 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~-~~~~~~~~~vavK~----~l--------------------------------~H 742 (809)
......|...+.||+|+||.||+|. .... ++.||||. .. .|
T Consensus 24 ~~~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~--g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 101 (237)
T smart00090 24 LNRGILSAIGGCISTGKEANVYHALDFDGS--GKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEF 101 (237)
T ss_pred HhcCchHHhCCeeccCcceeEEEEEecCCC--CcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHH
Confidence 3333457788999999999999998 3333 33899991 00 11
Q ss_pred cceeeEeeeeec-cccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 743 RNLVKIITSCAS-VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 743 ~niv~l~~~~~~-~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++.++...... +..-.....++||||++++++....... ......++..++.|++++++|||
T Consensus 102 ~~L~~L~~~~i~~p~~~~~~~~~lV~E~~~g~~L~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH 165 (237)
T smart00090 102 RNLQRLYEAGVPVPKPIAWRRNVLVMEFIGGDGLPAPRLKD----VEPEEEEEFELYDDILEEMRKLY 165 (237)
T ss_pred HHHHHHHhcCCCCCeeeEecCceEEEEEecCCccccccccc----CCcchHHHHHHHHHHHHHHHHHH
Confidence 111111110000 0000012358999999999987665322 23556677899999999999998
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-06 Score=78.31 Aligned_cols=102 Identities=27% Similarity=0.447 Sum_probs=75.5
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe---cCCCCccee---eEeee---eecc-----ccCCCceEEEEE
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---RSIRHRNLV---KIITS---CASV-----DFQGNDFKALVY 767 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---~~l~H~niv---~l~~~---~~~~-----~~~~~~~~~lv~ 767 (809)
...+|...+.||.|+||.+|.|..-..+. .|||| +..+||.+. ++|+. +... ....+.+-.+||
T Consensus 13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge--~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM 90 (341)
T KOG1163|consen 13 VGGKYKLVRKIGSGSFGDIYLGISITSGE--EVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM 90 (341)
T ss_pred eccceEEEEeecCCchhheeeeeeccCCc--eEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence 34679999999999999999999765555 89999 667777643 11110 0000 012256678999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|.. |-+|+++..-+. +.++..+++-.|-|+..-++|+|
T Consensus 91 dLL-GPsLEdLfnfC~---R~ftmkTvLMLaDQml~RiEyvH 128 (341)
T KOG1163|consen 91 DLL-GPSLEDLFNFCS---RRFTMKTVLMLADQMLSRIEYVH 128 (341)
T ss_pred ecc-CccHHHHHHHHh---hhhhHHhHHHHHHHHHHHHHHHH
Confidence 988 779999887543 45888999999999999999998
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.2e-06 Score=86.57 Aligned_cols=98 Identities=26% Similarity=0.316 Sum_probs=80.5
Q ss_pred HHhcccccccceeccCCceeEEEEEECCC-CceeEEEEe-------------------cCCCCcceeeEeeeeeccccCC
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
......|...++||+|+|++||+++.... ...+.||+| ..-.|.||+++.++...
T Consensus 32 p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rn----- 106 (418)
T KOG1167|consen 32 PFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRN----- 106 (418)
T ss_pred hhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhcc-----
Confidence 34456688899999999999999996651 134589999 23468899999998544
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++...+|+||++.-+-.++... ++..++..+.+.+..||+|+|
T Consensus 107 nd~v~ivlp~~~H~~f~~l~~~-------l~~~~i~~Yl~~ll~Al~~~h 149 (418)
T KOG1167|consen 107 NDQVAIVLPYFEHDRFRDLYRS-------LSLAEIRWYLRNLLKALAHLH 149 (418)
T ss_pred CCeeEEEecccCccCHHHHHhc-------CCHHHHHHHHHHHHHHhhhhh
Confidence 7889999999999988888752 678889999999999999998
|
|
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.3e-07 Score=88.61 Aligned_cols=96 Identities=28% Similarity=0.251 Sum_probs=72.8
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+.+....||.|+||+|+|-.++..+. ..||| +.-+-||||++||++.. ++.
T Consensus 65 ~Lqdlg~iG~G~fG~V~KM~hk~sg~--~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~-----EGd 137 (361)
T KOG1006|consen 65 NLQDLGEIGNGAFGTVNKMLHKPSGK--LMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFS-----EGD 137 (361)
T ss_pred hHHHHHHhcCCcchhhhhhhcCccCc--EEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhc-----CCc
Confidence 34456789999999999998766544 99999 23457999999999865 677
Q ss_pred EEEEEeccCCCChhhhhcC-CCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 040849 763 KALVYEFMVNGSLEEWLHP-KPEAPRNSNLLQRLSIAVDVASALDYL 808 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~-~~~~~~~~~~~~~~~i~~~ia~gl~yL 808 (809)
.||-||.|+ -|++.+-+. ...+...+++.-.-.|+.-+..||+||
T Consensus 138 cWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yL 183 (361)
T KOG1006|consen 138 CWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYL 183 (361)
T ss_pred eeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHH
Confidence 999999995 466544321 001234588888888999999999997
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-06 Score=85.31 Aligned_cols=229 Identities=19% Similarity=0.174 Sum_probs=146.9
Q ss_pred CcEEEEECCCCCCccc----cCccccCCCCccEEeCCCCCCCcc----CC-------ccccccccCCccccCCCcCcccC
Q 040849 75 QRVTALLLPSLLLQGS----LSPHIGNLSFLRVLDLKNNSFRNE----IP-------QEIGYLFRLQFLWLDNNTFGGQI 139 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g~----~~~~l~~l~~L~~LdLs~n~l~~~----~p-------~~~~~l~~L~~L~Ls~N~l~~~~ 139 (809)
..++.++||+|.+... +...+.+-.+|+..++|.- ++|. +| .++.+|++|+..+||+|.|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4678888888887654 3345666777888777753 2222 22 23466788888888888887666
Q ss_pred Ccc----ccCCCcCcEEEcccCCCCCCCcc-c-------------ccCCCCCCEEEcccccCcccCCc-----cCCCCCC
Q 040849 140 PDN----ISHCVNLESLRLGFNELVGKVPR-K-------------LGSLSKLRTLAVHYNNLSGQIPS-----SFGNLSS 196 (809)
Q Consensus 140 p~~----~~~l~~L~~L~Ls~N~l~~~~p~-~-------------l~~l~~L~~L~Ls~N~l~~~~p~-----~~~~l~~ 196 (809)
|+. +++-+.|++|.|++|.+- .+.. - ..+-+.|++.....|++.. .|. .+..-.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~ 186 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHEN 186 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcC
Confidence 654 456678888888888763 2211 1 1345678888888888752 221 1333357
Q ss_pred CCEEEcccCccccc-----CcccccCCCCccEEEeecCcCCCCc----chhccCCCCCceeccCCcccccccChhhh---
Q 040849 197 LEVLSASANQFVGQ-----IPKTLSQLKRMRFIGFGVNKLSGEI----PFSIYNLSSLNYFEFPVNQLQGSLPSDLG--- 264 (809)
Q Consensus 197 L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--- 264 (809)
|+++.+..|.|.-. +-..+..+.+|+.||+..|-++-.- ...+..++.|+.|.+..|-++..-...+.
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 88888888876521 1123455678888888888876432 23345566788888888877644333332
Q ss_pred --cCCCCCcEEEccCccccccCCcc-------cccCCCCceEecCCCccee
Q 040849 265 --FTLPNLERLNLGENQFTGPIPAS-------ISNASHLMRLTIPINGFSG 306 (809)
Q Consensus 265 --~~l~~L~~L~Ls~N~l~~~~p~~-------l~~l~~L~~L~l~~n~l~~ 306 (809)
...|+|..|-..+|...+.+-.. -..++-|..|.+.+|++..
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 13688888888888776433221 1346677788888888864
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-07 Score=91.76 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=66.5
Q ss_pred cCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEccccc-CcccCC-ccCCCCCCCCEEEcccCcccccCcc-cccC-CC
Q 040849 144 SHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNN-LSGQIP-SSFGNLSSLEVLSASANQFVGQIPK-TLSQ-LK 219 (809)
Q Consensus 144 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~-l~ 219 (809)
.++..|+.|.|.++++...+...+..-.+|+.|+|+.+. ++..-. --+.+++.|..|+|+.|.++...-. ...+ -+
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 344444444444444444444444444444444444432 221000 1133444455555554444321111 1111 12
Q ss_pred CccEEEeecCc--CC-CCcchhccCCCCCceeccCCcc-cccccChhhhcCCCCCcEEEccCccccccCCc---ccccCC
Q 040849 220 RMRFIGFGVNK--LS-GEIPFSIYNLSSLNYFEFPVNQ-LQGSLPSDLGFTLPNLERLNLGENQFTGPIPA---SISNAS 292 (809)
Q Consensus 220 ~L~~L~L~~n~--l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~ 292 (809)
+|+.|++++.. +. ..+..-...+++|.+|||++|. ++...-..++ .++.|++|.++.|.. .+|. .+...+
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~--i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYD--IIPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcC--CChHHeeeeccCc
Confidence 34444444432 11 1111122345566666665543 2222222232 566677777766642 3443 345566
Q ss_pred CCceEecCCC
Q 040849 293 HLMRLTIPIN 302 (809)
Q Consensus 293 ~L~~L~l~~n 302 (809)
.|.+|++.++
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 7777776543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.4e-06 Score=84.09 Aligned_cols=63 Identities=29% Similarity=0.307 Sum_probs=32.8
Q ss_pred CCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceee--CCCCCCCCCCcEEEeccccCC
Q 040849 266 TLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGK--VPSFGNLHKLQWVSISMNHLG 328 (809)
Q Consensus 266 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~Ls~n~l~ 328 (809)
++|.|++|+|+.|++...+...-....+|+.|-+.+..+.=. ...+..++.++.++++.|.+.
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 566666666666666543332223344555555554444311 112556666677777766543
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.1e-05 Score=84.00 Aligned_cols=97 Identities=27% Similarity=0.414 Sum_probs=74.5
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe---c--C---------------CC----CcceeeEeeeeeccccCCC
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---R--S---------------IR----HRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---~--~---------------l~----H~niv~l~~~~~~~~~~~~ 760 (809)
.|...+.||+|+||.||.+...... ...+|+| . . +. -+++.++++... ..+
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~-~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~----~~~ 93 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEK-NKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGR----STE 93 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCC-CeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEecc----CCC
Confidence 7899999999999999999965543 3468888 0 1 11 136666666642 136
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+.||||+.+ |-+|.++..... ...++..++.+|+.|+..+|+|||
T Consensus 94 ~~~~iVM~l~-G~sL~dl~~~~~--~~~fs~~T~l~ia~q~l~~l~~lH 139 (322)
T KOG1164|consen 94 DFNFIVMSLL-GPSLEDLRKRNP--PGRFSRKTVLRIAIQNLNALEDLH 139 (322)
T ss_pred ceeEEEEecc-CccHHHHHHhCC--CCCcCHhHHHHHHHHHHHHHHHHH
Confidence 6889999977 779999876543 467999999999999999999998
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.7e-06 Score=82.81 Aligned_cols=97 Identities=20% Similarity=0.296 Sum_probs=75.7
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCC-CC-cc----eeeEeeeeecccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSI-RH-RN----LVKIITSCASVDF 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l-~H-~n----iv~l~~~~~~~~~ 757 (809)
+..|.....+|+|.||+|-++..+.. +..|||| .++ ++ |+ +|++.+++.
T Consensus 88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~--~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFd---- 161 (415)
T KOG0671|consen 88 TNRYEIVDLLGEGTFGKVVECWDRET--KEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFD---- 161 (415)
T ss_pred ccceehhhhhcCCcccceEEEeecCC--CceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhh----
Confidence 56788999999999999999996554 4589999 223 12 22 666656533
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
-.+..+||+|.+ |-|+++++.... -.+++-.++..|+.|++++++|||
T Consensus 162 -yrghiCivfell-G~S~~dFlk~N~--y~~fpi~~ir~m~~QL~~sv~fLh 209 (415)
T KOG0671|consen 162 -YRGHICIVFELL-GLSTFDFLKENN--YIPFPIDHIRHMGYQLLESVAFLH 209 (415)
T ss_pred -ccCceEEEEecc-ChhHHHHhccCC--ccccchHHHHHHHHHHHHHHHHHH
Confidence 277899999988 559999998653 356888899999999999999998
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.7e-07 Score=77.40 Aligned_cols=87 Identities=28% Similarity=0.386 Sum_probs=52.7
Q ss_pred ccCCCCccEEeCCCCCCCccCCcccc-ccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCC
Q 040849 95 IGNLSFLRVLDLKNNSFRNEIPQEIG-YLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKL 173 (809)
Q Consensus 95 l~~l~~L~~LdLs~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 173 (809)
+....+|...+|++|.|. ..|..|. ..+.++.|+|++|.++ .+|..+..++.|+.|++++|.+. ..|..+..|.+|
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 444556666677777666 3444443 3346666666666666 55666666666666666666665 445555556666
Q ss_pred CEEEcccccCc
Q 040849 174 RTLAVHYNNLS 184 (809)
Q Consensus 174 ~~L~Ls~N~l~ 184 (809)
-.|+.-+|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 66666666554
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.8e-05 Score=76.86 Aligned_cols=91 Identities=9% Similarity=0.038 Sum_probs=66.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------------cCCCCcceeeEeeeee
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------------~~l~H~niv~l~~~~~ 753 (809)
...|...+++|.|+||.||.+... .+.+||| .++.||+|..+..+..
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~~----~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~ 105 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDTD----YGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYL 105 (232)
T ss_pred hCceEEEEEecCCCceEEEEEecC----CCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeee
Confidence 467999999999999999997642 2269999 3467999999988754
Q ss_pred cccc---CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDF---QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~---~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.... .-....+|||||++|.+|.++.. ++. ....++++++..+|
T Consensus 106 ~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~--------~~~----~~~~~i~~~l~~lH 152 (232)
T PRK10359 106 LAERKTLRYAHTYIMLIEYIEGVELNDMPE--------ISE----DVKAKIKASIESLH 152 (232)
T ss_pred ecccccccccCCeEEEEEEECCccHHHhhh--------ccH----HHHHHHHHHHHHHH
Confidence 3211 11245899999999999987732 232 23568888888887
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.2e-05 Score=56.74 Aligned_cols=36 Identities=36% Similarity=0.642 Sum_probs=15.4
Q ss_pred CCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcc
Q 040849 540 RLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS 576 (809)
Q Consensus 540 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 576 (809)
+|++|++++|+|+ .+|..+++|++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.3e-05 Score=80.48 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=44.0
Q ss_pred ccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccc-cCcccCCccccCCCCC
Q 040849 390 LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN-MLEGSIPSSLGKCQNL 468 (809)
Q Consensus 390 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L 468 (809)
+..+.+++.|++++|.++ .+|. + -++|+.|.++++.-...+|..+. ++|+.|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 455677888888888776 3442 1 23588888877544345554432 46777777766 333 3332 35
Q ss_pred cEEeCcCCcC
Q 040849 469 ILLGLSNNNL 478 (809)
Q Consensus 469 ~~L~Ls~N~l 478 (809)
+.|+++.|..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 5555555443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.9e-05 Score=55.76 Aligned_cols=37 Identities=35% Similarity=0.573 Sum_probs=23.2
Q ss_pred CCCCEEEccccccccccCccccCCCCCCEEeCcCCccc
Q 040849 515 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQ 552 (809)
Q Consensus 515 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 552 (809)
++|++|++++|+|+ .+|..+++|++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35667777777776 44555667777777777777666
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.9e-05 Score=79.62 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=39.4
Q ss_pred ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEc
Q 040849 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449 (809)
Q Consensus 370 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 449 (809)
..++.|++++|.+.. +|. -..+|++|+++++.--..+|+.+ .++|++|++++|.....+|. +|+.|++
T Consensus 52 ~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred cCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEe
Confidence 347777777776653 341 12357777776633223455444 24677777777732223332 3556666
Q ss_pred ccccC
Q 040849 450 DKNML 454 (809)
Q Consensus 450 ~~N~l 454 (809)
+.|..
T Consensus 120 ~~n~~ 124 (426)
T PRK15386 120 KGSAT 124 (426)
T ss_pred CCCCC
Confidence 55543
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=75.62 Aligned_cols=89 Identities=21% Similarity=0.120 Sum_probs=59.2
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEec-C--------------------------------------
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR-S-------------------------------------- 739 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK~-~-------------------------------------- 739 (809)
+......|...+.||+|+||.||+|...+ ++.||||. .
T Consensus 10 ~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~---g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~ 86 (198)
T cd05144 10 LVKRGVVESLGNQIGVGKESDVYLALDPD---GNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAA 86 (198)
T ss_pred HHHcCchhhcCCccccCcceEEEEEEcCC---CCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHH
Confidence 33333347778999999999999998653 33799981 0
Q ss_pred ---CCCcc--eeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 740 ---IRHRN--LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 740 ---l~H~n--iv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.|++ +.+.++ ....++||||+++++|.+.... .....++.++++++.++|
T Consensus 87 l~~l~~~~i~v~~~~~---------~~~~~lv~e~~~g~~L~~~~~~----------~~~~~~~~~i~~~l~~lh 142 (198)
T cd05144 87 LKALYEEGFPVPKPID---------WNRHAVVMEYIDGVELYRVRVL----------EDPEEVLDEILEEIVKAY 142 (198)
T ss_pred HHHHHHcCCCCCceee---------cCCceEEEEEeCCcchhhcccc----------ccHHHHHHHHHHHHHHHH
Confidence 01221 111111 2345899999999999765421 235678899999999887
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.7e-05 Score=71.24 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=41.8
Q ss_pred cCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccC-CccCCCCCCCCEEEc
Q 040849 124 RLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQI-PSSFGNLSSLEVLSA 202 (809)
Q Consensus 124 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L 202 (809)
+...+||++|.+.. -+.|..+++|.+|.|++|+|+.+.|.--.-+++|+.|.|.+|+|.... -.-+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34455555555531 123555556666666666665444443344555666666666554110 112444555555555
Q ss_pred ccCccc
Q 040849 203 SANQFV 208 (809)
Q Consensus 203 s~N~l~ 208 (809)
-+|.++
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555544
|
|
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=4e-05 Score=76.89 Aligned_cols=96 Identities=21% Similarity=0.360 Sum_probs=73.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCC-CCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSI-RHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l-~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
--+|.++++||+|+||+.+.|+-.-.+. .|||| +.+ .-+.|-..|.+... +.+-
T Consensus 27 G~hyrVGkKIGeGsFG~lf~G~Nl~nne--~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqe-----G~~N 99 (449)
T KOG1165|consen 27 GPHYRVGKKIGEGSFGVLFLGKNLYNNE--PVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQE-----GKYN 99 (449)
T ss_pred cccceeccccccCcceeeecccccccCc--eEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccc-----cchh
Confidence 3479999999999999999998433334 89999 122 34666655554322 5556
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.||+|.. |-+|+|+..-++ +.++..+++-||.|+..-++|+|
T Consensus 100 iLVidLL-GPSLEDLFD~Cg---R~FSvKTV~miA~Qmi~rie~vH 141 (449)
T KOG1165|consen 100 ILVIDLL-GPSLEDLFDLCG---RRFSVKTVAMIAKQMITRIEYVH 141 (449)
T ss_pred hhhhhhh-CcCHHHHHHHhc---CcccHHhHHHHHHHHHHHHHHHH
Confidence 7999988 679998877553 56999999999999999999998
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.4e-05 Score=77.69 Aligned_cols=187 Identities=17% Similarity=0.213 Sum_probs=113.8
Q ss_pred ccCCCCccEEeCCCCCCCccCC----ccccccccCCccccCCCcCc---ccCC-------ccccCCCcCcEEEcccCCCC
Q 040849 95 IGNLSFLRVLDLKNNSFRNEIP----QEIGYLFRLQFLWLDNNTFG---GQIP-------DNISHCVNLESLRLGFNELV 160 (809)
Q Consensus 95 l~~l~~L~~LdLs~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~---~~~p-------~~~~~l~~L~~L~Ls~N~l~ 160 (809)
+..+..+..+|||+|-|...-. ..+++-.+|+.-++++-... ..+| ..+..|++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4457889999999999975433 34556678888888764221 1222 34567889999999999987
Q ss_pred CCCccc----ccCCCCCCEEEcccccCcccCCcc-------------CCCCCCCCEEEcccCcccccCc----ccccCCC
Q 040849 161 GKVPRK----LGSLSKLRTLAVHYNNLSGQIPSS-------------FGNLSSLEVLSASANQFVGQIP----KTLSQLK 219 (809)
Q Consensus 161 ~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p~~-------------~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~ 219 (809)
...|.. +++-+.|++|.|++|.+.-.--.- ..+-+.|++.....|++..-.. ..|..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 766654 466788999999999775211111 2345678888888888753211 1223335
Q ss_pred CccEEEeecCcCCCCc-----chhccCCCCCceeccCCcccccccChhhh---cCCCCCcEEEccCcccc
Q 040849 220 RMRFIGFGVNKLSGEI-----PFSIYNLSSLNYFEFPVNQLQGSLPSDLG---FTLPNLERLNLGENQFT 281 (809)
Q Consensus 220 ~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~p~~~~---~~l~~L~~L~Ls~N~l~ 281 (809)
+|+.+.+..|.|.-.- ...+..+.+|+.||+..|-++-.-...++ ..++.|+.|.+.+|-++
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 7777778777765221 11233456666666666666522211111 12344566666666554
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.3e-05 Score=78.01 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=73.2
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.+....+|.|+.|.|++++++..+. .+||| ..-+.|.||+.+||+.. +..+
T Consensus 94 l~~l~dlGsGtcG~V~k~~~rs~~~--iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~-----n~dV 166 (391)
T KOG0983|consen 94 LENLGDLGSGTCGQVWKMRFRSTGH--IIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFIT-----NTDV 166 (391)
T ss_pred hhhHHhhcCCCccceEEEEEcccce--EEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEee-----CchH
Confidence 4455778999999999999887555 99999 12235999999999876 6678
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yL 808 (809)
+|.||.|. ...+.++++- .+++++.-+-++...+..||.||
T Consensus 167 ~IcMelMs-~C~ekLlkri---k~piPE~ilGk~tva~v~AL~YL 207 (391)
T KOG0983|consen 167 FICMELMS-TCAEKLLKRI---KGPIPERILGKMTVAIVKALYYL 207 (391)
T ss_pred HHHHHHHH-HHHHHHHHHh---cCCchHHhhhhhHHHHHHHHHHH
Confidence 99999984 3556666543 35689988899999999999998
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.9e-05 Score=89.87 Aligned_cols=98 Identities=21% Similarity=0.357 Sum_probs=76.7
Q ss_pred HHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------cCCC---CcceeeEeeeeeccccCC
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSIR---HRNLVKIITSCASVDFQG 759 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l~---H~niv~l~~~~~~~~~~~ 759 (809)
+...+.|.+.+.||+|+||+||+|+..+ ++.||+| .+++ -+-|+.+..++..
T Consensus 694 ~~~~~~~~I~~e~G~g~y~~vy~a~~~~---~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~----- 765 (974)
T KOG1166|consen 694 EVGGEKFCISKEIGEGSYGSVYVATHSN---GKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVF----- 765 (974)
T ss_pred eecceeEEEEeeeccccceEEEEeecCC---CcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHcc-----
Confidence 3445678899999999999999999655 4589999 3555 1334444443332
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++|+||.+.|+|.+++.. .+.++|.-...++.|+++-++.||
T Consensus 766 ~~~S~lv~ey~~~Gtlld~~N~----~~~m~e~lv~~~~~qml~ive~lH 811 (974)
T KOG1166|consen 766 QNASVLVSEYSPYGTLLDLINT----NKVMDEYLVMFFSCQMLRIVEHLH 811 (974)
T ss_pred CCcceeeeeccccccHHHhhcc----CCCCCchhhhHHHHHHHHHHHHHH
Confidence 5668999999999999999973 356899999999999999999998
|
|
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00012 Score=68.27 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=61.9
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCC--cceeeEeeeeeccccCCCceEEEEEe
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRH--RNLVKIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H--~niv~l~~~~~~~~~~~~~~~~lv~E 768 (809)
.+.+|+|.++.||++...+ . .+++| +.++| ..+.+++++... ++..+++||
T Consensus 3 ~~~i~~g~~~~v~~~~~~~--~--~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~-----~~~~~~v~e 73 (155)
T cd05120 3 IKLLKGGLTNRVYLLGTKD--E--DYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGES-----DGWSYLLME 73 (155)
T ss_pred ceecccccccceEEEEecC--C--eEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCC-----CCccEEEEE
Confidence 4779999999999999644 2 68888 23344 477787776433 467899999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|++++.+..+ +......++.+++++++++|
T Consensus 74 ~~~g~~~~~~-----------~~~~~~~~~~~~~~~l~~lh 103 (155)
T cd05120 74 WIEGETLDEV-----------SEEEKEDIAEQLAELLAKLH 103 (155)
T ss_pred ecCCeecccC-----------CHHHHHHHHHHHHHHHHHHh
Confidence 9998877543 45567788999999999988
|
The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00014 Score=68.11 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=57.5
Q ss_pred CcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccC-cccccCCCCccEEE
Q 040849 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQI-PKTLSQLKRMRFIG 225 (809)
Q Consensus 147 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ 225 (809)
.+...+||++|.+... +.|..++.|.+|.|++|+|+...|.--.-+++|+.|.|.+|.|.... -.-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3566788888887532 45777888888888888888666655556677888888888775321 12345566777777
Q ss_pred eecCcCC
Q 040849 226 FGVNKLS 232 (809)
Q Consensus 226 L~~n~l~ 232 (809)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 7666655
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00046 Score=73.68 Aligned_cols=93 Identities=34% Similarity=0.474 Sum_probs=75.3
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCc-ceeeEeeeeeccccCCCc
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHR-NLVKIITSCASVDFQGND 761 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~-niv~l~~~~~~~~~~~~~ 761 (809)
|...+.+|.|+||.||++... ..+|+| +.+.|+ +|+++++++.. ..
T Consensus 2 ~~~~~~l~~g~~~~v~~~~~~-----~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-----~~ 71 (384)
T COG0515 2 YRILRKLGEGSFGEVYLARDR-----KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQD-----EG 71 (384)
T ss_pred ceeEEeecCCCCeEEEEEEec-----cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEec-----CC
Confidence 566788999999999999966 257777 456777 79999998743 55
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++++||+.++++.+++...... ..+.......++.|++.|++|+|
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~H 118 (384)
T COG0515 72 SLYLVMEYVDGGSLEDLLKKIGRK-GPLSESEALFILAQILSALEYLH 118 (384)
T ss_pred EEEEEEecCCCCcHHHHHHhcccc-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999777643211 25888999999999999999998
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=3.1e-05 Score=89.39 Aligned_cols=107 Identities=25% Similarity=0.287 Sum_probs=56.3
Q ss_pred ccCCccccCCCcCc-ccCCcccc-CCCcCcEEEcccCCCCCC-CcccccCCCCCCEEEcccccCcccCCccCCCCCCCCE
Q 040849 123 FRLQFLWLDNNTFG-GQIPDNIS-HCVNLESLRLGFNELVGK-VPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEV 199 (809)
Q Consensus 123 ~~L~~L~Ls~N~l~-~~~p~~~~-~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 199 (809)
.+|++||+++...- ..-|..++ -|++|++|.+++=.+... .-....++++|..||+|+.+++.. ..+++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45777777665332 11222232 356666666666544322 122235566666777776666532 45666666666
Q ss_pred EEcccCcccc-cCcccccCCCCccEEEeecCcC
Q 040849 200 LSASANQFVG-QIPKTLSQLKRMRFIGFGVNKL 231 (809)
Q Consensus 200 L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l 231 (809)
|.+.+=.+.. ..-..+.+|++|+.||+|....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 6665544432 1123445566666666665443
|
|
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00019 Score=69.88 Aligned_cols=92 Identities=18% Similarity=0.089 Sum_probs=53.9
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEec-------------C--------CCCcceeeEeeeeecc------------
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVKR-------------S--------IRHRNLVKIITSCASV------------ 755 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK~-------------~--------l~H~niv~l~~~~~~~------------ 755 (809)
.+.||+|+||+||+|...+ ++.||||. . ..|++...+.+.+...
T Consensus 2 ~~~lg~G~~g~Vy~a~~~~---~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~ 78 (187)
T cd05119 2 GGPIGTGKEADVYLALDGD---GEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAG 78 (187)
T ss_pred CcccccccceeEEEEECCC---CCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcC
Confidence 4679999999999998652 23899991 0 1122222211111000
Q ss_pred ----ccCCCceEEEEEeccCCCChhhh-hcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 ----DFQGNDFKALVYEFMVNGSLEEW-LHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ----~~~~~~~~~lv~Ey~~~GsL~~~-l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
........++||||+++|++... +.... .. .++..++.+++.++.++|
T Consensus 79 ~~~~~~~~~~~~~lv~e~~~g~~~~~~~l~~~~-----~~-~~~~~~~~~~~~~l~~lh 131 (187)
T cd05119 79 VPVPKPIDLNRHVLVMEFIGGDGIPAPRLKDVR-----LL-EDPEELYDQILELMRKLY 131 (187)
T ss_pred CCCCceEecCCCEEEEEEeCCCCccChhhhhhh-----hc-ccHHHHHHHHHHHHHHHh
Confidence 00001235899999999654321 21110 11 567889999999999998
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00068 Score=65.74 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=56.4
Q ss_pred cccceeccCCceeEEEEEECCCCceeEEEEe------------------------cCC-CCcceeeEeeeeeccccCCCc
Q 040849 707 SLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSI-RHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 707 ~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l-~H~niv~l~~~~~~~~~~~~~ 761 (809)
.....+++|+||+||.+..++ . .++.+ +++ +|++|.+++++ .
T Consensus 5 ~~~~~l~~~~f~~v~~~~~~~--~--k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~---------~ 71 (218)
T PRK12274 5 AVNEPLKSDTFGRILLVRGGE--R--KFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW---------D 71 (218)
T ss_pred ccceeecCCCcceEEEeecCC--c--eeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE---------c
Confidence 345789999999999777432 2 44433 456 45788888886 1
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+++|||++|++|.+.+.. ....++.|++++++|+|
T Consensus 72 ~~~lvmeyI~G~~L~~~~~~-----------~~~~~~~qi~~~L~~lH 108 (218)
T PRK12274 72 GRHLDRSYLAGAAMYQRPPR-----------GDLAYFRAARRLLQQLH 108 (218)
T ss_pred CEEEEEeeecCccHHhhhhh-----------hhHHHHHHHHHHHHHHH
Confidence 36999999999998754321 12347789999999998
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0001 Score=85.19 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=53.5
Q ss_pred cCCCCCcEEEccCccccccCCcccccCCCCceEecCCCccee--eCCCCCCCCCCcEEEeccccCCCCCCCchhhhhccc
Q 040849 265 FTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG--KVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLV 342 (809)
Q Consensus 265 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 342 (809)
..+|+|..||+|+..++.. ..++.+++|+.|.+.+=.+.. .+-.+.++++|+.||+|...........-.++..-.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 3677777777777777633 556667777777666555542 122356677777777776655443321222333333
Q ss_pred ccCCccEEecccccccccc
Q 040849 343 NASRLELLGININNFGGML 361 (809)
Q Consensus 343 ~~~~L~~L~l~~n~~~~~~ 361 (809)
.+++|+.||.|++.+...+
T Consensus 248 ~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEEI 266 (699)
T ss_pred cCccccEEecCCcchhHHH
Confidence 4555555555555554443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00061 Score=61.69 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=34.4
Q ss_pred ccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCC
Q 040849 119 IGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198 (809)
Q Consensus 119 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 198 (809)
|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|.++++|+.+.+.. .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444432 233233334444444444444442 3333333344444455555433 22222233444445555
Q ss_pred EEEcccCcccccCcccccCCCCccEEEe
Q 040849 199 VLSASANQFVGQIPKTLSQLKRMRFIGF 226 (809)
Q Consensus 199 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 226 (809)
.+++..+ +.......|.+. +|+.+.+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 5554433 332333334443 4444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0017 Score=58.80 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=17.0
Q ss_pred CccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCC
Q 040849 510 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRG 564 (809)
Q Consensus 510 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 564 (809)
.|..+++|+.+++..+ +.......|.++ .|+.+.+.. .++......|.++++
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 4444555555555443 333344444444 555555443 333233344444433
|
|
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00012 Score=73.44 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=60.4
Q ss_pred CCCCcceeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 739 SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 739 ~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+.|.|||+++.|+.+..+++......+.|||+.|++..+|++.+...+.+....-.+++-||..||.|||
T Consensus 123 qlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLh 193 (458)
T KOG1266|consen 123 QLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLH 193 (458)
T ss_pred HHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 35699999999998876666667788999999999999999976555566777777889999999999998
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00065 Score=74.28 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=57.6
Q ss_pred cCCCCcceeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 738 RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 738 ~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+.|.|+.+++|.|.. +...++|.+||..|+|.+.+... ...++|--...++++|+.||+|+|
T Consensus 2 ~~l~h~n~~~f~g~~~~-----~~~~~~i~~~c~rGsl~D~i~~~---~~~~d~~F~~s~~rdi~~Gl~ylh 65 (484)
T KOG1023|consen 2 RQLDHDNLNKFIGASVD-----GPEMIVIWEYCSRGSLLDILSNE---DIKLDYFFILSFIRDISKGLAYLH 65 (484)
T ss_pred cccchhhhhhheeeEec-----CCceEEEEeeecCccHHhHHhcc---ccCccHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999986 57899999999999999999864 356899999999999999999999
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00021 Score=70.06 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=41.8
Q ss_pred CCCCccEEeCCCCCCCccCCccccccccCCccccCCC--cCcccCCccccCCCcCcEEEcccCCCCCCCcccc---cCCC
Q 040849 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNN--TFGGQIPDNISHCVNLESLRLGFNELVGKVPRKL---GSLS 171 (809)
Q Consensus 97 ~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~ 171 (809)
.+..|+.|++.+..++.. ..|-.|++|++|.+|.| ++++.++.-...+++|++|+|+.|++.. +.++ ..+.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 344555555555554421 23445666666666666 4444444444445666666666666542 2222 3334
Q ss_pred CCCEEEcccccC
Q 040849 172 KLRTLAVHYNNL 183 (809)
Q Consensus 172 ~L~~L~Ls~N~l 183 (809)
+|..|++.+|..
T Consensus 117 nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 117 NLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCc
Confidence 444555555443
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00023 Score=71.29 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=69.0
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc-CCCc
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF-QGND 761 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~~~~ 761 (809)
.|.-...+|.|.= .|..|. +.-.++.||+| ..+.|+||++++.++....+ +...
T Consensus 18 Ry~nL~p~~~g~~-~v~~a~--D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~ 94 (369)
T KOG0665|consen 18 RYVNLKPIGSGAQ-IVVAAF--DQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQ 94 (369)
T ss_pred eeeeecccCCCCc-eEEecc--hhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHH
Confidence 3555566777765 444444 32234478888 35789999999999765322 1224
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||. ++|.+.++. .++-.+...|..|++.|+.|||
T Consensus 95 e~y~v~e~m~-~nl~~vi~~------elDH~tis~i~yq~~~~ik~lh 135 (369)
T KOG0665|consen 95 EVYLVMELMD-ANLCQVILM------ELDHETISYILYQMLCGIKHLH 135 (369)
T ss_pred hHHHHHHhhh-hHHHHHHHH------hcchHHHHHHHHHHHHHHHHHH
Confidence 5799999995 599988873 2677889999999999999998
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0005 Score=67.44 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=38.1
Q ss_pred CCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccc--cCcccCCccCCCCCCCCEEEcccCcccccCcc---cccCCC
Q 040849 145 HCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN--NLSGQIPSSFGNLSSLEVLSASANQFVGQIPK---TLSQLK 219 (809)
Q Consensus 145 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~ 219 (809)
.+..|+.|++.+..++.. ..|-.|++|+.|.+|.| ++++.++-....+++|++|++++|++.. +. .+..+.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 334444444444444321 23344555555555555 4444344334444556666666665542 11 123344
Q ss_pred CccEEEeecCcC
Q 040849 220 RMRFIGFGVNKL 231 (809)
Q Consensus 220 ~L~~L~L~~n~l 231 (809)
+|..|++.+|..
T Consensus 117 nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 117 NLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCc
Confidence 455555555443
|
|
| >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0014 Score=73.49 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=26.2
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK 737 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK 737 (809)
..+|+. +.+|+|++|+||+|++++.++ .||||
T Consensus 119 F~~fd~-~PlasaSiaQVh~A~l~~~G~--~VAVK 150 (537)
T PRK04750 119 FDDFDI-KPLASASIAQVHFARLKDNGR--EVVVK 150 (537)
T ss_pred HHhcCh-hhhcCCCccEEEEEEECCCCC--EEEEE
Confidence 345776 789999999999999876334 89999
|
|
| >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.003 Score=63.23 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=63.8
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCC--cceeeEeeeeeccccCCCceEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRH--RNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H--~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
+.++.|.++.||+++..++ . .+++| +.+++ ..+.+++.++.... ..+..++|
T Consensus 4 ~~l~~G~~n~~~~v~~~~g-~--~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~--~~~~~~~v 78 (223)
T cd05154 4 RQLSGGQSNLTYLLTAGGG-R--RLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPS--VLGTPFYV 78 (223)
T ss_pred eecCCCccceEEEEEecCC-c--ceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCC--ccCCceEE
Confidence 5789999999999987542 2 68888 11222 33455666543210 01356899
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||++|+++.+.+.. ..++..++..++.+++++|++||
T Consensus 79 ~e~i~G~~l~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH 116 (223)
T cd05154 79 MERVDGRVLRDRLLR-----PELSPEERRALARALADTLAALH 116 (223)
T ss_pred EEEeCCEecCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999988776531 23778889999999999999998
|
This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain |
| >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0036 Score=63.33 Aligned_cols=87 Identities=10% Similarity=0.011 Sum_probs=57.0
Q ss_pred cceec-cCCceeEEEEEECCCCceeEEEEe---------------------------------cCCCCcce--eeEeeee
Q 040849 709 ENLIG-AGSFGSVYKGILNHDDHETLVAVK---------------------------------RSIRHRNL--VKIITSC 752 (809)
Q Consensus 709 ~~~ig-~G~~g~Vy~~~~~~~~~~~~vavK---------------------------------~~l~H~ni--v~l~~~~ 752 (809)
..++| .||.|+||+++..+. .++|| ..++|++| ++.+++.
T Consensus 36 ~~~lg~~~g~gtv~~v~~~~~----~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~ 111 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTPGV----NWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAAR 111 (239)
T ss_pred CceeecCCCCccEEEEEeCCc----eEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeee
Confidence 35788 899999999886432 56665 23556664 6666664
Q ss_pred eccccCCCceEEEEEeccCC-CChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 753 ASVDFQGNDFKALVYEFMVN-GSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 753 ~~~~~~~~~~~~lv~Ey~~~-GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.... ......++||||+++ ++|.+++... .++.. .+.++++++++||
T Consensus 112 ~~~~-~~~~~~~lV~e~l~G~~~L~~~l~~~-----~l~~~----~~~~i~~~l~~lH 159 (239)
T PRK01723 112 VVRH-GLFYRADILIERIEGARDLVALLQEA-----PLSEE----QWQAIGQLIARFH 159 (239)
T ss_pred eeec-CcceeeeEEEEecCCCCCHHHHHhcC-----CCCHH----HHHHHHHHHHHHH
Confidence 3310 001123599999997 6999888632 24443 3678999999998
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0028 Score=70.17 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=22.6
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK 737 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK 737 (809)
.+.||.|++|.||+|+++++ . .||||
T Consensus 122 ~~plasaSigQVh~A~l~~G-~--~VaVK 147 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDG-K--EVAVK 147 (437)
T ss_pred CcceeeeehhheEEEEecCC-C--EEEEE
Confidence 36899999999999998765 3 79999
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.006 Score=65.65 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=55.5
Q ss_pred cCCCCcceeeEeeeeeccccCCCceEEEEEeccCC-CChhhhhcCCC-----------CCCCCCCHHHHHHHHHHHHHHh
Q 040849 738 RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVN-GSLEEWLHPKP-----------EAPRNSNLLQRLSIAVDVASAL 805 (809)
Q Consensus 738 ~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~-GsL~~~l~~~~-----------~~~~~~~~~~~~~i~~~ia~gl 805 (809)
+++.|+|||++.+++....|. +..+.+||+|.|+ ++|.++-.... .++...++...+.|+.|++.||
T Consensus 328 kkl~h~NvV~frevf~t~tF~-D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL 406 (655)
T KOG3741|consen 328 KKLCHTNVVPFREVFLTYTFG-DLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAAL 406 (655)
T ss_pred HHhccCceeehhhhhhhhccC-cceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHH
Confidence 578899999999987754343 5678999999997 57877654321 2334577899999999999999
Q ss_pred hhcC
Q 040849 806 DYLH 809 (809)
Q Consensus 806 ~yLH 809 (809)
.|+|
T Consensus 407 ~sIH 410 (655)
T KOG3741|consen 407 YSIH 410 (655)
T ss_pred HHHH
Confidence 9999
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0023 Score=66.13 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=47.0
Q ss_pred CCCcceeeEeeeeecc----------------------ccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHH
Q 040849 740 IRHRNLVKIITSCASV----------------------DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSI 797 (809)
Q Consensus 740 l~H~niv~l~~~~~~~----------------------~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i 797 (809)
-+|||||++.+++.+. .+..+..+|+||.-.+. +|.+++..+. .+...+.-|
T Consensus 273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~-----~s~r~~~~~ 346 (598)
T KOG4158|consen 273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRH-----RSYRTGRVI 346 (598)
T ss_pred CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCC-----CchHHHHHH
Confidence 4799999999875432 01235668999987754 8999987432 344566778
Q ss_pred HHHHHHHhhhcC
Q 040849 798 AVDVASALDYLH 809 (809)
Q Consensus 798 ~~~ia~gl~yLH 809 (809)
..|+++|+.|||
T Consensus 347 laQlLEav~hL~ 358 (598)
T KOG4158|consen 347 LAQLLEAVTHLH 358 (598)
T ss_pred HHHHHHHHHHHH
Confidence 899999999997
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.0062 Score=69.89 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=65.0
Q ss_pred ccceeccCCceeEEEEEECCCCc---eeEEEE---e------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 708 LENLIGAGSFGSVYKGILNHDDH---ETLVAV---K------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 708 ~~~~ig~G~~g~Vy~~~~~~~~~---~~~vav---K------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
...++|.|++|.|+.+....... ...+++ + ..++|||++.....+.. ....
T Consensus 322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~-----~~~~ 396 (601)
T KOG0590|consen 322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQE-----IDGI 396 (601)
T ss_pred ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhh-----cccc
Confidence 45788999999777665332111 112222 1 56899999887776544 3334
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+-+||||++ ||+.++... ..+...++.-++.|+..|+.|+|
T Consensus 397 ~~~mE~~~~-Dlf~~~~~~----~~~~~~e~~c~fKqL~~Gv~y~h 437 (601)
T KOG0590|consen 397 LQSMEYCPY-DLFSLVMSN----GKLTPLEADCFFKQLLRGVKYLH 437 (601)
T ss_pred hhhhhcccH-HHHHHHhcc----cccchhhhhHHHHHHHHHHHHHH
Confidence 444999999 999999743 34778889999999999999998
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.0056 Score=35.86 Aligned_cols=19 Identities=47% Similarity=0.726 Sum_probs=9.1
Q ss_pred CCEEEccccccccccCcccc
Q 040849 517 LGVLDVSENKLSGEIPNSLG 536 (809)
Q Consensus 517 L~~L~Ls~N~l~~~~p~~~~ 536 (809)
|++|||++|+|+ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444343
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.00097 Score=65.54 Aligned_cols=95 Identities=25% Similarity=0.284 Sum_probs=69.7
Q ss_pred EEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccc-hhhcCCCCCCEEeCCCC
Q 040849 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIP-SSFSSLRGIENLDLSRN 573 (809)
Q Consensus 495 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N 573 (809)
.|+.-++.++.+ .....++.|+.|.||-|+|+..-| +..|++|++|+|..|.|..... .-+.++++|+.|.|..|
T Consensus 23 KLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 23 KLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 455555555422 123457888999999999885544 7789999999999999885432 23678999999999999
Q ss_pred Cccccccc-----ccccCCCCCeEE
Q 040849 574 NLSGRIPK-----YFENFLFLQNLN 593 (809)
Q Consensus 574 ~l~~~~p~-----~~~~l~~L~~l~ 593 (809)
.-.|.-+. .+.-+++|++||
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 98887765 355677777776
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.0013 Score=64.61 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCC
Q 040849 170 LSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232 (809)
Q Consensus 170 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 232 (809)
+.+.+.|++-++.++++ .....++.|++|.|+-|+|+..- .|..+++|+.|+|..|.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc
Confidence 34445555555555421 22344555555555555555332 2444444444444444443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.0062 Score=73.61 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=52.3
Q ss_pred cCCCC-cceeeEeeeeecccc--CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 738 RSIRH-RNLVKIITSCASVDF--QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 738 ~~l~H-~niv~l~~~~~~~~~--~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..+| +||+++++++..... .+.+.++.++||+ +++|+++|+.. ...+++.+++.|++||++||+|||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH 97 (793)
T PLN00181 27 KSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNP---DRSVDAFECFHVFRQIVEIVNAAH 97 (793)
T ss_pred chhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcc---cccccHHHHHHHHHHHHHHHHHHH
Confidence 56778 799999998632111 1234578889988 56999999743 245899999999999999999999
|
|
| >cd05151 ChoK Choline Kinase (ChoK) | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.017 Score=55.06 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=50.0
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCccee-eEeeeeeccccCCCceEEEEEe
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV-KIITSCASVDFQGNDFKALVYE 768 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv-~l~~~~~~~~~~~~~~~~lv~E 768 (809)
.+.++.|.++.||+++..+ . .|++| +.+.+.+++ +++++. ....++|||
T Consensus 3 ~~~l~~G~~~~vy~~~~~~--~--~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~-------~~~~~lv~e 71 (170)
T cd05151 3 ISPLKGGMTNKNYRVEVAN--K--KYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFD-------PETGVLITE 71 (170)
T ss_pred eeecCCcccCceEEEEECC--e--EEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEe-------CCCCeEEEE
Confidence 3578999999999998642 2 78988 112223333 334331 223589999
Q ss_pred ccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 769 FMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 769 y~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++.++.+.- . ....++.+++++++.||
T Consensus 72 ~i~G~~l~~~~---------~---~~~~~~~~l~~~l~~LH 100 (170)
T cd05151 72 FIEGSELLTED---------F---SDPENLEKIAKLLKKLH 100 (170)
T ss_pred ecCCCcccccc---------c---cCHHHHHHHHHHHHHHh
Confidence 99998875430 0 11235678889998887
|
The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.0083 Score=35.14 Aligned_cols=19 Identities=58% Similarity=0.861 Sum_probs=9.1
Q ss_pred CCEEeCcCCccccccchhhc
Q 040849 541 LEQLGMNGNFFQGNIPSSFS 560 (809)
Q Consensus 541 L~~L~Ls~N~l~~~~p~~~~ 560 (809)
|++|||++|+|+ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 809 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 6e-42 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 7e-42 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-19 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-12 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-11 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 7e-10 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 1e-08 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 4e-07 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 4e-07 | ||
| 4fmz_A | 347 | Crystal Structure Of An Internalin (Inlf) From List | 2e-06 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 4e-05 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 4e-05 | ||
| 3p86_A | 309 | Crystal Structure Of Ctr1 Kinase Domain Mutant D676 | 2e-04 | ||
| 3ppz_A | 309 | Crystal Structure Of Ctr1 Kinase Domain In Complex | 2e-04 | ||
| 3m18_A | 251 | Crystal Structure Of Variable Lymphocyte Receptor V | 6e-04 | ||
| 3eyg_A | 290 | Crystal Structures Of Jak1 And Jak2 Inhibitor Compl | 7e-04 | ||
| 4e4l_A | 302 | Jak1 Kinase (Jh1 Domain) In Complex With Compound 3 | 7e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251 | Back alignment and structure |
|
| >pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290 | Back alignment and structure |
|
| >pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 809 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-157 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-144 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 9e-26 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 6e-21 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 2e-93 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 2e-81 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 3e-89 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 9e-66 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 7e-51 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-81 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-78 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-73 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 7e-67 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 6e-42 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 7e-10 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-80 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-70 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-64 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-53 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 6e-36 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 1e-26 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-23 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 1e-72 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-26 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 4e-05 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-69 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 6e-52 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 1e-43 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 7e-65 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 1e-58 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-29 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 3e-23 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 1e-08 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 4e-52 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 5e-24 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 4e-48 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 3e-43 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 3e-41 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 5e-12 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 8e-45 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 3e-41 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 4e-30 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 7e-26 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-19 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 3e-13 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 5e-11 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 4e-10 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 5e-07 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 1e-44 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 3e-32 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 3e-30 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 8e-27 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 1e-07 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 6e-41 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 7e-38 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 3e-36 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 7e-36 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 3e-19 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 8e-15 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 5e-13 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 3e-38 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 9e-38 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 2e-36 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 6e-36 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 3e-32 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 4e-20 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 7e-18 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 6e-08 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-37 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-36 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 2e-33 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 3e-32 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 9e-19 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 8e-34 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 3e-29 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-24 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-20 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-11 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-06 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 5e-33 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 7e-31 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 9e-28 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 3e-26 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-31 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 6e-28 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 2e-25 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 9e-14 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 7e-07 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 9e-06 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 1e-31 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 5e-31 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 2e-14 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 7e-04 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 2e-31 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 5e-27 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 3e-25 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 7e-25 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 2e-15 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 3e-15 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 3e-31 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 4e-31 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 2e-27 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-26 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 2e-25 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-23 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 4e-11 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 1e-30 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 2e-16 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 2e-14 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 3e-09 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 9e-06 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 9e-30 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 4e-25 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 2e-23 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 2e-20 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 8e-13 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 1e-28 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 6e-28 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 2e-27 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 1e-26 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 2e-26 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 2e-28 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 3e-26 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 2e-21 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 8e-20 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 1e-17 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 6e-17 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 1e-16 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 1e-24 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 3e-22 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 7e-18 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 3e-17 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 6e-24 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 9e-21 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 8e-17 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 2e-14 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 1e-10 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 6e-24 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 2e-23 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 4e-10 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 1e-07 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 1e-23 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 3e-23 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 8e-23 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 1e-14 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 1e-14 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 2e-13 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 2e-13 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 7e-07 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 4e-23 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 3e-20 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 5e-20 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 5e-17 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 4e-14 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 8e-10 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 7e-08 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 1e-22 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 4e-21 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 1e-17 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 5e-17 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 5e-13 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 3e-10 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 3e-22 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 2e-20 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 2e-19 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 4e-19 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 7e-09 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 5e-22 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 5e-19 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 6e-19 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 5e-16 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 6e-22 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 5e-21 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-17 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 7e-17 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 1e-15 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 3e-15 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 9e-08 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 9e-22 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 1e-21 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 2e-18 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 6e-14 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 4e-13 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 1e-12 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 7e-10 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 8e-06 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 8e-05 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 2e-17 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 2e-17 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 6e-17 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 3e-12 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 6e-12 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 5e-11 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 2e-06 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 9e-17 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 4e-15 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 4e-13 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 4e-10 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 2e-09 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 3e-09 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 3e-04 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 9e-17 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 9e-13 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-11 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 4e-11 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-04 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 1e-16 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 2e-06 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 1e-04 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 1e-04 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 2e-16 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 4e-15 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 4e-14 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 3e-13 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 3e-12 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 1e-10 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 4e-06 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 2e-16 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 3e-16 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 8e-14 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 1e-11 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 1e-10 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 7e-09 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 2e-08 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 4e-16 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 4e-16 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 1e-10 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 5e-09 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 4e-07 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 2e-06 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 1e-04 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 4e-16 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 5e-16 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 7e-16 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 8e-16 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 9e-16 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 2e-15 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 3e-15 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 4e-15 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 7e-11 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 2e-10 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 3e-10 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 2e-08 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 4e-06 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 5e-15 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 3e-09 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 4e-07 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 6e-15 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 1e-14 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 3e-14 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 4e-14 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 5e-14 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 7e-14 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 4e-13 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 6e-13 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 2e-11 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 4e-08 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 9e-07 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 3e-04 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 6e-13 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 8e-13 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 5e-10 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 8e-08 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 5e-07 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 2e-04 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 8e-13 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 1e-12 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 1e-12 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 2e-12 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 2e-12 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 2e-12 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 3e-12 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 3e-12 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 3e-12 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 3e-12 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 3e-12 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 4e-12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 4e-12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 5e-11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 4e-08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 3e-06 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 4e-12 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 4e-12 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 5e-12 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 6e-12 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 9e-12 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 9e-12 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 1e-11 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 1e-11 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 1e-11 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 1e-11 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 2e-11 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 2e-11 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 2e-11 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 2e-11 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 2e-11 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 2e-11 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 3e-11 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 3e-11 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 4e-11 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 5e-11 | |
| 3zzw_A | 289 | Tyrosine-protein kinase transmembrane receptor RO; | 7e-11 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 8e-11 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 8e-11 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 8e-11 | |
| 3v5q_A | 297 | NT-3 growth factor receptor; kinase domain, kinase | 9e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 1e-10 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 1e-10 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 2e-10 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 7e-10 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 5e-08 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 4e-06 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 3e-05 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 1e-04 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 3e-04 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 9e-10 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 1e-08 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 1e-08 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 7e-05 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 2e-04 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 1e-09 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 2e-09 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 5e-09 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 7e-09 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 1e-07 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 8e-07 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 2e-05 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 6e-05 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 3e-09 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 3e-09 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 5e-09 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 2e-08 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 3e-07 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 9e-06 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 7e-05 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 3e-04 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 3e-09 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 4e-09 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 4e-09 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 1e-08 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 3e-08 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 9e-07 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 5e-05 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 1e-08 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 2e-08 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 2e-08 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 2e-08 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 3e-08 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 4e-08 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 6e-08 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 2e-06 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 7e-05 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 4e-04 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 9e-08 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 5e-05 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 7e-05 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 5e-04 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 1e-07 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 5e-06 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 1e-05 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 1e-04 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 1e-07 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 2e-06 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 2e-07 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 3e-07 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 3e-07 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 5e-07 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 7e-07 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 8e-07 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 9e-07 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 9e-06 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 2e-05 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 3e-05 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 1e-06 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 4e-04 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 5e-04 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 5e-04 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 1e-06 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 1e-06 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 2e-06 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 3e-04 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 2e-06 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 2e-06 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 2e-06 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 3e-06 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 3e-06 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 3e-06 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 1e-05 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 7e-05 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 2e-04 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 3e-04 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 4e-06 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 4e-06 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 5e-06 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 6e-06 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 7e-06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 7e-06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 2e-04 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 8e-06 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 4e-05 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 6e-05 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 8e-05 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 5e-04 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 8e-06 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 1e-05 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 2e-05 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 1e-04 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 1e-04 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 2e-04 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 3e-04 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 2e-05 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 3e-05 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 4e-05 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 4e-05 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 4e-05 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 5e-05 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 5e-05 | |
| 4apc_A | 350 | Serine/threonine-protein kinase NEK1; transferase; | 6e-05 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 6e-05 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 7e-05 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-04 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-04 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 8e-05 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 2e-04 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 3e-04 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 3e-04 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 5e-04 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 6e-04 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 7e-04 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 7e-04 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 8e-04 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 9e-04 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 9e-04 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 477 bits (1229), Expect = e-157
Identities = 171/568 (30%), Positives = 256/568 (45%), Gaps = 26/568 (4%)
Query: 87 LQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHC 146
+ P +G+ S L+ LD+ N + + I L+ L + +N F G IP
Sbjct: 212 FSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPL 268
Query: 147 VNLESLRLGFNELVGKVPRKL-GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASAN 205
+L+ L L N+ G++P L G+ L L + N+ G +P FG+ S LE L+ S+N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 206 QFVGQIPK-TLSQLKRMRFIGFGVNKLSGEIPFSIYNLS-SLNYFEFPVNQLQGSLPSDL 263
F G++P TL +++ ++ + N+ SGE+P S+ NLS SL + N G + +L
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 264 G-FTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVS 321
L+ L L N FTG IP ++SN S L+ L + N SG +P S G+L KL+ +
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 322 ISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQ 381
+ +N L GE L+ LE L ++ N+ G +P + N T L + + NN+
Sbjct: 449 LWLNML-EGE-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNR 501
Query: 382 LFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNL 441
L G IP + L NL L L N F+G IP +GD L L L N F G IP+++
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 442 TLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNN--NLTGTIPTEVIGLSSLSIYLDLS 499
+ I N + G + + N G ++ LS+ +++
Sbjct: 562 SGKIAA----NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR-NPCNIT 616
Query: 500 QNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSF 559
G F ++ LD+S N LSG IP +GS L L + N G+IP
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 560 SSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDG 619
LRG+ LDLS N L GRIP+ L ++LS N+ G +P G F
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Query: 620 NDNLCGGISELHLSTCSIKESKQSRSRS 647
N LCG L C +
Sbjct: 737 NPGLCG----YPLPRCDPSNADGYAHHQ 760
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 443 bits (1141), Expect = e-144
Identities = 181/646 (28%), Positives = 281/646 (43%), Gaps = 39/646 (6%)
Query: 30 SNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQ- 88
S + L+ FK + L L W+ +++ C + GVTC +VT++ L S L
Sbjct: 9 SLYREIHQLISFKDVLPDKNL--LPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNV 64
Query: 89 --GSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NIS 144
++S + +L+ L L L N+ + L L L N+ G + ++
Sbjct: 65 GFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLG 123
Query: 145 HCVNLESLRLGFNELVGKVPRKLG-SLSKLRTLAVHYNNLSGQIPSSF---GNLSSLEVL 200
C L+ L + N L G L+ L L + N++SG + L+ L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183
Query: 201 SASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLP 260
+ S N+ G + +S+ + F+ N S IP + + S+L + + N+L G
Sbjct: 184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFS 240
Query: 261 SDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS--FGNLHKLQ 318
+ T L+ LN+ NQF GPIP L L++ N F+G++P G L
Sbjct: 241 RAIS-TCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 319 WVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLP-EAVGNLSTRLRILRV 377
+ +S NH G + S LE L ++ NNF G LP + + + L++L +
Sbjct: 298 GLDLSGNHF-YG-----AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLDL 350
Query: 378 GNNQLFGNIPSGLRNL-VNLERLLLEGNQFTGRIPGSIGD--LHKLQRLGLQGNKFLGEI 434
N+ G +P L NL +L L L N F+G I ++ + LQ L LQ N F G+I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 435 PSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSI 494
P ++ N + L++L N L G+IPSSLG L L L N L G IP E++ + +L
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE- 469
Query: 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554
L L N L G +PS NL + +S N+L+GEIP +G L L ++ N F GN
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 555 IPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK-GVFSNSS 613
IP+ R + LDL+ N +G IP +F Q+ ++ N G+ +
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPA----AMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 614 AVSLDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIPIVTGIL 659
GN GI L+ S + SR
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 9e-26
Identities = 36/130 (27%), Positives = 54/130 (41%)
Query: 85 LLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNIS 144
L QG S + LS ++ + + + FL + N G IP I
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 145 HCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASA 204
L L LG N++ G +P ++G L L L + N L G+IP + L+ L + S
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 205 NQFVGQIPKT 214
N G IP+
Sbjct: 714 NNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 6e-21
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFG 136
+ S + G SP N + LD+ N IP+EIG + L L L +N
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 137 GQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSS--FGNL 194
G IPD + L L L N+L G++P+ + +L+ L + + NNLSG IP F
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 195 SS 196
Sbjct: 730 PP 731
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = 2e-93
Identities = 86/309 (27%), Positives = 133/309 (43%), Gaps = 14/309 (4%)
Query: 335 LEFVNSLVNASRL----ELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFG--NIPS 388
L+ L N + L + G+L + + R+ L + L IPS
Sbjct: 12 LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPS 70
Query: 389 GLRNLVNLERLLLEG-NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447
L NL L L + G N G IP +I L +L L + G IP + + L+TL
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 448 SFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTL 507
F N L G++P S+ NL+ + N ++G IP S L + +S+N+L G +
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 508 PSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIEN 567
P F L NL +D+S N L G+ GS +++ + N ++ + +
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248
Query: 568 LDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGI 627
LDL N + G +P+ FL +LN+SFN+ GE+P G + N LCG
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS- 307
Query: 628 SELHLSTCS 636
L C+
Sbjct: 308 ---PLPACT 313
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 2e-81
Identities = 87/303 (28%), Positives = 133/303 (43%), Gaps = 13/303 (4%)
Query: 31 NETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQ--WKGVTCSPRHQ--RVTALLLPSLL 86
N D+ ALL+ K + + LSSW + C W GV C Q RV L L L
Sbjct: 4 NPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 87 LQGS--LSPHIGNLSFLRVLDL-KNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI 143
L + + NL +L L + N+ IP I L +L +L++ + G IPD +
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 144 SHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSL-EVLSA 202
S L +L +N L G +P + SL L + N +SG IP S+G+ S L ++
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 203 SANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSD 262
S N+ G+IP T + L + F+ N L G+ + + N L L
Sbjct: 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239
Query: 263 LGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSI 322
+G NL L+L N+ G +P ++ L L + N G++P GNL + +
Sbjct: 240 VGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
Query: 323 SMN 325
+ N
Sbjct: 299 ANN 301
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 3e-89
Identities = 90/589 (15%), Positives = 182/589 (30%), Gaps = 66/589 (11%)
Query: 53 LSSWNYSRHFCQW---KGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNN 109
++WN+++ W GV+ + + RVT L L G + IG L+ L VL L ++
Sbjct: 57 GANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115
Query: 110 SFR----NEIPQEIGYLFRLQFLWLDNNTFGGQIPDNIS--HCVNLESLRLGFNELVGKV 163
+ P+ I + + D +L + + +
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175
Query: 164 PRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRF 223
+ K + NN++ + + L+ L + FV + + +
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN--- 231
Query: 224 IGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFT-- 281
+ NL L E LP+ L LP ++ +N+ N+
Sbjct: 232 --SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISG 288
Query: 282 ------GPIPASISNASHLMRLTIPINGF-SGKVP-SFGNLHKLQWVSISMNHLGNGEKD 333
A + + I N + V S + KL + N L
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL------ 342
Query: 334 DLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPS--GLR 391
+ + + +L L + N +P + ++ L +N+L IP+ +
Sbjct: 343 -EGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL-KYIPNIFDAK 399
Query: 392 NLVNLERLLLEGNQFTG-------RIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLL 444
++ + + N+ + + + + L N+ + L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459
Query: 445 ITLSFDKNMLEG-------SIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS--IY 495
+++ NML + L + L N LT + + ++L +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDD-FRATTLPYLVG 517
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSE------NKLSGEIPNSLGSCVRLEQLGMNGN 549
+DLS N + P+ L + N+ E P + C L QL + N
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576
Query: 550 FFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNH 598
+ ++ LD+ N Y ++ L ++
Sbjct: 577 DIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 9e-66
Identities = 70/461 (15%), Positives = 144/461 (31%), Gaps = 61/461 (13%)
Query: 167 LGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGF 226
L S ++ L++ SG++P + G L+ LEVL+ ++
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER-------------- 122
Query: 227 GVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF-TLPNLERLNLGENQFTGPIP 285
P I S + Q + +L + + + I
Sbjct: 123 ------LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176
Query: 286 ASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNAS 345
S ++ N + + L KL+ + + +
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPF-----------VAENICE 225
Query: 346 RLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQ 405
E NL L + V N +P+ L+ L ++ + + N+
Sbjct: 226 AWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284
Query: 406 FT--------GRIPGSIGDLHKLQRLGLQGNKFL-GEIPSSIGNLTLLITLSFDKNMLEG 456
+ K+Q + + N + +S+ + L L N LEG
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344
Query: 457 SIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGI--L 514
+P + G L L L+ N +T + L + N+L +P+ F +
Sbjct: 345 KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQV-ENLSFAHNKLK-YIPNIFDAKSV 401
Query: 515 KNLGVLDVSENKLSG-------EIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIEN 567
+ +D S N++ + + + + + ++ N FS+ + +
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461
Query: 568 LDLSRNNLSG-------RIPKYFENFLFLQNLNLSFNHFEG 601
++L N L+ + F+N L +++L FN
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 7e-51
Identities = 75/398 (18%), Positives = 138/398 (34%), Gaps = 38/398 (9%)
Query: 238 SIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGP----IPASISNASH 293
S+ + + G +P +G L LE L LG + P IS
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 294 LMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGIN 353
+ + + + + + + N + S + +G
Sbjct: 135 DEQKQKMRMHYQKTFVD--YDPREDFSDLIKDCI-NSDPQQKSIKKSSRITLKDTQIGQL 191
Query: 354 INNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGS 413
NN + +AV L T+LR +GN+ N E Q
Sbjct: 192 SNNITF-VSKAVMRL-TKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLK 244
Query: 414 IGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNML--------EGSIPSSLGKC 465
+L L + + L ++P+ + L + ++ N + +
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 466 QNLILLGLSNNNL-TGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSE 524
+ + ++ + NNL T + T + + L L+ NQL G LP+ FG L L+++
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLG-MLECLYNQLEGKLPA-FGSEIKLASLNLAY 362
Query: 525 NKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFS--SLRGIENLDLSRNNLSGRIPKY 582
N+++ N G ++E L N + IP+ F S+ + +D S N + K
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Query: 583 FE-------NFLFLQNLNLSFNHFEGEVPIKGVFSNSS 613
F+ + + ++NLS N K +FS S
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGS 457
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 1e-81
Identities = 109/547 (19%), Positives = 188/547 (34%), Gaps = 40/547 (7%)
Query: 87 LQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHC 146
L + L L L +NS + L L L +N
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Query: 147 VNLESLRLGFNELVGKVPRKLGSL--SKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASA 204
NL+ L L N++ +L S L+ L + N + P F + L L +
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 205 NQFVGQIPKTLS---QLKRMRFIGFGVNKLSGEIPFSIYNL--SSLNYFEFPVNQLQGSL 259
Q + + L +R + ++LS + L ++L + N L
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264
Query: 260 PSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP---------- 309
+ LP LE L N S+ ++ L + + +
Sbjct: 265 NDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 310 SFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGI--NINNFGGMLPEAVGN 367
SF L L+ +++ N + N L+ L + + + + E +
Sbjct: 324 SFQWLKCLEHLNMEDNDIPG------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377
Query: 368 LS-TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGS-IGDLHKLQRLGL 425
L+ + L IL + N++ L +LE L L N+ + G L + + L
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 426 QGNKFLGEIPSSIGNLTLLITLSFDKNMLEG--SIPSSLGKCQNLILLGLSNNNLTGTIP 483
NK+L +S + L L + L+ S PS +NL +L LSNNN+
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497
Query: 484 TEVIGLSSLSIYLDLSQNQLN--------GTLPSNFGILKNLGVLDVSENKLSGEIPNSL 535
+ GL L LDL N L G L +L +L++ N
Sbjct: 498 DMLEGLEKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556
Query: 536 GSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFL-FLQNLNL 594
L+ + + N S F++ +++L+L +N ++ K F L L++
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616
Query: 595 SFNHFEG 601
FN F+
Sbjct: 617 RFNPFDC 623
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 266 bits (683), Expect = 1e-78
Identities = 110/560 (19%), Positives = 195/560 (34%), Gaps = 29/560 (5%)
Query: 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFG 136
+T L L L+ + + S L LD+ N+ P+ L L+ L L +N
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 137 GQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSS 196
+ C NL L L N + L TL + +N LS + L +
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 197 LEVLSASANQFVGQIPKTLSQLKRM--RFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQ 254
L+ L S N+ + L + + N++ P + + L Q
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 255 LQGSLPSDLGF--TLPNLERLNLGENQFTGPIPASISN--ASHLMRLTIPINGFSGKVP- 309
L SL L ++ L+L +Q + + ++L L + N +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266
Query: 310 SFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVN---ASRLELLGININNFGGMLPEAVG 366
SF L +L++ + N++ + L + ++ I++ + + +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIG----DLHKLQR 422
L L L + +N + G + L+NL+ L L + + R + L
Sbjct: 327 WL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385
Query: 423 LGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIP-SSLGKCQNLILLGLSNNNLTGT 481
L L NK + L L L N + + +N+ + LS N
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445
Query: 482 IPTEVIGLSSLSIYLDLSQNQLNG--TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCV 539
+ SL L L + L + PS F L+NL +LD+S N ++ + L
Sbjct: 446 TRNSFALVPSLQ-RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504
Query: 540 RLEQLGMNGN--------FFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQN 591
+LE L + N G L + L+L N + F++ L+
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564
Query: 592 LNLSFNHFEGEVPIKGVFSN 611
++L N+ VF+N
Sbjct: 565 IDLGLNNLNTL--PASVFNN 582
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 1e-73
Identities = 109/560 (19%), Positives = 186/560 (33%), Gaps = 51/560 (9%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFN 157
+ + VL+L +N R +L L + NT P+ L+ L L N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 158 ELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQ 217
EL + + L L + N++ + F +L L S N T Q
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 218 LKRMRFIGFGVNKLSGEIP--FSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNL 275
L+ ++ + NK+ I+ SSL E NQ++ P + L L L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFL 202
Query: 276 GENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDL 335
Q + + ++ +S+S + L
Sbjct: 203 NNVQLGPSLTEKLC--------------------LELANTSIRNLSLSNSQLSTTSNTTF 242
Query: 336 EFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVN 395
+ + L +L ++ NN + ++ L +L + N + L L N
Sbjct: 243 ----LGLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSLHGLFN 297
Query: 396 LERLLLEGN---------QFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLIT 446
+ L L+ + S L L+ L ++ N G + L L
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357
Query: 447 LSFDKNMLEGSIPSSLG----KCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQ 502
LS + ++ L +L L+ N ++ L L LDL N+
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE-VLDLGLNE 416
Query: 503 LNGTLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQG--NIPSSF 559
+ L + L+N+ + +S NK NS L++L + + + PS F
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476
Query: 560 SSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDG 619
LR + LDLS NN++ E L+ L+L N+ K L G
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL--ARLWKHANPGGPIYFLKG 534
Query: 620 NDNLCGGISELHLSTCSIKE 639
+L L+L + E
Sbjct: 535 LSHL----HILNLESNGFDE 550
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 7e-67
Identities = 95/486 (19%), Positives = 162/486 (33%), Gaps = 32/486 (6%)
Query: 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
V+ E +L +VP L + + L + +N L ++F S L L N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFT 266
P+ +L ++ + N+LS + ++L N +Q +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-K 119
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTI---PINGFSGKVPSFGNLHKLQWVSIS 323
NL L+L N + + +L L + I + L+ + +S
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179
Query: 324 MNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLS--TRLRILRVGNNQ 381
N + RL L +N G L E + T +R L + N+Q
Sbjct: 180 SNQIKEFSP------GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233
Query: 382 LFGNIPSGLRNL--VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIG 439
L + L NL L L N S L +L+ L+ N S+
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293
Query: 440 NLTLLITLSFDKNMLEGSI---------PSSLGKCQNLILLGLSNNNLTGTIPTEVIGLS 490
L + L+ ++ + SI S + L L + +N++ G GL
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353
Query: 491 SLSIYLDLSQNQLNGTLPSN----FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
+L YL LS + + +N L +L++++NK+S ++ LE L +
Sbjct: 354 NLK-YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Query: 547 NGNFFQGNIP-SSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605
N + + L I + LS N F LQ L L +
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472
Query: 606 KGVFSN 611
F
Sbjct: 473 PSPFQP 478
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 6e-42
Identities = 63/278 (22%), Positives = 100/278 (35%), Gaps = 11/278 (3%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426
+L T + +L + +NQL + L L + N + P L L+ L LQ
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 427 GNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV 486
N+ + T L L N ++ + K +NLI L LS+N L+ T
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGILKN--LGVLDVSENKLSGEIPNSLGSCVRLEQL 544
+ L +L L LS N++ I N L L++S N++ P + RL L
Sbjct: 142 VQLENLQ-ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200
Query: 545 GMNGNFFQGNIPSSFS---SLRGIENLDLSRNNLSGRIPKYFENFLF--LQNLNLSFNHF 599
+N ++ + I NL LS + LS F + L L+LS+N+
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 600 EGEVPIKGVFSN-SSAVSLDGNDNLCGGISELHLSTCS 636
F+ N + L
Sbjct: 261 NV--VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 7e-10
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Query: 82 LPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD 141
L G + LS L +L+L++N F + LF L+ + L N
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578
Query: 142 NISHCVNLESLRLGFNELVGKVPRKLG-SLSKLRTLAVHYNNLSGQIPS 189
++ V+L+SL L N + + G + L L + +N S
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 268 bits (688), Expect = 3e-80
Identities = 103/536 (19%), Positives = 182/536 (33%), Gaps = 28/536 (5%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELV 160
+ LDL N R+ LQ L L +L +L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG-QIPKTLSQLK 219
LS L+ L NL+ G+L +L+ L+ + N ++P+ S L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 220 RMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPV----NQLQGSLPSDLGFTLPNLERLNL 275
+ + NK+ + L + + N + P F L +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--AFKEIRLHKLTL 207
Query: 276 GENQFTGPIPA-SISNASHLMRLTIPINGFSG----KVPSFGNLHKLQWVSISMNHLGNG 330
N + + I + L + + F + L L ++I L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 331 EKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL 390
+ + ++ + + + + + + + L + N + L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKL 324
Query: 391 RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK--FLGEIPSSIGNLTLLITLS 448
++L L +G S DL L+ L L N F G S T L L
Sbjct: 325 KSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 449 FDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQLNGTL 507
N + + S+ + L L ++NL V L +L IYLD+S
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAF 437
Query: 508 PSNFGILKNLGVLDVSENKLSGEI-PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIE 566
F L +L VL ++ N P+ L L ++ + P++F+SL ++
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 567 NLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP--IKGVFSNSSAVSLDGN 620
L++S NN ++ LQ L+ S NH ++ S+ + ++L N
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 2e-70
Identities = 111/562 (19%), Positives = 185/562 (32%), Gaps = 52/562 (9%)
Query: 87 LQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHC 146
+Q +LS L L L N ++ L LQ L I H
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 147 VNLESLRLGFNELVG-KVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEV----LS 201
L+ L + N + K+P +L+ L L + N + + L + + L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 202 ASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIP-FSIYNLSSLNYFEFPVNQLQGS-- 258
S N P ++ R+ + N S + I L+ L + + +
Sbjct: 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKL 317
L L L L + E + ++ + + F L +
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAY------------------LDYYLDDIIDLFNCLTNV 284
Query: 318 QWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRV 377
S+ +E V + L + FG + +L RL
Sbjct: 285 SSFSLVSVT--------IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL-KRLTF--- 332
Query: 378 GNNQLFGNIPSGLRNLVNLERLLLEGNQ--FTGRIPGSIGDLHKLQRLGLQGNKFLGEIP 435
G +L +LE L L N F G S L+ L L N + +
Sbjct: 333 --TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389
Query: 436 SSIGNLTLLITLSFDKNMLEGSIPSS-LGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSI 494
S+ L L L F + L+ S +NLI L +S+ + GLSSL
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE- 448
Query: 495 YLDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQG 553
L ++ N + F L+NL LD+S+ +L P + S L+ L M+ N F
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 554 NIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFL-FLQNLNLSFNHFEGEVPIKGVFS-- 610
+ L ++ LD S N++ + ++F L LNL+ N F +
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 568
Query: 611 -NSSAVSLDGNDNLCGGISELH 631
+ + ++ C S+
Sbjct: 569 KDQRQLLVEVERMECATPSDKQ 590
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 2e-64
Identities = 111/502 (22%), Positives = 173/502 (34%), Gaps = 46/502 (9%)
Query: 138 QIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSL 197
+IPDN+ + ++L L FN L S +L+ L + + ++ +LS L
Sbjct: 21 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 198 EVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257
L + N S L ++ + L+ F I +L +L N +Q
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHL----MRLTIPINGFSGKVPSFGN 313
+ L NLE L+L N+ + + + L + +N + P
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 314 LHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGM--LPEAVGNLSTR 371
+L +++ N + + LE+ + + F L + +
Sbjct: 199 EIRLHKLTLRNNFDSLNVMK-----TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 372 LRILRVGNNQL------FGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425
L L + +L +I L N+ L S Q L L
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLEL 311
Query: 426 QGNKF-------------------LGEIPSSIGNLTLLITLSFDKNML--EGSIPSSLGK 464
KF G S +L L L +N L +G S
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 465 CQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLP-SNFGILKNLGVLDVS 523
+L L LS N + T+ + +GL L +LD + L S F L+NL LD+S
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 524 ENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI-PSSFSSLRGIENLDLSRNNLSGRIPKY 582
LE L M GN FQ N P F+ LR + LDLS+ L P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 583 FENFLFLQNLNLSFNHFEGEVP 604
F + LQ LN+S N+F
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDT 511
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 3e-53
Identities = 92/525 (17%), Positives = 160/525 (30%), Gaps = 75/525 (14%)
Query: 86 LLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISH 145
+ L + NL+ L LDL +N ++ ++ L ++ L L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL--------------- 180
Query: 146 CVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPS-SFGNLSSLEVLSASA 204
SL L N + + +L L + N S + L+ LEV
Sbjct: 181 -----SLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 205 NQFVGQ------IPKTLSQLKRMRFIGFGVNKLS---GEIPFSIYNLSSLNYFEFPVNQL 255
+F + L L + F + L +I L++++ F +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 256 QGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLH 315
+ + L L +F + + L + S +L
Sbjct: 295 ERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN----AFSEVDLP 347
Query: 316 KLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRIL 375
L+++ +S N L +F G ++ T L+ L
Sbjct: 348 SLEFLDLSRNGL----------------------------SFKGCCSQSDFGT-TSLKYL 378
Query: 376 RVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSI-GDLHKLQRLGLQGNKFLGEI 434
+ N + + S L LE L + + S+ L L L +
Sbjct: 379 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 435 PSSIGNLTLLITLSFDKNMLEGSI-PSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS 493
L+ L L N + + P + +NL L LS L PT LSSL
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 494 IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR-LEQLGMNGNFFQ 552
L++S N + L +L VLD S N + L L L + N F
Sbjct: 498 -VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Query: 553 GNIPSS--FSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLS 595
++ L + + P + + +LN++
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 6e-36
Identities = 58/309 (18%), Positives = 101/309 (32%), Gaps = 44/309 (14%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426
NL + L + N L + L+ L L + G+ L L L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 427 GNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGT-IPTE 485
GN + L+ L L + L +G + L L +++N + +P
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 486 VIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGV----LDVSENKLSGEIPNSLGSCVRL 541
L++L +LDLS N++ ++ +L + + LD+S N ++ P + RL
Sbjct: 145 FSNLTNLE-HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202
Query: 542 EQLGMNGNFFQGNIPS----------------------------SFSSLRGIENLDLSRN 573
+L + NF N+ S+L G+ NL +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 574 NLS------GRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGI 627
L+ I F + + +L E N L+ + G
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQF 319
Query: 628 SELHLSTCS 636
L L +
Sbjct: 320 PTLKLKSLK 328
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-26
Identities = 48/215 (22%), Positives = 73/215 (33%), Gaps = 6/215 (2%)
Query: 80 LLLPSLLLQGSLSPHIGNLSFLRVLDLKNN--SFRNEIPQEIGYLFRLQFLWLDNNTFGG 137
L +G + +L L LDL N SF+ Q L++L L N
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 138 QIPDNISHCVNLESLRLGFNELVGKVPRK-LGSLSKLRTLAVHYNNLSGQIPSSFGNLSS 196
+ N LE L + L SL L L + + + F LSS
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 197 LEVLSASANQFVGQI-PKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQL 255
LEVL + N F P ++L+ + F+ +L P + +LSSL N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 256 QGSLPSDLGFTLPNLERLNLGENQFTGPIPASISN 290
L +L+ L+ N + +
Sbjct: 507 FSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQH 540
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 14/195 (7%)
Query: 457 SIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKN 516
IP +L + L LS N L L LDLS+ ++ + L +
Sbjct: 21 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQTIEDGAYQSLSH 77
Query: 517 LGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNL- 575
L L ++ N + + L++L L+ ++ L+++ N +
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 576 SGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTC 635
S ++P+YF N L++L+LS N + L + L LS
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----------DLRVLHQMPLLNLSLDLSLN 187
Query: 636 SIKESKQSRSRSLKL 650
+ + + ++L
Sbjct: 188 PMNFIQPGAFKEIRL 202
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 254 bits (649), Expect = 1e-72
Identities = 111/645 (17%), Positives = 191/645 (29%), Gaps = 87/645 (13%)
Query: 29 KSNETDQLALLEFKAKV----------THDPLEVLSSWNYSRHFCQWKGVTCS--PRHQR 76
D AL + T + +WN+++ W + R
Sbjct: 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR 324
Query: 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFG 136
VT L L +G + IG L+ L+VL +S +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384
Query: 137 GQIPDN-ISHCVNLESLRL------GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPS 189
+ + L L E+ SL + + N I
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG--NLTNRITFISK 442
Query: 190 SFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFE 249
+ L+ L+++ + + F + + K S NL L E
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVE 497
Query: 250 FPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP 309
LP L LP L+ LN+ N+ ++ + L
Sbjct: 498 LYNCPNMTQLPDFLY-DLPELQSLNIACNRGIS-AAQLKADWTRL-------------AD 542
Query: 310 SFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLS 369
K+Q + N+L SL +L LL N EA G
Sbjct: 543 DEDTGPKIQIFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKVRH--LEAFGTN- 594
Query: 370 TRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIP--GSIGDLHKLQRLGLQ 426
+L L++ NQ+ IP +E L N+ IP + ++ + +
Sbjct: 595 VKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFS 652
Query: 427 GNKFLGEIPSSIG------NLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT- 479
NK +G +I T++ N ++ + + LSNN +T
Sbjct: 653 YNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711
Query: 480 ------GTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGI--LKNLGVLDVSENKLSGEI 531
L+ +DL N+L +L +F L L +DVS N S
Sbjct: 712 IPENSLKPKDGNYKNTYLLT-TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SF 768
Query: 532 PNSLGSCVRLEQLG------MNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFEN 585
P + +L+ G GN P+ ++ + L + N++ K
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ 828
Query: 586 FLFLQNLNLSFNHFEGEVPIKGVFSNSSAV----SLDGNDNLCGG 626
L L+++ N + + V A D ++ G
Sbjct: 829 ---LYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYDKTQDIRGC 869
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-26
Identities = 39/289 (13%), Positives = 89/289 (30%), Gaps = 39/289 (13%)
Query: 379 NNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI 438
N + + + + +N E + + + + + ++ L L G G +P +I
Sbjct: 285 NWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343
Query: 439 GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDL 498
G LT L LSF + S + + + + + DL
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403
Query: 499 SQNQLNG----------------------------TLPSNFGILKNLGVLDVSENKLSGE 530
Q+ +N + L L ++ + + + +
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463
Query: 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQ 590
V E + N S+S+L+ + +++L ++P + + LQ
Sbjct: 464 NI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518
Query: 591 NLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTCSIKE 639
+LN++ N A D + ++ +++E
Sbjct: 519 SLNIACNRGIS-AAQLKADWTRLADDEDTGPKI----QIFYMGYNNLEE 562
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 9/112 (8%)
Query: 90 SLSPHIGNLSFLRVLDL------KNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI 143
S N S L+ + + N + P I L L + +N + + +
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL 825
Query: 144 SHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLS 195
+ L L + N + + + + Y+ +
Sbjct: 826 TP--QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 2e-69
Identities = 102/527 (19%), Positives = 176/527 (33%), Gaps = 22/527 (4%)
Query: 87 LQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHC 146
L + L L LDL RL L L N +S
Sbjct: 45 LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104
Query: 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
L+ L + L + L +L + N++S L+VL N
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLS-GEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF 265
+ +S L++ + +N I ++ + F Q + L
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224
Query: 266 -TLPNLERLNLGENQFTGPIPASISN--ASHLMRLTIPINGFSGKVP-SFGNLHKLQWVS 321
T+ +L + PA + + + + F +F LQ +
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284
Query: 322 ISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQ 381
++ HL E + LV S L+ L ++ N F + + N L L + N
Sbjct: 285 LTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNT 336
Query: 382 LFGNIPSG-LRNLVNLERLLLEGNQFT--GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI 438
+ +G L NL NL L L + + +L LQ L L N+ L +
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 439 GNLTLLITLSFDKNMLEGSIP-SSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLD 497
L L L+ S L +L LS++ L + GL +L +L+
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLN 455
Query: 498 LSQNQLNGT---LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554
L N ++ L L +L +S LS ++ S + + ++ N +
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Query: 555 IPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601
+ S L+GI L+L+ N++S +P + +NL N +
Sbjct: 516 SIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 6e-52
Identities = 100/525 (19%), Positives = 173/525 (32%), Gaps = 48/525 (9%)
Query: 87 LQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHC 146
L + L+ L + + L+ L+L +N
Sbjct: 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLS-GQIPSSFGNLSSLEVLSASAN 205
L+ L N + + SL + L+++ N I + + + L+
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Query: 206 QFVGQIPKTLSQLK----------------------------RMRFIGFGVNKLSGEIPF 237
Q + I K L + I +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 238 SIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRL 297
+ + S L + L LPS L L L++L L N+F S SN L L
Sbjct: 273 TFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
Query: 298 TIPINGFSGKVPS--FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININ 355
+I N ++ + NL L+ + +S + + + +L+ N S L+ L ++ N
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL----SHLQSLNLSYN 386
Query: 356 NFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSI 414
+ EA +L +L + +L +NL L+ L L +
Sbjct: 387 EPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 415 GDLHKLQRLGLQGNKFLGEI---PSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILL 471
L LQ L LQGN F +S+ L L L L + + + +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 472 GLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEI 531
LS+N LT + + L + YL+L+ N ++ LPS IL +++ +N L
Sbjct: 506 DLSHNRLTSSSIEALSHLKGI--YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563
Query: 532 PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS 576
N LE N + + + + + LS LS
Sbjct: 564 SNIY----FLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-43
Identities = 66/360 (18%), Positives = 121/360 (33%), Gaps = 17/360 (4%)
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHK 316
+P L + E L N + S +L L + +F + H+
Sbjct: 26 EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82
Query: 317 LQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILR 376
L + ++ N L + +L L+ L + + N L L
Sbjct: 83 LDTLVLTANPLIFMAE------TALSGPKALKHLFFIQTGISSIDFIPLHNQ-KTLESLY 135
Query: 377 VGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK-FLGEIP 435
+G+N + L+ L + N + L + L L N + I
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195
Query: 436 SSIGNLTLLITLSFDKNMLEGSIPSSLGKC--QNLILLGLSNNNLTGTIPTEVIGLSSLS 493
+ + +L+F I L Q+L L + + P GL +S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255
Query: 494 I-YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQ 552
+ ++L ++ + F L LD++ LS E+P+ L L++L ++ N F+
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314
Query: 553 GNIPSSFSSLRGIENLDLSRNNLSGRIPKY-FENFLFLQNLNLSFNHFEGEVPIKGVFSN 611
S S+ + +L + N + EN L+ L+LS + E N
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 7e-65
Identities = 107/522 (20%), Positives = 180/522 (34%), Gaps = 35/522 (6%)
Query: 96 GNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLG 155
N S L+ LDL + L L L L N P + S +LE+L
Sbjct: 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112
Query: 156 FNELVGKVPRKLGSLSKLRTLAVHYNNLSG-QIPSSFGNLSSLEVLSASANQFVGQIPKT 214
+L +G L L+ L V +N + ++P+ F NL++L + S N
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172
Query: 215 LSQLKRMRFIGFGVNKLSG----EIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
L L+ + ++ +S I + L+ N ++ L L
Sbjct: 173 LQFLRENPQVNLSLD-MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIP---------INGFSGKVPSFGNLHKLQWVS 321
L +F I S + L N FS + F L + +S
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291
Query: 322 ISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQ 381
++ ++++ + + + L I + L+ L + N+
Sbjct: 292 LAGVS--------IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTMNK 339
Query: 382 LFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDL--HKLQRLGLQGNKFLGEIPSSIG 439
+I L +L L L N + S DL + L+ L L N + ++
Sbjct: 340 G--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFM 396
Query: 440 NLTLLITLSFDKNMLEGSIP-SSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDL 498
L L L F + L+ S+ + L+ L +S N +GL+SL+ L +
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN-TLKM 455
Query: 499 SQNQLNGTLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPS 557
+ N SN F NL LD+S+ +L + RL+ L M+ N S
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
Query: 558 SFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHF 599
++ L + LD S N + L NL+ N
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 1e-58
Identities = 99/540 (18%), Positives = 171/540 (31%), Gaps = 34/540 (6%)
Query: 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNE 158
S + +DL N + LQ+L L +L +L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 159 LVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG-QIPKTLSQ 217
+ P L+ L L L+ G L +L+ L+ + N ++P S
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 218 LKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPV----NQLQGSLPSDLGFTLPNLERL 273
L + + N + + L + N + + F L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA-FQGIKLHEL 209
Query: 274 NLGENQFTGPIPA-SISNASHLMRLTIPINGFSGKVP-------SFGNLHKLQWVSISMN 325
L N + I + N + L + + F + L + +
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Query: 326 HLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGN 385
+ + D ++F L N S + L G++I + + L + QL
Sbjct: 270 YTNDFSDDIVKFHC-LANVSAMSLAGVSIKYLED------VPKHFKWQSLSIIRCQL-KQ 321
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK--FLGEIPSSIGNLTL 443
P+ +L L+ L L N+ + I L L L L N F G S
Sbjct: 322 FPTL--DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 444 LITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQ 502
L L N + ++ + L L ++ L L L YLD+S
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL-YLDISYTN 435
Query: 503 LNGTLPSNFGILKNLGVLDVSENKLSGEIP-NSLGSCVRLEQLGMNGNFFQGNIPSSFSS 561
F L +L L ++ N N + L L ++ + F +
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 562 LRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP-IKGVFSNSSAVSLDGN 620
L ++ L++S NNL ++ L L+ SFN E ++ + + +L N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-29
Identities = 50/259 (19%), Positives = 87/259 (33%), Gaps = 14/259 (5%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426
++ + + + + N L N L+ L L + + LH L L L
Sbjct: 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88
Query: 427 GNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTG-TIPTE 485
GN P S LT L L + L +G+ L L +++N + +P
Sbjct: 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148
Query: 486 VIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLG----VLDVSENKLSGEIPNSLGSCVRL 541
L++L ++DLS N + ++ L+ LD+S N + I + ++L
Sbjct: 149 FSNLTNLV-HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKL 206
Query: 542 EQLGMNGNFFQGNIPS-SFSSLRGIENLDLSRNNLSGRI------PKYFENFLFLQNLNL 594
+L + GNF NI +L G+ L P E +
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 595 SFNHFEGEVPIKGVFSNSS 613
+ F +
Sbjct: 267 RLTYTNDFSDDIVKFHCLA 285
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 3e-23
Identities = 59/358 (16%), Positives = 105/358 (29%), Gaps = 65/358 (18%)
Query: 76 RVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTF 135
+ L L+ + + L S + +++ F+ Q L +
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319
Query: 136 GGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNL- 194
++ L+SL L N+ + K +L L L + N LS S+ +L
Sbjct: 320 KQFPTLDLP---FLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374
Query: 195 -SSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFS-IYNLSSLNYFEFPV 252
+SL L S N + + L+ ++ + F + L FS +L L Y +
Sbjct: 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Query: 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFG 312
+ L +L L + N F +++ F
Sbjct: 434 TNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNV----------------------FA 470
Query: 313 NLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRL 372
N L ++ +S L I+ F + RL
Sbjct: 471 NTTNLTFLDLSKCQLE----------------------QISWGVFDTL---------HRL 499
Query: 373 RILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430
++L + +N L S L +L L N+ L L N
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 19/99 (19%), Positives = 32/99 (32%)
Query: 86 LLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISH 145
+LS N + L LDL L RLQ L + +N + +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Query: 146 CVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLS 184
+L +L FN + L + N+++
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 4e-52
Identities = 97/513 (18%), Positives = 172/513 (33%), Gaps = 26/513 (5%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELV 160
+ LDL N R+ LQ L L +L +L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF-VGQIPKTLSQLK 219
LS L+ L NL+ G+L +L+ L+ + N ++P+ S L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 220 RMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPV----NQLQGSLPSDLGFTLPNLERLNL 275
+ + NK+ + L + + N + + F L +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA-FKEIRLHKLTL 207
Query: 276 GENQFTGPIPA-SISNASHLMRLTIPINGFSG----KVPSFGNLHKLQWVSISMNHLGNG 330
N + + I + L + + F + L L ++I L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 331 EKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL 390
+ + ++ + + + + + L ++ Q
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL----- 322
Query: 391 RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK--FLGEIPSSIGNLTLLITLS 448
L +L+RL N+ DL L+ L L N F G S T L L
Sbjct: 323 -KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 449 FDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIYLDLSQNQLNGTL 507
N + ++ S+ + L L ++NL V + L +L IYLD+S
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAF 437
Query: 508 PSNFGILKNLGVLDVSENKLSGEI-PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIE 566
F L +L VL ++ N P+ L L ++ + P++F+SL ++
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 567 NLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHF 599
L+++ N L F+ LQ + L N +
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-24
Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 14/246 (5%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426
NL + L + N L + L+ L L + G+ L L L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 427 GNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT-GTIPTE 485
GN + L+ L L + L +G + L L +++N + +P
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 486 VIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGV----LDVSENKLSGEIPNSLGSCVRL 541
L++L +LDLS N++ ++ +L + + LD+S N ++ I +RL
Sbjct: 145 FSNLTNLE-HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202
Query: 542 EQLGMNGNFFQGNIPS-SFSSLRGIENLDL------SRNNLSGRIPKYFENFLFLQNLNL 594
+L + NF N+ L G+E L + NL E L
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 595 SFNHFE 600
+ +
Sbjct: 263 RLAYLD 268
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 4e-48
Identities = 106/515 (20%), Positives = 180/515 (34%), Gaps = 70/515 (13%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
L+ L + + + Q L ++ L D G + D + + NL +
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRL--GIKSIDGVEYLNNLTQINF 75
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
N+L P L +L+KL + ++ N ++ P NL++L L+ NQ P
Sbjct: 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 129
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLN 274
L L + + N +S S L+SL F NQ+ P L LERL+
Sbjct: 130 LKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFG-NQVTDLKPLA---NLTTLERLD 183
Query: 275 LGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDD 334
+ N+ + ++ ++L L N S + G L L +S++ N L
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQL------- 233
Query: 335 LEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLV 394
+I + T L L + NNQ+ P L L
Sbjct: 234 -----------------KDIGTLASL---------TNLTDLDLANNQISNLAP--LSGLT 265
Query: 395 NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNML 454
L L L NQ + P + L L L L N+ E S I NL L L+ N +
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNI 321
Query: 455 EGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGIL 514
P + L L NN ++ + + L++++ +L NQ++ + L
Sbjct: 322 SDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNIN-WLSAGHNQISD--LTPLANL 374
Query: 515 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNN 574
+ L +++ + N + + P++ S D++ N
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNL 432
Query: 575 LSGRIPKYFENFLFLQNLNLSFNHFEGEV--PIKG 607
S + F + F G V P+K
Sbjct: 433 PSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 466
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 3e-43
Identities = 101/464 (21%), Positives = 175/464 (37%), Gaps = 42/464 (9%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESL 152
+L + L ++ + YL L + NN P + + L +
Sbjct: 40 VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDI 95
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
+ N++ P L +L+ L L + N ++ P NL++L L S+N
Sbjct: 96 LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--I 149
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLER 272
LS L ++ + FG N+++ P + NL++L + N++ S L L NLE
Sbjct: 150 SALSGLTSLQQLSFG-NQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLA-KLTNLES 203
Query: 273 LNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEK 332
L NQ + P + ++L L++ N + + +L L + ++ N +
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQI----- 255
Query: 333 DDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRN 392
+L ++ L L L + N + + L T L L + NQL S + N
Sbjct: 256 SNLAPLSGLTK---LTELKLGANQISNI--SPLAGL-TALTNLELNENQLED--ISPISN 307
Query: 393 LVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452
L NL L L N + P + L KLQRL NK SS+ NLT + LS N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHN 363
Query: 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFG 512
+ P L + LGL++ T +S + +++ P+
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL---IAPATIS 418
Query: 513 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIP 556
+ D++ N S + + +G F G +
Sbjct: 419 DGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 3e-41
Identities = 109/490 (22%), Positives = 169/490 (34%), Gaps = 68/490 (13%)
Query: 142 NISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLS 201
+ LG + V L ++ TL + L++L ++
Sbjct: 19 TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQIN 74
Query: 202 ASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPS 261
S NQ P L L ++ I N+++ P + NL++L NQ+ P
Sbjct: 75 FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDPL 130
Query: 262 DLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVS 321
L NL RL L N + +S + L +L+ + NL L+ +
Sbjct: 131 K---NLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLD 183
Query: 322 ISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQ 381
IS N + D+ + L N LE L N + +G L T L L + NQ
Sbjct: 184 ISSNKV-----SDISVLAKLTN---LESLIATNNQISDI--TPLGIL-TNLDELSLNGNQ 232
Query: 382 LFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNL 441
L L +L NL L L NQ + P + L KL L L N+ P + L
Sbjct: 233 L--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286
Query: 442 TLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQN 501
T L L ++N LE P + +NL L L NN++ P L+ L L N
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQ-RLFFYNN 341
Query: 502 QLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSS 561
+++ S+ L N+ L N++S P ++
Sbjct: 342 KVSD--VSSLANLTNINWLSAGHNQISDLTP--------------------------LAN 373
Query: 562 LRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGND 621
L I L L+ + Y N + N N + + S D
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKAN---VSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430
Query: 622 NLCGGISELH 631
NL +E+
Sbjct: 431 NLPSYTNEVS 440
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 11/148 (7%)
Query: 460 SSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGV 519
+ + L N+T T+ L ++ L + + L NL
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVT-TLQADRLGIKS--IDGVEYLNNLTQ 72
Query: 520 LDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRI 579
++ S N+L+ P L + +L + MN N + ++L + L L N ++
Sbjct: 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDID 128
Query: 580 PKYFENFLFLQNLNLSFNHFEGEVPIKG 607
P +N L L LS N + G
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISALSG 154
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 8e-45
Identities = 106/518 (20%), Positives = 190/518 (36%), Gaps = 34/518 (6%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELV 160
V D ++ SF IP + ++ L L N ++ C NL+ L L + +
Sbjct: 7 SGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG-QIPKTLSQLK 219
SL L L + N+LS S FG LSSL+ L+ N + + L
Sbjct: 64 TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123
Query: 220 RMRFIGFGVNKLSGEIP-FSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGEN 278
++ + G + EI L+SLN E L+ L ++ ++ L L +
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLS 182
Query: 279 QFTGPIPASISNASHLMRLTIPING----FSGKVPSFGNLHKLQWVSISMNHLGNGEKDD 334
+ + S + L + +P ++ ++ + L + ++
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242
Query: 335 L-EFVNSLVNASRLELLGININNFGGMLPEAVGNLS-------TRLRILRVGNNQLFGNI 386
L + + ++ S +E +N G P +S +R L + LF ++
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302
Query: 387 PSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEI---PSSIGNLTL 443
+ L ++R+ +E ++ L L+ L L N + E + G
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362
Query: 444 LITLSFDKNMLE--GSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQN 501
L TL +N L L +NL L +S N +P + +L+LS
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSST 420
Query: 502 QLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSS 561
+ + + I + L VLDVS N L L L++L ++ N + +S
Sbjct: 421 GIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLKTLPDASL-- 471
Query: 562 LRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHF 599
+ + +SRN L F+ LQ + L N +
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-41
Identities = 91/490 (18%), Positives = 178/490 (36%), Gaps = 35/490 (7%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
+ + L+VL LK++ L L+ L L +N +L+ L L
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
Query: 155 GFNELVG-KVPRKLGSLSKLRTLAVHYNNLSGQIP-SSFGNLSSLEVLSASANQFVGQIP 212
N V +L+ L+TL + +I F L+SL L A
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLER 272
++L ++ + + +++ + + LSS+ Y E L
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSP 224
Query: 273 LNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEK 332
+ + + S + L+R + L ++++ ++N LG+
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYIL-------------ELSEVEFDDCTLNGLGDFNP 271
Query: 333 DDLEFVNSLVNASRLELLGINI-NNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-L 390
+ + V+ L + + ++I + V +L +++ + V N+++F +P
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFS 330
Query: 391 RNLVNLERLLLEGNQFTGRI---PGSIGDLHKLQRLGLQGNKF--LGEIPSSIGNLTLLI 445
++L +LE L L N G LQ L L N + + + L L
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG 505
+L +N +P S + + L LS+ + + T + +L LD+S N L+
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLE-VLDVSNNNLD- 444
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565
+ L L L +S NKL +P++ L + ++ N + F L +
Sbjct: 445 SFSLF---LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499
Query: 566 ENLDLSRNNL 575
+ + L N
Sbjct: 500 QKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-30
Identities = 71/442 (16%), Positives = 144/442 (32%), Gaps = 50/442 (11%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQE-IGYLFRLQFLWLDNNTFGGQIPDNISHCVN 148
++ NL+ L+ L + N +EI + L L L + + ++ +
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173
Query: 149 LESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208
+ L L +E + LS +R L + NL+ S + A +
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 209 GQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLP 268
++ ++L ++ ++++ + + +F ++ +
Sbjct: 234 VLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESD-VVSELGKVETV 286
Query: 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG-KVPSFGNLHKLQWVSISMNHL 327
+ RL++ + + S + R+T+ + +L L+++ +S N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
Query: 328 GNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQL--FGN 385
+ + + L+ L + N L
Sbjct: 347 VEEYLKNSACKGAWPS----------------------------LQTLVLSQNHLRSMQK 378
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
L L NL L + N F +P S K++ L L + + + I L
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQTLE 434
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG 505
L N L+ S L L L +S N L T+P + L + +S+NQL
Sbjct: 435 VLDVSNNNLD-SFSLFL---PRLQELYISRNKLK-TLPDASL-FPVLL-VMKISRNQLKS 487
Query: 506 TLPSNFGILKNLGVLDVSENKL 527
F L +L + + N
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 7e-26
Identities = 72/454 (15%), Positives = 143/454 (31%), Gaps = 78/454 (17%)
Query: 169 SLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGV 228
S + + IPS G ++++ L S N+ L ++ +
Sbjct: 3 SCDASGVCDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59
Query: 229 NKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASI 288
++++ + Y+L SL + + N L SL S L +L+ LNL N +
Sbjct: 60 SRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ------- 111
Query: 289 SNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLE 348
T+ + F NL LQ + I
Sbjct: 112 ---------TLGVTSL------FPNLTNLQTLRIGNVET--------------------- 135
Query: 349 LLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTG 408
I +F G+ T L L + L L+++ ++ L L ++
Sbjct: 136 FSEIRRIDFAGL---------TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186
Query: 409 RIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEG----------SI 458
+ L ++ L L+ S + + + +
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246
Query: 459 PSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSI-------YLDLSQNQLNGTLPSNF 511
+ + + + N L P+E +S L L + Q L L + +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Query: 512 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI---PSSFSSLRGIENL 568
+L+ + + V +K+ + LE L ++ N + + ++ L
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366
Query: 569 DLSRNNLS--GRIPKYFENFLFLQNLNLSFNHFE 600
LS+N+L + + L +L++S N F
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 2e-19
Identities = 48/254 (18%), Positives = 83/254 (32%), Gaps = 12/254 (4%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
IPSGL ++ L L N+ T G + LQ L L+ ++ + +L L
Sbjct: 20 IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTG-TIPTEVIGLSSLSIYLDLSQNQLN 504
L N L S G +L L L N + + L++L L + +
Sbjct: 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ-TLRIGNVETF 136
Query: 505 GTLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLR 563
+ F L +L L++ L SL S + L ++ + + L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196
Query: 564 GIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNL 623
+ L+L NL+ + V ++ S L
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR-------GSVLTDESFNELLKLLRY 249
Query: 624 CGGISELHLSTCSI 637
+SE+ C++
Sbjct: 250 ILELSEVEFDDCTL 263
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 43/225 (19%), Positives = 76/225 (33%), Gaps = 16/225 (7%)
Query: 80 LLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQI 139
L +P L LS L ++ + ++N+ +L L+FL L N +
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 140 PDN---ISHCVNLESLRLGFNEL--VGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNL 194
N +L++L L N L + K L +L L +L + N +P S
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409
Query: 195 SSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQ 254
+ L+ S+ L+ + N L + L L N+
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSN---NNLD-SFSLFLPRLQELYISR---NK 462
Query: 255 LQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTI 299
L+ +LP P L + + NQ + L ++ +
Sbjct: 463 LK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 6/140 (4%)
Query: 473 LSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532
+ + T +IP+ GL++ LDLS N++ + NL VL + ++++
Sbjct: 12 GRSRSFT-SIPS---GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67
Query: 533 NSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSG-RIPKYFENFLFLQN 591
++ S LE L ++ N S F L ++ L+L N + F N LQ
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 592 LNLSFNHFEGEVPIKGVFSN 611
L + E+ + F+
Sbjct: 128 LRIGNVETFSEIR-RIDFAG 146
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
D ++PS + + LD+S NK++ L +C L+ L + +
Sbjct: 10 CDGRSRSFT-SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 556 PSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSN 611
+F SL +E+LDLS N+LS +F L+ LNL N ++ + + +F N
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPN 121
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
+ +R L+L + R + I L+ L + NN + L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNN----NLDSFSLFLPRL 453
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208
+ L + N+L +P L + + N L F L+SL+ + N +
Sbjct: 454 QELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 1e-44
Identities = 111/542 (20%), Positives = 200/542 (36%), Gaps = 45/542 (8%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLG 155
L+ L L N R +L +LQ L L + I + NL L LG
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 156 FNELVGKVPRKLGSLSKLRTLAVHYNNLSGQI--PSSFGNLSSLEVLSASANQFVG-QIP 212
+++ P L L L +++ LS + F NL +L L S NQ +
Sbjct: 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLS--SLNYFEFPVNQLQGSLPSDLG-----F 265
+ +L ++ I F N++ + L +L++F N L + D G F
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 266 TLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMN 325
LE L++ N +T I + SNA + S H + +
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAF-----------SLILAHHIMGAGFGFH 250
Query: 326 HLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGN 385
++ + +++ + S + L ++ + L L++L + N++
Sbjct: 251 NIKDPDQNTFAGLAR----SSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKI 305
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
L NL+ L L N + L K+ + LQ N + L L
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG 505
TL N L +++ ++ + LS N L T+P + + + LS+N+L
Sbjct: 366 TLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TLPKINLTAN----LIHLSENRLEN 415
Query: 506 TLPSNFGI-LKNLGVLDVSENKLSGEIPNSL-GSCVRLEQLGMNGNFFQGNIPSS----- 558
F + + +L +L +++N+ S + LEQL + N Q +
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475
Query: 559 FSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLD 618
F L ++ L L+ N L+ P F + L+ L+L+ N + + +N + +
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDIS 534
Query: 619 GN 620
N
Sbjct: 535 RN 536
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-32
Identities = 72/391 (18%), Positives = 135/391 (34%), Gaps = 35/391 (8%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP--SFGNLHKLQWVSISM 324
L ERL L N +S L L + + +F NL L+ + +
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82
Query: 325 NHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFG 384
+ + D + + L L L +++ + NL L L + NQ+
Sbjct: 83 SKIYFLHPDAFQGLFHL---FELRLYFCGLSDAV-LKDGYFRNL-KALTRLDLSKNQIRS 137
Query: 385 -NIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLH--KLQRLGLQGNKFLGEIPSSI--- 438
+ L +L+ + NQ + L L L N +
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197
Query: 439 ---------------GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIP 483
GN + N + S SL +++ G +N+
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 484 TEVIGLSSLSI-YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 542
GL+ S+ +LDLS + F LK+L VL+++ NK++ + L+
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 543 QLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGE 602
L ++ N S+F L + +DL +N+++ + F+ LQ L+L N
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN----- 372
Query: 603 VPIKGVFSNSSAVSLDGNDNLCGGISELHLS 633
+ + S + + N + +++L+
Sbjct: 373 -ALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-30
Identities = 108/602 (17%), Positives = 196/602 (32%), Gaps = 110/602 (18%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
NL L LDL N R+ + +L+S+
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYL-----------------------HPSFGKLNSLKSIDF 155
Query: 155 GFNELVGKVPRKLGSLS--KLRTLAVHYNNLSGQIPSSFGNLS------SLEVLSASANQ 206
N++ +L L L ++ N+L ++ +G LE+L S N
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDL-GF 265
+ I S N +S FS+ + F + ++ + G
Sbjct: 216 WTVDITGNFS------------NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263
Query: 266 TLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG-KVPSFGNLHKLQWVSISM 324
++ L+L L L + N + +F L LQ +++S
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 325 NHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFG 384
N LG + +NF G+ ++ + + N +
Sbjct: 324 NLLGE----------------------LYSSNFYGL---------PKVAYIDLQKNHIAI 352
Query: 385 NIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTL- 443
+ L L+ L L N T +I + + + L GNK ++ + L
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL-----VTLPKINLT 402
Query: 444 LITLSFDKNMLEG-SIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQ 502
+ +N LE I L + +L +L L+ N + + + L L +N
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 503 LNGTLPSN-----FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPS 557
L + F L +L VL ++ N L+ P L L +N N +
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522
Query: 558 SFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKG---------- 607
+ +E LD+SRN L P F + L L+++ N F E +
Sbjct: 523 DLPAN--LEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFINWLNHTNV 577
Query: 608 -VFSNSSAVSLDGNDNLCG-GISELHLSTCSIKESKQSRSRSLKLIIPIVTGILLVTGMS 665
+ + + D+ G + L C +E +S SL ++ + + L+T ++
Sbjct: 578 TIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILT 637
Query: 666 CL 667
Sbjct: 638 VT 639
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 8e-27
Identities = 86/485 (17%), Positives = 156/485 (32%), Gaps = 53/485 (10%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLF--RLQFLWLDNNTFGGQIPDNISHCV 147
L P G L+ L+ +D +N E+ L L F L N+ ++ + C+
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 148 N------LESLRLGFNELVGKVPR------------KLGSLSKLRTLAVHYNNLSGQIPS 189
N LE L + N + L + ++N+ +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 190 SFGNL--SSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNY 247
+F L SS+ L S + LK ++ + NK++ + Y L +L
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 248 FEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGK 307
N L L S + LP + ++L +N + L L + N +
Sbjct: 319 LNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-- 375
Query: 308 VPSFGNLHKLQWVSISMNHLGNGEKDD---------------LEFVNSLVNASRLELLGI 352
+ + + + +S N L K + L+ + L+ L++L +
Sbjct: 376 --TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 353 NINNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-----RNLVNLERLLLEGNQFT 407
N N F + + + L L +G N L + L L +L+ L L N
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 408 GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQN 467
PG L L+ L L N+ L + + L L +N L P +
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNR-LTVLSHND-LPANLEILDISRNQLLAPNPDVF---VS 548
Query: 468 LILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKL 527
L +L +++N ++ L+ + + +S
Sbjct: 549 LSVLDITHNKFICECELSTF-INWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607
Query: 528 SGEIP 532
E
Sbjct: 608 DEEEV 612
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 17/213 (7%)
Query: 82 LPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGG-QIP 140
L +L L+ + I + + + L N +P+ + L N I
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDIL 419
Query: 141 DNISHCVNLESLRLGFNELVGKVPRKL-GSLSKLRTLAVHYNNLSGQIPSS-----FGNL 194
+ +L+ L L N + L L + N L + F L
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479
Query: 195 SSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQ 254
S L+VL + N P S L +R + N+L+ + + ++L + NQ
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQ 537
Query: 255 LQGSLPSDLGFTLPNLERLNLGENQFTGPIPAS 287
L P +L L++ N+F S
Sbjct: 538 LLAPNPD----VFVSLSVLDITHNKFICECELS 566
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 6e-41
Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 27/326 (8%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
E L + P +S R N + Q + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQ---WQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67
Query: 327 LGNGEKDDLEFVNSLVNASRLELLGINI-NNFGGMLPEAVGNLSTRLRILRVGNNQLFGN 385
L + L +A++ + + + + P+ L + L+ + + L
Sbjct: 68 LK-------ATADLLEDATQPGRVALELRSVPLPQFPDQAFRL-SHLQHMTIDAAGL-ME 118
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTL-- 443
+P ++ LE L L N +P SI L++L+ L ++ L E+P + +
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 444 -------LITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYL 496
L +L + + S+P+S+ QNL L + N+ L+ + + L L L
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-EEL 234
Query: 497 DLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIP 556
DL P FG L L + + +P + +LE+L + G +P
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 557 SSFSSLRGIENLDLSRNNLSGRIPKY 582
S + L + + +L ++ ++
Sbjct: 295 SLIAQLPANCIILVP-PHLQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 7e-38
Identities = 67/349 (19%), Positives = 112/349 (32%), Gaps = 33/349 (9%)
Query: 190 SFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFE 249
+ S E L + + LSQ +R + N ++
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIET 62
Query: 250 FPVNQLQGSLPSDLGF-TLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKV 308
L+ + L T P L L P SHL +TI G
Sbjct: 63 RTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMELP 120
Query: 309 PSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNL 368
+ L+ ++++ N L S+ + +RL L I LPE + +
Sbjct: 121 DTMQQFAGLETLTLARNPLR-------ALPASIASLNRLRELSIRACPELTELPEPLAST 173
Query: 369 STRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428
+ LVNL+ L LE +P SI +L L+ L ++ +
Sbjct: 174 D----------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216
Query: 429 KFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIG 488
L + +I +L L L + P G L L L + + T+P ++
Sbjct: 217 P-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275
Query: 489 LSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 537
L+ L LDL LPS L ++ V + + + +
Sbjct: 276 LTQLE-KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 3e-36
Identities = 50/279 (17%), Positives = 91/279 (32%), Gaps = 21/279 (7%)
Query: 336 EFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNL-- 393
+ + L R N + S +I L L +
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTGRAL-KATADLLEDATQ 80
Query: 394 VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNM 453
L L + P L LQ + + L E+P ++ L TL+ +N
Sbjct: 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP 138
Query: 454 LEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSI--------YLDLSQNQLNG 505
L ++P+S+ L L + +P + + L L +
Sbjct: 139 LR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR- 196
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565
+LP++ L+NL L + + LS + ++ +LE+L + G N P F +
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 566 ENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604
+ L L + +P L+ L+L +P
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 7e-36
Identities = 60/393 (15%), Positives = 114/393 (29%), Gaps = 82/393 (20%)
Query: 89 GSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVN 148
GS H + S L + ++ + R + ++ N
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57
Query: 149 LESLRLGFNELVGKVPRKLGSLS--KLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
+ L L + L + L Q P LS L+ ++ A
Sbjct: 58 PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFT 266
+ E+P ++ + L N L+ +LP+ + +
Sbjct: 116 LM-------------------------ELPDTMQQFAGLETLTLARNPLR-ALPASIA-S 148
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
L L L++ +P +++ L LQ + +
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDAS--------------GEHQGLVNLQSLRLEWTG 194
Query: 327 LGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNI 386
+ + LP ++ NL L+ L++ N+ L +
Sbjct: 195 IRS-------------------------------LPASIANL-QNLKSLKIRNSPLSA-L 221
Query: 387 PSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLIT 446
+ +L LE L L G P G L+RL L+ L +P I LT L
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281
Query: 447 LSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT 479
L + +PS + + ++ + +
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 3e-19
Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 2/151 (1%)
Query: 82 LPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD 141
LP L S L L+ L L+ R +P I L L+ L + N+ +
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGP 223
Query: 142 NISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLS 201
I H LE L L + P G + L+ L + + +P L+ LE L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 202 ASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232
+ ++P ++QL I + +
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 8e-15
Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 34/200 (17%)
Query: 431 LGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQ--------------------NLIL 470
+G + + L F + L + Q N +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60
Query: 471 LGLSNNNLTGTIPTEVIGLSSLS-IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSG 529
+ L + + + L+L L P L +L + + L
Sbjct: 61 ETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM- 117
Query: 530 EIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLF- 588
E+P+++ LE L + N + +P+S +SL + L + +P+ +
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 589 --------LQNLNLSFNHFE 600
LQ+L L +
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR 196
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
+L P I +L L LDL+ + P G L+ L L + + +P +I L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN---NLSGQIPSSFG 192
E L L + ++P + L + V + L P +
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 3e-38
Identities = 75/363 (20%), Positives = 135/363 (37%), Gaps = 33/363 (9%)
Query: 214 TLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERL 273
+ L ++ + L S+ ++ + + L NLE L
Sbjct: 17 PDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVAS--IQGIEY-LTNLEYL 71
Query: 274 NLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKD 333
NL NQ T P +SN L L I N + + + NL L+ + ++ +++
Sbjct: 72 NLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNI-----S 123
Query: 334 DLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNL 393
D+ + +L + L + N+ + N+ T L L V +++ + + NL
Sbjct: 124 DISPLANLTK---MYSLNLGANHNLS-DLSPLSNM-TGLNYLTVTESKV--KDVTPIANL 176
Query: 394 VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNM 453
+L L L NQ P + L L N+ P + N+T L +L N
Sbjct: 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232
Query: 454 LEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGI 513
+ P L L L + N ++ V L+ L L++ NQ++ S
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLK-MLNVGSNQISD--ISVLNN 285
Query: 514 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573
L L L ++ N+L E +G L L ++ N P +SL +++ D +
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343
Query: 574 NLS 576
+
Sbjct: 344 VIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 9e-38
Identities = 72/341 (21%), Positives = 133/341 (39%), Gaps = 30/341 (8%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
L R L + T + + +L + + + L L++++++ N
Sbjct: 21 LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGNQ 77
Query: 327 LGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNI 386
+ D+ +++LV + L + I + A+ NL T LR L + + +
Sbjct: 78 I-----TDISPLSNLVKLTNLYIGTNKITD-----ISALQNL-TNLRELYLNEDNISD-- 124
Query: 387 PSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLIT 446
S L NL + L L N + ++ L L + +K + ++ I NLT L +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYS 181
Query: 447 LSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGT 506
LS + N +E P L +L N +T P V ++ L+ L + N++
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN-SLKIGNNKITDL 236
Query: 507 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIE 566
S L L L++ N++S N++ +L+ L + N S ++L +
Sbjct: 237 --SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290
Query: 567 NLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKG 607
+L L+ N L + L L LS NH P+
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS 331
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-36
Identities = 76/385 (19%), Positives = 145/385 (37%), Gaps = 56/385 (14%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
+L+ L+ S + + L + L + I + NLE L L
Sbjct: 18 DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNL 73
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
N++ P L +L KL L + N ++ S+ NL++L L + + P
Sbjct: 74 NGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP-- 127
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLN 274
L+ L +M + G N ++ + N++ LNY ++++ P L +L L+
Sbjct: 128 LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIA---NLTDLYSLS 183
Query: 275 LGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDD 334
L NQ P +++ + L T +N + + N+ +L + I N +
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITD-ITPVANMTRLNSLKIGNNKI------- 233
Query: 335 LEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLV 394
+++ + ++L L +G NQ+ + + +++L
Sbjct: 234 -----------------TDLSPLANL---------SQLTWLEIGTNQI--SDINAVKDLT 265
Query: 395 NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNML 454
L+ L + NQ + + +L +L L L N+ E IG LT L TL +N +
Sbjct: 266 KLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Query: 455 EGSIPSSLGKCQNLILLGLSNNNLT 479
P L + +N +
Sbjct: 324 TDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 6e-36
Identities = 86/362 (23%), Positives = 141/362 (38%), Gaps = 33/362 (9%)
Query: 142 NISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLS 201
+ L + V L + L V ++ L++LE L+
Sbjct: 17 PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72
Query: 202 ASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPS 261
+ NQ P LS L ++ + G NK++ NL++L + + P
Sbjct: 73 LNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ--NLTNLRELYLNEDNISDISPL 128
Query: 262 DLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVS 321
L + LNLG N + +SN + L LT+ + V NL L +S
Sbjct: 129 A---NLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK-DVTPIANLTDLYSLS 183
Query: 322 ISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQ 381
++ N + D+ + SL + L +N + V N+ TRL L++GNN+
Sbjct: 184 LNYNQIE-----DISPLASLTS---LHYFTAYVNQITDI--TPVANM-TRLNSLKIGNNK 232
Query: 382 LFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNL 441
+ S L NL L L + NQ + ++ DL KL+ L + N+ S + NL
Sbjct: 233 I--TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI--SDISVLNNL 286
Query: 442 TLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQN 501
+ L +L + N L +G NL L LS N++T P LS + D +
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMD-SADFANQ 343
Query: 502 QL 503
+
Sbjct: 344 VI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 3e-32
Identities = 68/337 (20%), Positives = 125/337 (37%), Gaps = 52/337 (15%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESL 152
I L+ L L+L N + P + L +L L++ N + + NL L
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLREL 115
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
L + + P L +L+K+ +L + N+ S N++ L L+ + ++ P
Sbjct: 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP 172
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLER 272
++ L + + N++ P + +L +L
Sbjct: 173 --IANLTDLYSLSLNYNQIEDISPLA---------------------------SLTSLHY 203
Query: 273 LNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEK 332
NQ T P ++N + L L I N + + NL +L W+ I N + +
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISD--- 257
Query: 333 DDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRN 392
+N++ + ++L++L + N + NL ++L L + NNQL +
Sbjct: 258 -----INAVKDLTKLKMLNVGSNQISD--ISVLNNL-SQLNSLFLNNNQLGNEDMEVIGG 309
Query: 393 LVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK 429
L NL L L N T P + L K+
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 4e-20
Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 38/238 (15%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
S + N++ L L + + ++ P I L L L L+ N P ++ +L
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG 209
N++ P + ++++L +L + N ++ S NLS L L NQ
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI-- 255
Query: 210 QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269
+ L +++ + G N++S + NLS LN NQL +G L N
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIG-GLTN 312
Query: 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHL 327
L L L +N T + +L K+ + +
Sbjct: 313 LTTLFLSQNHITD-------------------------IRPLASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 7e-18
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 17/191 (8%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLE 150
I NL+ L L L N + P + L L + N QI D +++ L
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN----QITDITPVANMTRLN 224
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
SL++G N++ P L +LS+L L + N +S ++ +L+ L++L+ +NQ
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD- 279
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
L+ L ++ + N+L E I L++L N + P +L +
Sbjct: 280 -ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA---SLSKM 335
Query: 271 ERLNLGENQFT 281
+ +
Sbjct: 336 DSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 10/138 (7%)
Query: 472 GLSNNNLTGTIPTEVIGLSSLS--IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSG 529
G + ++ + L+ I L + + L+++ L V+ K++
Sbjct: 1 GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA- 57
Query: 530 EIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFL 589
I + LE L +NGN P S+L + NL + N ++ +N L
Sbjct: 58 SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNL 112
Query: 590 QNLNLSFNHFEGEVPIKG 607
+ L L+ ++ P+
Sbjct: 113 RELYLNEDNISDISPLAN 130
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 1e-37
Identities = 102/514 (19%), Positives = 160/514 (31%), Gaps = 88/514 (17%)
Query: 80 LLLPSLLLQG----SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYL------------- 122
L L + N+ + + P G
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 123 FRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNN 182
+ L L+N +P+ +LESL N L ++P SL L +
Sbjct: 71 RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125
Query: 183 LSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNL 242
LS P LE L S NQ ++P L ++ I N L ++P +L
Sbjct: 126 LSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSL 175
Query: 243 SSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPIN 302
+ NQL+ LP +L LP L + N +P + L + N
Sbjct: 176 EFIAAGN---NQLE-ELP-ELQ-NLPFLTAIYADNNSLKK-LPDLPLS---LESIVAGNN 225
Query: 303 GFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLP 362
++P NL L + N L + + L + + + LP
Sbjct: 226 ILE-ELPELQNLPFLTTIYADNNLLK-------TLPDLPPSLEALNVRDNYLTD----LP 273
Query: 363 EAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQR 422
E +L T L + + L P NL L N+ + L+
Sbjct: 274 ELPQSL-TFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDL---PPSLEE 321
Query: 423 LGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTI 482
L + NK L E+P+ L L N L +P NL L + N L
Sbjct: 322 LNVSNNK-LIELPALPPRLE---RLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EF 372
Query: 483 PTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 542
P + L ++N L + +NL L V N L E P+ S +E
Sbjct: 373 PDIPESVEDL---------RMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES---VE 419
Query: 543 QLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS 576
L MN + + +E+ ++
Sbjct: 420 DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 1e-36
Identities = 102/509 (20%), Positives = 171/509 (33%), Gaps = 83/509 (16%)
Query: 91 LSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLE 150
++P + +FL+ +++ E+P E + + + + P +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
RL + L ++ LS +P + LE L AS N +
Sbjct: 62 VSRLRDC-----------LDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-E 105
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
+P+ LK + + LS P L L NQL+ LP L
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP----LLEYLGVSN---NQLE-KLPELQN--SSFL 155
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNG 330
+ +++ N +P + L + N ++P NL L + N L
Sbjct: 156 KIIDVDNNSLKK-LPDLPPS---LEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSL--- 207
Query: 331 EKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL 390
+ + ++ + NN LPE + NL L + NN L +P
Sbjct: 208 ----KKLPDLPLSLESIVAG----NNILEELPE-LQNL-PFLTTIYADNNLL-KTLPDLP 256
Query: 391 RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450
+LE L + N T +P L L + + NL L+
Sbjct: 257 P---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG----LSELPPNLY---YLNAS 305
Query: 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN 510
N + S+ +L L +SNN L +P L L S N L +P
Sbjct: 306 SNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRLE----RLIASFNHLA-EVPEL 355
Query: 511 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDL 570
+NL L V N L E P+ S +E L MN + +P +L+ L +
Sbjct: 356 ---PQNLKQLHVEYNPLR-EFPDIPES---VEDLRMNSHL--AEVPELPQNLK---QLHV 403
Query: 571 SRNNLSGRIPKYFENFLFLQNLNLSFNHF 599
N L P E+ +++L ++
Sbjct: 404 ETNPLR-EFPDIPES---VEDLRMNSERV 428
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-33
Identities = 93/432 (21%), Positives = 168/432 (38%), Gaps = 70/432 (16%)
Query: 169 SLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGV 228
S + L+ H +NL+ ++P N+ S + +++ P + + M
Sbjct: 9 SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 229 NKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASI 288
L L SLP +LE L N T +P
Sbjct: 68 CLDR--------QAHELELNN---LGLS-SLPELPP----HLESLVASCNSLT-ELPELP 110
Query: 289 SNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLE 348
+ L+ + S L+++ +S N L E + L N+S L+
Sbjct: 111 QSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQL--------EKLPELQNSSFLK 156
Query: 349 LLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTG 408
++ ++ N+ LP+ +L + GNNQL +P L+NL L + + N
Sbjct: 157 IIDVDNNSLK-KLPDLPPSL----EFIAAGNNQL-EELPE-LQNLPFLTAIYADNNSLK- 208
Query: 409 RIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNL 468
++P L+ + N E + NL L T+ D N+L+ ++P +L
Sbjct: 209 KLPDLPL---SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SL 259
Query: 469 ILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLS 528
L + +N LT +P L+ L D+S+N + L + NL L+ S N++
Sbjct: 260 EALNVRDNYLT-DLPELPQSLTFL----DVSENIFS-GLSE---LPPNLYYLNASSNEIR 310
Query: 529 GEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLF 588
+ + S LE+L ++ N +P+ L E L S N+L+ +P+ +N
Sbjct: 311 -SLCDLPPS---LEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQN--- 358
Query: 589 LQNLNLSFNHFE 600
L+ L++ +N
Sbjct: 359 LKQLHVEYNPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-32
Identities = 89/473 (18%), Positives = 156/473 (32%), Gaps = 80/473 (16%)
Query: 140 PDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEV 199
P N+S+ L+ + L ++P + ++ ++ P G + V
Sbjct: 5 PRNVSNT-FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 200 LSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSL 259
+ + +L+ LS +P +L SL N L L
Sbjct: 63 SRLRDC-----LDRQAHELELNN------LGLS-SLPELPPHLESLVASC---NSLT-EL 106
Query: 260 PSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQW 319
P +L +L N + P L L + N K+P N L+
Sbjct: 107 PELPQ-SLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPELQNSSFLKI 157
Query: 320 VSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGN 379
+ + N L + + + + + LPE + NL L + N
Sbjct: 158 IDVDNNSLK-------KLPDLPPSLEFIAAGNNQLEE----LPE-LQNL-PFLTAIYADN 204
Query: 380 NQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIG 439
N L +P ++LE ++ N + +L L + N L +P
Sbjct: 205 NSL-KKLPD---LPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNL-LKTLPDLPP 257
Query: 440 NLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPT-EVIGLSSLSI---- 494
+L L+ N L +P L + + L+ P + SS I
Sbjct: 258 SLE---ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313
Query: 495 -------YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMN 547
L++S N+L LP+ L L S N L+ E+P + L+QL +
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVE 365
Query: 548 GNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600
N + P S+ DL N+ +P+ +N L+ L++ N
Sbjct: 366 YNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQN---LKQLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 9e-19
Identities = 43/280 (15%), Positives = 91/280 (32%), Gaps = 49/280 (17%)
Query: 392 NLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK 451
+ L+ L + T +P ++ +++ P G +
Sbjct: 9 SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 452 NMLEG------------SIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLS 499
+ S+P ++L+ S N+LT +P L SL + + +
Sbjct: 68 CLDRQAHELELNNLGLSSLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLV-DNNN 122
Query: 500 QNQLNGTLPS---------------NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 544
L+ P L ++DV N L ++P+ S LE +
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFI 178
Query: 545 GMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604
N + +P +L + + N+L ++P + L+++ N E E+P
Sbjct: 179 AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE-ELP 231
Query: 605 IKGVFSNSSAVSLDGN-----DNLCGGISELHLSTCSIKE 639
+ + D N +L + L++ + +
Sbjct: 232 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD 271
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 8e-34
Identities = 85/486 (17%), Positives = 156/486 (32%), Gaps = 39/486 (8%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELV 160
+L++ N +I L +L+ L + +N LE L L N+L
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL- 81
Query: 161 GKVPRKLGSLSKLRTLAVHYNNL-SGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLK 219
K+ L+ L + +N + I FGN+S L+ L S ++ L
Sbjct: 82 VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 220 RMR-FIGFGVNKLSGEIPFSIYNLSSL-NYFEFPVNQLQGSLPSDLGFTLPNLERLNLGE 277
+ + G E P + + ++ + FP N+ + T+ NLE N+
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199
Query: 278 NQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEF 337
+S + L +S + +
Sbjct: 200 VLEDNKCSYFLSILA--------------------KLQTNPKLSNLTLNNIETTWNSFIR 239
Query: 338 VNSLVNASRLELLGININNFGGMLPEAVGNLS----TRLRILRVGNNQLFGNIPSGLRNL 393
+ LV + + I+ G L + S L I +V ++
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299
Query: 394 VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNM 453
N+ + + L N + + G+LT L TL N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359
Query: 454 LEGSIPSSLG---KCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQLNGTLPS 509
L+ + + ++L L +S N+++ SL L++S N L T+
Sbjct: 360 LK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL-SLNMSSNILTDTIFR 417
Query: 510 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLD 569
+ VLD+ NK+ IP + L++L + N + F L ++ +
Sbjct: 418 CL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474
Query: 570 LSRNNL 575
L N
Sbjct: 475 LHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-29
Identities = 95/477 (19%), Positives = 157/477 (32%), Gaps = 53/477 (11%)
Query: 138 QIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSL 197
+P ++S L + N + + SLSKLR L + +N + S F L
Sbjct: 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71
Query: 198 EVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257
E L S N+ V LK + +LS N
Sbjct: 72 EYLDLSHNKLVKISCHPTVNLKHL-------------------DLSF--------NAFD- 103
Query: 258 SLPSDLGFT-LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHK 316
+LP F + L+ L L I++ ++ ++ + + G+ L
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH-LNISKVLLVLGETYGEKEDPEGLQD 162
Query: 317 LQWVSISMNHLGNGEKDDL--EFVNSLVNASRLELLGININNFGGMLPEAVGNLST--RL 372
S+ + N E + V ++ N + + +N + L T +L
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222
Query: 373 RILRVGNNQLFGNIPSGLRNLV---NLERLLLEGNQFTGRIPGSIGD-----LHKLQRLG 424
L + N + N + LV + + + G++ D L L
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282
Query: 425 LQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPT 484
+ + F + + +F + K + L SNN LT T+
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342
Query: 485 EVIGLSSLSIYLDLSQNQLNGTLPSNFGI---LKNLGVLDVSENKL-SGEIPNSLGSCVR 540
L+ L L L NQL L + +K+L LD+S+N + E
Sbjct: 343 NCGHLTELE-TLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400
Query: 541 LEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597
L L M+ N I I+ LDL N + IPK LQ LN++ N
Sbjct: 401 LLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 72/437 (16%), Positives = 141/437 (32%), Gaps = 33/437 (7%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDN--ISHCVNLESLRL 154
L LDL +N I L+ L L N F +P + L+ L L
Sbjct: 67 FNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGL 122
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
L + L+ + L V L S +
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHF 180
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLN 274
+ + ++ + + + + + N +L L +
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL---------TLNNIE 231
Query: 275 LGENQFTGPIP-ASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKD 333
N F + + + + + G + L+ ++S++ + + D
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK--ALSIHQVVS---D 286
Query: 334 DLEFVNSLV--NASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLR 391
F S + S + + ++ M+ + + L NN L +
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGT-RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345
Query: 392 NLVNLERLLLEGNQFT--GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLS 448
+L LE L+L+ NQ +I + LQ+L + N + L++L+
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 449 FDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLP 508
N+L +I L + +L L +N + +IP +V+ L +L L+++ NQL
Sbjct: 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ-ELNVASNQLKSVPD 461
Query: 509 SNFGILKNLGVLDVSEN 525
F L +L + + N
Sbjct: 462 GIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 2e-20
Identities = 77/448 (17%), Positives = 138/448 (30%), Gaps = 78/448 (17%)
Query: 171 SKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNK 230
K L + N +S S +LS L +L S N+ + L F
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR--------IQYLDISVF------- 65
Query: 231 LSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISN 290
L Y + N+L + NL+ L+L N F
Sbjct: 66 ---------KFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFD--------- 103
Query: 291 ASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELL 350
+PI FGN+ +L+++ +S HL + +N LL
Sbjct: 104 -------ALPICKE------FGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS-----KVLL 145
Query: 351 GININNFGGMLPEAVGNLST-RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGR 409
+ PE + + +T L I+ N + + ++ + NLE ++ +
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205
Query: 410 IPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLI 469
+ L KLQ N L I ++ + ++ L + +
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY-------------- 251
Query: 470 LLGLSNNNLTGTIPTEVIGLSSLSI----YLDLSQNQLNGTLPSNFGILKNLGVLDVSEN 525
+SN L G + S S+ + + + I N+ + + + +
Sbjct: 252 -FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 526 KLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS--GRIPKYF 583
L + N + + L +E L L N L +I +
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370
Query: 584 ENFLFLQNLNLSFNHFEGEVPIKGVFSN 611
LQ L++S N + KG S
Sbjct: 371 TQMKSLQQLDISQNSVSYDEK-KGDCSW 397
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 7/209 (3%)
Query: 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNT 134
+ ++ + S + S S + + + + R + L NN
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335
Query: 135 FGGQIPDNISHCVNLESLRLGFNEL--VGKVPRKLGSLSKLRTLAVHYNNLSGQIPS-SF 191
+ +N H LE+L L N+L + K+ + L+ L + N++S
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 192 GNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251
SL L+ S+N I + L ++ + NK+ IP + L +L
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452
Query: 252 VNQLQGSLPSDLGFTLPNLERLNLGENQF 280
NQL+ S+P + L +L+++ L N +
Sbjct: 453 SNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 68 VTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGY---LFR 124
+ C + L + LL ++ + G+L+ L L L+ N + + + +
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQMKS 375
Query: 125 LQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNL 183
LQ L + N+ S +L SL + N L + R L +++ L +H N +
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI 433
Query: 184 SGQIPSSFGNLSSLEVLSASANQ 206
IP L +L+ L+ ++NQ
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQ 455
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 5e-33
Identities = 62/486 (12%), Positives = 136/486 (27%), Gaps = 47/486 (9%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
I + + + ++ + L + S ++ L + N LS + + LE
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 199 VLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGS 258
+L+ S+N L L +R + N + + S+ N +
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113
Query: 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQ 318
+ + + L N+ T G ++Q
Sbjct: 114 VSCS---RGQGKKNIYLANNKITMLRDL-----------------------DEGCRSRVQ 147
Query: 319 WVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVG 378
++ + +N + D + F ++ LE L + N + + + +L+ L +
Sbjct: 148 YLDLKLNEI-----DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLS 199
Query: 379 NNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF-LGEIPSS 437
+N+L + ++ + + L N+ I ++ L+ L+GN F G +
Sbjct: 200 SNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257
Query: 438 IGNLTLLITLSFDKN-MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYL 496
+ T++ L G +L +I L L
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317
Query: 497 DLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIP 556
Q L +D + + I L +
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377
Query: 557 SSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVS 616
+ + ++ + E LQ L +E + N++
Sbjct: 378 NGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD 436
Query: 617 LDGNDN 622
D +
Sbjct: 437 WDMYQH 442
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 7e-31
Identities = 75/492 (15%), Positives = 141/492 (28%), Gaps = 77/492 (15%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
++ N + ++ + ++S + + + ++ L L N +++ L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG 209
E L L N L L SLS LRTL ++ N + S+E L A+ N
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113
Query: 210 QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269
K + NK++ S + Y + +N++ ++L +
Sbjct: 114 VSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGN 329
LE LNL N V KL+ + +S N L
Sbjct: 171 LEHLNLQYNFIY-------------------------DVKGQVVFAKLKTLDLSSNKLAF 205
Query: 330 GEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG 389
+ + + + + NN+L I
Sbjct: 206 -------------------------------MGPEFQSA-AGVTWISLRNNKL-VLIEKA 232
Query: 390 LRNLVNLERLLLEGNQF-TGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLS 448
LR NLE L GN F G + ++Q + Q K L T+
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE--ECTVPTLGH 290
Query: 449 FDKNMLEGSIPSSLGKCQNLILLGLS----NNNLTGTIPTEVIGLSSLSIYLDLSQNQLN 504
+ E + L + + T + E + +D + Q
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR-EIDALKEQYR 349
Query: 505 GTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRG 564
+ + L+ + L ++ N + L+ Q + +
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV-GQIELQHATEEQSP 408
Query: 565 IENLDLSRNNLS 576
++ L
Sbjct: 409 LQLLRAIVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-28
Identities = 57/316 (18%), Positives = 105/316 (33%), Gaps = 38/316 (12%)
Query: 361 LPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKL 420
+ E N + R +I +V ++ L + S ++ N++ L L GN + + KL
Sbjct: 2 IHEIKQNGN-RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 421 QRLGLQGNKFLGEIP------------------SSIGNLTLLITLSFDKNMLEGSIPSSL 462
+ L L N L E + + TL N + + S
Sbjct: 61 ELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSR 118
Query: 463 GKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG-TLPSNFGILKNLGVLD 521
G Q + L+NN +T + S + YLDL N+++ L L+
Sbjct: 119 G--QGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 522 VSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPK 581
+ N + ++ + +L+ L ++ N + F S G+ + L N L I K
Sbjct: 176 LQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231
Query: 582 YFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDN---------LCGGISELHL 632
L++ +L N F N ++ C + H
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 633 STCSIKESKQSRSRSL 648
++ + L
Sbjct: 292 GAYCCEDLPAPFADRL 307
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-26
Identities = 58/462 (12%), Positives = 138/462 (29%), Gaps = 34/462 (7%)
Query: 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNT 134
R + L+ +L+ + ++ LDL N ++ +L+ L L +N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 135 FGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNL 194
+ D + L +L L N + ++L + TL NN+S ++ S
Sbjct: 70 L-YETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS--RG 119
Query: 195 SSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSG-EIPFSIYNLSSLNYFEFPVN 253
+ + + N+ R++++ +N++ + +L + N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 254 QLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGN 313
+ + + L+ L+L N+ + +A+ + +++ N +
Sbjct: 180 FIY-DVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF 235
Query: 314 LHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLR 373
L+ + N G D R++ + L T
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDF-----FSKNQRVQTVAKQTVK---KLTGQNEEECTVPT 287
Query: 374 ILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTG----RIPGSIGDLHKLQRLGLQGNK 429
+ G L+ L+R G R+ + + + + +
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347
Query: 430 FLGEIPSSIGNLTLLITLSFDKNMLEGSIP---SSLGKCQNLILLGLSNNNLTGTIPTEV 486
+ I ITL K L+ + + + + + L
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE-- 405
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLS 528
S L + + + + + D+ ++K +
Sbjct: 406 --QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-31
Identities = 77/415 (18%), Positives = 147/415 (35%), Gaps = 32/415 (7%)
Query: 241 NLSSLNYF-EFPVNQLQGSLPSDLGF-TLPNLERLNLGENQFTGPIPASISNASHLMRLT 298
NL F + ++ + TL N + + + A + + + L
Sbjct: 22 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81
Query: 299 IPINGFSG-KVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNF 357
+ +F H +Q + + N + N L +L + N+
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH------VFQNVPLLTVLVLERNDL 135
Query: 358 GGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGD 416
+ N +L L + NN L I + +L+ L L N+ T + +
Sbjct: 136 SSLPRGIFHNT-PKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSL 190
Query: 417 LHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNN 476
+ L + N S++ + L N + + + L +L L +N
Sbjct: 191 IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 242
Query: 477 NLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLG 536
NLT ++ L +DLS N+L + F ++ L L +S N+L +
Sbjct: 243 NLT-DTAW-LLNYPGLV-EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298
Query: 537 SCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSF 596
L+ L ++ N ++ + +ENL L N++ + L+NL LS
Sbjct: 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 354
Query: 597 NHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLI 651
N ++ ++ +F N + ++D D C +L C + K R L+ I
Sbjct: 355 NDWD-CNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 6e-28
Identities = 67/399 (16%), Positives = 136/399 (34%), Gaps = 28/399 (7%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
I N+ + + + + +L+ + + + + + + +E
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78
Query: 199 VLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGS 258
+L+ + Q + ++ + G N + P N+ L N L S
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 137
Query: 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQ 318
LP + P L L++ N + + L L + N + V + L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLF 195
Query: 319 WVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVG 378
++S N L ++L +E L + N+ + G ++ L IL++
Sbjct: 196 HANVSYNLL-----------STLAIPIAVEELDASHNS----INVVRGPVNVELTILKLQ 240
Query: 379 NNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI 438
+N L + L N L + L N+ + + +L+RL + N+ L +
Sbjct: 241 HNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG 297
Query: 439 GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDL 498
+ L L N L + + + L L L +N++ T+ +L L L
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLK-NLTL 352
Query: 499 SQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 537
S N + S + +N+ V + +I L
Sbjct: 353 SHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEH 389
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 69/351 (19%), Positives = 126/351 (35%), Gaps = 29/351 (8%)
Query: 82 LPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIP 140
+ L+ +++ KN++ R ++P + +++ L L++ +I
Sbjct: 34 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EEID 91
Query: 141 DNI-SHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEV 199
++ ++ L +GFN + P ++ L L + N+LS F N L
Sbjct: 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151
Query: 200 LSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSL 259
LS S N T ++ + N+L+ + S + SL + N L +L
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS-TL 207
Query: 260 PSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQW 319
+E L+ N + ++ L L + N + N L
Sbjct: 208 AI-----PIAVEELDASHNSINV-VRGPVN--VELTILKLQHNNLT-DTAWLLNYPGLVE 258
Query: 320 VSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGN 379
V +S N L + V RLE L I+ NN L + L++L + +
Sbjct: 259 VDLSYNELEKIMY------HPFVKMQRLERLYIS-NNRLVALNLYGQPI-PTLKVLDLSH 310
Query: 380 NQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430
N L ++ LE L L+ N + + H L+ L L N +
Sbjct: 311 NHL-LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW 357
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 9e-14
Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 9/214 (4%)
Query: 431 LGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GL 489
I S++ + + D + N ++ N+ + +P ++
Sbjct: 16 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSF 74
Query: 490 SSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGN 549
+ L+L+ Q+ F + L + N + P+ + L L + N
Sbjct: 75 RQVE-LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133
Query: 550 FFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVF 609
F + + L +S NNL F+ LQNL LS N V + +
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL-SLI 191
Query: 610 SNSSAVSLDGND----NLCGGISELHLSTCSIKE 639
+ ++ N + + EL S SI
Sbjct: 192 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 5/134 (3%)
Query: 472 GLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGI-----LKNLGVLDVSENK 526
G N+ P S+L ++ + L N ++ +
Sbjct: 3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62
Query: 527 LSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENF 586
+ L S ++E L +N + +F+ I+ L + N + P F+N
Sbjct: 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122
Query: 587 LFLQNLNLSFNHFE 600
L L L N
Sbjct: 123 PLLTVLVLERNDLS 136
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 9e-06
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 96 GNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLG 155
+ L L + NN + + L+ L L +N + N LE+L L
Sbjct: 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332
Query: 156 FNELVGKVPRKLGSLSKLRTLAVHYNNLS 184
N +V + L + L+ L + +N+
Sbjct: 333 HNSIV-TLK--LSTHHTLKNLTLSHNDWD 358
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-31
Identities = 69/387 (17%), Positives = 134/387 (34%), Gaps = 52/387 (13%)
Query: 241 NLSSLNYF-EFPVNQLQGSLPSDL-GFTLPNLERLNLGENQFTGPIPASISNASHLMRLT 298
NL F + ++ + TL N + + +
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR----------------K 59
Query: 299 IPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFG 358
+P + +++ ++++ + + + A ++ L + N
Sbjct: 60 LPAA-------LLDSFRQVELLNLNDLQIEEIDT------YAFAYAHTIQKLYMGFNAIR 106
Query: 359 GMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGDL 417
+ P N+ L +L + N L ++P G+ N L L + N +
Sbjct: 107 YLPPHVFQNV-PLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164
Query: 418 HKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNN 477
LQ L L N+ L + + + L + N+L S+L + L S+N+
Sbjct: 165 TSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 216
Query: 478 LTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 537
+ + V L+ L L N L T + L +D+S N+L + +
Sbjct: 217 IN-VVRGPV--NVELT-ILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270
Query: 538 CVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597
RLE+L ++ N + + ++ LDLS N+L + + F L+NL L N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328
Query: 598 HFEGEVPIKGVFSNSSAVSLDGNDNLC 624
+ + ++L ND C
Sbjct: 329 SIV-TLKL-STHHTLKNLTLSHNDWDC 353
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 5e-31
Identities = 66/399 (16%), Positives = 136/399 (34%), Gaps = 28/399 (7%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
I N+ + + + + +L+ + + + + + + +E
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 199 VLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGS 258
+L+ + Q + ++ + G N + P N+ L N L S
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 131
Query: 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQ 318
LP + P L L++ N + + L L + N + V + L
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLF 189
Query: 319 WVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVG 378
++S N L ++L +E L + N+ ++ ++ L IL++
Sbjct: 190 HANVSYNLL-----------STLAIPIAVEELDASHNSI-NVVRG---PVNVELTILKLQ 234
Query: 379 NNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI 438
+N L + L N L + L N+ + + +L+RL + N+ L +
Sbjct: 235 HNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG 291
Query: 439 GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDL 498
+ L L N L + + + L L L +N++ T+ +L L L
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLK-NLTL 346
Query: 499 SQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 537
S N + S + +N+ V + +I L
Sbjct: 347 SHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEH 383
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 9/217 (4%)
Query: 428 NKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI 487
I S++ + + D + N ++ N+ + +P ++
Sbjct: 7 QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 65
Query: 488 -GLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
+ L+L+ Q+ F + L + N + P+ + L L +
Sbjct: 66 DSFRQVE-LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124
Query: 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK 606
N F + + L +S NNL F+ LQNL LS N V +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL- 182
Query: 607 GVFSNSSAVSLDGND----NLCGGISELHLSTCSIKE 639
+ + ++ N + + EL S SI
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
+L+ + + L+VLDL +N + + RL+ L+LD+N+ + + H L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLKLSTHH--TL 341
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGN 193
++L L N+ R L + AV + +I +
Sbjct: 342 KNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 383
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-31
Identities = 67/345 (19%), Positives = 130/345 (37%), Gaps = 40/345 (11%)
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKL 317
++P + L+LG+N+ T+ + F + L
Sbjct: 25 AVPEGI---PTETRLLDLGKNRIK----------------TLNQD-------EFASFPHL 58
Query: 318 QWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRV 377
+ + ++ N + E + N L LG+ N + LS L L +
Sbjct: 59 EELELNENIVSAVE------PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTKLDI 111
Query: 378 GNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPS 436
N++ + + ++L NL+ L + N + L+ L++L L+ L IP+
Sbjct: 112 SENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPT 169
Query: 437 -SIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIY 495
++ +L LI L + S + L +L +S+ T+ + +L+
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT-S 228
Query: 496 LDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554
L ++ L +P L L L++S N +S + L +RL+++ + G
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287
Query: 555 IPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHF 599
P +F L + L++S N L+ F + L+ L L N
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-27
Identities = 75/394 (19%), Positives = 131/394 (33%), Gaps = 88/394 (22%)
Query: 138 QIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSL 197
+P+ I L LG N + + S L L ++ N +S P +F NL +L
Sbjct: 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 198 EVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257
L +N+ L + F G LS+L + N++
Sbjct: 83 RTLGLRSNR--------LKLIPLGVFTG----------------LSNLTKLDISENKIV- 117
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKL 317
L + L NL+ L +G+N I FSG L+ L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLV----------------YISHRAFSG-------LNSL 154
Query: 318 QWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRV 377
+ +++ +L + I + L +LR+
Sbjct: 155 EQLTLEKCNLTS----------------------IPTEALSHL---------HGLIVLRL 183
Query: 378 GNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPS- 436
+ + + L L+ L + + + + L L + L +P
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYL 242
Query: 437 SIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIY 495
++ +L L L+ N + S L + L + L L + GL+ L +
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRV- 300
Query: 496 LDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLS 528
L++S NQL TL + F + NL L + N L+
Sbjct: 301 LNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-25
Identities = 61/336 (18%), Positives = 111/336 (33%), Gaps = 39/336 (11%)
Query: 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFN 157
+ R+LDL N + E L+ L L+ N + ++ NL +L L N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN 90
Query: 158 ELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQ 217
L LS L L + N + + F +L +L+ L N V + S
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 218 LKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGE 277
L + + L+ ++ +L L + ++ L L+ L +
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISH 209
Query: 278 NQFTGPIPASISNASHLMRLTIPINGFSGKVPS--FGNLHKLQWVSISMNHLGNGEKDDL 335
+ + + +L L+I + VP +L L+++++S N +
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST------ 262
Query: 336 EFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLV 394
I + + RL+ +++ QL + R L
Sbjct: 263 ----------------IEGSMLHEL---------LRLQEIQLVGGQL-AVVEPYAFRGLN 296
Query: 395 NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430
L L + GNQ T + L+ L L N
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 7e-25
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 9/248 (3%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426
+ T R+L +G N++ + +LE L L N + PG+ +L L+ LGL+
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 427 GNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTE 485
N+ L IP + L+ L L +N + + NL L + +N+L I
Sbjct: 89 SNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146
Query: 486 V-IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 544
GL+SL L L + L L L VL + ++ S RL+ L
Sbjct: 147 AFSGLNSLEQ-LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205
Query: 545 GMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKY-FENFLFLQNLNLSFNHFEGEV 603
++ + + + + +L ++ NL+ +P + ++L+ LNLS+N +
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TI 263
Query: 604 PIKGVFSN 611
+
Sbjct: 264 E-GSMLHE 270
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 48/226 (21%), Positives = 78/226 (34%), Gaps = 21/226 (9%)
Query: 428 NKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV- 486
K +P I T L KN ++ +L L L+ N ++ +
Sbjct: 20 RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAF 76
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
L +L L L N+L F L NL LD+SENK+ + L+ L +
Sbjct: 77 NNLFNLR-TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKY-FENFLFLQNLNLSFNHFEGEVPI 605
N +FS L +E L L + NL+ IP + L L L + +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIR- 192
Query: 606 KGVFSNSSA---VSLDGN-------DNLCGGIS--ELHLSTCSIKE 639
F + + N G++ L ++ C++
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 3e-15
Identities = 39/187 (20%), Positives = 64/187 (34%), Gaps = 5/187 (2%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
+L L+ L++ +N I L L+ L L+ IP SH L LRL
Sbjct: 126 DLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRL 183
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
+ L +L+ L + + + + +L LS +
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLN 274
+ L +RF+ N +S ++ L L + QL + L L LN
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302
Query: 275 LGENQFT 281
+ NQ T
Sbjct: 303 VSGNQLT 309
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-31
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 671 SWRSKSKRESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDH 730
S + S ++ + + RV +L +AT+ F + LIG G FG VYKG+L
Sbjct: 6 SKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL---RD 62
Query: 731 ETLVAVKRS--------------------IRHRNLVKIITSCASVDFQGNDFKALVYEFM 770
VA+KR RH +LV +I C + L+Y++M
Sbjct: 63 GAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE-----RNEMILIYKYM 117
Query: 771 VNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
NG+L+ L+ + + QRL I + A L YLH
Sbjct: 118 ENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH 156
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-30
Identities = 85/463 (18%), Positives = 148/463 (31%), Gaps = 21/463 (4%)
Query: 125 LQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLS 184
+ L L N+ +IS L LRL N + L L V +N L
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 185 GQIPSSFGNLSSLEVLSASANQF-VGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLS 243
I ++SL L S N F V + K L ++ F+G K ++
Sbjct: 114 N-IS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHL 169
Query: 244 SLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQ---FTGPIPASISNASHLMRLTIP 300
L+ + +PN L+L + F+ + S++ HL I
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229
Query: 301 INGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVN--SLVNASRLELLGININNFG 358
+N + + + ++ L + E V +E L I
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289
Query: 359 GMLPEAVGNLSTR----LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSI 414
+ S L I V N + + + +L +
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349
Query: 415 GDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLE--GSIPSSLGKCQNLILLG 472
L N F + L L TL +N L+ + +L L
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409
Query: 473 LSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532
+S N+L + + L+LS N L G++ + + VLD+ N++ IP
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIM-SIP 466
Query: 533 NSLGSCVRLEQLGMNGNFFQGNIP-SSFSSLRGIENLDLSRNN 574
+ L++L + N + ++P F L ++ + L N
Sbjct: 467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 2e-16
Identities = 61/376 (16%), Positives = 115/376 (30%), Gaps = 32/376 (8%)
Query: 229 NKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASI 288
N +S I LS L N+++ SL + +LE L++ N+ I
Sbjct: 62 NSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISCC- 118
Query: 289 SNASHLMRLTIPINGFS--GKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASR 346
+ L L + N F FGNL KL ++ +S + + ++
Sbjct: 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI--- 174
Query: 347 LELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQF 406
LL + + G E++ +T + L N LF + N L L L +
Sbjct: 175 --LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN--ALGHLQLSNIKL 230
Query: 407 TGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQ 466
+ G + + ++ + F +E
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE----------- 279
Query: 467 NLILLGLSNNNLTGTIPTEVIGLSSLSI----YLDLSQNQLNGTLPSNFGILKNLGVLDV 522
L + N +T I E S ++ + + + + + + + +
Sbjct: 280 ---YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336
Query: 523 SENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKY 582
S + S L N F ++ S+L+ ++ L L RN L K
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKV 395
Query: 583 FENFLFLQNLNLSFNH 598
+ +L
Sbjct: 396 ALMTKNMSSLETLDVS 411
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 2e-14
Identities = 56/345 (16%), Positives = 119/345 (34%), Gaps = 29/345 (8%)
Query: 104 LDLKNNSFRNEIPQEIGYL--FRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNEL-- 159
LDL + + + + L ++ N+ F Q+ +++ +L+ + N+
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235
Query: 160 --VGKVPRKLGSLSKLRTLAVHYNNLSGQIPS---SFGNLSSLEVLSASANQFVGQIPKT 214
+ +L L + + + + + F +E L+ +I +
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295
Query: 215 L-----SQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269
+ LK + + +N ++ + + +
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSS 354
Query: 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGF---SGKVPSFGNLHKLQWVSISMNH 326
LN +N FT + S L L + NG N+ L+ + +S+N
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 327 LGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAV-GNLSTRLRILRVGNNQLFGN 385
L + D A + +L ++ N L +V L ++++L + NN++ +
Sbjct: 415 LNSHAYDRTCA-----WAESILVLNLSSNM----LTGSVFRCLPPKVKVLDLHNNRI-MS 464
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430
IP + +L L+ L + NQ G L LQ + L N +
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 7/186 (3%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFN 157
+ + + L + FL N F + S L++L L N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 158 EL--VGKVPRKLGSLSKLRTLAVHYNNL-SGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
L KV ++S L TL V N+L S + S+ VL+ S+N G + +
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLN 274
L +++ + N++ IP + +L +L NQL+ S+P + L +L+ +
Sbjct: 448 LPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503
Query: 275 LGENQF 280
L +N +
Sbjct: 504 LHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNISHC-- 146
++ N+S L LD+ NS + + + L L +N + ++ C
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN----MLTGSVFRCLP 449
Query: 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
++ L L N + +P+ + L L+ L V N L F L+SL+ + N
Sbjct: 450 PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Query: 207 F 207
+
Sbjct: 509 W 509
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 9e-30
Identities = 54/281 (19%), Positives = 98/281 (34%), Gaps = 29/281 (10%)
Query: 361 LPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKL 420
+ E N + R +I +V ++ L + S ++ N++ L L GN + + KL
Sbjct: 2 IHEIKQNGN-RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 421 QRLGLQGNKFLGEIP------------------SSIGNLTLLITLSFDKNMLEGSIPSSL 462
+ L L N L E + + TL N + + S
Sbjct: 61 ELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSR 118
Query: 463 GKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG-TLPSNFGILKNLGVLD 521
G Q + L+NN +T + S + YLDL N+++ L L+
Sbjct: 119 G--QGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 522 VSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPK 581
+ N + ++ + +L+ L ++ N + F S G+ + L N L I K
Sbjct: 176 LQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231
Query: 582 YFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDN 622
L++ +L N F N ++
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 45/390 (11%), Positives = 102/390 (26%), Gaps = 75/390 (19%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
I + + + ++ + L + S ++ L + N LS + + LE
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 199 VLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGS 258
+L+ S+N L L +R + N + + S+ N +
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113
Query: 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQ 318
+ + + L N+ T G ++Q
Sbjct: 114 VSCS---RGQGKKNIYLANNKITMLRDL-----------------------DEGCRSRVQ 147
Query: 319 WVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVG 378
++ + +N + +N L L +
Sbjct: 148 YLDLKLNEIDT----------------------VNFAELAASS--------DTLEHLNLQ 177
Query: 379 NNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI 438
N ++ ++ + L+ L L N+ + + + L+ NK L I ++
Sbjct: 178 YNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKAL 233
Query: 439 GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDL 498
L N +N + ++ + T L
Sbjct: 234 RFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKL--TGQNEEECTVPTLGH 290
Query: 499 SQNQLNGTLPSNFGILKNLGVLDVSENKLS 528
LP+ F ++ + +
Sbjct: 291 YGAYCCEDLPAPFA----DRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 64/361 (17%), Positives = 114/361 (31%), Gaps = 69/361 (19%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNL 149
++ N + ++ + ++S + + + ++ L L N +++ L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG 209
E L L N L L SLS LRTL ++ N + S+E L A+ N
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-S 112
Query: 210 QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269
++ S+ + + I NK++ S + Y + +N++ ++L +
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGN 329
LE LNL N V KL+ + +S N L
Sbjct: 171 LEHLNLQYNFIY-------------------------DVKGQVVFAKLKTLDLSSNKLAF 205
Query: 330 GEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG 389
+ + + + + NN+L I
Sbjct: 206 -------------------------------MGPEFQSA-AGVTWISLRNNKL-VLIEKA 232
Query: 390 LRNLVNLERLLLEGNQFT-GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLS 448
LR NLE L GN F G + ++Q + Q K L + L
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292
Query: 449 F 449
Sbjct: 293 A 293
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-20
Identities = 44/326 (13%), Positives = 101/326 (30%), Gaps = 23/326 (7%)
Query: 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNT 134
R + L+ +L+ + ++ LDL N ++ +L+ L L +N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 135 FGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNL 194
+ D + L +L L N + ++L + TL NN+S ++ S
Sbjct: 70 L-YETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS--RG 119
Query: 195 SSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSG-EIPFSIYNLSSLNYFEFPVN 253
+ + + N+ R++++ +N++ + +L + N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 254 QLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGN 313
+ + + L+ L+L N+ + +A+ + +++ N +
Sbjct: 180 FIY-DVKGQVV--FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF 235
Query: 314 LHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLR 373
L+ + N G D R++ + L T
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDF-----FSKNQRVQTVAKQTVKK---LTGQNEEECTVPT 287
Query: 374 ILRVGNNQLFGNIPSGLRNLVNLERL 399
+ G L+ L
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALGHH 313
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 8e-13
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 11/142 (7%)
Query: 457 SIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKN 516
+I + +++++L + + ++ LDLS N L+ ++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVK-ELDLSGNPLSQISAADLAPFTK 59
Query: 517 LGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS 576
L +L++S N L E L S L L +N N+ IE L + NN+S
Sbjct: 60 LELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112
Query: 577 GRIPKYFENFLFLQNLNLSFNH 598
R+ +N+ L+ N
Sbjct: 113 -RVS--CSRGQGKKNIYLANNK 131
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 1e-28
Identities = 78/399 (19%), Positives = 122/399 (30%), Gaps = 100/399 (25%)
Query: 170 LSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVN 229
+ L V + L+ +P + L N +P +L+ + G N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTLEVSG---N 91
Query: 230 KLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASIS 289
+L+ +P L L+ F P+ L L +L + NQ T +P
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLTS-LPVLPP 141
Query: 290 NASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLEL 349
LQ +S+S N L +
Sbjct: 142 G--------------------------LQELSVSDNQLAS-------------------- 155
Query: 350 LGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGR 409
LP L L NNQL ++P L+ L + NQ
Sbjct: 156 -----------LPALPSELCK----LWAYNNQL-TSLPM---LPSGLQELSVSDNQLA-S 195
Query: 410 IPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLI 469
+P +L+KL + L +P+ L L N L S+P L
Sbjct: 196 LPTLPSELYKLWAYNNR----LTSLPALPSGLK---ELIVSGNRLT-SLPVLPS---ELK 244
Query: 470 LLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSG 529
L +S N LT ++P GL SL + +NQL LP + L + +++ N LS
Sbjct: 245 ELMVSGNRLT-SLPMLPSGLLSL----SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298
Query: 530 EIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENL 568
+L F S+ R +
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 6e-28
Identities = 71/342 (20%), Positives = 112/342 (32%), Gaps = 52/342 (15%)
Query: 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFG 312
+ L +LP L ++ L + +N T +PA L L + N +
Sbjct: 50 SGLT-TLPDCLP---AHITTLVIPDNNLTS-LPALPPE---LRTLEVSGNQLTSLPVLPP 101
Query: 313 NLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRL 372
L +L S + HL +L + G + + LP L
Sbjct: 102 GLLELSIFSNPLTHL----------PALPSGLCKLWIFGNQLTS----LPVLPPGL---- 143
Query: 373 RILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLG 432
+ L V +NQL ++P+ L L NQ T +P LQ L + N+ L
Sbjct: 144 QELSVSDNQL-ASLPALPSELCKLW---AYNNQLT-SLPMLPS---GLQELSVSDNQ-LA 194
Query: 433 EIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSL 492
+P+ L L + N L S+P+ L L +S N LT ++P L L
Sbjct: 195 SLPTLPSELYKLWAYN---NRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPSELKEL 246
Query: 493 SIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQ 552
+S N+L +LP L L V N+L+ +P SL + + GN
Sbjct: 247 ----MVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297
Query: 553 GNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNL 594
+ + L
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 77/336 (22%), Positives = 114/336 (33%), Gaps = 51/336 (15%)
Query: 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLG 328
LN+GE+ T +P + H+ L IP N + L L +S N L
Sbjct: 41 GNAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLTSLPALPPELRTL---EVSGNQLT 94
Query: 329 NGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPS 388
L + + + LP L + L L + NQL ++P
Sbjct: 95 -------SLPVLPPGLLELSIFSNPLTH----LPA----LPSGLCKLWIFGNQL-TSLPV 138
Query: 389 GLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLS 448
L + L + NQ +P +L KL Q L +P L LS
Sbjct: 139 LPPGL---QELSVSDNQLA-SLPALPSELCKLWAYNNQ----LTSLPMLPSGLQ---ELS 187
Query: 449 FDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLP 508
N L S+P+ + L NN LT ++P GL L +S N+L +LP
Sbjct: 188 VSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSGLKEL----IVSGNRLT-SLP 237
Query: 509 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENL 568
L L VS N+L+ +P L L + N +P S L +
Sbjct: 238 VLPS---ELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTV 289
Query: 569 DLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604
+L N LS R + + F+
Sbjct: 290 NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 75/388 (19%), Positives = 123/388 (31%), Gaps = 58/388 (14%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELV 160
VL++ + +P + + L + +N +P L +L + N+L
Sbjct: 42 NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT 94
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKR 220
+P L +L + +L S L L NQ +P L+
Sbjct: 95 -SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQL-TSLPVLPPGLQE 145
Query: 221 MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
+ N+L+ +P L L + NQL SLP L+ L++ +NQ
Sbjct: 146 LSVSD---NQLA-SLPALPSELCKLWAYN---NQLT-SLPMLPS----GLQELSVSDNQL 193
Query: 281 TGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNS 340
+P S L +L N + L +L +S N L
Sbjct: 194 AS-LPTLPSE---LYKLWAYNNRLTSLPALPSGLKEL---IVSGNRLT-------SLPVL 239
Query: 341 LVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLL 400
S L+ L ++ N LP L L V NQL +P L +L + +
Sbjct: 240 P---SELKELMVS-GNRLTSLPMLPSGL----LSLSVYRNQL-TRLPESLIHLSSETTVN 290
Query: 401 LEGNQFTGRIPGSIGDLHKLQRLGLQ---GNKFLGEIPSSIGNLTLLITLSFDKNMLEGS 457
LEGN + R ++ ++ + P L L
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350
Query: 458 IP----SSLGKCQNLILLGLSNNNLTGT 481
P G+ N L + L+ T
Sbjct: 351 APADRWHMFGQEDNADAFSLFLDRLSET 378
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 2e-26
Identities = 78/416 (18%), Positives = 137/416 (32%), Gaps = 83/416 (19%)
Query: 112 RNEIPQEIGYLFR--LQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGS 169
R + Q++ L + + +PD + ++ +L + N L +P
Sbjct: 27 RAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLP---AL 79
Query: 170 LSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVN 229
+LRTL V N L+ +P L L + S +P S L ++ G N
Sbjct: 80 PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLWIFG---N 131
Query: 230 KLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASIS 289
+L+ +P L L+ + NQL SLP+ L +L NQ T +P S
Sbjct: 132 QLT-SLPVLPPGLQELSVSD---NQLA-SLPALPS----ELCKLWAYNNQLTS-LPMLPS 181
Query: 290 NASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLEL 349
LQ +S+S N L +L
Sbjct: 182 G--------------------------LQELSVSDNQLA-------SLPTLPSELYKLWA 208
Query: 350 LGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGR 409
+ + LP L + L V N+L ++P L L + GN+ T
Sbjct: 209 YNNRLTS----LPALPSGL----KELIVSGNRL-TSLPVLPSELKELM---VSGNRLT-S 255
Query: 410 IPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLI 469
+P L L + N+ L +P S+ +L+ T++ + N L + +
Sbjct: 256 LPMLPS---GLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS-ERTLQA--LREIT 308
Query: 470 LLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSEN 525
+ + ++ G S+ L + +P+ G +
Sbjct: 309 SAPGYSGPII---RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 29/147 (19%)
Query: 684 PSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR----- 738
P L + R S + L A+D FS +N++G G FG VYKG L TLVAVKR
Sbjct: 10 PEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADG---TLVAVKRLKEER 66
Query: 739 ----------------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPK 782
HRNL+++ C + + LVY +M NGS+ L +
Sbjct: 67 TQGGELQFQTEVEMISMAVHRNLLRLRGFCM----TPTE-RLLVYPYMANGSVASCLRER 121
Query: 783 PEAPRNSNLLQRLSIAVDVASALDYLH 809
PE+ + +R IA+ A L YLH
Sbjct: 122 PESQPPLDWPKRQRIALGSARGLAYLH 148
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-26
Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 8/234 (3%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425
+ST R+L + NQ+ I ++L +LE L L N G+ L L L L
Sbjct: 61 GISTNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119
Query: 426 QGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPT 484
N+ L IP+ L+ L L N +E + + +L L L I
Sbjct: 120 FDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 485 EV-IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 543
GLS+L YL+L+ L +P+ L L LD+S N LS P S + L++
Sbjct: 179 GAFEGLSNLR-YLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 544 LGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597
L M + Q ++F +L+ + ++L+ NNL+ F L+ ++L N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 9/234 (3%)
Query: 345 SRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEG 403
+ LL ++ N + + +L L IL++ N + I G L NL L L
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFD 121
Query: 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLS-FDKNMLEGSIPSS 461
N+ T G+ L KL+ L L+ N + IPS + L L + L +
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180
Query: 462 LGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLD 521
NL L L+ NL IP + L L LDLS N L+ P +F L +L L
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLD-ELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 522 VSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNL 575
+ ++++ N+ + L ++ + N F+ L +E + L N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 8e-20
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 11/215 (5%)
Query: 339 NSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLE 397
NS + LE+L ++ N+ + A L L L + +N+L IP+G L L+
Sbjct: 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDNRL-TTIPNGAFVYLSKLK 139
Query: 398 RLLLEGNQFTGRIP-GSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKNMLE 455
L L N IP + + L+RL L K L I L+ L L+ L
Sbjct: 140 ELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 456 GSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQLNGTLPSNFGIL 514
IP+ L L L LS N+L+ I GL L L + Q+Q+ + F L
Sbjct: 199 -EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQ-KLWMIQSQIQVIERNAFDNL 254
Query: 515 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGN 549
++L ++++ N L+ + LE++ ++ N
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 1e-17
Identities = 56/240 (23%), Positives = 92/240 (38%), Gaps = 14/240 (5%)
Query: 387 PSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLIT 446
PS +++ +P I + L L N+ +S +L L
Sbjct: 36 PSVCSCSNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEI 92
Query: 447 LSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIYLDLSQNQLNG 505
L +N + + NL L L +N LT TIP + LS L L L N +
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLK-ELWLRNNPIES 150
Query: 506 TLPSNFGILKNLGVLDVSE-NKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRG 564
F + +L LD+ E +LS + L L + + IP + + L
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIK 208
Query: 565 IENLDLSRNNLSGRIPKY-FENFLFLQNLNLSFNHFEGEVPIKGVFSNSSA-VSLDGNDN 622
++ LDLS N+LS I F+ + LQ L + + + + + F N + V ++ N
Sbjct: 209 LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIE-RNAFDNLQSLVEINLAHN 265
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 6e-17
Identities = 69/368 (18%), Positives = 112/368 (30%), Gaps = 94/368 (25%)
Query: 71 SPRHQRVTALLLPSLLLQGSLSPHIGN---------LSFLRVLDLKNNSFRNEIPQEIGY 121
SP + + L S+LL G ++ + + + R E+P I
Sbjct: 6 SPGMPALLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLR-EVPDGIST 64
Query: 122 LFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN 181
+ L L N ++ H +LE L+L N + L+ L TL + N
Sbjct: 65 --NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 182 NLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYN 241
L+ +F LS L+ L N +++ +R + +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL----------------D 166
Query: 242 LSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPI 301
L L +L + L NL LNL
Sbjct: 167 LGEL-------KRLS-YISEGAFEGLSNLRYLNLAMCNLR-------------------- 198
Query: 302 NGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGML 361
++P+ L KL + +S NHL I +F G+
Sbjct: 199 -----EIPNLTPLIKLDELDLSGNHLSA----------------------IRPGSFQGL- 230
Query: 362 PEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKL 420
L+ L + +Q+ I NL +L + L N T LH L
Sbjct: 231 --------MHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281
Query: 421 QRLGLQGN 428
+R+ L N
Sbjct: 282 ERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-16
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 14/229 (6%)
Query: 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-- 310
NQ+Q + + L +LE L L N + + ++L L + N + +P+
Sbjct: 74 NQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGA 131
Query: 311 FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLST 370
F L KL+ + + N + + + SL RL+L + + A L +
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLR---RLDLG--ELKRLSYISEGAFEGL-S 185
Query: 371 RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430
LR L + L IP+ L L+ L+ L L GN + PGS L LQ+L + ++
Sbjct: 186 NLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ- 242
Query: 431 LGEIPS-SIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNL 478
+ I + NL L+ ++ N L +L + L +N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 60/269 (22%), Positives = 95/269 (35%), Gaps = 33/269 (12%)
Query: 336 EFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVN 395
++ ++ + L G N N +L E L + L++ L ++P L
Sbjct: 28 DYFSAWDKWEKQALPGENRNEAVSLLKEC---LINQFSELQLNRLNL-SSLPDNLPP--Q 81
Query: 396 LERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLE 455
+ L + N +P L + L N+ L +P +L L D N L
Sbjct: 82 ITVLEITQNALI-SLPELPASL---EYLDACDNR-LSTLPELPASLK---HLDVDNNQLT 133
Query: 456 GSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILK 515
+P L + NN LT +P +SL L + NQL LP + +
Sbjct: 134 -MLPELPA---LLEYINADNNQLT-MLPEL---PTSLE-VLSVRNNQLT-FLPE---LPE 180
Query: 516 NLGVLDVSENKLSGEIPNSLGSCVRLEQ----LGMNGNFFQGNIPSSFSSLRGIENLDLS 571
+L LDVS N L +P E+ N +IP + SL + L
Sbjct: 181 SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238
Query: 572 RNNLSGRIPKYFENFLFLQNLNLSFNHFE 600
N LS RI + + + +F
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 59/320 (18%)
Query: 235 IPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHL 294
I I N SL+ F N + +D E+ L A L
Sbjct: 3 IMLPINNNFSLSQNSFY-NTIS-GTYADYFSAWDKWEKQALPGENRN--------EAVSL 52
Query: 295 MRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGINI 354
++ + +++ + ++ +L ++L ++ +L I
Sbjct: 53 LKECL--------------INQFSELQLNRLNLS-------SLPDNL--PPQITVLEITQ 89
Query: 355 NNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSI 414
N LPE +L L +N+L +P +L +L+ ++ NQ T +P
Sbjct: 90 NALI-SLPELPASL----EYLDACDNRL-STLPELPASLKHLD---VDNNQLT-MLPELP 139
Query: 415 GDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLS 474
L+ + N+ L +P +L LS N L +P +L L +S
Sbjct: 140 A---LLEYINADNNQ-LTMLPELPTSLE---VLSVRNNQLT-FLPELPE---SLEALDVS 188
Query: 475 NNNLTGTIPTEVIGLSSLS---IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEI 531
N L ++P + I+ +N++ +P N L + + +N LS I
Sbjct: 189 TNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246
Query: 532 PNSLGSCVRLEQLGMNGNFF 551
SL +F
Sbjct: 247 RESLSQQTAQPDYHGPRIYF 266
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 7e-18
Identities = 66/428 (15%), Positives = 117/428 (27%), Gaps = 96/428 (22%)
Query: 138 QIPDNISHCV-NLESLRLGFNELVGKVPRKL--GSLSKLRTLAVHYNNLSGQIPSSFGNL 194
+ E L E + L +++ L ++ NLS +P +
Sbjct: 24 GTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP-- 79
Query: 195 SSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQ 254
+ VL + N + +P+ + L+ + N+LS +P +L L+ NQ
Sbjct: 80 PQITVLEITQNALI-SLPELPASLEYLDACD---NRLS-TLPELPASLKHLDVDN---NQ 131
Query: 255 LQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNL 314
L LP LE +N NQ T +P ++
Sbjct: 132 LT-MLPELPA----LLEYINADNNQLTM-LPELPTS------------------------ 161
Query: 315 HKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRI 374
L+ +S+ N L LPE +L
Sbjct: 162 --LEVLSVRNNQLTF-------------------------------LPELPESL----EA 184
Query: 375 LRVGNNQLFGNIPSGLRNLVNLERLL----LEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430
L V N L ++P+ + E N+ T IP +I L + L+ N
Sbjct: 185 LDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242
Query: 431 LGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLS 490
I S+ T + S + L ++V
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD--AVTAWFPENKQSDV---- 296
Query: 491 SLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNF 550
I+ + T + L + + ++ L +L
Sbjct: 297 -SQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG-FREQVAAWLEKLSASAELRQQSFA 354
Query: 551 FQGNIPSS 558
+ S
Sbjct: 355 VAADATES 362
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 3e-17
Identities = 66/425 (15%), Positives = 124/425 (29%), Gaps = 70/425 (16%)
Query: 27 MHKSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLL 86
M N L+ F ++ + S+W+ +W+ ++ LL L
Sbjct: 4 MLPINNNFSLSQNSFYNTISGTYADYFSAWD------KWEKQALPGENRNEAVSLLKECL 57
Query: 87 LQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHC 146
+ L L + +P + ++ L + N +P+ +
Sbjct: 58 INQ-----------FSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPA-- 100
Query: 147 VNLESLRLGFNELVGKVPRKLGSL-----------------SKLRTLAVHYNNLSGQIPS 189
+LE L N L +P SL + L + N L+ +P
Sbjct: 101 -SLEYLDACDNRLS-TLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE 157
Query: 190 SFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFE 249
+SLEVLS NQ +P+ L+ + N L +P E
Sbjct: 158 L---PTSLEVLSVRNNQL-TFLPELPESLEALDVST---NLLE-SLPAVPVRNHHSEETE 209
Query: 250 FPV----NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFS 305
N++ +P ++ +L + L +N + I S+S + P FS
Sbjct: 210 IFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
Query: 306 GKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAV 365
LH+ +++ N + D + ++ + ++ A
Sbjct: 268 MSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRL-SDTVSAR 326
Query: 366 GNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425
R ++ L L L + S D L L
Sbjct: 327 NTSGFREQVAAW------------LEKLSASAELRQQSFAVAADATESCEDRVALTWNNL 374
Query: 426 QGNKF 430
+
Sbjct: 375 RKTLL 379
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 6e-24
Identities = 65/264 (24%), Positives = 107/264 (40%), Gaps = 21/264 (7%)
Query: 345 SRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEG 403
LL + N + NL L L + NN++ I G LV LERL L
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKI-SKISPGAFAPLVKLERLYLSK 109
Query: 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSI--PS 460
NQ +P + LQ L + N+ + ++ S+ L +I + N L+ S
Sbjct: 110 NQLK-ELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 461 SLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVL 520
+ + L + +++ N+T TIP + SL+ L L N++ ++ L NL L
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLT-ELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 521 DVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSG--- 577
+S N +S SL + L +L +N N +P + + I+ + L NN+S
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 578 ---RIPKYFENFLFLQNLNLSFNH 598
P Y ++L N
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNP 304
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 9e-21
Identities = 71/364 (19%), Positives = 119/364 (32%), Gaps = 97/364 (26%)
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232
L + N ++ F NL +L L N+ P +
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA---------------- 97
Query: 233 GEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNAS 292
L L NQL+ LP + L+ L + EN+ T
Sbjct: 98 --------PLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEIT----------- 134
Query: 293 HLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGI 352
+ + F L+++ V + N L + GI
Sbjct: 135 -----KVRKS-------VFNGLNQMIVVELGTNPLKS--------------------SGI 162
Query: 353 NINNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPG 412
F GM +L +R+ + + IP GL +L L L+GN+ T
Sbjct: 163 ENGAFQGM---------KKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAA 210
Query: 413 SIGDLHKLQRLGLQGNKFLGEIPS-SIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILL 471
S+ L+ L +LGL N + + + S+ N L L + N L +P L + + ++
Sbjct: 211 SLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 472 GLSNNNLTGTIPTEVI-------GLSSLSIYLDLSQNQLNGTL--PSNFGILKNLGVLDV 522
L NNN++ I + +S S + L N + PS F + + +
Sbjct: 269 YLHNNNIS-AIGSNDFCPPGYNTKKASYS-GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326
Query: 523 SENK 526
K
Sbjct: 327 GNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 8e-17
Identities = 66/339 (19%), Positives = 113/339 (33%), Gaps = 72/339 (21%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNEL 159
+LDL+NN + L L L L NN +I + V LE L L N+L
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQL 112
Query: 160 VGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLK 219
++P K+ L+ L VH N ++ S F L+ + V+ N S ++
Sbjct: 113 K-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL------KSSGIE 163
Query: 220 RMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQ 279
F G + L+Y + ++P L P+L L+L N+
Sbjct: 164 NGAFQG----------------MKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNK 203
Query: 280 FTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVN 339
T + G L+ L + +S N + +
Sbjct: 204 IT----------------KVDAASLKG-------LNNLAKLGLSFNSISAVDN------G 234
Query: 340 SLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-------LRN 392
SL N L L +N N +P + + ++++ + NN + I S
Sbjct: 235 SLANTPHLRELHLNNNKL-VKVPGGLADH-KYIQVVYLHNNNI-SAIGSNDFCPPGYNTK 291
Query: 393 LVNLERLLLEGNQFTGRI--PGSIGDLHKLQRLGLQGNK 429
+ + L N P + ++ + L K
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 21/242 (8%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156
NL L L L NN P L +L+ L+L N ++P+ + L+ LR+
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPK--TLQELRVHE 130
Query: 157 NELVGKVPRKLGSLSKLRTLAVHYNNL-SGQIPS-SFGNLSSLEVLSASANQFVGQIPKT 214
NE+ L+++ + + N L S I + +F + L + +
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190
Query: 215 LSQLKRMRFIGFGVNKLSGEIPF-SIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERL 273
L + G NK++ ++ S+ L++L N + ++ + P+L L
Sbjct: 191 PPSLTELHLDG---NKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLREL 245
Query: 274 NLGENQFTGPIPASISNASHLMRL--------TIPINGFSGKVPSFGNLHKLQWVSISMN 325
+L N+ +P +++ ++ + I N F VS+ N
Sbjct: 246 HLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG-YNTKKASYSGVSLFSN 303
Query: 326 HL 327
+
Sbjct: 304 PV 305
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 20/178 (11%)
Query: 473 LSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532
S+ L +P L + LDL N++ +F LKNL L + NK+S P
Sbjct: 38 CSDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 533 NSLGSCVRLEQLGMNGNFFQGNIPSS-FSSLRGIENLDLSRNNLSGRIPKY-FENFLFLQ 590
+ V+LE+L ++ N + +P +L+ L + N ++ ++ K F +
Sbjct: 94 GAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQ---ELRVHENEIT-KVRKSVFNGLNQMI 148
Query: 591 NLNLSFNHFEGEVPIKGVFSNSSAV---SLDGN------DNLCGGISELHLSTCSIKE 639
+ L N + G F + + L ++ELHL I +
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-24
Identities = 72/386 (18%), Positives = 134/386 (34%), Gaps = 33/386 (8%)
Query: 229 NKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASI 288
N ++ S L L + + + ++ L +L L L NQF +
Sbjct: 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGA 98
Query: 289 -SNASHLMRLTIPINGF-SGKVP--SFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNA 344
+ ++L LT+ + F L L+ + + N++ ++ + +N
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-----KKIQPASFFLNM 153
Query: 345 SRLELLGININNFGGMLPEAVGNL-STRLRILRVGNNQL-------FGNIPSG-LRNLVN 395
R +L + N + E + N +LR+ + L G G +
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 396 LERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLE 455
+ L L GN F + D ++ + L + + D +
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKI---QSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 456 GSIPSSLGKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIYLDLSQNQLNGTLPSN-FGI 513
G S + LS + + + V + L L L+QN++N + N F
Sbjct: 271 GLEAS------GVKTCDLSKSKIF-ALLKSVFSHFTDLE-QLTLAQNEIN-KIDDNAFWG 321
Query: 514 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573
L +L L++S+N L + +LE L ++ N + SF L ++ L L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 574 NLSGRIPKYFENFLFLQNLNLSFNHF 599
L F+ LQ + L N +
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 79/417 (18%), Positives = 136/417 (32%), Gaps = 69/417 (16%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
L L+ L ++ + I L L L LD N F Q+ + NLE L L
Sbjct: 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTL 110
Query: 155 GFNELVGKV--PRKLGSLSKLRTLAVHYNNLSGQIPSS-FGNLSSLEVLSASANQFVGQI 211
L G V L+ L L + NN+ P+S F N+ VL + N+
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK----- 165
Query: 212 PKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLE 271
+ + + F ++ LSS+ + L F ++
Sbjct: 166 ---VKSICEEDLLNFQGKHF------TLLRLSSITLQDMNEYWLG-WEKCGNPFKNTSIT 215
Query: 272 RLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGE 331
L+L N F + +A ++ L + G+
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQ---------------SLILSNSYNMGSSFGH-- 258
Query: 332 KDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL- 390
+ + G+ + ++ + +++F + +
Sbjct: 259 -------TNFKDPDNFTFKGLEASG---------------VKTCDLSKSKIF-ALLKSVF 295
Query: 391 RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSF 449
+ +LE+L L N+ + L L +L L N LG I S + NL L L
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDL 354
Query: 450 DKNMLEGSIPS-SLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQLN 504
N + ++ S NL L L N L ++P + L+SL + L N +
Sbjct: 355 SYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQ-KIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 51/332 (15%), Positives = 101/332 (30%), Gaps = 82/332 (24%)
Query: 90 SLSPHI--GNLSFLRVLDLKNNSFRNEIPQEIGY-----------LFRLQFLWLDNNTFG 136
+ P N+ VLDL N ++ I +E L + ++ G
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 137 GQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSS 196
+ N ++ +L L N + ++ + + S + SS
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS---FGH 258
Query: 197 LEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSI-YNLSSLNYFEFPVNQL 255
F G + +K+ + S+ + + L N++
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCD------LSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI 311
Query: 256 QGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLH 315
+ + + L +L +LNL +N +I F L
Sbjct: 312 N-KIDDNAFWGLTHLLKLNLSQNFLG----------------SIDSRMFEN-------LD 347
Query: 316 KLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRIL 375
KL+ + +S NH+ + +F G+ L+ L
Sbjct: 348 KLEVLDLSYNHIRA----------------------LGDQSFLGL---------PNLKEL 376
Query: 376 RVGNNQLFGNIPSG-LRNLVNLERLLLEGNQF 406
+ NQL ++P G L +L+++ L N +
Sbjct: 377 ALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 45/221 (20%), Positives = 74/221 (33%), Gaps = 34/221 (15%)
Query: 61 HFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIG 120
+K + + SL+L S + + D N +F+
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM-GSSFGHTNFKDPDNFTFKGLEASG-- 276
Query: 121 YLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVH 179
++ L + + ++ SH +LE L L NE+ L+ L L +
Sbjct: 277 ----VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 180 YNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSI 239
N L F NL LEVL S N + L F+G
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNH--------IRALGDQSFLG-------------- 369
Query: 240 YNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
L +L NQL+ S+P + L +L+++ L N +
Sbjct: 370 --LPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 46/148 (31%)
Query: 695 SYQNLFKATDGFSLE------NLIGAGSFGSVYKGILNHDDHETLVAVKR---------- 738
S+ L T+ F N +G G FG VYKG +N T VAVK+
Sbjct: 16 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN----NTTVAVKKLAAMVDITTE 71
Query: 739 --------------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPE 784
+H NLV+++ + D LVY +M NGSL + L
Sbjct: 72 ELKQQFDQEIKVMAKCQHENLVELLGFSSD-----GDDLCLVYVYMPNGSLLDRLSCLDG 126
Query: 785 APRNSNLL---QRLSIAVDVASALDYLH 809
P L R IA A+ +++LH
Sbjct: 127 TPP----LSWHMRCKIAQGAANGINFLH 150
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 3e-23
Identities = 58/223 (26%), Positives = 85/223 (38%), Gaps = 10/223 (4%)
Query: 379 NNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI 438
Q +P G+ +R+ L GN+ + S L L L N L I ++
Sbjct: 19 PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAA 75
Query: 439 -GNLTLLITLSFDKNMLEGSIPSS-LGKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIY 495
L LL L N S+ + L L L L + + GL++L Y
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ-Y 133
Query: 496 LDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554
L L N L LP + F L NL L + N++S + L++L ++ N
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 555 IPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597
P +F L + L L NNLS + LQ L L+ N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 8e-23
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 8/213 (3%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425
+ + + + N++ ++P+ R NL L L N + L L++L L
Sbjct: 29 GIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 426 QGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPS-SLGKCQNLILLGLSNNNLTGTIP 483
N L + + L L TL D+ L+ + L L L +N L +P
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALP 145
Query: 484 TEV-IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 542
+ L +L+ +L L N+++ F L +L L + +N+++ P++ RL
Sbjct: 146 DDTFRDLGNLT-HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 543 QLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNL 575
L + N + + LR ++ L L+ N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 4/186 (2%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLG 155
L +L L +N L L+ L L +N + L +L L
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113
Query: 156 FNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPS-SFGNLSSLEVLSASANQFVGQIPKT 214
L P L+ L+ L + N L +P +F +L +L L N+ +
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLN 274
L + + N+++ P + +L L N L +LP++ L L+ L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLR 231
Query: 275 LGENQF 280
L +N +
Sbjct: 232 LNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 50/292 (17%), Positives = 82/292 (28%), Gaps = 82/292 (28%)
Query: 138 QIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSL 197
+P I + + L N + + L L +H N L+ ++F L+ L
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 198 EVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257
E L S N + + F L L+ LQ
Sbjct: 83 EQLDLSDNAQLRSVDPAT---------------------FH--GLGRLHTLHLDRCGLQ- 118
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKL 317
L L L L+ L L +N +P + F L L
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQ----------------ALPDDTFRD-------LGNL 155
Query: 318 QWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRV 377
+ + N + + + F G+ L L +
Sbjct: 156 THLFLHGNRISS----------------------VPERAFRGL---------HSLDRLLL 184
Query: 378 GNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428
N++ ++ R+L L L L N + ++ L LQ L L N
Sbjct: 185 HQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 43/227 (18%), Positives = 71/227 (31%), Gaps = 27/227 (11%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNEL 159
+ + L N + L LWL +N +I + LE L L N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 160 VGKVPRK-LGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQL 218
+ V L +L TL + L P F L++L+ L N T L
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 219 KRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGEN 278
+ + N++S + L SL+ N++ + L L L L N
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211
Query: 279 QFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMN 325
+ +P + L LQ++ ++ N
Sbjct: 212 NLS----------------ALPTEALAP-------LRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 47/200 (23%), Positives = 71/200 (35%), Gaps = 13/200 (6%)
Query: 428 NKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV- 486
+ L +P I + N + +S C+NL +L L +N L I
Sbjct: 20 QQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAF 76
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSGEIP-NSLGSCVRLEQL 544
GL+ L LDLS N ++ F L L L + L E+ L+ L
Sbjct: 77 TGLALLE-QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134
Query: 545 GMNGNFFQGNIPS-SFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEV 603
+ N Q +P +F L + +L L N +S + F L L L N V
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192
Query: 604 PIKGVFSN-SSAVSLDGNDN 622
F + ++L N
Sbjct: 193 H-PHAFRDLGRLMTLYLFAN 211
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLG 155
L+ L+ L L++N+ + +P + L L L+L N +L+ L L
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 156 FNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208
N + P L +L TL + NNLS + L +L+ L + N +V
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 12/253 (4%)
Query: 379 NNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK--FLGEIPS 436
N++ ++P+G+ + RL LE N+ G L +L +L L N F G
Sbjct: 15 NSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72
Query: 437 SIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIY 495
S T L L N + ++ S+ + L L ++NL V + L +L IY
Sbjct: 73 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IY 130
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEI-PNSLGSCVRLEQLGMNGNFFQGN 554
LD+S F L +L VL ++ N P+ L L ++ +
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 555 IPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP---IKGVFSN 611
P++F+SL ++ L++S NN ++ LQ L+ S NH ++ S+
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSS 249
Query: 612 SSAVSLDGNDNLC 624
+ ++L ND C
Sbjct: 250 LAFLNLTQNDFAC 262
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 56/262 (21%), Positives = 95/262 (36%), Gaps = 36/262 (13%)
Query: 345 SRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQL-FGNIPSG-LRNLVNLERLLLE 402
S L + N + L T+L L + +N L F S +L+ L L
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 403 GNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSS--IGNLTLLITLSFDKNMLEGSIPS 460
N + + L +L+ L Q + L ++ +L LI L +
Sbjct: 87 FNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 461 SLGKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIYLDLSQNQLNGTLPSN-FGILKNLG 518
+L +L ++ N+ ++ L +L+ +LDLSQ QL L F L +L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLE-QLSPTAFNSLSSLQ 202
Query: 519 VLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGR 578
VL++S N + + L ++ LD S N++
Sbjct: 203 VLNMSHNNFF-SLD-----------------------TFPYKCLNSLQVLDYSLNHIMTS 238
Query: 579 IPKYFENFL-FLQNLNLSFNHF 599
+ ++F L LNL+ N F
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 5e-20
Identities = 55/277 (19%), Positives = 95/277 (34%), Gaps = 42/277 (15%)
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKL 317
S+P+ + + RL L N+ +P F L +L
Sbjct: 21 SVPTGI---PSSATRLELESNKLQS-LPHG----------------------VFDKLTQL 54
Query: 318 QWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRV 377
+S+S N L + + L+ L ++ N + L +L L
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGT----TSLKYLDLSFNGVI-TMSSNFLGL-EQLEHLDF 108
Query: 378 GNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPS 436
++ L + +L NL L + G L L+ L + GN F
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
Query: 437 SI-GNLTLLITLSFDKNMLEGSIPSSLGKC-QNLILLGLSNNNLTGTIPTEVI-GLSSLS 493
I L L L + LE + + +L +L +S+NN ++ T L+SL
Sbjct: 169 DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQ 226
Query: 494 IYLDLSQNQLNGTLPSN--FGILKNLGVLDVSENKLS 528
LD S N + T +L L++++N +
Sbjct: 227 -VLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 47/283 (16%), Positives = 92/283 (32%), Gaps = 38/283 (13%)
Query: 104 LDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNEL--VG 161
+ + +P I L L++N L L L N L G
Sbjct: 12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 162 KVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPK--TLSQLK 219
+ + L+ L + +N + + S+F L LE L + Q+ + L+
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLR 126
Query: 220 RMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQ 279
+ ++ LSSL + N Q + D+ L NL L+L + Q
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 280 FTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVN 339
+ +F +L LQ +++S N+ + +
Sbjct: 187 LE----------------QLSPT-------AFNSLSSLQVLNMSHNNFFSLDT------F 217
Query: 340 SLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQL 382
+ L++L ++N+ + + + + L L + N
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 6/189 (3%)
Query: 97 NLSFLRVLDLKNN--SFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
L+ L L L +N SF+ Q L++L L N + N LE L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDF 108
Query: 155 GFNELVGKVPRKL-GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQI-P 212
+ L + SL L L + + + F LSSLEVL + N F P
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLER 272
++L+ + F+ +L P + +LSSL N SL + L +L+
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQV 227
Query: 273 LNLGENQFT 281
L+ N
Sbjct: 228 LDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 28/194 (14%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCV 147
++S + L L LD ++++ + + L L +L + + + I +
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLS 150
Query: 148 NLESLRLGFNELVGKVPRK-LGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
+LE L++ N L L L + L P++F +LSSL+VL+ S N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFT 266
F L ++ + + S N + S +L
Sbjct: 211 FFSLDTFPYKCLNSLQVL----------------DYSL--------NHIMTSKKQELQHF 246
Query: 267 LPNLERLNLGENQF 280
+L LNL +N F
Sbjct: 247 PSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNF--FQG 553
+ + L ++P+ GI + L++ NKL +L +L ++ N F+G
Sbjct: 12 IRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 554 NIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSN 611
S ++ LDLS N + + F L++L+ ++ + ++ VF +
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLS 124
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 22/277 (7%)
Query: 345 SRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEG 403
LL + N+ + + L L L + NN++ I L L++L +
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGL-QHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISK 111
Query: 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKNML-EGSIPSS 461
N IP ++ L L + N+ + ++P + L + + N L
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167
Query: 462 LGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLD 521
L L +S LT IP ++ +L+ L L N++ + L L
Sbjct: 168 AFDGLKLNYLRISEAKLT-GIPKDL--PETLN-ELHLDHNKIQAIELEDLLRYSKLYRLG 223
Query: 522 VSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP- 580
+ N++ SL L +L ++ N +P+ L+ ++ + L NN++ ++
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281
Query: 581 ------KYFENFLFLQNLNLSFNHFEGEVPIKGVFSN 611
+ + ++L N F
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 4e-21
Identities = 64/320 (20%), Positives = 114/320 (35%), Gaps = 38/320 (11%)
Query: 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP--SFGNLHKLQWVSISMNH 326
+L + + +P IS L + N S ++ F L L + + N
Sbjct: 34 HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89
Query: 327 LGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNI 386
+ + + +L+ L I+ N+ L E NL + L LR+ +N++ +
Sbjct: 90 ISKIHE------KAFSPLRKLQKLYISKNH----LVEIPPNLPSSLVELRIHDNRIR-KV 138
Query: 387 PSG-LRNLVNLERLLLEGNQFT-GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLL 444
P G L N+ + + GN D KL L + K L IP L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPK--DLPETL 195
Query: 445 ITLSFDKNMLEGSIPS-SLGKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIYLDLSQNQ 502
L D N ++ +I L + L LGL +N + I L +L L L N+
Sbjct: 196 NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLR-ELHLDNNK 252
Query: 503 LNGTLPSNFGILKNLGVLDVSENKLSGEIPNS-------LGSCVRLEQLGMNGNFFQGNI 555
L+ +P+ LK L V+ + N ++ ++ + + + N
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310
Query: 556 --PSSFSSLRGIENLDLSRN 573
P++F + +
Sbjct: 311 VQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 67/364 (18%), Positives = 111/364 (30%), Gaps = 77/364 (21%)
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232
LR + L +P +L N L+ + + NK+S
Sbjct: 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 233 GEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNAS 292
+ L L N L +P +L +L L + +N+
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL---PSSLVELRIHDNRIR----------- 136
Query: 293 HLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGI 352
+P FSG L + + + N LE G
Sbjct: 137 -----KVPKGVFSG-------LRNMNCIEMGGN--------------------PLENSGF 164
Query: 353 NINNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPG 412
F G+ +L LR+ +L IP L L L L+ N+
Sbjct: 165 EPGAFDGL----------KLNYLRISEAKL-TGIPKDL--PETLNELHLDHNKIQAIELE 211
Query: 413 SIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILL 471
+ KL RLGL N+ + I + L L L D N L +P+ L + L ++
Sbjct: 212 DLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269
Query: 472 GLSNNNLTGTIPTEV-------IGLSSLSIYLDLSQNQLNGTL--PSNFGILKNLGVLDV 522
L NN+T + + + + + L N + P+ F + + +
Sbjct: 270 YLHTNNIT-KVGVNDFCPVGFGVKRAYYN-GISLFNNPVPYWEVQPATFRCVTDRLAIQF 327
Query: 523 SENK 526
K
Sbjct: 328 GNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 65/374 (17%), Positives = 110/374 (29%), Gaps = 100/374 (26%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
+P IS + L L N++ L L L + N +S +F L L+
Sbjct: 48 VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 199 VLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGS 258
L +S N L
Sbjct: 106 KL----------------------------------------YISK--------NHLV-E 116
Query: 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQ 318
+P +L +L L + +N+ +P FSG L +
Sbjct: 117 IPPNL---PSSLVELRIHDNRIR----------------KVPKGVFSG-------LRNMN 150
Query: 319 WVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVG 378
+ + N L N + F +L L I+ G+ + L L +
Sbjct: 151 CIEMGGNPLENSGFEPGAFDG-----LKLNYLRISEAKLTGIPKDLPETL----NELHLD 201
Query: 379 NNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSS 437
+N++ I L L RL L NQ GS+ L L+ L L NK L +P+
Sbjct: 202 HNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG 259
Query: 438 IGNLTLLITLSFDKNMLEGSIPSS-------LGKCQNLILLGLSNNNLT-GTIPTEVI-G 488
+ +L LL + N + + + K + L NN + +
Sbjct: 260 LPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318
Query: 489 LSSLSIYLDLSQNQ 502
++ + +
Sbjct: 319 VTDRL-AIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 56/290 (19%), Positives = 95/290 (32%), Gaps = 39/290 (13%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156
L L L L NN + L +LQ L++ N +IP N+ +L LR+
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLPS--SLVELRIHD 132
Query: 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQI--PSSFGNLSSLEVLSASANQFVGQIPKT 214
N + L + + + N L P +F L L L S + G
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL 191
Query: 215 LSQLKRMRFIGFGVNKLSGEIP-FSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERL 273
L + NK+ I + S L NQ++ + + LP L L
Sbjct: 192 PETLNELHLDH---NKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLREL 246
Query: 274 NLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKD 333
+L N+ + +P +L LQ V + N++ +
Sbjct: 247 HLDNNKLS----------------RVP--------AGLPDLKLLQVVYLHTNNITKVGVN 282
Query: 334 DLEFVNSLVNASRLELLGININN--FGGMLPEAVGNLSTRLRILRVGNNQ 381
D V V + + + N + + P + T ++ GN +
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV-TDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 17/176 (9%)
Query: 473 LSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532
S+ L +P +S + LDL N ++ +F L++L L + NK+S
Sbjct: 40 CSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95
Query: 533 NSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKY-FENFLFLQN 591
+ +L++L ++ N P+ SSL L + N + ++PK F +
Sbjct: 96 KAFSPLRKLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIR-KVPKGVFSGLRNMNC 151
Query: 592 LNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGIS--------ELHLSTCSIKE 639
+ + N E G F L ++ GI ELHL I+
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA 207
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 3e-22
Identities = 84/459 (18%), Positives = 161/459 (35%), Gaps = 56/459 (12%)
Query: 80 LLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQI 139
+ + +Q + + L+ L LD N+S ++ I L L L +N I
Sbjct: 23 EVAAAFEMQATDTISEEQLATLTSLDCHNSSI-TDMT-GIEKLTGLTKLICTSN----NI 76
Query: 140 PD-NISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
++S NL L N+L + L+KL L N L+ L
Sbjct: 77 TTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT---KLDVSQNPLLT 130
Query: 199 VLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGS 258
L+ + N +I +S ++ + +NK ++ + + L + N++
Sbjct: 131 YLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVT--PQTQLTTLDCSFNKI--- 182
Query: 259 LPSDLGFT-LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKL 317
++L + L RLN N T ++ L L N + L +L
Sbjct: 183 --TELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--IDVTPLTQL 235
Query: 318 QWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRV 377
+ S+N L + L + +L + + +LL I++ + T+L +
Sbjct: 236 TYFDCSVNPLTELDVSTLSKLTTL-HCIQTDLLEIDLTHN------------TQLIYFQA 282
Query: 378 GNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSS 437
+ + + + L L + T + KL L L + L E+
Sbjct: 283 EGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTE-LTELD-- 334
Query: 438 IGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLD 497
+ + T L +LS ++ S+GK L + T+P E + +SL+I +
Sbjct: 335 VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVS 391
Query: 498 LSQNQLNG---TLPSNFGILKNLGVLDVSENKLSGEIPN 533
G + G + + ++ LS + P
Sbjct: 392 PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 2e-20
Identities = 77/465 (16%), Positives = 139/465 (29%), Gaps = 78/465 (16%)
Query: 131 DNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSS 190
+F PD+ N S E+ L+ L +L H ++++ +
Sbjct: 7 QTQSFNDWFPDD-----NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTG 59
Query: 191 FGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEF 250
L+ L L ++N + LSQ + ++ NKL+ + + L+ L Y
Sbjct: 60 IEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLDVT--PLTKLTYLNC 113
Query: 251 PVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS 310
N+L S P L LN N T +S+ + L L +N
Sbjct: 114 DTNKLTKLDVSQN----PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI-TKLD 165
Query: 311 FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLST 370
+L + S N + ++++
Sbjct: 166 VTPQTQLTTLDCSFNKITE----------------------LDVSQN------------K 191
Query: 371 RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430
L L N + + L + L L N+ T I + L +L N
Sbjct: 192 LLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNP- 244
Query: 431 LGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLS 490
L E+ + L+ L TL + L I L LI + +V +
Sbjct: 245 LTELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNT 297
Query: 491 SLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNF 550
L LD + L L L ++ +L+ E+ + +L+ L
Sbjct: 298 QLY-LLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAH 350
Query: 551 FQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLS 595
Q + S + + N + + N ++
Sbjct: 351 IQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 2e-19
Identities = 69/453 (15%), Positives = 124/453 (27%), Gaps = 73/453 (16%)
Query: 125 LQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLS 184
+ L SL + + + L+ L L NN++
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77
Query: 185 GQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSS 244
+ ++L L+ +N+ + + L+
Sbjct: 78 -TLD--LSQNTNLTYLACDSNKLT-------------------------NLDVT--PLTK 107
Query: 245 LNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGF 304
L Y N+L S P L LN N T +S+ + L L +N
Sbjct: 108 LTYLNCDTNKLTKLDVSQ----NPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKK 160
Query: 305 SGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEA 364
+L + S N + + + +N L N + +++N
Sbjct: 161 I-TKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL-NCDTNNITKLDLNQN------- 211
Query: 365 VGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLG 424
+L L +N+L I + L L N T + + L KL L
Sbjct: 212 -----IQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLH 260
Query: 425 LQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPT 484
L EI + + T LI + + + L LL +T +
Sbjct: 261 CIQTD-LLEID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD- 313
Query: 485 EVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 544
+ L YL L+ +L L L L + + S+G L
Sbjct: 314 -LSQNPKLV-YLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNN 366
Query: 545 GMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSG 577
+ ++ + + G
Sbjct: 367 FEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 4e-19
Identities = 62/429 (14%), Positives = 121/429 (28%), Gaps = 73/429 (17%)
Query: 171 SKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNK 230
+ + S L++L L + + +L + + N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNN 75
Query: 231 LSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISN 290
++ + S ++L Y N+L +L L L LN N+ T
Sbjct: 76 IT-TLDLS--QNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLT--------- 119
Query: 291 ASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELL 350
+ L +++ + N L + + +L
Sbjct: 120 -------KLD----------VSQNPLLTYLNCARNTL-----------TEIDVSHNTQLT 151
Query: 351 GININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRI 410
++ + + V T+L L N++ + + L RL + N T ++
Sbjct: 152 ELDCHLNKKITKLDVTPQ-TQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNIT-KL 206
Query: 411 PGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLIL 470
+ +L L NK L EI + LT L N L + S L
Sbjct: 207 D--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTT 258
Query: 471 LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530
L +L I L+ + + + L +LD ++ E
Sbjct: 259 LHCIQTDLL------EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-E 311
Query: 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQ 590
+ L +L L +N + S +++L ++ L
Sbjct: 312 LD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALN 364
Query: 591 NLNLSFNHF 599
N +
Sbjct: 365 NNFEAEGQT 373
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 7e-09
Identities = 40/206 (19%), Positives = 64/206 (31%), Gaps = 41/206 (19%)
Query: 395 NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNML 454
N + + S L L L + + ++ I LT L L N +
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMTG-IEKLTGLTKLICTSNNI 76
Query: 455 EGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGIL 514
++ L + NL L +N LT + V L+ L+ YL+ N+L +
Sbjct: 77 T-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLT-YLNCDTNKLT---KLDVSQN 126
Query: 515 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNN 574
L L+ + N L+ EI S + LD N
Sbjct: 127 PLLTYLNCARNTLT-EID--------------------------VSHNTQLTELDCHLNK 159
Query: 575 LSGRIPKYFENFLFLQNLNLSFNHFE 600
++ L L+ SFN
Sbjct: 160 KITKLD--VTPQTQLTTLDCSFNKIT 183
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 5e-22
Identities = 49/267 (18%), Positives = 93/267 (34%), Gaps = 17/267 (6%)
Query: 345 SRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEG 403
++ L ++ N + + L+ L + +N + I +L +LE L L
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSY 109
Query: 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPS-S 461
N + L L L L GN + +S+ +LT L L I
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 462 LGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVL 520
L L + ++L + + + + ++S +L L Q L + ++ L
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVS-HLILHMKQHILLLEIFVDVTSSVECL 227
Query: 521 DVSENKLSG----EIP----NSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSR 572
++ + L E+ NSL + + + + + G+ L+ SR
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286
Query: 573 NNLSGRIPKYFENFLFLQNLNLSFNHF 599
N L F+ LQ + L N +
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 5e-19
Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 43/285 (15%)
Query: 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFG 312
N++ + + NL+ L L N TI + FS
Sbjct: 62 NRIT-YISNSDLQRCVNLQALVLTSNGIN----------------TIEEDSFSS------ 98
Query: 313 NLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRL 372
L L+ + +S N+L N L + S L L + N + + ++ + T+L
Sbjct: 99 -LGSLEHLDLSYNYLSN-----LS-SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 373 RILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFL 431
+ILRVGN F I L LE L ++ + P S+ + + L L +
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-H 210
Query: 432 GEIPSSI-GNLTLLITLSFDKNMLEG----SIPS----SLGKCQNLILLGLSNNNLTGTI 482
+ + + L L+ + + SL K + +++ +L +
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QV 269
Query: 483 PTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKL 527
+ +S L L+ S+NQL F L +L + + N
Sbjct: 270 MKLLNQISGLL-ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 6e-19
Identities = 66/354 (18%), Positives = 111/354 (31%), Gaps = 53/354 (14%)
Query: 79 ALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQ 138
++ SL + S + + + + S + IP + ++ L L NN
Sbjct: 11 LGVIISLSKEESSNQASLSCDRNGICKGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYI 67
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
++ CVNL++L L N + SL L L + YN LS S F LSSL
Sbjct: 68 SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127
Query: 199 VLSASANQFVGQIPKTL-SQLKRMRFIGFGVNKLSGEIPFSI-YNLSSLNYFEFPVNQLQ 256
L+ N + +L S L +++ + G +I L+ L E + LQ
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187
Query: 257 GSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHK 316
S ++ N+ L L Q +
Sbjct: 188 -SYEPKSLKSIQNVSHLILHMKQHI----------------LLLEI-------FVDVTSS 223
Query: 317 LQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILR 376
++ + + L EL N+ R ++
Sbjct: 224 VECLELRDTDLDT--------------FHFSELSTGETNSLIKKF---------TFRNVK 260
Query: 377 VGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430
+ + LF + L + L L NQ G L LQ++ L N +
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 33/228 (14%)
Query: 378 GNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSS 437
G++ +IPSGL ++ L L N+ T + LQ L L N + I
Sbjct: 38 GSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEED 94
Query: 438 IGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIYL 496
SF +L L LS N L+ + + LSSL+ +L
Sbjct: 95 ----------SFSSL-------------GSLEHLDLSYNYLS-NLSSSWFKPLSSLT-FL 129
Query: 497 DLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSGEIP-NSLGSCVRLEQLGMNGNFFQGN 554
+L N ++ F L L +L V +I LE+L ++ + Q
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189
Query: 555 IPSSFSSLRGIENLDLSRNNLSGRIPKY-FENFLFLQNLNLSFNHFEG 601
P S S++ + +L L + + + ++ L L +
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 6e-22
Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 9/234 (3%)
Query: 345 SRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEG 403
S L + NN + + +L L +L++G N + I G L +L L L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFD 132
Query: 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLS-FDKNMLEGSIPSS 461
N T G+ L KL+ L L+ N + IPS + L+ L + LE +
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 462 LGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLD 521
NL L L N+ +P + L L L++S N P +F L +L L
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLE-ELEMSGNHFPEIRPGSFHGLSSLKKLW 248
Query: 522 VSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNL 575
V +++S N+ L +L + N F+ LR + L L N
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 5e-21
Identities = 60/260 (23%), Positives = 93/260 (35%), Gaps = 37/260 (14%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425
+ + R L + N + I + R+L +LE L L N G+ L L L L
Sbjct: 72 GIPSNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130
Query: 426 QGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPT 484
N L IPS L+ L L N +E + + +L+ L L I
Sbjct: 131 FDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189
Query: 485 EV-IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 543
GL +L YL+L + +P+ L L L++S N EI
Sbjct: 190 GAFEGLFNLK-YLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIR----------- 234
Query: 544 LGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEV 603
P SF L ++ L + + +S F+ L LNL+ N+ +
Sbjct: 235 ------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281
Query: 604 PIKGVFSNSSA---VSLDGN 620
P +F+ + L N
Sbjct: 282 P-HDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 2e-17
Identities = 62/293 (21%), Positives = 100/293 (34%), Gaps = 62/293 (21%)
Query: 138 QIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSL 197
++P I N L L N + L L L + N++ +F L+SL
Sbjct: 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 198 EVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257
L N L+ + F LS L N ++
Sbjct: 126 NTLELFDNW--------LTVIPSGAF----------------EYLSKLRELWLRNNPIE- 160
Query: 258 SLPSDLGFTLPNLERLNLGE-NQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHK 316
S+PS +P+L RL+LGE + I F G L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLE----------------YISEGAFEG-------LFN 197
Query: 317 LQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILR 376
L+++++ M ++ + + +L LE L ++ N+F + P + L + L+ L
Sbjct: 198 LKYLNLGMCNIKD--------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLW 248
Query: 377 VGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428
V N+Q+ I L +L L L N + L L L L N
Sbjct: 249 VMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 7e-17
Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 14/229 (6%)
Query: 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-- 310
N +Q + +D L +LE L LG N + + + L L + N + +PS
Sbjct: 85 NNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGA 142
Query: 311 FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLST 370
F L KL+ + + N + + V SL+ RL+L + + A L
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLM---RLDLG--ELKKLEYISEGAFEGL-F 196
Query: 371 RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430
L+ L +G + ++P+ L LV LE L + GN F PGS L L++L + ++
Sbjct: 197 NLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ- 253
Query: 431 LGEIPS-SIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNL 478
+ I + L L+ L+ N L + L+ L L +N
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 1e-15
Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 8/187 (4%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
L+ L L+L +N IP YL +L+ LWL NN IP + +L L L
Sbjct: 121 GLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDL 178
Query: 155 G-FNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPK 213
G +L L L+ L + N+ +P + L LE L S N F P
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPG 236
Query: 214 TLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERL 273
+ L ++ + +++S + L+SL N L SLP DL L L L
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVEL 295
Query: 274 NLGENQF 280
+L N +
Sbjct: 296 HLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 3e-15
Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 9/229 (3%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNEL 159
R L+L N+ + +L L+ L L N+ QI + +L +L L N L
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWL 135
Query: 160 VGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLS-ASANQFVGQIPKTLSQL 218
LSKLR L + N + +F + SL L + L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195
Query: 219 KRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGEN 278
++++ G+ + ++P ++ L L E N + L +L++L + +
Sbjct: 196 FNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS 252
Query: 279 QFTGPIPASISNASHLMRLTIPINGFSGKVPS--FGNLHKLQWVSISMN 325
Q + + + L+ L + N S +P F L L + + N
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156
L L+ L+L + ++ + L L+ L + N F P + +L+ L +
Sbjct: 194 GLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208
+++ L+ L L + +NNLS F L L L N +
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 9e-22
Identities = 35/134 (26%), Positives = 46/134 (34%), Gaps = 28/134 (20%)
Query: 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR---------------- 738
+ D L LIG G +G+VYKG L+ VAVK
Sbjct: 4 AASEPSLDLDNLKLLELIGRGRYGAVYKGSLDERP----VAVKVFSFANRQNFINEKNIY 59
Query: 739 ---SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRL 795
+ H N+ + I V G LV E+ NGSL ++L
Sbjct: 60 RVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWV-----SSC 114
Query: 796 SIAVDVASALDYLH 809
+A V L YLH
Sbjct: 115 RLAHSVTRGLAYLH 128
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 1e-21
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 29/140 (20%)
Query: 689 ASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR---------- 738
+S + + +NL+ + L + G FG V+K L ++ VAVK
Sbjct: 9 SSGVDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEY----VAVKIFPIQDKQSWQ 64
Query: 739 ---------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNS 789
++H N+++ I + D L+ F GSL ++L
Sbjct: 65 NEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL-WLITAFHEKGSLSDFLKANV-----V 118
Query: 790 NLLQRLSIAVDVASALDYLH 809
+ + IA +A L YLH
Sbjct: 119 SWNELCHIAETMARGLAYLH 138
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 89.0 bits (220), Expect = 2e-18
Identities = 52/287 (18%), Positives = 105/287 (36%), Gaps = 30/287 (10%)
Query: 313 NLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRL 372
+ ++ + D N L + ++ +I + + + L +
Sbjct: 19 AFAETIKDNLKKKSV-----TDAVTQNELNSIDQIIANNSDIKSV-----QGIQYL-PNV 67
Query: 373 RILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLG 432
L + N+L +I L NL NL L L+ N+ + + DL KL+ L L+ N +
Sbjct: 68 TKLFLNGNKL-TDI-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNG-IS 122
Query: 433 EIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSL 492
+I + + +L L +L N + + + L + L L L +N ++ +++ L+ L
Sbjct: 123 DI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-----DIVPLAGL 174
Query: 493 S--IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNF 550
+ L LS+N + + LKNL VL++ + + N + V +
Sbjct: 175 TKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232
Query: 551 FQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597
P S E ++ + F + +
Sbjct: 233 LV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 6e-14
Identities = 51/318 (16%), Positives = 104/318 (32%), Gaps = 27/318 (8%)
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF--TLPNLER 272
++ + + L+S++ + + + LPN+ +
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI-----KSVQGIQYLPNVTK 69
Query: 273 LNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEK 332
L L N+ T P ++N +L L + N + S +L KL+ +S+ N +
Sbjct: 70 LFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNGI----- 121
Query: 333 DDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRN 392
D+ + L L L I + + L T+L L + +NQ+ +I L
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDI-----TVLSRL-TKLDTLSLEDNQI-SDI-VPLAG 173
Query: 393 LVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452
L L+ L L N + + + L L L L + L + + NL + T+
Sbjct: 174 LTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231
Query: 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFG 512
L S + T + ++ ++ L +
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291
Query: 513 ILKNLGVLDVSENKLSGE 530
+ ++ + +G
Sbjct: 292 VSYDVDGTVIKTKVEAGT 309
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 4e-13
Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 28/207 (13%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESLRL 154
+ +LK S + + Q L + + +N+ I I + N+ L L
Sbjct: 19 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFL 72
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
N+L P L +L L L + N + + SS +L L+ LS N + I
Sbjct: 73 NGNKLTDIKP--LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNG-ISDIN-G 126
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF--TLPNLER 272
L L ++ + G NK++ S L+ L+ NQ+ SD+ L L+
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI-----SDIVPLAGLTKLQN 179
Query: 273 LNLGENQFTGPIPASISNASHLMRLTI 299
L L +N + + + L L +
Sbjct: 180 LYLSKNHIS-----DLRALAGLKNLDV 201
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 1e-12
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 23/212 (10%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESL 152
L+ + + N+ ++ + Q I YL + L+L+ N ++ D +++ NL L
Sbjct: 39 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWL 92
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
L N++ L L KL++L++ +N +S I + +L LE L N+
Sbjct: 93 FLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKI--TDI 146
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF--TLPNL 270
LS+L ++ + N++S +P + L+ L N + SDL L NL
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI-----SDLRALAGLKNL 199
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIPIN 302
+ L L + SN +
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 7e-10
Identities = 45/304 (14%), Positives = 86/304 (28%), Gaps = 39/304 (12%)
Query: 460 SSLGKCQNLILLGLSNNNLTGTIP-TEVIGLSSLSIY------------------LDLSQ 500
I L ++T + E+ + + L L+
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 74
Query: 501 NQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFS 560
N+L LKNLG L + ENK+ ++ + L +L+ L + N +I +
Sbjct: 75 NKLTDI--KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DI-NGLV 128
Query: 561 SLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGN 620
L +E+L L N ++ L L+L N I + + +L +
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLS 183
Query: 621 DNLCGGIS---------ELHLSTCSIKESKQSRSRSLKLIIPIVTGILLVTGMSCLIITS 671
N + L L + + +L + + + +
Sbjct: 184 KNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243
Query: 672 WRSKSKRESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHE 731
K + P S + + KA F +V +
Sbjct: 244 DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKT 303
Query: 732 TLVA 735
+ A
Sbjct: 304 KVEA 307
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 8e-06
Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 10/156 (6%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLE 150
+ +L L L L NN + + L +L L L++N QI D ++ L+
Sbjct: 125 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQ 178
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
+L L N + R L L L L + + + NL + + V
Sbjct: 179 NLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLN 246
+ + + + + + E+ F Y ++
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 8e-05
Identities = 22/154 (14%), Positives = 55/154 (35%), Gaps = 17/154 (11%)
Query: 473 LSNNNLTGTIPTEVIGLSSLS--IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530
+ T ++ + + I +L + + T L ++ + + + +
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-S 57
Query: 531 IPNSLGSCVRLEQLGMNGNFFQGNIP--SSFSSLRGIENLDLSRNNLSGRIPKYFENFLF 588
+ + + +L +NGN + ++L+ + L L N + + ++
Sbjct: 58 VQG-IQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKK 110
Query: 589 LQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDN 622
L++L+L N I G+ SL +N
Sbjct: 111 LKSLSLEHNGISD---INGLVHLPQLESLYLGNN 141
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 39/159 (24%)
Query: 673 RSKSKRESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHET 732
E+ A+ + + + +L ++ IGAGSFG+V++ H +
Sbjct: 13 YDIPTTENLYFQGAMDGDDMDIPWCDLN-------IKEKIGAGSFGTVHRAEW----HGS 61
Query: 733 LVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFM 770
VAVK + +RH N+V + + Q + ++V E++
Sbjct: 62 DVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT----QPPNL-SIVTEYL 116
Query: 771 VNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
GSL LH K A + +RLS+A DVA ++YLH
Sbjct: 117 SRGSLYRLLH-KSGAREQLDERRRLSMAYDVAKGMNYLH 154
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 2e-17
Identities = 59/322 (18%), Positives = 92/322 (28%), Gaps = 36/322 (11%)
Query: 241 NLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIP-ASISNASHLMRLTI 299
N S G+ +L +LE L + I + L RLT+
Sbjct: 16 NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75
Query: 300 PINGFSGK----VPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININ 355
+ + LQ +++ + G + + + L L ++
Sbjct: 76 RAARIPSRILFGALRVLGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWA 134
Query: 356 NFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIP---- 411
L E L L++L + +R L L L N G
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194
Query: 412 GSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILL 471
LQ L L+ G + L L
Sbjct: 195 LCPLKFPTLQVLALRNAGM---------------------ETPSGVCSALAAARVQLQGL 233
Query: 472 GLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEI 531
LS+N+L S L+LS L +P G+ L VLD+S N+L
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLD-RN 289
Query: 532 PNSLGSCVRLEQLGMNGNFFQG 553
P S ++ L + GN F
Sbjct: 290 P-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 6e-17
Identities = 50/250 (20%), Positives = 79/250 (31%), Gaps = 23/250 (9%)
Query: 369 STRLRILRVGNNQLFGNIPSGLRNLVNLERLL---LEGNQFTGRIPGSIGDLH--KLQRL 423
S L+ L V ++ I G ++ + L LE + TG P + + L L
Sbjct: 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126
Query: 424 GLQGNKFLGE--IPSSIGNLTL--LITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT 479
L+ + + + L LS + + L L LS+N
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186
Query: 480 GTIP----TEVIGLSSLSIYLDLSQNQLN---GTLPSNFGILKNLGVLDVSENKLSGEIP 532
G + +L L L + G + L LD+S N L
Sbjct: 187 GERGLISALCPLKFPTLQ-VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 533 NSLGS-CVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQN 591
+L L ++ + + L LDLS N L R P + + N
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLD-RNPS-PDELPQVGN 300
Query: 592 LNLSFNHFEG 601
L+L N F
Sbjct: 301 LSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 46/269 (17%), Positives = 77/269 (28%), Gaps = 22/269 (8%)
Query: 80 LLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLF---RLQFLWLDNNTFG 136
L I L+ L ++ + I + LQ L L+N
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 137 GQIPDNISHCV--NLESLRLGFNELVGKVPRKLGSLS-----KLRTLAVHYNNLSGQIPS 189
G P + +L L L L L L+ L++ +
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167
Query: 190 SFGNLSSLEVLSASANQFVGQI-------PKTLSQLKRMRFIGFGVNKLSGEIPFSIYNL 242
+L L S N +G+ P L+ + G+ SG
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 243 SSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPIN 302
L + N L+ + + L LNL +P + + L L + N
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYN 284
Query: 303 GFSGKVPSFGNLHKLQWVSISMNHLGNGE 331
PS L ++ +S+ N + E
Sbjct: 285 RLDR-NPSPDELPQVGNLSLKGNPFLDSE 312
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 6e-12
Identities = 42/238 (17%), Positives = 74/238 (31%), Gaps = 26/238 (10%)
Query: 390 LRNLVNLERLLLEGNQFTGRIPGS-IGDLHKLQRLGLQGNKFLGEIPSS---IGNLTLLI 445
+LE LL + + I L+RL ++ + I + ++ L
Sbjct: 39 YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT----GTIPTEVIGLSSLSI-YLDLSQ 500
L+ + + G+ P L + L L+ N++ E+ + L ++Q
Sbjct: 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158
Query: 501 NQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFS 560
+ L LD+S+N GE C P F
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC-----------------PLKFP 201
Query: 561 SLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLD 618
+L+ + + SG + LQ L+LS N S SL+
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 5e-11
Identities = 50/340 (14%), Positives = 95/340 (27%), Gaps = 73/340 (21%)
Query: 96 GNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLG 155
G S +L + +I L+ L + +I
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGAL----------- 89
Query: 156 FNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNL--SSLEVLSASANQFVGQIPK 213
++ +S L+ L + ++G P L +L+ + +
Sbjct: 90 ----------RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-- 137
Query: 214 TLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQ-GSLPSDLGFTLPNLER 272
L+ + L L+ + Q + + P L
Sbjct: 138 ---------------AWLAELQQWLKPGLKVLS-----IAQAHSLNFSCEQVRVFPALST 177
Query: 273 LNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEK 332
L+L +N G + LQ +++ + E
Sbjct: 178 LDLSDNPELGERGLISA-------------------LCPLKFPTLQVLALRNAGM---ET 215
Query: 333 DDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRN 392
+L+ L ++ N+ + ++L L + L +P GL
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL-- 272
Query: 393 LVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLG 432
L L L N+ R P S +L ++ L L+GN FL
Sbjct: 273 PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 42/244 (17%), Positives = 62/244 (25%), Gaps = 57/244 (23%)
Query: 46 THDPLEVLSSWNYS-RHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVL 104
T L +L+ N S W + L + + L L
Sbjct: 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178
Query: 105 DLKNNSFRNEIPQEI----GYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELV 160
DL +N E LQ L L N G
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNA---------------------GMETPS 217
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIP-SSFGNLSSLEVLSASANQFVGQIPKTLSQLK 219
G + +L+ L + +N+L S S L L+ S ++L
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277
Query: 220 RMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQ 279
+ +LS N+L PS LP + L+L N
Sbjct: 278 VL-------------------DLSY--------NRLD-RNPSPDE--LPQVGNLSLKGNP 307
Query: 280 FTGP 283
F
Sbjct: 308 FLDS 311
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 9e-17
Identities = 55/266 (20%), Positives = 102/266 (38%), Gaps = 27/266 (10%)
Query: 334 DLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNL 393
+ +L NA ++ N+ + +L + L + I G++ L
Sbjct: 11 VIFPDPALANAIKIAAGKSNVTD-----TVTQADL-DGITTLSAFGTGV-TTI-EGVQYL 62
Query: 394 VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNM 453
NL L L+ NQ T + + +L K+ L L GN L + S+I L + TL
Sbjct: 63 NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTSTQ 118
Query: 454 LEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS--IYLDLSQNQLNGTLPSNF 511
+ + + L NL +L L N +T + L+ L+ YL + Q++ +
Sbjct: 119 I--TDVTPLAGLSNLQVLYLDLNQIT-----NISPLAGLTNLQYLSIGNAQVSDL--TPL 169
Query: 512 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLS 571
L L L +NK+S +I L S L ++ + N S ++ + + L+
Sbjct: 170 ANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLT 225
Query: 572 RNNLSGRIPKYFENFLFLQNLNLSFN 597
++ + Y N + +
Sbjct: 226 NQTITNQPVFYNNNLVVPNVVKGPSG 251
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 54/253 (21%), Positives = 100/253 (39%), Gaps = 22/253 (8%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
L + L+ T I + ++L+ L + N + + NL K+ + +S N
Sbjct: 40 LDGITTLSAFGTGVTT-IEG-VQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNP 96
Query: 327 LGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNI 386
L ++ + L + L+L I + + L + L++L + NQ+ NI
Sbjct: 97 L-----KNVSAIAGLQSIKTLDLTSTQITDV-----TPLAGL-SNLQVLYLDLNQI-TNI 144
Query: 387 PSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLIT 446
S L L NL+ L + Q + + + +L KL L NK + +I S + +L LI
Sbjct: 145 -SPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK-ISDI-SPLASLPNLIE 199
Query: 447 LSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGT 506
+ N + S L NL ++ L+N +T L ++ S +
Sbjct: 200 VHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257
Query: 507 LPSNFGILKNLGV 519
S+ G + +
Sbjct: 258 TISDNGTYASPNL 270
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 50/269 (18%), Positives = 103/269 (38%), Gaps = 29/269 (10%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESLRL 154
L+ + ++ + + Q L + L + + + NL L L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGT----GVTTIEGVQYLNNLIGLEL 70
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
N++ L +L+K+ L + N L S+ L S++ L ++ Q P
Sbjct: 71 KDNQI--TDLAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP-- 124
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF--TLPNLER 272
L+ L ++ + +N+++ P + L++L Y Q+ SDL L L
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQV-----SDLTPLANLSKLTT 177
Query: 273 LNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGN--- 329
L +N+ + P +++ +L+ + + N S V N L V+++ + N
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPV 234
Query: 330 GEKDDLEFVNSLVNASRLELLGININNFG 358
++L N + S + I++ G
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISDNG 263
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 21/213 (9%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLE 150
+ NL+ + L+L N +N I L ++ L L + QI D ++ NL+
Sbjct: 79 APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTST----QITDVTPLAGLSNLQ 132
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
L L N++ P L L+ L+ L++ +S + NLS L L A N+ +
Sbjct: 133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNK-ISD 187
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
I L+ L + + N++S P + N S+L + + F NL
Sbjct: 188 ISP-LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTIT----NQPVFYNNNL 240
Query: 271 ERLNLGENQFTGPI-PASISNASHLMRLTIPIN 302
N+ + PI PA+IS+ + N
Sbjct: 241 VVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 26/220 (11%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESL 152
I L ++ LDL + + P + L LQ L+LD N QI + ++ NL+ L
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN----QITNISPLAGLTNLQYL 156
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
+G ++ P L +LSKL TL N +S S +L +L + NQ P
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP 212
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLER 272
L+ + + ++ + F NL N V G+ + + +
Sbjct: 213 --LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV----VKGPSGAPIAPATIS----DN 262
Query: 273 LNLGENQFTGPIPASISNASHLMRLTIPING----FSGKV 308
T + + I+N S+ ++ FSG V
Sbjct: 263 GTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTV 302
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 19/212 (8%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLE 150
+ L+ L L+LK+N + P + L ++ L L N + + I+ +++
Sbjct: 57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN----PLKNVSAIAGLQSIK 110
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
+L L ++ P L LS L+ L + N ++ S L++L+ LS Q
Sbjct: 111 TLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL 166
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
P L+ L ++ + NK+S P + +L +L NQ+ P NL
Sbjct: 167 TP--LANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSPLA---NTSNL 219
Query: 271 ERLNLGENQFTGPIPASISNASHLMRLTIPIN 302
+ L T +N + P
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 11/139 (7%)
Query: 484 TEVIGLSSLS--IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 541
+ +L+ I + ++ + L + L ++ I + L
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNL 65
Query: 542 EQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601
L + N Q + +L I L+LS N L ++ L+L+
Sbjct: 66 IGLELKDN--QITDLAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITD 121
Query: 602 EVPIKGVFSNSSAVSLDGN 620
P+ G SN + LD N
Sbjct: 122 VTPLAG-LSNLQVLYLDLN 139
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 9e-17
Identities = 51/221 (23%), Positives = 82/221 (37%), Gaps = 17/221 (7%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLL 444
IP L + + L L N S +LQ L L + + I +L+ L
Sbjct: 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHL 78
Query: 445 ITLSFDKNMLEGSIPSSL-GKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQ 502
TL N ++ S+ +L L NL ++ I L +L L+++ N
Sbjct: 79 STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK-ELNVAHNL 135
Query: 503 LNGTLPSN--FGILKNLGVLDVSENKLSGEIPNSLGSCVRLE----QLGMNGNFFQGNIP 556
+ + F L NL LD+S NK+ L ++ L ++ N P
Sbjct: 136 IQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 557 SSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597
+F +R ++ L L N L F+ LQ + L N
Sbjct: 195 GAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 9e-13
Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 12/188 (6%)
Query: 345 SRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEG 403
L++L ++ + + + L L + N + ++ G L +L++L+
Sbjct: 52 PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVE 109
Query: 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLG-EIPSSIGNLTLLITLSFDKNMLEGSIP--- 459
IG L L+ L + N ++P NLT L L N ++ SI
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168
Query: 460 -SSLGKCQNLIL-LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNL 517
L + L L L LS N + I L L L NQL F L +L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK-ELALDTNQLKSVPDGIFDRLTSL 226
Query: 518 GVLDVSEN 525
+ + N
Sbjct: 227 QKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 13/190 (6%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
+ L+VLDL + I L L L L N + S +L+ L
Sbjct: 50 SFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVA 107
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNL-SGQIPSSFGNLSSLEVLSASANQFVGQIP- 212
L +G L L+ L V +N + S ++P F NL++LE L S+N+ I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166
Query: 213 ---KTLSQLKRMRF-IGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLP 268
+ L Q+ + + +N ++ I + L NQL+ S+P + L
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLT 224
Query: 269 NLERLNLGEN 278
+L+++ L N
Sbjct: 225 SLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 50/232 (21%), Positives = 75/232 (32%), Gaps = 34/232 (14%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNEL 159
+ LDL N R+ LQ L L I D +L +L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI 88
Query: 160 VGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLK 219
LS L+ L NL+ G+L +L+ L+ + N + K
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL--------IQSFK 140
Query: 220 RMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLE----RLNL 275
FS NL++L + + N++Q S+ L + L+L
Sbjct: 141 LP-----EY--------FS--NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184
Query: 276 GENQFTGPIPASISNASHLMRLTIPINGFSGKVPS--FGNLHKLQWVSISMN 325
N I L L + N VP F L LQ + + N
Sbjct: 185 SLNPMNF-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 90 SLSPHI-GNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQI-----PDNI 143
SL+ LS L+ L + + IG+L L+ L + +N I P+
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN----LIQSFKLPEYF 145
Query: 144 SHCVNLESLRLGFNELV---GKVPRKLGSLSKLR-TLAVHYNNLSGQIPSSFGNLSSLEV 199
S+ NLE L L N++ R L + L +L + N ++ P +F + L+
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKE 204
Query: 200 LSASANQ 206
L+ NQ
Sbjct: 205 LALDTNQ 211
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 43/239 (17%), Positives = 86/239 (35%), Gaps = 35/239 (14%)
Query: 364 AVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIP-GSIGDLHKLQ 421
+ +L + L++ L IPS NL N+ R+ + + ++ S +L K+
Sbjct: 25 RIPSLPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83
Query: 422 RLGLQGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIP--SSLGKCQNLILLGLSNNNL 478
+ ++ + L I L LL L L+ P + + +L +++N
Sbjct: 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPY 142
Query: 479 TGTIPTEVI-GLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 537
+IP GL + ++ L L N ++ L + +++NK I
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID----- 196
Query: 538 CVRLEQLGMNGNFFQGNIPSSFSSLR-GIENLDLSRNNLSGRIPKY-FENFLFLQNLNL 594
+F + G LD+S+ +++ +P E+ L N
Sbjct: 197 ------------------KDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 41/280 (14%), Positives = 75/280 (26%), Gaps = 81/280 (28%)
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232
+TL + +L +F NL ++ + S + + Q+
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-------------------- 72
Query: 233 GEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNAS 292
S YNLS + + E + + D LP L+ L +
Sbjct: 73 ---SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK----------- 118
Query: 293 HLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGI 352
P ++ +L I
Sbjct: 119 --------------MFPDLTKVYSTD---------------------------IFFILEI 137
Query: 353 NINNFGGMLPE-AVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIP 411
N + +P A L L++ NN ++ N L+ + L N++ I
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVID 196
Query: 412 GSI--GDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLS 448
G L + + +PS +L LI +
Sbjct: 197 KDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARN 235
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 13/152 (8%)
Query: 465 CQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN-FGILKNLGVLDVS 523
C ++ ++ IP L + L L + L T+PS+ F L N+ + VS
Sbjct: 10 CHQEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63
Query: 524 ENKLSGEIP-NSLGSCVRLEQLGMNGNFFQGNIPSS-FSSLRGIENLDLSRNNLSGRIPK 581
+ ++ +S + ++ + + I L ++ L + L P
Sbjct: 64 IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD 122
Query: 582 Y--FENFLFLQNLNLSFNHFEGEVPIKGVFSN 611
+ L ++ N + +P F
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIP-VNAFQG 153
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 33/192 (17%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
NL + + + + ++ L ++ + + N I + L+ L +
Sbjct: 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112
Query: 155 GFNELVGKVP--RKLGSLSKLRTLAVHYNNLSGQIPS-SFGNLSS-LEVLSASANQFVGQ 210
L P K+ S L + N IP +F L + L N F
Sbjct: 113 FNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF--- 168
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN- 269
+ +N + L+ N+ + D + +
Sbjct: 169 ----------------------TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206
Query: 270 LERLNLGENQFT 281
L++ + T
Sbjct: 207 PSLLDVSQTSVT 218
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-16
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 8/161 (4%)
Query: 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK 429
L + + N + ++ +G+ N++ L + T P I L L+RL + G
Sbjct: 44 NSLTYITLANINV-TDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKD 99
Query: 430 FLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGL 489
+ ++ LT L L + + SI + + + + LS N I + L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTL 158
Query: 490 SSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530
L L++ + ++ L L + G+
Sbjct: 159 PELK-SLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-15
Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 13/181 (7%)
Query: 325 NHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFG 384
LG ++ + + + + L IN+ + + ++ L + N
Sbjct: 28 GLLGQSSTANITEAQ-MNSLTYITLANINVTDL-----TGIEYA-HNIKDLTINNIHA-T 79
Query: 385 NIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLL 444
N + + L NLERL + G T ++ L L L + + I + I L +
Sbjct: 80 NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138
Query: 445 ITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLN 504
++ N I L L L + + + E L+ L +
Sbjct: 139 NSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLN-QLYAFSQTIG 194
Query: 505 G 505
G
Sbjct: 195 G 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-14
Identities = 30/193 (15%), Positives = 67/193 (34%), Gaps = 13/193 (6%)
Query: 385 NIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLL 444
NIP LL + + ++ L + L + ++ + I +
Sbjct: 16 NIP--DSTFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN-VTDL-TGIEYAHNI 68
Query: 445 ITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLN 504
L+ + + + NL L + ++T + GL+SL+ LD+S + +
Sbjct: 69 KDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT-LLDISHSAHD 125
Query: 505 GTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRG 564
++ + L + +D+S N +I L + L+ L + + +
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH-DY-RGIEDFPK 182
Query: 565 IENLDLSRNNLSG 577
+ L + G
Sbjct: 183 LNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 3e-13
Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 36/190 (18%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESL 152
++ L + L N + + I Y ++ L ++N + IS NLE L
Sbjct: 40 EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNI----HATNYNPISGLSNLERL 93
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
R+ ++ L L+ L L + ++ I + L + + S N + I
Sbjct: 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLER 272
L L ++ + + + + + P L +
Sbjct: 153 MPLKTLPELKSLNIQFDGVH--------DYRGIE-------------------DFPKLNQ 185
Query: 273 LNLGENQFTG 282
L G
Sbjct: 186 LYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-12
Identities = 25/161 (15%), Positives = 60/161 (37%), Gaps = 13/161 (8%)
Query: 440 NLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS--IYLD 497
+ ++ + + +L + L+N N+T ++ G+ L
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVT-----DLTGIEYAHNIKDLT 72
Query: 498 LSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPS 557
++ + L NL L + ++ + +L L L ++ + +I +
Sbjct: 73 INNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
Query: 558 SFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNH 598
++L + ++DLS N I + L++LN+ F+
Sbjct: 131 KINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG 170
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 24/186 (12%), Positives = 58/186 (31%), Gaps = 10/186 (5%)
Query: 171 SKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNK 230
S + S + ++SL ++ + V + + ++ +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIH 77
Query: 231 LSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISN 290
+ P S LS+L + +L L +L L++ + I I+
Sbjct: 78 ATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINT 134
Query: 291 ASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELL 350
+ + + NG + L +L+ ++I + + D + ++L
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV-----HDYRGIEDFPKLNQLYAF 189
Query: 351 GININN 356
I
Sbjct: 190 SQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESL 152
P++ L+ L +LD+ +++ + I +I L ++ + L N I + L+SL
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSL 164
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSG 185
+ F+ + + KL L + G
Sbjct: 165 NIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 30/122 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVK 747
+E ++G G+FG V K VA+K + H N+VK
Sbjct: 10 IEVEEVVGRGAFGVVCKAKWR----AKDVAIKQIESESERKAFIVELRQLSRVNHPNIVK 65
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDY 807
+ +C N LV E+ GSL LH E +S + + + Y
Sbjct: 66 LYGACL------NPV-CLVMEYAEGGSLYNVLH-GAEPLPYYTAAHAMSWCLQCSQGVAY 117
Query: 808 LH 809
LH
Sbjct: 118 LH 119
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 57/226 (25%), Positives = 85/226 (37%), Gaps = 42/226 (18%)
Query: 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFG 312
L +LP DL + L+L EN A++ + L +L + + K+ G
Sbjct: 20 RNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDG 74
Query: 313 NLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRL 372
L L + +S N L + LP L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-------------------------------LPLLGQTL-PAL 102
Query: 373 RILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFL 431
+L V N+L ++P G R L L+ L L+GN+ PG + KL++L L N L
Sbjct: 103 TVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-L 160
Query: 432 GEIPSSI-GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNN 476
E+P+ + L L TL +N L +IP L L N
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 8e-14
Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 12/197 (6%)
Query: 428 NKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI 487
+ L +P + L +N+L ++L L L L LT + +
Sbjct: 19 KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDG- 74
Query: 488 GLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMN 547
L L LDLS NQL +LP L L VLDVS N+L+ +L L++L +
Sbjct: 75 TLPVLG-TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 548 GNFFQGNIPSS-FSSLRGIENLDLSRNNLSGRIPK-YFENFLFLQNLNLSFNHFEGEVPI 605
GN + +P + +E L L+ NNL+ +P L L L N +P
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IP- 188
Query: 606 KGVFSNSSAVSLDGNDN 622
KG F + + N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 39/179 (21%), Positives = 61/179 (34%), Gaps = 7/179 (3%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELV 160
+L L N + RL L LD L +L L N+L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKR 220
+P +L L L V +N L+ + L L+ L N+ P L+ +
Sbjct: 91 -SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 221 MRFIGFGVNKLSGEIPFSIY-NLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGEN 278
+ + N L+ E+P + L +L+ N L ++P F L L N
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 41/232 (17%), Positives = 66/232 (28%), Gaps = 59/232 (25%)
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232
L + N L ++ + L L+ + + L + + N+L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 233 GEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNAS 292
+P L +L + N+L SLP L L+ L L N+ +P +
Sbjct: 91 -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGL---- 143
Query: 293 HLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGI 352
KL+ +S++ N+L
Sbjct: 144 ------------------LTPTPKLEKLSLANNNL------------------------- 160
Query: 353 NINNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGN 404
LP + N L L + N L IP G L L GN
Sbjct: 161 ------TELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQI---PDNI-SHCVN 148
G L L LDL +N ++ +P L L L + N ++ P
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN----RLTSLPLGALRGLGE 125
Query: 149 LESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
L+ L L NEL P L KL L++ NNL+ L +L+ L N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 473 LSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532
NLT +P L + L LS+N L + L L++ +L+ ++
Sbjct: 17 CDKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ 71
Query: 533 NSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNL 592
G+ L L ++ N Q ++P +L + LD+S N L+ LQ L
Sbjct: 72 -VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 593 NLSFNH 598
L N
Sbjct: 130 YLKGNE 135
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 4e-16
Identities = 48/263 (18%), Positives = 103/263 (39%), Gaps = 24/263 (9%)
Query: 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK 429
+ + L ++++++ + + G I L + +L L GNK
Sbjct: 24 AETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNK 79
Query: 430 FLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGL 489
L +I + NL L L D+N ++ + SSL + L L L +N ++ ++ GL
Sbjct: 80 -LTDI-KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-----DINGL 130
Query: 490 SSLS--IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMN 547
L L L N++ T + L L L + +N++S +I L +L+ L ++
Sbjct: 131 VHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLS 186
Query: 548 GNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKG 607
N + + + L+ ++ L+L + + N + + + V +
Sbjct: 187 KN--HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL---VTPEI 241
Query: 608 VFSNSSAVSLDGNDNLCGGISEL 630
+ + + +L +E+
Sbjct: 242 ISDDGDYEKPNVKWHLPEFTNEV 264
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 28/207 (13%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESLRL 154
+ +LK S + + Q L + + +N+ I I + N+ L L
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFL 75
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
N+L + L +L L L + N + + SS +L L+ LS N + I
Sbjct: 76 NGNKL--TDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNG-ISDIN-G 129
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF--TLPNLER 272
L L ++ + G NK++ S L+ L+ NQ+ SD+ L L+
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI-----SDIVPLAGLTKLQN 182
Query: 273 LNLGENQFTGPIPASISNASHLMRLTI 299
L L +N + + + L L +
Sbjct: 183 LYLSKNHIS-----DLRALAGLKNLDV 204
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 39/266 (14%), Positives = 84/266 (31%), Gaps = 47/266 (17%)
Query: 142 NISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLS 201
+ L + V L+ + + + +++ + L ++ L
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 74
Query: 202 ASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPS 261
+ N+ + I K L+ LK + ++ NK+ + +L
Sbjct: 75 LNGNK-LTDI-KPLANLKNLGWLFLDENKVK-----DLSSLKD----------------- 110
Query: 262 DLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVS 321
L L+ L+L N + + + L L + N + + L KL +S
Sbjct: 111 -----LKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLS 162
Query: 322 ISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQ 381
+ N + D+ + L L L +I++ A+ L L +L + + +
Sbjct: 163 LEDNQI-----SDIVPLAGLTKLQNLYLSKNHISDL-----RALAGL-KNLDVLELFSQE 211
Query: 382 LFGNIPSGLRNLVNLERLLLEGNQFT 407
+ NLV +
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 28/221 (12%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESL 152
+ NL L L L N ++ + L +L+ L L++N I D + H LESL
Sbjct: 86 LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHN----GISDINGLVHLPQLESL 139
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
LG N++ L L+KL TL++ N +S I L+ L+ L S N + +
Sbjct: 140 YLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNH-ISDL- 193
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFT-LPNLE 271
+ L+ LK + + + + NL N V GSL + + + E
Sbjct: 194 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN----TVKNTDGSLVTPEIISDDGDYE 249
Query: 272 RLNLGENQFTGPIPASISNASHLMRLTIPING----FSGKV 308
+ N+ + +P + S + + I F G+V
Sbjct: 250 KPNVKWH-----LPEFTNEVSFIFYQPVTIGKAKARFHGRV 285
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 27/157 (17%)
Query: 460 SSLGKCQNLILLGLSNNNLTGTIP-----------------TEVIGLSSLS--IYLDLSQ 500
S I L ++T + V G+ L L L+
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 77
Query: 501 NQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFS 560
N+L LKNLG L + ENK+ ++ + L +L+ L + N + +
Sbjct: 78 NKLTDI--KPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHN--GISDINGLV 131
Query: 561 SLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597
L +E+L L N ++ L L+L N
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN 166
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLE 150
+ +L L L L NN + + L +L L L++N QI D ++ L+
Sbjct: 128 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQ 181
Query: 151 SLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208
+L L N + R L L L L + + + NL + + V
Sbjct: 182 NLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 38/126 (30%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHR 743
LE +IG G FG VY+ VAVK ++H
Sbjct: 11 LEEIIGIGGFGKVYRAFWI----GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHP 66
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
N++ + C + + LV EF G L L K P ++ AV +A
Sbjct: 67 NIIALRGVC----LKEPNL-CLVMEFARGGPLNRVLSGKRIPPD-----ILVNWAVQIAR 116
Query: 804 ALDYLH 809
++YLH
Sbjct: 117 GMNYLH 122
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 5e-16
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 29/121 (23%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKI 748
L +G G +G V++G ++ VAVK +RH N++
Sbjct: 12 LLECVGKGRYGEVWRGSWQGEN----VAVKIFSSRDEKSWFRETELYNTVMLRHENILGF 67
Query: 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
I S + L+ + GSL ++L L I + +AS L +L
Sbjct: 68 IASDMTSRHSSTQL-WLITHYHEMGSLYDYLQLTTLDTV-----SCLRIVLSIASGLAHL 121
Query: 809 H 809
H
Sbjct: 122 H 122
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 7e-16
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 29/121 (23%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKI 748
L+ IG G FG V++G ++ VAVK +RH N++
Sbjct: 46 LQESIGKGRFGEVWRGKWRGEE----VAVKIFSSREERSWFREAEIYQTVMLRHENILGF 101
Query: 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
I + + LV ++ +GSL ++L+ + + +A+ AS L +L
Sbjct: 102 IAADNKDNGTWTQL-WLVSDYHEHGSLFDYLNRYT-----VTVEGMIKLALSTASGLAHL 155
Query: 809 H 809
H
Sbjct: 156 H 156
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 8e-16
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 25/127 (19%)
Query: 707 SLENLIGAGSFGSVYKGILN-HDDHETLVAVK----------------------RSIRHR 743
L ++G G FGSV +G L D VAVK + H
Sbjct: 37 ILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHP 96
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL--HPKPEAPRNSNLLQRLSIAVDV 801
N+++++ C + QG ++ FM G L +L P++ L L VD+
Sbjct: 97 NVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDI 156
Query: 802 ASALDYL 808
A ++YL
Sbjct: 157 ALGMEYL 163
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 9e-16
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 29/121 (23%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVKR-------------------SIRHRNLVKI 748
+ IG G +G V+ G + VAVK +RH N++
Sbjct: 41 MVKQIGKGRYGEVWMGKWRGEK----VAVKVFFTTEEASWFRETEIYQTVLMRHENILGF 96
Query: 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
I + L+ ++ NGSL ++L + L +A S L +L
Sbjct: 97 IAADIKGTGSWTQL-YLITDYHENGSLYDYLKSTT-----LDAKSMLKLAYSSVSGLCHL 150
Query: 809 H 809
H
Sbjct: 151 H 151
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 31/125 (24%)
Query: 707 SLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRN 744
+ + G ++KG +D + VK R H N
Sbjct: 13 NFLTKLNENHSGELWKGRWQGND----IVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPN 68
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
++ ++ +C S L+ +M GSL LH + Q + A+D+A
Sbjct: 69 VLPVLGACQS---PPAPHPTLITHWMPYGSLYNVLHEGT--NFVVDQSQAVKFALDMARG 123
Query: 805 LDYLH 809
+ +LH
Sbjct: 124 MAFLH 128
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 39/131 (29%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------------R 738
E IG G FG V+KG L D VA+K
Sbjct: 21 IEYEKQIGKGGFGLVHKGRLVKDKSV--VAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78
Query: 739 SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIA 798
++ H N+VK+ ++ +V EF+ G L L K +L +
Sbjct: 79 NLNHPNIVKLYGLM-------HNPPRMVMEFVPCGDLYHRLLDKAHPI---KWSVKLRLM 128
Query: 799 VDVASALDYLH 809
+D+A ++Y+
Sbjct: 129 LDIALGIEYMQ 139
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
IPS + + ++L L+ N+ + + L KL+ L L NK L +P+ I
Sbjct: 31 IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI------- 80
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQLN 504
F + +NL L +++N L +P V L +L+ L L +NQL
Sbjct: 81 ---FKEL-------------KNLETLWVTDNKLQ-ALPIGVFDQLVNLA-ELRLDRNQLK 122
Query: 505 GTLPSN-FGILKNLGVLDVSENKLSGEIPNSL-GSCVRLEQLGMNGNFFQGNIPSSFSSL 562
+LP F L L L + N+L +P + L++L + N + +F L
Sbjct: 123 -SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 563 RGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597
++ L L N L F++ L+ L L N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 58/223 (26%), Positives = 84/223 (37%), Gaps = 47/223 (21%)
Query: 235 IPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHL 294
IP L L N+L SLPS L L L L +N+ +PA I
Sbjct: 35 IPADTKKLD-LQS-----NKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGI------ 80
Query: 295 MRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLG---NGEKDDLEFVNSLVNASRLELLG 351
F L L+ + ++ N L G D L L L
Sbjct: 81 ----------------FKELKNLETLWVTDNKLQALPIGVFDQL---------VNLAELR 115
Query: 352 ININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRI 410
++ N LP V + T+L L +G N+L ++P G+ L +L+ L L NQ
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Query: 411 PGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKN 452
G+ L +L+ L L N+ L +P +L L L +N
Sbjct: 174 EGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 61/257 (23%), Positives = 88/257 (34%), Gaps = 81/257 (31%)
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232
+ L + N LS +F L+ L +L + N+ L L F
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--------LQTLPAGIFKE------- 83
Query: 233 GEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNAS 292
L +L N+LQ +LP + L NL L L NQ +P +
Sbjct: 84 ---------LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRV---- 128
Query: 293 HLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGI 352
F +L KL ++S+ N L +
Sbjct: 129 ------------------FDSLTKLTYLSLGYNELQS----------------------- 147
Query: 353 NINNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIP 411
LP+ V + T L+ LR+ NNQL +P G L L+ L L+ NQ
Sbjct: 148 --------LPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 412 GSIGDLHKLQRLGLQGN 428
G+ L KL+ L LQ N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 10/191 (5%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
IP NI + + L L N+L + L+KLR L ++ N L F L +LE
Sbjct: 31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 199 VLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIY-NLSSLNYFEFPVNQLQG 257
L + N+ QL + + N+L +P ++ +L+ L Y N+LQ
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ- 146
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASI-SNASHLMRLTIPINGFSGKVP--SFGNL 314
SLP + L +L+ L L NQ +P + L L + N +VP +F +L
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSL 204
Query: 315 HKLQWVSISMN 325
KL+ + + N
Sbjct: 205 EKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 15/185 (8%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHC-VNLESLRLGFNEL 159
+ LDL++N + + L +L+ L+L++N +P I NLE+L + N+L
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKL 97
Query: 160 VGKVPRKLGSLSKLRTLAVHYNNLSGQIPSS-FGNLSSLEVLSASANQFVGQIPKT---- 214
L L L + N L +P F +L+ L LS N+ +PK
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIY-NLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERL 273
L+ LK + N+L +P + L+ L + NQL+ +P +L L+ L
Sbjct: 156 LTSLKE---LRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML 210
Query: 274 NLGEN 278
L EN
Sbjct: 211 QLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
L L L + +N + +P + L L L LD N +P + L L L
Sbjct: 83 ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSL 140
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
G+NEL L+ L+ L ++ N L +F L+ L+ L NQ
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 5e-15
Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 11/223 (4%)
Query: 379 NNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI 438
IPS L N L + G+ L+++ + N L I + +
Sbjct: 17 QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74
Query: 439 -GNLTLLITLSFDK-NMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYL 496
NL L + +K N L P + NL L +SN + +P S + L
Sbjct: 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLL 133
Query: 497 DLSQNQLNGTLPSN--FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554
D+ N T+ N G+ +L +++N + EI NS + +L++L ++ N
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEE 192
Query: 555 IPS-SFSSLRGIENLDLSRNNLSGRIPKY-FENFLFLQNLNLS 595
+P+ F G LD+SR + +P Y EN L+ +
Sbjct: 193 LPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTY 234
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 43/281 (15%), Positives = 75/281 (26%), Gaps = 65/281 (23%)
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP----KTLSQLKRMRFIGFGV 228
L L +F LE + S N + I L +L +R
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI--EKA 89
Query: 229 NKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASI 288
N L P + NL +L Y ++ LP L++ +N +I
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDN-------INI 141
Query: 289 SNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLE 348
TI N F G + + ++ N +
Sbjct: 142 H--------TIERNSFV------GLSFESVILWLNKNGIQE------------------- 168
Query: 349 LLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFT 407
+ + N + + NN L +P+ L + +
Sbjct: 169 ------------IHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIH 215
Query: 408 GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLS 448
+ +L KL+ K L ++ L L+ S
Sbjct: 216 SLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEAS 252
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 7/193 (3%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
L +++ N I ++ L +L + ++ I + NL+ L +
Sbjct: 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPS-SFGNLSS-LEVLSASANQFVGQIP 212
+ + L + N I SF LS +L + N
Sbjct: 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSI-YNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLE 271
+ + N L E+P + + S + ++ SLPS L L
Sbjct: 172 SAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR 229
Query: 272 RLNLGENQFTGPI 284
+ + +
Sbjct: 230 ARSTYNLKKLPTL 242
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 6e-15
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 26/128 (20%)
Query: 707 SLENLIGAGSFGSVYKGILN-HDDHETLVAVK----------------------RSIRHR 743
+L ++G G FGSV + L D VAVK + H
Sbjct: 26 TLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHP 85
Query: 744 NLVKIITSCASVDFQGNDFKAL-VYEFMVNGSLEEWL--HPKPEAPRNSNLLQRLSIAVD 800
++ K++ +G + + FM +G L +L E P N L + VD
Sbjct: 86 HVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVD 145
Query: 801 VASALDYL 808
+A ++YL
Sbjct: 146 IACGMEYL 153
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 36/124 (29%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNL 745
+ IG+GSFG+VYKG + D VAVK R RH N+
Sbjct: 28 VGQRIGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 82
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
+ + + A+V ++ SL LH + + + IA A +
Sbjct: 83 LLFMGYSTAPQL------AIVTQWCEGSSLYHHLHAS---ETKFEMKKLIDIARQTARGM 133
Query: 806 DYLH 809
DYLH
Sbjct: 134 DYLH 137
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 35/124 (28%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNL 745
+ LIG G FG VY G + + VA++ R RH N+
Sbjct: 37 IGELIGKGRFGQVYHGRWHGE-----VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENV 91
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
V + +C S A++ +L + ++ + IA ++ +
Sbjct: 92 VLFMGACMS-----PPHLAIITSLCKGRTLYSVVRDAKIVL---DVNKTRQIAQEIVKGM 143
Query: 806 DYLH 809
YLH
Sbjct: 144 GYLH 147
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 30/122 (24%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVK 747
++G G FG K + +K R + H N++K
Sbjct: 14 HGEVLGKGCFGQAIKVTHRETGEV--MVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLK 71
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDY 807
I + + E++ G+L + ++ QR+S A D+AS + Y
Sbjct: 72 FIGVLY----KDKRL-NFITEYIKGGTLRGIIK-SMDSQY--PWSQRVSFAKDIASGMAY 123
Query: 808 LH 809
LH
Sbjct: 124 LH 125
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 7e-14
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 32/129 (24%)
Query: 707 SLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRH 742
+L +G G+FG VY+G ++ D VAVK H
Sbjct: 33 TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNH 92
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAV 799
+N+V+ I Q ++ E M G L+ +L P+P P + +L L +A
Sbjct: 93 QNIVRCIGVS----LQSLPR-FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 147
Query: 800 DVASALDYL 808
D+A YL
Sbjct: 148 DIACGCQYL 156
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 4e-13
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 32/129 (24%)
Query: 707 SLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRH 742
+L +G G+FG VY+G ++ D VAVK H
Sbjct: 74 TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNH 133
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAV 799
+N+V+ I Q ++ E M G L+ +L P+P P + +L L +A
Sbjct: 134 QNIVRCIGVS----LQSLPR-FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 188
Query: 800 DVASALDYL 808
D+A YL
Sbjct: 189 DIACGCQYL 197
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 6e-13
Identities = 42/167 (25%), Positives = 61/167 (36%), Gaps = 10/167 (5%)
Query: 345 SRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEG 403
S LL ++ NN + E T L L + +N L I S + NL L L
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS 97
Query: 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIP--- 459
N DL L+ L L N + + + ++ L L +N + P
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155
Query: 460 -SSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS-IYLDLSQNQLN 504
K L+LL LS+N L T++ L + L L N L
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 13/163 (7%)
Query: 420 LQRLGLQGNKFLGEIPSSI--GNLTLLITLSFDKNMLEGSIPS-SLGKCQNLILLGLSNN 476
L L N L + + LT L +L N L I S + NL L LS+N
Sbjct: 41 TALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98
Query: 477 NLTGTIPTEV-IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPN-- 533
+L T+ + L +L L L N + + F + L L +S+N++S P
Sbjct: 99 HLH-TLDEFLFSDLQALE-VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155
Query: 534 --SLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNN 574
+L L ++ N + + L L +N
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 50/209 (23%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRK-LGSLSKLRTLAVHYNNLSGQIPS-SFGNLSS 196
+P ++ L L N L L+ L +L + +N+L+ I S +F + +
Sbjct: 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN 89
Query: 197 LEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQ 256
L L S+N L L F +L +L N +
Sbjct: 90 LRYLDLSSNH--------LHTLDEFLF----------------SDLQALEVLLLYNNHIV 125
Query: 257 GSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHK 316
+ + + L++L L +NQ + P+ L K
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQIS----------------RFPVELIKD----GNKLPK 164
Query: 317 LQWVSISMNHLGNGEKDDLEFVNSLVNAS 345
L + +S N L DL+ + + V
Sbjct: 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 9/135 (6%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
L+ L L L +N I E + L++L L +N + + + S LE L L
Sbjct: 62 RLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL 119
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIP----SSFGNLSSLEVLSASANQFVGQ 210
N +V +++L+ L + N +S + P L L +L S+N+
Sbjct: 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 211 IPKTLSQLKRMRFIG 225
L +L G
Sbjct: 179 PLTDLQKLPAWVKNG 193
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 17/163 (10%)
Query: 253 NQLQGSLPSDLGFT-LPNLERLNLGENQFTGPIPASI-SNASHLMRLTIPINGFSGKVPS 310
N L L ++ T L NL L L N I + +L L + N +
Sbjct: 49 NNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLH-TLDE 105
Query: 311 --FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNL 368
F +L L+ + + NH+ ++ N+ + ++L+ L ++ N E + +
Sbjct: 106 FLFSDLQALEVLLLYNNHIVVVDR------NAFEDMAQLQKLYLSQNQISRFPVELIKDG 159
Query: 369 S--TRLRILRVGNNQLFGNIPSGLRNLVNL--ERLLLEGNQFT 407
+ +L +L + +N+L + L+ L L L N
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 28/122 (22%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV 746
++++ +G G +G VY+G+ + VAVK + I+H NLV
Sbjct: 15 ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLV 72
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
+++ C + F ++ EFM G+L ++L + + + + L +A ++SA++
Sbjct: 73 QLLGVC----TREPPF-YIITEFMTYGNLLDYL--RECNRQEVSAVVLLYMATQISSAME 125
Query: 807 YL 808
YL
Sbjct: 126 YL 127
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 8e-13
Identities = 43/206 (20%), Positives = 73/206 (35%), Gaps = 18/206 (8%)
Query: 388 SGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447
L N + L T + +L +Q + + + + + T L L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN-IQSL-AGMQFFTNLKEL 68
Query: 448 SFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSI-YLDLSQNQLNGT 506
N + + S L L L ++ N L + G+ S + L L N+L
Sbjct: 69 HLSHNQIS-DL-SPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNEL--R 119
Query: 507 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIE 566
+ LKNL +L + NKL I LG +LE L ++GN + + L+ +
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGN--EITNTGGLTRLKKVN 175
Query: 567 NLDLSRNNLSGRIPKYFENFLFLQNL 592
+DL+ KY +
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTV 201
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 40/233 (17%), Positives = 73/233 (31%), Gaps = 26/233 (11%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
L N + NLG+ T + S + + + L+ + +S N
Sbjct: 18 LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQ 74
Query: 327 LGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNI 386
+ DL + L L + + N + + L L + NN+L
Sbjct: 75 I-----SDLSPLKDLTKLEELSVNRNRLKNL-----NGIPSAC--LSRLFLDNNEL--RD 120
Query: 387 PSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLIT 446
L +L NLE L + N+ I +G L KL+ L L GN+ + + L +
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNW 176
Query: 447 LSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLS 499
+ + + + +S+ Y+D
Sbjct: 177 IDLTGQKCVNEPVKYQPELYITNTVKDPDGRW-----ISPYYISNGGSYVDGC 224
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 26/213 (12%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESL 152
LS ++ + N++ ++ + + L+ L L +N QI D + LE L
Sbjct: 37 QKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHN----QISDLSPLKDLTKLEEL 90
Query: 153 RLGFNELVGKVPRKLGSLS--KLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210
+ N L + L + L L + N L S +L +LE+LS N+
Sbjct: 91 SVNRNRL-----KNLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSI 143
Query: 211 IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL 270
+ L L ++ + N+++ + L +N+ + + ++ P L
Sbjct: 144 VM--LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCV----NEPVKYQPEL 195
Query: 271 ERLNLGENQFTGPI-PASISNASHLMRLTIPIN 302
N ++ I P ISN + +
Sbjct: 196 YITNTVKDPDGRWISPYYISNGGSYVDGCVLWE 228
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 24/191 (12%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESL 152
L+ +L S + + Q+ L +Q DN+ I + NL+ L
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNS----NIQSLAGMQFFTNLKEL 68
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
L N++ L L+KL L+V+ N L + + + L L N+ +
Sbjct: 69 HLSHNQI--SDLSPLKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNEL--RDT 121
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF--TLPNL 270
+L LK + + NKL I + LS L + N++ ++ G L +
Sbjct: 122 DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEI-----TNTGGLTRLKKV 174
Query: 271 ERLNLGENQFT 281
++L +
Sbjct: 175 NWIDLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 33/234 (14%), Positives = 70/234 (29%), Gaps = 70/234 (29%)
Query: 125 LQFLWLDNNTFGGQIPD--NISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNN 182
L + D + +++ + + + + + L+ L + +N
Sbjct: 21 AVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQ 74
Query: 183 LSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNL 242
+S + S +L+ LE LS + N+ + NL
Sbjct: 75 IS-DL-SPLKDLTKLEELSVNRNR--------------------------------LKNL 100
Query: 243 SSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPIN 302
+ + L RL L N+ + + +L L+I N
Sbjct: 101 NGIP--------------------SACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNN 138
Query: 303 GFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININN 356
+ G L KL+ + + N + + + L + ++L G N
Sbjct: 139 KLK-SIVMLGFLSKLEVLDLHGNEI-----TNTGGLTRLKKVNWIDLTGQKCVN 186
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 28/121 (23%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVK 747
L IG G FG V G VAVK +RH NLV+
Sbjct: 23 LKLLQTIGKGEFGDVMLGDYR----GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQ 78
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDY 807
++ + +V E+M GSL ++L + L ++DV A++Y
Sbjct: 79 LLGVI----VEEKGGLYIVTEYMAKGSLVDYL--RSRGRSVLGGDCLLKFSLDVCEAMEY 132
Query: 808 L 808
L
Sbjct: 133 L 133
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 29/124 (23%)
Query: 707 SLENLIGAGSFGSVYKGIL-NHDDHETLVAVK---------------------RSIRHRN 744
+IG G FG VY G L ++D + AVK + H N
Sbjct: 28 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 87
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
++ ++ C + +G+ +V +M +G L ++ N + + + VA
Sbjct: 88 VLSLLGIC--LRSEGSPL--VVLPYMKHGDLRNFIR---NETHNPTVKDLIGFGLQVAKG 140
Query: 805 LDYL 808
+ YL
Sbjct: 141 MKYL 144
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 31/125 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRN 744
L IG G+FG V+ G L D TLVAVK + H N
Sbjct: 116 LVLGEQIGRGNFGEVFSGRLRAD--NTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
+V++I C +V E + G +L + + L + D A+
Sbjct: 174 IVRLIGVCT-----QKQPIYIVMELVQGGDFLTFLRTEGARL---RVKTLLQMVGDAAAG 225
Query: 805 LDYLH 809
++YL
Sbjct: 226 MEYLE 230
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 28/124 (22%)
Query: 708 LENLIGAGSFGSVYKGILN--HDDHETLVAVK--------------------RSIRHRNL 745
+G G+FGSV + D+ +VAVK +S++H N+
Sbjct: 14 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 73
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
VK C S G L+ E++ GSL ++L + + ++ L + +
Sbjct: 74 VKYKGVCYS---AGRRNLKLIMEYLPYGSLRDYL---QKHKERIDHIKLLQYTSQICKGM 127
Query: 806 DYLH 809
+YL
Sbjct: 128 EYLG 131
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 33/127 (25%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETL-VAVK-----------------------RSIR 741
L +G GSFG V +G + +T+ VAVK S+
Sbjct: 20 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 79
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
HRNL+++ + + +V E GSL + L + + L AV V
Sbjct: 80 HRNLIRLYGVVLTPPMK------MVTELAPLGSLLDRLR---KHQGHFLLGTLSRYAVQV 130
Query: 802 ASALDYL 808
A + YL
Sbjct: 131 AEGMGYL 137
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 28/123 (22%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNL 745
L IG G FG V G VAVK +RH NL
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDYR----GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNL 248
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
V+++ + +V E+M GSL ++L + L ++DV A+
Sbjct: 249 VQLLGVI----VEEKGGLYIVTEYMAKGSLVDYL--RSRGRSVLGGDCLLKFSLDVCEAM 302
Query: 806 DYL 808
+YL
Sbjct: 303 EYL 305
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 29/123 (23%)
Query: 708 LENLIGAGSFGSVYKGIL-NHDDHETLVAVK---------------------RSIRHRNL 745
+ +IG G FG VY G + + A+K R + H N+
Sbjct: 25 SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNV 84
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
+ +I ++ +M +G L +++ RN + +S + VA +
Sbjct: 85 LALIGIM----LPPEGLPHVLLPYMCHGDLLQFIR---SPQRNPTVKDLISFGLQVARGM 137
Query: 806 DYL 808
+YL
Sbjct: 138 EYL 140
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 3e-12
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 28/123 (22%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV 746
++++ +G G +G VY+G+ + VAVK + I+H NLV
Sbjct: 222 ITMKHKLGGGQYGEVYEGVWK--KYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLV 279
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
+++ C + F ++ EFM G+L ++L + + + + L +A ++SA++
Sbjct: 280 QLLGVC----TREPPFY-IITEFMTYGNLLDYL--RECNRQEVSAVVLLYMATQISSAME 332
Query: 807 YLH 809
YL
Sbjct: 333 YLE 335
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 29/125 (23%)
Query: 708 LENLIGAGSFGSVYKGILN--HDDHETLVAVK---------------------RSIRHRN 744
+G G FG V + D+ VAVK R++ H N
Sbjct: 25 RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHEN 84
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
+VK C G + L+ EF+ +GSL+E+L P+ NL Q+L AV +
Sbjct: 85 IVKYKGICTE---DGGNGIKLIMEFLPSGSLKEYL---PKNKNKINLKQQLKYAVQICKG 138
Query: 805 LDYLH 809
+DYL
Sbjct: 139 MDYLG 143
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 30/122 (24%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLV 746
+ +G G+FGSV +G+ + VA+K + + +V
Sbjct: 14 ADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIV 73
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
++I C + LV E G L ++L + + V+ +
Sbjct: 74 RLIGVCQAEALM------LVMEMAGGGPLHKFLV---GKREEIPVSNVAELLHQVSMGMK 124
Query: 807 YL 808
YL
Sbjct: 125 YL 126
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 28/124 (22%)
Query: 708 LENLIGAGSFGSVYKGILN--HDDHETLVAVK--------------------RSIRHRNL 745
+G G+FGSV + D+ +VAVK +S++H N+
Sbjct: 45 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 104
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
VK C S G L+ E++ GSL ++L E + L L + +
Sbjct: 105 VKYKGVCYS---AGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKL---LQYTSQICKGM 158
Query: 806 DYLH 809
+YL
Sbjct: 159 EYLG 162
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 32/119 (26%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKII 749
+G+G+FG+V KG VAVK + + + +V++I
Sbjct: 25 LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 84
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
C + + LV E G L ++L R+ + + V+ + YL
Sbjct: 85 GICEAESWM------LVMEMAELGPLNKYLQ----QNRHVKDKNIIELVHQVSMGMKYL 133
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 4e-12
Identities = 49/352 (13%), Positives = 106/352 (30%), Gaps = 33/352 (9%)
Query: 240 YNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTI 299
+ S+ Y + + + + L++ ++ + L+ +
Sbjct: 224 NDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGT----LLLMVD 279
Query: 300 PINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGG 359
G ++ V + + + ++ +
Sbjct: 280 EAPLSVEWRTPDGR-NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRP 338
Query: 360 MLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHK 419
+L + + + S L + L+ L E I I +
Sbjct: 339 ECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRA 394
Query: 420 LQRLGLQGNKFLGEIPSSIGNLTLLITL-----SFDKNMLEGSIPSSLGKCQNLILLGLS 474
L L + E L + + ++ + ++ +L L+
Sbjct: 395 LDPL-----LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449
Query: 475 NNNLTGTIPTEVIGLSSLSI--YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532
+ +LT + L L + +LDLS N+L LP L+ L VL S+N L +
Sbjct: 450 HKDLT-----VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD 502
Query: 533 NSLGSCVRLEQLGMNGNFFQGNIPS--SFSSLRGIENLDLSRNNLSGRIPKY 582
+ + RL++L + N Q + S + L+L N+L +
Sbjct: 503 G-VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC-QEEGI 551
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 5e-11
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 11/140 (7%)
Query: 48 DPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLK 107
DP+ + + R + + V L L L L H+ L + LDL
Sbjct: 415 DPMR-AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VL-CHLEQLLLVTHLDLS 471
Query: 108 NNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIP--DNISHCVNLESLRLGFNELVG-KVP 164
+N R +P + L L+ L +N + D +++ L+ L L N L
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDN----ALENVDGVANLPRLQELLLCNNRLQQSAAI 526
Query: 165 RKLGSLSKLRTLAVHYNNLS 184
+ L S +L L + N+L
Sbjct: 527 QPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 4e-08
Identities = 44/246 (17%), Positives = 75/246 (30%), Gaps = 42/246 (17%)
Query: 380 NQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEI---PS 436
L R L + T + + +LQ L + L I
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR 393
Query: 437 SIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYL 496
++ L + L+ P +L L N++ + L
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD-------VRVL 446
Query: 497 DLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIP 556
L+ L T+ + L + LD+S N+L +P +L + LE L + N
Sbjct: 447 HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL----- 498
Query: 557 SSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSS--A 614
++ G+ NL LQ L L N + I+ + S
Sbjct: 499 ---ENVDGVANLPR------------------LQELLLCNNRLQQSAAIQPLVSCPRLVL 537
Query: 615 VSLDGN 620
++L GN
Sbjct: 538 LNLQGN 543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 3e-06
Identities = 36/182 (19%), Positives = 55/182 (30%), Gaps = 36/182 (19%)
Query: 106 LKNNSFRNEIPQEIGYLFRLQFLWLDN-----NTFGGQIPDNISHCVNLESLRLGFNELV 160
L + E Q L + + + F + ++ L L +L
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKR 220
V L L + L + +N L +P + L LEVL AS N
Sbjct: 455 --VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-------------- 497
Query: 221 MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF-TLPNLERLNLGENQ 279
+ + G + NL L N+LQ + + P L LNL N
Sbjct: 498 -------LENVDG-----VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNS 544
Query: 280 FT 281
Sbjct: 545 LC 546
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 33/128 (25%)
Query: 706 FSLENLIGAGSFGSVYKGILNH-----DDHETLVAVK--------------------RSI 740
+G G+F ++KG+ HET V +K +
Sbjct: 10 LIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL 69
Query: 741 RHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVD 800
H++LV C G++ LV EF+ GSL+ +L N+L +L +A
Sbjct: 70 SHKHLVLNYGVC----VCGDEN-ILVQEFVKFGSLDTYLKKNKNCI---NILWKLEVAKQ 121
Query: 801 VASALDYL 808
+A+A+ +L
Sbjct: 122 LAAAMHFL 129
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 29/124 (23%)
Query: 707 SLENLIGAGSFGSVYKGIL-NHDDHETLVAVK---------------------RSIRHRN 744
+IG G FG VY G L ++D + AVK + H N
Sbjct: 92 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 151
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
++ ++ C + +G+ +V +M +G L ++ N + + + VA
Sbjct: 152 VLSLLGIC--LRSEGSPL--VVLPYMKHGDLRNFIR---NETHNPTVKDLIGFGLQVAKG 204
Query: 805 LDYL 808
+ +L
Sbjct: 205 MKFL 208
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 5e-12
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 32/126 (25%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDD--HETLVAVK---------------------RSIRH 742
F ++G+G+FG+VYKG+ + + VA+K S+ +
Sbjct: 17 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 76
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
++ +++ C + Q L+ + M G L +++ E N L+ V +A
Sbjct: 77 PHVCRLLGICLTSTVQ------LITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIA 127
Query: 803 SALDYL 808
++YL
Sbjct: 128 KGMNYL 133
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 28/124 (22%)
Query: 708 LENLIGAGSFGSVYKGILN--HDDHETLVAVK--------------------RSIRHRNL 745
+ +G G+FGSV + D+ LVAVK +++ +
Sbjct: 27 YISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFI 86
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
VK G LV E++ +G L ++L S L L + + +
Sbjct: 87 VKYRGVSYG---PGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRL---LLYSSQICKGM 140
Query: 806 DYLH 809
+YL
Sbjct: 141 EYLG 144
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 9e-12
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 30/122 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV 746
+L +G+G FG V G + VAVK + H LV
Sbjct: 10 ITLLKELGSGQFGVVKLGKWK---GQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLV 66
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
K C + +V E++ NG L +L + Q L + DV +
Sbjct: 67 KFYGVC----SKEYPI-YIVTEYISNGCLLNYLR---SHGKGLEPSQLLEMCYDVCEGMA 118
Query: 807 YL 808
+L
Sbjct: 119 FL 120
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 9e-12
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 30/124 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ L +GAG FG V+ G N T VAVK + ++H+
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYN---GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR 69
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + ++ E+M NGSL ++L K + + + L +A +A
Sbjct: 70 LVRLYAVVT------QEPIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEG 121
Query: 805 LDYL 808
+ ++
Sbjct: 122 MAFI 125
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 35/131 (26%)
Query: 708 LENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHR 743
+ +G GSFG VY+G+ D+ ET VA+K +
Sbjct: 29 MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH 88
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL------HPKPEAPRNSNLLQRLSI 797
++V+++ QG ++ E M G L+ +L +L + + +
Sbjct: 89 HVVRLLGVV----SQGQPT-LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 143
Query: 798 AVDVASALDYL 808
A ++A + YL
Sbjct: 144 AGEIADGMAYL 154
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 1e-11
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 30/122 (24%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLV 746
+ +G G+FGSV +G+ + VA+K + + +V
Sbjct: 340 ADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIV 399
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
++I C + LV E G L ++L K E SN+ + + V+ +
Sbjct: 400 RLIGVCQAEALM------LVMEMAGGGPLHKFLVGKREEIPVSNVAE---LLHQVSMGMK 450
Query: 807 YL 808
YL
Sbjct: 451 YL 452
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 39/135 (28%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVKR-----------------SI-----RHRNL 745
+++IG G+FG V K + D A+KR + H N+
Sbjct: 29 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI 88
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL------------HPKPEAPRNSNLLQ 793
+ ++ +C L E+ +G+L ++L + Q
Sbjct: 89 INLLGAC----EHRGYL-YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 143
Query: 794 RLSIAVDVASALDYL 808
L A DVA +DYL
Sbjct: 144 LLHFAADVARGMDYL 158
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 33/130 (25%)
Query: 704 DGFSLENLIGAGSFGSVYKGILN--HDDHETLVAVK---------------------RSI 740
+G G FG V + +D +VAVK R++
Sbjct: 31 RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL 90
Query: 741 RHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNS-NLLQRLSIAV 799
H +++K C LV E++ GSL ++L PR+S L Q L A
Sbjct: 91 YHEHIIKYKGCCEDAGAAS---LQLVMEYVPLGSLRDYL------PRHSIGLAQLLLFAQ 141
Query: 800 DVASALDYLH 809
+ + YLH
Sbjct: 142 QICEGMAYLH 151
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 31/125 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILN-HDDHETLVAVK---------------------RSIRHR 743
L ++G G FG VY+G+ H + VAVK +++ H
Sbjct: 14 VVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHP 73
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
++VK+I ++ E G L +L + + L+ ++ +
Sbjct: 74 HIVKLIGIIEEEPTW------IIMELYPYGELGHYLERNKNSLKVLTLVL---YSLQICK 124
Query: 804 ALDYL 808
A+ YL
Sbjct: 125 AMAYL 129
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 30/127 (23%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDH-ETLVAVK---------------------RSIR 741
+E +IG+G G V G L + VA+K
Sbjct: 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFD 108
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
H N++++ +G +V E+M NGSL+ +L L+ + V
Sbjct: 109 HPNIIRLEGVV----TRGRLA-MIVTEYMENGSLDTFLRTHDGQFTIMQLVG---MLRGV 160
Query: 802 ASALDYL 808
+ + YL
Sbjct: 161 GAGMRYL 167
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 31/125 (24%)
Query: 706 FSLENLIGAGSFGSVYKGIL-NHDDHETLVAVK---------------------RSIRHR 743
L IG G FG V++GI + ++ VA+K R H
Sbjct: 17 IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHP 76
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
++VK+I ++ E G L +L + + ++L+ A +++
Sbjct: 77 HIVKLIGVITENPVW------IIMELCTLGELRSFLQVRKYSLDLASLIL---YAYQLST 127
Query: 804 ALDYL 808
AL YL
Sbjct: 128 ALAYL 132
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 30/124 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWN---GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 240
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 241 LVQLYAVVSEEPIY------IVTEYMSKGSLLDFL--KGETGKYLRLPQLVDMAAQIASG 292
Query: 805 LDYL 808
+ Y+
Sbjct: 293 MAYV 296
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 30/124 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ +G G FG V G + VA+K ++ H
Sbjct: 24 KDLTFLKELGTGQFGVVKYGKWR---GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK 80
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ C + ++ E+M NG L +L + LL+ + DV A
Sbjct: 81 LVQLYGVC----TKQRPI-FIITEYMANGCLLNYLREMRHRFQTQQLLE---MCKDVCEA 132
Query: 805 LDYL 808
++YL
Sbjct: 133 MEYL 136
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 30/122 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV 746
+ IG+G FG V+ G ++ VA+K + H LV
Sbjct: 10 LTFVQEIGSGQFGLVHLGYWL---NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLV 66
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
++ C + LV EFM +G L ++L + LL + +DV +
Sbjct: 67 QLYGVC----LEQAPI-CLVTEFMEHGCLSDYLRTQRGLFAAETLLG---MCLDVCEGMA 118
Query: 807 YL 808
YL
Sbjct: 119 YL 120
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 31/126 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDD--HETLVAVK---------------------RSIRH 742
+ + +IGAG FG VYKG+L E VA+K H
Sbjct: 46 VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH 105
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
N++++ + ++ E+M NG+L+++L K L+ + +A
Sbjct: 106 HNIIRLEGVI----SKYKPM-MIITEYMENGALDKFLREKDGEFSVLQLVG---MLRGIA 157
Query: 803 SALDYL 808
+ + YL
Sbjct: 158 AGMKYL 163
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 32/126 (25%)
Query: 706 FSLENLIGAGSFGSVYKGILN--HDDHETLVAVK---------------------RSIRH 742
++G+G FG+V+KG+ + + V +K S+ H
Sbjct: 15 LRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDH 74
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
++V+++ C Q LV +++ GSL + + A L L+ V +A
Sbjct: 75 AHIVRLLGLCPGSSLQ------LVTQYLPLGSLLDHVRQHRGALGPQLL---LNWGVQIA 125
Query: 803 SALDYL 808
+ YL
Sbjct: 126 KGMYYL 131
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 32/126 (25%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDD--HETLVAVK---------------------RSIRH 742
F ++G+G+FG+VYKG+ + + VA+K S+ +
Sbjct: 17 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 76
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
++ +++ C + Q L+ + M G L +++ + + L L+ V +A
Sbjct: 77 PHVCRLLGICLTSTVQ------LITQLMPFGCLLDYVREHKDNIGSQYL---LNWCVQIA 127
Query: 803 SALDYL 808
++YL
Sbjct: 128 KGMNYL 133
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 30/124 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +GAG FG V+ N T VAVK ++++H
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYN---KHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDK 244
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LVK+ ++ EFM GSL ++L K + L + + + +A
Sbjct: 245 LVKLHAVVTKEPIY------IITEFMAKGSLLDFL--KSDEGSKQPLPKLIDFSAQIAEG 296
Query: 805 LDYL 808
+ ++
Sbjct: 297 MAFI 300
|
| >3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 7e-11
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 41/138 (29%)
Query: 707 SLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRH 742
+G FG VYKG L + VA+K ++H
Sbjct: 12 RFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQH 71
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL------------HPKPEAPRNSN 790
N+V ++ + ++++ + +G L E+L
Sbjct: 72 PNVVCLLGVV----TKDQPL-SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALE 126
Query: 791 LLQRLSIAVDVASALDYL 808
+ + +A+ ++YL
Sbjct: 127 PPDFVHLVAQIAAGMEYL 144
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 30/127 (23%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIR 741
S++ ++GAG FG V G L E VA+K
Sbjct: 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 104
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
H N++++ + +V E+M NGSL+ +L + ++Q + + +
Sbjct: 105 HPNIIRLEGVVTK-----SKPVMIVTEYMENGSLDSFLR---KHDAQFTVIQLVGMLRGI 156
Query: 802 ASALDYL 808
AS + YL
Sbjct: 157 ASGMKYL 163
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 8e-11
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 31/124 (25%)
Query: 707 SLENLIGAGSFGSVYKGIL-NHDDHETLVAVK---------------------RSIRHRN 744
L IG G FG V++GI + ++ VA+K R H +
Sbjct: 393 ELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH 452
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
+VK+I ++ E G L +L + + ++L+ A +++A
Sbjct: 453 IVKLIGVITENPVW------IIMELCTLGELRSFLQVRKFSLDLASLIL---YAYQLSTA 503
Query: 805 LDYL 808
L YL
Sbjct: 504 LAYL 507
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 30/124 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWN---GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 323
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 324 LVQLYAVVSEEPIY------IVTEYMSKGSLLDFL--KGETGKYLRLPQLVDMAAQIASG 375
Query: 805 LDYL 808
+ Y+
Sbjct: 376 MAYV 379
|
| >3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 9e-11
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 40/137 (29%)
Query: 707 SLENLIGAGSFGSVYKGILNH---DDHETLVAVK--------------------RSIRHR 743
L+ +G G+FG V+ + + LVAVK +++H
Sbjct: 18 VLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHE 77
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL------------HPKPEAPRNSNL 791
++VK C G+ +V+E+M +G L ++L +A L
Sbjct: 78 HIVKFYGVC----GDGDPL-IMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGL 132
Query: 792 LQRLSIAVDVASALDYL 808
Q L IA +AS + YL
Sbjct: 133 SQMLHIASQIASGMVYL 149
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 1e-10
Identities = 94/604 (15%), Positives = 186/604 (30%), Gaps = 160/604 (26%)
Query: 86 LLQGSLSPHIGNLSFLRVLDLKNNSFRNE-------IPQEIGYLFRLQFLWLDNNTFGGQ 138
+L + N V D+ + E + RL + L
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK------ 74
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSF--GNLSS 196
+ + E LR+ + L+ + + S + + + + F N+S
Sbjct: 75 -QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 197 LEVLSASANQFVGQIPKTLSQLKRMRFI------GFGVNK--LSGEI----------PFS 238
L+ ++ + L +L+ + + G G K ++ ++ F
Sbjct: 134 LQPYL--------KLRQALLELRPAKNVLIDGVLGSG--KTWVALDVCLSYKVQCKMDFK 183
Query: 239 IY--NLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMR 296
I+ NL + N E + LQ L + PN + + I + + L++
Sbjct: 184 IFWLNLKNCNSPETVLEMLQ-KLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 297 -------LTI--------PINGFSGK-----------VPSFGNLHKLQWVSISMNHLGNG 330
L + N F+ V F L IS++H
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDHHSMT 297
Query: 331 -EKDDLEFVNSLVNASRLELLGININNFGGMLP-EAVGNLSTRLRILRVGNNQLFGNIPS 388
D++ LL ++ LP E + N + I
Sbjct: 298 LTPDEV-----------KSLLLKYLDCRPQDLPREVLT-----------TNPRRLSIIAE 335
Query: 389 GLRNLVN-LERLL-LEGNQFTGRIPGSIGDL------HKLQRLGLQGNKFLGE--IPSSI 438
+R+ + + + ++ T I S+ L RL + F IP+ +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTIL 391
Query: 439 GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDL 498
L+L+ ++++ + + K L+ T +IP SIYL+L
Sbjct: 392 --LSLIWF-----DVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---------SIYLEL 435
Query: 499 SQN-----QLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLG----SCVRLEQLGM--- 546
L+ ++ ++ I K D+ L + +G + E++ +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 547 ---NGNFFQGNI-------PSSFSSLRGIENLDLSRNNLSGRIPKY------FENFLFLQ 590
+ F + I +S S L ++ L + + PKY +FL
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 591 NLNL 594
NL
Sbjct: 556 EENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-05
Identities = 90/596 (15%), Positives = 181/596 (30%), Gaps = 169/596 (28%)
Query: 17 FSFSLQSTDY---MHK-SNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSP 72
F + +Y M E Q +++ D L +N ++ F ++ V
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-----YNDNQVFAKYN-V---S 132
Query: 73 RHQRVTAL---LL-----PSLLLQG-------SLSPHIGNLSFLRVLDLKNN-----SFR 112
R Q L LL ++L+ G ++ + +V + + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLK 190
Query: 113 N-EIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLS 171
N P+ + L LQ L + D+ S +++L + + ++ R L S
Sbjct: 191 NCNSPETV--LEMLQKLLYQIDPNWTSRSDHSS------NIKLRIHSIQAELRRLLKSKP 242
Query: 172 KLRTLAVHYNNL----SGQIPSSFG----------NLSSLEVLSASANQFVGQIPK---- 213
L V L + + ++F + LSA+ +
Sbjct: 243 YENCLLV----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 214 TLSQLKRM--RFIGFGVNKLSGEI----PFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTL 267
T ++K + +++ L E+ P + + D T
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--------------SIIAESIRDGLATW 344
Query: 268 PNLERLNLGENQFTGPIPASISN-ASHLMR-----LTIPINGF--SGKVPSFGNLHKLQW 319
N + +N ++ T I +S++ R L++ F S +P+ L + W
Sbjct: 345 DNWKHVNC--DKLTTIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIPT-ILLSLI-W 396
Query: 320 VSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGN 379
+ + D + VN L S L+ +P ++ L++
Sbjct: 397 FDVI-------KSDVMVVVNKLHKYS---LVEKQPKESTISIP----SIYLELKVK---- 438
Query: 380 NQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQG--NKFLG---EI 434
L N L R +++ + IP + D L L +G +
Sbjct: 439 ----------LENEYALHRSIVD--HY--NIPKTF-DSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 435 PSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSI 494
+TL + D LE Q + + N + T L L
Sbjct: 484 IEHPERMTLFRMVFLDFRFLE----------QKIRHDSTAWNASGSILNT----LQQLKF 529
Query: 495 YLD-LSQNQLNGTLPSNFGILKNLG--VLDVSENKLSGEIPNSLGSCVRLEQLGMN 547
Y + N P ++ + + + EN + + L ++ +
Sbjct: 530 YKPYICDND-----PKYERLVNAILDFLPKIEENLICSK-------YTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 61/430 (14%), Positives = 121/430 (28%), Gaps = 114/430 (26%)
Query: 400 LLEGNQFTGRIPGSIGDLHKLQRLGLQGN--KFLGEIPSSIGNLTLLITLSFDKNMLEGS 457
L+ + R P + ++ QR L + F ++ L + L + L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKL---RQALL-- 145
Query: 458 IPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSL--SIYLDLSQNQLNGTLPSNFGIL- 514
L +N+++ G+ G G + + + L +F I
Sbjct: 146 ---ELRPAKNVLIDGV-----LG------SGKTWVALDVCLSYKVQCKM-----DFKIFW 186
Query: 515 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNN 574
NL + E L E+ L +++ + + NI S++ R
Sbjct: 187 LNLKNCNSPETVL--EMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQ-----AELRRL 237
Query: 575 LSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHLST 634
L + Y L L N+ + + F+ S + L T
Sbjct: 238 LKSK--PYENCLLVLLNVQ-NAKAWN-------AFNLSCKI----------------LLT 271
Query: 635 CSIKESKQSRSRSLKLIIPIVTGILLVTGMSCLIITSWRSK-SKRESATPPSALLASVLR 693
+R + VT L + + + + E +LL L
Sbjct: 272 --------TRFKQ-------VTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYLD 312
Query: 694 VSYQNL-FKATDGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVKRSIRHRNLVKIITS 751
Q+L + ++I D T K + L II S
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAE----------SIRDGLATWDNWKH-VNCDKLTTIIES 361
Query: 752 CASVDFQGNDFKALVYE----FMVNGSLEE------WLHPKPEAPRNS-NLLQRLSIAV- 799
+V + +++ + ++ F + + W N L + S+
Sbjct: 362 SLNV-LEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 800 DVASALDYLH 809
+ +
Sbjct: 420 QPKESTISIP 429
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 39/136 (28%)
Query: 707 SLENLIGAGSFGSVYKGILNH---DDHETLVAVK--------------------RSIRHR 743
L+ +G G+FG V+ ++ + + LVAVK ++H+
Sbjct: 44 VLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQ 103
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL-----------HPKPEAPRNSNLL 792
++V+ C +G +V+E+M +G L +L + AP L
Sbjct: 104 HIVRFFGVC----TEGRPL-LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLG 158
Query: 793 QRLSIAVDVASALDYL 808
Q L++A VA+ + YL
Sbjct: 159 QLLAVASQVAAGMVYL 174
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 3/131 (2%)
Query: 471 LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSG 529
+ L N + P L +DLS NQ++ L + F L++L L + NK++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLR-RIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 530 EIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFL 589
+ L+ L +N N +F L + L L N L F +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 590 QNLNLSFNHFE 600
Q ++L+ N F
Sbjct: 155 QTMHLAQNPFI 165
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 9/142 (6%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425
NL + +R+ N + IP G L R+ L NQ + P + L L L L
Sbjct: 29 NLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Query: 426 QGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPS-SLGKCQNLILLGLSNNNLTGTIP 483
GNK + E+P S+ L L L + N + + + NL LL L +N L TI
Sbjct: 88 YGNK-ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144
Query: 484 TEVI-GLSSLSIYLDLSQNQLN 504
L ++ + L+QN
Sbjct: 145 KGTFSPLRAIQ-TMHLAQNPFI 165
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 7e-10
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 29/165 (17%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
IP+ L + + LE N PG+ KL+R+ L N+ + E+
Sbjct: 26 IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDA------- 75
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQLN 504
F ++L L L N +T +P + GL SL L L+ N++N
Sbjct: 76 ---FQG-------------LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ-LLLLNANKIN 117
Query: 505 GTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGN 549
F L NL +L + +NKL + ++ + + N
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Query: 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNELV 160
+ L+ N+ + P +L+ + L NN ++ + +L SL L N++
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKR 220
L L+ L ++ N ++ +F +L +L +LS N+ T S L+
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 221 MRFI 224
++ +
Sbjct: 154 IQTM 157
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 361 LPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGDLHK 419
L L L + N++ +P L L +L+ LLL N+ + DLH
Sbjct: 71 LAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 420 LQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452
L L L NK + L + T+ +N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
LR +DL NN E+ + L L L L N ++P ++ +L+ L L
Sbjct: 54 PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111
Query: 155 GFNELVGKVPRKL-GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
N++ + L L L+++ N L +F L +++ + + N F
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 31/179 (17%), Positives = 50/179 (27%), Gaps = 57/179 (31%)
Query: 229 NKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASI 288
N + P + L + NQ+ L D L +L L L N+ T +P S+
Sbjct: 42 NTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE-LPKSL 99
Query: 289 SNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLE 348
F L LQ + ++ N +
Sbjct: 100 ----------------------FEGLFSLQLLLLNANKINC------------------- 118
Query: 349 LLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQF 406
L L +L + +N+L I G L ++ + L N F
Sbjct: 119 ------------LRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 36/150 (24%), Positives = 52/150 (34%), Gaps = 31/150 (20%)
Query: 474 SNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPN 533
LT IPT L + L QN + P F K L +D+S N++S E+
Sbjct: 19 RGKGLT-EIPT---NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELA- 72
Query: 534 SLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLN 593
P +F LR + +L L N ++ FE LQ L
Sbjct: 73 ----------------------PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110
Query: 594 LSFNHFEGEVPIKGVFSN-SSAVSLDGNDN 622
L+ N + F + + L DN
Sbjct: 111 LNANKIN-CLR-VDAFQDLHNLNLLSLYDN 138
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 9e-10
Identities = 85/503 (16%), Positives = 154/503 (30%), Gaps = 120/503 (23%)
Query: 101 LRVLDLKNNSFRNEIPQEIG-YLFRLQFLWLDNNTFGGQ----IPDNISHCVNLESLRLG 155
++ LD++ + E+ L + Q + LD+ I + L L L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 156 FNELVGKVPRKLGSL-----SKLRTLAVHYNNLSGQ----IPSSFGNLSSLEVLSASANQ 206
NEL + K++ L++ L+G + S+ L +L+ L S N
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFT 266
+ L + L + L + L
Sbjct: 125 LGDAGLQLLCEGLL-------------------DPQCRLEKLQLEYCSLSAASCEPLASV 165
Query: 267 L---PNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSIS 323
L P+ + L + N + + +L+ + +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLK------------------DSPCQLEALKLE 207
Query: 324 MNHLGNGEKDDLEFVNSLVNASRLELLGININNFGG----MLPEAVGNLSTRLRILRVGN 379
+ + + + + + L L + N G L + + S+RLR L +
Sbjct: 208 SCGV--TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265
Query: 380 NQL----FGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIP 435
+ G++ LR +L+ L L GN+ +GD +G + L E
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNE--------LGD---------EGARLLCETL 308
Query: 436 SSIGNLTLLITLSFDKNMLEG----SIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSS 491
L +L S L + + L+ L +SNN L G+
Sbjct: 309 LE--PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA------GVRE 360
Query: 492 LS----------IYLDLSQNQLNGT--------LPSNFGILKNLGVLDVSENKLSGEIPN 533
L L L+ ++ + L +N +L LD+S N L
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN----HSLRELDLSNNCLGDAGIL 416
Query: 534 SLGSCVR-----LEQLGMNGNFF 551
L VR LEQL + ++
Sbjct: 417 QLVESVRQPGCLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 73/452 (16%), Positives = 139/452 (30%), Gaps = 95/452 (21%)
Query: 243 SSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFT----GPIPASISNASHLMRLT 298
+ + +L + ++L L + + L + T I +++ L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 299 IPINGFSG----------KVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLE 348
+ N + PS K+Q +S+ L ++L L+
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSC----KIQKLSLQNCCL--TGAGCGVLSSTLRTLPTLQ 116
Query: 349 LLGININNFGG----MLPEAVGNLSTRLRILRVGNNQL----FGNIPSGLRNLVNLERLL 400
L ++ N G +L E + + RL L++ L + S LR + + L
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176
Query: 401 LEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLE----G 456
+ N + G + L + + L L + +
Sbjct: 177 VSNND-----------------INEAGVRVLCQGLKD--SPCQLEALKLESCGVTSDNCR 217
Query: 457 SIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS----------IYLDLSQNQLN-- 504
+ + +L L L +N L G++ L L + + +
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDV------GMAELCPGLLHPSSRLRTLWIWECGITAK 271
Query: 505 --GTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR-----LEQLGMNGNFFQG---- 553
G L ++L L ++ N+L E L + LE L + F
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331
Query: 554 NIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLF-----LQNLNLSFNHFEGEVPIKGV 608
+ S + R + L +S N L + L L+ L L+
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS----SC 387
Query: 609 FSNSSAVSLDGNDNLCGGISELHLSTCSIKES 640
S ++ L N +L EL LS + ++
Sbjct: 388 SSLAAT--LLANHSL----RELDLSNNCLGDA 413
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 72/423 (17%), Positives = 123/423 (29%), Gaps = 91/423 (21%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFR-----LQFLWLDNNTFGGQ----IP 140
+S + L L+L++N + + + +Q L L N G +
Sbjct: 47 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106
Query: 141 DNISHCVNLESLRLGFNELVGKVPRKLGSL-----SKLRTLAVHYNNLSGQ----IPSSF 191
+ L+ L L N L + L +L L + Y +LS + S
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166
Query: 192 GNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251
+ L+ S N GV L + S L +L
Sbjct: 167 RAKPDFKELTVSNNDINEA----------------GVRVLCQGLKDSPCQLEALK---LE 207
Query: 252 VNQLQGSLPSDLGFTL---PNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKV 308
+ DL + +L L LG N+ + L + +
Sbjct: 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGD------VGMAELCPGLLHPS------ 255
Query: 309 PSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGG----MLPEA 364
+L+ + I + DL L L+ L + N G +L E
Sbjct: 256 ------SRLRTLWIWECGITAKGCGDL--CRVLRAKESLKELSLAGNELGDEGARLLCET 307
Query: 365 VGNLSTRLRILRVGNNQL----FGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKL 420
+ +L L V + + S L L L + N+ + D
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR--------LED---- 355
Query: 421 QRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNML--EG--SIPSSLGKCQNLILLGLSNN 476
G + L + ++L L + S+ ++L +L L LSNN
Sbjct: 356 -----AGVRELCQGLGQ--PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408
Query: 477 NLT 479
L
Sbjct: 409 CLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 51/302 (16%), Positives = 84/302 (27%), Gaps = 66/302 (21%)
Query: 368 LSTRLRILRVGNNQL-FGNIPSGLRNLVNLERLLLEGNQFTGR----IPGSIGDLHKLQR 422
+S ++ L + +L L L + + L+ T I ++ L
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 423 LGLQGNKFLGEIPSSIGNL-----TLLITLSFDKNML--EG--SIPSSLGKCQNLILLGL 473
L L+ N+ + + LS L G + S+L L L L
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120
Query: 474 SNNNLTGTIPTEVIGLSSLS----------IYLDLSQNQLNGT----LPSNFGILKNLGV 519
S+N L GL L L L L+ L S +
Sbjct: 121 SDNLLGDA------GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174
Query: 520 LDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRI 579
L VS N ++ L ++ S +E L L ++
Sbjct: 175 LTVSNNDINEAGVRVLCQGLK-------------------DSPCQLEALKLESCGVTSDN 215
Query: 580 PKYFENFL----FLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTC 635
+ + L+ L L N G+ + L + L L + C
Sbjct: 216 CRDLCGIVASKASLRELALGSNKLGDV----GMAELCPGL-LHPSSRL----RTLWIWEC 266
Query: 636 SI 637
I
Sbjct: 267 GI 268
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 54/338 (15%), Positives = 107/338 (31%), Gaps = 47/338 (13%)
Query: 90 SLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFR-----LQFLWLDNNTFGGQ----IP 140
LS + L L+ L L +N + Q + L+ L L+ + +
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163
Query: 141 DNISHCVNLESLRLGFNELVGKVPRKLG-----SLSKLRTLAVHYNNLSGQ----IPSSF 191
+ + + L + N++ R L S +L L + ++ +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223
Query: 192 GNLSSLEVLSASANQF----VGQIPKTL-SQLKRMRFIGFGVNKLSGE----IPFSIYNL 242
+ +SL L+ +N+ + ++ L R+R + ++ + + +
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283
Query: 243 SSLNYFEFPVNQLQGS----LPSDLGFTLPNLERLNLGENQFTGPIPASISNA----SHL 294
SL N+L L L LE L + FT + S+ L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343
Query: 295 MRLTIPINGFSGK-VPSFG-----NLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLE 348
+ L I N V L+ + ++ + + L +L+ L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL--AATLLANHSLR 401
Query: 349 LLGININNFGG----MLPEAVGNLSTRLRILRVGNNQL 382
L ++ N G L E+V L L + +
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 41/139 (29%)
Query: 707 SLENLIGAGSFGSVYKGILNHDDH---ETLVAVK----------------------RSIR 741
L +G G+FG V + D VAVK
Sbjct: 30 KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGH 89
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL------------HPKPEAPRNS 789
H N+V ++ +C + ++ EF G+L +L P+
Sbjct: 90 HLNVVNLLGAC----TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 145
Query: 790 NLLQRLSIAVDVASALDYL 808
L + + VA +++L
Sbjct: 146 TLEHLICYSFQVAKGMEFL 164
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLL 444
+PSG+ + E+L L+ + L KL L L N+ L + + + +LT L
Sbjct: 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTEL 85
Query: 445 ITLSFDKNMLEGSIPSSL-GKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQ 502
TL N L S+P + L L L N L ++P+ V L+ L L L+ NQ
Sbjct: 86 GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK-ELRLNTNQ 142
Query: 503 LNGTLPSN-FGILKNLGVLDVSENKL 527
L ++P+ F L NL L +S N+L
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQL 167
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 5e-09
Identities = 46/146 (31%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Query: 375 LRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEI 434
L + + L + R L L L L+ NQ G DL +L LGL N+ L +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASL 98
Query: 435 PSSI-GNLTLLITLSFDKNMLEGSIPSSL-GKCQNLILLGLSNNNLTGTIPTEVI-GLSS 491
P + +LT L L N L+ S+PS + + L L L+ N L +IP L++
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156
Query: 492 LSIYLDLSQNQLNGTLPSNFGILKNL 517
L L LS NQL F L L
Sbjct: 157 LQ-TLSLSTNQLQSVPHGAFDRLGKL 181
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 50/175 (28%), Positives = 69/175 (39%), Gaps = 9/175 (5%)
Query: 428 NKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV- 486
K L +PS I T L L ++ L L L N L T+ V
Sbjct: 23 GKSLDSVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVF 79
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLG 545
L+ L L L+ NQL +LP F L L L + N+L +L++L
Sbjct: 80 DDLTELG-TLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 546 MNGNFFQGNIPSS-FSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHF 599
+N N Q +IP+ F L ++ L LS N L F+ LQ + L N F
Sbjct: 138 LNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 48/201 (23%), Positives = 71/201 (35%), Gaps = 57/201 (28%)
Query: 229 NKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASI 288
L+ + L+ L + NQLQ +L + + L L L L NQ +P +
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS-LPLGV 102
Query: 289 SNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLE 348
F +L +L + + N L +
Sbjct: 103 ----------------------FDHLTQLDKLYLGGNQLKS------------------- 121
Query: 349 LLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFT 407
LP V + T+L+ LR+ NQL +IP+G L NL+ L L NQ
Sbjct: 122 ------------LPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 408 GRIPGSIGDLHKLQRLGLQGN 428
G+ L KLQ + L GN
Sbjct: 169 SVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-07
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 13/148 (8%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
+P I + E L L L L+KL L + YN L F +L+ L
Sbjct: 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 199 VLSASANQF----VGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIY-NLSSLNYFEFPVN 253
L + NQ +G + L+QL ++ G N+L +P ++ L+ L N
Sbjct: 87 TLGLANNQLASLPLG-VFDHLTQLDKL---YLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
Query: 254 QLQGSLPSDLGFTLPNLERLNLGENQFT 281
QLQ S+P+ L NL+ L+L NQ
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 2/114 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDL L + F L L L++ N+L L LG+ N
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 556 PSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVF 609
F L ++ L L N L F+ L+ L L+ N + +P G F
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP-AGAF 151
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 43/182 (23%), Positives = 67/182 (36%), Gaps = 31/182 (17%)
Query: 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNELV 160
LDL++ L +L +L LD N + + L +L L N+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96
Query: 161 GKVPRKL-GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLK 219
+P + L++L L + N L F L+ L+ L + N QL+
Sbjct: 97 -SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-----------QLQ 144
Query: 220 RMRFIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGEN 278
IP ++ L++L NQLQ S+P L L+ + L N
Sbjct: 145 S--------------IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
Query: 279 QF 280
QF
Sbjct: 190 QF 191
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 49/146 (33%)
Query: 707 SLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRH 742
IG G+FG V++ + T+VAVK +
Sbjct: 50 EYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDN 109
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL--------------------HPK 782
N+VK++ C G L++E+M G L E+L
Sbjct: 110 PNIVKLLGVC----AVGKPM-CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVS 164
Query: 783 PEAPRNSNLLQRLSIAVDVASALDYL 808
P + ++L IA VA+ + YL
Sbjct: 165 SPGPPPLSCAEQLCIARQVAAGMAYL 190
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 12/137 (8%)
Query: 342 VNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-LRNLVNLERLL 400
+ L L N N F + + +LR + NN++ +I G + +L
Sbjct: 32 QYTAELRL---NNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEIL 87
Query: 401 LEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIP 459
L N+ L L+ L L+ N+ + + + L+ + LS N + ++
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145
Query: 460 ----SSLGKCQNLILLG 472
+L L LL
Sbjct: 146 PGAFDTLHSLSTLNLLA 162
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIP-GSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTL 443
IP + L L N+FT G L +L+++ NK + +I +
Sbjct: 26 IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASG 82
Query: 444 LITLSFDKNMLEGSIPSSL-GKCQNLILLGLSNNNLTGTIPTEV-IGLSSLSIYLDLSQN 501
+ + N LE ++ + ++L L L +N +T + + IGLSS+ L L N
Sbjct: 83 VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVR-LLSLYDN 139
Query: 502 QLNGTLPSNFGILKNLGVLDVSEN 525
Q+ P F L +L L++ N
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 4/143 (2%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPR-KLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSL 197
IP++I LRL NE L +LR + N ++ +F S +
Sbjct: 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83
Query: 198 EVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257
+ ++N+ K L+ ++ + N+++ S LSS+ NQ+
Sbjct: 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT- 142
Query: 258 SLPSDLGFTLPNLERLNLGENQF 280
++ TL +L LNL N F
Sbjct: 143 TVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 102 RVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNEL 159
L L NN F I L +L+ + NN I + + + L N L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93
Query: 160 VGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
+ L L+TL + N ++ SF LSS+ +LS NQ
Sbjct: 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 370 TRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428
+ + + + +N+L N+ + + L +L+ L+L N+ T S L ++ L L N
Sbjct: 81 SGVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139
Query: 429 KFLGEIPSSI-GNLTLLITLSFDKN 452
+ + + L L TL+ N
Sbjct: 140 Q-ITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRL 154
L LR ++ NN +I + + + L +N + + +L++L L
Sbjct: 55 KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLML 112
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
N + LS +R L+++ N ++ P +F L SL L+ AN F
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 36/152 (23%)
Query: 474 SNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN--FGILKNLGVLDVSENKLSGEI 531
SN L IP + + L L+ N+ L + F L L ++ S NK++ +I
Sbjct: 19 SNQKLN-KIPE---HIPQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DI 72
Query: 532 PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQN 591
+F G+ + L+ N L K F+ L+
Sbjct: 73 E-----------------------EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109
Query: 592 LNLSFNHFEGEVPIKGVFSNSSAV---SLDGN 620
L L N V F S+V SL N
Sbjct: 110 LMLRSNRIT-CVG-NDSFIGLSSVRLLSLYDN 139
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 40/137 (29%)
Query: 707 SLENLIGAGSFGSVYKGI---LNHDDHETLVAVK----------------------RSIR 741
+GAG+FG V + L +D VAVK +
Sbjct: 49 QFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQ 108
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL----------HPKPEAPRNSNL 791
H N+V ++ +C G ++ E+ G L +L A ++
Sbjct: 109 HENIVNLLGAC----THGGPV-LVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTAST 163
Query: 792 LQRLSIAVDVASALDYL 808
L + VA + +L
Sbjct: 164 RDLLHFSSQVAQGMAFL 180
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 44/141 (31%)
Query: 707 SLENLIGAGSFGSVYKGIL-----NHDDHETLVAVK----------------------RS 739
L +G G+FG V + + T VAVK
Sbjct: 72 VLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMI 131
Query: 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL------------HPKPEAPR 787
+H+N++ ++ +C Q ++ E+ G+L E+L +P
Sbjct: 132 GKHKNIINLLGAC----TQDGPL-YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEE 186
Query: 788 NSNLLQRLSIAVDVASALDYL 808
+ +S A VA ++YL
Sbjct: 187 QLSSKDLVSCAYQVARGMEYL 207
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 28/145 (19%), Positives = 44/145 (30%), Gaps = 49/145 (33%)
Query: 708 LENLIGAGSFGSVYKGI---LNHDDHETLVAVK---------------------RSIRHR 743
L +G G FG V K L T VAVK + + H
Sbjct: 27 LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHP 86
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL--------------------HPKP 783
+++K+ +C Q L+ E+ GSL +L
Sbjct: 87 HVIKLYGAC----SQDGPL-LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 784 EAPRNSNLLQRLSIAVDVASALDYL 808
R + +S A ++ + YL
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYL 166
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 104 LDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKV 163
+LK S + + L + + +N+ + I + N+ L LG N+L
Sbjct: 24 ANLKKKSVTD-AVTQNE-LNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKL---- 75
Query: 164 PRKLG---SLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKR 220
+ L+ L L + N L F L++L+ L NQ +L
Sbjct: 76 -HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 221 MRFIGFGVNKLSGEIPFSIY-NLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQ 279
+ ++ N+L +P ++ L++L + NQLQ SLP + L L+ L L +NQ
Sbjct: 135 LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK 429
+R L +G N+L +I + L+ L NL L+L GNQ G L L+ L L N+
Sbjct: 63 PNVRYLALGGNKL-HDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 430 FLGEIPSSIGN-LTLLITLSFDKNMLEGSIPSSL-GKCQNLILLGLSNNNLTGTIPTEVI 487
L +P + + LT L L+ N L+ S+P + K NL L LS N L ++P V
Sbjct: 121 -LQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF 177
Query: 488 G-LSSLSIYLDLSQNQL 503
L+ L L L QNQL
Sbjct: 178 DKLTQLK-DLRLYQNQL 193
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 50/213 (23%)
Query: 229 NKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF-TLPNLERLNLGENQFTGPIPAS 287
++ + + L+S++ + ++ S+ G LPN+ L LG N+
Sbjct: 29 KSVTDAVTQN--ELNSIDQIIANNSDIK-SVQ---GIQYLPNVRYLALGGNKLH------ 76
Query: 288 ISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLG---NGEKDDLEFVNSLVNA 344
+ + L L ++ ++ N L NG D L
Sbjct: 77 -------------------DISALKELTNLTYLILTGNQLQSLPNGVFDKL--------- 108
Query: 345 SRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEG 403
+ L+ L + N LP+ V + T L L + +NQL ++P G+ L NL L L
Sbjct: 109 TNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSY 166
Query: 404 NQFTGRIPGSIGD-LHKLQRLGLQGNKFLGEIP 435
NQ +P + D L +L+ L L N+ L +P
Sbjct: 167 NQLQ-SLPEGVFDKLTQLKDLRLYQNQ-LKSVP 197
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 53/272 (19%), Positives = 95/272 (34%), Gaps = 73/272 (26%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
PD+ L + + L+ + + + +++ + L ++
Sbjct: 13 FPDDAF--AETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDI--KSVQGIQYLPNVR 66
Query: 199 VLSASANQFVGQIPKTLS---QLKRMRFIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVNQ 254
L+ N+ +S +L + ++ N+L +P +++ L++L NQ
Sbjct: 67 YLALGGNKL-----HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQ 120
Query: 255 LQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNL 314
LQ SLP + L NL LNL NQ +P + F L
Sbjct: 121 LQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGV----------------------FDKL 156
Query: 315 HKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRI 374
L + +S N L + LPE V + T+L+
Sbjct: 157 TNLTELDLSYNQLQS-------------------------------LPEGVFDKLTQLKD 185
Query: 375 LRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQ 405
LR+ NQL ++P G L +L+ + L N
Sbjct: 186 LRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNP 216
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 29/141 (20%), Positives = 43/141 (30%), Gaps = 44/141 (31%)
Query: 707 SLENLIGAGSFGSVYKGI---LNHDDHETLVAVK----------------------RSIR 741
S +GAG+FG V + L D VAVK
Sbjct: 26 SFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGN 85
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL------------HPKPEAPRNS 789
H N+V ++ +C G ++ E+ G L +L P
Sbjct: 86 HMNIVNLLGACT----IGGPT-LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDEL 140
Query: 790 NLLQR--LSIAVDVASALDYL 808
L LS + VA + +L
Sbjct: 141 ALDLEDLLSFSYQVAKGMAFL 161
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 44/141 (31%)
Query: 707 SLENLIGAGSFGSVYKGILNH-----DDHETLVAVK----------------------RS 739
+L +G G+FG V VAVK
Sbjct: 38 TLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMI 97
Query: 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL------------HPKPEAPR 787
+H+N++ ++ +C Q ++ E+ G+L E+L
Sbjct: 98 GKHKNIINLLGAC----TQDGPL-YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEE 152
Query: 788 NSNLLQRLSIAVDVASALDYL 808
+S +A ++YL
Sbjct: 153 QMTFKDLVSCTYQLARGMEYL 173
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 32/131 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRH 742
D + L+ +IG+G+ V + VA+K H
Sbjct: 15 DDYELQEVIGSGATAVVQAAY--CAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHH 72
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL-HPKPEAPRNSNLLQRLSIAV-- 799
N+V TS F D LV + + GS+ + + H + S +L +IA
Sbjct: 73 PNIVSYYTS-----FVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATIL 127
Query: 800 -DVASALDYLH 809
+V L+YLH
Sbjct: 128 REVLEGLEYLH 138
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 44/140 (31%)
Query: 708 LENLIGAGSFGSVYKGIL-----NHDDHETLVAVK----------------------RSI 740
L +G G FG V + VAVK
Sbjct: 85 LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 144
Query: 741 RHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL------------HPKPEAPRN 788
+H+N++ ++ +C Q ++ E+ G+L E+L
Sbjct: 145 KHKNIINLLGAC----TQDGPL-YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQ 199
Query: 789 SNLLQRLSIAVDVASALDYL 808
+S +A ++YL
Sbjct: 200 MTFKDLVSCTYQLARGMEYL 219
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 49/146 (33%)
Query: 707 SLENLIGAGSFGSVYKGI---LNHDDHETLVAVK----------------------RSIR 741
++G+G+FG V ++ VAVK +
Sbjct: 48 EFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGS 107
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL-------------------HPK 782
H N+V ++ +C L++E+ G L +L +
Sbjct: 108 HENIVNLLGAC----TLSGPI-YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEE 162
Query: 783 PEAPRNSNLLQRLSIAVDVASALDYL 808
E L A VA +++L
Sbjct: 163 EEDLNVLTFEDLLCFAYQVAKGMEFL 188
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 39/128 (30%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRN 744
F+ IG GSFG V+KGI + + +VA+K
Sbjct: 24 FTKLEKIGKGSFGEVFKGI--DNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 81
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV---DV 801
+ K S + + ++ E++ GS + L P P L IA ++
Sbjct: 82 VTKYYGS-----YLKDTKLWIIMEYLGGGSALDLLEPGP--------LDETQIATILREI 128
Query: 802 ASALDYLH 809
LDYLH
Sbjct: 129 LKGLDYLH 136
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 6e-08
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 419 KLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNL 478
+ L + ++ +++ L L+ N +E I SSL +NL +L L N +
Sbjct: 26 EKVELHGMIPP-IEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82
Query: 479 TGTIPTEVIGLSSLSI---YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLS--GEIPN 533
++ L +++ L +S NQ+ S L NL VL +S NK++ GEI +
Sbjct: 83 K-----KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEI-D 134
Query: 534 SLGSCVRLEQLGMNGN 549
L + +LE L + GN
Sbjct: 135 KLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 19/149 (12%)
Query: 385 NIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLL 444
+ + L L + L L N +I + + L+ L L N + +I + L
Sbjct: 39 KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNL-IKKIENLDAVADTL 95
Query: 445 ITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS--IYLDLSQNQ 502
L N + S+ S + K NL +L +SNN +T E+ L++L L L+ N
Sbjct: 96 EELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNP 151
Query: 503 LNGTLPSNFGI----------LKNLGVLD 521
L N L NL LD
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 8/131 (6%)
Query: 468 LILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKL 527
+ L + + + L + L LS N + S+ ++NL +L + N +
Sbjct: 27 KVELHGMIPPIEK-MDATLSTLKACKH-LALSTNNIEKI--SSLSGMENLRILSLGRNLI 82
Query: 528 SGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSG-RIPKYFENF 586
+I N LE+L ++ N ++ S L + L +S N ++
Sbjct: 83 K-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139
Query: 587 LFLQNLNLSFN 597
L++L L+ N
Sbjct: 140 DKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 34/188 (18%)
Query: 109 NSFRNEIPQEIGYLFRLQFLWLDNNTFG-GQIPDNISHCVNLESLRLGFNELVGKVPRKL 167
++ R ++ + + L ++ +S + L L N + K+ L
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSL 66
Query: 168 GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFG 227
+ LR L++ N + +I + +LE L S NQ
Sbjct: 67 SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ--------------------- 104
Query: 228 VNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF--TLPNLERLNLGENQFTGPIP 285
+ LSG I L +L N++ + ++ L LE L L N
Sbjct: 105 IASLSG-----IEKLVNLRVLYMSNNKI--TNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157
Query: 286 ASISNASH 293
+ + + +
Sbjct: 158 ENNATSEY 165
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426
+ T +IL + +NQ+ P +L+NL+ L L NQ G L +L L L
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 427 GNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTE 485
N+ L +PS++ L L L N L +P + + +L L L N L +IP
Sbjct: 97 TNQ-LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHG 153
Query: 486 VI-GLSSLS-IYL 496
LSSL+ YL
Sbjct: 154 AFDRLSSLTHAYL 166
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 296 RLTIPINGFSGKVPS-FGNLHKLQWVSISMNHLGNGEKDDLE---FVNSLVNASRLELLG 351
L + N + P F +L L+ + + N LG L F +SL L +L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-----LPVGVF-DSLTQ---LTVLD 94
Query: 352 ININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIP 411
+ N LP AV + L+ L + N+L +P G+ L +L L L+ NQ
Sbjct: 95 LGTNQLTV-LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPH 152
Query: 412 GSIGDLHKLQRLGLQGN 428
G+ L L L GN
Sbjct: 153 GAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKL----SGEIPNSLGSCVRLEQLGMNGNF 550
L L NQ+ P F L NL L + N+L G + +SL +L L + N
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG-VFDSL---TQLTVLDLGTNQ 99
Query: 551 FQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFS 610
+ F L ++ L + N L+ +P+ E L +L L N + +P G F
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IP-HGAFD 156
Query: 611 N 611
Sbjct: 157 R 157
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 37/158 (23%)
Query: 174 RTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF----VGQIPKTLSQLKRMRFIGFGVN 229
+ L +H N ++ P F +L +L+ L +NQ VG + +L+QL +
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG-VFDSLTQLTVLD------- 94
Query: 230 KLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASIS 289
L NQL LPS + L +L+ L + N+ T +P I
Sbjct: 95 ---------------LGT-----NQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIE 132
Query: 290 NASHLMRLTIPINGFSGKVPS--FGNLHKLQWVSISMN 325
+HL L + N +P F L L + N
Sbjct: 133 RLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 409 RIPGSIGDLHKLQRLGLQGNKFLGEIPS-SIGNLTLLITLSFDKNMLEGSIPSSLGKCQN 467
+ L L ++ + L + + L L L+ K+ L P +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 468 LILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLN 504
L L LS N L ++ + + SL L LS N L+
Sbjct: 82 LSRLNLSFNALE-SLSWKTVQGLSLQE-LVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 5e-06
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRK-LGSLSKLRTLAVHYNNLSGQIPSSFGNLSSL 197
++ NL L + + + + + L L +LR L + + L P +F L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 198 EVLSASANQFVGQIPKTLSQLK 219
L+ S N KT+ L
Sbjct: 83 SRLNLSFNALESLSWKTVQGLS 104
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 370 TRLRILRVGNNQLFGNIPSG-LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428
L L + N Q ++ LR L L L + + P + +L RL L N
Sbjct: 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90
Query: 429 KFLGEIPSSIGNLTLLITLSFDKNML 454
L + L L N L
Sbjct: 91 A-LESLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 4/112 (3%)
Query: 465 CQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN-FGILKNLGVLDVS 523
L + + + G +L+ L + Q L L L L +
Sbjct: 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLT-ELYIENQQHLQHLELRDLRGLGELRNLTIV 64
Query: 524 ENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNL 575
++ L P++ RL +L ++ N + + L ++ L LS N L
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 46/316 (14%), Positives = 90/316 (28%), Gaps = 69/316 (21%)
Query: 365 VGNLSTRLRILRVGNNQL----FGNIPSGLRNLVNLERLLLEGNQFTGR----IPGSIGD 416
+ S + + + + ++ + L +++ ++L GN + +I
Sbjct: 1 MARFS--IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS 58
Query: 417 LHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNN 476
L+ G + I + + +L KC L + LS+N
Sbjct: 59 KKDLEIAEFSDI--------FTGRVKDEIPEAL------RLLLQALLKCPKLHTVRLSDN 104
Query: 477 NLTGTIPTEVIGL-------SSLSIYLDLSQNQL-------------NGTLPSNFGILKN 516
PT L + L +L L N L +
Sbjct: 105 AFG---PTAQEPLIDFLSKHTPLE-HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160
Query: 517 LGVLDVSENKLSGE----IPNSLGSCVRLEQLGMNGNFF-----QGNIPSSFSSLRGIEN 567
L + N+L + S L + M N + + + + ++
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220
Query: 568 LDLSRNNLSGR----IPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNL 623
LDL N + + +++ L+ L L+ G + A S N L
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR----GAAAVVDAFSKLENIGL 276
Query: 624 CGGISELHLSTCSIKE 639
L L I+
Sbjct: 277 ----QTLRLQYNEIEL 288
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 59/365 (16%), Positives = 110/365 (30%), Gaps = 79/365 (21%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFR----LQFLWLDNNTFGGQ----IPDNISHC 146
+ S + LK ++ E + + + ++ + L NT G + + +NI+
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
+LE G + A+ + + L + S N
Sbjct: 60 KDLEIAEFSDI--------FTGRVKDEIPEALRL------LLQALLKCPKLHTVRLSDNA 105
Query: 207 F----VGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSD 262
F + LS+ + + N L P + ++ LQ +
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARA---------LQELAVNK 153
Query: 263 LGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSI 322
P L + G N+ + F + L V +
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKT-------------------FQSHRLLHTVKM 194
Query: 323 SMNHLGN-GEKDDLEFVNSLVNASRLELLGININNFG--GM--LPEAVGNLSTRLRILRV 377
N + G + L + L L++L + N F G L A+ + LR L +
Sbjct: 195 VQNGIRPEGIEHLL--LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELGL 251
Query: 378 GNNQLFGN-----IPSGLRNLVN--LERLLLEGNQFTGRIPGSIGDLHK-----LQRLGL 425
+ L + L N L+ L L+ N+ ++ + L L L
Sbjct: 252 NDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310
Query: 426 QGNKF 430
GN+F
Sbjct: 311 NGNRF 315
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 30/127 (23%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKRSI-----------------------RH 742
F IG+G FGSV+K + D + A+KRS +H
Sbjct: 13 FHELEKIGSGEFGSVFKCV-KRLDGC-IYAIKRSKKPLAGSVDEQNALREVYAHAVLGQH 70
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
++V+ ++ + +D + E+ GSL + + + + + V
Sbjct: 71 SHVVRYFSA-----WAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVG 125
Query: 803 SALDYLH 809
L Y+H
Sbjct: 126 RGLRYIH 132
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 33/130 (25%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRH 742
+ L +++G G+ +V++G H L A+K + + H
Sbjct: 9 HLWLLSDILGQGATANVFRGR--HKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNH 66
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL---QRLSIAV 799
+N+VK+ A + K L+ EF GSL L E P N+ L + L +
Sbjct: 67 KNIVKLF---AIEEETTTRHKVLIMEFCPCGSLYTVL----EEPSNAYGLPESEFLIVLR 119
Query: 800 DVASALDYLH 809
DV +++L
Sbjct: 120 DVVGGMNHLR 129
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 27/126 (21%)
Query: 706 FSLENLIGAGSFGSVYKGI--------------LNHDDHETLVA----VKRSIRHRNLVK 747
F L L+G G++G VYKG + D+ E + +K+ HRN+
Sbjct: 26 FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIAT 85
Query: 748 IITSCASVDFQGNDFKA-LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV---DVAS 803
+ + G D + LV EF GS+ + + L+ IA ++
Sbjct: 86 YYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNT-----LKEEWIAYICREILR 140
Query: 804 ALDYLH 809
L +LH
Sbjct: 141 GLSHLH 146
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 38/127 (29%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNL 745
++ IG G+ G+VY + VA++ R ++ N+
Sbjct: 22 YTRFEKIGQGASGTVYTAM--DVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNI 79
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV---DVA 802
V + S + D +V E++ GSL + + + IA +
Sbjct: 80 VNYLDS-----YLVGDELWVVMEYLAGGSLTDVVTETC--------MDEGQIAAVCRECL 126
Query: 803 SALDYLH 809
AL++LH
Sbjct: 127 QALEFLH 133
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 33/123 (26%)
Query: 711 LIGAGSFGSVYKGILNHDDHET--LVAVK----------------------RSIRHRNLV 746
IG GSF +VYKG+ D ET VA + ++H N+V
Sbjct: 33 EIGRGSFKTVYKGL----DTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIV 88
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
+ S S LV E M +G+L+ +L + + + S + L
Sbjct: 89 RFYDSWESTVKGKKCI-VLVTELMTSGTLKTYL----KRFKVMKIKVLRSWCRQILKGLQ 143
Query: 807 YLH 809
+LH
Sbjct: 144 FLH 146
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 33/130 (25%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRH 742
+ L +++G G+ +V++G H L A+K + + H
Sbjct: 9 HLWLLSDILGQGATANVFRGR--HKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNH 66
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL---QRLSIAV 799
+N+VK+ A + K L+ EF GSL L E P N+ L + L +
Sbjct: 67 KNIVKLF---AIEEETTTRHKVLIMEFCPCGSLYTVL----EEPSNAYGLPESEFLIVLR 119
Query: 800 DVASALDYLH 809
DV +++L
Sbjct: 120 DVVGGMNHLR 129
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQI----PDNISHCVNLESLRLGFN 157
L L N F +P+E+ L + L NN +I + S+ L +L L +N
Sbjct: 34 TELYLDGNQF-TLVPKELSNYKHLTLIDLSNN----RISTLSNQSFSNMTQLLTLILSYN 88
Query: 158 ELVGKVPRKLGSLSKLRTLAVHYNNLSGQIP-SSFGNLSSLEVLSASANQF 207
L PR L LR L++H N++S +P +F +LS+L L+ AN
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 9e-06
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 342 VNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLL 400
+ + L L + N F ++P+ + N L ++ + NN++ + + N+ L L+
Sbjct: 31 RDVTELYL---DGNQFT-LVPKELSNY-KHLTLIDLSNNRI-STLSNQSFSNMTQLLTLI 84
Query: 401 LEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKN 452
L N+ P + L L+ L L GN + +P +L+ L L+ N
Sbjct: 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 428 NKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI 487
NK L +P I L D N +P L ++L L+ LSNN ++ T+ +
Sbjct: 19 NKGLKVLPKGIPRDVT--ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSF 74
Query: 488 -GLSSLSIYLDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSGEIP----NSLGSCVRL 541
++ L L LS N+L +P F LK+L +L + N +S +P N L + L
Sbjct: 75 SNMTQLL-TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA---L 128
Query: 542 EQLGMNGN 549
L + N
Sbjct: 129 SHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 471 LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSG 529
L L N T +P E+ L+ +DLS N+++ TL + F + L L +S N+L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLT-LIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 530 EIPNSLGSCVRLEQLGMNGNFFQGNIP-SSFSSLRGIENLDLSRN 573
P + L L ++GN +P +F+ L + +L + N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425
++ L + +N+L GL L +L +L L+ NQ TG P + +Q L L
Sbjct: 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85
Query: 426 QGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPS----SLGKCQNLILLG 472
NK + EI + + L L TL+ N + + L +L L
Sbjct: 86 GENK-IKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLAS 135
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 102 RVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQI---PDNI-SHCVNLESLRLGF 156
L L +N + G L L L L N Q+ N +++ L+LG
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRN----QLTGIEPNAFEGASHIQELQLGE 87
Query: 157 NELVGKVPRKL-GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
N++ ++ K+ L +L+TL ++ N +S +P SF +L+SL L+ ++N F
Sbjct: 88 NKI-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 30/134 (22%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGD-LHKLQRLGLQGNKFLGEIPSSIGNLTLL 444
IP + ++ LLL N+ + L L +L L+ N+ L I +
Sbjct: 23 IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNA------ 73
Query: 445 ITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQL 503
F+ ++ L L N + I ++ GL L L+L NQ+
Sbjct: 74 ----FEG-------------ASHIQELQLGENKIK-EISNKMFLGLHQLK-TLNLYDNQI 114
Query: 504 NGTLPSNFGILKNL 517
+ +P +F L +L
Sbjct: 115 SCVMPGSFEHLNSL 128
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 30/132 (22%)
Query: 471 LGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLS 528
L L++N L + L L L+L +NQL + N F ++ L + ENK+
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLV-KLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91
Query: 529 GEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPK-YFENFL 587
EI N M F L ++ L+L N +S + FE+
Sbjct: 92 -EISN-----------KM------------FLGLHQLKTLNLYDNQIS-CVMPGSFEHLN 126
Query: 588 FLQNLNLSFNHF 599
L +LNL+ N F
Sbjct: 127 SLTSLNLASNPF 138
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 39/134 (29%)
Query: 703 TDGFSLENLIGAG--SFGSVYKGILNHDDHETLVAVK----------------------R 738
+ L +IG G +V + V V+ +
Sbjct: 24 GGCYELLTVIGKGFEDLMTVNLAR--YKPTGEYVTVRRINLEACSNEMVTFLQGELHVSK 81
Query: 739 SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIA 798
H N+V + F ++ +V FM GS ++ + + L+IA
Sbjct: 82 LFNHPNIVPYRAT-----FIADNELWVVTSFMAYGSAKDLICTHFMDG-----MNELAIA 131
Query: 799 V---DVASALDYLH 809
V ALDY+H
Sbjct: 132 YILQGVLKALDYIH 145
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 37/174 (21%), Positives = 51/174 (29%), Gaps = 44/174 (25%)
Query: 665 SCLIITSWRSKSKRESA--TPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYK 722
L S R + S L S + F + +G GS+G V+K
Sbjct: 16 ENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFK 75
Query: 723 GILNHDDHETLVAVKRSI-----------------------RHRNLVKIITSCASVDFQG 759
D L AVKRS+ +H V++ + ++
Sbjct: 76 VRSKEDGR--LYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQA-----WEE 128
Query: 760 NDFKALVYEFMVNGSL----EEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
L E SL E W PEA Q D AL +LH
Sbjct: 129 GGILYLQTEL-CGPSLQQHCEAWGASLPEA-------QVWGYLRDTLLALAHLH 174
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425
+ + L + +N+L ++P G+ L L +L L NQ G L KL L L
Sbjct: 25 GIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83
Query: 426 QGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPS----SLGKCQNLILLG 472
NK L +P+ + LT L L+ D N L+ S+P L Q + L
Sbjct: 84 HENK-LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 133
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 361 LPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGD-LH 418
LP V + T+L L + NQ+ ++P G+ L L L L N+ +P + D L
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLT 100
Query: 419 KLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKN 452
+L+ L L N+ L +P I LT L + N
Sbjct: 101 QLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 39/140 (27%)
Query: 696 YQNLFKATD---GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------- 737
Y+++ + D + + +G G+FG VYK + + L A K
Sbjct: 8 YEHVRRDLDPNEVWEIVGELGDGAFGKVYKAK--NKETGALAAAKVIETKSEEELEDYIV 65
Query: 738 -----RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL 792
+ H +VK++ + + + ++ EF G+++ + L
Sbjct: 66 EIEILATCDHPYIVKLLGA-----YYHDGKLWIMIEFCPGGAVDAIMLELD------RGL 114
Query: 793 QRLSIAV---DVASALDYLH 809
I V + AL++LH
Sbjct: 115 TEPQIQVVCRQMLEALNFLH 134
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 30/162 (18%), Positives = 47/162 (29%), Gaps = 41/162 (25%)
Query: 674 SKSKRESATPPSALLASVLRVSYQNLFKATD---GFSLENLIGAGSFGSVYKGILNHDDH 730
+ + + + + D IG GS G V H
Sbjct: 12 DLGTENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGR 71
Query: 731 ETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFM 770
VAVK R +H N+V++ S + + ++ EF+
Sbjct: 72 --QVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKS-----YLVGEELWVLMEFL 124
Query: 771 VNGSLEEWLHPKPEAPRNSNLLQRLSIAV---DVASALDYLH 809
G+L + + L IA V AL YLH
Sbjct: 125 QGGALTDIVSQVR--------LNEEQIATVCEAVLQALAYLH 158
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR-------SIRHRNL--VKIITSCAS 754
D F + +GAG+ G V+K H ++A K +IR++ + ++++ C S
Sbjct: 33 DDFEKISELGAGNGGVVFKVS--HKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 90
Query: 755 ---VDFQGNDFKA----LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDY 807
V F G + + E M GSL++ L K +L + +++ V L Y
Sbjct: 91 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVL--KKAGRIPEQILGK--VSIAVIKGLTY 146
Query: 808 LH 809
L
Sbjct: 147 LR 148
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 31/134 (23%)
Query: 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RS 739
+ + ++ +G G FG V + I H D VA+K +
Sbjct: 11 QTCGPWEMKERLGTGGFGYVLRWI--HQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKK 68
Query: 740 IRHRNLVKII-TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL---QRL 795
+ H N+V ND L E+ G L ++L+ N L
Sbjct: 69 LNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLN----QFENCCGLKEGPIR 124
Query: 796 SIAVDVASALDYLH 809
++ D++SAL YLH
Sbjct: 125 TLLSDISSALRYLH 138
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 34/126 (26%)
Query: 708 LENLIGAGSFGSVY--------------KGILNHDDHETLVAVKR------SIRHRNLVK 747
++ I G G +Y KG+++ D E + H ++V+
Sbjct: 84 VKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQ 143
Query: 748 IITSCASVDFQGNDFKALVYEFMVNG-SLEEWLH---PKPEAPRNSNLLQRLSIAVDVAS 803
I D G+ +V E+ V G SL+ P EA ++ +++
Sbjct: 144 IFNFVEHTDRHGDPVGYIVMEY-VGGQSLKRSKGQKLPVAEA---------IAYLLEILP 193
Query: 804 ALDYLH 809
AL YLH
Sbjct: 194 ALSYLH 199
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426
+ + L + N L L +L +L L GN+ G L L L L
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 427 GNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIPSSL-GKCQNLILLGLSNNNLTGTIPT 484
N+ L +P+ + LT L L+ + N L+ S+P + K L L L N L ++P
Sbjct: 85 TNQ-LQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141
Query: 485 EVI-GLSSLS-IYL 496
V L+SL I+L
Sbjct: 142 GVFDRLTSLQYIWL 155
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 471 LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN-FGILKNLGVLDVSENKLSG 529
L L N+L L+SL+ L L N+L +LP+ F L +L L++S N+L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLT-QLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 530 EIPNSLGSCVRLEQLGMNGNFFQGNIPS-SFSSLRGIENLDLSRNNLSGRIPK-YFENFL 587
+L++L +N N Q ++P F L +++L L +N L +P F+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 148
Query: 588 FLQNLNLSFN 597
LQ + L N
Sbjct: 149 SLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVG 161
LDL+ NS ++ L L L+L N + +L L L N+L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 162 KVPRKLGSLSKLRTLAVHYNNLSGQIPS-SFGNLSSLEVLSASANQ 206
L++L+ LA++ N L +P F L+ L+ L NQ
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 361 LPEAVGNLSTRLRILRVGNNQLFGNIPSGL-RNLVNLERLLLEGNQFTGRIPGSIGD-LH 418
LP V N T L L + NQL ++P+G+ L L+ L L NQ +P + D L
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLT 124
Query: 419 KLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKN 452
+L+ L L N+ L +P + LT L + N
Sbjct: 125 QLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 5/143 (3%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
+P I L L N L L+ L L + N L F L+SL
Sbjct: 22 VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 199 VLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVNQLQG 257
L+ S NQ +L +++ + N+L +P +++ L+ L NQL+
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK- 137
Query: 258 SLPSDLGFTLPNLERLNLGENQF 280
S+P + L +L+ + L +N +
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDNPW 160
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 31/131 (23%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKII 749
F LIG+G FG V+K D +K + H N+V
Sbjct: 13 FKEIELIGSGGFGQVFKAKHRIDGK--TYVIKRVKYNNEKAEREVKALAKLDHVNIVHYN 70
Query: 750 TSCASVDFQGNDFKA-----------LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIA 798
D+ + EF G+LE+W+ + + L L +
Sbjct: 71 GCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLA--LELF 128
Query: 799 VDVASALDYLH 809
+ +DY+H
Sbjct: 129 EQITKGVDYIH 139
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 36/163 (22%)
Query: 670 TSWRSKSKRESATPPSA------LLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKG 723
+W S S + P LL L+ + + + +G GSFG V++
Sbjct: 18 KTWSSGSAKLQRLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRM 77
Query: 724 ILNHDDHET--LVAVK---------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766
D +T AVK + +V + + + + +
Sbjct: 78 K----DKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGA-----VREGPWVNIF 128
Query: 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
E + GSL + + K + L+YLH
Sbjct: 129 MELLEGGSLGQLI--KQMGCLPEDRAL--YYLGQALEGLEYLH 167
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 32/131 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV 746
F ++G G+FG V K D A+K S+ H+ +V
Sbjct: 8 FEEIAVLGQGAFGQVVKARNALDSR--YYAIKKIRHTEEKLSTILSEVMLLASLNHQYVV 65
Query: 747 KIITS-----CASVDFQGNDFKALVY---EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIA 798
+ + K+ ++ E+ NG+L + +H + N + +
Sbjct: 66 RYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSE---NLNQQRDEYWRLF 122
Query: 799 VDVASALDYLH 809
+ AL Y+H
Sbjct: 123 RQILEALSYIH 133
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 6e-06
Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 29/131 (22%)
Query: 703 TDGFSLENLIGAGSFGSVYKGILNHDDHET---LVAVK--------------------RS 739
+ + +L+G G+F VY+ + +K +
Sbjct: 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKP 123
Query: 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWL-HPKPEAPRNSNLLQRLSIA 798
+K ++ + LV E G+L + K + +S A
Sbjct: 124 SMQHMFMKFYSA-----HLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFA 178
Query: 799 VDVASALDYLH 809
+ + ++ +H
Sbjct: 179 MRMLYMIEQVH 189
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 36/157 (22%)
Query: 674 SKSKRESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETL 733
S + PP L + S + + F + +G GS+GSVYK H + +
Sbjct: 1 SLETVQLRNPPRRQLKKLDEDSLTK--QPEEVFDVLEKLGEGSYGSVYKA--IHKETGQI 56
Query: 734 VAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSL 775
VA+K + ++VK S + N +V E+ GS+
Sbjct: 57 VAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGS-----YFKNTDLWIVMEYCGAGSV 111
Query: 776 EEWLHPKPEAPRNSNLLQRLSIAV---DVASALDYLH 809
+ + + L IA L+YLH
Sbjct: 112 SDIIRLRN------KTLTEDEIATILQSTLKGLEYLH 142
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 7e-06
Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 24/181 (13%)
Query: 384 GNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIG---- 439
++ L + L L ++G L+ L + + I
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDSVVEDILGSDL 218
Query: 440 -NLTLLITLSFDKNMLEGSIPSSL------GKCQNLILLGLSNNNLTGTIPTEVIGLSSL 492
NL L+ ++ + + NL LG+ + + + L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 493 S--IYLDLSQNQLNGT----LPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLE 542
+D+S L L + +K+L +++ N LS E + SL + +
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338
Query: 543 Q 543
Sbjct: 339 D 339
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 2e-04
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 14/164 (8%)
Query: 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSI-YLDLSQNQLNGTLPSNF 511
+ + + L L L + N L SL I L + + L S+
Sbjct: 159 IEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218
Query: 512 GILKNLGVLDVSENKLSGEIPNSL------GSCVRLEQLGMNGNFFQGNIPSSFSS---L 562
L+ L + E+ N L+ LG+ Q + F L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 563 RGIENLDLSRNNLSGR----IPKYFENFLFLQNLNLSFNHFEGE 602
+E +D+S L+ + + + L+ +N+ +N+ E
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 10/139 (7%)
Query: 389 GLRNLVNLERLLLEGNQFT-GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447
R +++ L+L+ ++ G++ G + +L+ L L I +++ L L L
Sbjct: 12 RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKL 69
Query: 448 SFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS--IYLDLSQN---Q 502
N + G + KC NL L LS N + + + L L LDL
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNCEVTN 127
Query: 503 LNGTLPSNFGILKNLGVLD 521
LN + F +L L LD
Sbjct: 128 LNDYRENVFKLLPQLTYLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 128 LWLDNNTFG-GQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQ 186
L LDN+ G++ LE L L + L L+KL+ L + N +SG
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGG 79
Query: 187 IPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMR 222
+ +L L+ S N+ + T+ LK++
Sbjct: 80 LEVLAEKCPNLTHLNLSGNKI--KDLSTIEPLKKLE 113
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 502 QLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPS--SF 559
+L PS+ +K L VLD S + G++ LE L + S +
Sbjct: 10 ELRNRTPSD---VKEL-VLDNSRSNE-GKLEGLTDEFEELEFLSTINV----GLTSIANL 60
Query: 560 SSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600
L ++ L+LS N +SG + E L +LNLS N +
Sbjct: 61 PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 8e-05
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 455 EGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS--IYLDLSQNQLNGTLPSNFG 512
EG + + + L L N LT + L L+ L+LS N+++G L
Sbjct: 31 EGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNRVSGGLEVLAE 85
Query: 513 ILKNLGVLDVSENKLSG-EIPNSLGSCVRLEQLGMNGN 549
NL L++S NK+ L L+ L +
Sbjct: 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 8/109 (7%)
Query: 97 NLSFLRVLDLKNNSFRN-EIPQEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESLR 153
S ++ L L N+ ++ L+FL N + N+ L+ L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLE 70
Query: 154 LGFNELVGKVPRKLGSLSKLRTLAVHYNNLSG-QIPSSFGNLSSLEVLS 201
L N + G + L L + N + L +L+ L
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 30/155 (19%)
Query: 678 RESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK 737
+ PP + + F +E IG G F VY+ D VA+K
Sbjct: 6 QGMQGPPVPQFQPQKALRPDMGYNTLANFRIEKKIGRGQFSEVYRA-ACLLDGV-PVALK 63
Query: 738 -----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGS 774
+ + H N++K S F ++ +V E G
Sbjct: 64 KVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYAS-----FIEDNELNIVLELADAGD 118
Query: 775 LEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
L + + R V + SAL+++H
Sbjct: 119 LSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH 153
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 30/120 (25%)
Query: 711 LIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIIT 750
++G G++G VY G + + +A+K + ++H+N+V+ +
Sbjct: 29 VLGKGTYGIVYAG-RDLSNQV-RIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG 86
Query: 751 SCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEA-PRNSNLLQRLSIAVDVASALDYLH 809
S F N F + E + GSL L K N + + L YLH
Sbjct: 87 S-----FSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIG--FYTKQILEGLKYLH 139
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 10/139 (7%)
Query: 388 SGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447
+ N V L L G + I L + + N+ + ++ L L TL
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTL 69
Query: 448 SFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS--IYLDLSQN---Q 502
+ N + +L L L+NN+L ++ L+SL YL + +N
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTN 127
Query: 503 LNGTLPSNFGILKNLGVLD 521
+ + VLD
Sbjct: 128 KKHYRLYVIYKVPQVRVLD 146
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 11/118 (9%)
Query: 436 SSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS-- 493
+ N L + I + + S+N + ++ G L
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-----KLDGFPLLRRL 66
Query: 494 IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLS--GEIPNSLGSCVRLEQLGMNGN 549
L ++ N++ L +L L ++ N L G++ + L S L L + N
Sbjct: 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 92 SPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIP--DNISHCVNL 149
+ N R LDL+ I L + + +N +I D L
Sbjct: 12 AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRL 66
Query: 150 ESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSG-QIPSSFGNLSSLEVLSASAN 205
++L + N + +L L L + N+L +L SL L N
Sbjct: 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 11/129 (8%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
+ L+ + + + LD+ K+ I N + + + + + N I
Sbjct: 2 VKLTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EI 54
Query: 556 PS--SFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE--GEVPIKGVFSN 611
F LR ++ L ++ N + + L L L+ N G++ +
Sbjct: 55 RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114
Query: 612 SSAVSLDGN 620
+ + + N
Sbjct: 115 LTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 5/100 (5%)
Query: 122 LFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN 181
R + L L I + + +++ NE+ + L +L+TL V+ N
Sbjct: 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 74
Query: 182 NLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRM 221
+ L L L + N L L +
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSL--VELGDLDPLASL 112
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 31/134 (23%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR---------------------SIRH 742
F +G G FG V++ DD A+KR + H
Sbjct: 5 TDFEPIQCLGRGGFGVVFEAKNKVDDC--NYAIKRIRLPNRELAREKVMREVKALAKLEH 62
Query: 743 RNLVKIITSC----ASVDFQGNDFKALVY---EFMVNGSLEEWLHPKPEAPRNSNLLQRL 795
+V+ + + Q + K +Y + +L++W++ + L
Sbjct: 63 PGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERER-SVCL 121
Query: 796 SIAVDVASALDYLH 809
I + +A A+++LH
Sbjct: 122 HIFLQIAEAVEFLH 135
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 706 FSLENLIGAGSFGSVY-------------KGILNHDDHETL-----VAVKRSIRHRNLVK 747
+ +G G F V K IL H+ + + R H N+++
Sbjct: 31 YLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILR 90
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDY 807
++ C ++ L+ F G+L + + Q L + + + L+
Sbjct: 91 LVAYCLRERGAKHEAW-LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEA 149
Query: 808 LH 809
+H
Sbjct: 150 IH 151
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 30/130 (23%), Positives = 42/130 (32%), Gaps = 40/130 (30%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRH 742
FS IG GSFG+VY + +VA+K + +RH
Sbjct: 56 FSDLREIGHGSFGAVYFAR--DVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH 113
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV--- 799
N ++ + LV E+ GS + L LQ + IA
Sbjct: 114 PNTIQYRGC-----YLREHTAWLVMEYC-LGSASDLLEVHK------KPLQEVEIAAVTH 161
Query: 800 DVASALDYLH 809
L YLH
Sbjct: 162 GALQGLAYLH 171
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 32/123 (26%)
Query: 706 FSLENLIGAGSFGS-VYKGILNHDDHETLVAVKR------------------SIRHRNLV 746
F ++++G G+ G+ VY+G+ ++ D VAVKR S H N++
Sbjct: 26 FCPKDVLGHGAEGTIVYRGMFDNRD----VAVKRILPECFSFADREVQLLRESDEHPNVI 81
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
+ + + F+ + E +L+E++ K A L+ +++ S L
Sbjct: 82 RYFCT-----EKDRQFQYIAIEL-CAATLQEYVEQKDFAHLG---LEPITLLQQTTSGLA 132
Query: 807 YLH 809
+LH
Sbjct: 133 HLH 135
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 60/431 (13%), Positives = 122/431 (28%), Gaps = 61/431 (14%)
Query: 240 YNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNL--------------GENQFTGPIP 285
Y + + + P+ + P + + L G + P
Sbjct: 38 YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97
Query: 286 ASISNAS------HLMRLTIPINGFSGKVPSFGNLHKLQ---WVSISMNHLGNGEKDDLE 336
++S++ L R+ + + SF N L S + L
Sbjct: 98 EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL-------AA 150
Query: 337 FVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNI-PSGLRNLV- 394
+ N L+L ++++ G + T L L + L + S L LV
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVT 208
Query: 395 ---NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQG------NKFLGEIPSSIGNLTLLI 445
NL+ L L ++ + +L+ LG G + ++ L
Sbjct: 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG 505
LS + + +P+ C L L LS + +++ L + +
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDA 328
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565
L K+L L V ++ PN + L + +
Sbjct: 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS--------------MGCPKL 374
Query: 566 ENLDLSRNNLSGRIPKYF-ENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLC 624
E++ ++ N + L + + + ++ + C
Sbjct: 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH---C 431
Query: 625 GGISELHLSTC 635
+ L LS
Sbjct: 432 KDLRRLSLSGL 442
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 21/127 (16%)
Query: 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR-------SIRHRNLVKI---I 749
KA D +G G++G V K ++AVKR + R L+ + +
Sbjct: 4 VKADD-LEPIMELGRGAYGVVEKMRHVPSG--QIMAVKRIRATVNSQEQKRLLMDLDISM 60
Query: 750 TSCAS---VDFQGNDFK----ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
+ V F G F+ + E M + SL+++ + + IAV +
Sbjct: 61 RTVDCPFTVTFYGALFREGDVWICMELM-DTSLDKFYKQVIDKGQTIPEDILGKIAVSIV 119
Query: 803 SALDYLH 809
AL++LH
Sbjct: 120 KALEHLH 126
|
| >4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 41/133 (30%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIR 741
+ + IG GSFG D +K +++
Sbjct: 24 EKYVRLQKIGEGSFGKAILVKSTEDGR--QYVIKEINISRMSSKEREESRREVAVLANMK 81
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPK-----PEAPRNSNLLQRLS 796
H N+V+ S F+ N +V ++ G L + ++ + E Q L
Sbjct: 82 HPNIVQYRES-----FEENGSLYIVMDYCEGGDLFKRINAQKGVLFQED-------QILD 129
Query: 797 IAVDVASALDYLH 809
V + AL ++H
Sbjct: 130 WFVQICLALKHVH 142
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 42/158 (26%), Positives = 62/158 (39%), Gaps = 14/158 (8%)
Query: 369 STRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428
S+ + + R + +L P+ +R LV L + G+I G + L+ L L
Sbjct: 5 SSGMDMKRRIHLELRNRTPAAVRELV----LDNCKSN-DGKIEGLTAEFVNLEFLSLINV 59
Query: 429 KFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIG 488
L + S++ L L L +N + G + K NL L LS N L + +
Sbjct: 60 G-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEP 115
Query: 489 LSSLS--IYLDLSQN---QLNGTLPSNFGILKNLGVLD 521
L L LDL LN S F +L L LD
Sbjct: 116 LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 456 GSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLS--IYLDLSQNQLNGTLPSNFGI 513
G I + NL L L N L V L L L+LS+N++ G L
Sbjct: 39 GKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKLELSENRIFGGLDMLAEK 93
Query: 514 LKNLGVLDVSENKLS--GEIPNSLGSCVRLEQLGMNGN 549
L NL L++S NKL + L L+ L +
Sbjct: 94 LPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 128 LWLDNNTFG-GQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQ 186
L LDN G+I + VNLE L L L+ V L L KL+ L + N + G
Sbjct: 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGG 86
Query: 187 IPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMR 222
+ L +L L+ S N+ + TL LK++
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKL--KDISTLEPLKKLE 120
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
+D+ + ++ L VLD ++ G+I V LE L + +
Sbjct: 8 MDMKRRIHLELRNRTPAAVREL-VLDNCKSND-GKIEGLTAEFVNLEFLSLINV----GL 61
Query: 556 PS--SFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600
S + L ++ L+LS N + G + E L +LNLS N +
Sbjct: 62 ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 32/126 (25%)
Query: 706 FSLENLIGAGSFGSV-YKGILNHDDHETLVAVKR------------------SIRHRNLV 746
E ++G GS G+V ++G VAVKR S H N++
Sbjct: 17 VVSEKILGYGSSGTVVFQGSFQGRP----VAVKRMLIDFCDIALMEIKLLTESDDHPNVI 72
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPK---PEAPRNSNLLQRLSIAVDVAS 803
+ S + F + E N +L++ + K E + +S+ +AS
Sbjct: 73 RYYCS-----ETTDRFLYIALEL-CNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIAS 126
Query: 804 ALDYLH 809
+ +LH
Sbjct: 127 GVAHLH 132
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 25/126 (19%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR-------SIRHRNLVKIIT---SCA 753
+ IG G++GSV K + H ++AVKR + + L+ + S
Sbjct: 22 EDLKDLGEIGRGAYGSVNKMV--HKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSD 79
Query: 754 S---VDFQGNDFKA----LVYEFMVNGSLEEWL---HPKPEAPRNSNLLQRLSIAVDVAS 803
V F G F+ + E M + S +++ + + +L + I +
Sbjct: 80 CPYIVQFYGALFREGDCWICMELM-STSFDKFYKYVYSVLDDVIPEEILGK--ITLATVK 136
Query: 804 ALDYLH 809
AL++L
Sbjct: 137 ALNHLK 142
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 20/190 (10%), Positives = 42/190 (22%), Gaps = 57/190 (30%)
Query: 673 RSKSKRESATPPSALLASVLRVSYQNLFKATDG-----FSLENLIGAGSFGSVYKGILNH 727
R ++ +E A A+ A+V + + + L + G V+
Sbjct: 26 REEALKEPAAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVR--- 82
Query: 728 DDHET--LVAVK-----------------------RSIRHRNLVKIITSC---------- 752
D E A+K + + +
Sbjct: 83 -DVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141
Query: 753 -------ASVDFQGNDFKA----LVYEFMV--NGSLEEWLHPKPEAPRNSNLLQRLSIAV 799
A + +D+ L+ L L + +L +
Sbjct: 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTA 201
Query: 800 DVASALDYLH 809
+ L
Sbjct: 202 QLIRLAANLQ 211
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLL 444
+P+G+ + L L NQ T PG L +L RL L N+ L +P+ + LT L
Sbjct: 24 VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQL 80
Query: 445 ITLSFDKNMLEGSIPS----SLGKCQNLILLG 472
LS + N L+ SIP +L ++ LL
Sbjct: 81 TQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLN 111
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 690 SVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------ 737
VL + + ++ +IG GSFG V++ L D VA+K
Sbjct: 26 KVLASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVESDE---VAIKKVLQDKRFKNRE 82
Query: 738 ----RSIRHRNLVKIITSCASVDFQGNDFKA-LVYEFM 770
R ++H N+V + S + ++ LV E++
Sbjct: 83 LQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYV 120
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLL 444
+P+G+ + +RL L NQ T PG L LQ+L NK L IP+ + LT L
Sbjct: 27 VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQL 83
Query: 445 ITLSFDKNMLEGSIPS----SLGKCQNLILLG 472
L + N L+ SIP +L ++ L
Sbjct: 84 TQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYN 114
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 28/128 (21%)
Query: 706 FSLENLIGAGSFGSVYKG------------ILNHDDHETLVAVKRSI-------RHRNLV 746
+ ++ G F VY+ L ++ E A+ + + H N+V
Sbjct: 30 LRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIV 89
Query: 747 KIITSCASVDFQGNDFKALVYEFMV--NGSLEEWLHPKPEAPRNSNLL---QRLSIAVDV 801
+ ++ + + + +A G L E+L + + L L I
Sbjct: 90 QFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFL----KKMESRGPLSCDTVLKIFYQT 145
Query: 802 ASALDYLH 809
A+ ++H
Sbjct: 146 CRAVQHMH 153
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 33/131 (25%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIR 741
+ + + IG GS+G K D ++ K R ++
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGK--ILVWKELDYGSMTEAEKQMLVSEVNLLRELK 63
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL---QRLSIA 798
H N+V+ +D +V E+ G L + + + L L +
Sbjct: 64 HPNIVRYYDRI--IDRTNTTLY-IVMEYCEGGDLASVIT---KGTKERQYLDEEFVLRVM 117
Query: 799 VDVASALDYLH 809
+ AL H
Sbjct: 118 TQLTLALKECH 128
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 19/114 (16%)
Query: 674 SKSKRESATPPSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETL 733
K S + V ++ +IG GSFG VY+ L L
Sbjct: 24 GSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGE--L 81
Query: 734 VAVK----------------RSIRHRNLVKIITSCASVDFQGNDFK-ALVYEFM 770
VA+K R + H N+V++ S + ++ LV +++
Sbjct: 82 VAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV 135
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 18/128 (14%), Positives = 46/128 (35%), Gaps = 37/128 (28%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHR 743
+S+ IG+G V++ + ++ + + A+K ++
Sbjct: 11 YSILKQIGSGGSSKVFQVL---NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQH 67
Query: 744 NL--VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
+ +++ + + +V E N L WL K ++ + +R S ++
Sbjct: 68 SDKIIRLYDY-----EITDQYIYMVMEC-GNIDLNSWLKKK----KSIDPWERKSYWKNM 117
Query: 802 ASALDYLH 809
A+ +H
Sbjct: 118 LEAVHTIH 125
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 42/341 (12%), Positives = 88/341 (25%), Gaps = 76/341 (22%)
Query: 369 STRLRILRVGNNQL----FGNIPSGLR-NLVNLERLLLEGNQFTGRIPGSIGDL-----H 418
+ L + N L + ++ L L GN + + +
Sbjct: 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80
Query: 419 KLQRLGLQGNKFLGEIPSSIGNL-----TLLITLSFDKNMLEGS----IPSSLGKC-QNL 468
+ L L GN + + + L N + ++
Sbjct: 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140
Query: 469 ILLGLSNNNLTGTIPTEVIGLSSLS----------IYLDLSQNQLNGTLPSNFGIL---- 514
L L N+L L L+L N L ++
Sbjct: 141 TSLNLRGNDLGIK------SSDELIQILAAIPANVNSLNLRGNNL-----ASKNCAELAK 189
Query: 515 ------KNLGVLDVSENKLSGEIPNSLGSCVR-----LEQLGMNGNFFQG----NIPSSF 559
++ LD+S N L + L + L + N G N+
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249
Query: 560 SSLRGIENLDLSRNNLSGRIPKYFENFL-------FLQNLNLSFNHFEGEVPIKGVFSNS 612
SL+ ++ + L + + + + + ++ + S
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS----HSIPIS 305
Query: 613 SAVSLDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIP 653
+ + L G L + +++ ++ L IP
Sbjct: 306 NLIR-----ELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 809 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.95 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.91 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.9 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.9 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.9 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.88 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.86 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.86 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.84 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.83 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.82 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.82 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.8 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.8 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.79 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.78 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.77 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.77 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.75 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.75 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.74 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.74 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.73 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.73 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.71 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.71 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.71 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.7 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.7 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.7 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.69 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.69 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.69 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.69 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.68 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.68 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.68 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.68 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.67 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.66 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.64 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.64 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.64 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.63 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.58 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.57 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.57 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.56 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.56 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.55 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.54 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.54 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.53 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.53 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.51 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.51 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.51 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.51 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.51 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.49 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.48 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.48 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.47 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.46 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.45 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.45 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.45 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.44 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.44 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.43 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.43 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.43 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.43 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.43 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.43 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.43 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.43 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.43 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.42 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.42 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.42 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.42 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.41 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.41 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.41 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.41 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.41 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.41 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.41 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.4 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.4 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.4 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.4 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.4 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.4 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.4 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.4 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.4 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.4 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.4 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.4 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.4 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.39 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.39 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.39 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.39 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.39 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.39 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.39 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.39 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.38 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.37 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.37 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.37 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.37 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.37 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.37 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.37 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.37 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.37 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.37 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.37 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.36 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.36 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.36 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.36 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.36 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.36 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.35 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.35 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.35 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.35 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.35 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.35 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.35 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.35 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.35 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.35 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.35 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.35 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.35 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.35 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.35 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.35 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.34 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.34 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.34 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.34 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.34 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.34 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.34 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.34 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.34 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.33 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.33 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.33 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.33 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.33 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.33 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.33 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.33 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.33 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.33 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.33 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.33 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.33 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.33 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.33 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.33 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.32 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.32 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.32 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.32 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.32 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.32 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.32 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.32 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.32 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.32 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.32 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.32 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.32 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.32 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.32 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.32 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.32 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.32 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.32 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.32 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.32 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.32 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.31 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.31 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.31 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.31 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.31 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.31 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.31 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.31 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.31 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.31 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.31 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.31 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.31 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.3 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.3 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.3 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.3 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.3 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.3 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.3 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.3 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.3 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.3 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.29 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.29 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.29 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.29 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.29 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.29 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.29 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.29 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.29 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.28 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.28 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.28 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.28 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.28 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.28 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.28 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.28 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.27 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.27 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.27 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.27 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.27 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.27 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.26 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.26 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.26 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.26 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.26 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.26 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.25 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.25 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.25 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.24 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.24 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.24 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.23 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.23 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.23 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.23 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.23 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.23 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.23 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.22 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.21 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.21 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.21 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.21 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.2 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.19 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.19 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.18 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.18 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.18 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.17 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.16 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.16 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 99.16 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.16 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.16 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.16 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.16 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.15 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.15 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.15 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.15 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.15 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.14 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.13 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.13 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.13 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.1 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.09 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.09 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.09 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.08 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.06 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.04 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.04 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.03 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.01 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.0 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 98.99 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.96 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.93 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.9 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 98.86 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 98.55 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.54 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.53 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.51 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.42 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 98.38 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 98.24 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 98.06 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.85 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.72 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.98 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.92 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 96.85 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.82 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.69 | |
| 1nd4_A | 264 | Aminoglycoside 3'-phosphotransferase; protein kina | 95.32 | |
| 3dxp_A | 359 | Putative acyl-COA dehydrogenase; protein kinase-li | 95.0 | |
| 3d1u_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 92.73 | |
| 3r70_A | 320 | Aminoglycoside phosphotransferase; structural geno | 86.84 | |
| 4gkh_A | 272 | Aminoglycoside 3'-phosphotransferase APHA1-IAB; py | 84.43 | |
| 2ks1_B | 44 | Epidermal growth factor receptor; ERBB1, ERBB2, tr | 84.03 | |
| 3jr1_A | 312 | Putative fructosamine-3-kinase; YP_719053.1, struc | 82.47 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-85 Score=780.30 Aligned_cols=596 Identities=33% Similarity=0.480 Sum_probs=486.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCccccCCCCCCCCCCcccccccCCCCCcEEEEECCCCCCccc---cC-------------
Q 040849 29 KSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGS---LS------------- 92 (809)
Q Consensus 29 ~~~~~~~~~ll~~k~~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~---~~------------- 92 (809)
.+.++|++||++||+++. ||. .+++|+.++|||+|.||+|+ +++|++|+|++..+.|. ++
T Consensus 8 ~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred cCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 457889999999999997 887 89999988899999999998 58999999999999987 44
Q ss_pred ----------ccccCCCCccEEeCCCCCCCccCCc--cccccccCCccccCCCcCcccCCccc-cCCCcCcEEEcccCCC
Q 040849 93 ----------PHIGNLSFLRVLDLKNNSFRNEIPQ--EIGYLFRLQFLWLDNNTFGGQIPDNI-SHCVNLESLRLGFNEL 159 (809)
Q Consensus 93 ----------~~l~~l~~L~~LdLs~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l 159 (809)
+.++++++|++|||++|.++|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|+|++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 4678889999999999999988888 89999999999999999988888776 7888888888888888
Q ss_pred CCCCccc---ccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcc
Q 040849 160 VGKVPRK---LGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIP 236 (809)
Q Consensus 160 ~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 236 (809)
++..|.. +.++++|++|++++|.+++..|. .++++|++|++++|++++.+|. ++++++|++|++++|.+++.+|
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 8776665 55555555555555555443332 4445555555555555544443 4555555555555555554444
Q ss_pred hhccCC----------------------CCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCC
Q 040849 237 FSIYNL----------------------SSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHL 294 (809)
Q Consensus 237 ~~l~~l----------------------~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 294 (809)
..+.++ ++|++|++++|.++|.+|..++..+++|++|++++|++++.+|..+..+++|
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred HHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 444444 4555555555555556666665345788888888888888888888888888
Q ss_pred ceEecCCCcceeeCCC--CCCCCCCcEEEeccccCCCCCCCchhhhh-------------------cccc--cCCccEEe
Q 040849 295 MRLTIPINGFSGKVPS--FGNLHKLQWVSISMNHLGNGEKDDLEFVN-------------------SLVN--ASRLELLG 351 (809)
Q Consensus 295 ~~L~l~~n~l~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-------------------~l~~--~~~L~~L~ 351 (809)
+.|++++|.+++.+|. +..+++|++|++++|.+++..+..+.... .+.. +++|+.|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 8888888888877775 78888888888888888755554432221 1111 56788888
Q ss_pred ccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeee
Q 040849 352 ININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFL 431 (809)
Q Consensus 352 l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 431 (809)
++.|.+.+.+|..+..+.. |++|++++|++++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|+++
T Consensus 401 L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp CCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 8888888888888877754 999999999999888989999999999999999999889999999999999999999999
Q ss_pred cccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCC-
Q 040849 432 GEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN- 510 (809)
Q Consensus 432 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~- 510 (809)
+.+|..+.++++|++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..+..+++| +.|++++|+++|.+|..
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 78999999988777654
Q ss_pred ---------------------------------------------------------------------ccCCCCCCEEE
Q 040849 511 ---------------------------------------------------------------------FGILKNLGVLD 521 (809)
Q Consensus 511 ---------------------------------------------------------------------~~~l~~L~~L~ 521 (809)
+..+++|++||
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 33457899999
Q ss_pred ccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccc
Q 040849 522 VSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 522 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
|++|+++|.+|.+|++++.|+.|+|++|+++|.+|..|+++++|++||||+|+++|.+|..|.++++|++||+++|+++|
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccCCCCCCCCccccCcccccc
Q 040849 602 EVPIKGVFSNSSAVSLDGNDNLCGGISELHLSTCSI 637 (809)
Q Consensus 602 ~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~~~~ 637 (809)
.||..++|.++...+|.||+++||.+ ++.|..
T Consensus 719 ~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~ 750 (768)
T 3rgz_A 719 PIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDP 750 (768)
T ss_dssp ECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCS
T ss_pred cCCCchhhccCCHHHhcCCchhcCCC----CcCCCC
Confidence 99999999999999999999999965 347764
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-65 Score=613.32 Aligned_cols=515 Identities=32% Similarity=0.503 Sum_probs=438.1
Q ss_pred CcEEEEECCCCCCccccCccc-cCCCCccEEeCCCCCCCccCCcc---c----------------------cccccCCcc
Q 040849 75 QRVTALLLPSLLLQGSLSPHI-GNLSFLRVLDLKNNSFRNEIPQE---I----------------------GYLFRLQFL 128 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g~~~~~l-~~l~~L~~LdLs~n~l~~~~p~~---~----------------------~~l~~L~~L 128 (809)
.+++.|+|+++.+.+.+|..+ +++++|++|||++|.+++..|.. + +.+++|++|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 205 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence 356677777777777666654 66666666666666666555544 3 456666667
Q ss_pred ccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCccc
Q 040849 129 WLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208 (809)
Q Consensus 129 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 208 (809)
+|++|.+++.+|. ++++++|++|+|++|.+++.+|..++.+++|++|++++|++++.+|.. .+++|++|++++|+++
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccC
Confidence 7777777766666 777777777777777777777777777777777777777777766654 6777888888888888
Q ss_pred ccCcccccCC-CCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcc
Q 040849 209 GQIPKTLSQL-KRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPAS 287 (809)
Q Consensus 209 ~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 287 (809)
+.+|..+..+ ++|++|++++|.+++.+|..+.++++|++|++++|.++|.+|......+++|++|++++|++++.+|..
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 8888887765 889999999999988889899999999999999999988888874447899999999999998889988
Q ss_pred cccCC-CCceEecCCCcceeeCCC-CCC--CCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccch
Q 040849 288 ISNAS-HLMRLTIPINGFSGKVPS-FGN--LHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPE 363 (809)
Q Consensus 288 l~~l~-~L~~L~l~~n~l~~~~~~-~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~ 363 (809)
+..++ +|+.|++++|.+++.+|. +.. +++|+.|++++|.+++..+ ..+.++++|+.|+++.|.+.+.+|.
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------PTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC------GGGGGCTTCCEEECCSSEEESCCCG
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC------HHHhcCCCCCEEECcCCcccCcccH
Confidence 88887 899999999999887776 554 7889999999998876544 4567889999999999999999999
Q ss_pred hhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCC
Q 040849 364 AVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTL 443 (809)
Q Consensus 364 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 443 (809)
.+..++. |+.|++++|++.+.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++
T Consensus 437 ~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 437 SLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 9988865 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhc-----------------------------------
Q 040849 444 LITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIG----------------------------------- 488 (809)
Q Consensus 444 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~----------------------------------- 488 (809)
|++|++++|++++.+|..+..+++|++||+++|+++|.+|..+..
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999888876543
Q ss_pred -----------------------------------ccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCc
Q 040849 489 -----------------------------------LSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPN 533 (809)
Q Consensus 489 -----------------------------------l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 533 (809)
++.+ ++|||++|+++|.+|..++.++.|+.|||++|+++|.+|.
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccc-cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 3455 6899999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCc-ccc
Q 040849 534 SLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNH-FEG 601 (809)
Q Consensus 534 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~-l~g 601 (809)
+|+++++|++|||++|+++|.+|..++++++|++||+|+|+++|.||.. ..+..+....+.+|+ +.|
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 9999999999999999999999999999999999999999999999975 234445555667776 555
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=564.77 Aligned_cols=549 Identities=21% Similarity=0.186 Sum_probs=467.5
Q ss_pred CcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEc
Q 040849 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 154 (809)
.+++.|+|+++.+++..+..|+++++|++|||++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57999999999999988888999999999999999999999999999999999999999999766668999999999999
Q ss_pred ccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCccccc--CCCCccEEEeecCcCC
Q 040849 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLS--QLKRMRFIGFGVNKLS 232 (809)
Q Consensus 155 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~ 232 (809)
++|.+++..|..|+++++|++|+|++|.+++..|..++++++|++|++++|++++..+..+. .+++|+.|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988888999999999999999999999999999999999999999999988877664 5689999999999999
Q ss_pred CCcchhccCCC---------------------------CCceeccCCcccccccChhhhcCC--CCCcEEEccCcccccc
Q 040849 233 GEIPFSIYNLS---------------------------SLNYFEFPVNQLQGSLPSDLGFTL--PNLERLNLGENQFTGP 283 (809)
Q Consensus 233 ~~~~~~l~~l~---------------------------~L~~L~l~~n~l~~~~p~~~~~~l--~~L~~L~Ls~N~l~~~ 283 (809)
+..|..+..++ +|+.|++++|.+++..|..+. .+ ++|+.|++++|++++.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 98888777654 456667777777766666554 34 3488888888888877
Q ss_pred CCcccccCCCCceEecCCCcceeeCCC-CCCCCCCcEEEeccccCCCCCCC-chhh--hhcccccCCccEEecccccccc
Q 040849 284 IPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSISMNHLGNGEKD-DLEF--VNSLVNASRLELLGININNFGG 359 (809)
Q Consensus 284 ~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-~~~~--~~~l~~~~~L~~L~l~~n~~~~ 359 (809)
.|..+..+++|+.|++++|.+++..|. +..+++|+.|+++.|...+.... .+.. ...+..+++|+.|+++.|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 777888888888888888888877765 78888888888877655432110 0000 0145678899999999999998
Q ss_pred ccchhhhhccccCcEEEccCCcccc--cCCccccCC--CCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccC
Q 040849 360 MLPEAVGNLSTRLRILRVGNNQLFG--NIPSGLRNL--VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIP 435 (809)
Q Consensus 360 ~~p~~~~~~~~~L~~L~Ls~n~l~~--~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 435 (809)
..|..+..++. |++|++++|.+.. ..+..+..+ ++|+.|++++|++++..|..|..+++|++|++++|++.+.+|
T Consensus 344 ~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 344 IKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCTTTTTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CChhHhccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 88877777754 9999999997543 222334333 589999999999999999999999999999999999998766
Q ss_pred -cCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCc--cccCcchhcccCCceEEEccCCcCcccCCCCcc
Q 040849 436 -SSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT--GTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFG 512 (809)
Q Consensus 436 -~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~ 512 (809)
..|.++++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|..+..+++| +.|++++|++++..+..|.
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLE 501 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhc
Confidence 67899999999999999999999999999999999999999987 5789999999999 7999999999988888899
Q ss_pred CCCCCCEEEccccccccccC--------ccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccc
Q 040849 513 ILKNLGVLDVSENKLSGEIP--------NSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFE 584 (809)
Q Consensus 513 ~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~ 584 (809)
.+++|++|+|++|++++..+ ..|.++++|++|+|++|+++...+..|.++++|+.|||++|++++..+..|.
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 99999999999999986532 3478999999999999999966667899999999999999999988888899
Q ss_pred cCCCCCeEEccCCcccccCCCC-C-CCCCCCcccccCCCCCCCC
Q 040849 585 NFLFLQNLNLSFNHFEGEVPIK-G-VFSNSSAVSLDGNDNLCGG 626 (809)
Q Consensus 585 ~l~~L~~l~ls~N~l~g~~p~~-~-~~~~~~~~~~~~n~~lc~~ 626 (809)
++++|+.|++++|++++..|.. . .+.++..+++.+||+.|..
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 9999999999999999876642 1 4667888999999999964
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-58 Score=545.62 Aligned_cols=523 Identities=22% Similarity=0.229 Sum_probs=466.1
Q ss_pred CcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEc
Q 040849 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 154 (809)
.+++.|+|+++.+++..|..++++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 47889999999999999999999999999999999999777778999999999999999999888889999999999999
Q ss_pred ccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCC--CCCCCCEEEcccCcccccCcccccCC--------------
Q 040849 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFG--NLSSLEVLSASANQFVGQIPKTLSQL-------------- 218 (809)
Q Consensus 155 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l-------------- 218 (809)
++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++|++++|++++..|..+..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 99999999999999999999999999999987777654 56899999999999998888776654
Q ss_pred -------------CCccEEEeecCcCCCCcchhccCCCC--CceeccCCcccccccChhhhcCCCCCcEEEccCcccccc
Q 040849 219 -------------KRMRFIGFGVNKLSGEIPFSIYNLSS--LNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGP 283 (809)
Q Consensus 219 -------------~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~ 283 (809)
++|+.|++++|.+++..|..+.+++. |+.|++++|++++..|..+. .+++|++|++++|.+++.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEE
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCcc
Confidence 56788889999999988999988865 99999999999977777665 899999999999999999
Q ss_pred CCcccccCCCCceEecCCCcceee-----CC-----CCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEecc
Q 040849 284 IPASISNASHLMRLTIPINGFSGK-----VP-----SFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGIN 353 (809)
Q Consensus 284 ~p~~l~~l~~L~~L~l~~n~l~~~-----~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 353 (809)
.|..+..+++|+.|++++|...+. +| .|..+++|+.|++++|.+++..+ ..+..+++|+.++++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS------NMFTGLINLKYLSLS 361 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT------TTTTTCTTCCEEECT
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh------hHhccccCCcEEECC
Confidence 999999999999999998765542 22 47889999999999999988654 345678899999999
Q ss_pred cccccccc-c-hhhhhcc-ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCC-ccccCCCCCCEEEeeCCe
Q 040849 354 INNFGGML-P-EAVGNLS-TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIP-GSIGDLHKLQRLGLQGNK 429 (809)
Q Consensus 354 ~n~~~~~~-p-~~~~~~~-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~ 429 (809)
.|.+.... + ..+..+. +.|+.|++++|++++..|..+..+++|++|++++|.+++.+| ..+.++++|++|++++|+
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 99864332 2 2222221 469999999999999999999999999999999999998776 689999999999999999
Q ss_pred eecccCcCCcCCCCccEEEcccccCc--ccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccC
Q 040849 430 FLGEIPSSIGNLTLLITLSFDKNMLE--GSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTL 507 (809)
Q Consensus 430 l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~ 507 (809)
+.+..+..|..+++|+.|++++|.+. +..|..+.++++|++|++++|++++..|..+.++++| ++|++++|++++..
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARLW 520 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGG
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCccccc
Confidence 99999999999999999999999997 5789999999999999999999998777889999999 79999999998753
Q ss_pred C--------CCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCccccc
Q 040849 508 P--------SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRI 579 (809)
Q Consensus 508 p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 579 (809)
+ ..|..+++|++|+|++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++.+
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 2 34789999999999999999655567999999999999999999888888999999999999999999999
Q ss_pred ccccc-cCCCCCeEEccCCcccccCCC
Q 040849 580 PKYFE-NFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 580 p~~~~-~l~~L~~l~ls~N~l~g~~p~ 605 (809)
|..|. .+++|+.+++++|++.+..+.
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hhHhcccccccCEEEccCCCcccCCcc
Confidence 99888 899999999999999998874
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=540.51 Aligned_cols=494 Identities=20% Similarity=0.198 Sum_probs=346.2
Q ss_pred CccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 040849 100 FLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVH 179 (809)
Q Consensus 100 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 179 (809)
.+++|||++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 34555555555554444455555555555555555554445555555555555555555554444455555555555555
Q ss_pred cccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCc--eeccCCccccc
Q 040849 180 YNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLN--YFEFPVNQLQG 257 (809)
Q Consensus 180 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~l~~ 257 (809)
+|++++..|..|+++++|++|++++|++++..++.+..+++|+.|++++|.+++..|..+..+++|+ .|++++|.+++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 5555544444455555555555555555443323333355555555555555544444455555554 44555555544
Q ss_pred ccChhhhcCCCCCcEEEccCcc---------------------cc-----ccCCcccccCC--CCceEecCCCcceeeCC
Q 040849 258 SLPSDLGFTLPNLERLNLGENQ---------------------FT-----GPIPASISNAS--HLMRLTIPINGFSGKVP 309 (809)
Q Consensus 258 ~~p~~~~~~l~~L~~L~Ls~N~---------------------l~-----~~~p~~l~~l~--~L~~L~l~~n~l~~~~~ 309 (809)
..|..+ ...+|+.|++++|. +. ...+..+..+. +|+.|++++|.+++..+
T Consensus 194 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 194 IEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp ECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred cChhHh--hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 333332 22344445444443 11 11122222222 67888888888887776
Q ss_pred C-CCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCc
Q 040849 310 S-FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPS 388 (809)
Q Consensus 310 ~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~ 388 (809)
. |..+++|+.|++++|.++... ..+..+++|+.|++++|.+.+..|..+..++. |++|++++|.+.+.+|.
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp-------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELP-------SGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGT 343 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCC-------SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCS
T ss_pred HHhccccCCCEEeccCCccCCCC-------hhhcccccCCEEECccCCcCcCchhhhhccCc-CCEEECCCCCcccccch
Confidence 6 888888999999888887432 34567788888899888888887877777754 99999999988866655
Q ss_pred -cccCCCCCCeeeCCCccceecC--CccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCcc-ccC
Q 040849 389 -GLRNLVNLERLLLEGNQFTGRI--PGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSS-LGK 464 (809)
Q Consensus 389 -~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~ 464 (809)
.+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..|..+++|++|++++|++++..|.. +..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 4888999999999999988766 778888999999999999998888888888999999999999988776544 888
Q ss_pred CCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCccc---CCCCccCCCCCCEEEccccccccccCccccCCCCC
Q 040849 465 CQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGT---LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 541 (809)
Q Consensus 465 l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 541 (809)
+++|++|++++|++++..|..+.++++| ++|++++|++++. .+..+..+++|++|+|++|++++..|..|.++++|
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 8999999999999988888888888888 7899999998863 33568888999999999999998888899999999
Q ss_pred CEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCC
Q 040849 542 EQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 542 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
++|+|++|++++.+|..|.+++.| .||+++|++++.+|..|..+++|+++++++|++.+.++.
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999 999999999988888888899999999999999887663
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-60 Score=552.10 Aligned_cols=495 Identities=20% Similarity=0.276 Sum_probs=368.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCcc-------ccCCCCCCCCCCcc---cccccCCCCCcEEEEECCCCCCccccCccccCCC
Q 040849 30 SNETDQLALLEFKAKVTHDPLE-------VLSSWNYSRHFCQW---KGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLS 99 (809)
Q Consensus 30 ~~~~~~~~ll~~k~~~~~~~~~-------~l~~W~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~ 99 (809)
....|++||.+||+++..+.+. ...+|+.+.+||.| .||+|+.. +||++|+|++++++|.+|+++++|+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 3457999999999998644332 24489988999999 99999865 8999999999999999999999999
Q ss_pred CccEEeCCCCCC------Cc------cCCccccccccCCccccCCCcCcccCCccccC-CCcCcEEEcccCCCCCCCccc
Q 040849 100 FLRVLDLKNNSF------RN------EIPQEIGYLFRLQFLWLDNNTFGGQIPDNISH-CVNLESLRLGFNELVGKVPRK 166 (809)
Q Consensus 100 ~L~~LdLs~n~l------~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~ 166 (809)
+|++|||++|.+ .+ .+|... +.+|+ +++++|.+.+.+|..+.. +..+..+++....+..
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 177 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK----- 177 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-----
T ss_pred cceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-----
Confidence 999999999976 33 455544 66777 999999999888877763 2334444444322221
Q ss_pred ccCCCCCCEEEcc--cccCcccCCccCCCCCCCCEEEcccCccccc-----------------Cccccc--CCCCccEEE
Q 040849 167 LGSLSKLRTLAVH--YNNLSGQIPSSFGNLSSLEVLSASANQFVGQ-----------------IPKTLS--QLKRMRFIG 225 (809)
Q Consensus 167 l~~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~ 225 (809)
.....++.+.+. +|++++ +|..|+++++|++|+|++|++++. +|..++ ++++|++|+
T Consensus 178 -~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 178 -SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp -CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred -ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 111222322332 466776 677777777777777777777764 777777 788888888
Q ss_pred eecCcCCCCcchhccCCCCCceeccCCcc-ccc-ccChhhhcCC------CCCcEEEccCccccccCCc--ccccCCCCc
Q 040849 226 FGVNKLSGEIPFSIYNLSSLNYFEFPVNQ-LQG-SLPSDLGFTL------PNLERLNLGENQFTGPIPA--SISNASHLM 295 (809)
Q Consensus 226 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~p~~~~~~l------~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~ 295 (809)
+++|.+.+.+|..+.++++|++|++++|+ ++| .+|..++ .+ ++|++|++++|+++ .+|. .+..+++|+
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 88888877888778888888888888887 777 7777765 33 78899999999888 7887 888888888
Q ss_pred eEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEE
Q 040849 296 RLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRIL 375 (809)
Q Consensus 296 ~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L 375 (809)
.|++++|.++|.+|.+..+++ |++|
T Consensus 334 ~L~L~~N~l~g~ip~~~~l~~-------------------------------------------------------L~~L 358 (636)
T 4eco_A 334 MLECLYNQLEGKLPAFGSEIK-------------------------------------------------------LASL 358 (636)
T ss_dssp EEECCSCCCEEECCCCEEEEE-------------------------------------------------------ESEE
T ss_pred EEeCcCCcCccchhhhCCCCC-------------------------------------------------------CCEE
Confidence 888888888876664433333 4555
Q ss_pred EccCCcccccCCccccCCCC-CCeeeCCCccceecCCccccCCC--CCCEEEeeCCeeecccCcCCc-------CCCCcc
Q 040849 376 RVGNNQLFGNIPSGLRNLVN-LERLLLEGNQFTGRIPGSIGDLH--KLQRLGLQGNKFLGEIPSSIG-------NLTLLI 445 (809)
Q Consensus 376 ~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~-------~l~~L~ 445 (809)
++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|++++..|..+. .+++|+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 55555555 45556666666 777777777776 5666665544 677777777777777777776 667777
Q ss_pred EEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhccc--------CCceEEEccCCcCcccCCCCcc--CCC
Q 040849 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLS--------SLSIYLDLSQNQLNGTLPSNFG--ILK 515 (809)
Q Consensus 446 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--------~l~~~L~Ls~N~l~~~~p~~~~--~l~ 515 (809)
+|++++|++++..+..+..+++|++|+|++|+++ .+|....... +| +.|+|++|+++ .+|..+. .++
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~ 513 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL-TSIDLRFNKLT-KLSDDFRATTLP 513 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC-CEEECCSSCCC-BCCGGGSTTTCT
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc-cEEECcCCcCC-ccChhhhhccCC
Confidence 8888888777444444556778888888888887 5665444322 66 67888888888 5676665 888
Q ss_pred CCCEEEccccccccccCccccCCCCCCEEeC------cCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCC
Q 040849 516 NLGVLDVSENKLSGEIPNSLGSCVRLEQLGM------NGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFL 589 (809)
Q Consensus 516 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L 589 (809)
+|+.|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..+.++++|+.|||++|++ +.+|..+. ++|
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L 589 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNI 589 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTC
T ss_pred CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcC
Confidence 88888888888886 7888888888888888 56888899999999999999999999999 67887766 789
Q ss_pred CeEEccCCcccc
Q 040849 590 QNLNLSFNHFEG 601 (809)
Q Consensus 590 ~~l~ls~N~l~g 601 (809)
+.|++++|++..
T Consensus 590 ~~L~Ls~N~l~~ 601 (636)
T 4eco_A 590 SVLDIKDNPNIS 601 (636)
T ss_dssp CEEECCSCTTCE
T ss_pred CEEECcCCCCcc
Confidence 999999998874
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-57 Score=529.41 Aligned_cols=513 Identities=21% Similarity=0.182 Sum_probs=407.9
Q ss_pred CcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEc
Q 040849 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 154 (809)
.+++.|+|+++.+++..+..|+++++|++|||++|.+++..|.+|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 46777788887777777777777888888888888777777777777888888888888777777777777888888888
Q ss_pred ccCCCCCCCcccccCCCCCCEEEcccccCcc-cCCccCCCCCCCCEEEcccCcccccCcccccCCCCcc----EEEeecC
Q 040849 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSG-QIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMR----FIGFGVN 229 (809)
Q Consensus 155 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~n 229 (809)
++|.+++..+..++++++|++|++++|++++ .+|..|+++++|++|++++|++++..|..|+.+++|+ .|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 8887777666777777888888888887765 4577777788888888888877777776666665544 6777777
Q ss_pred cCCCCcchhccCCCCCceeccCCcccccc-cChhhhcCCCCCcEEEccCcccccc------CCcccccCC--CCceEec-
Q 040849 230 KLSGEIPFSIYNLSSLNYFEFPVNQLQGS-LPSDLGFTLPNLERLNLGENQFTGP------IPASISNAS--HLMRLTI- 299 (809)
Q Consensus 230 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~Ls~N~l~~~------~p~~l~~l~--~L~~L~l- 299 (809)
.+++..+..+... +|+.|++++|.+.+. +|..+. .+++|+.+++..+.+.+. .+..+..+. .++.+++
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHH-TTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CcceeCcccccCc-eeeeeeccCCccchhHHHHHhc-cccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 7776555555444 777788877777643 333333 677777777755443321 111222222 3455666
Q ss_pred CCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccC
Q 040849 300 PINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGN 379 (809)
Q Consensus 300 ~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~ 379 (809)
..|.+.+..|.+..+++|+.|++++|.+.... .+..+++|+.|++++|.+ +.+|.. .+ ++|+.|++++
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l-~~lp~~--~l-~~L~~L~l~~ 337 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQL-KQFPTL--DL-PFLKSLTLTM 337 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCC-SSCCCC--CC-SSCCEEEEES
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh--------hccccccCCEEEcccccC-cccccC--CC-CccceeeccC
Confidence 67788888888889999999999999986542 456778899999999999 778843 44 4599999999
Q ss_pred CcccccCCccccCCCCCCeeeCCCccceec--CCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCccc
Q 040849 380 NQLFGNIPSGLRNLVNLERLLLEGNQFTGR--IPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGS 457 (809)
Q Consensus 380 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 457 (809)
|+..+.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+.
T Consensus 338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 9766544 577899999999999999876 37888999999999999999885 568889999999999999999988
Q ss_pred CC-ccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcc-cCCCCccCCCCCCEEEccccccccccCccc
Q 040849 458 IP-SSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG-TLPSNFGILKNLGVLDVSENKLSGEIPNSL 535 (809)
Q Consensus 458 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 535 (809)
.| ..+..+++|++|++++|++++..|..+.++++| +.|++++|++++ .+|..+..+++|++|+|++|++++..|..|
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 77 688999999999999999998889999999999 799999999998 478889999999999999999999999999
Q ss_pred cCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCC-CCCeEEccCCcccccCCCC
Q 040849 536 GSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFL-FLQNLNLSFNHFEGEVPIK 606 (809)
Q Consensus 536 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~-~L~~l~ls~N~l~g~~p~~ 606 (809)
.++++|++|+|++|++++.+|..|.++++|+.||+++|+++ .+|..+..++ +|++|++++|++.+..+..
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 99999999999999999999999999999999999999999 5666688887 5999999999999877753
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-57 Score=525.54 Aligned_cols=496 Identities=21% Similarity=0.150 Sum_probs=444.4
Q ss_pred CcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEc
Q 040849 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 154 (809)
..++.|+++++.+++..|..|+++++|++|||++|.+++..|.+|+++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46899999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCcc--EEEeecCcCC
Q 040849 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMR--FIGFGVNKLS 232 (809)
Q Consensus 155 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~--~L~L~~n~l~ 232 (809)
++|.+++..|..++++++|++|++++|++++..+..+..+++|++|++++|++++..|..|+.+++|+ .|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999988788999999999999999999975545555699999999999999999899999999999 8999999999
Q ss_pred CCcchhccCCCCCceeccCCccccc-------------------------ccChhhhcCC--CCCcEEEccCccccccCC
Q 040849 233 GEIPFSIYNLSSLNYFEFPVNQLQG-------------------------SLPSDLGFTL--PNLERLNLGENQFTGPIP 285 (809)
Q Consensus 233 ~~~~~~l~~l~~L~~L~l~~n~l~~-------------------------~~p~~~~~~l--~~L~~L~Ls~N~l~~~~p 285 (809)
+..|..+.. .+|+.|++++|.... .++...+..+ .+|+.|++++|.+++..+
T Consensus 193 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 193 GIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp EECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred ccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 887776654 678888888775110 1111111112 278999999999999888
Q ss_pred cccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchh-
Q 040849 286 ASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEA- 364 (809)
Q Consensus 286 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~- 364 (809)
..+..+++|+.|++++|.++...+.+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+.+|..
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ------ISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG------GCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch------hhhhccCcCCEEECCCCCcccccchhh
Confidence 88999999999999999999544459999999999999999986543 35667899999999999999888765
Q ss_pred hhhccccCcEEEccCCcccccC--CccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcC-CcCC
Q 040849 365 VGNLSTRLRILRVGNNQLFGNI--PSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSS-IGNL 441 (809)
Q Consensus 365 ~~~~~~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l 441 (809)
+..+ ++|++|++++|++.+.. |..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..|.. +..+
T Consensus 346 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 346 LENL-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTC-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhcc-CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 4554 56999999999999876 788999999999999999999999999999999999999999999887654 8999
Q ss_pred CCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccc---cCcchhcccCCceEEEccCCcCcccCCCCccCCCCCC
Q 040849 442 TLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGT---IPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLG 518 (809)
Q Consensus 442 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~ 518 (809)
++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++| +.|++++|++++..|..|..+++|+
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-EILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-CEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc-cEEECCCCccCccChhhhccccCCC
Confidence 9999999999999999999999999999999999999873 33678889999 8999999999999999999999999
Q ss_pred EEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccc
Q 040849 519 VLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP 580 (809)
Q Consensus 519 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 580 (809)
+|||++|++++..|..+.+++.| +|++++|++++.+|..|..+++|+.|++++|++++..+
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999 99999999999999999999999999999999998665
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-57 Score=539.34 Aligned_cols=496 Identities=18% Similarity=0.227 Sum_probs=290.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCccccCCCCCCC-----CC--Ccc------------cccccCCCCCcEEEEECCCCCCc
Q 040849 28 HKSNETDQLALLEFKAKVTHDPLEVLSSWNYSR-----HF--CQW------------KGVTCSPRHQRVTALLLPSLLLQ 88 (809)
Q Consensus 28 ~~~~~~~~~~ll~~k~~~~~~~~~~l~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~l~~~~l~ 88 (809)
+.+..+|++||++||+++. +| +|+.+. +| |.| .||+|+. .+||++|+|++++++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 3456789999999999995 54 686543 56 999 9999986 589999999999999
Q ss_pred cccCccccCCCCccEEeC-CCCCCCccCCccccc----------------------------------------------
Q 040849 89 GSLSPHIGNLSFLRVLDL-KNNSFRNEIPQEIGY---------------------------------------------- 121 (809)
Q Consensus 89 g~~~~~l~~l~~L~~LdL-s~n~l~~~~p~~~~~---------------------------------------------- 121 (809)
|.+|++|++|++|++||| ++|.++|..|-.-..
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 899888774432111
Q ss_pred -----cccCCccccCC--CcCcccCCccccCCCcCcEEEcccCCCCCC-CcccccCCCCCCEEEcccccCcccCCccCC-
Q 040849 122 -----LFRLQFLWLDN--NTFGGQIPDNISHCVNLESLRLGFNELVGK-VPRKLGSLSKLRTLAVHYNNLSGQIPSSFG- 192 (809)
Q Consensus 122 -----l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~- 192 (809)
...++.+.+.. |.+++ +|..|+++++|++|+|++|.+++. +|..+.. ++.|.+++.+|..++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~--------~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED--------ANSDYAKQYENEELSW 487 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--------TTSHHHHHHTTSCCCG
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc--------cccccccccCChhhhh
Confidence 11222222222 44444 444455555555555555555441 0000000 000111113555555
Q ss_pred -CCCCCCEEEcccCcccccCcccccCCCCccEEEeecCc-CCC-CcchhccCCC-------CCceeccCCcccccccCh-
Q 040849 193 -NLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNK-LSG-EIPFSIYNLS-------SLNYFEFPVNQLQGSLPS- 261 (809)
Q Consensus 193 -~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~p~- 261 (809)
++++|++|+|++|.+.+.+|..|+++++|+.|++++|+ +++ .+|..+.+++ +|++|++++|+++ .+|.
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 566 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence 66666666666666666666666666666666666665 555 5555554444 6666666666666 6665
Q ss_pred -hhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC-CCCCCC-CcEEEeccccCCCCCCCchhhh
Q 040849 262 -DLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHK-LQWVSISMNHLGNGEKDDLEFV 338 (809)
Q Consensus 262 -~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~ 338 (809)
.+. .+++|+.|+|++|+++ .+| .+..+++|+.|++++|.++ .+|. +..+++ |+.|++++|.++... .
T Consensus 567 ~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~----- 636 (876)
T 4ecn_A 567 ASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP-N----- 636 (876)
T ss_dssp HHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC-S-----
T ss_pred hhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc-h-----
Confidence 444 5666666666666666 555 6666666666677666666 4443 666666 777777766665221 1
Q ss_pred hcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCcc---cc--CCCCCCeeeCCCccceecCCcc
Q 040849 339 NSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG---LR--NLVNLERLLLEGNQFTGRIPGS 413 (809)
Q Consensus 339 ~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~---l~--~l~~L~~L~Ls~N~l~~~~p~~ 413 (809)
.+..++. ++|+.|++++|++.+.+|.. +. .+++|+.|+|++|.++ .+|..
T Consensus 637 -~~~~~~~-----------------------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~ 691 (876)
T 4ecn_A 637 -IFNAKSV-----------------------YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTE 691 (876)
T ss_dssp -CCCTTCS-----------------------SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHH
T ss_pred -hhhcccc-----------------------CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHH
Confidence 1111110 11444444444444433321 11 2235566666666665 33332
Q ss_pred -ccCCCCCCEEEeeCCeeecccCcCCcC--------CCCccEEEcccccCcccCCcccc--CCCCCcEEeCcCCcCcccc
Q 040849 414 -IGDLHKLQRLGLQGNKFLGEIPSSIGN--------LTLLITLSFDKNMLEGSIPSSLG--KCQNLILLGLSNNNLTGTI 482 (809)
Q Consensus 414 -~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~ 482 (809)
+..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 335566666666666665 33332221 225555555555555 4444444 55555555555555554 4
Q ss_pred CcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCC
Q 040849 483 PTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSL 562 (809)
Q Consensus 483 p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 562 (809)
|..+..+++| +.|+|++|+ ++++|++.+.+|..|.++++|+.|+|++|++ +.+|..+.
T Consensus 769 p~~l~~L~~L-~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-- 826 (876)
T 4ecn_A 769 PTQPLNSSQL-KAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-- 826 (876)
T ss_dssp CCGGGGCTTC-CEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred chhhhcCCCC-CEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--
Confidence 5555555555 455555544 3455777777777777777777777777777 56666654
Q ss_pred CCCCEEeCCCCCcccccccccccCCCCCeEEccCCccc
Q 040849 563 RGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 563 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 600 (809)
++|+.|||++|++....+..+.....+..+.+.+|++.
T Consensus 827 ~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 47777777777777666666655555556666666543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-56 Score=539.61 Aligned_cols=519 Identities=21% Similarity=0.233 Sum_probs=363.4
Q ss_pred CcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccC-CccccccccCCccccCCCcCcccCCc
Q 040849 63 CQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEI-PQEIGYLFRLQFLWLDNNTFGGQIPD 141 (809)
Q Consensus 63 c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~ 141 (809)
|.|..|.+ ...+++.|+|+++.+++..+..|.++++|++|||++|.+.+.+ |.+|+++++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 56777776 3357888888888888877888888888888888888655555 77788888888888888888887788
Q ss_pred cccCCCcCcEEEcccCCCCCCCccc--ccCCCCCCEEEcccccCcccCC-ccCCCCCCCCEEEcccCcccccCcccccCC
Q 040849 142 NISHCVNLESLRLGFNELVGKVPRK--LGSLSKLRTLAVHYNNLSGQIP-SSFGNLSSLEVLSASANQFVGQIPKTLSQL 218 (809)
Q Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 218 (809)
.|.++++|++|+|++|.+++..|.. |.++++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..|..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 8888888888888888888765554 7888888888888888876654 467888888888888888888777777776
Q ss_pred --CCccEEEeecCcCCCCcchhccCCCC------CceeccCCcccccccChhhhcC--CCCCcEEEccCc---------c
Q 040849 219 --KRMRFIGFGVNKLSGEIPFSIYNLSS------LNYFEFPVNQLQGSLPSDLGFT--LPNLERLNLGEN---------Q 279 (809)
Q Consensus 219 --~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~p~~~~~~--l~~L~~L~Ls~N---------~ 279 (809)
++|+.|+++.|.+.+..|..+..+.+ |+.|++++|.+++.+|..+... .++++.+.++.+ .
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 78888888888888877777666655 8888888888877777665532 245677776632 2
Q ss_pred ccccCCcccccC--CCCceEecCCCcceeeCCC-CCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccc
Q 040849 280 FTGPIPASISNA--SHLMRLTIPINGFSGKVPS-FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININN 356 (809)
Q Consensus 280 l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 356 (809)
+.+..+..+..+ ++|+.|++++|.+.+..+. |..+++|+.|++++|.+++..+. .+..+++|+.|+++.|.
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE------AFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT------TTTTCSSCCEEEEESCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH------HhcCCCCCCEEECCCCC
Confidence 333333444443 5677777777777776665 77777777777777777655432 34456677777777777
Q ss_pred cccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCc
Q 040849 357 FGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPS 436 (809)
Q Consensus 357 ~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 436 (809)
+.+..|..+..++. |+.|++++|++.+..+..|..+++|++|+|++|.+++. ..+++|+.|++++|+++ .+|.
T Consensus 326 l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~ 398 (844)
T 3j0a_A 326 LGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPK 398 (844)
T ss_dssp CSCCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCC
T ss_pred CCccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccc
Confidence 76666666666543 77777777777766666677777777777777777632 22667777777777776 3333
Q ss_pred CCcCCCCccEEEcccccCcccCC-ccccCCCCCcEEeCcCCcCccccCc-chhcccCCceEEEccCCcCc-----ccCCC
Q 040849 437 SIGNLTLLITLSFDKNMLEGSIP-SSLGKCQNLILLGLSNNNLTGTIPT-EVIGLSSLSIYLDLSQNQLN-----GTLPS 509 (809)
Q Consensus 437 ~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~l~~~L~Ls~N~l~-----~~~p~ 509 (809)
. ..+++.|++++|++++... ..+.++++|+.|+|++|++++..+. .+..+++| +.|++++|.++ +..+.
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-CBCEEESCCCSSSCCSCCCSS
T ss_pred c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-ccccCCCCccccccccccchh
Confidence 2 3456777777777765322 2244667777777777777654332 23345556 56777777775 33445
Q ss_pred CccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCC
Q 040849 510 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFL 589 (809)
Q Consensus 510 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L 589 (809)
.|..+++|+.|||++|++++..|..|.++++|+.|+|++|++++..|..+. ++|+.|||++|++++.+|..|. +|
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L 549 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SL 549 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SC
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---Cc
Confidence 566777777777777777777777777777777777777777766666555 6777777777777777776553 56
Q ss_pred CeEEccCCcccccCCC
Q 040849 590 QNLNLSFNHFEGEVPI 605 (809)
Q Consensus 590 ~~l~ls~N~l~g~~p~ 605 (809)
+.+++++|++.+.++.
T Consensus 550 ~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 550 SVLDITHNKFICECEL 565 (844)
T ss_dssp CEEEEEEECCCCSSSC
T ss_pred CEEEecCCCccccccc
Confidence 7777777777766653
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=515.10 Aligned_cols=524 Identities=18% Similarity=0.163 Sum_probs=450.0
Q ss_pred EECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCC
Q 040849 80 LLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNEL 159 (809)
Q Consensus 80 l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 159 (809)
++.++.+++ .+|..+. ++|++|||++|.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+
T Consensus 16 ~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 445555555 3555554 7899999999999999999999999999999999999999899999999999999999999
Q ss_pred CCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccc-cCcccccCCCCccEEEeecCcCCCCcchh
Q 040849 160 VGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVG-QIPKTLSQLKRMRFIGFGVNKLSGEIPFS 238 (809)
Q Consensus 160 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 238 (809)
++..|..|+++++|++|+|++|++++..+..|+++++|++|++++|++++ .+|..|+++++|++|++++|++++..+..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 99889999999999999999999998888899999999999999999986 57999999999999999999999988888
Q ss_pred ccCCCCCc----eeccCCcccccccChhhhcCCCCCcEEEccCcccc-ccCCcccccCCCCceEecCCCcceeeC--C--
Q 040849 239 IYNLSSLN----YFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFT-GPIPASISNASHLMRLTIPINGFSGKV--P-- 309 (809)
Q Consensus 239 l~~l~~L~----~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~--~-- 309 (809)
+..+++|+ +|+++.|.+++ +|...+ ...+|+.|++++|.++ +..|..+.+++.++.+++..+.+.+.. +
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDF-IQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCE-ECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhccccccceeeccCCCcce-eCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 88877765 79999999984 555554 3458999999999987 467888999999999888655543211 1
Q ss_pred --C-CCCCC--CCcEEEe-ccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCccc
Q 040849 310 --S-FGNLH--KLQWVSI-SMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLF 383 (809)
Q Consensus 310 --~-~~~l~--~L~~L~L-s~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~ 383 (809)
. +..+. .++.+++ ..|.+.+..+ .+..+++|+.+++++|.+.. +| .+..+. +|+.|++++|++
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~-~L~~L~l~~n~l- 319 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIV-------KFHCLANVSAMSLAGVSIKY-LE-DVPKHF-KWQSLSIIRCQL- 319 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGG-------SCGGGTTCSEEEEESCCCCC-CC-CCCTTC-CCSEEEEESCCC-
T ss_pred ChHHhhhhhhccHhheecccccccccccc-------ccccCCCCCEEEecCccchh-hh-hccccc-cCCEEEcccccC-
Confidence 1 22232 3445555 4555554322 26778899999999999854 55 555554 599999999999
Q ss_pred ccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecc--cCcCCcCCCCccEEEcccccCcccCCcc
Q 040849 384 GNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGE--IPSSIGNLTLLITLSFDKNMLEGSIPSS 461 (809)
Q Consensus 384 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 461 (809)
+.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|..
T Consensus 320 ~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~ 394 (606)
T 3vq2_A 320 KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394 (606)
T ss_dssp SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence 6778 45 9999999999999766544 677999999999999999977 48889999999999999999985 5688
Q ss_pred ccCCCCCcEEeCcCCcCccccC-cchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccccc-ccCccccCCC
Q 040849 462 LGKCQNLILLGLSNNNLTGTIP-TEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSG-EIPNSLGSCV 539 (809)
Q Consensus 462 l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~ 539 (809)
+..+++|+.|++++|++++..| ..+..+++| +.|++++|++++..|..+..+++|++|++++|++++ .+|..|+.++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 9999999999999999998877 688899999 899999999999999999999999999999999998 4899999999
Q ss_pred CCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC-CCCC-CCCcccc
Q 040849 540 RLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK-GVFS-NSSAVSL 617 (809)
Q Consensus 540 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~-~~~~-~~~~~~~ 617 (809)
+|++|+|++|++++.+|..|.++++|+.|++++|++++.+|..|.++++|++|++++|+++ .+|.. ..+. ++..+++
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999 45543 2333 4778899
Q ss_pred cCCCCCCCC
Q 040849 618 DGNDNLCGG 626 (809)
Q Consensus 618 ~~n~~lc~~ 626 (809)
.+|+..|..
T Consensus 553 ~~N~~~c~c 561 (606)
T 3vq2_A 553 TNNSVACIC 561 (606)
T ss_dssp CSCCCCCSS
T ss_pred cCCCcccCC
Confidence 999998854
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-54 Score=522.84 Aligned_cols=521 Identities=22% Similarity=0.236 Sum_probs=448.7
Q ss_pred EECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccC-CccccCCCcCcEEEcccCC
Q 040849 80 LLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQI-PDNISHCVNLESLRLGFNE 158 (809)
Q Consensus 80 l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~ 158 (809)
.+.++++++. +|. -.++|++|||++|.+++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.
T Consensus 9 ~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 4556666765 444 4579999999999999999999999999999999999776666 7889999999999999999
Q ss_pred CCCCCcccccCCCCCCEEEcccccCcccCCcc--CCCCCCCCEEEcccCcccccCc-ccccCCCCccEEEeecCcCCCCc
Q 040849 159 LVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSS--FGNLSSLEVLSASANQFVGQIP-KTLSQLKRMRFIGFGVNKLSGEI 235 (809)
Q Consensus 159 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~ 235 (809)
+.+..|..|+++++|++|+|++|.+++..|.. |+++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 99999999999999999999999999877665 9999999999999999998765 57999999999999999999999
Q ss_pred chhccCC--CCCceeccCCcccccccChhhhcCCC------CCcEEEccCccccccCCcccccC---CCCceEecCCCcc
Q 040849 236 PFSIYNL--SSLNYFEFPVNQLQGSLPSDLGFTLP------NLERLNLGENQFTGPIPASISNA---SHLMRLTIPINGF 304 (809)
Q Consensus 236 ~~~l~~l--~~L~~L~l~~n~l~~~~p~~~~~~l~------~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~l~~n~l 304 (809)
+..+..+ ++|+.|+++.|.+.+..|..+. .++ .|+.|++++|.+++..+..+... .++..+.++.+..
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 9999888 8999999999999988887654 344 39999999999998888877654 5677888764332
Q ss_pred ---------eeeCCC-CCCC--CCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccC
Q 040849 305 ---------SGKVPS-FGNL--HKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRL 372 (809)
Q Consensus 305 ---------~~~~~~-~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L 372 (809)
.+..+. |..+ ++|+.|++++|.+.+..+ ..+..+++|+.|+++.|.+.+..|..+..+. +|
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L 316 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNKINKIADEAFYGLD-NL 316 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SC
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccCh------hhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CC
Confidence 222122 4443 789999999999987544 3456788999999999999999998888876 49
Q ss_pred cEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccc
Q 040849 373 RILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452 (809)
Q Consensus 373 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 452 (809)
++|++++|++.+..|..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++. ..+++|+.|++++|
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGN 391 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESC
T ss_pred CEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCC
Confidence 9999999999999899999999999999999999988888999999999999999999843 33789999999999
Q ss_pred cCcccCCccccCCCCCcEEeCcCCcCcccc-CcchhcccCCceEEEccCCcCcccCCC-CccCCCCCCEEEccccccc--
Q 040849 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTI-PTEVIGLSSLSIYLDLSQNQLNGTLPS-NFGILKNLGVLDVSENKLS-- 528 (809)
Q Consensus 453 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~l~~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-- 528 (809)
+++ .+|.. ..+++.|++++|++++.. +..+.++++| +.|+|++|++++..+. .+..+++|+.|+|++|.++
T Consensus 392 ~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 392 KLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp CCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred Ccc-ccccc---ccccceeecccCccccCchhhhhhcCCcc-ceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 998 44543 468999999999998632 2234578888 7999999999976543 4667899999999999997
Q ss_pred ---cccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCC
Q 040849 529 ---GEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 529 ---~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
+..|..|.++++|+.|+|++|++++.+|..|.++++|+.|||++|++++.+|..+. ++|+.|++++|+++|.+|.
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence 45567799999999999999999999999999999999999999999998888877 8999999999999999885
Q ss_pred CCCCCCCCcccccCCCCCCCC
Q 040849 606 KGVFSNSSAVSLDGNDNLCGG 626 (809)
Q Consensus 606 ~~~~~~~~~~~~~~n~~lc~~ 626 (809)
.+..+...++.+||..|..
T Consensus 545 --~~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 545 --VFVSLSVLDITHNKFICEC 563 (844)
T ss_dssp --CCSSCCEEEEEEECCCCSS
T ss_pred --HhCCcCEEEecCCCccccc
Confidence 3678888999999999953
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-53 Score=486.55 Aligned_cols=497 Identities=21% Similarity=0.223 Sum_probs=353.9
Q ss_pred CCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCc
Q 040849 62 FCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD 141 (809)
Q Consensus 62 ~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 141 (809)
.|.|.|| |+.. ++.++ .+|+.+. ++|++|||++|.+++..|..|+++++|++|+|++|++++..|.
T Consensus 3 ~C~~~~~-c~~~----------~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDGR----------SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EECT----------TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EECC----------CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4999998 8643 33343 4566554 7899999999999998899999999999999999999998889
Q ss_pred cccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcc-cCCccCCCCCCCCEEEcccCcccccC-cccccCCC
Q 040849 142 NISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSG-QIPSSFGNLSSLEVLSASANQFVGQI-PKTLSQLK 219 (809)
Q Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~ 219 (809)
.|.++++|++|+|++|.+++..|..|+++++|++|+|++|++++ ..|..++++++|++|++++|++.+.+ +..|.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999998888889999999999999999986 45778999999999999999854444 46899999
Q ss_pred CccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccC--C-cccccCCCCce
Q 040849 220 RMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPI--P-ASISNASHLMR 296 (809)
Q Consensus 220 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~--p-~~l~~l~~L~~ 296 (809)
+|++|++++|.+++..|..+..+++|++|+++.|.+. .+|..+...+++|++|++++|++++.. | .....+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 9999999999999999999999999999999999886 667666557899999999999998742 2 22345678889
Q ss_pred EecCCCcceeeCCC-----CCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhcccc
Q 040849 297 LTIPINGFSGKVPS-----FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTR 371 (809)
Q Consensus 297 L~l~~n~l~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~ 371 (809)
|++++|.+++..+. +..+++|+.++++.|.+.+...........+..+.+++.+++..+.+.....
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--------- 298 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--------- 298 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG---------
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh---------
Confidence 99988888764332 4567788888888887765432111111223344455555555544322100
Q ss_pred CcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccc-cCCCCCCEEEeeCCeeecccC---cCCcCCCCccEE
Q 040849 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSI-GDLHKLQRLGLQGNKFLGEIP---SSIGNLTLLITL 447 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L 447 (809)
...++..+...++|++|++++|.++ .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|
T Consensus 299 -----------~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 299 -----------FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp -----------SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred -----------cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 0001111223344555555555554 333333 345555555555555554432 224455555555
Q ss_pred EcccccCcccCC--ccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccc
Q 040849 448 SFDKNMLEGSIP--SSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSEN 525 (809)
Q Consensus 448 ~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 525 (809)
++++|++++..+ ..+..+++|++||+++|+++ .+|..+..+++| ++|++++|++++ +|..+ .++|++|||++|
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N 441 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIRV-VKTCI--PQTLEVLDVSNN 441 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCSC-CCTTS--CTTCSEEECCSS
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCccc-ccchh--cCCceEEECCCC
Confidence 555555554322 33555566666666666665 455555555555 566666666653 23222 257888888888
Q ss_pred ccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCC
Q 040849 526 KLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 526 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
++++.+ ..+++|++|+|++|+++ .+|. ...+++|++|||++|++++.+|..|..+++|++|++++|++.|.+|.
T Consensus 442 ~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 442 NLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred Chhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 887643 46788888888888888 5665 46788888888888888888888888888899999999988887773
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-52 Score=480.60 Aligned_cols=490 Identities=19% Similarity=0.193 Sum_probs=371.5
Q ss_pred CCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEc
Q 040849 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAV 178 (809)
Q Consensus 99 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 178 (809)
+++++|||++|.+++..+.+|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35677777777777666667777777777777777777666666777777777777777776666666777777777777
Q ss_pred ccccCcccCCccCCCCCCCCEEEcccCcccc-cCcccccCCCCccEEEeecCcCCCCcchhccCCCCC----ceeccCCc
Q 040849 179 HYNNLSGQIPSSFGNLSSLEVLSASANQFVG-QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSL----NYFEFPVN 253 (809)
Q Consensus 179 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n 253 (809)
++|++++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..+..+++| +.++++.|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7777765555557777777777777777765 356677777777777777777776666666666666 66777777
Q ss_pred ccccccChhhhcCCCCCcEEEccCccccc-cCCcccccCCCCceEecCCCccee-----eCC-C-CCCCCC--CcEEEec
Q 040849 254 QLQGSLPSDLGFTLPNLERLNLGENQFTG-PIPASISNASHLMRLTIPINGFSG-----KVP-S-FGNLHK--LQWVSIS 323 (809)
Q Consensus 254 ~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~l~~n~l~~-----~~~-~-~~~l~~--L~~L~Ls 323 (809)
.+++..|..+. ..+|+.|++++|.... .++..+..++.++.+.+....+.. .++ . +..+++ ++.++++
T Consensus 188 ~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 188 PMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 77654444432 2367777777764332 234445555555555443222211 111 1 333333 3445555
Q ss_pred cc-cCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCC
Q 040849 324 MN-HLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLE 402 (809)
Q Consensus 324 ~n-~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 402 (809)
.+ .+.+..+ ..+..+++|+.++++.|.+. .+|..+... +|+.|++++|.+. .+|. ..+++|++|+++
T Consensus 266 ~~~~~~~~~~------~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~ 333 (570)
T 2z63_A 266 YLDYYLDDII------DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT 333 (570)
T ss_dssp ETTEEESCST------TTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE
T ss_pred cchhhhhhch------hhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCc
Confidence 54 3333222 34456778888888888877 467777666 5999999999998 5554 578899999999
Q ss_pred CccceecCCccccCCCCCCEEEeeCCeeeccc--CcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCcc
Q 040849 403 GNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEI--PSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTG 480 (809)
Q Consensus 403 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 480 (809)
+|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|.+.+..+. +..+++|+.|++++|++++
T Consensus 334 ~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 334 SNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp SCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred CCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 9998876665 78899999999999998664 67788999999999999999876555 9999999999999999997
Q ss_pred ccC-cchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccc-cccCccccCCCCCCEEeCcCCccccccchh
Q 040849 481 TIP-TEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLS-GEIPNSLGSCVRLEQLGMNGNFFQGNIPSS 558 (809)
Q Consensus 481 ~~p-~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 558 (809)
..| ..+..+++| ++|++++|++++..|..+..+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..
T Consensus 411 ~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 411 MSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp CTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 766 567888999 79999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred hcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC
Q 040849 559 FSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK 606 (809)
Q Consensus 559 ~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~ 606 (809)
|.++++|+.|++++|++++.+|..|.++++|++|++++|+++|.+|..
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999999999999999999999999999999999998864
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-50 Score=465.34 Aligned_cols=509 Identities=23% Similarity=0.235 Sum_probs=430.0
Q ss_pred cEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccc
Q 040849 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN 181 (809)
Q Consensus 102 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 181 (809)
+..+.++.+++ .+|..+. +++++|+|++|.+++..+.+|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 34555665665 4666553 57999999999999988889999999999999999999888889999999999999999
Q ss_pred cCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCC-CcchhccCCCCCceeccCCcccccccC
Q 040849 182 NLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSG-EIPFSIYNLSSLNYFEFPVNQLQGSLP 260 (809)
Q Consensus 182 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p 260 (809)
++++..|..|+++++|++|++++|++++..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 9998888999999999999999999998777679999999999999999987 479999999999999999999997666
Q ss_pred hhhhcCCCCC----cEEEccCccccccCCcccccCCCCceEecCCCcceee-CCC-CCCCCCCcEEEeccccCCCCCCC-
Q 040849 261 SDLGFTLPNL----ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGK-VPS-FGNLHKLQWVSISMNHLGNGEKD- 333 (809)
Q Consensus 261 ~~~~~~l~~L----~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~-~~~l~~L~~L~Ls~n~l~~~~~~- 333 (809)
..+. .+++| +.+++++|.+++..|..+... +|+.|++++|..... .+. +..++.++.+.+....+......
T Consensus 167 ~~~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 167 TDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGGH-HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HHcc-chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 6665 56677 899999999998888887766 799999998854321 122 56677777777765544332110
Q ss_pred --chhhhhcccccCCccEEecccc-ccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecC
Q 040849 334 --DLEFVNSLVNASRLELLGININ-NFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRI 410 (809)
Q Consensus 334 --~~~~~~~l~~~~~L~~L~l~~n-~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 410 (809)
....+..+..+ .++.++++.+ .+.+..|..+..+. +|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+
T Consensus 245 ~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l 319 (570)
T 2z63_A 245 KFDKSALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QF 319 (570)
T ss_dssp ECCTTTTGGGGGS-EEEEEEEEETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SC
T ss_pred hcchhhhcccccc-chhhhhhhcchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-cc
Confidence 00111122222 3667777777 77888888887775 4999999999998 578888888 9999999999998 55
Q ss_pred CccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccC--CccccCCCCCcEEeCcCCcCccccCcchhc
Q 040849 411 PGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSI--PSSLGKCQNLILLGLSNNNLTGTIPTEVIG 488 (809)
Q Consensus 411 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 488 (809)
|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. |..+..+++|++|++++|++++. |..+..
T Consensus 320 ~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~ 394 (570)
T 2z63_A 320 PT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLG 394 (570)
T ss_dssp CB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEET
T ss_pred Cc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccc
Confidence 55 5789999999999999877765 78899999999999998764 77889999999999999999964 444889
Q ss_pred ccCCceEEEccCCcCcccCC-CCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccc-cccchhhcCCCCCC
Q 040849 489 LSSLSIYLDLSQNQLNGTLP-SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQ-GNIPSSFSSLRGIE 566 (809)
Q Consensus 489 l~~l~~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~ 566 (809)
++++ +.|++++|++++..| ..+..+++|++|++++|++++..|..+.++++|++|++++|.++ +.+|..|..+++|+
T Consensus 395 l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 395 LEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp CTTC-CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred cCCC-CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 9999 899999999998776 57899999999999999999999999999999999999999998 68999999999999
Q ss_pred EEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC-CCCCCCCcccccCCCCCCCC
Q 040849 567 NLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK-GVFSNSSAVSLDGNDNLCGG 626 (809)
Q Consensus 567 ~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~~ 626 (809)
.||+++|++++.+|..|..+++|++|++++|++++.+|.. ..+..+..+++.+|+..|..
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9999999999999999999999999999999999877643 45667788899999987753
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-51 Score=467.98 Aligned_cols=480 Identities=20% Similarity=0.212 Sum_probs=372.7
Q ss_pred ccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEccc
Q 040849 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHY 180 (809)
Q Consensus 101 L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 180 (809)
..+.|+++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 344688889988 5676654 7899999999999988888999999999999999999988888999999999999999
Q ss_pred ccCcccCCccCCCCCCCCEEEcccCcccc-cCcccccCCCCccEEEeecCcCCCCcc-hhccCCCCCceeccCCcccccc
Q 040849 181 NNLSGQIPSSFGNLSSLEVLSASANQFVG-QIPKTLSQLKRMRFIGFGVNKLSGEIP-FSIYNLSSLNYFEFPVNQLQGS 258 (809)
Q Consensus 181 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 258 (809)
|++++..|..|+++++|++|++++|++++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 99998888889999999999999999986 356788999999999999998554544 5778888888888888888877
Q ss_pred cChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeC----CCCCCCCCCcEEEeccccCCCCCCCc
Q 040849 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKV----PSFGNLHKLQWVSISMNHLGNGEKDD 334 (809)
Q Consensus 259 ~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~ 334 (809)
.|..+. .+++|+.|+++.|.+....+..+..+++|+.|++++|.+++.. +....+++
T Consensus 164 ~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~------------------ 224 (549)
T 2z81_A 164 QSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP------------------ 224 (549)
T ss_dssp CTTTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC------------------
T ss_pred Chhhhh-ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhc------------------
Confidence 777766 6777888888877765322222344666777777766665531 11233444
Q ss_pred hhhhhcccccCCccEEeccccccccccchhhhh---ccccCcEEEccCCcccccC------CccccCCCCCCeeeCCCcc
Q 040849 335 LEFVNSLVNASRLELLGININNFGGMLPEAVGN---LSTRLRILRVGNNQLFGNI------PSGLRNLVNLERLLLEGNQ 405 (809)
Q Consensus 335 ~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~---~~~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~Ls~N~ 405 (809)
|+.|+++.|.+.+..+..+.. ...+|+.+++++|.+.+.. ...+..+++|+.|++.++.
T Consensus 225 ------------L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 292 (549)
T 2z81_A 225 ------------MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292 (549)
T ss_dssp ------------CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB
T ss_pred ------------ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc
Confidence 444555555444443333321 1234777777777776531 2345678889999999887
Q ss_pred ceecC-----CccccCCCCCCEEEeeCCeeecccCcCC-cCCCCccEEEcccccCcccCC---ccccCCCCCcEEeCcCC
Q 040849 406 FTGRI-----PGSIGDLHKLQRLGLQGNKFLGEIPSSI-GNLTLLITLSFDKNMLEGSIP---SSLGKCQNLILLGLSNN 476 (809)
Q Consensus 406 l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N 476 (809)
+.... +..+...++|+.|++++|++. .+|..+ ..+++|++|++++|++++.+| ..+..+++|++|++++|
T Consensus 293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp CSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred cchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 65321 222334578999999999987 566665 579999999999999998764 34788999999999999
Q ss_pred cCccccC--cchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccc
Q 040849 477 NLTGTIP--TEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554 (809)
Q Consensus 477 ~l~~~~p--~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 554 (809)
++++..+ ..+..+++| ++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|+|++|++++.
T Consensus 372 ~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 372 HLRSMQKTGEILLTLKNL-TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF 446 (549)
T ss_dssp CCCCHHHHHHHGGGCTTC-CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC
T ss_pred cccccccchhhhhcCCCC-CEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh
Confidence 9986432 457889999 79999999999 67888999999999999999998 455544 26899999999999975
Q ss_pred cchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC-CCCCCCCcccccCCCCCCCC
Q 040849 555 IPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK-GVFSNSSAVSLDGNDNLCGG 626 (809)
Q Consensus 555 ~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~~ 626 (809)
+ ..+++|++|||++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+...++.+|+..|..
T Consensus 447 ~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 447 S----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp C----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred c----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 4 57899999999999999 5676 568999999999999999987752 45677888999999988853
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-49 Score=459.69 Aligned_cols=485 Identities=22% Similarity=0.216 Sum_probs=267.7
Q ss_pred CccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 040849 100 FLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVH 179 (809)
Q Consensus 100 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 179 (809)
++++|||++|+|++..|.+|.++++|++|||++|+|++..|.+|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 56777777777776666677777777777777777776666677777777777777777776666667777777777777
Q ss_pred cccCcccCCccCCCCCCCCEEEcccCcccc-cCcccccCCCCccEEEeecCcCCCCcchhccCCCCCc----eeccCCcc
Q 040849 180 YNNLSGQIPSSFGNLSSLEVLSASANQFVG-QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLN----YFEFPVNQ 254 (809)
Q Consensus 180 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n~ 254 (809)
+|++++..+..|+++++|++|++++|++++ ..|..++.+++|++|++++|++++..+..+..+.+++ .++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 777776666667777777777777777764 3456667777777777777777776666666554433 45666666
Q ss_pred cccccChhhhcCCCCCcEEEccCcccccc-CCcccccCCCCceEecCCCcc-----------------------------
Q 040849 255 LQGSLPSDLGFTLPNLERLNLGENQFTGP-IPASISNASHLMRLTIPINGF----------------------------- 304 (809)
Q Consensus 255 l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~n~l----------------------------- 304 (809)
+.. ++.... ....++.+++.+|..... .+..+..+..++...+..+..
T Consensus 213 l~~-i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 213 MNF-IQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCE-ECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred ccc-cCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 663 333322 234455666666644322 222333444444333322111
Q ss_pred -----eeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccC
Q 040849 305 -----SGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGN 379 (809)
Q Consensus 305 -----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~ 379 (809)
.+....+..+.+++.+++..+.+... ..+.....++.+++..|.+.+..+..+ ..|+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~L~~l~l~~ 358 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--------KDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTS 358 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--------GGGGSCCCCSEEEEESCEESSCCCCBC----TTCCEEEEES
T ss_pred hcccccchhhhhhhhcccccccccccccccc--------cccccchhhhhhhcccccccCcCcccc----hhhhhccccc
Confidence 11111133333444444443333221 112223344555555544443322211 2245555555
Q ss_pred CcccccCCccccCCCCCCeeeCCCccce--ecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCccc
Q 040849 380 NQLFGNIPSGLRNLVNLERLLLEGNQFT--GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGS 457 (809)
Q Consensus 380 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 457 (809)
|.+... .....+++|+.|++++|.+. +..+..+..+.+|++|+++.|.+.+ .+..+..+++|+.++++.|.....
T Consensus 359 n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 359 NKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp CCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEEST
T ss_pred ccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccc
Confidence 544322 22334555555555555553 2233344455555555555555543 233445555555555555554433
Q ss_pred CC-ccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcC-cccCCCCccCCCCCCEEEccccccccccCccc
Q 040849 458 IP-SSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQL-NGTLPSNFGILKNLGVLDVSENKLSGEIPNSL 535 (809)
Q Consensus 458 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 535 (809)
.+ ..+..+++++.++++.|++.+..|..+..++.+ +.|++++|++ .+..|..|..+++|++|||++|++++..|..|
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccccccccccccccccccccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 32 334555555555555555555555555555555 4555555543 23345555555555555555555555555555
Q ss_pred cCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccC-CCCCeEEccCCccccc
Q 040849 536 GSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENF-LFLQNLNLSFNHFEGE 602 (809)
Q Consensus 536 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l-~~L~~l~ls~N~l~g~ 602 (809)
.++++|++|+|++|+|++..|..|.++++|++|||++|+|++.+|..|..+ ++|++|++++|+|++.
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 555555555555555555555555555555555555555555555555555 3555555555555543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-49 Score=450.73 Aligned_cols=463 Identities=20% Similarity=0.239 Sum_probs=352.7
Q ss_pred cEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccc
Q 040849 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN 181 (809)
Q Consensus 102 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 181 (809)
++||+++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999998 5777666 88999999999998877788889999999999999998888888889999999999999
Q ss_pred cCcccCCccCCCCCCCCEEEcccCcccc-cCcccccCCCCccEEEeecCcCCCCcchhccCCCCC--ceeccCCccc--c
Q 040849 182 NLSGQIPSSFGNLSSLEVLSASANQFVG-QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSL--NYFEFPVNQL--Q 256 (809)
Q Consensus 182 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~ 256 (809)
+++ .+|.. .+++|++|++++|++++ .+|..|+++++|++|++++|.+++ ..+..+++| +.|+++.|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 888 45655 78889999999998887 467888888888888888888875 344555555 6666666666 4
Q ss_pred cccChhhhcCCC-CCcEEEccCccccccCCc-ccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCc
Q 040849 257 GSLPSDLGFTLP-NLERLNLGENQFTGPIPA-SISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDD 334 (809)
Q Consensus 257 ~~~p~~~~~~l~-~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 334 (809)
+..|..+. .+. +...+++++|.+.+.++. . +..+++|+.++++.|.........
T Consensus 154 ~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~-----------------------~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 154 KEDPEGLQ-DFNTESLHIVFPTNKEFHFILDVS-----------------------VKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp SCCTTTTT-TCCEEEEEEECCSSSCCCCCCCCC-----------------------CTTCSEEEECCEEECCSTTTTHHH
T ss_pred cccccccc-ccccceEEEEeccCcchhhhhhhh-----------------------hhcccceeecccccccccccccee
Confidence 44454433 111 122344444444433322 2 444555555555554311100000
Q ss_pred hhhhhcccccCCccEEeccccccccccchhhhhc--cccCcEEEccCCcccccCCccc-----cCCCCCCeeeCCCccce
Q 040849 335 LEFVNSLVNASRLELLGININNFGGMLPEAVGNL--STRLRILRVGNNQLFGNIPSGL-----RNLVNLERLLLEGNQFT 407 (809)
Q Consensus 335 ~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~--~~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~ 407 (809)
......+..+++|+.++++.|.+.+..+..+... .++|++|++++|++.|.+|..+ .++++|+.+++++|.+
T Consensus 210 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 1112244555666666666666655433322211 2369999999999998899888 8999999999999998
Q ss_pred ecCC-ccccCC---CCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCcc--c
Q 040849 408 GRIP-GSIGDL---HKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTG--T 481 (809)
Q Consensus 408 ~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ 481 (809)
.+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..+.++++|++|++++|++++ .
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred -ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 455 444444 67999999999986432 12678999999999999999899999999999999999999996 6
Q ss_pred cCcchhcccCCceEEEccCCcCcccCCC-CccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhc
Q 040849 482 IPTEVIGLSSLSIYLDLSQNQLNGTLPS-NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFS 560 (809)
Q Consensus 482 ~p~~~~~l~~l~~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 560 (809)
+|..+..+++| ++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+.
T Consensus 366 ~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 366 IAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp HHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred chHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 67888999999 7999999999985554 588899999999999999998888775 79999999999999 7888888
Q ss_pred CCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCC
Q 040849 561 SLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 561 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
.+++|++||+++|+++...+..|..+++|++|++++|++++.++.
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999999999999964444599999999999999999987663
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-50 Score=466.89 Aligned_cols=452 Identities=20% Similarity=0.262 Sum_probs=372.7
Q ss_pred CCccEEeCCCCCCCccCCccccccccCCccccCCCcC------cc------cCCccccCCCcCcEEEcccCCCCCCCccc
Q 040849 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTF------GG------QIPDNISHCVNLESLRLGFNELVGKVPRK 166 (809)
Q Consensus 99 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l------~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 166 (809)
.+++.|+|++|.++|.+|.+|+++++|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4789999999999999999999999999999999977 22 344433 45666 788888887777766
Q ss_pred ccC-CCCCCEEEcccccCcccCCccCCCCCCCCEEEc--ccCcccccCcccccCCCCccEEEeecCcCCCC---------
Q 040849 167 LGS-LSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA--SANQFVGQIPKTLSQLKRMRFIGFGVNKLSGE--------- 234 (809)
Q Consensus 167 l~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L--s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------- 234 (809)
+.. +.++..+++....+.. .....++.+.+ ..|++++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 653 2233333333332221 12223333333 3688999 899999999999999999999996
Q ss_pred --------cchhcc--CCCCCceeccCCcccccccChhhhcCCCCCcEEEccCcc-ccc-cCCcccccC------CCCce
Q 040849 235 --------IPFSIY--NLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQ-FTG-PIPASISNA------SHLMR 296 (809)
Q Consensus 235 --------~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~ 296 (809)
+|..++ ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ .+|..+..+ ++|+.
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 899999 999999999999999999998887 89999999999998 998 889887765 45555
Q ss_pred EecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccch--hhhhccccCcE
Q 040849 297 LTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPE--AVGNLSTRLRI 374 (809)
Q Consensus 297 L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~--~~~~~~~~L~~ 374 (809)
|++++|+++ .+|. .+..+. +|++
T Consensus 310 L~L~~n~l~------------------------------------------------------~ip~~~~l~~l~-~L~~ 334 (636)
T 4eco_A 310 IYIGYNNLK------------------------------------------------------TFPVETSLQKMK-KLGM 334 (636)
T ss_dssp EECCSSCCS------------------------------------------------------SCCCHHHHTTCT-TCCE
T ss_pred EECCCCcCC------------------------------------------------------ccCchhhhccCC-CCCE
Confidence 555444443 3343 444443 3888
Q ss_pred EEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCC-CCEEEeeCCeeecccCcCCcCCC--CccEEEccc
Q 040849 375 LRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHK-LQRLGLQGNKFLGEIPSSIGNLT--LLITLSFDK 451 (809)
Q Consensus 375 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~ 451 (809)
|++++|++.|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|++|++++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence 8888999988888 8999999999999999999 88889999999 999999999999 7888887765 899999999
Q ss_pred ccCcccCCcccc-------CCCCCcEEeCcCCcCccccCcchh-cccCCceEEEccCCcCcccCCC-CccCCC-------
Q 040849 452 NMLEGSIPSSLG-------KCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQLNGTLPS-NFGILK------- 515 (809)
Q Consensus 452 N~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~l~~~L~Ls~N~l~~~~p~-~~~~l~------- 515 (809)
|.+++.+|..+. .+++|++|++++|+++ .+|..+. .++++ ++|+|++|+++ .+|. .+....
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL-SSINLMGNMLT-EIPKNSLKDENENFKNTY 488 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCC-SEEECCSSCCS-BCCSSSSEETTEECTTGG
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCC-CEEECCCCCCC-CcCHHHhccccccccccC
Confidence 999999999998 8889999999999999 5666554 58888 79999999999 5554 443332
Q ss_pred CCCEEEccccccccccCcccc--CCCCCCEEeCcCCccccccchhhcCCCCCCEEeC------CCCCcccccccccccCC
Q 040849 516 NLGVLDVSENKLSGEIPNSLG--SCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDL------SRNNLSGRIPKYFENFL 587 (809)
Q Consensus 516 ~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL------s~N~l~~~~p~~~~~l~ 587 (809)
+|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..+.+++
T Consensus 489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 9999999999999 7888887 99999999999999998 8999999999999999 56889999999999999
Q ss_pred CCCeEEccCCcccccCCCCCCCCCCCcccccCCCCCCCC
Q 040849 588 FLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGG 626 (809)
Q Consensus 588 ~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~ 626 (809)
+|++|++++|++ +.+|.. .+..+...++.+|+..|-.
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp SCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred CCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence 999999999999 788865 4477888889999877743
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=454.18 Aligned_cols=458 Identities=20% Similarity=0.224 Sum_probs=355.5
Q ss_pred EEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccC
Q 040849 78 TALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFN 157 (809)
Q Consensus 78 ~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 157 (809)
+.+|++++.++ .+|..+. ++|++|||++|.+++..|..|+++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 35899999999 5887776 89999999999999988899999999999999999999988999999999999999999
Q ss_pred CCCCCCcccccCCCCCCEEEcccccCcc-cCCccCCCCCCCCEEEcccCcccccCcccccCCCCc--cEEEeecCcC--C
Q 040849 158 ELVGKVPRKLGSLSKLRTLAVHYNNLSG-QIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRM--RFIGFGVNKL--S 232 (809)
Q Consensus 158 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~L~~n~l--~ 232 (809)
+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|++++ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56666 89999999999999997 578999999999999999999986 456777777 9999999999 8
Q ss_pred CCcchhccCCC-CCceeccCCcccccccChhhhcCCCCCcEEEccCcc-------ccccCCcccccCCCCceEecCCCcc
Q 040849 233 GEIPFSIYNLS-SLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQ-------FTGPIPASISNASHLMRLTIPINGF 304 (809)
Q Consensus 233 ~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~-------l~~~~p~~l~~l~~L~~L~l~~n~l 304 (809)
+..|..+..++ ....++++.|.+.+.++......+++|+.+++++|. +.+.+| .+..+++|+.|+++.|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 88888888776 344678899999888887766689999999999997 665555 667777777777777666
Q ss_pred eeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhh-----hhccccCcEEEccC
Q 040849 305 SGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAV-----GNLSTRLRILRVGN 379 (809)
Q Consensus 305 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~-----~~~~~~L~~L~Ls~ 379 (809)
++..+. ........++|+.|++++|.+.|.+|..+ ..+. .|+.+++++
T Consensus 233 ~~~~~~--------------------------~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~-~L~~l~l~~ 285 (520)
T 2z7x_B 233 TWNSFI--------------------------RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK-ALSIHQVVS 285 (520)
T ss_dssp EHHHHH--------------------------HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC-EEEEEEEEE
T ss_pred CHHHHH--------------------------HHHHHhhhCcccEEEeecccccCccccchhhcccccCc-eeEeccccc
Confidence 542211 00000112345555555555555555554 3333 366666666
Q ss_pred CcccccCC-ccccCC---CCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCc
Q 040849 380 NQLFGNIP-SGLRNL---VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLE 455 (809)
Q Consensus 380 n~l~~~~p-~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 455 (809)
|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus 286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 361 (520)
T 2z7x_B 286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361 (520)
T ss_dssp CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred cce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence 666 334 334333 56777777777665322 1256777777888888777777777777778888888888877
Q ss_pred c--cCCccccCCCCCcEEeCcCCcCccccCcc-hhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccC
Q 040849 456 G--SIPSSLGKCQNLILLGLSNNNLTGTIPTE-VIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532 (809)
Q Consensus 456 ~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 532 (809)
+ .+|..+..+++|++|++++|++++.+|.. +..++++ +.|++++|++++..|..+. ++|+.|||++|+++ .+|
T Consensus 362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip 437 (520)
T 2z7x_B 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL-LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP 437 (520)
T ss_dssp BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC-CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCC
T ss_pred ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC-CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccc
Confidence 5 45566778888888888888887656654 6667777 6888888888877776654 78999999999998 788
Q ss_pred ccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccc
Q 040849 533 NSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP 580 (809)
Q Consensus 533 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 580 (809)
..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 888899999999999999995444449999999999999999987665
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-47 Score=443.26 Aligned_cols=498 Identities=22% Similarity=0.198 Sum_probs=397.2
Q ss_pred cCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCC
Q 040849 114 EIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGN 193 (809)
Q Consensus 114 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 193 (809)
.+|..+. +.+++|||++|+|++..|.+|.++++|++|||++|++++..|++|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 3555442 47999999999999888889999999999999999999888889999999999999999999888889999
Q ss_pred CCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCC-cchhccCCCCCceeccCCcccccccChhhhcCCC----
Q 040849 194 LSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGE-IPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLP---- 268 (809)
Q Consensus 194 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~---- 268 (809)
+++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|++++..|..+. .+.
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~l~~ 201 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPL 201 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTT
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc-chhhhhh
Confidence 99999999999999988888899999999999999999864 688899999999999999999977676654 233
Q ss_pred CCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC--CCCCCCCcEEEeccccCCCCCCC------chhh---
Q 040849 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS--FGNLHKLQWVSISMNHLGNGEKD------DLEF--- 337 (809)
Q Consensus 269 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~------~~~~--- 337 (809)
....++++.|.++...+..+ ....+..+++..|......+. +..+..++...+..+........ .+..
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp CCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence 34579999999986555544 444577888888866543322 55666666666654433222110 0000
Q ss_pred ------------------hhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCee
Q 040849 338 ------------------VNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERL 399 (809)
Q Consensus 338 ------------------~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 399 (809)
...+.....++.+++..+.+....+ +.. ...++.|++.+|.+.+..+. .+..|+.+
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~-~~~L~~L~l~~~~~~~~~~~---~l~~L~~l 354 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSY-NFGWQHLELVNCKFGQFPTL---KLKSLKRL 354 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGS-CCCCSEEEEESCEESSCCCC---BCTTCCEE
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--ccc-chhhhhhhcccccccCcCcc---cchhhhhc
Confidence 0112233455566666555544322 111 23478888888887654433 45677888
Q ss_pred eCCCccceecCCccccCCCCCCEEEeeCCeee--cccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCc
Q 040849 400 LLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFL--GEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNN 477 (809)
Q Consensus 400 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 477 (809)
++..|.+... .....+++|+.|++++|.+. +..+..+..+.+|+.+++..|.+.. .+..+..+++|+.++++.|+
T Consensus 355 ~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 355 TFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp EEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSE
T ss_pred ccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcc
Confidence 8888877643 23457899999999999885 3456667788899999999999875 45678889999999999998
Q ss_pred CccccC-cchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccc-ccccCccccCCCCCCEEeCcCCcccccc
Q 040849 478 LTGTIP-TEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKL-SGEIPNSLGSCVRLEQLGMNGNFFQGNI 555 (809)
Q Consensus 478 l~~~~p-~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 555 (809)
.....+ ..+..+..+ ..++++.|++.+..+..+..++.|+.|+|++|++ .+..|..|..+++|++|+|++|++++.+
T Consensus 432 ~~~~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~ 510 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510 (635)
T ss_dssp EESTTSSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred cccccccccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC
Confidence 876554 456778888 7999999999999999999999999999999975 5568899999999999999999999999
Q ss_pred chhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCCC-C-CCCCCcccccCCCCCCC
Q 040849 556 PSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKG-V-FSNSSAVSLDGNDNLCG 625 (809)
Q Consensus 556 p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~-~-~~~~~~~~~~~n~~lc~ 625 (809)
|.+|.++++|++|+|++|+|++.+|..|.++++|++||+++|++++.+|..- . ..++..+++.+||+.|.
T Consensus 511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999999999999999999999999999999999999999888541 2 25678889999999995
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-48 Score=456.12 Aligned_cols=436 Identities=21% Similarity=0.249 Sum_probs=304.1
Q ss_pred CCccEEeCCCCCCCccCCccccccccCCcccc-CCCcCcccCCccccCC----CcCc--EEEc----------ccCCCCC
Q 040849 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWL-DNNTFGGQIPDNISHC----VNLE--SLRL----------GFNELVG 161 (809)
Q Consensus 99 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~l----~~L~--~L~L----------s~N~l~~ 161 (809)
.+++.|+|++|.++|.+|.+|++|++|++|+| ++|.++|..|...... ...+ .+.. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 9999988755332111 0000 0000 0000000
Q ss_pred -----------CCcccccCCCCCCEEEccc--ccCcccCCccCCCCCCCCEEEcccCcccc-----------------cC
Q 040849 162 -----------KVPRKLGSLSKLRTLAVHY--NNLSGQIPSSFGNLSSLEVLSASANQFVG-----------------QI 211 (809)
Q Consensus 162 -----------~~p~~l~~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~ 211 (809)
..+........++.+.++. |++++ +|..|+++++|++|+|++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111112223344444443 77777 77778888888888888888887 48
Q ss_pred ccccc--CCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcc-ccc-ccChhhh------cCCCCCcEEEccCcccc
Q 040849 212 PKTLS--QLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQ-LQG-SLPSDLG------FTLPNLERLNLGENQFT 281 (809)
Q Consensus 212 p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~p~~~~------~~l~~L~~L~Ls~N~l~ 281 (809)
|..++ ++++|++|+|++|.+.+.+|..+.++++|+.|++++|+ ++| .+|..++ ..+++|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88877 99999999999999999999999999999999999998 888 8887665 13458888888888888
Q ss_pred ccCCc--ccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEecccccccc
Q 040849 282 GPIPA--SISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGG 359 (809)
Q Consensus 282 ~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 359 (809)
.+|. .+.++++|+.|++++|.++ .+|.++.+++|+.|+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~-------------------------------------- 601 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLK-------------------------------------- 601 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEE--------------------------------------
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEE--------------------------------------
Confidence 7777 7888888888888887776 454555444444444
Q ss_pred ccchhhhhccccCcEEEccCCcccccCCccccCCCC-CCeeeCCCccceecCCccccCCCC--CCEEEeeCCeeecccCc
Q 040849 360 MLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVN-LERLLLEGNQFTGRIPGSIGDLHK--LQRLGLQGNKFLGEIPS 436 (809)
Q Consensus 360 ~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~ 436 (809)
+++|++. .+|..+..+++ |++|+|++|.++ .+|..+..++. |+.|++++|++.+.+|.
T Consensus 602 -----------------Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 602 -----------------LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp -----------------CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred -----------------CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 4444444 34444555555 666666666655 45555544433 66666666666555443
Q ss_pred CC---c--CCCCccEEEcccccCcccCCcc-ccCCCCCcEEeCcCCcCccccCcchhcc--------cCCceEEEccCCc
Q 040849 437 SI---G--NLTLLITLSFDKNMLEGSIPSS-LGKCQNLILLGLSNNNLTGTIPTEVIGL--------SSLSIYLDLSQNQ 502 (809)
Q Consensus 437 ~~---~--~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l--------~~l~~~L~Ls~N~ 502 (809)
.. . .+++|+.|++++|.++ .+|.. +..+++|+.|+|++|+++ .+|..+... ++| +.|+|++|+
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~ 739 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL-TTIDLRFNK 739 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC-CEEECCSSC
T ss_pred chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCc-cEEECCCCC
Confidence 21 1 2346667777777766 33433 346667777777777776 555544332 256 677777777
Q ss_pred CcccCCCCcc--CCCCCCEEEccccccccccCccccCCCCCCEEeCcC------CccccccchhhcCCCCCCEEeCCCCC
Q 040849 503 LNGTLPSNFG--ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNG------NFFQGNIPSSFSSLRGIENLDLSRNN 574 (809)
Q Consensus 503 l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~LdLs~N~ 574 (809)
++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|++ |++.+.+|..|.++++|+.|+|++|+
T Consensus 740 L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 740 LT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred Cc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 77 5666665 77788888888888876 677777888888887765 88999999999999999999999999
Q ss_pred cccccccccccCCCCCeEEccCCccccc
Q 040849 575 LSGRIPKYFENFLFLQNLNLSFNHFEGE 602 (809)
Q Consensus 575 l~~~~p~~~~~l~~L~~l~ls~N~l~g~ 602 (809)
+ +.+|..+. ++|+.||+++|++...
T Consensus 818 L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 818 I-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp C-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred C-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 9 78888776 6999999999998753
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=434.04 Aligned_cols=466 Identities=19% Similarity=0.194 Sum_probs=341.9
Q ss_pred EEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccC
Q 040849 78 TALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFN 157 (809)
Q Consensus 78 ~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 157 (809)
+.++++++++++ +|..+. ++|++|||++|.+++..|..|+++++|++|+|++|.+++..|+.|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 678889998886 776664 78999999999999888889999999999999999999888889999999999999999
Q ss_pred CCCCCCcccccCCCCCCEEEcccccCcc-cCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcC--CCC
Q 040849 158 ELVGKVPRKLGSLSKLRTLAVHYNNLSG-QIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKL--SGE 234 (809)
Q Consensus 158 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l--~~~ 234 (809)
+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|++++.....+.++ +|+.|++++|.+ ++.
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGG 186 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSS
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeeccccccccc
Confidence 988 45655 78999999999999986 346789999999999999998876433333333 348999999888 777
Q ss_pred cchhccCCC--CCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCC
Q 040849 235 IPFSIYNLS--SLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFG 312 (809)
Q Consensus 235 ~~~~l~~l~--~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 312 (809)
.|..+..+. .+ .++++.|.+.+.++......+++|+.+++++|+..-. .+.+.++.+.
T Consensus 187 ~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l~~~~~~l~ 246 (562)
T 3a79_B 187 ETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RLMTFLSELT 246 (562)
T ss_dssp SCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HHHHHHHHHH
T ss_pred CcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hHHHHHHHHh
Confidence 777766654 22 3455555555544444333444455555554431000 0111112233
Q ss_pred CCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccc--
Q 040849 313 NLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL-- 390 (809)
Q Consensus 313 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l-- 390 (809)
.+++|+.++++.+.+.+ +.+.+. +.... ..+|++|++++|+++|.+|..+
T Consensus 247 ~l~~L~~L~L~~~~l~~-------------------------~~~~~~-~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTW-------------------------KCSVKL-FQFFW--PRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp SCSSCEEEEEEEEEECH-------------------------HHHHHH-HHHHT--TSSEEEEEEEEEEECSCCCCCCCC
T ss_pred ccCcceEEEecCCcCcH-------------------------HHHHHH-HHhhh--cccccEEEEeccEeeccccchhhh
Confidence 34444444444443321 111111 11111 1258888888888887777776
Q ss_pred ---cCCCCCCeeeCCCccceecCC-ccccC---CCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCcccc
Q 040849 391 ---RNLVNLERLLLEGNQFTGRIP-GSIGD---LHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLG 463 (809)
Q Consensus 391 ---~~l~~L~~L~Ls~N~l~~~~p-~~~~~---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 463 (809)
.+++.|+.++++.|.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|++++..|..+.
T Consensus 299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc
Confidence 6666666666666666 334 22221 257899999999875332 126788899999999999988888999
Q ss_pred CCCCCcEEeCcCCcCcc--ccCcchhcccCCceEEEccCCcCcccCC-CCccCCCCCCEEEccccccccccCccccCCCC
Q 040849 464 KCQNLILLGLSNNNLTG--TIPTEVIGLSSLSIYLDLSQNQLNGTLP-SNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 540 (809)
Q Consensus 464 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~l~~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 540 (809)
++++|++|++++|++++ .+|..+.+++++ +.|++++|++++.+| ..+..+++|++|++++|++++.+|..+. ++
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~ 451 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence 99999999999999986 345678888888 789999999998455 4588899999999999999988887765 78
Q ss_pred CCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC
Q 040849 541 LEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK 606 (809)
Q Consensus 541 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~ 606 (809)
|++|+|++|+++ .+|..+.++++|+.|||++|++++..+..|..+++|+.|++++|+++|.+|..
T Consensus 452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 999999999999 67777779999999999999999544444999999999999999999877643
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=384.32 Aligned_cols=293 Identities=29% Similarity=0.534 Sum_probs=277.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCccccCCCCCCCCCCc--ccccccCCCC--CcEEEEECCCCCCcc--ccCccccCCCCcc
Q 040849 29 KSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQ--WKGVTCSPRH--QRVTALLLPSLLLQG--SLSPHIGNLSFLR 102 (809)
Q Consensus 29 ~~~~~~~~~ll~~k~~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~l~g--~~~~~l~~l~~L~ 102 (809)
.|.++|++||++||+++. ||. .+++|+.++|||. |.||.|+..+ ++|+.|+|+++.++| .+|+.++++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 589999999999999996 776 7899988889999 9999998655 899999999999999 9999999999999
Q ss_pred EEeCCC-CCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccc
Q 040849 103 VLDLKN-NSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN 181 (809)
Q Consensus 103 ~LdLs~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 181 (809)
+|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..+..+++|++|+|++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCccCCCCC-CCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccC
Q 040849 182 NLSGQIPSSFGNLS-SLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLP 260 (809)
Q Consensus 182 ~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 260 (809)
++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|.+++..|..+..+++|+.|++++|.+++.+|
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 99999999999998 999999999999999999999998 9999999999999999999999999999999999997777
Q ss_pred hhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEecccc
Q 040849 261 SDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326 (809)
Q Consensus 261 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~ 326 (809)
. +. .+++|++|++++|++++.+|..+..+++|+.|++++|.+++.+|....+++|+.+++++|.
T Consensus 239 ~-~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 239 K-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp G-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred c-cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 6 43 6899999999999999999999999999999999999999999998888999988888887
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=409.18 Aligned_cols=459 Identities=20% Similarity=0.218 Sum_probs=336.7
Q ss_pred CCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEE
Q 040849 98 LSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLA 177 (809)
Q Consensus 98 l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 177 (809)
+...+++|+++|++++ +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3345889999999985 676554 7888899999988877778888888888888888888888888888888888888
Q ss_pred cccccCcccCCccCCCCCCCCEEEcccCccccc-CcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccc
Q 040849 178 VHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ-IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQ 256 (809)
Q Consensus 178 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 256 (809)
|++|+++ .+|.. .+++|++|++++|++++. +|..|+++++|++|++++|.+++. .+..+++|
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L----------- 169 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL----------- 169 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS-----------
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc-----------
Confidence 8888888 45655 788888888888888763 457788888888888888877642 22222222
Q ss_pred cccChhhhcCCCCCcEEEccCccc--cccCCcccccCC-CCceEecCCCcceeeCCC--CCCCCCCcEEEeccccCCCCC
Q 040849 257 GSLPSDLGFTLPNLERLNLGENQF--TGPIPASISNAS-HLMRLTIPINGFSGKVPS--FGNLHKLQWVSISMNHLGNGE 331 (809)
Q Consensus 257 ~~~p~~~~~~l~~L~~L~Ls~N~l--~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~Ls~n~l~~~~ 331 (809)
+|+.|++++|.+ ++..|..+..+. ....++++.|.+.+.++. +..+++|+.++++.|......
T Consensus 170 ------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 237 (562)
T 3a79_B 170 ------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237 (562)
T ss_dssp ------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH
T ss_pred ------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch
Confidence 225555555555 555555554433 111345566666554443 556667777777766421000
Q ss_pred CCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCccccc----CCccccCCCCCCeeeCCCccce
Q 040849 332 KDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGN----IPSGLRNLVNLERLLLEGNQFT 407 (809)
Q Consensus 332 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 407 (809)
.......+..++. |+.++++++.+.+. ++.. ...++|++|++++|.++
T Consensus 238 --l~~~~~~l~~l~~-------------------------L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 238 --LMTFLSELTRGPT-------------------------LLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTIT 289 (562)
T ss_dssp --HHHHHHHHHSCSS-------------------------CEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEEC
T ss_pred --HHHHHHHHhccCc-------------------------ceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEee
Confidence 0001112222233 55555555554432 1222 23459999999999999
Q ss_pred ecCCccc-----cCCCCCCEEEeeCCeeecccC-cCCcC---CCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcC
Q 040849 408 GRIPGSI-----GDLHKLQRLGLQGNKFLGEIP-SSIGN---LTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNL 478 (809)
Q Consensus 408 ~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 478 (809)
|.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|++
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcc
Confidence 9999877 6777777777777776 344 22222 257999999999986432 226889999999999999
Q ss_pred ccccCcchhcccCCceEEEccCCcCccc--CCCCccCCCCCCEEEccccccccccCc-cccCCCCCCEEeCcCCcccccc
Q 040849 479 TGTIPTEVIGLSSLSIYLDLSQNQLNGT--LPSNFGILKNLGVLDVSENKLSGEIPN-SLGSCVRLEQLGMNGNFFQGNI 555 (809)
Q Consensus 479 ~~~~p~~~~~l~~l~~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~ 555 (809)
++.+|..+.+++++ +.|++++|++++. +|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++.+
T Consensus 366 ~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 366 TDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred ccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 99899999999999 8999999999974 457799999999999999999985665 5889999999999999999888
Q ss_pred chhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC--CCCCCCCcccccCCCCCCC
Q 040849 556 PSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK--GVFSNSSAVSLDGNDNLCG 625 (809)
Q Consensus 556 p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~--~~~~~~~~~~~~~n~~lc~ 625 (809)
|..+. ++|+.|||++|+++ .+|..+..+++|++|++++|++++ +|.. ..+..+...++.+|+..|.
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCC
Confidence 87665 79999999999999 677777799999999999999994 5543 4566777888999998875
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=394.53 Aligned_cols=408 Identities=23% Similarity=0.272 Sum_probs=195.9
Q ss_pred ccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCC
Q 040849 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSK 172 (809)
Q Consensus 93 ~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 172 (809)
|.-...++|++|++++|.+ |.+|.+++++++|++|++++|.+.|.+|..++++++|+.++++.|.. .+
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~ 72 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQ 72 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HT
T ss_pred ccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cC
Confidence 3334567888888888888 68888888888888888888888888888888888764444433321 23
Q ss_pred CCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCC
Q 040849 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPV 252 (809)
Q Consensus 173 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 252 (809)
+++|++++|++++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++.. .. .++|++|++++
T Consensus 73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-DL---PPLLEYLGVSN 140 (454)
T ss_dssp CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-SC---CTTCCEEECCS
T ss_pred CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-CC---CCCCCEEECcC
Confidence 4444444444442 2221 1344444444444443 2221 133444444444443211 00 03344444444
Q ss_pred cccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCC
Q 040849 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEK 332 (809)
Q Consensus 253 n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 332 (809)
|++++ +| .+. .+++|++|++++|++++ +|..+ .+|+.|++++|.+++ +|.+..+++|+.|++++|.+++..
T Consensus 141 n~l~~-lp-~~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~l~- 211 (454)
T 1jl5_A 141 NQLEK-LP-ELQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKKLP- 211 (454)
T ss_dssp SCCSS-CC-CCT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSSCC-
T ss_pred CCCCC-Cc-ccC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCcCC-
Confidence 44442 33 222 44445555555554443 23221 245555555555544 234555555555555555544321
Q ss_pred CchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCc
Q 040849 333 DDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPG 412 (809)
Q Consensus 333 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 412 (809)
.. +.+|++|++++|++. .+| .+..+++|++|++++|++++ +|.
T Consensus 212 ------------------------------~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~ 254 (454)
T 1jl5_A 212 ------------------------------DL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD 254 (454)
T ss_dssp ------------------------------CC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS
T ss_pred ------------------------------CC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc
Confidence 10 123777777777776 455 37777777888888777774 343
Q ss_pred cccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCC
Q 040849 413 SIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSL 492 (809)
Q Consensus 413 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 492 (809)
. .++|++|++++|++++ +|.. +++|++|++++|++++. |.. .++|++|++++|++++ ++.. .+++
T Consensus 255 ~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L 319 (454)
T 1jl5_A 255 L---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCDL---PPSL 319 (454)
T ss_dssp C---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECCC---CTTC
T ss_pred c---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccCC---cCcC
Confidence 2 3677788888887775 4433 36777788888877763 111 1577788888887774 2211 1345
Q ss_pred ceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCcccc--ccchhhcCCCCCCEEeC
Q 040849 493 SIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQG--NIPSSFSSLRGIENLDL 570 (809)
Q Consensus 493 ~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdL 570 (809)
+.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++..+
T Consensus 320 -~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L-------- 382 (454)
T 1jl5_A 320 -EELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL-------- 382 (454)
T ss_dssp -CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------
T ss_pred -CEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------
Confidence 677888888775 4443 467788888888887 4555 36778888888888887 666655432
Q ss_pred CCCCcccccccccccCCCCCeEEccCCcccc--cCCC
Q 040849 571 SRNNLSGRIPKYFENFLFLQNLNLSFNHFEG--EVPI 605 (809)
Q Consensus 571 s~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g--~~p~ 605 (809)
+.|++.|.+|.. +++|++|++++|+++| .+|.
T Consensus 383 ~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 383 RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ECCC---------------------------------
T ss_pred hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 346666666653 3667777777777776 5553
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=389.23 Aligned_cols=394 Identities=19% Similarity=0.191 Sum_probs=251.8
Q ss_pred cEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCC-cccccCCCCCCEEEccc
Q 040849 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKV-PRKLGSLSKLRTLAVHY 180 (809)
Q Consensus 102 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~ 180 (809)
+.++.++++++ .+|. +. ++|++|+|++|.+++..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 46777777776 4454 22 67888888888887777777888888888888888776444 45677777777777777
Q ss_pred ccCcccCCccCCCCCCCCEEEcccCcccccCccc--ccCCCCccEEEeecCcCCCCcchh-ccCCCCCceeccCCccccc
Q 040849 181 NNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT--LSQLKRMRFIGFGVNKLSGEIPFS-IYNLSSLNYFEFPVNQLQG 257 (809)
Q Consensus 181 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~ 257 (809)
|++++..|..|+++++|++|++++|++++..|.. |..+++|++|++++|.+++..|.. +.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------- 151 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL----------------- 151 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG-----------------
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC-----------------
Confidence 7777777777777777777777777776644443 666666666666666655444433 33
Q ss_pred ccChhhhcCCCCCcEEEccCccccccCCcccccC--CCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCch
Q 040849 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNA--SHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDL 335 (809)
Q Consensus 258 ~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 335 (809)
.+++|++|++++|++++..|..+..+ .+|+.|++++| .+.+.....+
T Consensus 152 --------~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n-----------------------~l~~~~~~~~ 200 (455)
T 3v47_A 152 --------NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-----------------------TLQDMNEYWL 200 (455)
T ss_dssp --------GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC-----------------------BCTTCSTTCT
T ss_pred --------CCCcccEEeCCCCcccccChhhhhccccccccccccccC-----------------------cccccchhhc
Confidence 44555555555555554444444332 22333333333 2222111100
Q ss_pred hhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCcccc
Q 040849 336 EFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIG 415 (809)
Q Consensus 336 ~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 415 (809)
.. .....+... ++|+.|++++|++.+..|..+... .
T Consensus 201 ~~----------------------~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~---------------------~ 236 (455)
T 3v47_A 201 GW----------------------EKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDA---------------------I 236 (455)
T ss_dssp TH----------------------HHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHH---------------------T
T ss_pred cc----------------------ccccccccc-ceeeeEecCCCcccccchhhhhcc---------------------c
Confidence 00 000000011 125556666666655555444332 0
Q ss_pred CCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccC--CCCCcEEeCcCCcCccccCcchhcccCCc
Q 040849 416 DLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGK--CQNLILLGLSNNNLTGTIPTEVIGLSSLS 493 (809)
Q Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~ 493 (809)
..++|+.|++++|.+.+.. +..+.+.+..+..+.. .++|+.|++++|++++..|..+..+++|
T Consensus 237 ~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L- 301 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL- 301 (455)
T ss_dssp TTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC-
T ss_pred cccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC-
Confidence 1134444444444332211 0111111111222222 2567777777777776667777777777
Q ss_pred eEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCC
Q 040849 494 IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573 (809)
Q Consensus 494 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 573 (809)
+.|++++|++++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|||++|
T Consensus 302 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence 67777777777777778888888999999999998888888899999999999999999888999999999999999999
Q ss_pred CcccccccccccCCCCCeEEccCCcccccCCCC
Q 040849 574 NLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK 606 (809)
Q Consensus 574 ~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~ 606 (809)
++++..+..|..+++|++|++++|+++|.+|..
T Consensus 382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 999888888889999999999999999988853
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=389.67 Aligned_cols=367 Identities=21% Similarity=0.260 Sum_probs=248.2
Q ss_pred CCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccC-CccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEE
Q 040849 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQI-PDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLA 177 (809)
Q Consensus 99 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 177 (809)
++|++|||++|.+++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 68899999999999888889999999999999999987655 56789999999999999999888888999999999999
Q ss_pred cccccCcccCCcc--CCCCCCCCEEEcccCcccccCccc-ccCCCCccEEEeecCcCCCCcchhccCC--CCCceeccCC
Q 040849 178 VHYNNLSGQIPSS--FGNLSSLEVLSASANQFVGQIPKT-LSQLKRMRFIGFGVNKLSGEIPFSIYNL--SSLNYFEFPV 252 (809)
Q Consensus 178 Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~ 252 (809)
|++|++++..|.. |.++++|++|++++|++++..|.. +.++++|++|++++|.+++..+..+..+ .+|+.|+++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 889999999999999999887776 7889999999999999998888887766 6778888888
Q ss_pred cccccccChhhh-------cCCCCCcEEEccCccccccCCcccccC---CCCceEecCCCcceeeCCCCCCCCCCcEEEe
Q 040849 253 NQLQGSLPSDLG-------FTLPNLERLNLGENQFTGPIPASISNA---SHLMRLTIPINGFSGKVPSFGNLHKLQWVSI 322 (809)
Q Consensus 253 n~l~~~~p~~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L 322 (809)
|.+.+..+..+. ..+++|++|++++|++++..|..+... ++|+.|++++|...+.....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------- 258 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH----------- 258 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-----------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch-----------
Confidence 887743332211 134667777777777776666655443 45555555555433211100
Q ss_pred ccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCC
Q 040849 323 SMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLE 402 (809)
Q Consensus 323 s~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 402 (809)
+. +.+..+..+..+ ..++|++|+++
T Consensus 259 --~~------------------------------~~~~~~~~~~~~-----------------------~~~~L~~L~l~ 283 (455)
T 3v47_A 259 --TN------------------------------FKDPDNFTFKGL-----------------------EASGVKTCDLS 283 (455)
T ss_dssp --CS------------------------------SCCCCTTTTGGG-----------------------TTSCCCEEECC
T ss_pred --hh------------------------------hccCcccccccc-----------------------cccCceEEEec
Confidence 00 000000000000 12345555555
Q ss_pred CccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCcccc
Q 040849 403 GNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTI 482 (809)
Q Consensus 403 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 482 (809)
+|.+++..|..+..+++|++|++++|++.+..|..|.++++|++|++++|.+++..|..+..+++|++|+|++|++++..
T Consensus 284 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 55555555555555555555555555555555555555555555555555555555555555566666666666665555
Q ss_pred CcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccC
Q 040849 483 PTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532 (809)
Q Consensus 483 p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 532 (809)
|..+.++++| ++|++++|++++..+..+..+++|++|+|++|.+++..|
T Consensus 364 ~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 364 DQSFLGLPNL-KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhccccccc-cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5556666666 566666666665555566777778888888888877666
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=378.03 Aligned_cols=419 Identities=23% Similarity=0.263 Sum_probs=202.3
Q ss_pred CcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEc
Q 040849 75 QRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154 (809)
Q Consensus 75 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 154 (809)
.+++.++++++.+ |.+|++++++++|++|++++|.++|.+|.+++++++|+.+++++|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 5788899999999 89999999999999999999999999999999999886655554432 34556666
Q ss_pred ccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCC
Q 040849 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGE 234 (809)
Q Consensus 155 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 234 (809)
++|.+++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++. |.. .++|++|++++|++++
T Consensus 79 ~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 79 NNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-
T ss_pred cCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-
Confidence 6666553 2221 2456666666666654 4432 25566666666655532 111 1456666666666654
Q ss_pred cchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCC
Q 040849 235 IPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNL 314 (809)
Q Consensus 235 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l 314 (809)
+| .+.++++|++|++++|++++ +|.. .++|++|++++|++++ +| .+..+++|+.|++++|.+++ +|.. .
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--~ 214 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--P 214 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--C
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--c
Confidence 44 35666666666666666653 4432 2466677777776665 44 46666777777777776665 2221 1
Q ss_pred CCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCC
Q 040849 315 HKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLV 394 (809)
Q Consensus 315 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 394 (809)
++|+.|++++|.++... .+..+++ |++|++++|++++ +|.. ++
T Consensus 215 ~~L~~L~l~~n~l~~lp--------~~~~l~~-------------------------L~~L~l~~N~l~~-l~~~---~~ 257 (454)
T 1jl5_A 215 LSLESIVAGNNILEELP--------ELQNLPF-------------------------LTTIYADNNLLKT-LPDL---PP 257 (454)
T ss_dssp TTCCEEECCSSCCSSCC--------CCTTCTT-------------------------CCEEECCSSCCSS-CCSC---CT
T ss_pred CcccEEECcCCcCCccc--------ccCCCCC-------------------------CCEEECCCCcCCc-cccc---cc
Confidence 36666666666655221 1223333 4444444444432 2221 24
Q ss_pred CCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCC-CCCcEEeC
Q 040849 395 NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKC-QNLILLGL 473 (809)
Q Consensus 395 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L 473 (809)
+|++|++++|++++ +|.. .++|++|++++|++++. |.. .++|++|++++|++++. + .+ ++|++|++
T Consensus 258 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~L 324 (454)
T 1jl5_A 258 SLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNV 324 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEEC
T ss_pred ccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEEC
Confidence 45555555555553 3322 24556666666655542 111 14566666666666542 1 12 36777777
Q ss_pred cCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccccc--ccCccccCCCCCCEEeCcCCcc
Q 040849 474 SNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSG--EIPNSLGSCVRLEQLGMNGNFF 551 (809)
Q Consensus 474 s~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l 551 (809)
++|++++ +|.. ++++ +.|++++|++++ +|. .+++|++|++++|++++ .+|.+++. |+.|.+
T Consensus 325 s~N~l~~-lp~~---~~~L-~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~ 387 (454)
T 1jl5_A 325 SNNKLIE-LPAL---PPRL-ERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSH 387 (454)
T ss_dssp CSSCCSC-CCCC---CTTC-CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-
T ss_pred CCCcccc-cccc---CCcC-CEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccc
Confidence 7777764 5543 3555 677777777774 454 36788888888888887 66766543 345777
Q ss_pred ccccchhhcCCCCCCEEeCCCCCccc--ccccccccCCCCCeEEccCCcccccCCC
Q 040849 552 QGNIPSSFSSLRGIENLDLSRNNLSG--RIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 552 ~~~~p~~~~~l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
.|.+|.. +++|+.||+++|++++ .+|.+ ++.|.+++|.+.+.+|.
T Consensus 388 ~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 388 LAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp --------------------------------------------------------
T ss_pred ccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 7777764 4688899999999987 66644 56677888888887764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=367.26 Aligned_cols=360 Identities=19% Similarity=0.195 Sum_probs=264.3
Q ss_pred CccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCC
Q 040849 92 SPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLS 171 (809)
Q Consensus 92 ~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 171 (809)
+..++++++|++|||++|.+++. | .++.+++|++|+|++|.+++. | ++.+++|++|++++|.+++. | ++.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 44567788888888888888864 5 688888888888888888864 3 78888888888888888764 3 78888
Q ss_pred CCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccC
Q 040849 172 KLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251 (809)
Q Consensus 172 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 251 (809)
+|++|++++|++++ +| ++.+++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|++|+++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 88888888888886 33 78888888888888888874 2778888888888888655555 46778888888888
Q ss_pred CcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCC
Q 040849 252 VNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGE 331 (809)
Q Consensus 252 ~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 331 (809)
+|++++ +| +. .+++|+.|++++|++++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|.+++..
T Consensus 179 ~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 179 FNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC
T ss_pred CCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC
Confidence 888875 55 33 678888888888888865 37778888888888888887 44 778888888888888887643
Q ss_pred CCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCC
Q 040849 332 KDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIP 411 (809)
Q Consensus 332 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 411 (809)
...+++|+.++++.| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|
T Consensus 250 ---------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 250 ---------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp ---------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred ---------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 234566777776654 26777788887777666 4677888888888887776666
Q ss_pred ccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccC
Q 040849 412 GSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSS 491 (809)
Q Consensus 412 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 491 (809)
. ..++|+.|++++| ++|++|++++|++++. .+.++++|+.||+++|++++ + +.
T Consensus 304 ~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-l-------~~ 356 (457)
T 3bz5_A 304 C---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD-F-------SS 356 (457)
T ss_dssp C---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB-C-------TT
T ss_pred c---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC-c-------cc
Confidence 4 3455565555544 5677788888888764 27777778888888887774 1 23
Q ss_pred CceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccc
Q 040849 492 LSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSL 535 (809)
Q Consensus 492 l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 535 (809)
+ ..|++++|+++|. +.+..|+.+++++|+++|.+|..+
T Consensus 357 L-~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 357 V-GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp G-GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred c-ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 3 3456677777665 244556666777777777776654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=362.04 Aligned_cols=366 Identities=18% Similarity=0.182 Sum_probs=257.9
Q ss_pred CCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCC
Q 040849 109 NSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIP 188 (809)
Q Consensus 109 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 188 (809)
....+..+..++++++|++|++++|.+++. | .+..+++|++|+|++|.+++. | ++.+++|++|++++|++++. +
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence 344556667788899999999999998864 5 688889999999999998874 3 88888999999999988864 3
Q ss_pred ccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCC
Q 040849 189 SSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLP 268 (809)
Q Consensus 189 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 268 (809)
++++++|++|++++|++++. | ++.+++|++|++++|++++. .+..+++|++|+++.|+..+.++ +. .++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~-~l~ 170 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VT-PQT 170 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--CT-TCT
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--cc-cCC
Confidence 88888889999988888864 3 77888888888888888764 25566666666666664444442 22 455
Q ss_pred CCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCcc
Q 040849 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLE 348 (809)
Q Consensus 269 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~ 348 (809)
+|+.|++++|++++ +| +..+++|+.|+++.|.+++.. +..
T Consensus 171 ~L~~L~ls~n~l~~-l~-------------------------l~~l~~L~~L~l~~N~l~~~~---------l~~----- 210 (457)
T 3bz5_A 171 QLTTLDCSFNKITE-LD-------------------------VSQNKLLNRLNCDTNNITKLD---------LNQ----- 210 (457)
T ss_dssp TCCEEECCSSCCCC-CC-------------------------CTTCTTCCEEECCSSCCSCCC---------CTT-----
T ss_pred cCCEEECCCCccce-ec-------------------------cccCCCCCEEECcCCcCCeec---------ccc-----
Confidence 55555555555543 22 344444445555444444320 111
Q ss_pred EEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCC
Q 040849 349 LLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428 (809)
Q Consensus 349 ~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 428 (809)
+ ++|+.|++++|++++ +| +..+++|++|++++|++++.. +..+++|+.|++++|
T Consensus 211 -------------------l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 211 -------------------N-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT 264 (457)
T ss_dssp -------------------C-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC
T ss_pred -------------------C-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC
Confidence 1 236666666666665 34 667777788888888777643 445677777777765
Q ss_pred eeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCC
Q 040849 429 KFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLP 508 (809)
Q Consensus 429 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p 508 (809)
+|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|... ..+ +.|++++
T Consensus 265 --------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L-~~L~l~~-------- 316 (457)
T 3bz5_A 265 --------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---AGI-TELDLSQ-------- 316 (457)
T ss_dssp --------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---CCC-SCCCCTT--------
T ss_pred --------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---Ccc-eEechhh--------
Confidence 34566777887777666 4677888888888888877776432 333 3344443
Q ss_pred CCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCC
Q 040849 509 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLF 588 (809)
Q Consensus 509 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 588 (809)
+++|++|++++|++++. + ++++++|+.|++++|++++ ++.|..|++++|+++|. ..+..
T Consensus 317 -----~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~ 375 (457)
T 3bz5_A 317 -----NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTIT 375 (457)
T ss_dssp -----CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEE
T ss_pred -----cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeee
Confidence 46889999999999874 3 8889999999999999986 24567778999999887 35566
Q ss_pred CCeEEccCCcccccCCCC
Q 040849 589 LQNLNLSFNHFEGEVPIK 606 (809)
Q Consensus 589 L~~l~ls~N~l~g~~p~~ 606 (809)
|..+++++|+|+|.||..
T Consensus 376 l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 376 MPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCCBCCBTTBEEEECCTT
T ss_pred cCccccccCcEEEEcChh
Confidence 888899999999999864
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=352.42 Aligned_cols=121 Identities=24% Similarity=0.399 Sum_probs=73.4
Q ss_pred CCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEE
Q 040849 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTL 176 (809)
Q Consensus 97 ~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 176 (809)
.+++|+.|+++++.++. +| .+..+++|++|+|++|.+++..| +.++++|++|++++|.+.+..+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 34566677777776653 33 36666666666776666664433 6666666666666666664433 6666666666
Q ss_pred EcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEee
Q 040849 177 AVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFG 227 (809)
Q Consensus 177 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 227 (809)
++++|++++..+ +.++++|++|++++|.+++. + .+..+++|+.|+++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG 164 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC
Confidence 666666664322 66666666666666666542 2 35556666666554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=349.61 Aligned_cols=144 Identities=27% Similarity=0.390 Sum_probs=87.5
Q ss_pred cEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcc
Q 040849 76 RVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLG 155 (809)
Q Consensus 76 ~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 155 (809)
+++.+++.++.+.. +| .+..+++|++|||++|.+++..| ++++++|++|++++|.+++..| +.++++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 45666666666554 33 35666677777777776665433 6666777777777776665443 6666777777777
Q ss_pred cCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCC
Q 040849 156 FNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232 (809)
Q Consensus 156 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 232 (809)
+|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+++ |.+.+.. .+.++++|+.|++++|.++
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 776665432 6666777777777776664 22 36666677777664 3343322 2555666666666655554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=352.92 Aligned_cols=346 Identities=19% Similarity=0.209 Sum_probs=281.3
Q ss_pred eeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC-CCCCCCCcEEEeccc
Q 040849 247 YFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSISMN 325 (809)
Q Consensus 247 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~Ls~n 325 (809)
.++.+.++++ .+|..+ .++++.|+|++|++++..+..|.++++|++|++++|.+++..|. |.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3444445554 556543 25678888888888877777788888888888888888777665 777777777777777
Q ss_pred cCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCcc
Q 040849 326 HLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQ 405 (809)
Q Consensus 326 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 405 (809)
.++..... .+..+ ++|++|++++|++.+..|..|.++++|++|++++|.
T Consensus 91 ~l~~~~~~------------------------------~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 91 RLKLIPLG------------------------------VFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp CCCSCCTT------------------------------SSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred cCCccCcc------------------------------cccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 77654321 12222 247888888888888888888889999999999999
Q ss_pred ceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcc
Q 040849 406 FTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTE 485 (809)
Q Consensus 406 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 485 (809)
+++..+..|.++++|+.|++++|++++..+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.+|..
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 98888888999999999999999998777777888999999999999999888888999999999999999888888887
Q ss_pred hhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCC
Q 040849 486 VIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565 (809)
Q Consensus 486 ~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 565 (809)
.....+| +.|++++|++++..+..+..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..|.++++|
T Consensus 220 ~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 220 CLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred cccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 7777788 789999999986655678899999999999999998888899999999999999999999999999999999
Q ss_pred CEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCCCCCCCCCcccccCCCCCCCCcc
Q 040849 566 ENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGIS 628 (809)
Q Consensus 566 ~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~ 628 (809)
+.|||++|++++..+..|..+++|++|++++|++.+..+..+.+.......+.++...|..+.
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 999999999999888889999999999999999998766544444444456677777886553
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=355.08 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=118.4
Q ss_pred cccCCCCCCCCCCc----ccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCC
Q 040849 51 EVLSSWNYSRHFCQ----WKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQ 126 (809)
Q Consensus 51 ~~l~~W~~~~~~c~----w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~ 126 (809)
..+++|..+.+||. |.++.|+. ++ +........ ...-..+++++.|++++|.+....+..|+.+++|+
T Consensus 7 ~~l~~~~~~~~C~~~~~~~~c~~~~~---~i---~~~~~~~~~--~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~ 78 (597)
T 3oja_B 7 YNVKPRQPEYKCIDSNLQYDCVFYDV---HI---DMQTQDVYF--GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78 (597)
T ss_dssp ----CCCSEECCCCC--CCSEEECSC---EE---CSSCCCCEE--SCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCS
T ss_pred ccccCCCCCCcCcccCcCceeEecCc---ee---ccccccccc--CcccccCCCceEEEeeCCCCCCcCHHHHccCCCCc
Confidence 35788988777874 65555531 11 111111111 11223467788888888888876666678888888
Q ss_pred ccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCc
Q 040849 127 FLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206 (809)
Q Consensus 127 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 206 (809)
+|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|++++|.
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence 88888888887777788888888888888888887777777888888888888888876555566777777777777777
Q ss_pred ccccCcccccCCCCccEEEeecCcCC
Q 040849 207 FVGQIPKTLSQLKRMRFIGFGVNKLS 232 (809)
Q Consensus 207 l~~~~p~~l~~l~~L~~L~L~~n~l~ 232 (809)
+++..|..|..+++|+.|++++|.++
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCChhhhhcCCcCcEEECcCCCCC
Confidence 77666666666666666666665554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=334.63 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=113.7
Q ss_pred cCCCCCCCCCCc-ccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccC
Q 040849 53 LSSWNYSRHFCQ-WKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLD 131 (809)
Q Consensus 53 l~~W~~~~~~c~-w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls 131 (809)
+++|....+||. |.+..|.....++ ............-..++++++|++++|.++...+..|..+++|++|+|+
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 578987777775 5555554222222 1111111122223356788888888888876555557888888888888
Q ss_pred CCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccC
Q 040849 132 NNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQI 211 (809)
Q Consensus 132 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 211 (809)
+|.+++..+..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|+++...+..|.++++|++|++++|++++..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 88888777777888888888888888888777777788888888888888887544455677777777777777777666
Q ss_pred cccccCCCCccEEEeecCcCC
Q 040849 212 PKTLSQLKRMRFIGFGVNKLS 232 (809)
Q Consensus 212 p~~l~~l~~L~~L~L~~n~l~ 232 (809)
|..|..+++|+.|++++|.++
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCS
T ss_pred hhhccCCCCCCEEECCCCcCC
Confidence 666666666666666555544
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=337.08 Aligned_cols=309 Identities=22% Similarity=0.177 Sum_probs=221.6
Q ss_pred cCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCC
Q 040849 91 LSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSL 170 (809)
Q Consensus 91 ~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 170 (809)
+|..+. +++++|||++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++
T Consensus 26 ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 26 VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 444443 578899999999988888888888899999999888888888888888888888888888887666678888
Q ss_pred CCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceecc
Q 040849 171 SKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEF 250 (809)
Q Consensus 171 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 250 (809)
++|++|+|++|++++..|..|.++++|++|++++|.+++..+..|.++++|+.|++++|++++..+..+.++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-------- 175 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL-------- 175 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC--------
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc--------
Confidence 888888888888888778888888888888888888887777778888888888888777775544444444
Q ss_pred CCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCC
Q 040849 251 PVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNG 330 (809)
Q Consensus 251 ~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 330 (809)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++.
T Consensus 176 -----------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------------------- 218 (477)
T 2id5_A 176 -----------------HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-------------------- 218 (477)
T ss_dssp -----------------TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT--------------------
T ss_pred -----------------CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc--------------------
Confidence 4455555555554444444444444444444444333222111
Q ss_pred CCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecC
Q 040849 331 EKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRI 410 (809)
Q Consensus 331 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 410 (809)
..... .+|+.|++++|++++..+..+..+++|++|+|++|.+++..
T Consensus 219 ---------------------------------~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 219 ---------------------------------NCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp ---------------------------------TTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred ---------------------------------ccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence 11111 13666777777776544456777788888888888887777
Q ss_pred CccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCcc
Q 040849 411 PGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTG 480 (809)
Q Consensus 411 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 480 (809)
+..|.++++|+.|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++|+.|++++|.+..
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 7777778888888888888877777777777777777777777776666667777777777777777763
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=320.89 Aligned_cols=254 Identities=30% Similarity=0.513 Sum_probs=238.1
Q ss_pred cCcEEEccCCcccc--cCCccccCCCCCCeeeCCC-ccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEE
Q 040849 371 RLRILRVGNNQLFG--NIPSGLRNLVNLERLLLEG-NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447 (809)
Q Consensus 371 ~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 447 (809)
+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|++++.+|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 58889999999998 8899999999999999995 99999999999999999999999999999999999999999999
Q ss_pred EcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhccc-CCceEEEccCCcCcccCCCCccCCCCCCEEEccccc
Q 040849 448 SFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLS-SLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENK 526 (809)
Q Consensus 448 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 526 (809)
++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ .+ ++|++++|++++.+|..+..++ |++|+|++|+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999999999999999999999999999999999999988 67 8999999999999999999987 9999999999
Q ss_pred cccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC
Q 040849 527 LSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK 606 (809)
Q Consensus 527 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~ 606 (809)
+++.+|..|..+++|+.|+|++|.+++.+|. +..+++|++||+++|++++.+|..|..+++|++|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999988776 888999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCcccccCCCCCCCCc
Q 040849 607 GVFSNSSAVSLDGNDNLCGGI 627 (809)
Q Consensus 607 ~~~~~~~~~~~~~n~~lc~~~ 627 (809)
+.+..+....+.+|+.+||.+
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTT
T ss_pred ccccccChHHhcCCCCccCCC
Confidence 888889999999999999864
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=320.75 Aligned_cols=271 Identities=18% Similarity=0.239 Sum_probs=206.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCccccCCC----CCCCCCCcccccccCC--------CCCcEEEEECCCCCCccccCccc
Q 040849 28 HKSNETDQLALLEFKAKVTHDPLEVLSSW----NYSRHFCQWKGVTCSP--------RHQRVTALLLPSLLLQGSLSPHI 95 (809)
Q Consensus 28 ~~~~~~~~~~ll~~k~~~~~~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~l~g~~~~~l 95 (809)
..+..+|++||++||+++..|+.+.+++| ....++|.|.|+.|+. ...+|+.|+|+++.++ .+|+.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 34567899999999999866887778899 4456899999999952 2367888888888887 677778
Q ss_pred cCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccC------
Q 040849 96 GNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGS------ 169 (809)
Q Consensus 96 ~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------ 169 (809)
+++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|+|++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 88888888888888887 77888888888888888888888 67878888888888888888777777776654
Q ss_pred ---CCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCc
Q 040849 170 ---LSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLN 246 (809)
Q Consensus 170 ---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 246 (809)
+++|++|+|++|+++ .+|..++++++|++|++++|++++ +|..+..+++|++|++++|++.+.+|..+.++++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 777777777777777 667777777777777777777774 455677777777777777777777777777777777
Q ss_pred eeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcc
Q 040849 247 YFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGF 304 (809)
Q Consensus 247 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l 304 (809)
+|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+.++++|+.+++..+.+
T Consensus 257 ~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 777777777767776665 567777777777777777777777776666666665443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=299.87 Aligned_cols=307 Identities=27% Similarity=0.391 Sum_probs=175.6
Q ss_pred ccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCC
Q 040849 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLR 174 (809)
Q Consensus 95 l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 174 (809)
+..+++|++|++++|.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.++.. +.+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 3456677778888777764 33 37777777788887777774333 77777777777777777643 3577777777
Q ss_pred EEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcc
Q 040849 175 TLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQ 254 (809)
Q Consensus 175 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 254 (809)
+|++++|++++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 77777777774332 7777777777777775544333 36777777777777777665433 4455555555555555
Q ss_pred cccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCc
Q 040849 255 LQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDD 334 (809)
Q Consensus 255 l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 334 (809)
+.+ ++. +. .+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..++
T Consensus 189 l~~-~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~------------------- 243 (347)
T 4fmz_A 189 IED-ISP-LA-SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLS------------------- 243 (347)
T ss_dssp CCC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCT-------------------
T ss_pred ccc-ccc-cc-CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCC-------------------
Confidence 542 222 21 34555555555555543222 3334444444444433332111 11222
Q ss_pred hhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccc
Q 040849 335 LEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSI 414 (809)
Q Consensus 335 ~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 414 (809)
+|++|++++|++++. ..+..+++|++|++++|.+++. ..+
T Consensus 244 ------------------------------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 244 ------------------------------------QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp ------------------------------------TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred ------------------------------------CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence 244444444444432 2345555666666666655543 235
Q ss_pred cCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCc
Q 040849 415 GDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT 479 (809)
Q Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 479 (809)
..+++|++|++++|++++..|..+..+++|++|++++|++++..| +..+++|+.|++++|.++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 556666666666666665555555666666666666666655444 555666666666666553
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=304.63 Aligned_cols=331 Identities=22% Similarity=0.249 Sum_probs=232.6
Q ss_pred CCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC-CCCCCCCcEEEe
Q 040849 244 SLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSI 322 (809)
Q Consensus 244 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~L 322 (809)
+++.+++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|. +..+++|++|++
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3444444444443 34443333455555555555555544444555555555555555555554443 455555555555
Q ss_pred ccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCC
Q 040849 323 SMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLE 402 (809)
Q Consensus 323 s~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 402 (809)
++|.++.... ..+..+ ++|++|++++|++.+..|..+..+++|++|+++
T Consensus 125 ~~n~l~~l~~------------------------------~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 125 ERNDLSSLPR------------------------------GIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp CSSCCCCCCT------------------------------TTTTTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CCCccCcCCH------------------------------HHhcCC-CCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 5555443221 111222 237777777777777777778888888888888
Q ss_pred CccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCcccc
Q 040849 403 GNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTI 482 (809)
Q Consensus 403 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 482 (809)
+|++++. .+..+++|+.|++++|.+++. ...++|++|++++|.+... |.. ..++|+.|++++|++++.
T Consensus 174 ~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~- 241 (390)
T 3o6n_A 174 SNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT- 241 (390)
T ss_dssp SSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC-
T ss_pred CCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc-
Confidence 8888754 255678888888888887643 3345788889999888765 322 247899999999999853
Q ss_pred CcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCC
Q 040849 483 PTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSL 562 (809)
Q Consensus 483 p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 562 (809)
..+..++++ +.|++++|++++..|..|..+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+
T Consensus 242 -~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l 317 (390)
T 3o6n_A 242 -AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317 (390)
T ss_dssp -GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence 577888888 789999999998889999999999999999999985 5667788999999999999998 567778899
Q ss_pred CCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCCCCCCCCCcccccCCCCCCCC
Q 040849 563 RGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGG 626 (809)
Q Consensus 563 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~ 626 (809)
++|+.|++++|+++... +..+++|+.|++++|++++.... ..+..+....+.+++..|..
T Consensus 318 ~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp TTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred CcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 99999999999998653 67789999999999999875332 23455555667777777864
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=296.10 Aligned_cols=306 Identities=25% Similarity=0.367 Sum_probs=219.6
Q ss_pred cCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcE
Q 040849 240 YNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQW 319 (809)
Q Consensus 240 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 319 (809)
..+++|+.|++++|.+. .+|. +. .+++|++|++++|++++..+ +..+++|++|++++|.++. ++.+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-ISALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-chHHcCCCcCCE
Confidence 35556666666666665 3333 22 45666666666666654322 5556666666666665553 234555555555
Q ss_pred EEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCee
Q 040849 320 VSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERL 399 (809)
Q Consensus 320 L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 399 (809)
|++++|.+.+ ..+ +..+ ++|+.|++++|.....++ .+..+++|++|
T Consensus 115 L~l~~n~i~~------------------------------~~~--~~~l-~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 115 LYLNEDNISD------------------------------ISP--LANL-TKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp EECTTSCCCC------------------------------CGG--GTTC-TTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred EECcCCcccC------------------------------chh--hccC-CceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 5555555443 221 2233 247777777775554433 37788888888
Q ss_pred eCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCc
Q 040849 400 LLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT 479 (809)
Q Consensus 400 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 479 (809)
++++|.+.+..+ +..+++|++|++++|++.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|+++
T Consensus 161 ~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC
Confidence 888888875443 7788888888888888875543 7778888888888888876544 778888888888888887
Q ss_pred cccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhh
Q 040849 480 GTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSF 559 (809)
Q Consensus 480 ~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 559 (809)
+..+ +..++++ +.|++++|++++. +.+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..|
T Consensus 235 ~~~~--~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 235 DLSP--LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCGG--GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCcc--hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 5433 7778888 7888888888864 4678889999999999999864 468899999999999999999999999
Q ss_pred cCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccc
Q 040849 560 SSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 560 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 600 (809)
.++++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999999998777 888999999999999875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=319.87 Aligned_cols=238 Identities=22% Similarity=0.232 Sum_probs=178.2
Q ss_pred CcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEccc
Q 040849 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK 451 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 451 (809)
|++|++++|.+.+..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+++. ...++|+.|++++
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~ 220 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASH 220 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCS
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccC
Confidence 555555555555555556666666777777777666432 44566677777777766542 2344677777777
Q ss_pred ccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccccccc
Q 040849 452 NMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEI 531 (809)
Q Consensus 452 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 531 (809)
|.+....+.. .++|+.|+|++|.+++ +..+..++.| +.|+|++|.+++.+|..|..+++|+.|+|++|++++ +
T Consensus 221 n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 293 (597)
T 3oja_B 221 NSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 293 (597)
T ss_dssp SCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-E
T ss_pred Cccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-C
Confidence 7776543322 2578888888888875 4667788888 788888888888888889999999999999999986 5
Q ss_pred CccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCCCCCCC
Q 040849 532 PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSN 611 (809)
Q Consensus 532 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~~~~ 611 (809)
|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++.. +..+++|+.|++++|+++|..+. ..+..
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~ 368 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRN 368 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTT
T ss_pred CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHH
Confidence 777788999999999999999 67788899999999999999998663 66788999999999999986532 24556
Q ss_pred CCcccccCCCCCCCCccc
Q 040849 612 SSAVSLDGNDNLCGGISE 629 (809)
Q Consensus 612 ~~~~~~~~n~~lc~~~~~ 629 (809)
+....+.+++..|+....
T Consensus 369 ~~~~~~~~~~~~C~~~~~ 386 (597)
T 3oja_B 369 VARPAVDDADQHCKIDYQ 386 (597)
T ss_dssp CCTTTBCCCCCCCCTTCE
T ss_pred HhhhccccccccCCcchh
Confidence 666678888889986543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=289.71 Aligned_cols=287 Identities=25% Similarity=0.313 Sum_probs=143.6
Q ss_pred ccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEccc
Q 040849 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHY 180 (809)
Q Consensus 101 L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 180 (809)
++.++++++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 444555555554 3344332 3555555555555554455555555555555555555555555555555555555555
Q ss_pred ccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCC--CcchhccCCCCCceeccCCcccccc
Q 040849 181 NNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSG--EIPFSIYNLSSLNYFEFPVNQLQGS 258 (809)
Q Consensus 181 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~ 258 (809)
|+++ .+|..+. ++|++|++++|++++..+..|.++++|+.|++++|.++. ..+..+..+ +|++|++++|+++ .
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-G 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-S
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-c
Confidence 5555 3333332 455666666665555444455555556666555555532 334444444 4555555555544 2
Q ss_pred cChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhh
Q 040849 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFV 338 (809)
Q Consensus 259 ~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 338 (809)
+|..+. ++|++|++++|.+++..+..+..+++|+.|
T Consensus 187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L----------------------------------------- 222 (332)
T 2ft3_A 187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRL----------------------------------------- 222 (332)
T ss_dssp CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCC-----------------------------------------
T ss_pred cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEE-----------------------------------------
Confidence 333321 345555555555444333333333333333
Q ss_pred hcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCC
Q 040849 339 NSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLH 418 (809)
Q Consensus 339 ~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 418 (809)
++++|++.+..+..+..+++|++|++++|+++ .+|..+..++
T Consensus 223 -------------------------------------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 223 -------------------------------------GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp -------------------------------------BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred -------------------------------------ECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 33333333333334444455555555555554 4444455555
Q ss_pred CCCEEEeeCCeeecccCcCCcC------CCCccEEEcccccCc--ccCCccccCCCCCcEEeCcCCc
Q 040849 419 KLQRLGLQGNKFLGEIPSSIGN------LTLLITLSFDKNMLE--GSIPSSLGKCQNLILLGLSNNN 477 (809)
Q Consensus 419 ~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~ 477 (809)
+|++|++++|++++..+..|.. ..+|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5555555555555444444433 244566666666655 4455566666666666666654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=285.62 Aligned_cols=106 Identities=29% Similarity=0.359 Sum_probs=50.6
Q ss_pred CCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEc
Q 040849 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAV 178 (809)
Q Consensus 99 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 178 (809)
+.|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 34555555555555544445555555555555555555444555555555555555555544 2232222 34444444
Q ss_pred ccccCcccCCccCCCCCCCCEEEcccCcc
Q 040849 179 HYNNLSGQIPSSFGNLSSLEVLSASANQF 207 (809)
Q Consensus 179 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 207 (809)
++|++++..+..|.++++|++|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcC
Confidence 44444433333344444444444444443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-34 Score=326.16 Aligned_cols=385 Identities=15% Similarity=0.116 Sum_probs=197.9
Q ss_pred CCCCEEEcccccCcccCCcc-CCCCCCCCEEEcccCcccc----cCcccccCCCCccEEEeecCcCCCCcchhccCCCCC
Q 040849 171 SKLRTLAVHYNNLSGQIPSS-FGNLSSLEVLSASANQFVG----QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSL 245 (809)
Q Consensus 171 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 245 (809)
++|++|+|++|+++...... +..+++|++|++++|+++. .++..+..+++|++|++++|.+++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~----------- 71 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV----------- 71 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-----------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH-----------
Confidence 45666777766665433222 5556666666666666653 2334445555555555555554433
Q ss_pred ceeccCCcccccccChhhhcCCC----CCcEEEccCccccc----cCCcccccCCCCceEecCCCcceeeCCC------C
Q 040849 246 NYFEFPVNQLQGSLPSDLGFTLP----NLERLNLGENQFTG----PIPASISNASHLMRLTIPINGFSGKVPS------F 311 (809)
Q Consensus 246 ~~L~l~~n~l~~~~p~~~~~~l~----~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~------~ 311 (809)
.+..+...++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+. .
T Consensus 72 -------------~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 72 -------------GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp -------------HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 2222222233 46666666666552 3355555556666666666555432211 1
Q ss_pred CCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhh----ccccCcEEEccCCccccc--
Q 040849 312 GNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGN----LSTRLRILRVGNNQLFGN-- 385 (809)
Q Consensus 312 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~----~~~~L~~L~Ls~n~l~~~-- 385 (809)
...++|+.|++++|.+++.... .....+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|.+++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCE--PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHH--HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred cCCCcceEEECCCCCCCHHHHH--HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 2234555555555555432110 11122334445555555555544433322222 112355555555544432
Q ss_pred --CCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCccc----CC
Q 040849 386 --IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGS----IP 459 (809)
Q Consensus 386 --~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~----~p 459 (809)
++..+..+++|++|++++|.+++.....+ .+..+..+++|++|++++|.+++. ++
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l-------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAEL-------------------CPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHH-------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHH-------------------HHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 23334444444444444444432210000 011122344555555555555432 34
Q ss_pred ccccCCCCCcEEeCcCCcCccccCcchhcc-----cCCceEEEccCCcCccc----CCCCccCCCCCCEEEccccccccc
Q 040849 460 SSLGKCQNLILLGLSNNNLTGTIPTEVIGL-----SSLSIYLDLSQNQLNGT----LPSNFGILKNLGVLDVSENKLSGE 530 (809)
Q Consensus 460 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~l~~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ 530 (809)
..+..+++|++|++++|++++..+..+... +++ +.|++++|.+++. ++..+..+++|++|||++|++++.
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 444455556666666665554333333221 344 5666666666543 344455667777777777777765
Q ss_pred cCccccC-----CCCCCEEeCcCCcccc----ccchhhcCCCCCCEEeCCCCCcccccccccc-----cCCCCCeEEccC
Q 040849 531 IPNSLGS-----CVRLEQLGMNGNFFQG----NIPSSFSSLRGIENLDLSRNNLSGRIPKYFE-----NFLFLQNLNLSF 596 (809)
Q Consensus 531 ~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~-----~l~~L~~l~ls~ 596 (809)
.+..+.. .++|++|+|++|.+++ .+|..+..+++|++||+++|++++.....+. ....|+.|++.+
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence 5554443 5678888888888876 6777777788888888888887754322221 234577777777
Q ss_pred Ccccc
Q 040849 597 NHFEG 601 (809)
Q Consensus 597 N~l~g 601 (809)
+.+..
T Consensus 437 ~~~~~ 441 (461)
T 1z7x_W 437 IYWSE 441 (461)
T ss_dssp CCCCH
T ss_pred cccCH
Confidence 76654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-31 Score=284.37 Aligned_cols=287 Identities=23% Similarity=0.283 Sum_probs=166.8
Q ss_pred CCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC-CCCCCCCcEEEe
Q 040849 244 SLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSI 322 (809)
Q Consensus 244 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~L 322 (809)
+++.++++++.++ .+|..+ .++|+.|++++|.+++..|..+.++++|++|++++|++++..|. +..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4555566666555 555543 25677777777777766666677777777777777777665554 666666666666
Q ss_pred ccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCC
Q 040849 323 SMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLE 402 (809)
Q Consensus 323 s~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 402 (809)
++|.++... ..+. ++|++|++++|++.+..+..+.++++|++|+++
T Consensus 110 ~~n~l~~l~-------------------------------~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNHLVEIP-------------------------------PNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSCCCSCC-------------------------------SSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCcCCccC-------------------------------cccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 666554221 1111 236666666666665555556666666666666
Q ss_pred Cccce--ecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCcc
Q 040849 403 GNQFT--GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTG 480 (809)
Q Consensus 403 ~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 480 (809)
+|.++ +..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|++
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~---------- 221 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYR---------- 221 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSC----------
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCE----------
Confidence 66664 2445555555 56666666665553 333222 34444455555554444444444444444
Q ss_pred ccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhc
Q 040849 481 TIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFS 560 (809)
Q Consensus 481 ~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 560 (809)
|++++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 222 ---------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 222 ---------------LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp ---------------CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ---------------EECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 455555555444445555666666666666666 5566666666666666666666665555554
Q ss_pred CC------CCCCEEeCCCCCcc--cccccccccCCCCCeEEccCCc
Q 040849 561 SL------RGIENLDLSRNNLS--GRIPKYFENFLFLQNLNLSFNH 598 (809)
Q Consensus 561 ~l------~~L~~LdLs~N~l~--~~~p~~~~~l~~L~~l~ls~N~ 598 (809)
.. ..|+.|++++|.+. +..|..|..++.|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 42 45777777777776 5666777777777777777764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=280.52 Aligned_cols=288 Identities=23% Similarity=0.262 Sum_probs=166.3
Q ss_pred CCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC-CCCCCCCcEEEe
Q 040849 244 SLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSI 322 (809)
Q Consensus 244 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~L 322 (809)
+++.++++++.++ .+|..+ .++++.|++++|.+++..+..+.++++|++|++++|.+++..|. +..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3455555555554 455443 25677777777777766666677777777777777777766554 666666666666
Q ss_pred ccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCC
Q 040849 323 SMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLE 402 (809)
Q Consensus 323 s~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 402 (809)
++|.++... ..+. ++|++|++++|++.+..+..+.++++|++|+++
T Consensus 108 s~n~l~~l~-------------------------------~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 108 SKNQLKELP-------------------------------EKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CSSCCSBCC-------------------------------SSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCcCCccC-------------------------------hhhc---ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 666654221 1111 236667777777666666666667777777777
Q ss_pred Ccccee--cCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCcc
Q 040849 403 GNQFTG--RIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTG 480 (809)
Q Consensus 403 ~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 480 (809)
+|.++. ..+..+.++++|++|++++|++++ +|..+. ++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 776642 455566666666666666666653 333222 455555555555555555555555555555555555544
Q ss_pred ccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhc
Q 040849 481 TIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFS 560 (809)
Q Consensus 481 ~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 560 (809)
..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 231 -------------------------~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 231 -------------------------VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp -------------------------ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred -------------------------eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 44444445555555555555555 4455555555555555555555555444443
Q ss_pred C------CCCCCEEeCCCCCccc--ccccccccCCCCCeEEccCCc
Q 040849 561 S------LRGIENLDLSRNNLSG--RIPKYFENFLFLQNLNLSFNH 598 (809)
Q Consensus 561 ~------l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~l~ls~N~ 598 (809)
. ...|+.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2 2556667777776643 445666667777777777664
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-34 Score=323.96 Aligned_cols=356 Identities=17% Similarity=0.136 Sum_probs=230.9
Q ss_pred CCccEEeCCCCCCCccCCcc-ccccccCCccccCCCcCcc----cCCccccCCCcCcEEEcccCCCCCCCcccc-cCCC-
Q 040849 99 SFLRVLDLKNNSFRNEIPQE-IGYLFRLQFLWLDNNTFGG----QIPDNISHCVNLESLRLGFNELVGKVPRKL-GSLS- 171 (809)
Q Consensus 99 ~~L~~LdLs~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~- 171 (809)
++|++|||++|+++...... +..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888888877554333 6778888888888888774 345667777888888888888765444333 3344
Q ss_pred ---CCCEEEcccccCcc----cCCccCCCCCCCCEEEcccCcccccCccccc-----CCCCccEEEeecCcCCCCc----
Q 040849 172 ---KLRTLAVHYNNLSG----QIPSSFGNLSSLEVLSASANQFVGQIPKTLS-----QLKRMRFIGFGVNKLSGEI---- 235 (809)
Q Consensus 172 ---~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~---- 235 (809)
+|++|+|++|+++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888874 4577788888888888888888755444332 3567888888888887643
Q ss_pred chhccCCCCCceeccCCcccccccChhhh----cCCCCCcEEEccCcccccc----CCcccccCCCCceEecCCCcceee
Q 040849 236 PFSIYNLSSLNYFEFPVNQLQGSLPSDLG----FTLPNLERLNLGENQFTGP----IPASISNASHLMRLTIPINGFSGK 307 (809)
Q Consensus 236 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~ 307 (809)
+..+..+++|++|++++|.+++..+..+. ...++|++|++++|.+++. ++..+..+++|+.|++++|.++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 55566778888888888888755444333 2356899999999988864 466777888899999998887653
Q ss_pred C-----CC-CCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhc----cccCcEEEc
Q 040849 308 V-----PS-FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNL----STRLRILRV 377 (809)
Q Consensus 308 ~-----~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~----~~~L~~L~L 377 (809)
. +. +..+++|+.|++++|.++..... .+...+..+++|+.|++++|.+.+..+..+... .++|++|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 2 22 34577888888888877542110 122334456667777777776665544433332 134666666
Q ss_pred cCCccccc----CCccccCCCCCCeeeCCCccceecCCccccC-----CCCCCEEEeeCCeeec----ccCcCCcCCCCc
Q 040849 378 GNNQLFGN----IPSGLRNLVNLERLLLEGNQFTGRIPGSIGD-----LHKLQRLGLQGNKFLG----EIPSSIGNLTLL 444 (809)
Q Consensus 378 s~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L 444 (809)
++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 66666543 3444555566666666666655443332221 4455555555555554 444445555555
Q ss_pred cEEEcccccCcc
Q 040849 445 ITLSFDKNMLEG 456 (809)
Q Consensus 445 ~~L~L~~N~l~~ 456 (809)
++|++++|++++
T Consensus 401 ~~L~l~~N~i~~ 412 (461)
T 1z7x_W 401 RELDLSNNCLGD 412 (461)
T ss_dssp CEEECCSSSCCH
T ss_pred cEEECCCCCCCH
Confidence 555555555543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=286.36 Aligned_cols=289 Identities=20% Similarity=0.198 Sum_probs=216.6
Q ss_pred CCCCCCCCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcC
Q 040849 56 WNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTF 135 (809)
Q Consensus 56 W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 135 (809)
|.....+|.|.|+ |+. +++.++ .+|..+. ++|++|+|++|.+++..+..|+++++|++|+|++|.+
T Consensus 23 ~~~~~~~C~~~~~-c~~----------~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKG----------SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-EEC----------CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-eeC----------CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 4445678999987 753 334444 3565554 5899999999999987777999999999999999999
Q ss_pred cccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCC-ccCCCCCCCCEEEcccC-cccccCcc
Q 040849 136 GGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIP-SSFGNLSSLEVLSASAN-QFVGQIPK 213 (809)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~p~ 213 (809)
++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+ ..|.++++|++|++++| .+++..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 98888999999999999999999997766679999999999999999995444 47899999999999999 47777778
Q ss_pred cccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCC
Q 040849 214 TLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASH 293 (809)
Q Consensus 214 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 293 (809)
.|.++++|+.|++++|.+++..|..+..+++|++|++++|.++ .+|..+...+++|+.|++++|.+++..+..+..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--- 244 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST--- 244 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-------
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccc---
Confidence 8999999999999999999888888988889999999888885 566655545778888888888777543322211
Q ss_pred CceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCc
Q 040849 294 LMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLR 373 (809)
Q Consensus 294 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~ 373 (809)
...... ++
T Consensus 245 -----------------~~~~~~-------------------------------------------------------l~ 252 (353)
T 2z80_A 245 -----------------GETNSL-------------------------------------------------------IK 252 (353)
T ss_dssp -------------------CCCC-------------------------------------------------------CC
T ss_pred -----------------ccccch-------------------------------------------------------hh
Confidence 001111 23
Q ss_pred EEEccCCcccc----cCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeeccc
Q 040849 374 ILRVGNNQLFG----NIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEI 434 (809)
Q Consensus 374 ~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 434 (809)
.++++++.+.+ .+|..+..+++|++|++++|+++...+..|..+++|++|++++|++.+..
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 33333333322 34566777777888888888777433334577777888888887776543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-32 Score=320.15 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=91.9
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCC---CccCCcccc------------ccccC
Q 040849 61 HFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSF---RNEIPQEIG------------YLFRL 125 (809)
Q Consensus 61 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l---~~~~p~~~~------------~l~~L 125 (809)
-|++|.++.+.. .+.. .+.+ ......+..+.++++|++|+|+++.. .+.+|..++ .+++|
T Consensus 40 vck~W~~~~~~~--~~~l--~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 40 VCRRWFKIDSET--REHV--TMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp SCHHHHHHHHHH--CCEE--EESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HhHHHHHhhhcc--ccEE--EEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 355899986542 1222 2221 22333344556788899999887532 133343332 55666
Q ss_pred CccccCCCcCcccCCccccCC--CcCcEEEcccCCC-CC-CCcccccCCCCCCEEEcccccCccc----CCccCCCCCCC
Q 040849 126 QFLWLDNNTFGGQIPDNISHC--VNLESLRLGFNEL-VG-KVPRKLGSLSKLRTLAVHYNNLSGQ----IPSSFGNLSSL 197 (809)
Q Consensus 126 ~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l-~~-~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L 197 (809)
++|+|++|.+++..+..+... .+|++|+|++|.- .. .++.....+++|++|+|++|.+++. ++..+.++++|
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 666666666555544444442 2366666665541 10 0111123455666666666655443 22233445555
Q ss_pred CEEEcccCccc----ccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccC
Q 040849 198 EVLSASANQFV----GQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251 (809)
Q Consensus 198 ~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 251 (809)
++|++++|.++ +.++..+.++++|+.|++++|.+.+ ++..+.++++|+.|+++
T Consensus 195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 66666555554 2223333445555555555555443 33444444555555444
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=269.50 Aligned_cols=225 Identities=20% Similarity=0.248 Sum_probs=207.0
Q ss_pred ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEc
Q 040849 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449 (809)
Q Consensus 370 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 449 (809)
.+++.|++++|++. .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45899999999998 67778888999999999999998 88888999999999999999998 77888999999999999
Q ss_pred ccccCcccCCccccC---------CCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEE
Q 040849 450 DKNMLEGSIPSSLGK---------CQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVL 520 (809)
Q Consensus 450 ~~N~l~~~~p~~l~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L 520 (809)
++|++.+.+|..+.. +++|++|++++|+++ .+|..+..+++| ++|++++|++++ +|..+..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEE
Confidence 999888888887765 999999999999999 889999999999 799999999995 56679999999999
Q ss_pred EccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccc
Q 040849 521 DVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 521 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 600 (809)
+|++|++.+.+|..++++++|++|+|++|++.+.+|..+.++++|+.|||++|++.+.+|..+.++++|+.+++..|.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-32 Score=314.65 Aligned_cols=428 Identities=14% Similarity=0.078 Sum_probs=205.7
Q ss_pred cCCccccccccCCccccCCCcC---cccCCcccc------------CCCcCcEEEcccCCCCCCCcccccCC--CCCCEE
Q 040849 114 EIPQEIGYLFRLQFLWLDNNTF---GGQIPDNIS------------HCVNLESLRLGFNELVGKVPRKLGSL--SKLRTL 176 (809)
Q Consensus 114 ~~p~~~~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L 176 (809)
..+..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3444566777788888876532 133443333 45556666666655554444444332 235555
Q ss_pred Eccccc-Ccc-cCCccCCCCCCCCEEEcccCccccc----CcccccCCCCccEEEeecCcCCCCcchhccCCCCCceecc
Q 040849 177 AVHYNN-LSG-QIPSSFGNLSSLEVLSASANQFVGQ----IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEF 250 (809)
Q Consensus 177 ~Ls~N~-l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 250 (809)
+|++|. ++. .++....++++|++|+|++|.+++. ++..+..+++|+.|++++|.+++...
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~-------------- 209 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP-------------- 209 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH--------------
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH--------------
Confidence 555554 110 1111123445555555555555433 22223334445555554444432111
Q ss_pred CCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcce---eeC-CCCCCCCCCcEEEecccc
Q 040849 251 PVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFS---GKV-PSFGNLHKLQWVSISMNH 326 (809)
Q Consensus 251 ~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~---~~~-~~~~~l~~L~~L~Ls~n~ 326 (809)
+.++..+. .+++|++|++++|.+.+ +|..+..+++|+.|+++..... +.. ..+..+++|+.++++.+.
T Consensus 210 ------~~l~~~~~-~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (592)
T 3ogk_B 210 ------KDLETIAR-NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281 (592)
T ss_dssp ------HHHHHHHH-HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC
T ss_pred ------HHHHHHHh-hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc
Confidence 12222222 45666666666666654 4455666666666666542211 001 114445555555554432
Q ss_pred CCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCC-ccccCCCCCCeeeCCCcc
Q 040849 327 LGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIP-SGLRNLVNLERLLLEGNQ 405 (809)
Q Consensus 327 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~ 405 (809)
. +.+|..+..++ +|++|++++|.+++... ..+..+++|++|+++++.
T Consensus 282 ~-------------------------------~~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~ 329 (592)
T 3ogk_B 282 P-------------------------------NEMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329 (592)
T ss_dssp T-------------------------------TTGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG
T ss_pred h-------------------------------hHHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc
Confidence 1 12222222222 35555555555443222 224556666666666322
Q ss_pred ceecCCccccCCCCCCEEEee-----------CCeeeccc-CcCCcCCCCccEEEcccccCcccCCccccC-CCCCcEEe
Q 040849 406 FTGRIPGSIGDLHKLQRLGLQ-----------GNKFLGEI-PSSIGNLTLLITLSFDKNMLEGSIPSSLGK-CQNLILLG 472 (809)
Q Consensus 406 l~~~~p~~~~~l~~L~~L~Ls-----------~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~ 472 (809)
..+.++.....+++|++|+++ .|.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+
T Consensus 330 ~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 330 GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence 222233333455666666666 24444321 111233556666666666665554444443 56666666
Q ss_pred Cc----CCcCccc-----cCcchhcccCCceEEEccCC--cCcccCCCCcc-CCCCCCEEEccccccccc-cCccccCCC
Q 040849 473 LS----NNNLTGT-----IPTEVIGLSSLSIYLDLSQN--QLNGTLPSNFG-ILKNLGVLDVSENKLSGE-IPNSLGSCV 539 (809)
Q Consensus 473 Ls----~N~l~~~-----~p~~~~~l~~l~~~L~Ls~N--~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~-~p~~~~~l~ 539 (809)
++ .|++++. ++..+.++++| +.|+++++ .+++..+..+. .+++|+.|+|++|++++. ++..+.+++
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCC-CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 64 4455532 22334445555 45555432 23333222222 256666666666666642 334445666
Q ss_pred CCCEEeCcCCccccc-cchhhcCCCCCCEEeCCCCCccccccccc-ccCCCCCeEEccC
Q 040849 540 RLEQLGMNGNFFQGN-IPSSFSSLRGIENLDLSRNNLSGRIPKYF-ENFLFLQNLNLSF 596 (809)
Q Consensus 540 ~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p~~~-~~l~~L~~l~ls~ 596 (809)
+|++|+|++|.+++. ++..+..+++|+.|+|++|+++..-...+ ..++.+....+..
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 677777777766544 33334556667777777776665432222 2345554444443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=264.55 Aligned_cols=233 Identities=26% Similarity=0.275 Sum_probs=205.4
Q ss_pred ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceec--CCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEE
Q 040849 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGR--IPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447 (809)
Q Consensus 370 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 447 (809)
+++++|++++|++....+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+ +|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 4589999999999866666688999999999999998743 35667788999999999999884 56668889999999
Q ss_pred EcccccCcccCC-ccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcc-cCCCCccCCCCCCEEEcccc
Q 040849 448 SFDKNMLEGSIP-SSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG-TLPSNFGILKNLGVLDVSEN 525 (809)
Q Consensus 448 ~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N 525 (809)
++++|++++..+ ..+..+++|++|++++|++++..|..+.+++++ ++|++++|++++ .+|..+..+++|++|+|++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 999999987665 678899999999999999998888888888998 789999999987 67889999999999999999
Q ss_pred ccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCC-CCCeEEccCCcccccCC
Q 040849 526 KLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFL-FLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 526 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~-~L~~l~ls~N~l~g~~p 604 (809)
++++..|..|..+++|++|+|++|++++..+..|..+++|+.||+++|++++.+|..+..++ +|++|++++|++++..+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99988899999999999999999999988888899999999999999999999999999985 89999999999987654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=262.47 Aligned_cols=229 Identities=24% Similarity=0.255 Sum_probs=163.9
Q ss_pred cEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccc
Q 040849 373 RILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452 (809)
Q Consensus 373 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 452 (809)
+.++.+++.+.. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666666653 34332 356777777777777666666777777777777777777666667777777777777777
Q ss_pred c-CcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccccccc
Q 040849 453 M-LEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEI 531 (809)
Q Consensus 453 ~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 531 (809)
. +....|..+..+++|++|++++|++++..|..+.++++| ++|++++|++++..+..|..+++|++|+|++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 5 665556677777777777777777776666666677777 67777777777666666777777778888877777666
Q ss_pred CccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCC
Q 040849 532 PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 532 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
+..|..+++|++|++++|.+++..|..|.++++|+.|++++|++++..+..|..+++|++|++++|++.+..+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 66677777788888888887777777777777888888888888777667777777888888888877765553
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=274.35 Aligned_cols=232 Identities=24% Similarity=0.266 Sum_probs=214.0
Q ss_pred ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEc
Q 040849 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449 (809)
Q Consensus 370 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 449 (809)
+++++|++++|++++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 46999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred ccccCcccCCccccCCCCCcEEeCcCCcCccccC-cchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccc
Q 040849 450 DKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIP-TEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLS 528 (809)
Q Consensus 450 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 528 (809)
++|++++..+..|.++++|+.|++++|+..+.++ ..+.++++| ++|++++|++++. | .+..+++|+.|+|++|+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 9999998888899999999999999954444554 468889999 8999999999965 4 5889999999999999999
Q ss_pred cccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCC
Q 040849 529 GEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 529 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
+..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++.+...
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=271.49 Aligned_cols=280 Identities=16% Similarity=0.136 Sum_probs=164.2
Q ss_pred CCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccc
Q 040849 291 ASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLST 370 (809)
Q Consensus 291 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~ 370 (809)
++.....+.++++++.....+. ++|+.|++++|.+++. .+..+..++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~------------------------------~~~~~~~l~- 76 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYI------------------------------SNSDLQRCV- 76 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEE------------------------------CTTTTTTCT-
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCccc------------------------------CHHHhccCC-
Confidence 3444456666666664332222 3556666666655543 222333332
Q ss_pred cCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccC-cCCcCCCCccEEEc
Q 040849 371 RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIP-SSIGNLTLLITLSF 449 (809)
Q Consensus 371 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L 449 (809)
+|++|++++|++++..|..|.++++|++|++++|++++..+..+.++++|++|++++|++++..+ ..+.++++|++|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEEC
Confidence 25555555555555555555555555555555555554333345555555555555555553332 34555555666666
Q ss_pred ccc-cCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccc
Q 040849 450 DKN-MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLS 528 (809)
Q Consensus 450 ~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 528 (809)
++| .+.+..+..+.++++|++|++++|++++..|..+..++++ ++|++++|+++...+..+..+++|+.|++++|+++
T Consensus 157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-CeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 555 3444445555555566666666666555555555555555 55666666654333333344566666666666666
Q ss_pred cccCcccc---CCCCCCEEeCcCCcccc----ccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccc
Q 040849 529 GEIPNSLG---SCVRLEQLGMNGNFFQG----NIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 529 ~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
+..+..+. ..+.++.++|++|.+++ .+|..+..+++|+.||+++|+++...+..|.++++|++|++++|++.|
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 55444332 35567777777777776 467788888888888888888885444446888888899999888888
Q ss_pred cCC
Q 040849 602 EVP 604 (809)
Q Consensus 602 ~~p 604 (809)
.+|
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 766
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=271.01 Aligned_cols=232 Identities=26% Similarity=0.300 Sum_probs=212.3
Q ss_pred ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEc
Q 040849 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449 (809)
Q Consensus 370 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 449 (809)
+.++.|+|++|++.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45999999999999988899999999999999999999888899999999999999999999888888999999999999
Q ss_pred ccccCcccCCccccCCCCCcEEeCcCCcCccccC-cchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccc
Q 040849 450 DKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIP-TEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLS 528 (809)
Q Consensus 450 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 528 (809)
++|.+++..+..|.++++|+.|++++|+..+.++ ..+.++++| ++|++++|+++. +| .+..+++|+.|||++|+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCcc-cc-ccCCCcccCEEECCCCccC
Confidence 9999998888899999999999999955444454 468889999 799999999984 44 4889999999999999999
Q ss_pred cccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCC
Q 040849 529 GEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 529 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
+..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++.+...
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-30 Score=273.30 Aligned_cols=246 Identities=21% Similarity=0.225 Sum_probs=197.4
Q ss_pred cCCccEEeccccccccccchhhhhccccCcEEEccCCcc-cccCCcccc-------CCCCCCeeeCCCccceecCCccc-
Q 040849 344 ASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQL-FGNIPSGLR-------NLVNLERLLLEGNQFTGRIPGSI- 414 (809)
Q Consensus 344 ~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~~- 414 (809)
.++|+.+++++|.+ .+|..+... |+.|++++|++ ...+|..+. ++++|++|+|++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34566666667766 566655544 77888888888 445666555 78899999999999988888776
Q ss_pred -cCCCCCCEEEeeCCeeecccCcCCcCC-----CCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccc--cCcch
Q 040849 415 -GDLHKLQRLGLQGNKFLGEIPSSIGNL-----TLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGT--IPTEV 486 (809)
Q Consensus 415 -~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~ 486 (809)
..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..|.++++|++|++++|++.+. +|..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8889999999999998877 7777766 8899999999999888888899999999999999988765 33344
Q ss_pred --hcccCCceEEEccCCcCccc---CCCCccCCCCCCEEEccccccccccC-ccccCCCCCCEEeCcCCccccccchhhc
Q 040849 487 --IGLSSLSIYLDLSQNQLNGT---LPSNFGILKNLGVLDVSENKLSGEIP-NSLGSCVRLEQLGMNGNFFQGNIPSSFS 560 (809)
Q Consensus 487 --~~l~~l~~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 560 (809)
..+++| ++|++++|++++. ....+..+++|++|||++|++++.+| ..+..+++|++|+|++|+++ .+|..+.
T Consensus 196 ~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 196 CPLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CTTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HhccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 677888 7899999998832 22345678899999999999998775 55677899999999999998 7777776
Q ss_pred CCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccc
Q 040849 561 SLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 561 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
++|+.|||++|++++. |. +..+++|++|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8899999999999977 65 8899999999999999885
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=258.54 Aligned_cols=257 Identities=20% Similarity=0.214 Sum_probs=197.5
Q ss_pred CccEEeccccccccccchhhhhccccCcEEEccCCcccc--cCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEE
Q 040849 346 RLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFG--NIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRL 423 (809)
Q Consensus 346 ~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 423 (809)
+|+.|++++|.+....+..+..+ ++|++|++++|++.. ..|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCEEECCCCccCccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 34444444444442222223333 347777887777763 23566777888888888888887 456668888888999
Q ss_pred EeeCCeeecccC-cCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCcc-ccCcchhcccCCceEEEccCC
Q 040849 424 GLQGNKFLGEIP-SSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTG-TIPTEVIGLSSLSIYLDLSQN 501 (809)
Q Consensus 424 ~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~L~Ls~N 501 (809)
++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+..+++| ++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-TFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-CEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC-CEEECCCC
Confidence 999888887655 578888889999999999888888888888999999999999886 578888888888 78999999
Q ss_pred cCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCC-CCCEEeCCCCCcccccc
Q 040849 502 QLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLR-GIENLDLSRNNLSGRIP 580 (809)
Q Consensus 502 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~LdLs~N~l~~~~p 580 (809)
++++..|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++++..|..+..++ +|+.|+|++|++++..+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99988888999999999999999999988888899999999999999999999999999984 89999999999987543
Q ss_pred c--ccccCCCCCeEEccCCcccccCCC
Q 040849 581 K--YFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 581 ~--~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
. ...-+...+.+.+..+.+.+..|.
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hHHHHHHHHhhhhhhccccccccCCch
Confidence 1 112223344455556666666553
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-30 Score=275.31 Aligned_cols=246 Identities=20% Similarity=0.223 Sum_probs=132.0
Q ss_pred CCCccEEeCCCCCCCccCCccccccccCCccccCCCcC-cccCCcccc-------CCCcCcEEEcccCCCCCCCcccc--
Q 040849 98 LSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTF-GGQIPDNIS-------HCVNLESLRLGFNELVGKVPRKL-- 167 (809)
Q Consensus 98 l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l-- 167 (809)
.++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|+|++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34555555555555 455544443 55556665555 334444443 45556666666666555555544
Q ss_pred cCCCCCCEEEcccccCcccCCccCCCC-----CCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCC--cchhc-
Q 040849 168 GSLSKLRTLAVHYNNLSGQIPSSFGNL-----SSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGE--IPFSI- 239 (809)
Q Consensus 168 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~~~~l- 239 (809)
..+++|++|+|++|++++. |..++.+ ++|++|++++|++++..|..|+++++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 5555666666666655544 5444444 5566666666665555555555566666666666555543 22222
Q ss_pred -cCCCCCceeccCCccccc--ccChhhhcCCCCCcEEEccCccccccCC-cccccCCCCceEecCCCcceeeCCC-CCCC
Q 040849 240 -YNLSSLNYFEFPVNQLQG--SLPSDLGFTLPNLERLNLGENQFTGPIP-ASISNASHLMRLTIPINGFSGKVPS-FGNL 314 (809)
Q Consensus 240 -~~l~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l 314 (809)
..+++|++|++++|++++ .++..++..+++|++|++++|++++..| ..+..+++|+.|++++|+++ .+|. +.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 555566666666665552 2333333345566666666666655443 33444556666666666665 3333 33
Q ss_pred CCCcEEEeccccCCCCCCCchhhhhcccccCCccEEecccccccc
Q 040849 315 HKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGG 359 (809)
Q Consensus 315 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 359 (809)
++|+.|++++|++++.. .+..+++|+.+++++|.+++
T Consensus 274 ~~L~~L~Ls~N~l~~~p--------~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNP--------SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSCC--------CTTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCCh--------hHhhCCCCCEEeccCCCCCC
Confidence 55666666666665431 13345556666666665543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=253.44 Aligned_cols=252 Identities=20% Similarity=0.199 Sum_probs=217.4
Q ss_pred EEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCC
Q 040849 349 LLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGN 428 (809)
Q Consensus 349 ~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 428 (809)
.++.+.+.+. .+|.. .+++|++|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 15 ~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 3444444443 23332 2346999999999999888889999999999999999999988999999999999999999
Q ss_pred e-eecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccC
Q 040849 429 K-FLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTL 507 (809)
Q Consensus 429 ~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~ 507 (809)
+ +.+..|..|..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..+..+++| +.|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCcccccC
Confidence 7 887778899999999999999999999889999999999999999999997767778889999 79999999999888
Q ss_pred CCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCC
Q 040849 508 PSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFL 587 (809)
Q Consensus 508 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~ 587 (809)
+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|+++...+.. .-..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 888999999999999999999999999999999999999999999988888999999999999999998765532 1112
Q ss_pred CCCeEEccCCcccccCCCC
Q 040849 588 FLQNLNLSFNHFEGEVPIK 606 (809)
Q Consensus 588 ~L~~l~ls~N~l~g~~p~~ 606 (809)
.++.+..+.|.+.+..|..
T Consensus 249 ~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHHCCSEECCCBEEESGG
T ss_pred HHHhcccccCccccCCchH
Confidence 3445557788888887753
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=263.69 Aligned_cols=249 Identities=24% Similarity=0.235 Sum_probs=222.4
Q ss_pred CcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEccc
Q 040849 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK 451 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 451 (809)
...++.+++.++. +|..+. +++++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 5678888888874 565553 6899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccC-CcCcccCCCCccCCCCCCEEEccccccccc
Q 040849 452 NMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQ-NQLNGTLPSNFGILKNLGVLDVSENKLSGE 530 (809)
Q Consensus 452 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 530 (809)
|++++..+..|..+++|++|+|++|++++..+..+..+++| +.|++++ |.+....+..|..+++|++|+|++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99998888889999999999999999997667788899999 7999999 556555566799999999999999999954
Q ss_pred cCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC-CCC
Q 040849 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK-GVF 609 (809)
Q Consensus 531 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~-~~~ 609 (809)
| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4 5889999999999999999999999999999999999999999999999999999999999999999655532 346
Q ss_pred CCCCcccccCCCCCCCC
Q 040849 610 SNSSAVSLDGNDNLCGG 626 (809)
Q Consensus 610 ~~~~~~~~~~n~~lc~~ 626 (809)
..+..+.+.+||..|..
T Consensus 290 ~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTCCEEECCSSCEECST
T ss_pred cCCCEEEccCCCcCCCC
Confidence 67788899999988853
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=262.64 Aligned_cols=249 Identities=24% Similarity=0.239 Sum_probs=223.0
Q ss_pred CcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEccc
Q 040849 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK 451 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 451 (809)
...++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 567888888887 4566554 6899999999999999999999999999999999999998889999999999999999
Q ss_pred ccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCC-cCcccCCCCccCCCCCCEEEccccccccc
Q 040849 452 NMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQN-QLNGTLPSNFGILKNLGVLDVSENKLSGE 530 (809)
Q Consensus 452 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 530 (809)
|++++..+..|..+++|++|+|++|++++..+..+..+++| +.|++++| .+....+..|..+++|++|+|++|+++ .
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL-RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc-CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 99998888889999999999999999997777789999999 79999995 555555668999999999999999999 5
Q ss_pred cCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC-CCC
Q 040849 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK-GVF 609 (809)
Q Consensus 531 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~-~~~ 609 (809)
+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|++++|++++..+.. ..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 4889999999999999999999999999999999999999999999999999999999999999999755532 346
Q ss_pred CCCCcccccCCCCCCCC
Q 040849 610 SNSSAVSLDGNDNLCGG 626 (809)
Q Consensus 610 ~~~~~~~~~~n~~lc~~ 626 (809)
..+..+.+.+||..|..
T Consensus 279 ~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTCCEEECCSSCEECSS
T ss_pred cCCCEEEcCCCCccCCC
Confidence 67788899999998853
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=274.74 Aligned_cols=88 Identities=25% Similarity=0.375 Sum_probs=60.6
Q ss_pred CCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeC
Q 040849 394 VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGL 473 (809)
Q Consensus 394 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 473 (809)
++|++|++++|++++ +| ..+++|++|++++|++++ +|. .+++|+.|++++|+|+ .+|..+.++++|+.|+|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 456666666666654 33 344667777777777763 443 4567777888888777 56777888888888888
Q ss_pred cCCcCccccCcchhccc
Q 040849 474 SNNNLTGTIPTEVIGLS 490 (809)
Q Consensus 474 s~N~l~~~~p~~~~~l~ 490 (809)
++|.+++.+|..+..++
T Consensus 292 ~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 292 EGNPLSERTLQALREIT 308 (622)
T ss_dssp CSCCCCHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhcc
Confidence 88888877777665554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=242.11 Aligned_cols=217 Identities=23% Similarity=0.276 Sum_probs=167.9
Q ss_pred CCCCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccC
Q 040849 60 RHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQI 139 (809)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 139 (809)
.++|.|.|+.|+-. ..++.++++++.++. +|..+. +.|++|+|++|.+++..+..|+++++|++|+|++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47999999999643 456678888888884 666554 57889999999998777778888999999999999888666
Q ss_pred CccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCC
Q 040849 140 PDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLK 219 (809)
Q Consensus 140 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 219 (809)
+..|.++++|++|+|++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 66678888899999998888877777788888888888888888877777788888888888888888877666788888
Q ss_pred CccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCcccc
Q 040849 220 RMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFT 281 (809)
Q Consensus 220 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~ 281 (809)
+|+.|++++|.+++..+..+..+++|++|++++|+++ .+|...+..+++|+.|++++|.+.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 8888888888887766666666666666666666666 333333335566666666666554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=251.78 Aligned_cols=238 Identities=21% Similarity=0.160 Sum_probs=148.1
Q ss_pred ccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEee
Q 040849 347 LELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426 (809)
Q Consensus 347 L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 426 (809)
++..+++.+.+...++..+ ...++|++|++++|++++..|..+..+++|++|+|++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHH-TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHh-ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 4444555555543332222 223346777777777766666666777777777777777765544 6666777777777
Q ss_pred CCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCccc
Q 040849 427 GNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGT 506 (809)
Q Consensus 427 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~ 506 (809)
+|++++.. ..++|++|++++|++++..+.. +++|+.|++++|++++..|..+..++++ ++|++++|++++.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCcc
Confidence 77766433 2256777777777776554433 4566777777777766556666666666 5677777777666
Q ss_pred CCCCc-cCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCccccccccccc
Q 040849 507 LPSNF-GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFEN 585 (809)
Q Consensus 507 ~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 585 (809)
.+..+ ..+++|++|+|++|++++..+ ...+++|++|+|++|++++..+ .+..+++|+.||+++|++++ +|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhc
Confidence 55554 356677777777777765422 2236667777777777765433 36666777777777777763 4556666
Q ss_pred CCCCCeEEccCCccc
Q 040849 586 FLFLQNLNLSFNHFE 600 (809)
Q Consensus 586 l~~L~~l~ls~N~l~ 600 (809)
+++|+.|++++|+++
T Consensus 236 l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 236 SQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECTTCCCB
T ss_pred CCCCCEEEccCCCcc
Confidence 677777777777766
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=256.24 Aligned_cols=249 Identities=18% Similarity=0.188 Sum_probs=213.8
Q ss_pred cccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCC
Q 040849 342 VNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQ 421 (809)
Q Consensus 342 ~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 421 (809)
..+++|+.|++++|.+.+..|..+..+.. |++|++++|++++..+ +..+++|++|++++|++++.. ..++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 34567888888888888777777777754 9999999999987665 899999999999999998644 338999
Q ss_pred EEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchh-cccCCceEEEccC
Q 040849 422 RLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQ 500 (809)
Q Consensus 422 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~l~~~L~Ls~ 500 (809)
+|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|++++..|..+. .++++ ++|++++
T Consensus 103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~ 178 (317)
T 3o53_A 103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQY 178 (317)
T ss_dssp EEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTT
T ss_pred EEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCC
Confidence 9999999999876654 57899999999999998888999999999999999999987777775 67888 8999999
Q ss_pred CcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcc-ccc
Q 040849 501 NQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS-GRI 579 (809)
Q Consensus 501 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~ 579 (809)
|++++..+ ...+++|++|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred CcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence 99997633 3358999999999999995 4556999999999999999999 57888999999999999999999 888
Q ss_pred ccccccCCCCCeEEcc-CCcccccCCCC
Q 040849 580 PKYFENFLFLQNLNLS-FNHFEGEVPIK 606 (809)
Q Consensus 580 p~~~~~l~~L~~l~ls-~N~l~g~~p~~ 606 (809)
|..+..++.|+.++++ .+.++|..|..
T Consensus 255 ~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred HHHHhccccceEEECCCchhccCCchhc
Confidence 9999999999999999 55677766643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=269.90 Aligned_cols=219 Identities=22% Similarity=0.188 Sum_probs=187.6
Q ss_pred cCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcc
Q 040849 371 RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450 (809)
Q Consensus 371 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 450 (809)
+|+.|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 59999999999998888889999999999999999987766 8899999999999999986543 2789999999
Q ss_pred cccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCcc-CCCCCCEEEcccccccc
Q 040849 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFG-ILKNLGVLDVSENKLSG 529 (809)
Q Consensus 451 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~ 529 (809)
+|.+++..+.. +++|+.|++++|++++..|..+..+++| +.|+|++|++++.+|..+. .+++|+.|+|++|.+++
T Consensus 108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99998776543 5789999999999998888888889998 7899999999988888776 78999999999999987
Q ss_pred ccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccc-ccCC
Q 040849 530 EIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE-GEVP 604 (809)
Q Consensus 530 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~-g~~p 604 (809)
..+ +..+++|+.|+|++|.+++.+|. |..+++|+.|||++|++++ +|..+..+++|+.|++++|++. +.+|
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 743 33589999999999999976554 8899999999999999996 6777888999999999999998 4443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-27 Score=263.15 Aligned_cols=236 Identities=18% Similarity=0.182 Sum_probs=175.6
Q ss_pred cCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEE
Q 040849 344 ASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRL 423 (809)
Q Consensus 344 ~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 423 (809)
+++|+.|++++|.+.+..|..+..++. |++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 447888888888888777777766654 8888888888876655 7778888888888888875443 2778888
Q ss_pred EeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchh-cccCCceEEEccCCc
Q 040849 424 GLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYLDLSQNQ 502 (809)
Q Consensus 424 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~l~~~L~Ls~N~ 502 (809)
++++|.+++..+.. +++|+.|++++|.+++..|..+..+++|++|+|++|++++..|..+. .+++| +.|+|++|.
T Consensus 105 ~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSC
T ss_pred ECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCc
Confidence 88888887766543 46778888888888877777777788888888888888877777765 56777 678888888
Q ss_pred CcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcc-ccccc
Q 040849 503 LNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS-GRIPK 581 (809)
Q Consensus 503 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~ 581 (809)
+++..+ +..+++|+.|+|++|++++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ +.+|.
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 876633 33577888888888888754 4447778888888888888885 5667777888888888888877 66677
Q ss_pred ccccCCCCCeEEcc
Q 040849 582 YFENFLFLQNLNLS 595 (809)
Q Consensus 582 ~~~~l~~L~~l~ls 595 (809)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 77777766666665
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=238.70 Aligned_cols=210 Identities=22% Similarity=0.204 Sum_probs=158.7
Q ss_pred CCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeC
Q 040849 394 VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGL 473 (809)
Q Consensus 394 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 473 (809)
++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666777777666666656666777777777777766666666666777777777777777666666777777777777
Q ss_pred cCCcCccccCcchhcccCCceEEEccCCcCccc-CCCCccCCCCCCEEEccccccccccCccccCCCCCC----EEeCcC
Q 040849 474 SNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGT-LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE----QLGMNG 548 (809)
Q Consensus 474 s~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~ 548 (809)
++|++++..+..+..+++| ++|++++|++++. +|..+..+++|++|+|++|++++..+..+..+++|+ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 7777765555566667777 6777777777653 577788888888888888888877777777777776 899999
Q ss_pred CccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCC
Q 040849 549 NFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 549 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
|.+++..+..+.. .+|+.|++++|++++..+..|..+++|++|++++|++++..|.
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 9998777666655 4799999999999988888889999999999999999987764
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=258.19 Aligned_cols=268 Identities=28% Similarity=0.308 Sum_probs=152.3
Q ss_pred CCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEec
Q 040849 244 SLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSIS 323 (809)
Q Consensus 244 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls 323 (809)
.++.|++++|.++ .+|..++ ++|+.|++++|.++ .+|. .+++|+.|++++|.+++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV--LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC--CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC--CCCCCCEEECc
Confidence 3556666666665 5555432 45666666666655 2333 34455555555555543 222 33444444444
Q ss_pred cccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCC
Q 040849 324 MNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEG 403 (809)
Q Consensus 324 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 403 (809)
+|.+++. |. ..++|+.|++++|++++ +|.. +++|++|++++
T Consensus 110 ~N~l~~l-------------------------------~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 110 SNPLTHL-------------------------------PA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD 150 (622)
T ss_dssp SCCCCCC-------------------------------CC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred CCcCCCC-------------------------------CC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence 4444332 11 12346666666666664 3332 36666777777
Q ss_pred ccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccC
Q 040849 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIP 483 (809)
Q Consensus 404 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 483 (809)
|++++ +|. .+++|+.|++++|++++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|+++ .+|
T Consensus 151 N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~ 217 (622)
T 3g06_A 151 NQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLP 217 (622)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCC
T ss_pred CcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccC
Confidence 76663 232 23566667777776664 33 335666677777776664 3322 356667777777666 344
Q ss_pred cchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCC
Q 040849 484 TEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLR 563 (809)
Q Consensus 484 ~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 563 (809)
.. .++| +.|++++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..|.+++
T Consensus 218 ~~---~~~L-~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 218 AL---PSGL-KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp CC---CTTC-CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred CC---CCCC-CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 32 2445 566777776664 33 34466777777777776 3444 4566777777777777 5566677777
Q ss_pred CCCEEeCCCCCcccccccccccCC
Q 040849 564 GIENLDLSRNNLSGRIPKYFENFL 587 (809)
Q Consensus 564 ~L~~LdLs~N~l~~~~p~~~~~l~ 587 (809)
+|+.|+|++|++++.+|..+..++
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHHHhcc
Confidence 777777777777777666665543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-29 Score=291.62 Aligned_cols=443 Identities=16% Similarity=0.104 Sum_probs=227.5
Q ss_pred cEEeCCCCCCCccCCccccccccCCccccCCCcCcc---cCCcc------------ccCCCcCcEEEcccCCCCCCCccc
Q 040849 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGG---QIPDN------------ISHCVNLESLRLGFNELVGKVPRK 166 (809)
Q Consensus 102 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---~~p~~------------~~~l~~L~~L~Ls~N~l~~~~p~~ 166 (809)
+.++++..... ..+..+.++++|++|+|+++.... ..|.. ...+++|++|+|++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 35666554322 223346778889999998875321 12221 234667777777777766555555
Q ss_pred cc-CCCCCCEEEcccc-cCccc-CCccCCCCCCCCEEEcccCcccccCccccc----CCCCccEEEeecCcCCCCcchhc
Q 040849 167 LG-SLSKLRTLAVHYN-NLSGQ-IPSSFGNLSSLEVLSASANQFVGQIPKTLS----QLKRMRFIGFGVNKLSGEIPFSI 239 (809)
Q Consensus 167 l~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~~L~~L~L~~n~l~~~~~~~l 239 (809)
+. .+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|+.|++++|. .......+
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence 54 4667777777766 44322 333344566777777777766554433332 44456666665554 11101111
Q ss_pred cCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCc-------ceeeCCCCC
Q 040849 240 YNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPING-------FSGKVPSFG 312 (809)
Q Consensus 240 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~-------l~~~~~~~~ 312 (809)
..+...+++|++|++++|...+.+|..+..+++|+.|+++.+. +.+..+.+.
T Consensus 204 ---------------------~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 204 ---------------------ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp ---------------------HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred ---------------------HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 1111123445555555442111234444444444444433221 111111123
Q ss_pred CCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCC-cccc
Q 040849 313 NLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIP-SGLR 391 (809)
Q Consensus 313 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~ 391 (809)
++++|+.+. .+... -.+.+|..+..+ ++|+.|++++|.+++... ..+.
T Consensus 263 ~~~~L~~Ls-----------------------------~~~~~-~~~~l~~~~~~~-~~L~~L~L~~~~l~~~~l~~~~~ 311 (594)
T 2p1m_B 263 GCKELRCLS-----------------------------GFWDA-VPAYLPAVYSVC-SRLTTLNLSYATVQSYDLVKLLC 311 (594)
T ss_dssp TCTTCCEEE-----------------------------CCBTC-CGGGGGGGHHHH-TTCCEEECTTCCCCHHHHHHHHT
T ss_pred cCCCccccc-----------------------------CCccc-chhhHHHHHHhh-CCCCEEEccCCCCCHHHHHHHHh
Confidence 333333331 11110 011122222222 235555555555443211 1234
Q ss_pred CCCCCCeeeCCCcccee-cCCccccCCCCCCEEEeeC---------CeeecccCcCCc-CCCCccEEEcccccCcccCCc
Q 040849 392 NLVNLERLLLEGNQFTG-RIPGSIGDLHKLQRLGLQG---------NKFLGEIPSSIG-NLTLLITLSFDKNMLEGSIPS 460 (809)
Q Consensus 392 ~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~---------N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~ 460 (809)
.+++|++|++++| ++. .++.....+++|++|++++ +.+++.....+. .+++|+.|++..|.+++..+.
T Consensus 312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH
T ss_pred cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH
Confidence 5555555555555 221 1111222355566665522 333322222222 255666666666666554444
Q ss_pred ccc-CCCCCcEEeCc--C----CcCcc-----ccCcchhcccCCceEEEccCCcCcccCCCCccC-CCCCCEEEcccccc
Q 040849 461 SLG-KCQNLILLGLS--N----NNLTG-----TIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGI-LKNLGVLDVSENKL 527 (809)
Q Consensus 461 ~l~-~l~~L~~L~Ls--~----N~l~~-----~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l 527 (809)
.+. .+++|+.|+++ + |++++ .++..+..+++| +.|++++ .+++..+..+.. +++|+.|+|++|.+
T Consensus 391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L-~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i 468 (594)
T 2p1m_B 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL-RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD 468 (594)
T ss_dssp HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC-CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc-cEEeecC-cccHHHHHHHHHhchhccEeeccCCCC
Confidence 443 35666666666 3 34441 112224455666 6777766 555443334443 77888888888888
Q ss_pred ccccCccc-cCCCCCCEEeCcCCccccccch-hhcCCCCCCEEeCCCCCccccccccc-ccCCCCCeEEccCCcccc
Q 040849 528 SGEIPNSL-GSCVRLEQLGMNGNFFQGNIPS-SFSSLRGIENLDLSRNNLSGRIPKYF-ENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 528 ~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~~~p~~~-~~l~~L~~l~ls~N~l~g 601 (809)
++..+..+ .++++|++|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+...+..+....
T Consensus 469 ~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp SHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred cHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 76666555 6688899999999988665544 34557889999999998865544444 567777777777665443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=232.34 Aligned_cols=209 Identities=21% Similarity=0.239 Sum_probs=188.8
Q ss_pred ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEc
Q 040849 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449 (809)
Q Consensus 370 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 449 (809)
++|++|++++|++++..+..+.++++|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45999999999999888888999999999999999999888889999999999999999999888899999999999999
Q ss_pred ccccCcccCCccccCCCCCcEEeCcCCcCccc-cCcchhcccCCceEEEccCCcCcccCCCCccCCCCCC----EEEccc
Q 040849 450 DKNMLEGSIPSSLGKCQNLILLGLSNNNLTGT-IPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLG----VLDVSE 524 (809)
Q Consensus 450 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~ 524 (809)
++|.+.+..+..+..+++|++|++++|++++. +|..+..+++| +.|++++|++++..+..+..+++|+ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 99999988887899999999999999999863 68999999999 7999999999988888888777777 899999
Q ss_pred cccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccc
Q 040849 525 NKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP 580 (809)
Q Consensus 525 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 580 (809)
|++++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++++..|
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9999776666654 589999999999998888888999999999999999997654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=226.93 Aligned_cols=205 Identities=23% Similarity=0.255 Sum_probs=145.1
Q ss_pred CCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcC
Q 040849 396 LERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSN 475 (809)
Q Consensus 396 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 475 (809)
.+.++++++.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.++...+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555555 2343332 4556666666666555555566666666666666666655455556666666666666
Q ss_pred CcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCcccccc
Q 040849 476 NNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555 (809)
Q Consensus 476 N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 555 (809)
|++++..+..+.++++| ++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 66665444555666666 56777777777666777788888888888888888766677888888888888888888877
Q ss_pred chhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCC
Q 040849 556 PSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 556 p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7778888888999999998888777778888889999999888876544
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-28 Score=281.12 Aligned_cols=378 Identities=13% Similarity=0.079 Sum_probs=232.0
Q ss_pred CCCCCEEEcccCcccccCccccc-CCCCccEEEeecC-cCCCC-cchhccCCCCCceeccCCcccccccChhh---hcCC
Q 040849 194 LSSLEVLSASANQFVGQIPKTLS-QLKRMRFIGFGVN-KLSGE-IPFSIYNLSSLNYFEFPVNQLQGSLPSDL---GFTL 267 (809)
Q Consensus 194 l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~---~~~l 267 (809)
+++|++|++++|.+++..+..+. .+++|+.|++++| .++.. ++..+.++++|++|++++|.+++..+..+ ...+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 33444444444444433333332 3444444444444 22211 12222234444444444444333222211 1245
Q ss_pred CCCcEEEccCcc--cccc-CCcccccCCCCceEecCCC-cceeeCCC-CCCCCCCcEEEeccccCCCCCCCchhhhhccc
Q 040849 268 PNLERLNLGENQ--FTGP-IPASISNASHLMRLTIPIN-GFSGKVPS-FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLV 342 (809)
Q Consensus 268 ~~L~~L~Ls~N~--l~~~-~p~~l~~l~~L~~L~l~~n-~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 342 (809)
++|++|++++|. ++.. ++..+..+++|+.|++++| .+.+ ++. +..+++|+.|+++.+...
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~-------------- 248 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAE-------------- 248 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCC--------------
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCc--------------
Confidence 677777777765 2111 1112234566777777666 2222 222 444455555554332210
Q ss_pred ccCCccEEeccccccccccchhhhhccccCcEE-EccCCcccccCCccccCCCCCCeeeCCCccceecCC-ccccCCCCC
Q 040849 343 NASRLELLGININNFGGMLPEAVGNLSTRLRIL-RVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIP-GSIGDLHKL 420 (809)
Q Consensus 343 ~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L 420 (809)
+..+.+.+ ++..+..+. +|+.| .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|
T Consensus 249 ---------~~~~~~~~-l~~~l~~~~-~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 249 ---------VRPDVYSG-LSVALSGCK-ELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316 (594)
T ss_dssp ---------CCHHHHHH-HHHHHHTCT-TCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTC
T ss_pred ---------cchhhHHH-HHHHHhcCC-CcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCc
Confidence 22233333 333555554 48888 4444332 3456666688999999999999875433 235689999
Q ss_pred CEEEeeCCeeecc-cCcCCcCCCCccEEEcc---------cccCcccCCcccc-CCCCCcEEeCcCCcCccccCcchh-c
Q 040849 421 QRLGLQGNKFLGE-IPSSIGNLTLLITLSFD---------KNMLEGSIPSSLG-KCQNLILLGLSNNNLTGTIPTEVI-G 488 (809)
Q Consensus 421 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~---------~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~-~ 488 (809)
++|++++| +... ++.....+++|++|++. .+.+++.....+. .+++|+.|+++.|++++..+..+. .
T Consensus 317 ~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 317 QRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp CEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred CEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 99999999 4432 22233458899999994 3556544333333 489999999999999876666665 4
Q ss_pred ccCCceEEEcc--C----CcCccc-----CCCCccCCCCCCEEEccccccccccCccccC-CCCCCEEeCcCCccccccc
Q 040849 489 LSSLSIYLDLS--Q----NQLNGT-----LPSNFGILKNLGVLDVSENKLSGEIPNSLGS-CVRLEQLGMNGNFFQGNIP 556 (809)
Q Consensus 489 l~~l~~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p 556 (809)
+++| +.|+++ + |.++.. ++..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+
T Consensus 396 ~~~L-~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 396 RPNM-TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp CTTC-CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred CCCc-ceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 7888 799999 4 566532 122256789999999988 777777777766 8999999999999988766
Q ss_pred hhh-cCCCCCCEEeCCCCCccccccc-ccccCCCCCeEEccCCcccc
Q 040849 557 SSF-SSLRGIENLDLSRNNLSGRIPK-YFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 557 ~~~-~~l~~L~~LdLs~N~l~~~~p~-~~~~l~~L~~l~ls~N~l~g 601 (809)
..+ .++++|+.|+|++|++++..+. ....+++|++|++++|+++.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 666 7799999999999999765554 44568999999999999853
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=226.56 Aligned_cols=205 Identities=23% Similarity=0.219 Sum_probs=162.3
Q ss_pred ccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCc
Q 040849 390 LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLI 469 (809)
Q Consensus 390 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 469 (809)
+.++++++++++++|.++ .+|..+. ++++.|++++|++++..|..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 566777788888887777 4454443 5778888888888777777788888888888888888765443 6778888
Q ss_pred EEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCC
Q 040849 470 LLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGN 549 (809)
Q Consensus 470 ~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 549 (809)
+|++++|+++ .+|..+.+++++ +.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 8888888887 677777778888 68888888888777778888888888888888888777777888888888888888
Q ss_pred ccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccccc
Q 040849 550 FFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGE 602 (809)
Q Consensus 550 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~ 602 (809)
++++..+..|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 888777777888888888888888888 5667777778888888888887653
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=231.02 Aligned_cols=221 Identities=23% Similarity=0.236 Sum_probs=179.8
Q ss_pred CcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEccc
Q 040849 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK 451 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 451 (809)
+..+++..+.+... .....+++|+.|++++|.++. + ..+..+++|++|++++|++.+. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 34455555555433 335567788888888887763 2 3477788888888888888763 3677888888888888
Q ss_pred ccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccccccc
Q 040849 452 NMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEI 531 (809)
Q Consensus 452 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 531 (809)
|.+++..+..+.++++|++|++++|++++..+..+..+++| ++|++++|++++..+..+..+++|+.|++++|++++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 88887777778888888888888888887666667788888 78889888888877778889999999999999999888
Q ss_pred CccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCC
Q 040849 532 PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK 606 (809)
Q Consensus 532 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~ 606 (809)
+..|..+++|+.|++++|++++..|..|..+++|+.|++++|++.+.. +.|+.++++.|+++|.+|..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 888899999999999999999988888999999999999999988654 46888999999999999864
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=224.60 Aligned_cols=205 Identities=24% Similarity=0.259 Sum_probs=181.1
Q ss_pred cCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcc
Q 040849 371 RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450 (809)
Q Consensus 371 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 450 (809)
+|+.|++++|.+.. ...+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 48888888888874 23588899999999999999863 478899999999999999998888888999999999999
Q ss_pred cccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccc
Q 040849 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530 (809)
Q Consensus 451 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 530 (809)
+|++++..+..|..+++|++|++++|++++..+..+..+++| +.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 999998888889999999999999999997777777888999 7999999999988888889999999999999999998
Q ss_pred cCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCC
Q 040849 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFL 587 (809)
Q Consensus 531 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~ 587 (809)
.|..+..+++|+.|++++|++.+.. ++|+.|+++.|+++|.+|..++.+.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCcccccC
Confidence 8888999999999999999998654 4688999999999999999887654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-24 Score=220.54 Aligned_cols=192 Identities=20% Similarity=0.198 Sum_probs=156.0
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCC
Q 040849 61 HFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIP 140 (809)
Q Consensus 61 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 140 (809)
+||.|.|++|.. ..+.++++++.++ .+|..+. +.++.|+|++|.+++..+..|+++++|++|+|++|.+++..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 689999999953 2335788888887 4566554 588999999999988888888999999999999999988888
Q ss_pred ccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCC
Q 040849 141 DNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKR 220 (809)
Q Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 220 (809)
..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88888999999999999988777778888889999999999888777777888888888888888888777777888888
Q ss_pred ccEEEeecCcCCCCcchhccCCCCCceeccCCcccccc
Q 040849 221 MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGS 258 (809)
Q Consensus 221 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 258 (809)
|++|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 88888888888877766677777777777777766543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-24 Score=230.32 Aligned_cols=201 Identities=20% Similarity=0.182 Sum_probs=109.1
Q ss_pred CcEEEccCCcccccCCccc--cCCCCCCeeeCCCccceecCC----ccccCCCCCCEEEeeCCeeecccCcCCcCCCCcc
Q 040849 372 LRILRVGNNQLFGNIPSGL--RNLVNLERLLLEGNQFTGRIP----GSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 445 (809)
|++|++++|++.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++.+..|..|..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 6666666666665555555 556666666666666554333 2233455555555555555555555555555555
Q ss_pred EEEcccccCccc---C-CccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCC-CccCCCCCCEE
Q 040849 446 TLSFDKNMLEGS---I-PSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPS-NFGILKNLGVL 520 (809)
Q Consensus 446 ~L~L~~N~l~~~---~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~-~~~~l~~L~~L 520 (809)
+|++++|++.+. . +..+..+++|++|+|++|+++ .++.. +. .+..+++|++|
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~----------------------~~~l~~~l~~L~~L 229 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGV----------------------CAALAAAGVQPHSL 229 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHH----------------------HHHHHHHTCCCSSE
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHH----------------------HHHHHhcCCCCCEE
Confidence 555555554431 1 122244555555555555554 11111 00 12344555666
Q ss_pred EccccccccccCccccCC---CCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCC
Q 040849 521 DVSENKLSGEIPNSLGSC---VRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597 (809)
Q Consensus 521 ~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N 597 (809)
||++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|+.|++++|
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence 666666655555555554 46666666666666 4455443 5666666666666653 22 455666777777777
Q ss_pred ccc
Q 040849 598 HFE 600 (809)
Q Consensus 598 ~l~ 600 (809)
+++
T Consensus 305 ~l~ 307 (310)
T 4glp_A 305 PFL 307 (310)
T ss_dssp TTS
T ss_pred CCC
Confidence 665
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=213.72 Aligned_cols=196 Identities=18% Similarity=0.185 Sum_probs=123.3
Q ss_pred CCCeeeCCCccceecCCccccCCCCCCEEEeeCCe-eecccCcCCcCCCCccEEEccc-ccCcccCCccccCCCCCcEEe
Q 040849 395 NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK-FLGEIPSSIGNLTLLITLSFDK-NMLEGSIPSSLGKCQNLILLG 472 (809)
Q Consensus 395 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~ 472 (809)
+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555555555555555666666666664 5544444555566666666665 566555555556666666666
Q ss_pred CcCCcCccccCcchhcccCCce---EEEccCC-cCcccCCCCccCCCCCC-EEEccccccccccCccccCCCCCCEEeCc
Q 040849 473 LSNNNLTGTIPTEVIGLSSLSI---YLDLSQN-QLNGTLPSNFGILKNLG-VLDVSENKLSGEIPNSLGSCVRLEQLGMN 547 (809)
Q Consensus 473 Ls~N~l~~~~p~~~~~l~~l~~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 547 (809)
+++|++++ +|. +..++++ + .|++++| ++++..+..|..+++|+ .|++++|+++...+..|.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYST-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBC-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-ccccccc-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 66666653 444 4455555 3 6677777 66666666677777777 7777777777333333444 677778888
Q ss_pred CCc-cccccchhhcCC-CCCCEEeCCCCCcccccccccccCCCCCeEEccCC
Q 040849 548 GNF-FQGNIPSSFSSL-RGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597 (809)
Q Consensus 548 ~N~-l~~~~p~~~~~l-~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N 597 (809)
+|+ +++..+..|.++ ++|+.||+++|++++..+. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 774 776667777777 7788888888887754433 4567777777765
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=216.03 Aligned_cols=205 Identities=25% Similarity=0.247 Sum_probs=181.4
Q ss_pred cccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCC
Q 040849 413 SIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSL 492 (809)
Q Consensus 413 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 492 (809)
.+.++++++.+++++|.++. +|..+. +.++.|++++|.+++..|..|..+++|++|++++|++++..+ . ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcC
Confidence 36778999999999999984 555553 689999999999999989999999999999999999996433 3 678888
Q ss_pred ceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCC
Q 040849 493 SIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSR 572 (809)
Q Consensus 493 ~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 572 (809)
+.|++++|+++ .+|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 80 -~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 -GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp -CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred -CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 89999999998 6788899999999999999999988889999999999999999999998888899999999999999
Q ss_pred CCcccccccccccCCCCCeEEccCCcccccCCCC-CCCCCCCcccccCCCCCCC
Q 040849 573 NNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIK-GVFSNSSAVSLDGNDNLCG 625 (809)
Q Consensus 573 N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~ 625 (809)
|++++..+..|..+++|++|++++|+++ .+|.. .....+..+.+.+||+.|.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 9999888888999999999999999999 45543 3344577788899999885
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-25 Score=241.65 Aligned_cols=231 Identities=21% Similarity=0.262 Sum_probs=176.4
Q ss_pred CcEEEccCCcccccCC----ccccCCCCCCeeeCCCc---cceecCCccc-------cCCCCCCEEEeeCCeeec----c
Q 040849 372 LRILRVGNNQLFGNIP----SGLRNLVNLERLLLEGN---QFTGRIPGSI-------GDLHKLQRLGLQGNKFLG----E 433 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~----~ 433 (809)
|+.|++++|++.+..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|++.+ .
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 113 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHH
T ss_pred ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHH
Confidence 6666666666665432 33556777777777774 4444555443 677888888888888776 4
Q ss_pred cCcCCcCCCCccEEEcccccCcccCCcccc----CC---------CCCcEEeCcCCcCc-cccC---cchhcccCCceEE
Q 040849 434 IPSSIGNLTLLITLSFDKNMLEGSIPSSLG----KC---------QNLILLGLSNNNLT-GTIP---TEVIGLSSLSIYL 496 (809)
Q Consensus 434 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~----~l---------~~L~~L~Ls~N~l~-~~~p---~~~~~l~~l~~~L 496 (809)
+|..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+++ +.+| ..+..+++| +.|
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L 192 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL-HTV 192 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC-CEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc-CEE
Confidence 666777788888888888888654443333 33 78999999999987 4445 456677788 789
Q ss_pred EccCCcCc--c---cCCCCccCCCCCCEEEccccccc----cccCccccCCCCCCEEeCcCCccccc----cchhhcC--
Q 040849 497 DLSQNQLN--G---TLPSNFGILKNLGVLDVSENKLS----GEIPNSLGSCVRLEQLGMNGNFFQGN----IPSSFSS-- 561 (809)
Q Consensus 497 ~Ls~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~-- 561 (809)
++++|+++ | ..|..+..+++|+.|+|++|+++ +.+|..+..+++|+.|+|++|.+++. +|..+..
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 99999887 3 35557888999999999999996 67888899999999999999999876 6777744
Q ss_pred CCCCCEEeCCCCCccc----cccccc-ccCCCCCeEEccCCcccccC
Q 040849 562 LRGIENLDLSRNNLSG----RIPKYF-ENFLFLQNLNLSFNHFEGEV 603 (809)
Q Consensus 562 l~~L~~LdLs~N~l~~----~~p~~~-~~l~~L~~l~ls~N~l~g~~ 603 (809)
+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8999999999999998 578777 67899999999999988644
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-25 Score=241.24 Aligned_cols=252 Identities=15% Similarity=0.145 Sum_probs=176.5
Q ss_pred EeccccccccccchhhhhccccCcEEEccCCcccccCC----ccccCCC-CCCeeeCCCccceecCCccccCC-----CC
Q 040849 350 LGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIP----SGLRNLV-NLERLLLEGNQFTGRIPGSIGDL-----HK 419 (809)
Q Consensus 350 L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 419 (809)
..++.|.+++.+|..+.. +.+|++|++++|.+.+..+ ..+..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 455666666666655443 3448888888888876666 6677777 78888888888877666666554 78
Q ss_pred CCEEEeeCCeeecccCcCC----cCC-CCccEEEcccccCcccCCcccc----C-CCCCcEEeCcCCcCcccc----Ccc
Q 040849 420 LQRLGLQGNKFLGEIPSSI----GNL-TLLITLSFDKNMLEGSIPSSLG----K-CQNLILLGLSNNNLTGTI----PTE 485 (809)
Q Consensus 420 L~~L~Ls~N~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~~p~~l~----~-l~~L~~L~Ls~N~l~~~~----p~~ 485 (809)
|++|+|++|++++..+..+ ..+ ++|++|++++|.+++..+..+. . .++|++|+|++|++++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888876655543 333 7888888888888766554433 3 358888888888887533 333
Q ss_pred hhccc-CCceEEEccCCcCcccCCCCcc----CC-CCCCEEEccccccccc----cCccccC-CCCCCEEeCcCCccccc
Q 040849 486 VIGLS-SLSIYLDLSQNQLNGTLPSNFG----IL-KNLGVLDVSENKLSGE----IPNSLGS-CVRLEQLGMNGNFFQGN 554 (809)
Q Consensus 486 ~~~l~-~l~~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~ 554 (809)
+...+ ++ +.|+|++|++++..+..+. .. ++|++|||++|++++. ++..+.. .++|++|+|++|.+++.
T Consensus 162 l~~~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 162 LAAIPANV-NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHTSCTTC-CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HhcCCccc-cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 44444 66 7888888888766554333 34 5888888888888863 4555555 35888889988888876
Q ss_pred cc----hhhcCCCCCCEEeCCCCCccccc-------ccccccCCCCCeEEccCCcccccC
Q 040849 555 IP----SSFSSLRGIENLDLSRNNLSGRI-------PKYFENFLFLQNLNLSFNHFEGEV 603 (809)
Q Consensus 555 ~p----~~~~~l~~L~~LdLs~N~l~~~~-------p~~~~~l~~L~~l~ls~N~l~g~~ 603 (809)
.+ ..+..+++|+.|+|++|++++.. +..+.++++|+.||+++|++.+..
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 55 33466788889999888855433 345677788888999998887653
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=221.97 Aligned_cols=232 Identities=19% Similarity=0.170 Sum_probs=162.4
Q ss_pred CCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccccccccchhh--hhccccCcEEEccCCcccccCC----
Q 040849 314 LHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAV--GNLSTRLRILRVGNNQLFGNIP---- 387 (809)
Q Consensus 314 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~--~~~~~~L~~L~Ls~n~l~~~~p---- 387 (809)
...++.+.+..+.++.. .+........+++|+.|++++|.+.+..|..+ ..+ ++|++|++++|++.+..+
T Consensus 63 ~~~l~~l~l~~~~~~~~---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQ---LLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp SCCCCEEEECSCCCBHH---HHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHH
T ss_pred hcceeEEEEeCCcCCHH---HHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHH
Confidence 34567788877766421 11112223345779999999999999999887 555 459999999999997655
Q ss_pred ccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecc---c-CcCCcCCCCccEEEcccccCcccCC--c-
Q 040849 388 SGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGE---I-PSSIGNLTLLITLSFDKNMLEGSIP--S- 460 (809)
Q Consensus 388 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~-p~~~~~l~~L~~L~L~~N~l~~~~p--~- 460 (809)
..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++.+. . +..+..+++|++|++++|+++...+ .
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 218 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA 218 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence 4456899999999999999988889999999999999999998753 2 2334789999999999999973211 1
Q ss_pred cccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCC
Q 040849 461 SLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 540 (809)
Q Consensus 461 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 540 (809)
.+..+++|++|||++|++++..|..+..+. .+++|++|+|++|+++ .+|..+. ++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~----------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~ 273 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCM----------------------WSSALNSLNLSFAGLE-QVPKGLP--AK 273 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCC----------------------CCTTCCCEECCSSCCC-SCCSCCC--SC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhcc----------------------CcCcCCEEECCCCCCC-chhhhhc--CC
Confidence 246778888888888888766565554431 1145555555555555 4444442 45
Q ss_pred CCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcc
Q 040849 541 LEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS 576 (809)
Q Consensus 541 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 576 (809)
|++|+|++|++++. |. +..+++|+.|+|++|+++
T Consensus 274 L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 274 LRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 66666666666643 22 455566666666666665
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=209.85 Aligned_cols=198 Identities=18% Similarity=0.186 Sum_probs=174.3
Q ss_pred cccCcEEEccCCcccccCCccccCCCCCCeeeCCCcc-ceecCCccccCCCCCCEEEeeC-CeeecccCcCCcCCCCccE
Q 040849 369 STRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQ-FTGRIPGSIGDLHKLQRLGLQG-NKFLGEIPSSIGNLTLLIT 446 (809)
Q Consensus 369 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~ 446 (809)
+.++++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3469999999999998888899999999999999997 8877778999999999999999 9999888889999999999
Q ss_pred EEcccccCcccCCccccCCCCCc---EEeCcCC-cCccccCcchhcccCCce-EEEccCCcCcccCCCCccCCCCCCEEE
Q 040849 447 LSFDKNMLEGSIPSSLGKCQNLI---LLGLSNN-NLTGTIPTEVIGLSSLSI-YLDLSQNQLNGTLPSNFGILKNLGVLD 521 (809)
Q Consensus 447 L~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~l~~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 521 (809)
|++++|++++ +|. +..+++|+ +|++++| ++++..+..+.+++++ + .|++++|+++...+..|.. ++|+.|+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-EEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-eeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 9999999986 665 88888998 9999999 9987666778899999 7 9999999999555555555 8999999
Q ss_pred ccccc-cccccCccccCC-CCCCEEeCcCCccccccchhhcCCCCCCEEeCCCC
Q 040849 522 VSENK-LSGEIPNSLGSC-VRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573 (809)
Q Consensus 522 Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 573 (809)
|++|+ +++..+..|.++ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 99995 998878889999 9999999999999965444 6788999999886
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-24 Score=233.04 Aligned_cols=212 Identities=16% Similarity=0.196 Sum_probs=119.0
Q ss_pred CCCCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCcccccc--ccCCccccCCCcCcc
Q 040849 60 RHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYL--FRLQFLWLDNNTFGG 137 (809)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~ 137 (809)
.-|.+|.++.|++. .++.+++ ++|.+. |..+..+ +++++|++++|.+.+
T Consensus 34 ~vc~~W~~~~~~~~--~~~~l~l------------------------~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~ 84 (336)
T 2ast_B 34 GVCKRWYRLASDES--LWQTLDL------------------------TGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQ 84 (336)
T ss_dssp SSCHHHHHHHTCST--TSSEEEC------------------------TTCBCC---HHHHHHHHHTTCSEEECTTCEECS
T ss_pred HHHHHHHHHhcCch--hheeecc------------------------ccccCC---HHHHHhhhhccceEEEcCCccccc
Confidence 35678999998642 2344444 444443 2334444 555555555555554
Q ss_pred cCCccccCCCcCcEEEcccCCCCCC-CcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccC-cccc-cCccc
Q 040849 138 QIPDNISHCVNLESLRLGFNELVGK-VPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASAN-QFVG-QIPKT 214 (809)
Q Consensus 138 ~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~ 214 (809)
..+. +..+++|++|++++|.+++. +|..+..+++|++|+|++|.+++..+..++.+++|++|++++| .+++ .++..
T Consensus 85 ~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 85 PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence 4433 33455555666655555443 4455555566666666666655555555555666666666666 4543 24444
Q ss_pred ccCCCCccEEEeecC-cCCCC-cchhccCCC-CCceeccCCc--ccc-cccChhhhcCCCCCcEEEccCcc-ccccCCcc
Q 040849 215 LSQLKRMRFIGFGVN-KLSGE-IPFSIYNLS-SLNYFEFPVN--QLQ-GSLPSDLGFTLPNLERLNLGENQ-FTGPIPAS 287 (809)
Q Consensus 215 l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~p~~~~~~l~~L~~L~Ls~N~-l~~~~p~~ 287 (809)
+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+. .+++|+.|++++|. +++..+..
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHH
Confidence 555666666666666 55543 344455555 6666666665 333 33444433 46677777777776 55555556
Q ss_pred cccCCCCceEecCCC
Q 040849 288 ISNASHLMRLTIPIN 302 (809)
Q Consensus 288 l~~l~~L~~L~l~~n 302 (809)
+..+++|+.|++++|
T Consensus 243 l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 243 FFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGCTTCCEEECTTC
T ss_pred HhCCCCCCEeeCCCC
Confidence 666666666666665
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=208.21 Aligned_cols=180 Identities=24% Similarity=0.301 Sum_probs=108.7
Q ss_pred CCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCc
Q 040849 395 NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLS 474 (809)
Q Consensus 395 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 474 (809)
+.++++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4456666666666 3444333 456666666666665555555666666666666666655555555555555555555
Q ss_pred CCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccc
Q 040849 475 NNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554 (809)
Q Consensus 475 ~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 554 (809)
+|+++ +..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++.
T Consensus 92 ~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccc-------------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 55554 44444455556666666666666655555556666666666666666655
Q ss_pred cchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccccc
Q 040849 555 IPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGE 602 (809)
Q Consensus 555 ~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~ 602 (809)
.+..|..+++|+.|||++|++++..+..|..+++|++|++++|++++.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 555666666666666666666666666666666666666666666654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-24 Score=228.39 Aligned_cols=250 Identities=18% Similarity=0.233 Sum_probs=194.6
Q ss_pred ccEEeccccccccccchhhhhc-cccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceec-CCccccCCCCCCEEE
Q 040849 347 LELLGININNFGGMLPEAVGNL-STRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGR-IPGSIGDLHKLQRLG 424 (809)
Q Consensus 347 L~~L~l~~n~~~~~~p~~~~~~-~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ 424 (809)
++.++++.+.+. |..+..+ ...++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666665554 2333333 24588999999998877665 55789999999999998865 777888899999999
Q ss_pred eeCCeeecccCcCCcCCCCccEEEcccc-cCccc-CCccccCCCCCcEEeCcCC-cCccc-cCcchhccc-CCceEEEcc
Q 040849 425 LQGNKFLGEIPSSIGNLTLLITLSFDKN-MLEGS-IPSSLGKCQNLILLGLSNN-NLTGT-IPTEVIGLS-SLSIYLDLS 499 (809)
Q Consensus 425 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~l~~~L~Ls 499 (809)
+++|++++..|..++.+++|++|++++| .+++. ++..+.++++|++|++++| ++++. ++..+..++ +| ++|+++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEECC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEeC
Confidence 9999988888888888999999999999 67753 5666888899999999999 88864 677788888 88 789999
Q ss_pred CC--cCc-ccCCCCccCCCCCCEEEccccc-cccccCccccCCCCCCEEeCcCCc-cccccchhhcCCCCCCEEeCCCCC
Q 040849 500 QN--QLN-GTLPSNFGILKNLGVLDVSENK-LSGEIPNSLGSCVRLEQLGMNGNF-FQGNIPSSFSSLRGIENLDLSRNN 574 (809)
Q Consensus 500 ~N--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~ 574 (809)
+| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 455 4566677788999999999998 777888889999999999999995 33332336888999999999998
Q ss_pred cccccccccccC-CCCCeEEccCCcccccCCC
Q 040849 575 LSGRIPKYFENF-LFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 575 l~~~~p~~~~~l-~~L~~l~ls~N~l~g~~p~ 605 (809)
++. ..+..+ ..+..|++++|++++..|.
T Consensus 283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 332 234444 2377778999999988774
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=214.25 Aligned_cols=194 Identities=26% Similarity=0.349 Sum_probs=138.6
Q ss_pred cCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcE
Q 040849 391 RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLIL 470 (809)
Q Consensus 391 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 470 (809)
..+++|++|++++|.++. +| .+..+++|++|++++|++.+..+ +..+++|++|++++|++++. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345566666666666653 33 45666666666666666665443 66666666677766666643 25666777777
Q ss_pred EeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCc
Q 040849 471 LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNF 550 (809)
Q Consensus 471 L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 550 (809)
|++++|++++ ++. +..+++| +.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|+
T Consensus 112 L~l~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQITD-VTP-LAGLSNL-QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSCCCC-CGG-GTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCC-chh-hcCCCCC-CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 7777777764 332 6666777 677777777775443 7778888888888888885444 8888888888888888
Q ss_pred cccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccc
Q 040849 551 FQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 551 l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
+++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 886554 7888899999999999887664 7888899999999998875
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-24 Score=233.07 Aligned_cols=269 Identities=19% Similarity=0.175 Sum_probs=158.1
Q ss_pred EECCCCCCccccCccccCCCCccEEeCCCCCCCccCC----ccccccc-cCCccccCCCcCcccCCccccCC-----CcC
Q 040849 80 LLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIP----QEIGYLF-RLQFLWLDNNTFGGQIPDNISHC-----VNL 149 (809)
Q Consensus 80 l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L 149 (809)
.+++.+.++|.+|..+...++|++|||++|.+++..+ ..|..++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566777777777666666667777777777776655 5566666 77777777777776666666554 777
Q ss_pred cEEEcccCCCCCCCccccc----CC-CCCCEEEcccccCcccCCccC----CC-CCCCCEEEcccCcccccCc----ccc
Q 040849 150 ESLRLGFNELVGKVPRKLG----SL-SKLRTLAVHYNNLSGQIPSSF----GN-LSSLEVLSASANQFVGQIP----KTL 215 (809)
Q Consensus 150 ~~L~Ls~N~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~Ls~N~l~~~~p----~~l 215 (809)
++|+|++|.+++..+..+. .+ ++|++|+|++|++++..+..+ .. .++|++|++++|++++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 7777777777666555433 33 677777777777765554443 23 2467777777777764332 333
Q ss_pred cCCC-CccEEEeecCcCCCCcchhccC----C-CCCceeccCCcccccc----cChhhhcCCCCCcEEEccCccccccCC
Q 040849 216 SQLK-RMRFIGFGVNKLSGEIPFSIYN----L-SSLNYFEFPVNQLQGS----LPSDLGFTLPNLERLNLGENQFTGPIP 285 (809)
Q Consensus 216 ~~l~-~L~~L~L~~n~l~~~~~~~l~~----l-~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~Ls~N~l~~~~p 285 (809)
..++ +|++|++++|++++..+..+.. + ++|++|++++|.+++. ++..+....++|++|+|++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 6666666666666555443332 2 3555555555555431 222222112345555555554443222
Q ss_pred cccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchh-hhhcccccCCccEEeccccccccccchh
Q 040849 286 ASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLE-FVNSLVNASRLELLGININNFGGMLPEA 364 (809)
Q Consensus 286 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 364 (809)
..+. ..+..+++|+.|++++|.+......... ....+..+++|+.+++++|.+.+..+..
T Consensus 243 ~~l~-------------------~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 243 ENLK-------------------LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHH-------------------HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHH-------------------HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 1111 0145566777777777776554433222 2234567778888888888887776655
Q ss_pred hhh
Q 040849 365 VGN 367 (809)
Q Consensus 365 ~~~ 367 (809)
+..
T Consensus 304 ~~~ 306 (362)
T 3goz_A 304 ISN 306 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-24 Score=233.70 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=176.4
Q ss_pred ccccCCccEEeccccccccccchh----hhhccccCcEEEccCC---cccccCCccc-------cCCCCCCeeeCCCccc
Q 040849 341 LVNASRLELLGININNFGGMLPEA----VGNLSTRLRILRVGNN---QLFGNIPSGL-------RNLVNLERLLLEGNQF 406 (809)
Q Consensus 341 l~~~~~L~~L~l~~n~~~~~~p~~----~~~~~~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~N~l 406 (809)
+..+++|+.|++++|.+.+..+.. +..+ ++|++|++++| ++.+.+|..+ ..+++|++|+|++|.+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 344455555556555555543333 2233 34667776664 3444445444 6788888888888888
Q ss_pred ee----cCCccccCCCCCCEEEeeCCeeecccCcCCcC----C---------CCccEEEcccccCc-ccCC---ccccCC
Q 040849 407 TG----RIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGN----L---------TLLITLSFDKNMLE-GSIP---SSLGKC 465 (809)
Q Consensus 407 ~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~----l---------~~L~~L~L~~N~l~-~~~p---~~l~~l 465 (809)
++ .+|..+..+++|++|+|++|.+++..+..+.. + ++|++|++++|+++ +.+| ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 76 46667788888888888888886544433333 3 78889999999887 3344 466778
Q ss_pred CCCcEEeCcCCcCcc-----ccCcchhcccCCceEEEccCCcCc----ccCCCCccCCCCCCEEEccccccccc----cC
Q 040849 466 QNLILLGLSNNNLTG-----TIPTEVIGLSSLSIYLDLSQNQLN----GTLPSNFGILKNLGVLDVSENKLSGE----IP 532 (809)
Q Consensus 466 ~~L~~L~Ls~N~l~~-----~~p~~~~~l~~l~~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p 532 (809)
++|+.|++++|+++. ..|..+..+++| +.|+|++|+++ +.+|..+..+++|+.|+|++|++++. +|
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 899999999998872 344477788888 78999999986 56777888999999999999999876 56
Q ss_pred cccc--CCCCCCEEeCcCCcccc----ccchhh-cCCCCCCEEeCCCCCcccccc
Q 040849 533 NSLG--SCVRLEQLGMNGNFFQG----NIPSSF-SSLRGIENLDLSRNNLSGRIP 580 (809)
Q Consensus 533 ~~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~LdLs~N~l~~~~p 580 (809)
..+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6663 49999999999999998 588887 678999999999999998775
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-23 Score=231.67 Aligned_cols=209 Identities=22% Similarity=0.344 Sum_probs=166.1
Q ss_pred ccCCCCCCCCCC-----ccccc-ccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccC
Q 040849 52 VLSSWNYSRHFC-----QWKGV-TCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRL 125 (809)
Q Consensus 52 ~l~~W~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L 125 (809)
.+.+|..+.++| .|.|+ .|.. .+++.|+++++.+++ +|+.+. ++|++|+|++|.|+ .+| ..+++|
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCC
Confidence 356787666788 79999 7863 579999999999988 787664 88999999999998 567 457899
Q ss_pred CccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccC
Q 040849 126 QFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASAN 205 (809)
Q Consensus 126 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 205 (809)
++|+|++|.|++ +|. +.+ +|++|+|++|.+++ +|. .+++|++|+|++|++++ +|. .+++|++|++++|
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC
Confidence 999999999997 777 665 99999999999987 565 68999999999999986 665 5789999999999
Q ss_pred cccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCC-------ceeccCCcccccccChhhhcCCCCCcEEEccCc
Q 040849 206 QFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSL-------NYFEFPVNQLQGSLPSDLGFTLPNLERLNLGEN 278 (809)
Q Consensus 206 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N 278 (809)
++++ +|. |. ++|+.|++++|+|+ .+|. +.. +| +.|++++|.++ .+|..++ .+++|+.|+|++|
T Consensus 171 ~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N 240 (571)
T 3cvr_A 171 QLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDN 240 (571)
T ss_dssp CCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSS
T ss_pred CCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCC
Confidence 9987 666 65 88999999999988 4555 544 56 77777777777 5777666 4777777777777
Q ss_pred cccccCCcccccC
Q 040849 279 QFTGPIPASISNA 291 (809)
Q Consensus 279 ~l~~~~p~~l~~l 291 (809)
++++.+|..+..+
T Consensus 241 ~l~~~~p~~l~~l 253 (571)
T 3cvr_A 241 PLSSRIRESLSQQ 253 (571)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHh
Confidence 7777777666554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-22 Score=197.01 Aligned_cols=181 Identities=22% Similarity=0.261 Sum_probs=143.5
Q ss_pred CCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCc
Q 040849 62 FCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD 141 (809)
Q Consensus 62 ~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 141 (809)
.|.|.+|.|+... ++ .+|..+ .++|++|+|++|++++..+..|+++++|++|++++|++++..+.
T Consensus 6 ~C~~~~v~c~~~~------------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYSQG------------RT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCSSC------------CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecCCC------------cc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 4899999997531 11 233333 45889999999999977777788999999999999999877777
Q ss_pred cccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCc
Q 040849 142 NISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRM 221 (809)
Q Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 221 (809)
.|.++++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 78889999999999999987777778889999999999999987777778888999999999998887777678888888
Q ss_pred cEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhh
Q 040849 222 RFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLG 264 (809)
Q Consensus 222 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 264 (809)
+.|++++|.+.+ .+++|++|+++.|+++|.+|.+++
T Consensus 151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 888888887664 344666777777777777766554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=207.15 Aligned_cols=191 Identities=27% Similarity=0.384 Sum_probs=165.1
Q ss_pred cCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcc
Q 040849 371 RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450 (809)
Q Consensus 371 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 450 (809)
+|+.|++++|.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+. ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 48999999998875 34 68889999999999999986554 89999999999999998864 368889999999999
Q ss_pred cccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccc
Q 040849 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530 (809)
Q Consensus 451 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 530 (809)
+|++++. + .+..+++|++|++++|++++..+ +..+++| +.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 116 ~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 9999864 3 38899999999999999986443 7788888 799999999997544 88999999999999999865
Q ss_pred cCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccc
Q 040849 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGR 578 (809)
Q Consensus 531 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 578 (809)
.+ +..+++|++|+|++|++++..| +..+++|+.|++++|++++.
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 54 8899999999999999997764 89999999999999999863
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=209.64 Aligned_cols=244 Identities=14% Similarity=0.095 Sum_probs=187.2
Q ss_pred CcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCC-c
Q 040849 63 CQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIP-D 141 (809)
Q Consensus 63 c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~ 141 (809)
|.|..|.|+.. +++ .+|..+ .+++++|+|++|+|+...+.+|+++++|++|+|++|.+.+.+| .
T Consensus 9 C~~~~v~C~~~------------~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQES------------KVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEEST------------TCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEecCC------------CCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 67777888632 233 355555 3689999999999997767789999999999999999877665 4
Q ss_pred cccCCCcCcE-EEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEccc-CcccccCcccccCCC
Q 040849 142 NISHCVNLES-LRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASA-NQFVGQIPKTLSQLK 219 (809)
Q Consensus 142 ~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~ 219 (809)
.|.++++|++ +.++.|+++...|..|..+++|++|++++|++++..+..+....++..|++.+ +++....+..|..+.
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 6889988775 66778999988889999999999999999999977777777888889999966 567766667777765
Q ss_pred -CccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEe
Q 040849 220 -RMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLT 298 (809)
Q Consensus 220 -~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 298 (809)
.++.|++++|+++. +|.......+|+.+++..++..+.+|...+..+++|++|++++|+++...+..+. +|+.|.
T Consensus 154 ~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~ 229 (350)
T 4ay9_X 154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLR 229 (350)
T ss_dssp SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEE
T ss_pred hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhh
Confidence 68899999999985 4445556678999998765444488887766889999999999999855444444 455555
Q ss_pred cCCCcceeeCCCCCCCCCCcEEEeccc
Q 040849 299 IPINGFSGKVPSFGNLHKLQWVSISMN 325 (809)
Q Consensus 299 l~~n~l~~~~~~~~~l~~L~~L~Ls~n 325 (809)
+.++.--..+|.+..+++|+.++++++
T Consensus 230 ~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred hccCCCcCcCCCchhCcChhhCcCCCC
Confidence 544443446667777778887777644
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-21 Score=204.89 Aligned_cols=224 Identities=18% Similarity=0.162 Sum_probs=134.1
Q ss_pred ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCC-ccccCCCCCCE-EEeeCCeeecccCcCCcCCCCccEE
Q 040849 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIP-GSIGDLHKLQR-LGLQGNKFLGEIPSSIGNLTLLITL 447 (809)
Q Consensus 370 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L 447 (809)
+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|+. +.++.|++++..|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 347777777777776555567777777777777777655444 45666666554 4555677776666677777777777
Q ss_pred EcccccCcccCCccccCCCCCcEEeCcC-CcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccc-c
Q 040849 448 SFDKNMLEGSIPSSLGKCQNLILLGLSN-NNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSE-N 525 (809)
Q Consensus 448 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N 525 (809)
++++|++.+..+..+....++..|++.+ |++....+..+.++...++.|+|++|+|+...+..| ...+|+.|++++ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence 7777777666555566666666676654 455533344455554433567777777764433333 345666777664 4
Q ss_pred ccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCc
Q 040849 526 KLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNH 598 (809)
Q Consensus 526 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~ 598 (809)
.++...+..|.++++|++|+|++|+|+...+..| .+|+.|.+.+++--..+| .+.++++|+.++++++.
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 4543333456667777777777777764444333 344444444433333444 35666667777766543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=216.97 Aligned_cols=189 Identities=27% Similarity=0.314 Sum_probs=140.1
Q ss_pred cCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcc
Q 040849 371 RLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450 (809)
Q Consensus 371 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 450 (809)
+++.|++++|++++ +|..+ .++|++|+|++|+++ .+| ..+++|++|++++|++++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 47778888888776 55544 367888888888887 455 446788888888888876 555 554 78888888
Q ss_pred cccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccc
Q 040849 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530 (809)
Q Consensus 451 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 530 (809)
+|++++ +|. .+++|+.|+|++|+|++ +|. .+++| +.|+|++|++++ +|. |. ++|+.|+|++|+|+ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 888876 554 56788888888888875 665 45666 678888888886 555 55 78888888888888 5
Q ss_pred cCccccCCCCC-------CEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCC
Q 040849 531 IPNSLGSCVRL-------EQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLF 588 (809)
Q Consensus 531 ~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 588 (809)
+|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..|..+..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 666 554 66 88888888888 56777777888888888888888888887776543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=188.80 Aligned_cols=181 Identities=20% Similarity=0.219 Sum_probs=157.8
Q ss_pred cEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccc
Q 040849 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN 181 (809)
Q Consensus 102 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 181 (809)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46788888887 455544 468999999999999877778899999999999999999877777899999999999999
Q ss_pred cCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccCh
Q 040849 182 NLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPS 261 (809)
Q Consensus 182 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 261 (809)
++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9997777778999999999999999998887788999999999999999998877778899999999999998774
Q ss_pred hhhcCCCCCcEEEccCccccccCCcccccCCC
Q 040849 262 DLGFTLPNLERLNLGENQFTGPIPASISNASH 293 (809)
Q Consensus 262 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 293 (809)
.+++|+.|+++.|+++|.+|.+++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4667889999999999999988876654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=189.96 Aligned_cols=166 Identities=23% Similarity=0.270 Sum_probs=139.1
Q ss_pred CCCCCCCCCCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCC
Q 040849 54 SSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNN 133 (809)
Q Consensus 54 ~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N 133 (809)
.-|..+.+.|+|.+|.|+.. ++ +.+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~--~l-----------~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK--RH-----------ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS--CC-----------SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccCC--Cc-----------CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 34556778999999999743 11 13444443 78999999999999988999999999999999999
Q ss_pred cCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcc
Q 040849 134 TFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPK 213 (809)
Q Consensus 134 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 213 (809)
+++...+..|.++++|++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 998776677899999999999999999877777889999999999999998 7788888999999999999999877777
Q ss_pred cccCCCCccEEEeecCcCCCCc
Q 040849 214 TLSQLKRMRFIGFGVNKLSGEI 235 (809)
Q Consensus 214 ~l~~l~~L~~L~L~~n~l~~~~ 235 (809)
.|..+++|+.|++++|.+....
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTB
T ss_pred HHhCCCCCCEEEeeCCCccCCc
Confidence 7888888999988888877554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-20 Score=188.90 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=119.6
Q ss_pred EEEcccccCcccCCccccCCCCCcEEeCcCCcCccccC-cchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccc
Q 040849 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIP-TEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSE 524 (809)
Q Consensus 446 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 524 (809)
.+++++|.++. +|..+. +.+++|+|++|++++..| ..+..+++| +.|+|++|++++..+..|..+++|++|+|++
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 55555555542 344332 245666666666665433 335666666 6777777777777777788888888888888
Q ss_pred cccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCC
Q 040849 525 NKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 525 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
|++++..|..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|++|++++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88888777788888889999999999988888888888999999999999998888888889999999999999888766
Q ss_pred C
Q 040849 605 I 605 (809)
Q Consensus 605 ~ 605 (809)
.
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=185.83 Aligned_cols=155 Identities=23% Similarity=0.267 Sum_probs=102.4
Q ss_pred EEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccc
Q 040849 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSEN 525 (809)
Q Consensus 446 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 525 (809)
.+++++|.++ .+|..+. ++|+.|++++|++++..+..+..+++| +.|+|++|++++..|..|..+++|++|+|++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-CEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-CEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3444444444 2333322 355555555555554444455555555 45666666666666666777777777777777
Q ss_pred ccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCC
Q 040849 526 KLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 526 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
+|+...+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 7775555566777777777777777777777777777778888888888877777777777888888888887776443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-21 Score=228.60 Aligned_cols=230 Identities=19% Similarity=0.139 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCccccCCCCCC-CCCCcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCC
Q 040849 30 SNETDQLALLEFKAKVTHDPLEVLSSWNYS-RHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKN 108 (809)
Q Consensus 30 ~~~~~~~~ll~~k~~~~~~~~~~l~~W~~~-~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~ 108 (809)
....++++|+++..+.....+..-..|... ...+.|.++.++. .+++.++|..+.+... +..+ |+.++|+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~ 200 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQAL-----LQHKKLSQ 200 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhH-----hhcCccCc
Confidence 346788999999988753333334456433 3568899998874 6899999998888763 3333 33444444
Q ss_pred CCCCc---------cCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 040849 109 NSFRN---------EIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVH 179 (809)
Q Consensus 109 n~l~~---------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 179 (809)
|.|.+ ..|..|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+.+++|++|+|+
T Consensus 201 ~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 201 YSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred ccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence 44432 45777888999999999999988 77777778999999999999988 788888999999999999
Q ss_pred cccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCC-CceeccCCcccccc
Q 040849 180 YNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSS-LNYFEFPVNQLQGS 258 (809)
Q Consensus 180 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~ 258 (809)
+|+|+ .+|..|+++++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+..+.. +..+++++|.++|.
T Consensus 279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp TSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 99998 77888999999999999999887 66777899999999999999999888887766533 23467888888876
Q ss_pred cChhhhcCCCCCcEEEccCc
Q 040849 259 LPSDLGFTLPNLERLNLGEN 278 (809)
Q Consensus 259 ~p~~~~~~l~~L~~L~Ls~N 278 (809)
+|. .|+.|+++.|
T Consensus 357 ~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 357 LPH-------ERRFIEINTD 369 (727)
T ss_dssp CCC-------C---------
T ss_pred Ccc-------ccceeEeecc
Confidence 664 3456666666
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-20 Score=197.22 Aligned_cols=178 Identities=23% Similarity=0.158 Sum_probs=109.1
Q ss_pred CeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCc-CCCCccEEEcccccCcccCCccccCCCCCcEEeCcC
Q 040849 397 ERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIG-NLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSN 475 (809)
Q Consensus 397 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 475 (809)
+.+++++|.++ .+|..+. +.++.|+|++|++++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46677777776 3444332 3466666666666666555555 566666666666666655555566666565555555
Q ss_pred CcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCcccccc
Q 040849 476 NNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555 (809)
Q Consensus 476 N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 555 (809)
|+|+ +..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..
T Consensus 98 N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLH-------------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCC-------------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 5555 344445555666666666666666666666666666666666666666544
Q ss_pred chhh---cCCCCCCEEeCCCCCcccccccccccCCC--CCeEEccCCccccc
Q 040849 556 PSSF---SSLRGIENLDLSRNNLSGRIPKYFENFLF--LQNLNLSFNHFEGE 602 (809)
Q Consensus 556 p~~~---~~l~~L~~LdLs~N~l~~~~p~~~~~l~~--L~~l~ls~N~l~g~ 602 (809)
+..| ..+++|+.|||++|+|++..+..|..++. |+.|++++|++.+.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 4444 45667777777777777666566666665 36677777777653
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=177.98 Aligned_cols=135 Identities=20% Similarity=0.215 Sum_probs=85.8
Q ss_pred cEEEcccccCcccCC-ccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcc
Q 040849 445 ITLSFDKNMLEGSIP-SSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVS 523 (809)
Q Consensus 445 ~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 523 (809)
++|++++|++++..| ..|..+++|++|+|++|++++..+..+.++++| ++|+|++|++++..+..|..+++|++|+|+
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-NEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-CEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 344444444443322 234444455555555555544444445555555 455555555555555566677777777777
Q ss_pred ccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccc
Q 040849 524 ENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP 580 (809)
Q Consensus 524 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 580 (809)
+|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 777777777777778888888888888887778888888888888888888876554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=193.99 Aligned_cols=180 Identities=22% Similarity=0.117 Sum_probs=132.1
Q ss_pred CcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCcccc-CCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcc
Q 040849 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIG-DLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 450 (809)
-+.++++++++.. +|..+. ..++.|+|++|++++..+..+. ++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 4789999999985 565553 4689999999999998888888 99999999999999999888999999999999999
Q ss_pred cccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccc
Q 040849 451 KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530 (809)
Q Consensus 451 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 530 (809)
+|++++..+..|..+++|++|+|++|++++..|..+.++++| +.|+|++|++++..+..|..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~----------------- 158 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL-QKLYLSQNQISRFPVELIKD----------------- 158 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCCSCCGGGTC------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC-CEEECCCCcCCeeCHHHhcC-----------------
Confidence 999998888889999999999998888875555555555555 44555555554322222200
Q ss_pred cCccccCCCCCCEEeCcCCccccccchhhcCCCC--CCEEeCCCCCcc
Q 040849 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRG--IENLDLSRNNLS 576 (809)
Q Consensus 531 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~LdLs~N~l~ 576 (809)
+..+++|+.|+|++|+|++..+..|..++. ++.|+|++|.+.
T Consensus 159 ----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 159 ----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ----cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 034555666666666666555555555554 356666666665
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-19 Score=177.16 Aligned_cols=155 Identities=26% Similarity=0.279 Sum_probs=105.8
Q ss_pred cEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccc
Q 040849 445 ITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSE 524 (809)
Q Consensus 445 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 524 (809)
+.++.+++.++ .+|..+. ++|++|+|++|++++..|..+.++++| +.|+|++|+++...+..|..+++|++|+|++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINL-KELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCC-cEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34555555554 3333332 456666666666665555556666666 5666666666555555667777777777777
Q ss_pred cccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCC
Q 040849 525 NKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 525 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7777666666777777888888888777 667777778888888888888887777777778888888888888776554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=176.47 Aligned_cols=153 Identities=23% Similarity=0.277 Sum_probs=96.2
Q ss_pred CeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCC
Q 040849 397 ERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNN 476 (809)
Q Consensus 397 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 476 (809)
+.+++++|.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|+|++|++++..|..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~--------------- 75 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--------------- 75 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT---------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH---------------
Confidence 35566666655 3343332 45555555555555444444555555555555555554444444
Q ss_pred cCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccc
Q 040849 477 NLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIP 556 (809)
Q Consensus 477 ~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 556 (809)
+.++++| ++|+|++|+++...+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 76 ---------~~~l~~L-~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 76 ---------FQGLRSL-NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp ---------TTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ---------hhCCcCC-CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 4444444 455555555554445556677777777777777777777777778888888888888887777
Q ss_pred hhhcCCCCCCEEeCCCCCccc
Q 040849 557 SSFSSLRGIENLDLSRNNLSG 577 (809)
Q Consensus 557 ~~~~~l~~L~~LdLs~N~l~~ 577 (809)
..|..+++|+.|+|++|++..
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEEC
T ss_pred HHHhCCCCCCEEEeCCCCcCC
Confidence 778888888888888888764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=188.48 Aligned_cols=187 Identities=22% Similarity=0.298 Sum_probs=118.8
Q ss_pred EEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEccccc
Q 040849 374 ILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNM 453 (809)
Q Consensus 374 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 453 (809)
.+.+..+.+.+.. .+..+++|++|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|++++|.
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 3445555554332 234566777777777777633 2 36666777777777776665443 5666666666666666
Q ss_pred CcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCc
Q 040849 454 LEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPN 533 (809)
Q Consensus 454 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 533 (809)
+++. ..+..+++|++|++++|+++ +. +.+..+++|+.|++++|++++. .
T Consensus 102 l~~~--~~l~~l~~L~~L~L~~n~i~-------------------------~~--~~l~~l~~L~~L~l~~n~l~~~--~ 150 (291)
T 1h6t_A 102 VKDL--SSLKDLKKLKSLSLEHNGIS-------------------------DI--NGLVHLPQLESLYLGNNKITDI--T 150 (291)
T ss_dssp CCCG--GGGTTCTTCCEEECTTSCCC-------------------------CC--GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred CCCC--hhhccCCCCCEEECCCCcCC-------------------------CC--hhhcCCCCCCEEEccCCcCCcc--h
Confidence 6542 23555555555555555554 22 2345566677777777777654 4
Q ss_pred cccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccc
Q 040849 534 SLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 534 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
.+..+++|+.|++++|++++..| +..+++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 56777777777777777776554 77777777777777777753 3 37777888888888887764
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=206.56 Aligned_cols=172 Identities=24% Similarity=0.379 Sum_probs=79.0
Q ss_pred cCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcE
Q 040849 391 RNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLIL 470 (809)
Q Consensus 391 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 470 (809)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++.+..| +..+++|+.|+|++|.+++. ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 344444444444444442 12 24444444444444444443332 44444444444444444431 13444445555
Q ss_pred EeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCc
Q 040849 471 LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNF 550 (809)
Q Consensus 471 L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 550 (809)
|+|++|++++ + ..+..+++| +.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 5555555442 1 234444444 3444444444433 334444555555555555544433 4445555555555555
Q ss_pred cccccchhhcCCCCCCEEeCCCCCccc
Q 040849 551 FQGNIPSSFSSLRGIENLDLSRNNLSG 577 (809)
Q Consensus 551 l~~~~p~~~~~l~~L~~LdLs~N~l~~ 577 (809)
|++. ..+..+++|+.|+|++|++++
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5432 234445555555555555444
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=189.38 Aligned_cols=169 Identities=25% Similarity=0.375 Sum_probs=126.1
Q ss_pred ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEc
Q 040849 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF 449 (809)
Q Consensus 370 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 449 (809)
++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|++++. | .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence 3599999999999865 3 48999999999999999997655 99999999999999999863 3 4899999999999
Q ss_pred ccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccccc
Q 040849 450 DKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSG 529 (809)
Q Consensus 450 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 529 (809)
++|++++. ..+..+++|+.|++++|++++. ..+.. +++|+.|++++|++++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~-------------------------l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR-------------------------LTKLDTLSLEDNQISD 170 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG-------------------------CTTCSEEECCSSCCCC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc-------------------------CCCCCEEEccCCcccc
Confidence 99999864 5688889999999999888742 33434 4455555555555554
Q ss_pred ccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCccc
Q 040849 530 EIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSG 577 (809)
Q Consensus 530 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 577 (809)
..| +..+++|+.|++++|.+++. | .+..+++|+.|++++|+++.
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred chh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 333 55556666666666666543 2 25666666666666666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-21 Score=222.40 Aligned_cols=224 Identities=17% Similarity=0.160 Sum_probs=136.9
Q ss_pred CcccccccCCCCCcEEEEECCCCCCcc-------------------------ccC---ccccCCCCccEEeCCCCCCCcc
Q 040849 63 CQWKGVTCSPRHQRVTALLLPSLLLQG-------------------------SLS---PHIGNLSFLRVLDLKNNSFRNE 114 (809)
Q Consensus 63 c~w~gv~c~~~~~~v~~l~l~~~~l~g-------------------------~~~---~~l~~l~~L~~LdLs~n~l~~~ 114 (809)
-.|.++.|+....+|-.++++.-.+.- ... ..+..+++|+.|+|++|.++ .
T Consensus 285 ~~W~~~~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~L~~L~Ls~n~L~-~ 363 (567)
T 1dce_A 285 VEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-V 363 (567)
T ss_dssp CCCBCTTSSCCSEEEEEEECCGGGTSTTSSEEEEEEEETTTTEEEEEEEETTCSEEEEECCSTTTTSSSCCCCHHHHH-H
T ss_pred eeeccCCcccccceeEEeecCccccccccccceEEEeeccCCCCccccccCCCchhhhcccccCccceeccCChhhHH-h
Confidence 368888887766677777765432210 111 12467889999999999997 7
Q ss_pred CCccccccccCCccccCCCc-------------CcccCCccccCCCcCcEEE-cccCCCCCCCcccccCCCCCCEEEccc
Q 040849 115 IPQEIGYLFRLQFLWLDNNT-------------FGGQIPDNISHCVNLESLR-LGFNELVGKVPRKLGSLSKLRTLAVHY 180 (809)
Q Consensus 115 ~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 180 (809)
+|.+++++++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+. +|+.+.+++
T Consensus 364 Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-----------~L~~l~l~~ 432 (567)
T 1dce_A 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-----------DLRSKFLLE 432 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-----------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-----------hhhhhhhhc
Confidence 89999999999999998775 5566677777788888877 5555432 233333444
Q ss_pred ccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccC
Q 040849 181 NNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLP 260 (809)
Q Consensus 181 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 260 (809)
|.++...+ ..|++|++++|++++ +|. ++.+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++ +|
T Consensus 433 n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 433 NSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred ccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 44432211 125555555555554 333 555555555555555555 445555555555555555555553 44
Q ss_pred hhhhcCCCCCcEEEccCccccccC-CcccccCCCCceEecCCCcceeeCCC
Q 040849 261 SDLGFTLPNLERLNLGENQFTGPI-PASISNASHLMRLTIPINGFSGKVPS 310 (809)
Q Consensus 261 ~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~ 310 (809)
.+. .+++|+.|+|++|++++.. |..+..+++|+.|++++|.+++.+|.
T Consensus 503 -~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 503 -GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp -GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred -ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 333 5666666666666666554 66666666666666666666655443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-19 Score=201.88 Aligned_cols=190 Identities=22% Similarity=0.263 Sum_probs=118.7
Q ss_pred CccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 040849 100 FLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVH 179 (809)
Q Consensus 100 ~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 179 (809)
.+..++++.+.+....+ +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+..| +..+++|++|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34555666666654433 4566777777777777663 23 46667777777777777765443 6677777777777
Q ss_pred cccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCccccccc
Q 040849 180 YNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSL 259 (809)
Q Consensus 180 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 259 (809)
+|++++ +| .+..+++|++|+|++|++++. +.+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+++..
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 777764 22 566777777777777777653 3466677777777777776654 45566666666666666666444
Q ss_pred ChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCccee
Q 040849 260 PSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG 306 (809)
Q Consensus 260 p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 306 (809)
| +. .+++|+.|+|++|++++. ..+..+++|+.|++++|.+.+
T Consensus 170 ~--l~-~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--LA-GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G--GT-TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred h--hc-cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 4 22 566666666666666643 245566666666666666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-21 Score=222.68 Aligned_cols=105 Identities=26% Similarity=0.257 Sum_probs=50.9
Q ss_pred EEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCC
Q 040849 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNN 574 (809)
Q Consensus 495 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 574 (809)
.|+|++|++++ +|. ++.+++|+.|+|++|+|+ .+|..|+++++|+.|+|++|+|++ +| .|+++++|+.|+|++|+
T Consensus 445 ~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 445 VLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp EEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred EEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCC
Confidence 44444444443 232 444445555555555554 444445555555555555555543 33 44455555555555555
Q ss_pred ccccc-ccccccCCCCCeEEccCCcccccCC
Q 040849 575 LSGRI-PKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 575 l~~~~-p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
|++.+ |..|..+++|+.|++++|++++.+|
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 55444 4445555555555555555544443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-19 Score=173.21 Aligned_cols=133 Identities=26% Similarity=0.366 Sum_probs=84.0
Q ss_pred cEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCC-CccCCCCCCEEEccccccccccCccccCCCCCCEEeCc
Q 040849 469 ILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPS-NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMN 547 (809)
Q Consensus 469 ~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 547 (809)
+.+++++|+++ .+|..+.. .+ +.|++++|++++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 34555555553 34443322 33 4566666666554443 36666667777777777766666666667777777777
Q ss_pred CCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCC
Q 040849 548 GNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 548 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
+|+|++..|..|.++++|++|||++|++++.+|..|..+++|++|++++|+++|..+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 7777766666666777777777777777776677777777777777777777665553
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-19 Score=184.00 Aligned_cols=102 Identities=29% Similarity=0.541 Sum_probs=84.6
Q ss_pred cccccccceeccCCceeEEEEEECC---CCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|.+.+.||+|+||+||+|++.. ...++.|||| ++++|||||+++|+|..
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~----- 86 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE----- 86 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----
Confidence 3568889999999999999999753 2234589999 68999999999999876
Q ss_pred CceEEEEEeccCCCChhhhhcCCC---------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKP---------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~---------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|||||||++|+|.++|+.++ .....++|.++++|+.|||+||+|||
T Consensus 87 ~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH 145 (299)
T 4asz_A 87 GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA 145 (299)
T ss_dssp SSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999997542 23456999999999999999999998
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=183.58 Aligned_cols=101 Identities=30% Similarity=0.527 Sum_probs=85.9
Q ss_pred ccccccceeccCCceeEEEEEECC---CCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|...++||+|+||+||+|+++. ...++.|||| ++++|||||+++|+|.. +
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----~ 115 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE-----G 115 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----S
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----C
Confidence 467788999999999999999763 2245689999 68999999999999876 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCC-----------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPE-----------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~-----------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|||||||++|+|.++++.++. ...+++|.++++|+.|||+||+|||
T Consensus 116 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH 175 (329)
T 4aoj_A 116 RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA 175 (329)
T ss_dssp SSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999986532 2346999999999999999999998
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=167.52 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=99.4
Q ss_pred cCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCce
Q 040849 415 GDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSI 494 (809)
Q Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 494 (809)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~------------------------- 91 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLE------------------------- 91 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCC-------------------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCC-------------------------
Confidence 44566777777777666 333 4555556666666655443 222444444444
Q ss_pred EEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCC
Q 040849 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNN 574 (809)
Q Consensus 495 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 574 (809)
+|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|+
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 45555555555555566677777777777777777777777778888888888887333455 57778888888888888
Q ss_pred cccccccccccCCCCCeEEccCCcccc
Q 040849 575 LSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 575 l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
+++. + .+..+++|++|++++|++.+
T Consensus 171 i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 8763 3 67778888888888887753
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=181.76 Aligned_cols=101 Identities=21% Similarity=0.428 Sum_probs=84.1
Q ss_pred ccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
+++++.++||+|+||+||+|++.. +..++.|||| ++++|||||+++|+|..
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~----- 100 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK----- 100 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-----
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE-----
Confidence 356678899999999999999753 2244689999 47899999999999876
Q ss_pred CceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..+||||||++|+|.++|+.+.. ....++|.++.+|+.|||+||+|||
T Consensus 101 ~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH 162 (308)
T 4gt4_A 101 DQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS 162 (308)
T ss_dssp SSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999975421 1245899999999999999999998
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-19 Score=210.50 Aligned_cols=194 Identities=23% Similarity=0.229 Sum_probs=118.9
Q ss_pred eCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCc
Q 040849 400 LLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLT 479 (809)
Q Consensus 400 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 479 (809)
+++.|.+. ..+..+..+++|+.|+|++|++. .+|..+.++++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34445554 55777888888888888888887 56666778888888888888888 77888888888999999999888
Q ss_pred cccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCC-CCEEeCcCCccccccchh
Q 040849 480 GTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR-LEQLGMNGNFFQGNIPSS 558 (809)
Q Consensus 480 ~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~ 558 (809)
.+|..+.++++| ++|+|++|.|+ .+|..|+.+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|..
T Consensus 284 -~lp~~~~~l~~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 284 -SLPAELGSCFQL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp -SCCSSGGGGTTC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred -ccChhhcCCCCC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 778888888888 78899999887 66777888999999999999998888888765432 234788899998888864
Q ss_pred hcCCCCCCEEeCCCC--------CcccccccccccCCCCCeEEccCCcccccCCC
Q 040849 559 FSSLRGIENLDLSRN--------NLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 559 ~~~l~~L~~LdLs~N--------~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
|+.|++++| .+.+.++..+.++..+....+++|-+.+....
T Consensus 361 ------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~ 409 (727)
T 4b8c_D 361 ------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYAT 409 (727)
T ss_dssp -----------------------------------------------CCCGGGCC
T ss_pred ------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccCc
Confidence 556677776 45555566667777788888888888754443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=164.07 Aligned_cols=153 Identities=16% Similarity=0.258 Sum_probs=89.2
Q ss_pred cccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCE
Q 040849 120 GYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEV 199 (809)
Q Consensus 120 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 199 (809)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55666666666666666 444 4666666666666666553 2235666667777777777666656666666677777
Q ss_pred EEcccCcccccCcccccCCCCccEEEeecCc-CCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCc
Q 040849 200 LSASANQFVGQIPKTLSQLKRMRFIGFGVNK-LSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGEN 278 (809)
Q Consensus 200 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N 278 (809)
|++++|++++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+. .+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~-~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIE-DFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGG-GCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhc-cCCCCCEEEeeCc
Confidence 7777776666666666666666666666665 33 233 34555555555555555542 22 222 3455555555555
Q ss_pred ccc
Q 040849 279 QFT 281 (809)
Q Consensus 279 ~l~ 281 (809)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=177.24 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=114.3
Q ss_pred CCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEE
Q 040849 392 NLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILL 471 (809)
Q Consensus 392 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 471 (809)
++.++..+++++|.+++.. .+..+++|++|++++|+++. +| .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556677777887777443 46677777777777777763 33 46666666666666666665433 6666666666
Q ss_pred eCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCcc
Q 040849 472 GLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFF 551 (809)
Q Consensus 472 ~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 551 (809)
++++|++++ +|. +.. ++|+.|+|++|++++. ..+..+++|+.|++++|++
T Consensus 91 ~L~~N~l~~-l~~--------------------------~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 91 SVNRNRLKN-LNG--------------------------IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp ECCSSCCSC-CTT--------------------------CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccCC-cCc--------------------------ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcC
Confidence 666666653 221 111 6677777777777653 2477777777777777777
Q ss_pred ccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccccc
Q 040849 552 QGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGE 602 (809)
Q Consensus 552 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~ 602 (809)
++. | .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 141 ~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 141 KSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 754 3 577778888888888888766 5677788888888888887754
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-18 Score=178.87 Aligned_cols=97 Identities=35% Similarity=0.483 Sum_probs=83.8
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~ 756 (809)
|+...+++.+.++||+|+||+||+|++.+ .|||| ++++|||||+++|+|.
T Consensus 31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~-----~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~--- 102 (307)
T 3omv_A 31 WEIEASEVMLSTRIGSGSFGTVYKGKWHG-----DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT--- 102 (307)
T ss_dssp CBCCTTSCCEEEECCCCSSSEEEEEESSS-----EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC---
T ss_pred cEEcHHHeEEeeEEeeCCCcEEEEEEECC-----cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE---
Confidence 34455678889999999999999998642 48888 6899999999999975
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.+|||||||++|+|.++|+..+ ..++|.++.+|+.|||+||+|||
T Consensus 103 ---~~~~~iVmEy~~gGsL~~~l~~~~---~~l~~~~~~~i~~qia~gL~yLH 149 (307)
T 3omv_A 103 ---KDNLAIVTQWCEGSSLYKHLHVQE---TKFQMFQLIDIARQTAQGMDYLH 149 (307)
T ss_dssp ---SSSCEEEEECCSSCBHHHHHHTSC---CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEEEEEcCCCCCHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999998543 45999999999999999999998
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-18 Score=174.70 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=116.9
Q ss_pred CCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEE
Q 040849 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTL 176 (809)
Q Consensus 97 ~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 176 (809)
.+.+++.+++++|.+++.. .+..+++|++|++++|.++. +| .+..+++|++|+|++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556677777777777443 57777888888888887773 44 57777888888888888775544 7778888888
Q ss_pred EcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccc
Q 040849 177 AVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQ 256 (809)
Q Consensus 177 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 256 (809)
+|++|++++ +|.. .. ++|++|++++|++++. +.+..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 888888775 3332 22 7788888888877763 3477777777777777777754 2 4666666666666666666
Q ss_pred cccChhhhcCCCCCcEEEccCcccccc
Q 040849 257 GSLPSDLGFTLPNLERLNLGENQFTGP 283 (809)
Q Consensus 257 ~~~p~~~~~~l~~L~~L~Ls~N~l~~~ 283 (809)
+. ..+. .+++|+.|++++|.+++.
T Consensus 164 ~~--~~l~-~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLT-RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTST-TCCCCCEEEEEEEEEECC
T ss_pred ch--HHhc-cCCCCCEEeCCCCcccCC
Confidence 43 2232 566666777766666543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=178.21 Aligned_cols=102 Identities=11% Similarity=-0.047 Sum_probs=84.6
Q ss_pred ccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCC-EEEeeCCeeecccCcCCcCCCCccEEE
Q 040849 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQ-RLGLQGNKFLGEIPSSIGNLTLLITLS 448 (809)
Q Consensus 370 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 448 (809)
++|+.+++++|+++...+..|.++.+|+.|+|.+| ++...+.+|.++++|+ .+++.+ +++...+..|.+|++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 45888888888888777778888888999988887 7767778888888888 888888 67767778888888888888
Q ss_pred cccccCcccCCccccCCCCCcEEeC
Q 040849 449 FDKNMLEGSIPSSLGKCQNLILLGL 473 (809)
Q Consensus 449 L~~N~l~~~~p~~l~~l~~L~~L~L 473 (809)
++.|.++.+.+.+|.++++|+.++.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 8888888887888888888888763
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=159.05 Aligned_cols=132 Identities=24% Similarity=0.307 Sum_probs=98.4
Q ss_pred cEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCc-chhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcc
Q 040849 445 ITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPT-EVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVS 523 (809)
Q Consensus 445 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 523 (809)
+++++++|.++ .+|..+.. +|++|++++|++++..+. .+..++.| ++|+|++|++++..|..|..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-CEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45556666554 34443332 666777777777654443 36666777 677777777777777788888888888888
Q ss_pred ccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccc
Q 040849 524 ENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP 580 (809)
Q Consensus 524 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 580 (809)
+|+|++..|..|.++++|++|+|++|++++.+|..|..+++|+.|+|++|++++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888888888888888888888888888888888888888888888888888887665
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=176.36 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=80.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||+||+|+....+ +.|||| ++++|||||++++++.. +
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~--~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~-----~ 95 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDG--RQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEE-----N 95 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTC--CEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----T
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCC--CEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEE-----C
Confidence 368999999999999999999976544 489999 57899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+|||||||+||+|.++|+.++ ...+++.+++.|+.||+.||+|||
T Consensus 96 ~~~yiVmEy~~gg~L~~~i~~~~--~~~~~e~~~~~~~~qi~~aL~ylH 142 (350)
T 4b9d_A 96 GSLYIVMDYCEGGDLFKRINAQK--GVLFQEDQILDWFVQICLALKHVH 142 (350)
T ss_dssp TEEEEEEECCTTCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCcHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999997542 345789999999999999999998
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=175.49 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=85.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------cCCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
.+.|...++||+|+||+||+|+....+ +.|||| +.++|||||++++++.. ++.+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g--~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~-----~~~~~ivm 129 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTG--FQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVRE-----GPWVNIFM 129 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEE-----TTEEEEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCC--CEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEEEEEE
Confidence 356888899999999999999976544 499999 57899999999999765 78899999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||+||+|.++|+++ ..+++.++..|+.||++||+|||
T Consensus 130 Ey~~gg~L~~~l~~~----~~l~e~~~~~~~~qi~~aL~ylH 167 (336)
T 4g3f_A 130 ELLEGGSLGQLIKQM----GCLPEDRALYYLGQALEGLEYLH 167 (336)
T ss_dssp CCCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999754 35999999999999999999998
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=173.27 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=85.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+ +.|||| +.++|||||++++++.+ +
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~--~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~ 104 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATS--REYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-----D 104 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----S
T ss_pred cccEEEEEEecccCeEEEEEEECCCC--CEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----C
Confidence 57999999999999999999976544 499999 57899999999999654 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+|||||||+||+|.+++++. ..+++.++..|+.||+.||+|||
T Consensus 105 ~~~yivmEy~~gG~L~~~i~~~----~~l~e~~~~~~~~qi~~al~ylH 149 (311)
T 4aw0_A 105 EKLYFGLSYAKNGELLKYIRKI----GSFDETCTRFYTAEIVSALEYLH 149 (311)
T ss_dssp SEEEEEECCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999754 45999999999999999999998
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=173.98 Aligned_cols=96 Identities=29% Similarity=0.402 Sum_probs=81.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.+|.+.++||+|+||+||+|++.+ + .|||| ..++|||||+++|+|.... .....+|
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~g--~--~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~-~~~~~~~ 77 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWRG--E--EVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLW 77 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETT--E--EEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEECC--E--EEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecC-CCceEEE
Confidence 357788999999999999999742 3 89999 4679999999999987621 1124689
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||||++|+|.++++.+ .++|+++.+|+.|+|+||+|||
T Consensus 78 lV~Ey~~~gsL~~~l~~~-----~l~~~~~~~i~~~ia~gl~ylH 117 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNRY-----TVTVEGMIKLALSTASGLAHLH 117 (303)
T ss_dssp EEEECCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCcHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999743 4899999999999999999998
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-17 Score=174.64 Aligned_cols=94 Identities=31% Similarity=0.355 Sum_probs=84.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+.|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ++.+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~--~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-----~~~~ 146 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGK--LVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-----GDEL 146 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCC--EEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEE
Confidence 468899999999999999999765444 99999 56899999999999776 7889
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||||++|+|.+++++. .+++.++..|+.||+.||+|||
T Consensus 147 ~ivmEy~~gg~L~~~l~~~-----~l~e~~~~~~~~qi~~aL~ylH 187 (346)
T 4fih_A 147 WVVMEFLEGGALTDIVTHT-----RMNEEQIAAVCLAVLQALSVLH 187 (346)
T ss_dssp EEEECCCTTEEHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999742 4899999999999999999998
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=170.65 Aligned_cols=263 Identities=11% Similarity=0.088 Sum_probs=175.4
Q ss_pred CCCCcEEEeccccCCCCCCCchhhhhcccc-cCCccEEeccccccc--cccchhhhhccccCcEEEccCCcccccCCccc
Q 040849 314 LHKLQWVSISMNHLGNGEKDDLEFVNSLVN-ASRLELLGININNFG--GMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL 390 (809)
Q Consensus 314 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~--~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l 390 (809)
+.+++.|.++++- . ..++ ..+.. +++|+.|+++.|.+. ...+..+ +. +..+.+..|.+ .+..|
T Consensus 24 ~~~l~~L~l~g~i-~---~~~~---~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~-~~~~~~~~~~I---~~~aF 89 (329)
T 3sb4_A 24 ANSITHLTLTGKL-N---AEDF---RHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PN-GKFYIYMANFV---PAYAF 89 (329)
T ss_dssp HHHCSEEEEEEEE-C---HHHH---HHHHHSCTTCCEEEEEEEEECCEEESSSSS---GG-GCCEEECTTEE---CTTTT
T ss_pred hCceeEEEEeccc-c---HHHH---HHHHHhhccCeEEecCcceeEEecCccccc---cc-ccccccccccc---CHHHh
Confidence 5578888887642 1 1122 23333 678888888888876 2221111 11 34455555533 34456
Q ss_pred cC--------CCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccC----cccC
Q 040849 391 RN--------LVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNML----EGSI 458 (809)
Q Consensus 391 ~~--------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~ 458 (809)
.+ +++|+.|+|.+ .++...+.+|.+|++|+.|++++|.+....+..|.++.++..+.+..+.. ....
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence 66 89999999988 88877778899999999999999988878888888888888777766322 2233
Q ss_pred CccccCCCCCc-EEeCcCCcC------------------------ccccCcch-hcccCCceEEEccCCcCcccCCCCcc
Q 040849 459 PSSLGKCQNLI-LLGLSNNNL------------------------TGTIPTEV-IGLSSLSIYLDLSQNQLNGTLPSNFG 512 (809)
Q Consensus 459 p~~l~~l~~L~-~L~Ls~N~l------------------------~~~~p~~~-~~l~~l~~~L~Ls~N~l~~~~p~~~~ 512 (809)
..+|.++..|+ .+++....- .......+ ..+++| +.++|++|+++.+.+..|.
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L-~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL-VSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC-CEEECTTBCCCEECTTTTT
T ss_pred ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCC-eEEECCCCCcceecHhhhh
Confidence 44565666665 343332110 00000011 125566 6788888888877777788
Q ss_pred CCCCCCEEEccccccccccCccccCCCCCC-EEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCe
Q 040849 513 ILKNLGVLDVSENKLSGEIPNSLGSCVRLE-QLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQN 591 (809)
Q Consensus 513 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~ 591 (809)
++++|+.|+|++| ++...+.+|.+|++|+ .+++.+ .++...+.+|.++++|+.+++++|+++...+.+|.++++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 8888888888877 7766677788888888 888877 677667778888888888888888888777778888888887
Q ss_pred EEc
Q 040849 592 LNL 594 (809)
Q Consensus 592 l~l 594 (809)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 753
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-17 Score=170.88 Aligned_cols=97 Identities=27% Similarity=0.316 Sum_probs=85.5
Q ss_pred ccccccceeccCCceeEEEEEECC-CCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~-~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+... +.+++.|||| ++++|||||++++++.. +
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~ 98 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQT-----E 98 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEE-----T
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----C
Confidence 579999999999999999998643 2345689999 56899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|||||||+||+|.+++++. ..+++.++..|+.||+.||+|||
T Consensus 99 ~~~~ivmEy~~gg~L~~~l~~~----~~l~e~~~~~~~~qi~~aL~ylH 143 (304)
T 3ubd_A 99 GKLYLILDFLRGGDLFTRLSKE----VMFTEEDVKFYLAELALALDHLH 143 (304)
T ss_dssp TEEEEEECCCTTCEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999754 45999999999999999999998
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-17 Score=159.57 Aligned_cols=131 Identities=23% Similarity=0.316 Sum_probs=96.8
Q ss_pred cEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcC
Q 040849 469 ILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNG 548 (809)
Q Consensus 469 ~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 548 (809)
+++++++|+++ .+|..+. +.+ +.|++++|+++ .+|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 34555565555 4444332 234 56677777766 4556777778888888888888877777788888888888888
Q ss_pred CccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCC
Q 040849 549 NFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 549 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
|+|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 88888777788888888888888888887777778888888888888888876544
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-17 Score=169.31 Aligned_cols=96 Identities=29% Similarity=0.446 Sum_probs=81.8
Q ss_pred cccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 707 SLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 707 ~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
...++||+|+||+||+|.....+. .|||| ++++|||||++++++... ..+++.+|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~--~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~~~ 105 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTV--EVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIV 105 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCe--EEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcEEE
Confidence 556789999999999999765544 89999 578999999999997642 12245689
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||||++|+|.+++++. ..+++.++..|+.|||+||+|||
T Consensus 106 lvmEy~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~ylH 146 (290)
T 3fpq_A 106 LVTELMTSGTLKTYLKRF----KVMKIKVLRSWCRQILKGLQFLH 146 (290)
T ss_dssp EEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999753 45899999999999999999998
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-17 Score=153.08 Aligned_cols=133 Identities=19% Similarity=0.158 Sum_probs=97.4
Q ss_pred CCCccEEeCCCCCCC-ccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEE
Q 040849 98 LSFLRVLDLKNNSFR-NEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTL 176 (809)
Q Consensus 98 l~~L~~LdLs~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 176 (809)
.++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888887 66777778888888888888887755 667778888888888888877677777777788888
Q ss_pred EcccccCcccC-CccCCCCCCCCEEEcccCcccccCc---ccccCCCCccEEEeecCcCC
Q 040849 177 AVHYNNLSGQI-PSSFGNLSSLEVLSASANQFVGQIP---KTLSQLKRMRFIGFGVNKLS 232 (809)
Q Consensus 177 ~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~n~l~ 232 (809)
+|++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|+++.|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888777532 2567777777777777777775544 35666667777766666654
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-17 Score=176.35 Aligned_cols=95 Identities=31% Similarity=0.351 Sum_probs=85.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.+.|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ++.
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~--~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-----~~~ 222 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGK--LVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-----GDE 222 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCC--EEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEE-----CCE
Confidence 4569999999999999999999765444 99999 57899999999999776 788
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||||||+||+|.++++.. .+++.++..|+.||++||+|||
T Consensus 223 ~~iVmEy~~gG~L~~~i~~~-----~l~e~~~~~~~~qil~aL~ylH 264 (423)
T 4fie_A 223 LWVVMEFLEGGALTDIVTHT-----RMNEEQIAAVCLAVLQALSVLH 264 (423)
T ss_dssp EEEEEECCTTEEHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999743 4899999999999999999998
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-17 Score=175.58 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=90.9
Q ss_pred cHHHHHHhcccccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCC-CCcceeeEe
Q 040849 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSI-RHRNLVKII 749 (809)
Q Consensus 695 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l-~H~niv~l~ 749 (809)
...+|+...++|++.+.||+|+||+||+|++... ...+.|||| +++ +|||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 3456777888999999999999999999997542 234689999 244 459999999
Q ss_pred eeeeccccCCCceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 750 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+|.. +++.+|||||||++|+|.++|+.++. ....++|.++..|+.|||+||+|||
T Consensus 135 g~~~~----~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH 202 (353)
T 4ase_A 135 GACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA 202 (353)
T ss_dssp EEECC----TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEe----cCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh
Confidence 99864 24568999999999999999975421 1345899999999999999999998
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=150.46 Aligned_cols=133 Identities=22% Similarity=0.206 Sum_probs=108.3
Q ss_pred CCCcEEeCcCCcCc-cccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEE
Q 040849 466 QNLILLGLSNNNLT-GTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 544 (809)
Q Consensus 466 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 544 (809)
++|+.|++++|+++ +.+|..+..++.| +.|++++|++++. ..+..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56777777777776 5667766777777 6777777777765 677888899999999999988788888889999999
Q ss_pred eCcCCcccccc-chhhcCCCCCCEEeCCCCCcccccc---cccccCCCCCeEEccCCcccc
Q 040849 545 GMNGNFFQGNI-PSSFSSLRGIENLDLSRNNLSGRIP---KYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 545 ~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p---~~~~~l~~L~~l~ls~N~l~g 601 (809)
++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999998753 3788899999999999999987766 578889999999999998763
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-16 Score=150.00 Aligned_cols=132 Identities=24% Similarity=0.312 Sum_probs=99.9
Q ss_pred cEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcC
Q 040849 469 ILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNG 548 (809)
Q Consensus 469 ~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 548 (809)
+.+++++|+++ .+|..+. +++ +.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSA-TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCCC--CCC-cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45566666655 3443322 344 5677777777766666677888888888888888877667778888888888888
Q ss_pred CccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCC
Q 040849 549 NFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 549 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|+++|.+|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88887777778888888888888888887777777888888888888888887665
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=147.93 Aligned_cols=128 Identities=21% Similarity=0.269 Sum_probs=89.7
Q ss_pred CCCcEEeCcCCcCc-cccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEE
Q 040849 466 QNLILLGLSNNNLT-GTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 544 (809)
Q Consensus 466 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 544 (809)
++|+.|++++|+++ +.+|..+..++++ +.|++++|++++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEEL-EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTC-CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCC-cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34455555555554 4444444455555 4555555555544 456677888888888888887777777778888888
Q ss_pred eCcCCccccc-cchhhcCCCCCCEEeCCCCCcccccc---cccccCCCCCeEEccC
Q 040849 545 GMNGNFFQGN-IPSSFSSLRGIENLDLSRNNLSGRIP---KYFENFLFLQNLNLSF 596 (809)
Q Consensus 545 ~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p---~~~~~l~~L~~l~ls~ 596 (809)
++++|.+++. .|..+..+++|+.|++++|++++..+ ..+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888864 45778888888888888888887766 5788888888888763
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-17 Score=150.08 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=76.5
Q ss_pred CCccEEeCCCCCCC-ccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEE
Q 040849 99 SFLRVLDLKNNSFR-NEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLA 177 (809)
Q Consensus 99 ~~L~~LdLs~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 177 (809)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666666 55666666666666666666666644 4566666666666666666655565555666666666
Q ss_pred cccccCccc-CCccCCCCCCCCEEEcccCcccccCc---ccccCCCCccEEEe
Q 040849 178 VHYNNLSGQ-IPSSFGNLSSLEVLSASANQFVGQIP---KTLSQLKRMRFIGF 226 (809)
Q Consensus 178 Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L 226 (809)
+++|++++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 666666642 23556666666666666666655443 34555555555544
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=164.77 Aligned_cols=103 Identities=19% Similarity=0.368 Sum_probs=81.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeecccc-----
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDF----- 757 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~----- 757 (809)
++|+..+.||+|+||+||+|+....+. .|||| ++++|||||++++++.....
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~--~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~ 82 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDC--NYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ 82 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCC--EEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCC--EEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence 468999999999999999999765444 89999 67899999999999765211
Q ss_pred --CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 --QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 --~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++..+|||||||++|+|.++++.+.. ....++..++.|+.||++||+|||
T Consensus 83 ~~~~~~~l~ivmE~~~gg~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~al~ylH 135 (299)
T 4g31_A 83 PSSPKVYLYIQMQLCRKENLKDWMNGRCT-IEERERSVCLHIFLQIAEAVEFLH 135 (299)
T ss_dssp ----CEEEEEEEECCCSCCHHHHHHTCCS-GGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEEecCCCCcHHHHHHhcCC-CChhHHHHHHHHHHHHHHHHHHHH
Confidence 123357999999999999999986532 233567788999999999999998
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=148.96 Aligned_cols=109 Identities=29% Similarity=0.387 Sum_probs=63.8
Q ss_pred CCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEc
Q 040849 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAV 178 (809)
Q Consensus 99 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 178 (809)
+.|++|+|++|.|+ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35666666666665 45556666666666666666666555555666666666666666665555555555556666666
Q ss_pred ccccCcccCCccCCCCCCCCEEEcccCccc
Q 040849 179 HYNNLSGQIPSSFGNLSSLEVLSASANQFV 208 (809)
Q Consensus 179 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 208 (809)
++|++++..+..|..+++|++|++++|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 665555444444555555555555555544
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-16 Score=162.07 Aligned_cols=94 Identities=23% Similarity=0.392 Sum_probs=79.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+.... ++.|||| +.++|||||++++++.. +
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~--~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~ 85 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTT--GQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKS-----K 85 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTT--CCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----S
T ss_pred eCeEEEEEEecCcCeEEEEEEECCC--CCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----C
Confidence 6799999999999999999996544 4499999 46899999999999665 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..||||||| +|+|.+++.++ ..+++.++..|+.||+.||+|||
T Consensus 86 ~~~~ivmEy~-~g~L~~~l~~~----~~l~e~~~~~~~~qi~~al~ylH 129 (275)
T 3hyh_A 86 DEIIMVIEYA-GNELFDYIVQR----DKMSEQEARRFFQQIISAVEYCH 129 (275)
T ss_dssp SEEEEEEECC-CEEHHHHHHHS----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCC-CCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999 68999999754 45999999999999999999998
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=145.13 Aligned_cols=133 Identities=23% Similarity=0.237 Sum_probs=84.6
Q ss_pred CcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCcc
Q 040849 63 CQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDN 142 (809)
Q Consensus 63 c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 142 (809)
|+|.+|.|+.. .++ .+|..+ .++|++|++++|++++..+..|+.+++|++|+|++|.+++..+..
T Consensus 7 C~~~~l~~~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (177)
T 2o6r_A 7 CSGTEIRCNSK------------GLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV 71 (177)
T ss_dssp EETTEEECCSS------------CCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred eCCCEEEecCC------------CCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence 77888888642 222 233322 257777777777777666666677777777777777777555555
Q ss_pred ccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCccccc
Q 040849 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ 210 (809)
Q Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 210 (809)
|.++++|++|+|++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+.
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 66666777777777766655555566666666666666666654444456666666666666665543
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-15 Score=171.22 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=85.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeeccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
.++|+..++||+|+||+||+|+....+ +.|||| +.++|||||++++++.+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg--~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~-- 263 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTG--KMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-- 263 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC--
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCC--CEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEE--
Confidence 467999999999999999999976544 499999 35689999999999654
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.+|||||||+||+|.++|++. ..+++.++..|+.||+.||+|||
T Consensus 264 ---~~~lylVmEy~~GGdL~~~l~~~----~~l~E~~a~~y~~qIl~aL~yLH 309 (689)
T 3v5w_A 264 ---PDKLSFILDLMNGGDLHYHLSQH----GVFSEADMRFYAAEIILGLEHMH 309 (689)
T ss_dssp ---SSEEEEEECCCCSCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999754 45999999999999999999999
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-15 Score=142.11 Aligned_cols=133 Identities=16% Similarity=0.171 Sum_probs=99.7
Q ss_pred ccCCCCCcEEeCcCCcCccccCcchhccc-CCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCC
Q 040849 462 LGKCQNLILLGLSNNNLTGTIPTEVIGLS-SLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 540 (809)
Q Consensus 462 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 540 (809)
+.++++|+.|++++|+++ .+|. +..+. ++ ++|++++|++++. ..+..+++|++|+|++|++++..|..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L-~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCC-CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 445566666666666666 3343 33333 55 6777777777765 56778888999999999998665566688999
Q ss_pred CCEEeCcCCccccccch--hhcCCCCCCEEeCCCCCccccccc----ccccCCCCCeEEccCCcccc
Q 040849 541 LEQLGMNGNFFQGNIPS--SFSSLRGIENLDLSRNNLSGRIPK----YFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 541 L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~~p~----~~~~l~~L~~l~ls~N~l~g 601 (809)
|++|++++|.++ .+|. .+..+++|+.|++++|+++. +|. .+..+++|+.||+++|....
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999986 4555 78889999999999999984 455 48889999999999988764
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=162.20 Aligned_cols=99 Identities=20% Similarity=0.340 Sum_probs=84.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecc-ccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASV-DFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~-~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+ +.|||| +.++|||||++++++... .+.+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~--~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~ 131 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTG--QQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF 131 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTC--CEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCC--CEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccC
Confidence 57999999999999999999976544 499999 468999999999987642 24456
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+|||||||+ |+|.+++..+ ..+++.++..|++||+.||+|||
T Consensus 132 ~~~~ivmE~~~-g~L~~~i~~~----~~l~~~~~~~~~~qil~al~ylH 175 (398)
T 4b99_A 132 KSVYVVLDLME-SDLHQIIHSS----QPLTLEHVRYFLYQLLRGLKYMH 175 (398)
T ss_dssp CCEEEEEECCS-EEHHHHHTSS----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCC-CCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999996 7899999754 46999999999999999999998
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-17 Score=160.37 Aligned_cols=132 Identities=22% Similarity=0.261 Sum_probs=79.6
Q ss_pred cccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCC
Q 040849 461 SLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 540 (809)
Q Consensus 461 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 540 (809)
.+..+++|++|++++|++++ +| .+..+++| ++|++++|+++ .+|..+..+++|++|+|++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 45555555555555555553 44 55555555 45555555555 344445555666666666666664 33 4666667
Q ss_pred CCEEeCcCCccccccc-hhhcCCCCCCEEeCCCCCcccccccc----------cccCCCCCeEEccCCccc
Q 040849 541 LEQLGMNGNFFQGNIP-SSFSSLRGIENLDLSRNNLSGRIPKY----------FENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 541 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------~~~l~~L~~l~ls~N~l~ 600 (809)
|++|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|+.|| +|+++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777777765332 45667777777777777776665543 66777777776 45444
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-15 Score=142.49 Aligned_cols=132 Identities=20% Similarity=0.231 Sum_probs=84.6
Q ss_pred cccCCCCccEEeCCCCCCCccCCccccccc-cCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCC
Q 040849 94 HIGNLSFLRVLDLKNNSFRNEIPQEIGYLF-RLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSK 172 (809)
Q Consensus 94 ~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 172 (809)
.+.++.+|++|+|++|.++. +|. +..+. +|++|+|++|.+++. +.|..+++|++|+|++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45567777888888887774 343 44444 777777777777754 45777777777777777776554444567777
Q ss_pred CCEEEcccccCcccCCc--cCCCCCCCCEEEcccCcccccCcc----cccCCCCccEEEeecCcC
Q 040849 173 LRTLAVHYNNLSGQIPS--SFGNLSSLEVLSASANQFVGQIPK----TLSQLKRMRFIGFGVNKL 231 (809)
Q Consensus 173 L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L~~n~l 231 (809)
|++|+|++|+++ .+|. .+..+++|++|++++|.++. +|. .+..+++|+.|+++.|..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 777777777775 3444 56666777777777776653 333 255555555555555543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=149.50 Aligned_cols=196 Identities=11% Similarity=0.084 Sum_probs=100.9
Q ss_pred CCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCc
Q 040849 395 NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLS 474 (809)
Q Consensus 395 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 474 (809)
+|+.+.+.+ .++...+.+|.+|++|+.+++++|+++......|. +.+|+.+.+.++ +..+...+|.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 344554443 34434444555555555555555555444333443 345555555422 444444455555555555555
Q ss_pred CCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccc-----cccCccccCCCCCCEEeCcCC
Q 040849 475 NNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLS-----GEIPNSLGSCVRLEQLGMNGN 549 (809)
Q Consensus 475 ~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N 549 (809)
.| ++..-..+|.+ .++ +.+.+ .|.++...+..|.++++|+.+++.+|.+. ...+.+|.+|++|+.++|. |
T Consensus 235 ~~-l~~I~~~aF~~-~~L-~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGI-TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp TT-CCEECTTTTTT-CCC-SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred CC-ccCcccccccc-CCc-cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 43 33222223333 344 44555 33444444555666666666666655543 3445556666666666666 3
Q ss_pred ccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccc
Q 040849 550 FFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 550 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 600 (809)
.++..-..+|.++++|+.++|..| ++...+.+|.++ +|+.+++++|.+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 355555556666666666666433 555555566666 6666666666443
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-15 Score=168.17 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=85.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.++|++.+.||+|+||+||+|+.+..+ +.|||| +.++|||||++++++.. ++.
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg--~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-----~~~ 228 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATG--NNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-----DNE 228 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTC--CEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEC-----SSE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCC--CEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----CCE
Confidence 367999999999999999999976544 489999 56899999999999654 788
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||||||+||+|.++|..+. ..+++.++..|++||++||+|||
T Consensus 229 ~~iv~E~~~gg~L~~~i~~~~---~~l~e~~~~~~~~qi~~al~ylH 272 (573)
T 3uto_A 229 MVMIYEFMSGGELFEKVADEH---NKMSEDEAVEYMRQVCKGLCHMH 272 (573)
T ss_dssp EEEEEECCCCCBHHHHHTCTT---SCEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCCCcHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997542 45899999999999999999998
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=136.53 Aligned_cols=108 Identities=20% Similarity=0.276 Sum_probs=80.5
Q ss_pred eEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCC
Q 040849 494 IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573 (809)
Q Consensus 494 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 573 (809)
+.+++++|+++. +|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 356666666663 44443 267777888888887777777778888888888888888777777778888888888888
Q ss_pred CcccccccccccCCCCCeEEccCCcccccCC
Q 040849 574 NLSGRIPKYFENFLFLQNLNLSFNHFEGEVP 604 (809)
Q Consensus 574 ~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 604 (809)
+|++..+..|..+++|++|++++|++++..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 8887777778888888888888888776554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-17 Score=158.40 Aligned_cols=155 Identities=23% Similarity=0.288 Sum_probs=95.1
Q ss_pred ccCCCCCCeeeCCCccceecCCc------cccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCcccc
Q 040849 390 LRNLVNLERLLLEGNQFTGRIPG------SIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLG 463 (809)
Q Consensus 390 l~~l~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 463 (809)
+.....++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 55667788888888888877765 56666666666666666664 34 5555555666666665555 3444444
Q ss_pred CCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccC-ccccCCCCCC
Q 040849 464 KCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP-NSLGSCVRLE 542 (809)
Q Consensus 464 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~ 542 (809)
.+++|++|++++|+++ +. | .+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 91 ~~~~L~~L~L~~N~l~-------------------------~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 91 VADTLEELWISYNQIA-------------------------SL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHHHCSEEEEEEEECC-------------------------CH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred cCCcCCEEECcCCcCC-------------------------cC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 4445555555555554 32 2 34455566666666666664322 3566677777
Q ss_pred EEeCcCCccccccchh----------hcCCCCCCEEeCCCCCcc
Q 040849 543 QLGMNGNFFQGNIPSS----------FSSLRGIENLDLSRNNLS 576 (809)
Q Consensus 543 ~L~Ls~N~l~~~~p~~----------~~~l~~L~~LdLs~N~l~ 576 (809)
+|++++|++++.+|.. +..+++|+.|| +|.++
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777776665542 67778888776 56555
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=155.39 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=83.7
Q ss_pred HhcccccccceeccCCceeEEEEEEC-CCCceeEEEEe------------------cCC-CCcceeeEeeeeeccccCCC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILN-HDDHETLVAVK------------------RSI-RHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~~~~vavK------------------~~l-~H~niv~l~~~~~~~~~~~~ 760 (809)
...+.|+..+.||+|+||+||+|+.+ +..+++.|||| +.+ +|||||++++++.. +
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~-----~ 92 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRK-----N 92 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEE-----T
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEE-----C
Confidence 34577999999999999999999854 23356789999 234 79999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|||||||++|+|.++++ .+++.++..|++|++.||+|||
T Consensus 93 ~~~~lvmE~~~g~~L~~~~~-------~l~~~~~~~~~~qll~al~ylH 134 (361)
T 4f9c_A 93 DHVVIAMPYLEHESFLDILN-------SLSFQEVREYMLNLFKALKRIH 134 (361)
T ss_dssp TEEEEEEECCCCCCHHHHHT-------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCcccHHHHHc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999984 2889999999999999999999
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=142.87 Aligned_cols=200 Identities=14% Similarity=0.061 Sum_probs=113.3
Q ss_pred CccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCC
Q 040849 92 SPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLS 171 (809)
Q Consensus 92 ~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 171 (809)
..+|.++++|+.++|.. .++.+-..+|.++++|+.+++.++ ++..-..+|.++.+|+.+.+..+ +.......|.+..
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 34677788888888864 366566677888888888888754 55455566778888877766543 3334445565554
Q ss_pred CCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccC
Q 040849 172 KLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251 (809)
Q Consensus 172 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 251 (809)
.++...... ........|.++++|+.+.+.++. .......|.++.+|+.+.+..+ ++......+.++..|+.+.+.
T Consensus 141 ~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 433333222 222334567777777777776543 3344456677777777766554 443444556666666666655
Q ss_pred CcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCC
Q 040849 252 VNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPIN 302 (809)
Q Consensus 252 ~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n 302 (809)
.+... +....+ ...+|+.+.+..+ ++......+..+..++.+.+..+
T Consensus 217 ~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 217 NSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp TTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred CCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 44322 112222 3445555555432 22223334445555555555444
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=159.39 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=91.2
Q ss_pred cHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeee
Q 040849 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITS 751 (809)
Q Consensus 695 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~ 751 (809)
.+.++....++|+..++||+|+||+||+|+....+. .|||| +.++|||||+++++
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~--~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~ 142 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADK--VFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYA 142 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTE--EEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCc--EEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 345556667899999999999999999999776544 89999 35789999999999
Q ss_pred eeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 752 CASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 752 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|.. ++..|+|||||++|+|.+++++. ...+++.++..|+.|++.||+|||
T Consensus 143 ~~~-----~~~~~lV~Ey~~gg~L~~~l~~~---~~~l~e~~~~~~~~qi~~aL~~LH 192 (437)
T 4aw2_A 143 FQD-----DNNLYLVMDYYVGGDLLTLLSKF---EDRLPEEMARFYLAEMVIAIDSVH 192 (437)
T ss_dssp EEC-----SSEEEEEECCCTTCBHHHHHHTT---TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred Eee-----CCEEEEEEecCCCCcHHHHHHHc---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 765 78899999999999999999853 245899999999999999999998
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-14 Score=134.37 Aligned_cols=107 Identities=22% Similarity=0.301 Sum_probs=80.4
Q ss_pred eEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCC
Q 040849 494 IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573 (809)
Q Consensus 494 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 573 (809)
..+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|+.|||++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 35677777765 4555443 67788888888888777777888888888888888888766666778888888888888
Q ss_pred CcccccccccccCCCCCeEEccCCcccccC
Q 040849 574 NLSGRIPKYFENFLFLQNLNLSFNHFEGEV 603 (809)
Q Consensus 574 ~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~ 603 (809)
+|++..+..|..+++|++|++++|++.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 888776667888888888888888877544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-13 Score=145.38 Aligned_cols=242 Identities=13% Similarity=0.073 Sum_probs=180.2
Q ss_pred CccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEe
Q 040849 346 RLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425 (809)
Q Consensus 346 ~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 425 (809)
+|+.+.+..+ +...-...+... +|+.+.+.. .+....+..|.++++|+.+++++|.++......|. +.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 5777777655 443333444442 488888875 66666677888888888888888888866666776 578888888
Q ss_pred eCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCc-
Q 040849 426 QGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLN- 504 (809)
Q Consensus 426 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~- 504 (809)
..+ +.......|.++++|+.+++..| ++.+...+|.+ .+|+.+++ .+.++..-+..|.++.+| +.+++.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L-~~l~l~~~~~~~ 285 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPEL-AEVTTYGSTFND 285 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTC-CEEEEESSCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCC-CEEEeCCccccC
Confidence 855 66667778888888888888865 56566677777 67888888 455664556777888888 68888887765
Q ss_pred ----ccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccc
Q 040849 505 ----GTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP 580 (809)
Q Consensus 505 ----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 580 (809)
...+..|.++++|+.++|. |+++.....+|.+|++|+.++|..| ++...+.+|.++ +|+.+++++|.+....+
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 4566778888888888888 4577677778888888888888554 776777788888 88888888888877777
Q ss_pred cccccCC-CCCeEEccCCccc
Q 040849 581 KYFENFL-FLQNLNLSFNHFE 600 (809)
Q Consensus 581 ~~~~~l~-~L~~l~ls~N~l~ 600 (809)
..|..++ .++.+++..|.+.
T Consensus 363 ~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSCCCSCTTCCEEEECGGGHH
T ss_pred ccccCCCCCccEEEeCHHHHH
Confidence 7777774 6777777666543
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=151.71 Aligned_cols=112 Identities=41% Similarity=0.641 Sum_probs=98.7
Q ss_pred ccccccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeE
Q 040849 690 SVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKI 748 (809)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l 748 (809)
....+++.++....++|...+.||+|+||+||+|+..++ +.|||| +.++||||+++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~ 92 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADG---TLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 92 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSS---CCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCC
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCC---CEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccce
Confidence 455788899999999999999999999999999985433 379999 46889999999
Q ss_pred eeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 749 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++|.. ++..++|||||++|+|.++++.+......++|.++..|+.|+++||+|||
T Consensus 93 ~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH 148 (326)
T 3uim_A 93 RGFCMT-----PTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLH 148 (326)
T ss_dssp CEEECC-----SSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEec-----CCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999765 67789999999999999999876555566999999999999999999998
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-14 Score=151.81 Aligned_cols=108 Identities=38% Similarity=0.584 Sum_probs=92.1
Q ss_pred ccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeee
Q 040849 694 VSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~ 753 (809)
+++.++...+++|+..+.||+|+||+||+|+..+ ++.|||| +.++|||||++++++.
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~---~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~ 105 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD---GAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCD 105 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTT---CCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECC
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEECC---CCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEc
Confidence 4445556678899999999999999999999643 3389999 5789999999999976
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. ++..++|||||++|+|.+++.........++|.++..++.|+++||+|||
T Consensus 106 ~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH 156 (321)
T 2qkw_B 106 E-----RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH 156 (321)
T ss_dssp C-----TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc
Confidence 4 67899999999999999999866444456999999999999999999998
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=131.52 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=55.8
Q ss_pred EEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEccccc
Q 040849 103 VLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNN 182 (809)
Q Consensus 103 ~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 182 (809)
++|+++|.++. +|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 44455555542 343332 455555555555555555555555555555555555555444445555555555555555
Q ss_pred CcccCCccCCCCCCCCEEEcccCcccc
Q 040849 183 LSGQIPSSFGNLSSLEVLSASANQFVG 209 (809)
Q Consensus 183 l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 209 (809)
+++..+..|.++++|++|+|++|.++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 554444455555555555555555543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-12 Score=139.68 Aligned_cols=67 Identities=6% Similarity=-0.001 Sum_probs=36.7
Q ss_pred CcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccC
Q 040849 183 LSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251 (809)
Q Consensus 183 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 251 (809)
++.....+|.++.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++......|.++++|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 34344456777777777777533 55455556666666666666533 333333445555555544433
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-14 Score=154.33 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=88.7
Q ss_pred HHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeee
Q 040849 696 YQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSC 752 (809)
Q Consensus 696 ~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~ 752 (809)
+.++....++|+..++||+|+||+||+|+....+. .||+| +.++|||||++++++
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~--~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~ 138 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRK--VYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF 138 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCc--EEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 34455667889999999999999999999766544 89999 357899999999997
Q ss_pred eccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 753 ASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 753 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.. ++..|+|||||++|+|.+++++. .+++..+..++.||+.||+|||
T Consensus 139 ~~-----~~~~~lV~E~~~gg~L~~~l~~~-----~~~e~~~~~~~~qi~~aL~~LH 185 (410)
T 3v8s_A 139 QD-----DRYLYMVMEYMPGGDLVNLMSNY-----DVPEKWARFYTAEVVLALDAIH 185 (410)
T ss_dssp EC-----SSEEEEEECCCTTEEHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EE-----CCEEEEEEeCCCCCcHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 65 78899999999999999999743 4899999999999999999998
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=145.79 Aligned_cols=97 Identities=25% Similarity=0.423 Sum_probs=85.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.++|...+.||+|+||+||+|+....+. .||+| +.++|||||++++++.. ++.
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~--~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~ 81 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGE--VMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-----DKR 81 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCC--EEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCc--EEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEec-----CCe
Confidence 3578899999999999999999765544 89999 57899999999999876 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.++++... ..++|.++..|+.|+++||+|||
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~al~~lH 125 (310)
T 3s95_A 82 LNFITEYIKGGTLRGIIKSMD---SQYPWSQRVSFAKDIASGMAYLH 125 (310)
T ss_dssp EEEEEECCTTCBHHHHHHHCC---TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCCcHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998532 45899999999999999999998
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=129.39 Aligned_cols=103 Identities=27% Similarity=0.372 Sum_probs=54.4
Q ss_pred EEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEccccc
Q 040849 103 VLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNN 182 (809)
Q Consensus 103 ~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 182 (809)
.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4455555553 3444332 455555555555555555555555555555555555554444445555555555555555
Q ss_pred CcccCCccCCCCCCCCEEEcccCccc
Q 040849 183 LSGQIPSSFGNLSSLEVLSASANQFV 208 (809)
Q Consensus 183 l~~~~p~~~~~l~~L~~L~Ls~N~l~ 208 (809)
+++..+..|..+++|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55444444555555555555555554
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=145.30 Aligned_cols=106 Identities=28% Similarity=0.288 Sum_probs=89.0
Q ss_pred ccccHHHHHHhccc----------ccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCC
Q 040849 692 LRVSYQNLFKATDG----------FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIR 741 (809)
Q Consensus 692 ~~~~~~~~~~~~~~----------~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~ 741 (809)
..++++++..+++. |+..+.||+|+||+||+|+....+. .|||| +.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~--~vavK~~~~~~~~~~~~~~~E~~~l~~l~ 100 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGR--QVAVKMMDLRKQQRRELLFNEVVIMRDYQ 100 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEETTTCCSHHHHHHHHHHHTTCC
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCc--EEEEEEEeccchhHHHHHHHHHHHHHhCC
Confidence 34666676666543 6677899999999999999765444 89999 5789
Q ss_pred CcceeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 742 H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++++++.. ++..++||||+++|+|.+++... .++|.++..++.|+++||+|||
T Consensus 101 h~niv~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~-----~l~~~~~~~i~~qi~~~L~~LH 158 (321)
T 2c30_A 101 HFNVVEMYKSYLV-----GEELWVLMEFLQGGALTDIVSQV-----RLNEEQIATVCEAVLQALAYLH 158 (321)
T ss_dssp CTTBCCEEEEEEE-----TTEEEEEECCCCSCBHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEEEE-----CCEEEEEEecCCCCCHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 67899999999999999998743 4899999999999999999998
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-14 Score=152.70 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=90.9
Q ss_pred ccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEee
Q 040849 694 VSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIIT 750 (809)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~ 750 (809)
+.+.+.....++|+..+.||+|+||+||+|+....+. .|||| ..++|||||++++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~--~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~ 128 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQ--VYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHF 128 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCC--EEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEE
Confidence 3445556667899999999999999999999765444 89999 3578999999999
Q ss_pred eeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 751 SCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 751 ~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.. ++..|+|||||++|+|.+++++.+ ..+++..+..|+.||+.||+|||
T Consensus 129 ~~~~-----~~~~~lVmE~~~gg~L~~~l~~~~---~~l~~~~~~~~~~qi~~aL~~LH 179 (412)
T 2vd5_A 129 AFQD-----ENYLYLVMEYYVGGDLLTLLSKFG---ERIPAEMARFYLAEIVMAIDSVH 179 (412)
T ss_dssp EEEC-----SSEEEEEECCCCSCBHHHHHHHHS---SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEee-----CCEEEEEEcCCCCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9765 788999999999999999997532 35899999999999999999998
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=140.82 Aligned_cols=98 Identities=23% Similarity=0.376 Sum_probs=84.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|...+.||+|+||+||+|+.. +. .|||| +.++|||||++++++... +.
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~--~~--~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~ 81 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ--GN--DIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSP---PA 81 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET--TE--EEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTT---TS
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC--Ce--eEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccC---CC
Confidence 356889999999999999999974 23 79999 567999999999998651 13
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.++++... ...+++.++..|+.|+++||+|||
T Consensus 82 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH 128 (271)
T 3kmu_A 82 PHPTLITHWMPYGSLYNVLHEGT--NFVVDQSQAVKFALDMARGMAFLH 128 (271)
T ss_dssp SSCEEEEECCTTCBHHHHHHSCS--SCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEeeecccCCCcHHHHHhhcc--cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999998643 235899999999999999999999
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=144.75 Aligned_cols=97 Identities=23% Similarity=0.354 Sum_probs=85.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|...+.||+|+||+||+|+....+ +.||+| +.++|||||++++++.. .+..
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~--~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----~~~~ 76 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSK--KTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES-----MEEL 76 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-----TTEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCC--cEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEec-----CCEE
Confidence 467899999999999999999976544 489999 56899999999999765 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|||||++|+|.+++... ...+++.++..++.|+++||+|||
T Consensus 77 ~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH 119 (321)
T 1tki_A 77 VMIFEFISGLDIFERINTS---AFELNEREIVSYVHQVCEALQFLH 119 (321)
T ss_dssp EEEECCCCCCBHHHHHTSS---SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999754 245899999999999999999998
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=143.75 Aligned_cols=110 Identities=35% Similarity=0.506 Sum_probs=94.3
Q ss_pred ccccccHHHHHHhccccccc------ceeccCCceeEEEEEECCCCceeEEEEe------------------------cC
Q 040849 690 SVLRVSYQNLFKATDGFSLE------NLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RS 739 (809)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~------~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~ 739 (809)
....+++.++..++.+|... +.||+|+||+||+|+.. +. .|||| +.
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~--~~--~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~ 86 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN--NT--TVAVKKLAAMVDITTEELKQQFDQEIKVMAK 86 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESS--SC--EEEEEEECCCTTSCTTTHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEEC--Cc--eEEEEEEecccCcchHHHHHHHHHHHHHHHh
Confidence 34568899999999998877 89999999999999953 23 79998 46
Q ss_pred CCCcceeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 740 l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++++++.. ++..++||||+++|+|.+++.... ....++|..+..++.|+++||+|||
T Consensus 87 l~h~~i~~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH 150 (307)
T 2nru_A 87 CQHENLVELLGFSSD-----GDDLCLVYVYMPNGSLLDRLSCLD-GTPPLSWHMRCKIAQGAANGINFLH 150 (307)
T ss_dssp CCCTTBCCEEEEECS-----SSSCEEEEECCTTCBHHHHHHTGG-GCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEec-----CCceEEEEEecCCCcHHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 789999999999765 677999999999999999997543 2346899999999999999999998
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=143.38 Aligned_cols=95 Identities=24% Similarity=0.355 Sum_probs=84.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.+.|+..+.||+|+||+||+|..... ++.|||| +.++|||||++++++.. ++.
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~ 91 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVAT--GQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDE 91 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTT--CCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCC--CcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEE-----CCE
Confidence 45799999999999999999996544 3489999 46899999999999776 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.+++... .+++.++..++.|+++||+|||
T Consensus 92 ~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH 133 (297)
T 3fxz_A 92 LWVVMEYLAGGSLTDVVTET-----CMDEGQIAAVCRECLQALEFLH 133 (297)
T ss_dssp EEEEEECCTTCBHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999743 4899999999999999999998
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-13 Score=146.12 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=84.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeeccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
.+.|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~--~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-- 86 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGL--EYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYEN-- 86 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEEC--
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCC--EEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEe--
Confidence 4568999999999999999999765444 89999 46789999999999765
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++... ..+++.++..++.||+.||+|||
T Consensus 87 ---~~~~~lv~e~~~gg~L~~~l~~~----~~l~~~~~~~i~~qi~~aL~~LH 132 (361)
T 2yab_A 87 ---RTDVVLILELVSGGELFDFLAQK----ESLSEEEATSFIKQILDGVNYLH 132 (361)
T ss_dssp ---SSEEEEEEECCCSCBHHHHHTTC----SCCBHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEEcCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 45899999999999999999998
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-14 Score=149.30 Aligned_cols=99 Identities=24% Similarity=0.345 Sum_probs=85.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
+.|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~---- 97 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQ--QFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSS---- 97 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEE----
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCC--EEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEe----
Confidence 468999999999999999999765444 89999 35789999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++..+......+++..+..++.||++||+|||
T Consensus 98 -~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH 147 (351)
T 3c0i_A 98 -DGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH 147 (351)
T ss_dssp -TTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999888654323346899999999999999999998
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-14 Score=152.23 Aligned_cols=101 Identities=29% Similarity=0.514 Sum_probs=87.3
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeecccc
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
+....++|...+.||+|+||+||+|+....+. .|||| +.++|||||+++++|..
T Consensus 109 ~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~--- 183 (377)
T 3cbl_A 109 WVLNHEDLVLGEQIGRGNFGEVFSGRLRADNT--LVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ--- 183 (377)
T ss_dssp TBCCGGGEEEEEEEEEETTEEEEEEEETTTCC--EEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECS---
T ss_pred cEEchHHeEEeeEeccCCCCeEEEEEEecCCe--EEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEec---
Confidence 33445678999999999999999999875544 89999 57899999999999865
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.++++.. ...+++.++..++.|||+||+|||
T Consensus 184 --~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~LH 230 (377)
T 3cbl_A 184 --KQPIYIVMELVQGGDFLTFLRTE---GARLRVKTLLQMVGDAAAGMEYLE 230 (377)
T ss_dssp --SSSCEEEEECCTTCBHHHHHHHH---GGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcEEEEEcCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999743 235899999999999999999998
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=145.16 Aligned_cols=96 Identities=22% Similarity=0.380 Sum_probs=84.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.++|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ++
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----~~ 78 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEE--AVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-----GN 78 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCc--EEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEec-----CC
Confidence 3579999999999999999999765444 89999 46799999999999765 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||++|+|.++++.. ..+++.++..|+.|+++||+|||
T Consensus 79 ~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH 122 (323)
T 3tki_A 79 IQYLFLEYCSGGELFDRIEPD----IGMPEPDAQRFFHQLMAGVVYLH 122 (323)
T ss_dssp EEEEEEECCTTEEGGGGSBTT----TBCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCcHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999744 35899999999999999999998
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=146.68 Aligned_cols=97 Identities=23% Similarity=0.317 Sum_probs=85.4
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
..++|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~----- 85 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGR--EVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIET----- 85 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCC--EEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----
Confidence 35679999999999999999999755444 89999 46799999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++..+ ..+++.++..++.|+++||+|||
T Consensus 86 ~~~~~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~al~~lH 131 (328)
T 3fe3_A 86 EKTLYLIMEYASGGEVFDYLVAH----GRMKEKEARSKFRQIVSAVQYCH 131 (328)
T ss_dssp SSEEEEEECCCTTCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 34899999999999999999998
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=144.05 Aligned_cols=96 Identities=22% Similarity=0.325 Sum_probs=84.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+.||+|+||+||+|+....+. .||+| +.++|||||++++++..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~----- 77 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGR--YYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD----- 77 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-----
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCC--EEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEe-----
Confidence 3578999999999999999999765444 89999 46799999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.++++.. ..+++..+..++.||+.||+|||
T Consensus 78 ~~~~~lv~e~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 123 (318)
T 1fot_A 78 AQQIFMIMDYIEGGELFSLLRKS----QRFPNPVAKFYAAEVCLALEYLH 123 (318)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHT----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999753 35899999999999999999998
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=148.74 Aligned_cols=98 Identities=29% Similarity=0.508 Sum_probs=83.9
Q ss_pred ccccccceeccCCceeEEEEEECCC-CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+.... ..++.|||| +.++|||||++++++.. ++
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~ 119 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK-----SK 119 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----SS
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-----CC
Confidence 5789999999999999999986521 234479999 57899999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||++|+|.++++..+ ..+++.++..|+.||++||+|||
T Consensus 120 ~~~lv~e~~~~~sL~~~l~~~~---~~~~~~~~~~i~~qi~~aL~~LH 164 (373)
T 2qol_A 120 PVMIVTEYMENGSLDSFLRKHD---AQFTVIQLVGMLRGIASGMKYLS 164 (373)
T ss_dssp SCEEEEECCTTCBHHHHHHTTT---TCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCcHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999998542 45899999999999999999998
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-13 Score=145.26 Aligned_cols=96 Identities=26% Similarity=0.340 Sum_probs=84.7
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+.||+|+||+||+|+....+. .|||| +.++||||+++++++..
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~----- 76 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGR--YYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT----- 76 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-----
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCC--EEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEe-----
Confidence 3579999999999999999999765444 89999 46899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.+++.+. ..+++.++..++.||+.||+|||
T Consensus 77 ~~~~~lv~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 122 (337)
T 1o6l_A 77 HDRLCFVMEYANGGELFFHLSRE----RVFTEERARFYGAEIVSALEYLH 122 (337)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 35899999999999999999998
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=146.62 Aligned_cols=96 Identities=30% Similarity=0.403 Sum_probs=84.2
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~--~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~---- 110 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEV--FYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT---- 110 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCC--EEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEEC----
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCC--EEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEe----
Confidence 4579999999999999999999765544 89999 34689999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.+++++. ..+++.++..++.||+.||+|||
T Consensus 111 -~~~~~lv~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 156 (373)
T 2r5t_A 111 -ADKLYFVLDYINGGELFYHLQRE----RCFLEPRARFYAAEIASALGYLH 156 (373)
T ss_dssp -SSEEEEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 35889999999999999999998
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-13 Score=143.63 Aligned_cols=98 Identities=28% Similarity=0.363 Sum_probs=83.3
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
..++|+..+.||+|+||+||+|+..+ +.|||| +.++|||||++++++.... .....
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~~~ 96 (322)
T 3soc_A 22 QSMPLQLLEVKARGRFGCVWKAQLLN----EYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGT-SVDVD 96 (322)
T ss_dssp TTEEEEEEEEEECSTTCEEEEEEETT----EEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEE
T ss_pred chhhchhhheecccCceEEEEEEECC----CEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCC-CCCce
Confidence 34679999999999999999998652 389999 4689999999999987521 11345
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.++++.. .++|.++..|+.|+++||+|||
T Consensus 97 ~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~i~~qi~~al~~LH 138 (322)
T 3soc_A 97 LWLITAFHEKGSLSDFLKAN-----VVSWNELCHIAETMARGLAYLH 138 (322)
T ss_dssp EEEEEECCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCCCCHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999743 3899999999999999999999
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=146.82 Aligned_cols=102 Identities=24% Similarity=0.469 Sum_probs=85.3
Q ss_pred cccccccceeccCCceeEEEEEECC-----CCceeEEEEe---------------------cCC-CCcceeeEeeeeecc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNH-----DDHETLVAVK---------------------RSI-RHRNLVKIITSCASV 755 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~-----~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~ 755 (809)
.++|...+.||+|+||+||+|+... ...+..|||| +.+ +|||||+++++|..
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~- 158 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ- 158 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS-
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc-
Confidence 4678999999999999999998642 1244579999 345 89999999999765
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.++++..+. ....+++.++..++.||++||+|||
T Consensus 159 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 220 (370)
T 2psq_A 159 ----DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA 220 (370)
T ss_dssp ----SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999985431 1245899999999999999999998
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-13 Score=140.46 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=80.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+.|+..+.||+|+||.||+|+.... ++.|||| +.++|||||++++++.. +
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~ 103 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTAL--DRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHT-----R 103 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTT--TEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----T
T ss_pred CcEEEEEEEcccCCeEEEEEEecCC--CceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEE-----C
Confidence 5699999999999999999997654 3489999 47899999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.++++.. ....++.+|+.|+++||+|||
T Consensus 104 ~~~~lv~e~~~g~~L~~~l~~~------~~~~~~~~i~~ql~~aL~~lH 146 (286)
T 3uqc_A 104 AGGLVVAEWIRGGSLQEVADTS------PSPVGAIRAMQSLAAAADAAH 146 (286)
T ss_dssp TEEEEEEECCCEEEHHHHHTTC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCHHHHHhcC------CChHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999532 355678999999999999998
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=143.57 Aligned_cols=98 Identities=26% Similarity=0.468 Sum_probs=84.9
Q ss_pred ccccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+.|...+.||+|+||+||+|+....+ .+..|||| +.++|||||++++++.. ++
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 123 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTR-----GR 123 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECG-----GG
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----CC
Confidence 56888999999999999999976432 33469999 57899999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||++|+|.++++... ..+++.++..|+.|+++||+|||
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~~L~~LH 168 (325)
T 3kul_A 124 LAMIVTEYMENGSLDTFLRTHD---GQFTIMQLVGMLRGVGAGMRYLS 168 (325)
T ss_dssp CCEEEEECCTTCBHHHHHHTTT---TCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEeeCCCCCcHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999997542 45899999999999999999998
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-13 Score=148.39 Aligned_cols=102 Identities=29% Similarity=0.498 Sum_probs=85.4
Q ss_pred cccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|...+.||+|+||+||+|++.. ...++.|||| +.++|||||++++++..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~---- 145 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ---- 145 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEec----
Confidence 3578899999999999999999653 2244589999 46799999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCC---CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKP---EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~---~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...++|||||++|+|.++++..+ .....+++.+++.|+.||++||+|||
T Consensus 146 -~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 198 (367)
T 3l9p_A 146 -SLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 198 (367)
T ss_dssp -SSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999997543 12345899999999999999999998
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=146.21 Aligned_cols=96 Identities=26% Similarity=0.351 Sum_probs=85.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||+||+|+....+. .||+| +.++|||||++++++..
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~--~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~----- 86 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKK--MYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQD----- 86 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCC--EEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----
Confidence 3579999999999999999999765544 89999 46899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.++++.. ..+++.++..|+.||+.||+|||
T Consensus 87 ~~~~~lv~e~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~LH 132 (384)
T 4fr4_A 87 EEDMFMVVDLLLGGDLRYHLQQN----VHFKEETVKLFICELVMALDYLQ 132 (384)
T ss_dssp SSEEEEEECCCTTEEHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999853 45899999999999999999998
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=145.21 Aligned_cols=98 Identities=21% Similarity=0.399 Sum_probs=84.4
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
...++|...+.||+|+||+||+|+....+ +.|||| ...+|||||++++++..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~-- 89 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTN--QFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT-- 89 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTT--EEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC--
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCC--CEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe--
Confidence 34578999999999999999999976544 489999 12489999999999765
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.++++.. ..+++.++..++.||+.||+|||
T Consensus 90 ---~~~~~lv~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 135 (345)
T 1xjd_A 90 ---KENLFFVMEYLNGGDLMYHIQSC----HKFDLSRATFYAAEIILGLQFLH 135 (345)
T ss_dssp ---SSEEEEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 35899999999999999999998
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-13 Score=141.34 Aligned_cols=95 Identities=19% Similarity=0.352 Sum_probs=84.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+.|+..+.||+|+||.||+|+....+. .||+| +.++||||+++++++.. +
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~ 83 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNI--KVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEE-----D 83 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCS--EEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEEC-----S
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCC--eEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeee-----C
Confidence 568999999999999999999665544 89999 46899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 84 ~~~~lv~e~~~g~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 128 (294)
T 4eqm_A 84 DCYYLVMEYIEGPTLSEYIESH----GPLSVDTAINFTNQILDGIKHAH 128 (294)
T ss_dssp SEEEEEEECCCSCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999743 35899999999999999999998
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-13 Score=143.47 Aligned_cols=100 Identities=25% Similarity=0.398 Sum_probs=85.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCC-CCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSI-RHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l-~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+.||+|+||+||+|+....+. .|||| ..+ +||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~----- 82 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGC--IYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAE----- 82 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE-----
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCc--eEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec-----
Confidence 3568999999999999999999765444 89999 233 89999999999876
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.+++.........+++.++..|+.|+++||+|||
T Consensus 83 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH 132 (289)
T 1x8b_A 83 DDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH 132 (289)
T ss_dssp TTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999754222245899999999999999999998
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=145.19 Aligned_cols=105 Identities=30% Similarity=0.467 Sum_probs=88.2
Q ss_pred HHhcccccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCCCCcceeeEeeeeecc
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSIRHRNLVKIITSCASV 755 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l~H~niv~l~~~~~~~ 755 (809)
....++|+..+.||+|+||+||+|+.... ..++.|||| +.++||||+++++++..
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~- 121 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV- 121 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-
Confidence 34467899999999999999999997642 244689999 57899999999999765
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCCC--------------------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPEA--------------------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~--------------------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.++++..... ...+++.+++.|+.||++||+|||
T Consensus 122 ----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH 191 (343)
T 1luf_A 122 ----GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS 191 (343)
T ss_dssp ----SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999754211 256899999999999999999998
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-13 Score=146.36 Aligned_cols=112 Identities=23% Similarity=0.322 Sum_probs=90.7
Q ss_pred ccHHHHHHhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCC-CCcceeeE
Q 040849 694 VSYQNLFKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSI-RHRNLVKI 748 (809)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l-~H~niv~l 748 (809)
+...++....++|...+.||+|+||.||+|++.. ...++.|||| +.+ +|||||++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 3445666778899999999999999999998542 2345689999 234 79999999
Q ss_pred eeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCC-------------------------------------------
Q 040849 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEA------------------------------------------- 785 (809)
Q Consensus 749 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~------------------------------------------- 785 (809)
+++|.. .+...++|||||++|+|.++++.+...
T Consensus 92 ~~~~~~----~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T 3vhe_A 92 LGACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGF 167 (359)
T ss_dssp EEEECS----TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------
T ss_pred eeeeec----CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccc
Confidence 999865 245589999999999999999865321
Q ss_pred -------------------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 786 -------------------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 786 -------------------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...+++.++..|+.|+++||+|||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH 210 (359)
T 3vhe_A 168 VEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA 210 (359)
T ss_dssp ----------------CTTTTCBCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH
Confidence 122899999999999999999998
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-13 Score=140.98 Aligned_cols=97 Identities=28% Similarity=0.419 Sum_probs=82.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|+..+.||+|+||+||+|+.. ++.|||| ..++||||+++++++... ..+....
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~~~ 81 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSWQ----GENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTS-RHSSTQL 81 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEET----TEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEEC----CEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCcee
Confidence 457999999999999999999963 2389999 238999999999987652 2234668
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|||||++|+|.++++. ..+++.++..|+.|+++||+|||
T Consensus 82 ~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~i~~~i~~~l~~lH 122 (301)
T 3q4u_A 82 WLITHYHEMGSLYDYLQL-----TTLDTVSCLRIVLSIASGLAHLH 122 (301)
T ss_dssp EEEECCCTTCBHHHHHTT-----CCBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEehhhccCCCHHHHHhh-----cccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999964 34899999999999999999998
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-13 Score=143.47 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=84.7
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.+.|+..+.||+|+||+||+|+....+. .|||| ++++|||||++++++.. ++..+
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~--~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~ 124 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQK--PYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFET-----PTEIS 124 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEC----------CHHHHHCCCTTBCCEEEEEEC-----SSEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCc--EEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEec-----CCeEE
Confidence 4568899999999999999999765444 89999 46789999999999765 67899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.+++..+ ..+++.++..++.|+++||+|||
T Consensus 125 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~L~~LH 165 (349)
T 2w4o_A 125 LVLELVTGGELFDRIVEK----GYYSERDAADAVKQILEAVAYLH 165 (349)
T ss_dssp EEECCCCSCBHHHHHTTC----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999754 35899999999999999999998
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=146.04 Aligned_cols=96 Identities=26% Similarity=0.337 Sum_probs=85.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ++..
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~~ 91 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKE--LVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILT-----PTHL 91 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCC--EEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SSEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCc--EEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEee-----CCEE
Confidence 4579999999999999999999765444 89999 46899999999999765 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|||||++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 92 ~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~ql~~~L~~LH 133 (361)
T 3uc3_A 92 AIIMEYASGGELYERICNA----GRFSEDEARFFFQQLLSGVSYCH 133 (361)
T ss_dssp EEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999743 35899999999999999999998
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=145.19 Aligned_cols=96 Identities=21% Similarity=0.387 Sum_probs=84.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||.||+|.....+. .|||| +.++|||||++++++.. +
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~ 100 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGL--EFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-----E 100 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----S
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----C
Confidence 4579999999999999999999765444 89999 45899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.+++..+ ..+++.++..++.||++||+|||
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~al~~lH 145 (362)
T 2bdw_A 101 SFHYLVFDLVTGGELFEDIVAR----EFYSEADASHCIQQILESIAYCH 145 (362)
T ss_dssp SEEEEEECCCCSCBHHHHHTTC----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999754 45899999999999999999998
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-13 Score=144.59 Aligned_cols=97 Identities=16% Similarity=0.317 Sum_probs=85.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.+.|+..+.||+|+||+||+|.....+. .||+| +.++|||||++++++.. +..
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~--~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~ 122 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGR--VFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-----KYE 122 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-----SSE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCC--EEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEe-----CCE
Confidence 3579999999999999999999765444 89999 57899999999999765 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.+++... ...+++.++..++.||++||+|||
T Consensus 123 ~~lv~E~~~gg~L~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH 166 (387)
T 1kob_A 123 MVLILEFLSGGELFDRIAAE---DYKMSEAEVINYMRQACEGLKHMH 166 (387)
T ss_dssp EEEEEECCCCCBHHHHTTCT---TCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 245899999999999999999998
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=143.67 Aligned_cols=96 Identities=23% Similarity=0.383 Sum_probs=83.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
.++|+..+.||+|+||+||+|+....+ +.|||| +..+|||||++++++.. ++..|+
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~-----~~~~~l 93 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATN--MEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDD-----GKYVYV 93 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEEC-----SSEEEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCC--CEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEc-----CCEEEE
Confidence 457999999999999999999976544 489999 12379999999999765 788999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|.+++..+ ..+++.++..++.||++||+|||
T Consensus 94 v~E~~~gg~L~~~i~~~----~~~~~~~~~~~~~qi~~al~~lH 133 (342)
T 2qr7_A 94 VTELMKGGELLDKILRQ----KFFSEREASAVLFTITKTVEYLH 133 (342)
T ss_dssp EECCCCSCBHHHHHHTC----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999754 35899999999999999999998
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-13 Score=155.95 Aligned_cols=101 Identities=28% Similarity=0.525 Sum_probs=87.1
Q ss_pred HHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
....++|+..+.||+|+||+||+|++...+ +.|||| ++++|||||+++++|.. +
T Consensus 216 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~--~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-----~ 288 (495)
T 1opk_A 216 EMERTDITMKHKLGGGQYGEVYEGVWKKYS--LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----E 288 (495)
T ss_dssp BCCGGGEEEEEESGGGTTSSEEEEEEGGGT--EEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----S
T ss_pred ccCHHHceeeeEecCCCCeEEEEEEEcCCC--eEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEec-----C
Confidence 344567889999999999999999987543 489999 46899999999999865 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.++++... ...+++..+..|+.|||+||+|||
T Consensus 289 ~~~~lv~E~~~~g~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~L~~LH 335 (495)
T 1opk_A 289 PPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE 335 (495)
T ss_dssp SSCEEEEECCTTCBHHHHHHHSC--TTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEccCCCCHHHHHHhcC--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999997542 245899999999999999999998
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-13 Score=143.03 Aligned_cols=103 Identities=19% Similarity=0.367 Sum_probs=83.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeecccc-----
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDF----- 757 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~----- 757 (809)
++|+..+.||+|+||+||+|+....+. .|||| ++++|||||++++++.....
T Consensus 6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~--~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 6 TDFEPIQCMGRGGFGVVFEAKNKVDDC--NYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHEEEEEEEECC-CSEEEEEEETTTCC--EEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hcCceeeEecCCCCeEEEEEEEcCCCc--EEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 568899999999999999999765444 89999 57899999999998754210
Q ss_pred -----------------------------------------------CCCceEEEEEeccCCCChhhhhcCCCCCCCCCC
Q 040849 758 -----------------------------------------------QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSN 790 (809)
Q Consensus 758 -----------------------------------------------~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~ 790 (809)
......++|||||++|+|.++++.+. .....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~ 162 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRC-SLEDRE 162 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCC-SGGGSC
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhccc-Cccchh
Confidence 11224899999999999999998654 233467
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q 040849 791 LLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 791 ~~~~~~i~~~ia~gl~yLH 809 (809)
+..+..++.|+++||+|||
T Consensus 163 ~~~~~~i~~qi~~aL~~LH 181 (332)
T 3qd2_B 163 HGVCLHIFIQIAEAVEFLH 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-13 Score=144.62 Aligned_cols=97 Identities=28% Similarity=0.385 Sum_probs=83.7
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCC-CCcceeeEeeeeecccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSI-RHRNLVKIITSCASVDF 757 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l-~H~niv~l~~~~~~~~~ 757 (809)
..++|+..+.||+|+||+||+|+....+. .|||| +.+ +|||||++++++..
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~--~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~--- 95 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGD--LYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQT--- 95 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEEC---
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCC--EEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEe---
Confidence 34689999999999999999999765544 89999 123 79999999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++++. ..+++.++..|+.||+.||+|||
T Consensus 96 --~~~~~lv~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 141 (353)
T 3txo_A 96 --PDRLFFVMEFVNGGDLMFHIQKS----RRFDEARARFYAAEIISALMFLH 141 (353)
T ss_dssp --SSEEEEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999753 35899999999999999999998
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-13 Score=137.62 Aligned_cols=96 Identities=28% Similarity=0.472 Sum_probs=84.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|+..+.||+|+||+||+|+..++ . .||+| ++++||||+++++++.. ++..
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~-~--~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 80 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNK-D--KVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-----QAPI 80 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTT-E--EEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-----SSSE
T ss_pred hhhceeeheecCCCccEEEEEEecCC-C--eEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEec-----CCce
Confidence 45788999999999999999997643 3 69999 57899999999999765 6779
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.++++... ..+++.++..++.|+++||+|||
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~lH 123 (269)
T 4hcu_A 81 CLVFEFMEHGCLSDYLRTQR---GLFAAETLLGMCLDVCEGMAYLE 123 (269)
T ss_dssp EEEEECCTTCBHHHHHHTTT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHhcC---cccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997543 45899999999999999999998
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-13 Score=146.62 Aligned_cols=96 Identities=24% Similarity=0.355 Sum_probs=84.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|+..++||+|+||+||+|+....+. .|||| +..+|||||++++++..
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~--~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~---- 124 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDR--IYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT---- 124 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTE--EEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEEC----
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCC--EEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEE----
Confidence 4679999999999999999999776544 89999 12389999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++++. ..+++.++..|+.||+.||+|||
T Consensus 125 -~~~~~lV~E~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~LH 170 (396)
T 4dc2_A 125 -ESRLFFVIEYVNGGDLMFHMQRQ----RKLPEEHARFYSAEISLALNYLH 170 (396)
T ss_dssp -SSEEEEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEEcCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999753 35899999999999999999998
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-13 Score=142.04 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=85.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+.|...+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. .+.
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~ 94 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGL--ERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFED-----YHN 94 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSE
T ss_pred hheeecceeccCCCeEEEEEEEccCCc--eEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheec-----CCe
Confidence 468899999999999999999765544 89999 57899999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.+++.........+++..+..|+.|+++||+|||
T Consensus 95 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH 141 (285)
T 3is5_A 95 MYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH 141 (285)
T ss_dssp EEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998643222356899999999999999999998
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=142.14 Aligned_cols=101 Identities=28% Similarity=0.496 Sum_probs=84.8
Q ss_pred cccccccceeccCCceeEEEEEEC--CCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILN--HDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~--~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||+||+|++. +...++.|||| +.++||||+++++++... +.
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~ 85 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---GR 85 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHH---HH
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---CC
Confidence 356889999999999999999864 22345689999 578999999999998642 13
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++|||||++|+|.++++..+ ..+++.++..++.|+++||+|||
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~qi~~~l~~lH 131 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGMEYLG 131 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCG---GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCCCCHHHHHHhcc---cccCHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999997542 35899999999999999999998
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-13 Score=142.07 Aligned_cols=100 Identities=24% Similarity=0.377 Sum_probs=85.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+.|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. .+...
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~ 83 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGD--LFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTRH 83 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTCC
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCc--EEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeec---CCCce
Confidence 468899999999999999999765444 89999 46799999999998765 22447
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.++++... ....+++.++..|+.|+++||+|||
T Consensus 84 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~i~~qi~~~L~~LH 129 (319)
T 4euu_A 84 KVLIMEFCPCGSLYTVLEEPS-NAYGLPESEFLIVLRDVVGGMNHLR 129 (319)
T ss_dssp EEEEEECCTTCBHHHHHHSGG-GTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998653 2234899999999999999999998
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-13 Score=143.59 Aligned_cols=95 Identities=24% Similarity=0.304 Sum_probs=84.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. +
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~ 113 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGN--HYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-----N 113 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----S
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCC--EEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-----C
Confidence 579999999999999999999765444 89999 47899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.+++++. ..+++.++..++.||+.||+|||
T Consensus 114 ~~~~lv~e~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 158 (350)
T 1rdq_E 114 SNLYMVMEYVAGGEMFSHLRRI----GRFSEPHARFYAAQIVLTFEYLH 158 (350)
T ss_dssp SEEEEEEECCTTCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999753 34899999999999999999998
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-13 Score=141.91 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=83.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeecccc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
+.|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--- 85 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGL--QYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN--- 85 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCC--EEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCc--EEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEe---
Confidence 458899999999999999999765444 89998 35789999999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...++|||||++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 86 --~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~al~~lH 131 (326)
T 2y0a_A 86 --KTDVILILELVAGGELFDFLAEK----ESLTEEEATEFLKQILNGVYYLH 131 (326)
T ss_dssp --SSEEEEEEECCCSCBHHHHHTTS----SCCBHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEEcCCCCCHHHHHHhc----CCcCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 45899999999999999999998
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=145.44 Aligned_cols=101 Identities=34% Similarity=0.475 Sum_probs=85.2
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~ 756 (809)
+....++|+..+.||+|+||+||+|+..+ . .|||| ++++|||||++++++..
T Consensus 32 ~~i~~~~y~i~~~lG~G~~g~V~~~~~~~--~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-- 105 (309)
T 3p86_A 32 MDIPWCDLNIKEKIGAGSFGTVHRAEWHG--S--DVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ-- 105 (309)
T ss_dssp CBCCGGGEEEEEEEEECSSEEEEEEEETT--E--EEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred ccCChhHceeeeEeecCCCeEEEEEEECC--C--cEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE--
Confidence 33445679999999999999999998632 3 79999 46899999999999765
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.++++... ....+++.++..++.|+++||+|||
T Consensus 106 ---~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~i~~qi~~aL~~LH 154 (309)
T 3p86_A 106 ---PPNLSIVTEYLSRGSLYRLLHKSG-AREQLDERRRLSMAYDVAKGMNYLH 154 (309)
T ss_dssp ---TTCCEEEEECCTTCBHHHHHHSTT-HHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEecCCCCcHHHHHhhcC-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999998542 1224899999999999999999998
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-13 Score=144.04 Aligned_cols=95 Identities=25% Similarity=0.359 Sum_probs=83.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCC-CCcceeeEeeeeeccccCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSI-RHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l-~H~niv~l~~~~~~~~~~~ 759 (809)
++|+..+.||+|+||+||+|+....+ +.|||| +.+ +|||||++++++..
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~--~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~----- 81 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTD--RIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT----- 81 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----
T ss_pred hheEEEEEEEecCCeEEEEEEECCCC--CEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEe-----
Confidence 57899999999999999999976544 489999 233 89999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++++. ..+++.++..++.||+.||+|||
T Consensus 82 ~~~~~lv~e~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~LH 127 (345)
T 3a8x_A 82 ESRLFFVIEYVNGGDLMFHMQRQ----RKLPEEHARFYSAEISLALNYLH 127 (345)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 35899999999999999999998
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.38 E-value=6e-13 Score=149.76 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=87.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...++||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~--~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~----- 256 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGK--LYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFET----- 256 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCc--EEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEee-----
Confidence 3678899999999999999999765444 89999 46799999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.+++.........+++.++..|+.||+.||+|||
T Consensus 257 ~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH 306 (543)
T 3c4z_A 257 KTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH 306 (543)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999865433456999999999999999999998
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-13 Score=139.95 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=86.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||.||+|+....+. .||+| +.++||||+++++++... ++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~ 79 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGK--ILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR---TN 79 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEG---GG
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCc--EEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecC---CC
Confidence 4679999999999999999999765444 89999 468999999999987541 25
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++||||+++|+|.+++.........+++.++..++.|+++||+|||
T Consensus 80 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH 128 (279)
T 2w5a_A 80 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH 128 (279)
T ss_dssp TEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999754333455899999999999999999998
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7e-13 Score=149.56 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=85.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~--~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~----- 255 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGK--MYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET----- 255 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCC--EEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEee-----
Confidence 4679999999999999999999765444 89999 46799999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.++++..+ ...+++.++..|+.||+.||+|||
T Consensus 256 ~~~l~lVmEy~~gg~L~~~l~~~~--~~~l~e~~~~~i~~qIl~aL~yLH 303 (576)
T 2acx_A 256 KDALCLVLTLMNGGDLKFHIYHMG--QAGFPEARAVFYAAEICCGLEDLH 303 (576)
T ss_dssp SSEEEEEECCCCSCBHHHHHHSSS--SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999998643 245899999999999999999998
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-13 Score=147.09 Aligned_cols=96 Identities=24% Similarity=0.409 Sum_probs=85.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~--~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~----- 87 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGH--KVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIST----- 87 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCC--EEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCC--EEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----
Confidence 3578999999999999999999765444 89999 47899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.+++... ..+++.++..++.||+.||+|||
T Consensus 88 ~~~~~lv~E~~~gg~L~~~l~~~----~~l~~~~~~~i~~qi~~aL~~LH 133 (476)
T 2y94_A 88 PSDIFMVMEYVSGGELFDYICKN----GRLDEKESRRLFQQILSGVDYCH 133 (476)
T ss_dssp SSEEEEEEECCSSEEHHHHTTSS----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999743 45899999999999999999998
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.9e-13 Score=141.57 Aligned_cols=98 Identities=37% Similarity=0.561 Sum_probs=83.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|+..+.||+|+||+||+|+..+ +.|||| ..++||||+++++++......+....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~----~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSLDE----RPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETT----EEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEECC----eEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 4679999999999999999998632 389999 35899999999987655444556678
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|||||++|+|.++++.+ ..+|.++..|+.||++||+|||
T Consensus 88 ~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~i~~qi~~~L~~LH 128 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLH-----TSDWVSSCRLAHSVTRGLAYLH 128 (336)
T ss_dssp EEEECCCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcHHHHHhhc-----ccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999754 2589999999999999999998
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-13 Score=144.82 Aligned_cols=98 Identities=24% Similarity=0.310 Sum_probs=86.0
Q ss_pred cccccccceeccC--CceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAG--SFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G--~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|+..+.||+| +||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~---- 97 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGE--YVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIA---- 97 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCC--EEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE----
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCC--EEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEE----
Confidence 3579999999999 999999999765444 89999 46899999999999876
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++.... ...+++.++..|+.||++||+|||
T Consensus 98 -~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~LH 145 (389)
T 3gni_B 98 -DNELWVVTSFMAYGSAKDLICTHF--MDGMNELAIAYILQGVLKALDYIH 145 (389)
T ss_dssp -TTEEEEEEECCTTCBHHHHHHHTC--TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEEccCCCCHHHHHhhhc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999997542 245899999999999999999998
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.1e-13 Score=136.52 Aligned_cols=97 Identities=24% Similarity=0.448 Sum_probs=85.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||.||+|+....+. .|||| +.++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 82 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGL--EVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFED----- 82 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEEC-----
T ss_pred cccceeeeeecCCCceEEEEEEEccCCc--eEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEcc-----
Confidence 4579999999999999999999755444 89999 46799999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++||||+++|+|.+++..+. ..+++.++..++.|+++||+|||
T Consensus 83 ~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~qi~~~l~~lH 129 (278)
T 3cok_A 83 SNYVYLVLEMCHNGEMNRYLKNRV---KPFSENEARHFMHQIITGMLYLH 129 (278)
T ss_dssp SSEEEEEEECCTTEEHHHHHHTCS---SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCCcHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998542 45899999999999999999998
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-13 Score=140.16 Aligned_cols=99 Identities=29% Similarity=0.521 Sum_probs=84.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCc-----eeEEEEe--------------------cCCCCcceeeEeeeeecccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDH-----ETLVAVK--------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~-----~~~vavK--------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
.++|...+.||+|+||+||+|+....+. ++.||+| +.++|||||++++++..
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--- 83 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVC--- 83 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC---
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe---
Confidence 3578899999999999999998664331 2479999 57899999999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.++++..+ ..+++.++..++.|+++||+|||
T Consensus 84 --~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~~L~~LH 130 (289)
T 4fvq_A 84 --GDENILVQEFVKFGSLDTYLKKNK---NCINILWKLEVAKQLAAAMHFLE 130 (289)
T ss_dssp --TTCCEEEEECCTTCBHHHHHHHTG---GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEECCCCCCHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999998542 34899999999999999999998
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=139.77 Aligned_cols=101 Identities=27% Similarity=0.521 Sum_probs=85.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCC-CCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSI-RHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|...+.||+|+||.||+|+....+....|||| +++ +||||+++++++.. ++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-----~~ 99 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-----RG 99 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE-----TT
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeee-----CC
Confidence 5688999999999999999997665443345888 466 89999999999865 77
Q ss_pred eEEEEEeccCCCChhhhhcCCC------------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKP------------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~------------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.++++..+ .....+++.+++.++.|+++||+|||
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 159 (327)
T 1fvr_A 100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 159 (327)
T ss_dssp EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998653 12346899999999999999999998
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-13 Score=139.84 Aligned_cols=101 Identities=26% Similarity=0.405 Sum_probs=83.7
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccC
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.+....++|+..+.||+|+||+||+|....+ +.|||| +.++||||+++++++..
T Consensus 18 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---- 90 (283)
T 3gen_A 18 SWEIDPKDLTFLKELGTGQFGVVKYGKWRGQ---YDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK---- 90 (283)
T ss_dssp TTBCCGGGEEEEEECC---CEEEEEEEETTT---EEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECS----
T ss_pred CccCCHHHHHhHhhcCCCCCceEEEEEEcCC---CeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEec----
Confidence 3334556899999999999999999987643 379999 57899999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++... ..+++.++..++.|+++||+|||
T Consensus 91 -~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~~l~~lH 137 (283)
T 3gen_A 91 -QRPIFIITEYMANGCLLNYLREMR---HRFQTQQLLEMCKDVCEAMEYLE 137 (283)
T ss_dssp -SSSEEEEECCCTTCBHHHHHHCGG---GCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCeEEEEeccCCCcHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999998532 45899999999999999999998
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-13 Score=143.26 Aligned_cols=95 Identities=25% Similarity=0.248 Sum_probs=82.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. .|||| +..+|||||+++++|.. +
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~-----~ 129 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGR--LYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEE-----G 129 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSC--EEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----T
T ss_pred hheeeeheeccCCCeEEEEEEECCCCe--EEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEe-----C
Confidence 469999999999999999999775544 89999 22389999999999876 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||| +|+|.+++...+ ..++|.++..|+.|++.||+|||
T Consensus 130 ~~~~lv~e~~-~~~L~~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH 174 (311)
T 3p1a_A 130 GILYLQTELC-GPSLQQHCEAWG---ASLPEAQVWGYLRDTLLALAHLH 174 (311)
T ss_dssp TEEEEEEECC-CCBHHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecc-CCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999 779999887542 45999999999999999999998
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-13 Score=141.97 Aligned_cols=103 Identities=27% Similarity=0.515 Sum_probs=88.4
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccC
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
++....++|+..+.||+|+||+||+|+....+ +.|||| +.++||||+++++++..
T Consensus 7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---- 80 (288)
T 3kfa_A 7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYS--LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR---- 80 (288)
T ss_dssp TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGT--EEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred cccccccceeEEeecCCCCceeEEEeEecCCC--EEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc----
Confidence 34445678999999999999999999976543 489999 57899999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++... ...+++..+..++.|+++||+|||
T Consensus 81 -~~~~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH 128 (288)
T 3kfa_A 81 -EPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE 128 (288)
T ss_dssp -SSSEEEEEECCTTEEHHHHHHHCC--TTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEEEcCCCCcHHHHHHhcc--cCCccHhHHHHHHHHHHHHHHHHH
Confidence 677999999999999999997542 345899999999999999999998
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.5e-13 Score=147.61 Aligned_cols=96 Identities=28% Similarity=0.341 Sum_probs=84.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+.||+|+||+||+|.....+. .|||| +.++|||||++++++..
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~----- 219 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGR--YYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT----- 219 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEE-----
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCC--EEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee-----
Confidence 4679999999999999999999765444 89999 46789999999999876
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.+++... ..+++.++..|+.||++||+|||
T Consensus 220 ~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 265 (446)
T 4ejn_A 220 HDRLCFVMEYANGGELFFHLSRE----RVFSEDRARFYGAEIVSALDYLH 265 (446)
T ss_dssp TTEEEEEECCCSSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeeCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999743 35899999999999999999998
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-13 Score=142.74 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=84.0
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCC-CCcceeeEeeeeecccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSI-RHRNLVKIITSCASVDF 757 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l-~H~niv~l~~~~~~~~~ 757 (809)
..++|+..+.||+|+||+||+|+... +++.|||| +.+ +||+|+++++++..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~--~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~--- 92 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKG--TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT--- 92 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETT--EEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEEC---
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECC--CCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEc---
Confidence 34689999999999999999999654 45689999 233 89999999999664
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.++++.. ..+++.++..++.||+.||+|||
T Consensus 93 --~~~~~lv~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 138 (353)
T 2i0e_A 93 --MDRLYFVMEYVNGGDLMYHIQQV----GRFKEPHAVFYAAEIAIGLFFLQ 138 (353)
T ss_dssp --SSEEEEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999743 35899999999999999999998
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.3e-13 Score=141.05 Aligned_cols=90 Identities=26% Similarity=0.337 Sum_probs=79.0
Q ss_pred cceeccCCceeEEEEEECCCCceeEEEEe-----------------cCCC-CcceeeEeeeeeccccCCCceEEEEEecc
Q 040849 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSIR-HRNLVKIITSCASVDFQGNDFKALVYEFM 770 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l~-H~niv~l~~~~~~~~~~~~~~~~lv~Ey~ 770 (809)
.+.||+|+||+||+|.....+. .|||| +.++ |||||++++++.. +...|+|||||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~-----~~~~~lv~e~~ 88 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQ--AFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHD-----QLHTFLVMELL 88 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCC--EEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----SSEEEEEECCC
T ss_pred CCccccCCCeEEEEEEECCCCC--EEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEc-----CCEEEEEEEcc
Confidence 4789999999999999765544 89999 3454 9999999999765 77899999999
Q ss_pred CCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 771 VNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 771 ~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|+|.++++.. ..+++.++..|+.|+++||+|||
T Consensus 89 ~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~LH 123 (325)
T 3kn6_A 89 NGGELFERIKKK----KHFSETEASYIMRKLVSAVSHMH 123 (325)
T ss_dssp CSCBHHHHHHHC----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999754 45899999999999999999998
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=7.5e-13 Score=137.23 Aligned_cols=96 Identities=22% Similarity=0.386 Sum_probs=85.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+.||+|+||+||+|+....+. .|||| +.++||||+++++++..
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 80 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKF--ILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD----- 80 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCc--EEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEec-----
Confidence 4679999999999999999999766544 89999 56899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++||||+++|+|.+++... ..+++.++..++.|++.||+|||
T Consensus 81 ~~~~~lv~e~~~~~~l~~~l~~~----~~~~~~~~~~~~~qi~~~l~~LH 126 (279)
T 3fdn_A 81 ATRVYLILEYAPLGTVYRELQKL----SKFDEQRTATYITELANALSYCH 126 (279)
T ss_dssp SSEEEEEECCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999743 34899999999999999999998
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.5e-13 Score=144.63 Aligned_cols=100 Identities=24% Similarity=0.377 Sum_probs=85.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
+.|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++... +...
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~---~~~~ 83 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGD--LFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTRH 83 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTCC
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCc--EEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccC---CCCe
Confidence 468899999999999999999765444 89999 468999999999997652 2447
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.++++... ....+++.++..++.|++.||+|||
T Consensus 84 ~~lv~e~~~~g~L~~~l~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH 129 (396)
T 4eut_A 84 KVLIMEFCPCGSLYTVLEEPS-NAYGLPESEFLIVLRDVVGGMNHLR 129 (396)
T ss_dssp EEEEECCCTTEEHHHHTTSGG-GTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHhhh-cccCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998643 2234899999999999999999998
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-13 Score=148.91 Aligned_cols=101 Identities=30% Similarity=0.404 Sum_probs=85.7
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+....++|+..+.||+|+||+||+|++.+ . .|||| ++++|||||+++++|.. ++
T Consensus 188 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~--~--~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~ 259 (450)
T 1k9a_A 188 WALNMKELKLLQTIGKGEFGDVMLGDYRG--N--KVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE----EK 259 (450)
T ss_dssp CBCCGGGEEEEEEEEECSSEEEEEEEETT--E--EEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEEC----TT
T ss_pred cccChHHeEEEeeecCcCCeeEEEEEecC--C--eEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEc----CC
Confidence 33455778999999999999999999752 3 89999 57899999999999765 23
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...|+|||||++|+|.++++.++ ...+++.++..++.|||+||+|||
T Consensus 260 ~~~~iv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~LH 306 (450)
T 1k9a_A 260 GGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLE 306 (450)
T ss_dssp SCEEEEEECCTTCBHHHHHHHHC--TTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998542 234789999999999999999998
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=144.01 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=83.3
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------------cCCCCcceeeEeeeee
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------~~l~H~niv~l~~~~~ 753 (809)
..++|...+.||+|+||+||+|.....+. .|||| ++++|||||++++++.
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~ 210 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCK--KVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD 210 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCc--EEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence 35679999999999999999999766544 89998 3578999999999864
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.+++... ..+++.++..|+.|+++||+|||
T Consensus 211 ------~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~LH 256 (419)
T 3i6u_A 211 ------AEDYYIVLELMEGGELFDKVVGN----KRLKEATCKLYFYQMLLAVQYLH 256 (419)
T ss_dssp ------SSEEEEEEECCTTCBGGGGTSSS----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------cCceEEEEEcCCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999998753 45899999999999999999998
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-13 Score=146.51 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=82.7
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||+||+|.....+ +.||+| +.++|||||++++++.. +
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~--~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-----~ 82 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAG--QEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISE-----E 82 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTT--EEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEEC-----S
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCC--cEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEE-----C
Confidence 457999999999999999999966544 489998 46899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.+++..+ ..+++.++..++.||++||+|||
T Consensus 83 ~~~~lv~E~~~gg~L~~~i~~~----~~~~e~~~~~i~~qil~aL~~lH 127 (444)
T 3soa_A 83 GHHYLIFDLVTGGELFEDIVAR----EYYSEADASHCIQQILEAVLHCH 127 (444)
T ss_dssp SEEEEEECCCBCCBHHHHHHHC----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999754 35899999999999999999998
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-13 Score=141.05 Aligned_cols=100 Identities=20% Similarity=0.338 Sum_probs=83.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+.||+|+||+||+|+....+ +.|||| +.++|||||++++++.... ..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 87 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDH--RDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PA 87 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE-TT
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCC--ceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC-CC
Confidence 357999999999999999999965543 489999 4678999999999976521 11
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...|+|||||++|+|.++++.. ..+++.++..++.|+++||+|||
T Consensus 88 ~~~~~lv~e~~~g~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 133 (311)
T 3ork_A 88 GPLPYIVMEYVDGVTLRDIVHTE----GPMTPKRAIEVIADACQALNFSH 133 (311)
T ss_dssp EEEEEEEEECCCEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccEEEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 23459999999999999999743 35899999999999999999998
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.6e-13 Score=139.33 Aligned_cols=103 Identities=26% Similarity=0.448 Sum_probs=85.7
Q ss_pred hcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEeeeeecccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
..++|...+.||+|+||.||+|+... ...++.|||| +.++|||||++++++..
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--- 97 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQ--- 97 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEec---
Confidence 35678999999999999999998632 2234689999 57899999999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCC--------------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPE--------------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++..+. ....+++.++..++.|+++||+|||
T Consensus 98 --~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH 167 (314)
T 2ivs_A 98 --DGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA 167 (314)
T ss_dssp --SSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH
T ss_pred --CCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999985432 1234889999999999999999998
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.6e-13 Score=141.79 Aligned_cols=106 Identities=24% Similarity=0.420 Sum_probs=86.6
Q ss_pred HHHhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCC-CCcceeeEeeeee
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSI-RHRNLVKIITSCA 753 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l-~H~niv~l~~~~~ 753 (809)
+....++|...+.||+|+||+||+|+... .+.++.|||| +.+ +||||+++++++.
T Consensus 40 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 119 (344)
T 1rjb_A 40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT 119 (344)
T ss_dssp GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 34456789999999999999999999632 2345689999 345 8999999999976
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCC-------------------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEA-------------------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~-------------------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. ++..++|||||++|+|.+++...+.. ...+++.++..++.|+++||+|||
T Consensus 120 ~-----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 189 (344)
T 1rjb_A 120 L-----SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE 189 (344)
T ss_dssp S-----SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred e-----CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 5 67799999999999999999865321 134799999999999999999998
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=141.42 Aligned_cols=98 Identities=23% Similarity=0.510 Sum_probs=82.5
Q ss_pred cccccceeccCCceeEEEEEECCC-CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.|...+.||+|+||+||+|+..+. +....|||| ++++|||||+++++|.. +++.
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~~ 165 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SEGS 165 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECC----CSSC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEc----CCCC
Confidence 466778999999999999997533 344578999 56899999999998754 2457
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.++++... ..+++.++..++.||++||+|||
T Consensus 166 ~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~qi~~aL~~LH 209 (373)
T 3c1x_A 166 PLVVLPYMKHGDLRNFIRNET---HNPTVKDLIGFGLQVAKGMKFLA 209 (373)
T ss_dssp CEEEEECCTTCBHHHHHHCTT---CCCBHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998542 45889999999999999999998
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-13 Score=144.49 Aligned_cols=104 Identities=15% Similarity=0.231 Sum_probs=83.7
Q ss_pred HhcccccccceeccCCceeEEEEEECC---CCceeEEEEe-----------------cCCC---CcceeeEeeeeecccc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK-----------------RSIR---HRNLVKIITSCASVDF 757 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK-----------------~~l~---H~niv~l~~~~~~~~~ 757 (809)
...++|...+.||+|+||+||+|+..+ ...++.|||| +.++ |+||+++++++..
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~--- 138 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF--- 138 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC---
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeec---
Confidence 345679999999999999999995321 2234489999 2344 9999999999875
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCC-CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPE-APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~-~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.++++..+. ....++|.++..|+.||++||+|||
T Consensus 139 --~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH 189 (365)
T 3e7e_A 139 --QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH 189 (365)
T ss_dssp --SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999974221 2356999999999999999999998
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-13 Score=140.27 Aligned_cols=104 Identities=20% Similarity=0.267 Sum_probs=84.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.++|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++... ......
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~~~ 104 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGH--FYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE-RGAKHE 104 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCC--EEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE-ETTEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCc--EEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec-cCCCce
Confidence 4579999999999999999999755444 89999 578999999999998631 112457
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++.........+++.++..++.|+++||+|||
T Consensus 105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH 151 (317)
T 2buj_A 105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH 151 (317)
T ss_dssp EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999753323456999999999999999999998
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.35 E-value=8.1e-13 Score=144.32 Aligned_cols=101 Identities=20% Similarity=0.359 Sum_probs=82.4
Q ss_pred cccccc-ceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 704 DGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 704 ~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
++|... ++||+|+||+||+|.....+. .|||| +..+|||||++++++... +.++...|+|
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~--~vAiK~~~~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~~~~lv 137 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQE--KFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKCLLIV 137 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCC--EEEEEEeCcchhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCcEEEEE
Confidence 456665 689999999999999765444 89999 346899999999987541 2335678999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||++|+|.++++.+. ...+++.++..|+.||++||+|||
T Consensus 138 ~E~~~gg~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH 178 (400)
T 1nxk_A 138 MECLDGGELFSRIQDRG--DQAFTEREASEIMKSIGEAIQYLH 178 (400)
T ss_dssp EECCCSEEHHHHHHCC-----CCBHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998653 245899999999999999999998
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9e-13 Score=136.49 Aligned_cols=95 Identities=32% Similarity=0.385 Sum_probs=84.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+.|+..+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. ++..
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 81 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRI--RRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFED-----NTDI 81 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSEE
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCc--EEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-----CCeE
Confidence 468899999999999999999766544 88998 57899999999999765 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 82 ~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH 123 (277)
T 3f3z_A 82 YLVMELCTGGELFERVVHK----RVFRESDAARIMKDVLSAVAYCH 123 (277)
T ss_dssp EEEEECCCSCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743 34899999999999999999998
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-13 Score=138.64 Aligned_cols=99 Identities=27% Similarity=0.438 Sum_probs=83.9
Q ss_pred hcccccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
..++|+..+.||+|+||+||+|...... .+..||+| +.++||||+++++++.
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------ 86 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------ 86 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc------
Confidence 3467899999999999999999976432 34579999 4689999999999863
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++.++ ..+++.++..++.|+++||+|||
T Consensus 87 ~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~qi~~~l~~lH 133 (281)
T 1mp8_A 87 ENPVWIIMELCTLGELRSFLQVRK---YSLDLASLILYAYQLSTALAYLE 133 (281)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHTT---TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEEecCCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999997542 45899999999999999999998
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.3e-13 Score=144.10 Aligned_cols=106 Identities=19% Similarity=0.308 Sum_probs=82.2
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeecccc-------
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDF------- 757 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~------- 757 (809)
...++|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++.....
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~--~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~ 81 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGK--RFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQ 81 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCC--EEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC---------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCC--EEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCcccccccc
Confidence 445789999999999999999999765444 89999 57899999999999854211
Q ss_pred --------------------------CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 --------------------------QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 --------------------------~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+....++|||||+ |+|.+.++........+++..+..|+.|+++||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 158 (383)
T 3eb0_A 82 PPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH 158 (383)
T ss_dssp ----------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23455899999998 5887777632222356999999999999999999998
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=150.00 Aligned_cols=96 Identities=24% Similarity=0.441 Sum_probs=81.8
Q ss_pred cccccc-eeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLEN-LIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~-~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++...+ .||+|+||+||+|.+.....+..|||| +.++|||||+++++|.. +.
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~------~~ 409 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------EA 409 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES------SS
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc------CC
Confidence 344444 799999999999998755556689999 57899999999999753 45
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.++++.+ ...+++.++..|+.|||+||+|||
T Consensus 410 ~~lv~E~~~~g~L~~~l~~~---~~~l~~~~~~~i~~qi~~~L~~LH 453 (613)
T 2ozo_A 410 LMLVMEMAGGGPLHKFLVGK---REEIPVSNVAELLHQVSMGMKYLE 453 (613)
T ss_dssp EEEEEECCTTCBHHHHHTTC---TTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999754 245899999999999999999998
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-13 Score=136.23 Aligned_cols=93 Identities=31% Similarity=0.496 Sum_probs=80.2
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|+..+.||+|+||.||+|+..+ . .|||| +.++||||+++++++..
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~~--~--~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 77 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWIG--D--EVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLK---- 77 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEETT--E--EEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECC----
T ss_pred hhheeeeeeeccCCCeEEEEEEEcC--C--eEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec----
Confidence 3578899999999999999999642 3 79998 35799999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++. ..+++.++..++.|+++||+|||
T Consensus 78 -~~~~~lv~e~~~~~~L~~~~~~-----~~~~~~~~~~i~~~l~~~l~~lH 122 (271)
T 3dtc_A 78 -EPNLCLVMEFARGGPLNRVLSG-----KRIPPDILVNWAVQIARGMNYLH 122 (271)
T ss_dssp -C--CEEEEECCTTEEHHHHHTS-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEEEcCCCCCHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999963 34899999999999999999998
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-13 Score=142.18 Aligned_cols=109 Identities=22% Similarity=0.220 Sum_probs=86.8
Q ss_pred CcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCC-CCCCccCCccccccccCCccccCCCcCcccCCc
Q 040849 63 CQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKN-NSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPD 141 (809)
Q Consensus 63 c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 141 (809)
|.|.+|.|+.. +.+++ +|. +..+++|++|+|++ |.|++..|..|+++++|++|+|++|+|++..|.
T Consensus 8 C~~~~v~~~~~-----------n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 8 HGSSGLRCTRD-----------GALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp SSSSCEECCSS-----------CCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred ccCCEEEcCCC-----------CCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence 78877777532 14543 677 88889999999986 899888888888888999999999988888888
Q ss_pred cccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcc
Q 040849 142 NISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSG 185 (809)
Q Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 185 (809)
.|.++++|++|+|++|+|++..+..|..++ |++|+|.+|.+..
T Consensus 75 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888888888888888888876666666665 8888888887763
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.5e-13 Score=136.79 Aligned_cols=96 Identities=28% Similarity=0.424 Sum_probs=83.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|+..+.||+|+||+||+|+..++ . .|||| +.++||||+++++++.. ++..
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~-~--~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 78 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQ-Y--DVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK-----EYPI 78 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTT-E--EEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSE
T ss_pred hhheeeeeeeccCCCceEEEEEecCc-e--eEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEcc-----CCce
Confidence 46789999999999999999987643 3 69999 46899999999999764 6779
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.++++.. ...+++.++..++.|+++||+|||
T Consensus 79 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~lH 121 (268)
T 3sxs_A 79 YIVTEYISNGCLLNYLRSH---GKGLEPSQLLEMCYDVCEGMAFLE 121 (268)
T ss_dssp EEEEECCTTCBHHHHHHHH---GGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCcHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999753 235899999999999999999998
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-13 Score=149.74 Aligned_cols=102 Identities=25% Similarity=0.472 Sum_probs=86.5
Q ss_pred HHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeecccc
Q 040849 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 697 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
+++....++|...+.||+|+||+||+|.+..+ . .|||| +.++|||||++++++.
T Consensus 181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~-~--~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~---- 253 (454)
T 1qcf_A 181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKH-T--KVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT---- 253 (454)
T ss_dssp TCSBCCGGGEEEEEEEECCSSEEEEEEEETTT-E--EEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC----
T ss_pred cceeechHHeEEEEEcccCCceEEEEEEECCc-c--EEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe----
Confidence 34455667899999999999999999997643 3 79999 5789999999999874
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++|||||++|+|.++++..+ ...+++.++..|+.|||+||+|||
T Consensus 254 --~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~LH 301 (454)
T 1qcf_A 254 --KEPIYIITEFMAKGSLLDFLKSDE--GSKQPLPKLIDFSAQIAEGMAFIE 301 (454)
T ss_dssp --SSSCEEEECCCTTCBHHHHHHSHH--HHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccEEEEeecCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999998542 234789999999999999999998
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.34 E-value=9e-13 Score=140.12 Aligned_cols=95 Identities=21% Similarity=0.376 Sum_probs=83.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~----- 80 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQ--KVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITT----- 80 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEEC-----
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCC--EEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----
Confidence 3579999999999999999999765544 89999 56899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+ +|+|.+++..+ ..+++.++..++.|+++||+|||
T Consensus 81 ~~~~~lv~E~~-~g~l~~~l~~~----~~l~~~~~~~i~~qi~~aL~~LH 125 (336)
T 3h4j_B 81 PTDIVMVIEYA-GGELFDYIVEK----KRMTEDEGRRFFQQIICAIEYCH 125 (336)
T ss_dssp SSEEEEEECCC-CEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECC-CCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999 78999998743 35899999999999999999998
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-14 Score=152.70 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=26.9
Q ss_pred CCCCCEEEccccccccc----cCccccCCCCCCEEeCcCCccccc----cchhhcCCCCCCEEeCCCCCccc
Q 040849 514 LKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLGMNGNFFQGN----IPSSFSSLRGIENLDLSRNNLSG 577 (809)
Q Consensus 514 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~ 577 (809)
.++|++|||++|.|+.. ++..+...++|++|+|++|.|++. ++..+...++|++|||++|.|+.
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 34444444444444322 123333444444444444444432 22223333444444444444443
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-13 Score=142.66 Aligned_cols=94 Identities=22% Similarity=0.343 Sum_probs=76.2
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+...+.||+|+||+||+|+....+. .||+| +.++|||||++++++.. .+..++
T Consensus 91 ~~~~~~lG~G~~g~Vy~a~~~~~g~--~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----~~~~~l 163 (373)
T 2x4f_A 91 VSKTEILGGGRFGQVHKCEETATGL--KLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFES-----KNDIVL 163 (373)
T ss_dssp EEEEEECC-----CEEEEEETTTCC--EEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SSEEEE
T ss_pred eecceEEecCcCEEEEEEEEcCCCc--EEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----CCEEEE
Confidence 3446789999999999999765444 89999 57899999999999765 678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|.+++... ...+++.++..++.||++||+|||
T Consensus 164 v~E~~~~~~L~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH 204 (373)
T 2x4f_A 164 VMEYVDGGELFDRIIDE---SYNLTELDTILFMKQICEGIRHMH 204 (373)
T ss_dssp EEECCTTCEEHHHHHHT---GGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998743 245899999999999999999998
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=138.31 Aligned_cols=100 Identities=26% Similarity=0.351 Sum_probs=84.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||.||+|.....+. .|||| +.++||||+++++++..
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----- 103 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGV--PVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE----- 103 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCC--EEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCc--eEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----
Confidence 4579999999999999999999765444 89999 46899999999999876
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++.........+++.++..++.|+++||+|||
T Consensus 104 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH 153 (310)
T 2wqm_A 104 DNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH 153 (310)
T ss_dssp TTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999998743222356899999999999999999998
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.34 E-value=8.9e-13 Score=137.49 Aligned_cols=99 Identities=22% Similarity=0.199 Sum_probs=83.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||+||+|+....+ +.|||| +.++||||+++++++.. +
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~-----~ 78 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSG--QIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR-----E 78 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----S
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCC--eEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeec-----c
Confidence 467999999999999999999975544 489999 46799999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++|||||+ |+|.++++........+++.++..|+.|+++||+|||
T Consensus 79 ~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH 126 (290)
T 3fme_A 79 GDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH 126 (290)
T ss_dssp SSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 77999999997 5888877642222356999999999999999999998
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=135.21 Aligned_cols=97 Identities=25% Similarity=0.447 Sum_probs=81.0
Q ss_pred ccccccc-eeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLEN-LIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~-~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|...+ .||+|+||.||+|+......++.|||| +.++||||+++++++. .+
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~ 82 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------AE 82 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE------SS
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec------CC
Confidence 4566665 999999999999997654455689999 4689999999999974 45
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.+++... ...+++.++..++.|+++||+|||
T Consensus 83 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH 127 (287)
T 1u59_A 83 ALMLVMEMAGGGPLHKFLVGK---REEIPVSNVAELLHQVSMGMKYLE 127 (287)
T ss_dssp SEEEEEECCTTEEHHHHHTTC---TTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHhC---CccCCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999754 245899999999999999999998
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=136.68 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=84.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||+||+|+....+. .||+| +.++||||+++++++..
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----- 86 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKE--VFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED----- 86 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCc--eEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeecc-----
Confidence 3568899999999999999999765544 89998 47899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 87 ~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH 132 (294)
T 2rku_A 87 NDFVFVVLELCRRRSLLELHKRR----KALTEPEARYYLRQIVLGCQYLH 132 (294)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998743 35899999999999999999998
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=134.59 Aligned_cols=95 Identities=22% Similarity=0.384 Sum_probs=84.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++.. ++.
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 79 (276)
T 2yex_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEE--AVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-----GNI 79 (276)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTE
T ss_pred cceEEEEEeecCCCcEEEEEEECCCCc--EEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEc-----CCE
Confidence 568999999999999999999765444 89999 46899999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 80 ~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH 122 (276)
T 2yex_A 80 QYLFLEYCSGGELFDRIEPD----IGMPEPDAQRFFHQLMAGVVYLH 122 (276)
T ss_dssp EEEEEECCTTEEGGGGSBTT----TBCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999743 45899999999999999999998
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=147.41 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=80.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+.|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ..
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~ 109 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHV--ERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFED-----KR 109 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCC--EEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SS
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCc--EEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----CC
Confidence 458899999999999999999765444 89999 57899999999999765 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||++|+|.+++..+ ..+++.++..|+.||++||+|||
T Consensus 110 ~~~lv~e~~~~g~L~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH 153 (494)
T 3lij_A 110 NYYLVMECYKGGELFDEIIHR----MKFNEVDAAVIIKQVLSGVTYLH 153 (494)
T ss_dssp EEEEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988743 35899999999999999999998
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=141.84 Aligned_cols=103 Identities=26% Similarity=0.451 Sum_probs=85.3
Q ss_pred hcccccccceeccCCceeEEEEEECCC-----CceeEEEEe---------------------cCC-CCcceeeEeeeeec
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHD-----DHETLVAVK---------------------RSI-RHRNLVKIITSCAS 754 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~-----~~~~~vavK---------------------~~l-~H~niv~l~~~~~~ 754 (809)
..++|...+.||+|+||+||+|+.... ..++.|||| +.+ +|||||++++++..
T Consensus 67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 346788999999999999999996421 234579999 234 89999999999765
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.++++.++. ....+++.++..|+.|+++||+|||
T Consensus 147 -----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 208 (382)
T 3tt0_A 147 -----DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA 208 (382)
T ss_dssp -----SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999985431 1245899999999999999999998
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=138.83 Aligned_cols=103 Identities=23% Similarity=0.459 Sum_probs=83.9
Q ss_pred hcccccccceeccCCceeEEEEEECCC-----CceeEEEEe---------------------cCC-CCcceeeEeeeeec
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHD-----DHETLVAVK---------------------RSI-RHRNLVKIITSCAS 754 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~-----~~~~~vavK---------------------~~l-~H~niv~l~~~~~~ 754 (809)
..++|...+.||+|+||+||+|+.... ..++.|||| +.+ +||||+++++++..
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 112 (334)
T 2pvf_A 33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 112 (334)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence 356799999999999999999997521 234579999 234 89999999999765
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCCC------------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEA------------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~------------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++..+.. ...+++.++..++.|+++||+|||
T Consensus 113 -----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 174 (334)
T 2pvf_A 113 -----DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA 174 (334)
T ss_dssp -----SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999865321 234899999999999999999998
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.6e-13 Score=139.80 Aligned_cols=98 Identities=20% Similarity=0.296 Sum_probs=83.9
Q ss_pred cccccccceeccCCceeEEEEEECC-CCceeEEEEe------------------------cCCCCcceeeEeeeeecccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVK------------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~-~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
.++|+..+.||+|+||+||+|+... ...++.||+| +.++|||||++++++..
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--- 92 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQT--- 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEEC---
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEc---
Confidence 4679999999999999999998742 1234589999 35789999999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++... ..+++.++..++.||+.||+|||
T Consensus 93 --~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~al~~lH 138 (327)
T 3a62_A 93 --GGKLYLILEYLSGGELFMQLERE----GIFMEDTACFYLAEISMALGHLH 138 (327)
T ss_dssp --SSCEEEEEECCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEeCCCCCcHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999743 35889999999999999999998
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=140.39 Aligned_cols=96 Identities=23% Similarity=0.249 Sum_probs=84.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.++|+..+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. ++
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 104 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGL--VMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DG 104 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE-----TT
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCc--EEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEE-----CC
Confidence 3579999999999999999999765444 89999 56899999999999876 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||++|+|.++++.. ..+++..+..++.|+++||+|||
T Consensus 105 ~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~~i~~~l~~lh 148 (360)
T 3eqc_A 105 EISICMEHMDGGSLDQVLKKA----GRIPEQILGKVSIAVIKGLTYLR 148 (360)
T ss_dssp EEEEEECCCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999753 34899999999999999999998
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=134.85 Aligned_cols=98 Identities=29% Similarity=0.427 Sum_probs=83.3
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.|...+.||+|+||+||+|.....+. .||+| +.++|||||++++++... ..++..
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~--~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~~ 103 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTV--EVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKC 103 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCce--EEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCCce
Confidence 47778899999999999999765544 89988 578999999999987642 233567
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.++++.. ..+++..+..++.|+++||+|||
T Consensus 104 ~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 146 (290)
T 1t4h_A 104 IVLVTELMTSGTLKTYLKRF----KVMKIKVLRSWCRQILKGLQFLH 146 (290)
T ss_dssp EEEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999743 35899999999999999999998
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-12 Score=138.32 Aligned_cols=94 Identities=29% Similarity=0.465 Sum_probs=80.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
++|+..+.||+|+||+||+|+... . .|||| ++++|||||++++++. +..++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~~--~--~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-------~~~~l 76 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWRA--K--DVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL-------NPVCL 76 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEETT--E--EEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCT-------TTTEE
T ss_pred hHeeeeeEeecCCCceEEEEEECC--e--eEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEc-------CCcEE
Confidence 468889999999999999999653 3 79999 5689999999999864 24799
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.++++... ....+++.++..++.|+++||+|||
T Consensus 77 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~~l~~LH 119 (307)
T 2eva_A 77 VMEYAEGGSLYNVLHGAE-PLPYYTAAHAMSWCLQCSQGVAYLH 119 (307)
T ss_dssp EEECCTTCBHHHHHHCSS-SEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHhccC-CCCccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998653 2234789999999999999999998
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=138.28 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=83.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeecccc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
+.|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++..
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--- 86 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGL--EYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYEN--- 86 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCe--EEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEec---
Confidence 468899999999999999999765444 89999 35789999999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 87 --~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~lH 132 (321)
T 2a2a_A 87 --RTDVVLILELVSGGELFDFLAQK----ESLSEEEATSFIKQILDGVNYLH 132 (321)
T ss_dssp --SSEEEEEECCCCSCBHHHHHHTC----SCEEHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEEcCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999753 45899999999999999999998
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=139.08 Aligned_cols=98 Identities=27% Similarity=0.356 Sum_probs=82.6
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
..++|+..+.||+|+||+||+|+.. ++.|||| ..++||||+++++++.... .+...
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~ 109 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR----GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGT-GSWTQ 109 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET----TEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC-GGGCE
T ss_pred cccceEEEeEeecCCCeEEEEEEEC----CceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCC-CCCCc
Confidence 3467999999999999999999965 2389999 2359999999999987521 11267
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||++|+|.++++.. .+++.++..++.|++.||+|||
T Consensus 110 ~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~i~~~i~~~l~~lH 151 (337)
T 3mdy_A 110 LYLITDYHENGSLYDYLKST-----TLDAKSMLKLAYSSVSGLCHLH 151 (337)
T ss_dssp EEEEECCCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccCCCcHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999743 4899999999999999999998
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.7e-13 Score=135.36 Aligned_cols=96 Identities=28% Similarity=0.446 Sum_probs=84.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|+..+.||+|+||.||+|+..++ +.||+| +.++||||+++++++.. ++..
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 78 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNK---DKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-----QAPI 78 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTT---EEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-----SSSC
T ss_pred hhheeeeeEecCCCceeEEEEEecCC---CeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcc-----CCCe
Confidence 45788999999999999999997643 379999 57899999999999765 6779
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.++++..+ ..+++.++..++.|+++||+|||
T Consensus 79 ~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH 121 (267)
T 3t9t_A 79 CLVTEFMEHGCLSDYLRTQR---GLFAAETLLGMCLDVCEGMAYLE 121 (267)
T ss_dssp EEEECCCTTCBHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHhhCc---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997542 45899999999999999999998
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.2e-13 Score=139.04 Aligned_cols=104 Identities=26% Similarity=0.427 Sum_probs=85.9
Q ss_pred HhcccccccceeccCCceeEEEEEEC---CCCceeEEEEe---------------------cCC-CCcceeeEeeeeecc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVK---------------------RSI-RHRNLVKIITSCASV 755 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~---~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~ 755 (809)
...++|...+.||+|+||+||+|+.. +...++.|||| +.+ +||||+++++++..
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~- 98 (313)
T 1t46_A 20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI- 98 (313)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred cChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEec-
Confidence 34567999999999999999999852 22355689999 345 89999999999765
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCC--------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPE--------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.++++..+. ....+++.++..++.|+++||+|||
T Consensus 99 ----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH 162 (313)
T 1t46_A 99 ----GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA 162 (313)
T ss_dssp ----SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999985431 1235899999999999999999998
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-12 Score=135.20 Aligned_cols=102 Identities=25% Similarity=0.318 Sum_probs=80.5
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
...++|...+.||+|+||.||+|+.... ++.|||| +.++||||+++++++..
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 84 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPK--KEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVV----- 84 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC------CEEEEECCC----------------CCCCCCCTTBCCEEEEEES-----
T ss_pred cchhhhhhhheeccccceEEEEEEECCC--CcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEee-----
Confidence 3457899999999999999999985443 3489999 46789999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCC----CCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPK----PEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~----~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++... ......+++.++..++.|+++||+|||
T Consensus 85 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH 138 (303)
T 2vwi_A 85 KDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH 138 (303)
T ss_dssp SSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999998631 112345899999999999999999998
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=136.97 Aligned_cols=95 Identities=25% Similarity=0.374 Sum_probs=84.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++||||+++++++.. ++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~ 75 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQ--IVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRR-----KR 75 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TT
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCc--EEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeec-----CC
Confidence 578899999999999999999765444 89999 46899999999999875 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||++|+|.++++.. ..+++..+..++.|+++||+|||
T Consensus 76 ~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~i~~~l~~~l~~lH 119 (311)
T 4agu_A 76 RLHLVFEYCDHTVLHELDRYQ----RGVPEHLVKSITWQTLQAVNFCH 119 (311)
T ss_dssp EEEEEEECCSEEHHHHHHHTS----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCchHHHHHhhh----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988743 35899999999999999999998
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=134.95 Aligned_cols=95 Identities=22% Similarity=0.417 Sum_probs=80.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ++
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 74 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHE--IVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-----DK 74 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TT
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCc--eEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEe-----CC
Confidence 468899999999999999999765544 89999 57899999999999775 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||++ ++.+.+... ...+++.++..++.|+++||+|||
T Consensus 75 ~~~lv~e~~~~-~l~~~~~~~---~~~l~~~~~~~~~~ql~~~l~~lH 118 (292)
T 3o0g_A 75 KLTLVFEFCDQ-DLKKYFDSC---NGDLDPEIVKSFLFQLLKGLGFCH 118 (292)
T ss_dssp EEEEEEECCSE-EHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCC-CHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999986 555555432 245899999999999999999998
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.9e-13 Score=139.78 Aligned_cols=102 Identities=29% Similarity=0.495 Sum_probs=81.9
Q ss_pred cccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|...+.||+|+||.||+|+... ...++.|||| +.++||||+++++++..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---- 104 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ---- 104 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcC----
Confidence 4679999999999999999998542 2234589999 46799999999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCC---CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPE---APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~---~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+...|+|||||++|+|.++++..+. ....+++.++..++.|+++||+|||
T Consensus 105 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH 157 (327)
T 2yfx_A 105 -SLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 157 (327)
T ss_dssp -SSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999999985431 2245899999999999999999998
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=135.37 Aligned_cols=95 Identities=23% Similarity=0.360 Sum_probs=83.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeecccc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++||||+++++++..
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--- 79 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGK--EYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFEN--- 79 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCC--eeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecC---
Confidence 468899999999999999999765444 89998 35789999999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 80 --~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH 125 (283)
T 3bhy_A 80 --KTDVVLILELVSGGELFDFLAEK----ESLTEDEATQFLKQILDGVHYLH 125 (283)
T ss_dssp --SSEEEEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEEeecCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999743 35899999999999999999998
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=133.57 Aligned_cols=96 Identities=25% Similarity=0.422 Sum_probs=84.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||.||+|+....+. .|||| +.++||||+++++++..
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 82 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGH--KVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIST----- 82 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCc--eEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEec-----
Confidence 3578999999999999999999765444 89999 46899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 83 ~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 128 (276)
T 2h6d_A 83 PTDFFMVMEYVSGGELFDYICKH----GRVEEMEARRLFQQILSAVDYCH 128 (276)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeccCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999743 34899999999999999999998
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-13 Score=142.56 Aligned_cols=104 Identities=26% Similarity=0.376 Sum_probs=84.5
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeee
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~ 753 (809)
+....++|...+.||+|+||+||+|+....+. .||+| +.++|||||++++++.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~ 98 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRA--IRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE 98 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCc--eEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc
Confidence 34455679999999999999999999765544 89999 3578999999999976
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCC------------------------------------CCCCCCHHHHHHH
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPE------------------------------------APRNSNLLQRLSI 797 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------------------------------~~~~~~~~~~~~i 797 (809)
. ++..++|||||++|+|.+++..... ....+++..+..|
T Consensus 99 ~-----~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (345)
T 3hko_A 99 D-----EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNI 173 (345)
T ss_dssp C-----SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHH
T ss_pred c-----CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHH
Confidence 5 7789999999999999999852100 0112457788999
Q ss_pred HHHHHHHhhhcC
Q 040849 798 AVDVASALDYLH 809 (809)
Q Consensus 798 ~~~ia~gl~yLH 809 (809)
+.|+++||+|||
T Consensus 174 ~~qi~~~l~~LH 185 (345)
T 3hko_A 174 MRQIFSALHYLH 185 (345)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999998
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=136.88 Aligned_cols=97 Identities=27% Similarity=0.454 Sum_probs=83.9
Q ss_pred cccccccc-eeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLEN-LIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~-~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.+.|...+ .||+|+||+||+|.+.....++.|||| +.++||||+++++++.
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~------ 88 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE------ 88 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE------
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC------
Confidence 45677777 999999999999976555566789999 4689999999999973
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++||||+++|+|.++++.. ..+++.++..++.|+++||+|||
T Consensus 89 ~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~LH 134 (291)
T 1xbb_A 89 AESWMLVMEMAELGPLNKYLQQN----RHVKDKNIIELVHQVSMGMKYLE 134 (291)
T ss_dssp SSSEEEEEECCTTEEHHHHHHHC----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHhC----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999753 34899999999999999999998
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=138.46 Aligned_cols=98 Identities=30% Similarity=0.549 Sum_probs=83.3
Q ss_pred ccccccceeccCCceeEEEEEECCCC--ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDD--HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~--~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
..|+..+.||+|+||+||+|+....+ .+..|||| +.++||||+++++++.. .
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~ 118 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-----Y 118 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-----S
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec-----C
Confidence 45777899999999999999875432 24569999 47899999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++|||||++|+|.++++.. ...+++.++..++.|+++||+|||
T Consensus 119 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH 164 (333)
T 1mqb_A 119 KPMMIITEYMENGALDKFLREK---DGEFSVLQLVGMLRGIAAGMKYLA 164 (333)
T ss_dssp SSEEEEEECCTTEEHHHHHHHT---TTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999754 245899999999999999999998
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=138.83 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=84.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
..+|...+.||+|+||.||+++....+. .||+| +.++||||+++++++..
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----- 112 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKE--VFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED----- 112 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCC--EEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-----
Confidence 3568899999999999999999766544 89998 46899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.+++..+ ..+++.++..++.|+++||+|||
T Consensus 113 ~~~~~lv~e~~~~~~L~~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH 158 (335)
T 2owb_A 113 NDFVFVVLELCRRRSLLELHKRR----KALTEPEARYYLRQIVLGCQYLH 158 (335)
T ss_dssp SSEEEEEECCCTTCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCCCHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998743 35899999999999999999998
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=134.39 Aligned_cols=97 Identities=27% Similarity=0.409 Sum_probs=82.6
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
+|....+||+|+||.||+|+....+. .|||| +.++|||||++++++.. .+..+
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~ 95 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQV--RIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE-----NGFIK 95 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCC--EEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCe--EEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEe-----CCcEE
Confidence 45556699999999999999765544 89999 56899999999999875 67899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.++++... ....+++..+..++.|+++||+|||
T Consensus 96 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH 139 (295)
T 2clq_A 96 IFMEQVPGGSLSALLRSKW-GPLKDNEQTIGFYTKQILEGLKYLH 139 (295)
T ss_dssp EEEECCSEEEHHHHHHHTT-CCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhc-cCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998543 2345779999999999999999998
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=137.07 Aligned_cols=112 Identities=29% Similarity=0.509 Sum_probs=86.0
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECC-CCceeEEEEe----------------------cCCCCcceeeEeeeeec
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVK----------------------RSIRHRNLVKIITSCAS 754 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~-~~~~~~vavK----------------------~~l~H~niv~l~~~~~~ 754 (809)
++....++|...+.||+|+||.||+|+... ...++.|||| +.++||||+++++++..
T Consensus 28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~ 107 (313)
T 3brb_A 28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIE 107 (313)
T ss_dssp TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC
T ss_pred hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEee
Confidence 333445678999999999999999998754 3345689999 56899999999999876
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCC--CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKP--EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~--~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....+....++||||+++|+|.+++.... .....+++.++..++.|+++||+|||
T Consensus 108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 164 (313)
T 3brb_A 108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS 164 (313)
T ss_dssp -------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 32222235699999999999999985321 23456999999999999999999998
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=140.45 Aligned_cols=108 Identities=22% Similarity=0.315 Sum_probs=89.8
Q ss_pred ccccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------c-----CCCCcceee
Q 040849 692 LRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------R-----SIRHRNLVK 747 (809)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~-----~l~H~niv~ 747 (809)
..+++.+.....++|...+.||+|+||+||+|+....+. .|||| + .+.|||||+
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKK--YYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCe--EEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 344555555566789999999999999999999765544 89999 2 235999999
Q ss_pred EeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 748 l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++++.. .+..++||||+ +|+|.+++.... ...+++.++..|+.||+.||+|||
T Consensus 101 ~~~~~~~-----~~~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~LH 154 (360)
T 3llt_A 101 YHGKFMY-----YDHMCLIFEPL-GPSLYEIITRNN--YNGFHIEDIKLYCIEILKALNYLR 154 (360)
T ss_dssp EEEEEEE-----TTEEEEEECCC-CCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeE-----CCeeEEEEcCC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999876 67899999999 999999998543 235899999999999999999998
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=146.29 Aligned_cols=96 Identities=23% Similarity=0.362 Sum_probs=82.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------------------cCCCCcceeeEe
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------------------RSIRHRNLVKII 749 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------------------~~l~H~niv~l~ 749 (809)
.+.|...+.||+|+||+||+|+....+. .|||| +.++|||||+++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~ 112 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHS--EKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF 112 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCC--EEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCc--EEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 4679999999999999999999766544 89998 246899999999
Q ss_pred eeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 750 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++.. +...|+|||||++|+|.+++..+ ..+++.++..|+.||+.||+|||
T Consensus 113 ~~~~~-----~~~~~lv~e~~~gg~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~lH 163 (504)
T 3q5i_A 113 DVFED-----KKYFYLVTEFYEGGELFEQIINR----HKFDECDAANIMKQILSGICYLH 163 (504)
T ss_dssp EEEEC-----SSEEEEEEECCTTCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEc-----CCEEEEEEecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99765 77899999999999999998743 35899999999999999999998
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-13 Score=142.11 Aligned_cols=103 Identities=18% Similarity=0.368 Sum_probs=83.8
Q ss_pred hcccccccceeccCCceeEEEEEECCCC---ceeEEEEe-------------------------------cCCCCcceee
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDD---HETLVAVK-------------------------------RSIRHRNLVK 747 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~---~~~~vavK-------------------------------~~l~H~niv~ 747 (809)
..++|...+.||+|+||+||+|....+. .++.|||| +.++|||||+
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 3457999999999999999999986542 23479999 2567999999
Q ss_pred EeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 748 l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++++... ..+....+|||||| +|+|.+++... ...+++.++..|+.||++||+|||
T Consensus 113 ~~~~~~~~-~~~~~~~~lv~e~~-g~~L~~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH 169 (364)
T 3op5_A 113 YWGSGLHD-KNGKSYRFMIMDRF-GSDLQKIYEAN---AKRFSRKTVLQLSLRILDILEYIH 169 (364)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECE-EEEHHHHHHHT---TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeeec-cCCcceEEEEEeCC-CCCHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998752 12235689999999 99999999754 245999999999999999999998
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=135.01 Aligned_cols=96 Identities=21% Similarity=0.387 Sum_probs=84.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||.||+|.....+. .||+| +.++||||+++++++.. +
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 77 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGL--EFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-----E 77 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----S
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCc--eEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEc-----C
Confidence 4679999999999999999999765544 89999 46899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.+++..+ ..+++.++..++.|++.||+|||
T Consensus 78 ~~~~~v~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH 122 (284)
T 3kk8_A 78 SFHYLVFDLVTGGELFEDIVAR----EFYSEADASHCIQQILESIAYCH 122 (284)
T ss_dssp SEEEEEECCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999988743 35899999999999999999998
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-12 Score=136.48 Aligned_cols=106 Identities=23% Similarity=0.164 Sum_probs=74.9
Q ss_pred EEEccCC-cCcccCCCCccCCCCCCEEEccc-cccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCC
Q 040849 495 YLDLSQN-QLNGTLPSNFGILKNLGVLDVSE-NKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSR 572 (809)
Q Consensus 495 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 572 (809)
.++++++ ++++ +|. +..+++|+.|+|++ |+|++..|..|.++++|+.|+|++|+|++.+|..|.++++|+.|||++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566666 6663 555 77777777777775 777766667777777777777777777777777777777777777777
Q ss_pred CCcccccccccccCCCCCeEEccCCcccccC
Q 040849 573 NNLSGRIPKYFENFLFLQNLNLSFNHFEGEV 603 (809)
Q Consensus 573 N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~ 603 (809)
|+|++..+..|..++ |+.|++++|+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 777766666666555 777777777776543
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=139.21 Aligned_cols=97 Identities=24% Similarity=0.413 Sum_probs=81.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCc--eeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. ...||+| +.++|||||+++++|. +
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------~ 86 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP------G 86 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC------B
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc------C
Confidence 468889999999999999999765433 2247887 4679999999999874 3
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.++++..+ ..+++.++..|+.|+++||+|||
T Consensus 87 ~~~~~v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~qi~~~l~~lH 132 (325)
T 3kex_A 87 SSLQLVTQYLPLGSLLDHVRQHR---GALGPQLLLNWGVQIAKGMYYLE 132 (325)
T ss_dssp SSEEEEEECCTTCBSHHHHHSSG---GGSCTTHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEeCCCCCHHHHHHHcc---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999998542 45889999999999999999998
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=5.4e-13 Score=148.34 Aligned_cols=102 Identities=28% Similarity=0.480 Sum_probs=86.0
Q ss_pred HHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeecccc
Q 040849 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 697 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
+++....++|...+.||+|+||+||+|+...+ . .|||| ++++|||||++++++.
T Consensus 177 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~--~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---- 249 (452)
T 1fmk_A 177 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-T--RVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS---- 249 (452)
T ss_dssp TCSBCCGGGEEEEEEEEECSSCEEEEEEETTT-E--EEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred cccccChhHceeeeeecCCCCeEEEEEEECCC-c--eEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEc----
Confidence 34445567899999999999999999997653 3 69999 5689999999999875
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++|||||++|+|.++++... ...+++.++..|+.|||+||+|||
T Consensus 250 --~~~~~iv~e~~~~gsL~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~LH 297 (452)
T 1fmk_A 250 --EEPIYIVTEYMSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVE 297 (452)
T ss_dssp --SSSCEEEECCCTTCBHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCceEEEehhhcCCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999997431 235899999999999999999998
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=137.24 Aligned_cols=99 Identities=24% Similarity=0.496 Sum_probs=70.2
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.++|+..+.||+|+||+||+|..... ++.|||| +.++|||||++++++.. ++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~ 76 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTT--GVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHT-----EN 76 (317)
T ss_dssp ---------------CEEEEEECSSS--CCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECC-----TT
T ss_pred ccceeEeeEECCCCCEEEEEEEECCC--CcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEE-----CC
Confidence 45789999999999999999996544 3489999 57899999999999765 77
Q ss_pred eEEEEEeccCCCChhhhhcCCC--CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKP--EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~--~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||+ |+|.+++..+. .....+++..+..++.||++||+|||
T Consensus 77 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH 125 (317)
T 2pmi_A 77 KLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH 125 (317)
T ss_dssp EEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999998 69999886431 12345899999999999999999998
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=134.53 Aligned_cols=97 Identities=25% Similarity=0.391 Sum_probs=80.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------------------------------
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------------------------- 737 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------------------------- 737 (809)
.++|+..+.||+|+||+||+|+....+. .||||
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~ 89 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNT--YYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAI 89 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTE--EEEEEEEECC-------------------------------CHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCc--EEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHH
Confidence 4679999999999999999999665444 89988
Q ss_pred -cCCCCcceeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 738 -RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 738 -~~l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.++|||||++++++... .++..++||||+++|+|.+++.. ..+++.++..++.|+++||+|||
T Consensus 90 l~~l~h~~iv~~~~~~~~~---~~~~~~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 154 (298)
T 2zv2_A 90 LKKLDHPNVVKLVEVLDDP---NEDHLYMVFELVNQGPVMEVPTL-----KPLSEDQARFYFQDLIKGIEYLH 154 (298)
T ss_dssp HHTCCCTTBCCEEEEEECS---SSSEEEEEEECCTTCBSCCSSCS-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCeEEEEEEcC---CCCEEEEEEecCCCCcHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 135799999999997641 25679999999999999887642 35899999999999999999998
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-12 Score=136.08 Aligned_cols=95 Identities=35% Similarity=0.460 Sum_probs=81.2
Q ss_pred cccccc-ceeccCCceeEEEEEECCCCceeEEEEe--------------------cC-CCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RS-IRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~-l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+.|... +.||+|+||+||+|+.... ++.|||| .+ .+||||+++++++.. ++
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~-----~~ 84 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLIT--SQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEE-----ED 84 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSS--CCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TT
T ss_pred eeEEecCceecCCceEEEEEEEEcCC--CcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEee-----CC
Confidence 457664 7899999999999995544 3489999 23 579999999999775 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~lH 128 (316)
T 2ac3_A 85 RFYLVFEKMRGGSILSHIHKR----RHFNELEASVVVQDVASALDFLH 128 (316)
T ss_dssp EEEEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999753 35899999999999999999998
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=134.91 Aligned_cols=95 Identities=25% Similarity=0.437 Sum_probs=84.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|...+.||+|+||.||+|+....+. .|||| +.++||||+++++++.. +
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 86 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKF--IMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHD-----R 86 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTE--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----S
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCc--EEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEc-----C
Confidence 578999999999999999999765444 89999 46899999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 87 ~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 131 (284)
T 2vgo_A 87 KRIYLMLEFAPRGELYKELQKH----GRFDEQRSATFMEELADALHYCH 131 (284)
T ss_dssp SEEEEEECCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999753 34899999999999999999998
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-13 Score=147.18 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=104.6
Q ss_pred CCCCEEEeeCCeeecccCcCCcC-----CCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCC
Q 040849 418 HKLQRLGLQGNKFLGEIPSSIGN-----LTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSL 492 (809)
Q Consensus 418 ~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 492 (809)
+.|+.|+|++|.++......+.. .++|++|+|++|.++......+. ..+.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~-----------------------~~L~~L 128 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL-----------------------PVFLRA 128 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH-----------------------HHHHTE
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH-----------------------HHHHhc
Confidence 46777777777776433222221 13455555555555432211111 122334
Q ss_pred ceEEEccCCcCcccCCCCc-----cCCCCCCEEEccccccccc----cCccccCCCCCCEEeCcCCccccc----cchhh
Q 040849 493 SIYLDLSQNQLNGTLPSNF-----GILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLGMNGNFFQGN----IPSSF 559 (809)
Q Consensus 493 ~~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~ 559 (809)
+.|+|++|+++......+ ...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++. ++..+
T Consensus 129 -~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 129 -RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp -EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred -cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 455555555543222222 2357899999999998753 445567889999999999999864 36677
Q ss_pred cCCCCCCEEeCCCCCcccc----cccccccCCCCCeEEccCCcccc
Q 040849 560 SSLRGIENLDLSRNNLSGR----IPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 560 ~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
...++|+.|||++|+++.. ++..+...++|++||+++|+++.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 8889999999999999864 44556677999999999999874
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=136.46 Aligned_cols=95 Identities=24% Similarity=0.437 Sum_probs=82.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ++.
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 74 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDN--LVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-----EKS 74 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEEC-----SSC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCc--EEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEee-----CCE
Confidence 568899999999999999999765444 89999 46789999999999765 678
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++|||||+ |+|.+++...+ ..+++.++..++.|+++||+|||
T Consensus 75 ~~lv~e~~~-~~l~~~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH 117 (324)
T 3mtl_A 75 LTLVFEYLD-KDLKQYLDDCG---NIINMHNVKLFLFQLLRGLAYCH 117 (324)
T ss_dssp EEEEEECCS-EEHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccc-cCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999998 59999987542 45899999999999999999998
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=133.51 Aligned_cols=95 Identities=31% Similarity=0.490 Sum_probs=81.7
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------------cCCCCcceeeEeeeeecc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------------RSIRHRNLVKIITSCASV 755 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------------~~l~H~niv~l~~~~~~~ 755 (809)
.++|+..+.||+|+||+||+|+....+. .|||| +.++||||+++++++..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~- 94 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKS--VVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN- 94 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCC--EEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT-
T ss_pred hccceehhccccCCceeEEEEEEcCCce--EEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC-
Confidence 3578999999999999999999765544 89999 35789999999999753
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. .++||||+++|+|.+++..+. ..+++.++..++.|+++||+|||
T Consensus 95 ----~--~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~lH 139 (287)
T 4f0f_A 95 ----P--PRMVMEFVPCGDLYHRLLDKA---HPIKWSVKLRLMLDIALGIEYMQ 139 (287)
T ss_dssp ----T--TEEEEECCTTCBHHHHHHCTT---SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----C--CeEEEEecCCCCHHHHHhccc---CCccHHHHHHHHHHHHHHHHHHH
Confidence 2 279999999999999987542 46899999999999999999998
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=135.03 Aligned_cols=99 Identities=25% Similarity=0.516 Sum_probs=82.0
Q ss_pred ccccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
..|...+.||+|+||+||+|+..+.. ....||+| ++++||||++++++|.. +++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~ 100 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SEG 100 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SSS
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEc----CCC
Confidence 45788899999999999999975432 33468888 57899999999998754 256
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.++++.. ...+++.++..++.|+++||+|||
T Consensus 101 ~~~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~ql~~~l~~lH 145 (298)
T 3f66_A 101 SPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYLA 145 (298)
T ss_dssp CCEEEEECCTTCBHHHHHHCT---TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999754 245899999999999999999998
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=135.11 Aligned_cols=100 Identities=34% Similarity=0.499 Sum_probs=82.9
Q ss_pred ccccccceeccCCceeEEEEEECC--CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH--DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~--~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
..|+..+.||+|+||.||+|++.. ...++.|||| +.++||||+++++++.. .+.
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 97 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE---DGG 97 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEec---CCC
Confidence 348888999999999999999632 2245689999 47899999999999875 123
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++||||+++|+|.++++... ..+++.++..++.|+++||+|||
T Consensus 98 ~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~i~~~l~~lH 143 (302)
T 4e5w_A 98 NGIKLIMEFLPSGSLKEYLPKNK---NKINLKQQLKYAVQICKGMDYLG 143 (302)
T ss_dssp CCEEEEEECCTTCBHHHHHHHHT---TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCcHHHHHHhcc---ccCCHHHHHHHHHHHHHHHHHhh
Confidence 66899999999999999996432 45899999999999999999998
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=144.91 Aligned_cols=95 Identities=24% Similarity=0.357 Sum_probs=84.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+.|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. .
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~ 98 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQ--ECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED-----K 98 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----S
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCC--EEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----C
Confidence 468899999999999999999765444 89999 56899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.+++..+ ..+++.++..|+.|+++||+|||
T Consensus 99 ~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH 143 (484)
T 3nyv_A 99 GYFYLVGEVYTGGELFDEIISR----KRFSEVDAARIIRQVLSGITYMH 143 (484)
T ss_dssp SEEEEEECCCCSCBHHHHHHTC----SCCBHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999754 45899999999999999999998
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=136.10 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=84.3
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
..+.|+..+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. ++
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~--~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 89 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGA--LAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYH-----DG 89 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCC--EEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----C-
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCc--EEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeee-----CC
Confidence 34578999999999999999999765444 89999 46799999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||++|+|.+++... ...+++.++..++.|+++||+|||
T Consensus 90 ~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH 134 (302)
T 2j7t_A 90 KLWIMIEFCPGGAVDAIMLEL---DRGLTEPQIQVVCRQMLEALNFLH 134 (302)
T ss_dssp CEEEEEECCTTEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCcHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999998743 245899999999999999999998
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-12 Score=136.27 Aligned_cols=96 Identities=24% Similarity=0.379 Sum_probs=83.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------------cCCCCcceeeEeeeeec
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------RSIRHRNLVKIITSCAS 754 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------~~l~H~niv~l~~~~~~ 754 (809)
.++|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~ 100 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNK--EVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN 100 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTE--EEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCc--EEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence 4579999999999999999999665544 89999 35789999999999765
Q ss_pred cccCCCceEEEEEeccCCC-ChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNG-SLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~G-sL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++| +|.+++... ..+++..+..|+.|+++||+|||
T Consensus 101 -----~~~~~lv~e~~~~g~~l~~~~~~~----~~l~~~~~~~i~~qi~~~L~~LH 147 (335)
T 3dls_A 101 -----QGFFQLVMEKHGSGLDLFAFIDRH----PRLDEPLASYIFRQLVSAVGYLR 147 (335)
T ss_dssp -----SSEEEEEEECCTTSCBHHHHHHTC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCEEEEEEEeCCCCccHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999887 999999854 35899999999999999999998
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-12 Score=135.62 Aligned_cols=102 Identities=25% Similarity=0.461 Sum_probs=84.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeecccc----------
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDF---------- 757 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~---------- 757 (809)
.+|+..+.||+|+||.||+|+....+. .||+| +.++||||+++++++....+
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (284)
T 2a19_B 11 MDFKEIELIGSGGFGQVFKAKHRIDGK--TYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSS 88 (284)
T ss_dssp HHEEEEEEEECSSSCCEEEEEETTTCC--EEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------
T ss_pred cccceeeeeccCCceEEEEEEEcCCCe--EEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccccc
Confidence 468899999999999999999765444 89999 56899999999998754211
Q ss_pred -CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 -QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 -~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
......++||||+++|+|.++++.+. ...+++..+..++.|+++||+|||
T Consensus 89 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH 139 (284)
T 2a19_B 89 RSKTKCLFIQMEFCDKGTLEQWIEKRR--GEKLDKVLALELFEQITKGVDYIH 139 (284)
T ss_dssp CCEEEEEEEEECCCCSCBHHHHHHHGG--GSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEEEEeccCCCCHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12455899999999999999997542 245899999999999999999998
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=135.89 Aligned_cols=96 Identities=21% Similarity=0.275 Sum_probs=84.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|...+.||+|+||.||+|+....+ +.|||| +.++||||+++++++..
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~----- 105 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRE--RIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI----- 105 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTT--EEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCC--eEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEee-----
Confidence 467999999999999999999976544 489999 57899999999999876
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+||||+++|+|.++++.. ..+++.++..++.|+++||+|||
T Consensus 106 ~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~lH 151 (309)
T 2h34_A 106 DGQLYVDMRLINGVDLAAMLRRQ----GPLAPPRAVAIVRQIGSALDAAH 151 (309)
T ss_dssp TTEEEEEEECCCCEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999743 35899999999999999999998
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=138.22 Aligned_cols=110 Identities=24% Similarity=0.445 Sum_probs=89.9
Q ss_pred cHHHHHHhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEee
Q 040849 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIIT 750 (809)
Q Consensus 695 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~ 750 (809)
..+++....++|+..+.||+|+||.||+|+... ...++.|||| +.++||||+++++
T Consensus 16 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~ 95 (322)
T 1p4o_A 16 VPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLG 95 (322)
T ss_dssp CCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred ChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEE
Confidence 344555667789999999999999999998652 1245689999 5789999999999
Q ss_pred eeeccccCCCceEEEEEeccCCCChhhhhcCCC------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 751 SCASVDFQGNDFKALVYEFMVNGSLEEWLHPKP------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 751 ~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.. ++..++|||||++|+|.++++..+ .....+++.++..++.|+++||+|||
T Consensus 96 ~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH 155 (322)
T 1p4o_A 96 VVSQ-----GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN 155 (322)
T ss_dssp EECS-----SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcc-----CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 9765 677899999999999999997421 11245789999999999999999998
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-12 Score=134.22 Aligned_cols=95 Identities=31% Similarity=0.437 Sum_probs=83.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.+.|...+.||+|+||.||+|+....+. .|||| +.++||||+++++++.. +.
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 93 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQK--VVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DT 93 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TT
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCc--EEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CC
Confidence 3468889999999999999999655444 89999 46799999999999876 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.+++.. ..+++.++..++.|+++||+|||
T Consensus 94 ~~~lv~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 136 (303)
T 3a7i_A 94 KLWIIMEYLGGGSALDLLEP-----GPLDETQIATILREILKGLDYLH 136 (303)
T ss_dssp EEEEEEECCTTEEHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCcHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999964 34899999999999999999998
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=145.84 Aligned_cols=95 Identities=23% Similarity=0.344 Sum_probs=84.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
+.|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ..
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~ 94 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQ--EYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-----SS 94 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCC--EEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCC--EEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEc-----CC
Confidence 468999999999999999999765444 89999 46899999999999765 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||++|+|.+++..+ ..+++.++..|+.|+++||+|||
T Consensus 95 ~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~i~~qi~~al~~lH 138 (486)
T 3mwu_A 95 SFYIVGELYTGGELFDEIIKR----KRFSEHDAARIIKQVFSGITYMH 138 (486)
T ss_dssp EEEEEECCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998743 35899999999999999999998
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-12 Score=135.43 Aligned_cols=95 Identities=24% Similarity=0.368 Sum_probs=81.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||+||+|+..+ ++.|||| +.++|||||++++++.. +
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~ 91 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQ---GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHS-----E 91 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETT---SCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECC-----S
T ss_pred HhhhHhhhhccCCCCeEEEEEEECC---CCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEcc-----C
Confidence 4679999999999999999999754 3389999 46799999999999764 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++|||||++ +|.+++.... ..+++.++..++.|+++||+|||
T Consensus 92 ~~~~lv~e~~~~-~l~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~LH 136 (311)
T 3niz_A 92 RCLTLVFEFMEK-DLKKVLDENK---TGLQDSQIKIYLYQLLRGVAHCH 136 (311)
T ss_dssp SCEEEEEECCSE-EHHHHHHTCT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCC-CHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999984 8888887542 45899999999999999999998
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=134.80 Aligned_cols=101 Identities=20% Similarity=0.359 Sum_probs=83.8
Q ss_pred cccccc-ceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 704 DGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 704 ~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
++|... +.||+|+||.||+|.....+. .|||| +..+||||+++++++... ..++...++|
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~~~lv 93 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQE--KFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKCLLIV 93 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCc--EEEEEEecccHHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCceEEEE
Confidence 456666 789999999999999765444 89999 456899999999987541 2235678999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||++|+|.+++..+. ...+++.++..++.|++.||+|||
T Consensus 94 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH 134 (299)
T 3m2w_A 94 MECLDGGELFSRIQDRG--DQAFTEREASEIMKSIGEAIQYLH 134 (299)
T ss_dssp ECCCCSCBHHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998643 246899999999999999999998
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=137.57 Aligned_cols=95 Identities=25% Similarity=0.425 Sum_probs=82.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCC-CCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSI-RHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l-~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
++|+..+.||+|+||+||+|+....+ +.|||| +.+ +||||+++++++.. ++..+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-----~~~~~ 81 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTN--EYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPC-----GKYNA 81 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTT--EEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEE-----TTEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCC--cEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEec-----CCccE
Confidence 57999999999999999999965543 489999 345 89999999999765 67899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+ +|+|.+++... ...+++.++..|+.|+++||+|||
T Consensus 82 lv~e~~-~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH 122 (330)
T 2izr_A 82 MVLELL-GPSLEDLFDLC---DRTFSLKTVLMIAIQLISRMEYVH 122 (330)
T ss_dssp EEEECC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC-CCCHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999854 245999999999999999999998
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=137.14 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=89.4
Q ss_pred cHHHHHHhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCC-CCcceeeEe
Q 040849 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSI-RHRNLVKII 749 (809)
Q Consensus 695 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l-~H~niv~l~ 749 (809)
...++....++|...+.||+|+||+||+|+... ...++.|||| +.+ +||||++++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 344555667889999999999999999998532 2355689999 234 799999999
Q ss_pred eeeeccccCCCceEEEEEeccCCCChhhhhcCCCCC------------CCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEA------------PRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 750 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~------------~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++.. .+...++|||||++|+|.+++...... ...+++.++..++.|+++||+|||
T Consensus 98 ~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH 165 (316)
T 2xir_A 98 GACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA 165 (316)
T ss_dssp EEECC----TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEec----CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99764 245689999999999999999865321 123889999999999999999998
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-12 Score=134.93 Aligned_cols=102 Identities=23% Similarity=0.357 Sum_probs=84.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccc-------
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVD------- 756 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~------- 756 (809)
.++|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSR--YYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCe--EEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 3568999999999999999999765444 89999 5789999999999875421
Q ss_pred -cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 -FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 -~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+....|+||||+++|+|.++++... ..+++.++..++.|+++||+|||
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~~l~~LH 133 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHSEN---LNQQRDEYWRLFRQILEALSYIH 133 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHHSC---GGGCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCceEEEEecCCCCCHHHhhhccc---cccchHHHHHHHHHHHHHHHHHH
Confidence 123467899999999999999997432 45788999999999999999998
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-12 Score=137.06 Aligned_cols=102 Identities=21% Similarity=0.351 Sum_probs=84.2
Q ss_pred ccccccc-ceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 703 TDGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 703 ~~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
.++|... ++||+|+||+||+|.....+. .|||| +.++||||+++++++... ..++...++
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~~~l 103 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQ--KCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENM-HHGKRCLLI 103 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCC--EEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhc-cCCCceEEE
Confidence 4578875 469999999999999765444 89999 467899999999997642 122456899
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|.+++..+. ...+++.++..++.|+++||+|||
T Consensus 104 v~e~~~gg~L~~~l~~~~--~~~l~~~~~~~i~~ql~~~l~~LH 145 (336)
T 3fhr_A 104 IMECMEGGELFSRIQERG--DQAFTEREAAEIMRDIGTAIQFLH 145 (336)
T ss_dssp EEECCTTEEHHHHHHTC---CCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998653 246999999999999999999998
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-12 Score=136.13 Aligned_cols=97 Identities=21% Similarity=0.452 Sum_probs=84.2
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
...++|+..+.||+|+||+||+|+....+ +.|||| +.++|||||++++++..
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---- 104 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTN--ETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHH---- 104 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTT--EEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEE----
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCC--ceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEec----
Confidence 44567999999999999999999966544 489999 46899999999999876
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||+ |+|.+++... ..+++.++..|+.|+++||+|||
T Consensus 105 -~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~i~~ql~~~l~~LH 149 (329)
T 3gbz_A 105 -NHRLHLIFEYAE-NDLKKYMDKN----PDVSMRVIKSFLYQLINGVNFCH 149 (329)
T ss_dssp -TTEEEEEEECCS-EEHHHHHHHC----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEecCC-CCHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 778999999998 5999999754 34899999999999999999998
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=136.74 Aligned_cols=100 Identities=24% Similarity=0.377 Sum_probs=84.8
Q ss_pred ccccccceeccCCceeEEEEEEC--CCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILN--HDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~--~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||.||+|++. +...++.|||| +.++||||+++++++.. ++..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~~ 99 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG---PGRQ 99 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC---SSSC
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec---CCCc
Confidence 56889999999999999999963 12245689999 57899999999998764 2366
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.+++...+ ..+++.++..|+.|+++||+|||
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~al~~lH 144 (327)
T 3lxl_A 100 SLRLVMEYLPSGCLRDFLQRHR---ARLDASRLLLYSSQICKGMEYLG 144 (327)
T ss_dssp EEEEEEECCTTCBHHHHHHHHG---GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeecCCCCHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999997532 34899999999999999999998
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=132.53 Aligned_cols=94 Identities=23% Similarity=0.382 Sum_probs=81.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+... ++.|||| +.++|||||++++++.. ++
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 73 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNY---GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-----KK 73 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETT---SCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-----SS
T ss_pred ccchhhhhcccCCCEEEEEEEcCC---CCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEcc-----CC
Confidence 468899999999999999999633 3379999 56899999999999765 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++ +|.+++.... ..+++.++..++.|+++||+|||
T Consensus 74 ~~~lv~e~~~~-~l~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH 117 (288)
T 1ob3_A 74 RLVLVFEHLDQ-DLKKLLDVCE---GGLESVTAKSFLLQLLNGIAYCH 117 (288)
T ss_dssp CEEEEEECCSE-EHHHHHHTST---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCC-CHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999985 9999987542 45899999999999999999998
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=9.6e-13 Score=136.43 Aligned_cols=100 Identities=27% Similarity=0.479 Sum_probs=84.1
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCC
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
+....++|+..+.||+|+||.||+|+..++ +.|||| +.++||||+++++++.
T Consensus 8 ~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------ 78 (279)
T 1qpc_A 8 WEVPRETLKLVERLGAGQFGEVWMGYYNGH---TKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT------ 78 (279)
T ss_dssp TBCCGGGEEEEEEEEEETTEEEEEEEETTT---EEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC------
T ss_pred cccCHHhhhheeeecCCCCeEEEEEEEcCC---cEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEc------
Confidence 334456799999999999999999997543 379999 4689999999999864
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.+++.... ...+++.++..++.|+++||+|||
T Consensus 79 ~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH 126 (279)
T 1qpc_A 79 QEPIYIITEYMENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIE 126 (279)
T ss_dssp SSSCEEEEECCTTCBHHHHTTSHH--HHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999997431 125899999999999999999998
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-12 Score=134.12 Aligned_cols=102 Identities=27% Similarity=0.457 Sum_probs=81.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------------cCCCCcceeeEeeeeec
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------RSIRHRNLVKIITSCAS 754 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------~~l~H~niv~l~~~~~~ 754 (809)
.++|+..+.||+|+||+||+|+.... ++.|||| +.++|||||+++++|..
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~ 85 (308)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKARDPHS--GHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT 85 (308)
T ss_dssp --CCEEEEEECCSSSCCEEEEECTTT--CCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred ccceEEEEEEecCCCeEEEEEEECCC--CcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence 56799999999999999999995544 4489999 12359999999999876
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.........++||||++ |+|.+++.... ...+++.++..|+.|+++||+|||
T Consensus 86 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH 137 (308)
T 3g33_A 86 SRTDREIKVTLVFEHVD-QDLRTYLDKAP--PPGLPAETIKDLMRQFLRGLDFLH 137 (308)
T ss_dssp CCSSSEEEEEEEEECCC-CBHHHHHHTCC--TTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceeEEEEehhhh-cCHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 32222235899999997 69999998653 234899999999999999999998
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-12 Score=135.38 Aligned_cols=98 Identities=27% Similarity=0.395 Sum_probs=80.1
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
..+.|+..+.||+|+||.||+|.....+. .|||| +.++||||+++++++.. ++..
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 99 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQ--IVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFK-----NTDL 99 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCC--EEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCC--EEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCEE
Confidence 34679999999999999999999765444 89999 57899999999999876 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.+++..+ ...+++.++..++.|+++||+|||
T Consensus 100 ~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lH 142 (314)
T 3com_A 100 WIVMEYCGAGSVSDIIRLR---NKTLTEDEIATILQSTLKGLEYLH 142 (314)
T ss_dssp EEEEECCTTEEHHHHHHHH---TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999632 245899999999999999999998
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-12 Score=135.66 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=81.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------------cCCCCcceeeEeeeeec
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------RSIRHRNLVKIITSCAS 754 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------~~l~H~niv~l~~~~~~ 754 (809)
.++|...+.||+|+||.||+|+....+ +.|||| +.++||||+++++++..
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 86 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTC--KKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 86 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCC--cEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC
Confidence 356999999999999999999976544 489999 34689999999998753
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 87 ------~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH 131 (322)
T 2ycf_A 87 ------EDYYIVLELMEGGELFDKVVGN----KRLKEATCKLYFYQMLLAVQYLH 131 (322)
T ss_dssp ------SSEEEEEECCTTEETHHHHSTT----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------CceEEEEecCCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999743 45899999999999999999998
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-13 Score=150.13 Aligned_cols=102 Identities=28% Similarity=0.480 Sum_probs=86.1
Q ss_pred HHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeecccc
Q 040849 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 697 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
+++....++|+..+.||+|+||+||+|++..+ . .|||| +.++|||||++++++.
T Consensus 260 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~--~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~---- 332 (535)
T 2h8h_A 260 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-T--RVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS---- 332 (535)
T ss_dssp TCSBCCGGGEEEEEEEEECSSEEEEEEEETTT-E--EEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred cceecchhhhhhheecccCCCeEEEEEEECCC-c--eEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEe----
Confidence 34445567799999999999999999997653 3 69999 5689999999999875
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|||||||++|+|.++++... ...+++.++..|+.||++||+|||
T Consensus 333 --~~~~~lv~e~~~~gsL~~~l~~~~--~~~l~~~~~~~i~~qi~~~L~~LH 380 (535)
T 2h8h_A 333 --EEPIYIVTEYMSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVE 380 (535)
T ss_dssp --SSSCEEEECCCTTEEHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --eccceEeeehhcCCcHHHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999997431 235899999999999999999998
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-12 Score=134.74 Aligned_cols=95 Identities=24% Similarity=0.364 Sum_probs=83.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+.|...+.||+|+||+||+|+....+. .||+| +.++||||+++++++.. ++..
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 81 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGK--LFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYES-----TTHY 81 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEEC-----SSEE
T ss_pred ccceeeeeccCCCCceEEEEEECCCCC--EEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhccc-----CCEE
Confidence 568899999999999999999765444 89999 46799999999999765 6789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 82 ~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 123 (304)
T 2jam_A 82 YLVMQLVSGGELFDRILER----GVYTEKDASLVIQQVLSAVKYLH 123 (304)
T ss_dssp EEEECCCCSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743 35899999999999999999998
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-12 Score=133.73 Aligned_cols=96 Identities=30% Similarity=0.479 Sum_probs=81.4
Q ss_pred ccccceeccCCceeEEEEEECC--CCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 706 FSLENLIGAGSFGSVYKGILNH--DDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~--~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
|+..+.||+|+||+||++.+.. ...++.|||| +.++||||+++++++... +...
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~ 109 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDA---GAAS 109 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET---TTTE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecC---CCce
Confidence 4888999999999999987642 2245689999 468999999999998752 2467
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++... .+++.++..++.|++.||+|||
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~i~~~l~~~l~~LH 151 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRH-----SIGLAQLLLFAQQICEGMAYLH 151 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGS-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCcHHHHHhhC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999753 3899999999999999999998
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-12 Score=133.33 Aligned_cols=99 Identities=25% Similarity=0.499 Sum_probs=83.4
Q ss_pred hcccccccceeccCCceeEEEEEECCC-CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
..++|...+.||+|+||+||+|+.... +.+..|||| +.++||||+++++++.
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------ 83 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE------ 83 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEEC------
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEc------
Confidence 346789999999999999999987543 345579999 4578999999999864
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++..+ ..+++.++..++.|+++||+|||
T Consensus 84 ~~~~~~v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~i~~~l~~lH 130 (281)
T 3cc6_A 84 EEPTWIIMELYPYGELGHYLERNK---NSLKVLTLVLYSLQICKAMAYLE 130 (281)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHHT---TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCCCHHHHHHhcc---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999997532 45899999999999999999998
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-12 Score=142.90 Aligned_cols=100 Identities=21% Similarity=0.377 Sum_probs=77.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||+||+|..... ++.|||| +.++|||||++++++.....++.
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 129 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLE--KRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKF 129 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC----CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCC--CcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccC
Confidence 36799999999999999999996654 3489999 46799999999999866444555
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...|+|||||+ |+|.++++.. ..+++.++..|+.||++||+|||
T Consensus 130 ~~~~lv~e~~~-~~L~~~~~~~----~~l~~~~~~~~~~qi~~aL~~LH 173 (458)
T 3rp9_A 130 DELYVVLEIAD-SDFKKLFRTP----VYLTELHIKTLLYNLLVGVKYVH 173 (458)
T ss_dssp CCEEEEECCCS-EEHHHHHHSS----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeccc-cchhhhcccC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77999999985 7999999743 45899999999999999999998
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-12 Score=137.79 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=81.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+.|...+.||+|+||+||+|+....+ +.|||| +.++|||||++++++.. +
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~ 126 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNS--EVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----E 126 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----T
T ss_pred hheeeeeEEccCCCEEEEEEEEccCC--eEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----C
Confidence 44888899999999999999965543 489999 46799999999999876 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++|||||+ |++.+++... ...+++.++..++.|+++||+|||
T Consensus 127 ~~~~lv~e~~~-g~l~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH 171 (348)
T 1u5q_A 127 HTAWLVMEYCL-GSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYLH 171 (348)
T ss_dssp TEEEEEEECCS-EEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCC-CCHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999997 6888888633 245899999999999999999998
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-12 Score=136.28 Aligned_cols=97 Identities=25% Similarity=0.489 Sum_probs=81.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCc--eeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. ...||+| +.++|||||+++++|..
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------ 88 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------ 88 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES------
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec------
Confidence 568899999999999999999754432 2246888 46899999999999874
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.++++.++ ..+++.++..|+.|+++||+|||
T Consensus 89 ~~~~~v~e~~~~g~L~~~l~~~~---~~~~~~~~~~~~~qi~~~l~~LH 134 (327)
T 3poz_A 89 STVQLITQLMPFGCLLDYVREHK---DNIGSQYLLNWCVQIAKGMNYLE 134 (327)
T ss_dssp SSEEEEEECCTTCBHHHHHHHST---TSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999998543 45899999999999999999998
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=134.49 Aligned_cols=100 Identities=28% Similarity=0.494 Sum_probs=82.8
Q ss_pred ccccccceeccCCceeEEEEEECC--CCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH--DDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~--~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||.||+|++.. ...++.|||| +.++||||+++++++... +..
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~ 117 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---GRR 117 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC-------
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEec---CCC
Confidence 468889999999999999998631 2245689999 578999999999987641 234
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+++|+|.++++..+ ..+++.++..++.|+++||+|||
T Consensus 118 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~aL~~LH 162 (326)
T 2w1i_A 118 NLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGMEYLG 162 (326)
T ss_dssp CCEEEECCCTTCBHHHHHHHST---TSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998542 45899999999999999999998
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.8e-12 Score=134.43 Aligned_cols=106 Identities=15% Similarity=0.220 Sum_probs=85.8
Q ss_pred cHHHHHHhccccccc-ceeccCCceeEEEEEECCCCceeEEEEe----------------------cCC-CCcceeeEee
Q 040849 695 SYQNLFKATDGFSLE-NLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSI-RHRNLVKIIT 750 (809)
Q Consensus 695 ~~~~~~~~~~~~~~~-~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l-~H~niv~l~~ 750 (809)
.+.....-.+.|... +.||+|+||+||+|.....+. .|||| +.+ +||||+++++
T Consensus 19 ~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~ 96 (327)
T 3lm5_A 19 YFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQ--EYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96 (327)
T ss_dssp CSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEE
T ss_pred HHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCC--EEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 333444444557766 889999999999999765544 89999 223 6799999999
Q ss_pred eeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 751 SCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 751 ~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.. ++..++|||||++|+|.+++.... ...+++.++..|+.|+++||+|||
T Consensus 97 ~~~~-----~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~ql~~~L~~LH 148 (327)
T 3lm5_A 97 VYEN-----TSEIILILEYAAGGEIFSLCLPEL--AEMVSENDVIRLIKQILEGVYYLH 148 (327)
T ss_dssp EEEC-----SSEEEEEEECCTTEEGGGGGSSCC---CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEe-----CCeEEEEEEecCCCcHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9765 778999999999999999997542 356899999999999999999998
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=136.96 Aligned_cols=110 Identities=28% Similarity=0.480 Sum_probs=79.9
Q ss_pred HHhcccccccceeccCCceeEEEEEECCCCc-eeEEEEe----------------------cCCCCcceeeEeeeeeccc
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDH-ETLVAVK----------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~-~~~vavK----------------------~~l~H~niv~l~~~~~~~~ 756 (809)
....++|+..+.||+|+||+||+|+....+. ...|||| +.++|||||++++++....
T Consensus 19 ~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 98 (323)
T 3qup_A 19 LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR 98 (323)
T ss_dssp BCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred ccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence 3445679999999999999999999654321 1268999 5789999999999986521
Q ss_pred cCC-CceEEEEEeccCCCChhhhhcCCC--CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQG-NDFKALVYEFMVNGSLEEWLHPKP--EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~-~~~~~lv~Ey~~~GsL~~~l~~~~--~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+ ....++||||+++|+|.+++...+ .....+++.++..|+.|+++||+|||
T Consensus 99 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH 154 (323)
T 3qup_A 99 AKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS 154 (323)
T ss_dssp ------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 110 112499999999999999996432 12235899999999999999999998
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=147.55 Aligned_cols=90 Identities=27% Similarity=0.458 Sum_probs=78.9
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
+.||+|+||+||+|.+.....++.|||| +.++|||||+++++|. .+..++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~------~~~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE------AESWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE------SSSEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe------cCCEEEEE
Confidence 5799999999999987666566789999 4679999999999985 34589999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||++|+|.++++.. ..+++.++..|+.||++||+|||
T Consensus 449 E~~~~g~L~~~l~~~----~~l~~~~~~~i~~qi~~~L~yLH 486 (635)
T 4fl3_A 449 EMAELGPLNKYLQQN----RHVKDKNIIELVHQVSMGMKYLE 486 (635)
T ss_dssp ECCTTEEHHHHHHHC----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHhhC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999743 45899999999999999999998
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-12 Score=135.80 Aligned_cols=96 Identities=23% Similarity=0.403 Sum_probs=84.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++.. .
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~ 96 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGR--IVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK-----K 96 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCC--EEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----T
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCc--eEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec-----C
Confidence 3578999999999999999999765444 89999 46899999999999876 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 97 ~~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~qi~~~l~~LH 141 (331)
T 4aaa_A 97 KRWYLVFEFVDHTILDDLELFP----NGLDYQVVQKYLFQIINGIGFCH 141 (331)
T ss_dssp TEEEEEEECCSEEHHHHHHHST----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCcchHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999887643 34899999999999999999998
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-12 Score=135.77 Aligned_cols=100 Identities=26% Similarity=0.423 Sum_probs=85.7
Q ss_pred HHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeec
Q 040849 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCAS 754 (809)
Q Consensus 697 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~ 754 (809)
.++....++|+..+.||+|+||.||+|+..+ .||+| +.++||||+++++++..
T Consensus 26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~-----~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~ 100 (319)
T 2y4i_B 26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG-----EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS 100 (319)
T ss_dssp GGSSSCCSCEECCCBCCCSSSSEEEEEEESS-----SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEEC
T ss_pred ccccCCHHHeEEeeEeccCCceEEEEEEEcC-----eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEec
Confidence 4444556789999999999999999999643 37777 46789999999999875
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||+++|+|.++++..+ ..+++.++..++.|+++||+|||
T Consensus 101 -----~~~~~iv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~al~~lH 147 (319)
T 2y4i_B 101 -----PPHLAIITSLCKGRTLYSVVRDAK---IVLDVNKTRQIAQEIVKGMGYLH 147 (319)
T ss_dssp -----SSCEEEECBCCCSEEHHHHTTSSC---CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred -----CCceEEEeecccCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999997542 45899999999999999999998
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.28 E-value=5e-10 Score=122.06 Aligned_cols=113 Identities=9% Similarity=0.015 Sum_probs=67.3
Q ss_pred cccCCccccCCC-cCcEEEcccCCCCCCCcccccCCCCCCEEEccccc---CcccCCccCCCCCCCCEEEcccCcccccC
Q 040849 136 GGQIPDNISHCV-NLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNN---LSGQIPSSFGNLSSLEVLSASANQFVGQI 211 (809)
Q Consensus 136 ~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 211 (809)
+.+-..+|.+++ .|+.+.+..+ ++.....+|.++++|+.+.+..|. ++......|.++.+|+.+.+..+ ++...
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 334455677774 5888888653 666667778888888888887764 55444566777777777666543 44344
Q ss_pred cccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccC
Q 040849 212 PKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251 (809)
Q Consensus 212 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 251 (809)
...|..+.+|+.+.+..+ +.......|..+..|+.+.+.
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred hhhhhhhcccccccccce-eeeecccceeccccccccccc
Confidence 455666666666666432 222223334444444444443
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-12 Score=138.05 Aligned_cols=112 Identities=25% Similarity=0.340 Sum_probs=89.3
Q ss_pred ccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCC-CCcceeeEeeeee
Q 040849 694 VSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSI-RHRNLVKIITSCA 753 (809)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l-~H~niv~l~~~~~ 753 (809)
+++.++....+.|+..+.||+|+||.||+|+....+. .|||| +++ +||||+++++++.
T Consensus 14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 91 (326)
T 2x7f_A 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQ--LAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFI 91 (326)
T ss_dssp --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEE
T ss_pred ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCC--eEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEe
Confidence 4444555667889999999999999999999765444 89999 234 8999999999986
Q ss_pred cccc-CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDF-QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~-~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.... ...+..++||||+++|+|.+++.... ...+++..+..++.|++.||+|||
T Consensus 92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH 146 (326)
T 2x7f_A 92 KKNPPGMDDQLWLVMEFCGAGSVTDLIKNTK--GNTLKEEWIAYICREILRGLSHLH 146 (326)
T ss_dssp ECC--CCCCEEEEEEECCTTEEHHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eccCccccceEEEEEEcCCCCcHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5211 11457899999999999999997542 245899999999999999999998
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.9e-12 Score=139.78 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=85.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|...+.||+|+||+||+|+....+ +.|||| +.++|||||++++++....+.+.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~--~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 102 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTE--KNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKF 102 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTT--EEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCC--cEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcC
Confidence 467999999999999999999976544 489999 46799999999999876433333
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...|+|||||+ |+|.++++.. ..+++.++..|+.||++||+|||
T Consensus 103 ~~~~lv~e~~~-~~L~~~~~~~----~~l~~~~~~~i~~qil~aL~~LH 146 (432)
T 3n9x_A 103 DELYIVLEIAD-SDLKKLFKTP----IFLTEEHIKTILYNLLLGENFIH 146 (432)
T ss_dssp CCEEEEEECCS-EEHHHHHHSS----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCC-cCHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67999999997 5999999743 45899999999999999999998
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=139.74 Aligned_cols=107 Identities=22% Similarity=0.363 Sum_probs=86.7
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECCCC---ceeEEEEe---------------------cCC-CCcceeeEeeee
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDD---HETLVAVK---------------------RSI-RHRNLVKIITSC 752 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~---~~~~vavK---------------------~~l-~H~niv~l~~~~ 752 (809)
++....++|...+.||+|+||+||+|+....+ ..+.||+| +.+ +|||||++++++
T Consensus 40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~ 119 (333)
T 2i1m_A 40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC 119 (333)
T ss_dssp GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 34445678999999999999999999975432 22479999 345 899999999997
Q ss_pred eccccCCCceEEEEEeccCCCChhhhhcCCCC----------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 753 ASVDFQGNDFKALVYEFMVNGSLEEWLHPKPE----------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 753 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~----------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.. ++..++|||||++|+|.+++..... ....+++.++..++.|+++||+|||
T Consensus 120 ~~-----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH 181 (333)
T 2i1m_A 120 TH-----GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA 181 (333)
T ss_dssp CS-----SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ec-----CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh
Confidence 65 6779999999999999999974310 1245899999999999999999998
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-12 Score=136.76 Aligned_cols=98 Identities=21% Similarity=0.313 Sum_probs=83.2
Q ss_pred cccccccceeccCCceeEEEEEECC-CCceeEEEEe------------------------cCC-CCcceeeEeeeeeccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVK------------------------RSI-RHRNLVKIITSCASVD 756 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~-~~~~~~vavK------------------------~~l-~H~niv~l~~~~~~~~ 756 (809)
.++|+..+.||+|+||+||+|+... ...++.|||| +.+ +||||+++++++..
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-- 130 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT-- 130 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE--
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEee--
Confidence 3579999999999999999999742 1234589999 123 69999999999765
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.+++..+ ..+++.++..++.||++||+|||
T Consensus 131 ---~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 176 (355)
T 1vzo_A 131 ---ETKLHLILDYINGGELFTHLSQR----ERFTEHEVQIYVGEIVLALEHLH 176 (355)
T ss_dssp ---TTEEEEEECCCCSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CceEEEEeecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999753 35899999999999999999998
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-10 Score=120.76 Aligned_cols=115 Identities=8% Similarity=0.041 Sum_probs=82.9
Q ss_pred CccCCccccccc-cCCccccCCCcCcccCCccccCCCcCcEEEcccCC---CCCCCcccccCCCCCCEEEcccccCcccC
Q 040849 112 RNEIPQEIGYLF-RLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNE---LVGKVPRKLGSLSKLRTLAVHYNNLSGQI 187 (809)
Q Consensus 112 ~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 187 (809)
+.+-..+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++.....+|..+.+|+.+.+..+ ++...
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 334455677764 5888888754 665667788999999999888764 55555677888888888877654 55455
Q ss_pred CccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecC
Q 040849 188 PSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVN 229 (809)
Q Consensus 188 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 229 (809)
...|.++.+|+.+.+..+ +.......|..+.+|+.+.+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhcccccccccce-eeeecccceecccccccccccce
Confidence 667888889999988644 44455567888888888887654
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.6e-12 Score=131.87 Aligned_cols=96 Identities=23% Similarity=0.343 Sum_probs=84.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||+||+|+....+. .|||| ++++||||+++++++.. .
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~--~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 93 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQ--EYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-----S 93 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----S
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCc--EEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeC-----C
Confidence 3579999999999999999999765434 89999 47899999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 94 ~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~LH 138 (287)
T 2wei_A 94 SSFYIVGELYTGGELFDEIIKR----KRFSEHDAARIIKQVFSGITYMH 138 (287)
T ss_dssp SEEEEEECCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEccCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999988743 35899999999999999999998
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-12 Score=132.58 Aligned_cols=96 Identities=23% Similarity=0.347 Sum_probs=83.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------------cCC-CCcceeeEeeee
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------------RSI-RHRNLVKIITSC 752 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------------~~l-~H~niv~l~~~~ 752 (809)
.++|+..+.||+|+||.||+|.....+ +.|||| +++ +||||+++++++
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 93 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTC--KEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 93 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhccceeeeecCCCceEEEEEEEcCcC--ceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence 467999999999999999999976544 489999 123 499999999997
Q ss_pred eccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 753 ASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 753 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.. ++..++||||+++|+|.+++..+ ..+++.++..++.|+++||+|||
T Consensus 94 ~~-----~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 141 (298)
T 1phk_A 94 ET-----NTFFFLVFDLMKKGELFDYLTEK----VTLSEKETRKIMRALLEVICALH 141 (298)
T ss_dssp EC-----SSEEEEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cc-----CCeEEEEEeccCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 65 77899999999999999999743 35899999999999999999998
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-12 Score=134.10 Aligned_cols=98 Identities=29% Similarity=0.393 Sum_probs=82.1
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
..++|...+.||+|+||+||+|+.. ++.|||| ..++||||+++++++.... .....
T Consensus 40 ~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~-~~~~~ 114 (342)
T 1b6c_B 40 IARTIVLQESIGKGRFGEVWRGKWR----GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQ 114 (342)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET----TEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC-SSCCC
T ss_pred ccccEEEEeeecCCCCcEEEEEEEc----CccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC-Cccce
Confidence 3467999999999999999999963 2389999 2389999999999986521 01137
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.+++++. .+++.++..++.|+++||+|||
T Consensus 115 ~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~i~~~i~~~l~~lH 156 (342)
T 1b6c_B 115 LWLVSDYHEHGSLFDYLNRY-----TVTVEGMIKLALSTASGLAHLH 156 (342)
T ss_dssp EEEEECCCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCCCcHHHHHhcc-----CccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999743 4899999999999999999998
|
| >2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=7.7e-12 Score=130.99 Aligned_cols=96 Identities=25% Similarity=0.432 Sum_probs=83.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+....+. .|||| ++++||||+++++++.. ++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 75 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGE--VVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----EN 75 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TT
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCc--eEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEec-----CC
Confidence 578899999999999999999765444 89999 57899999999999876 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||++ |+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 76 ~~~lv~e~~~-~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH 120 (299)
T 2r3i_A 76 KLYLVFEFLH-QDLKKFMDASA--LTGIPLPLIKSYLFQLLQGLAFCH 120 (299)
T ss_dssp EEEEEEECCS-EEHHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEccc-CCHHHHHHhhh--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999998 69999997542 245889999999999999999998
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-12 Score=131.73 Aligned_cols=95 Identities=33% Similarity=0.472 Sum_probs=80.1
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
...++|+..+.||+|+||+||+|+... .|||| +.++||||+++++++.
T Consensus 21 i~~~~y~~~~~lG~G~~g~Vy~~~~~~-----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 90 (289)
T 3og7_A 21 IPDGQITVGQRIGSGSFGTVYKGKWHG-----DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST----- 90 (289)
T ss_dssp CCTTSCEEEEEEEECSSEEEEEEESSS-----EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred cCccceeeeeEecCCCCeEEEEEEEcC-----ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc-----
Confidence 345679999999999999999998432 48888 5789999999999753
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++|||||++|+|.++++... ..+++.++..++.|+++||+|||
T Consensus 91 -~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~~L~~lH 137 (289)
T 3og7_A 91 -APQLAIVTQWCEGSSLYHHLHASE---TKFEMKKLIDIARQTARGMDYLH 137 (289)
T ss_dssp -SSSCEEEEECCCEEEHHHHHTTC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCccEEEEEecCCCcHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999997542 45899999999999999999998
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-12 Score=131.58 Aligned_cols=98 Identities=24% Similarity=0.479 Sum_probs=81.3
Q ss_pred cccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.|...+.||+|+||+||+|+..+.. .+..||+| +.++|||||++++++.. .+..
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~ 97 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP----PEGL 97 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SSSC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec----CCCC
Confidence 3566789999999999999865432 34469999 46899999999999764 1344
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++||||+++|+|.++++.. ...+++.++..++.|+++||+|||
T Consensus 98 ~~~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH 141 (298)
T 3pls_A 98 PHVLLPYMCHGDLLQFIRSP---QRNPTVKDLISFGLQVARGMEYLA 141 (298)
T ss_dssp CEEEECCCTTCBHHHHHHCT---TCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecccCCCHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999853 245899999999999999999998
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-12 Score=146.56 Aligned_cols=97 Identities=23% Similarity=0.259 Sum_probs=83.8
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cC-CCCcceeeEeeeeecccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RS-IRHRNLVKIITSCASVDF 757 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~-l~H~niv~l~~~~~~~~~ 757 (809)
..++|+..++||+|+||+||+|+....+. .|||| .. .+||+|+++++++..
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~--~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~--- 413 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDE--LYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT--- 413 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCC--EEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBC---
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCc--EEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEe---
Confidence 45679999999999999999999766544 89999 12 379999999998544
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.++++.. ..+++.++..|+.||+.||+|||
T Consensus 414 --~~~~~lV~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH 459 (674)
T 3pfq_A 414 --MDRLYFVMEYVNGGDLMYHIQQV----GRFKEPHAVFYAAEIAIGLFFLQ 459 (674)
T ss_dssp --SSEEEEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEeCcCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999853 35899999999999999999998
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.9e-12 Score=134.07 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=89.3
Q ss_pred cHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------------cCCCCc
Q 040849 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------------RSIRHR 743 (809)
Q Consensus 695 ~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------------~~l~H~ 743 (809)
...++....++|...+.||+|+||.||+|.... ++.|||| +.++||
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 89 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSE---GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHP 89 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTT---SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCC---CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCc
Confidence 456677788999999999999999999998544 3489999 347899
Q ss_pred ceeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 744 niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||++++++...........|+||||++ |+|.+++... ...+++.++..++.|+++||+|||
T Consensus 90 ~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH 151 (362)
T 3pg1_A 90 NILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ---RIVISPQHIQYFMYHILLGLHVLH 151 (362)
T ss_dssp TBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT---TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999986532233457899999998 6888888754 246899999999999999999998
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=130.31 Aligned_cols=99 Identities=25% Similarity=0.445 Sum_probs=80.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|...+.||+|+||.||+|.....+ +.|||| +.++||||+++++++.. +
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~--~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~ 78 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETL--CRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN---E 78 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTC--CEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC---C
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCC--cEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc---C
Confidence 367999999999999999999965443 489998 57899999999999753 2
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+....++|||||++| +.+++.... ...+++.++..++.|+++||+|||
T Consensus 79 ~~~~~~lv~e~~~~~-l~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH 126 (305)
T 2wtk_C 79 EKQKMYMVMEYCVCG-MQEMLDSVP--EKRFPVCQAHGYFCQLIDGLEYLH 126 (305)
T ss_dssp ---CEEEEEECCSEE-HHHHHHHST--TCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEehhccCC-HHHHHHhCc--ccccCHHHHHHHHHHHHHHHHHHH
Confidence 256789999999987 777776432 346899999999999999999998
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.5e-12 Score=135.50 Aligned_cols=98 Identities=27% Similarity=0.421 Sum_probs=84.3
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------------cCC-CCcceeeEeee
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------RSI-RHRNLVKIITS 751 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------~~l-~H~niv~l~~~ 751 (809)
...++|...+.||+|+||.||+|+....+. .|||| +.+ +||||++++++
T Consensus 91 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~--~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 168 (365)
T 2y7j_A 91 EFYQKYDPKDVIGRGVSSVVRRCVHRATGH--EFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS 168 (365)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred hhhhhcccceEEecCCCEEEEEEEECCCCc--EEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 344679999999999999999999765444 89999 123 79999999999
Q ss_pred eeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 752 CASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 752 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.. ....++|||||++|+|.+++... ..+++..+..++.||+.||+|||
T Consensus 169 ~~~-----~~~~~lv~e~~~g~~L~~~l~~~----~~l~~~~~~~i~~qi~~~L~~LH 217 (365)
T 2y7j_A 169 YES-----SSFMFLVFDLMRKGELFDYLTEK----VALSEKETRSIMRSLLEAVSFLH 217 (365)
T ss_dssp EEB-----SSEEEEEECCCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred Eee-----CCEEEEEEEeCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 765 67899999999999999999743 35899999999999999999998
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.6e-12 Score=133.40 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=82.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------------------cCCCCcce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------------------RSIRHRNL 745 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------------------~~l~H~ni 745 (809)
.++|...+.||+|+||.||+|+. . ++.|||| +.++||||
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~--~--~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 105 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK--D--NKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYC 105 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE--T--TEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTB
T ss_pred cCceEEEEEEcCCCCeEEEEEEc--C--CceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCc
Confidence 46799999999999999999997 2 2389998 24789999
Q ss_pred eeEeeeeeccccCCCceEEEEEeccCCCChhhh------hcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEW------LHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 746 v~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~------l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++++++.. ++..++|||||++|+|.++ +... ....+++.++..++.|+++||+|||
T Consensus 106 ~~~~~~~~~-----~~~~~lv~e~~~~~~L~~~~~~~~~l~~~--~~~~~~~~~~~~i~~qi~~~l~~lH 168 (348)
T 2pml_X 106 LTCEGIITN-----YDEVYIIYEYMENDSILKFDEYFFVLDKN--YTCFIPIQVIKCIIKSVLNSFSYIH 168 (348)
T ss_dssp CCCSEEEES-----SSEEEEEEECCTTCBSSEESSSEESSCSS--SCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEee-----CCeEEEEEeccCCCcHHHHHHHhhhhhhc--cccCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999765 6789999999999999999 5432 2356999999999999999999998
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-12 Score=134.70 Aligned_cols=98 Identities=21% Similarity=0.415 Sum_probs=79.5
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeecc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASV 755 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~ 755 (809)
...+.|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~- 83 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQ--IVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH- 83 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCS--EEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC-
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCc--EEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEee-
Confidence 345679999999999999999999655434 89999 35789999999999764
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++|||||++ +|.+++.... ..+++.++..++.|+++||+|||
T Consensus 84 ----~~~~~lv~e~~~~-~l~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH 129 (346)
T 1ua2_A 84 ----KSNISLVFDFMET-DLEVIIKDNS---LVLTPSHIKAYMLMTLQGLEYLH 129 (346)
T ss_dssp ----TTCCEEEEECCSE-EHHHHHTTCC---SSCCSSHHHHHHHHHHHHHHHHH
T ss_pred ----CCceEEEEEcCCC-CHHHHHHhcC---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999986 8998887542 45888999999999999999998
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.7e-12 Score=134.02 Aligned_cols=99 Identities=20% Similarity=0.334 Sum_probs=84.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.++|...+.||+|+||+||+|+....+ +.|||| +.++||||+++++++....+++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTG--EIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCC--cEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 467999999999999999999976543 489999 468999999999998764445557
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||++ |+|.+++.. ..+++.++..++.|+++||+|||
T Consensus 88 ~~~lv~e~~~-~~L~~~~~~-----~~~~~~~~~~~~~qi~~~L~~LH 129 (353)
T 2b9h_A 88 EVYIIQELMQ-TDLHRVIST-----QMLSDDHIQYFIYQTLRAVKVLH 129 (353)
T ss_dssp CEEEEECCCS-EEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeccC-ccHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999997 699999874 24899999999999999999998
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-12 Score=135.34 Aligned_cols=100 Identities=19% Similarity=0.363 Sum_probs=78.0
Q ss_pred ccccccceeccCCceeEEEEEECCC-CceeEEEEe-------------------------------cCCCCcceeeEeee
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK-------------------------------RSIRHRNLVKIITS 751 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK-------------------------------~~l~H~niv~l~~~ 751 (809)
++|...+.||+|+||+||+|+.... ..++.|||| +.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 5799999999999999999997641 133479998 23589999999999
Q ss_pred eeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 752 CASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 752 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+... +.++...|+||||| +|+|.+++... ..+++.++..|+.||++||+|||
T Consensus 117 ~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH 168 (345)
T 2v62_A 117 GLTE-FKGRSYRFMVMERL-GIDLQKISGQN----GTFKKSTVLQLGIRMLDVLEYIH 168 (345)
T ss_dssp EEEE-SSSCEEEEEEEECE-EEEHHHHCBGG----GBCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cCCCcEEEEEEecc-CCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8652 34467899999999 99999999754 25899999999999999999998
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.9e-12 Score=133.13 Aligned_cols=97 Identities=25% Similarity=0.489 Sum_probs=82.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCc--eeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. ...||+| +.++|||||+++++|..
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------ 88 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------ 88 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES------
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec------
Confidence 568999999999999999999755433 1246777 57899999999999864
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++|+||+++|+|.++++... ..+++.++..|+.|+++||+|||
T Consensus 89 ~~~~~v~~~~~~g~L~~~l~~~~---~~~~~~~~~~i~~qi~~aL~~LH 134 (327)
T 3lzb_A 89 STVQLITQLMPFGCLLDYVREHK---DNIGSQYLLNWCVQIAKGMNYLE 134 (327)
T ss_dssp SSEEEEECCCSSCBHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHh
Confidence 34889999999999999998542 45899999999999999999998
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-12 Score=145.61 Aligned_cols=100 Identities=27% Similarity=0.424 Sum_probs=84.4
Q ss_pred HhcccccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
...++|+..+.||+|+||+||+|.+...+ .+..|||| +.++|||||++++++.
T Consensus 387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~----- 461 (656)
T 2j0j_A 387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT----- 461 (656)
T ss_dssp CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----
Confidence 34467888999999999999999976432 34579999 4679999999999874
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.++++.++ ..+++.++..++.|+++||+|||
T Consensus 462 -~~~~~lv~E~~~~g~L~~~l~~~~---~~l~~~~~~~i~~qi~~aL~~LH 508 (656)
T 2j0j_A 462 -ENPVWIIMELCTLGELRSFLQVRK---FSLDLASLILYAYQLSTALAYLE 508 (656)
T ss_dssp -SSSCEEEEECCTTCBHHHHHHHTT---TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cCceEEEEEcCCCCcHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999997542 45899999999999999999998
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=129.26 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=82.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCC-CCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSI-RHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l-~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|+..+.||+|+||+||+|+....+ +.|||| +.+ +|+|++++++++.. +...
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-----~~~~ 81 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNN--QQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-----GLHN 81 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTT--EEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-----TTEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCC--cEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCC-----Ccee
Confidence 356999999999999999999965543 489999 234 89999999999765 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+ +|+|.++++..+ ..+++.++..++.|+++||+|||
T Consensus 82 ~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~~l~~lH 123 (298)
T 1csn_A 82 VLVIDLL-GPSLEDLLDLCG---RKFSVKTVAMAAKQMLARVQSIH 123 (298)
T ss_dssp EEEEECC-CCBHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEec-CCCHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999998542 45899999999999999999998
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=131.61 Aligned_cols=104 Identities=23% Similarity=0.392 Sum_probs=84.2
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
..++|+..+.||+|+||+||+|+.... .++.|||| +.++||||+++++++....
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKN-GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTT-TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred chhceeeeeeecccccEEEEEEEecCC-CCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 456799999999999999999997422 23489999 1348999999999986322
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.......++||||++ |+|.+++.... ...+++.++..++.|+++||+|||
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~lH 137 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVP--EPGVPTETIKDMMFQLLRGLDFLH 137 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSC--TTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 233567899999998 69999997543 234899999999999999999998
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-12 Score=138.21 Aligned_cols=103 Identities=23% Similarity=0.355 Sum_probs=80.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeecccc-CCCceEEEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDF-QGNDFKALV 766 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~-~~~~~~~lv 766 (809)
..|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++..... .+..+.++|
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~--~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv 131 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGE--LVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV 131 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCc--EEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEee
Confidence 358889999999999999999765444 89999 57899999999998764221 223457899
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||++ ++.+.++........+++..+..|+.||++||+|||
T Consensus 132 ~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH 173 (420)
T 1j1b_A 132 LDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 173 (420)
T ss_dssp EECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999986 666665432112356899999999999999999998
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-12 Score=132.27 Aligned_cols=97 Identities=31% Similarity=0.444 Sum_probs=81.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.++|+..+.||+|+||+||+|+.. +. .|||| +.++||||+++++++.. .++..+
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~--~~--~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~~~ 91 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR--GN--KVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLY 91 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET--TE--EEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECC----C--CCE
T ss_pred hhhceEEeEEecCCCceEEEEEEc--CC--EEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEc----CCCceE
Confidence 467999999999999999999864 23 89999 57899999999998754 245689
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+++|+|.+++.... ...+++.++..++.|+++||+|||
T Consensus 92 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH 134 (278)
T 1byg_A 92 IVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLE 134 (278)
T ss_dssp EEECCCTTEEHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997432 123789999999999999999998
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=130.03 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=77.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccc-------
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVD------- 756 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~------- 756 (809)
+.|...+.||+|+||.||+|+....+ +.|||| +.++||||+++++++....
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 88 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCD--KRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDV 88 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTT--EEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC--
T ss_pred CceeEEEEeccCCCeEEEEEEECCCC--eEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccc
Confidence 56889999999999999999976543 489999 5789999999999874311
Q ss_pred --cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 --FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 --~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+....++||||++ |+|.++++. ..+++.++..++.|+++||+|||
T Consensus 89 ~~~~~~~~~~lv~e~~~-~~L~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 137 (320)
T 2i6l_A 89 GSLTELNSVYIVQEYME-TDLANVLEQ-----GPLLEEHARLFMYQLLRGLKYIH 137 (320)
T ss_dssp --CCSCSEEEEEEECCS-EEHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCceeEEeeccC-CCHHHHhhc-----CCccHHHHHHHHHHHHHHHHHHH
Confidence 123567899999998 699999964 34889999999999999999998
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=133.55 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=84.4
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
..+.|+..+.||+|+||+||+|.....+ +.|||| +.++||||+++++++.....++.
T Consensus 25 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 102 (364)
T 3qyz_A 25 VGPRYTNLSYIGEGAYGMVCSAYDNLNK--VRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQM 102 (364)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTC
T ss_pred ccccEEEEEEeecCCCeEEEEEEECCCC--eEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCcccc
Confidence 3457999999999999999999966543 489999 46899999999999876444444
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...|+||||++ |+|.++++.. .+++.++..|+.|+++||+|||
T Consensus 103 ~~~~iv~e~~~-~~L~~~l~~~-----~~~~~~~~~i~~qi~~aL~~LH 145 (364)
T 3qyz_A 103 KDVYIVQDLME-TDLYKLLKTQ-----HLSNDHICYFLYQILRGLKYIH 145 (364)
T ss_dssp CCEEEEEECCS-EEHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcccC-cCHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999997 5999998743 4899999999999999999998
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=144.95 Aligned_cols=99 Identities=20% Similarity=0.359 Sum_probs=79.7
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|...+.||+|+||+||+|+.... .++.|||| +.++|||||++++++......+...
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNV-NGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGG-TTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCC-CCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 5799999999999999999997541 23489999 5689999999999987632222233
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|||||||++|+|.+++.. .++|.++..|+.||++||+|||
T Consensus 159 ~~lv~E~~~g~~L~~~~~~------~l~~~~~~~~~~qi~~aL~~lH 199 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ------KLPVAEAIAYLLEILPALSYLH 199 (681)
T ss_dssp EEEEEECCCCEECC----C------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHhC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999987753 4899999999999999999998
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=134.77 Aligned_cols=97 Identities=22% Similarity=0.429 Sum_probs=74.7
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCC-CcceeeEeeeeeccccC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIR-HRNLVKIITSCASVDFQ 758 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~-H~niv~l~~~~~~~~~~ 758 (809)
..++|+..+.||+|+||+||+|.....+. .|||| +.+. |||||++++++.. +
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~---~ 81 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGE--VVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRA---D 81 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCC--EEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC---T
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCC--EEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEec---C
Confidence 34679999999999999999999665444 89999 3454 9999999999764 2
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+....|+|||||+ |+|.++++. ..+++..+..++.|+++||+|||
T Consensus 82 ~~~~~~lv~e~~~-~~L~~~~~~-----~~~~~~~~~~i~~qi~~~L~~LH 126 (388)
T 3oz6_A 82 NDRDVYLVFDYME-TDLHAVIRA-----NILEPVHKQYVVYQLIKVIKYLH 126 (388)
T ss_dssp TSSCEEEEEECCS-EEHHHHHHH-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecccC-cCHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 2457899999998 699999974 24899999999999999999998
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=136.67 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=80.7
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc-cCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD-FQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~-~~~ 759 (809)
.++|+..+.||+|+||+||+|..... ++.|||| +.++|||||++++++.... .++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~ 138 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVL--DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEE 138 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTT--TEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTT
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCC--CCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcccc
Confidence 46799999999999999999996554 4489999 4679999999999986522 123
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....|+|||||+++ +.+.++. .+++.++..++.|+++||+|||
T Consensus 139 ~~~~~lv~E~~~~~-l~~~~~~------~l~~~~~~~~~~qil~aL~~lH 181 (464)
T 3ttj_A 139 FQDVYLVMELMDAN-LCQVIQM------ELDHERMSYLLYQMLCGIKHLH 181 (464)
T ss_dssp CCEEEEEEECCSEE-HHHHHTS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCC-HHHHHhh------cCCHHHHHHHHHHHHHHHHHHH
Confidence 45689999999864 7677652 3889999999999999999998
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=133.87 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=76.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc-cCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD-FQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~-~~~ 759 (809)
.+.|...+.||+|+||+||+|.....+ +.|||| +.++|||||++++++.... ..+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~ 101 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTG--AKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD 101 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTC--CEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTT
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCC--CEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCcccc
Confidence 467999999999999999999965544 489999 4678999999999986521 112
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....|+||||| +++|.++++. ..+++.++..++.|+++||+|||
T Consensus 102 ~~~~~lv~e~~-~~~L~~~~~~-----~~l~~~~~~~~~~qi~~~L~~LH 145 (367)
T 1cm8_A 102 FTDFYLVMPFM-GTDLGKLMKH-----EKLGEDRIQFLVYQMLKGLRYIH 145 (367)
T ss_dssp CCCCEEEEECC-SEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 24579999999 8899999974 24899999999999999999998
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=129.57 Aligned_cols=94 Identities=22% Similarity=0.364 Sum_probs=80.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------cCCC-CcceeeEeeeeeccccCCCceEEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSIR-HRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l~-H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
++|+..+.||+|+||+||+|+....+. .|||| +.++ ||||+++++++... .....++
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~---~~~~~~l 110 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNE--KVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDP---VSRTPAL 110 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECT---TTCCEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCc--EEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccC---CCCceEE
Confidence 579999999999999999999765544 89999 3454 99999999997642 2566899
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++|+|.++++ .+++.++..++.|+++||+|||
T Consensus 111 v~e~~~~~~l~~~~~-------~~~~~~~~~~~~qi~~~l~~lH 147 (330)
T 3nsz_A 111 VFEHVNNTDFKQLYQ-------TLTDYDIRFYMYEILKALDYCH 147 (330)
T ss_dssp EEECCCCCCHHHHGG-------GCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCchhHHHHHH-------hCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999985 2789999999999999999998
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=129.10 Aligned_cols=98 Identities=31% Similarity=0.388 Sum_probs=78.6
Q ss_pred cccccccceeccCCceeEEEEEECC-CCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~-~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
.++|+..+.||+|+||+||+|++.. .+....|||| +.++||||+++++++..
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 92 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT---- 92 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc----
Confidence 3578999999999999999998643 3344578999 46789999999999764
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++|+|.+++.... ..+++.++..++.|+++||+|||
T Consensus 93 --~~~~~v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~i~~~l~~lH 138 (291)
T 1u46_A 93 --PPMKMVTELAPLGSLLDRLRKHQ---GHFLLGTLSRYAVQVAEGMGYLE 138 (291)
T ss_dssp --SSCEEEEECCTTCBHHHHHHHHG---GGSCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCceeeEecccCCCHHHHHHhcc---CCcCHHHHHHHHHHHHHHHHHHH
Confidence 33899999999999999997532 35899999999999999999998
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=130.11 Aligned_cols=101 Identities=24% Similarity=0.368 Sum_probs=81.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc---
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF--- 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~--- 757 (809)
.++|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.....
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 93 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQ--KVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYN 93 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCC--EEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-----
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCC--EEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccc
Confidence 3579999999999999999999765444 89999 45789999999999875211
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...+..++|||||++ +|.+.+.... ..+++.++..|+.|+++||+|||
T Consensus 94 ~~~~~~~lv~e~~~~-~l~~~l~~~~---~~~~~~~~~~i~~qi~~~l~~LH 141 (351)
T 3mi9_A 94 RCKGSIYLVFDFCEH-DLAGLLSNVL---VKFTLSEIKRVMQMLLNGLYYIH 141 (351)
T ss_dssp ---CEEEEEEECCSE-EHHHHHHCTT---SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEeccCC-CHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 113468999999985 7877776542 45899999999999999999998
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.9e-12 Score=131.05 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=77.3
Q ss_pred HHhcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCC----CCcceeeEe
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSI----RHRNLVKII 749 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l----~H~niv~l~ 749 (809)
....++|+..+.||+|+||.||+|+....+ +.|||| +++ +||||++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDR--LQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTC--CEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCC--eEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 334567999999999999999999965443 489999 112 799999999
Q ss_pred eeeeccccCCCceEEEEEec-cCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 750 TSCASVDFQGNDFKALVYEF-MVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 750 ~~~~~~~~~~~~~~~lv~Ey-~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++.. .+..++|||| +++|+|.+++..+ ..+++.++..++.|+++||+|||
T Consensus 105 ~~~~~-----~~~~~~v~e~~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH 156 (312)
T 2iwi_A 105 DWFET-----QEGFMLVLERPLPAQDLFDYITEK----GPLGEGPSRCFFGQVVAAIQHCH 156 (312)
T ss_dssp EEC----------CEEEEECCSSEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEec-----CCeEEEEEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99754 6778999999 8999999999753 35899999999999999999998
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-11 Score=127.06 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=81.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|...+.||+|+||.||+|.....+ +.|||| +.++||||+++++++.. +
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~-----~ 93 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSG--QIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFR-----E 93 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTT--EEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEEC-----S
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCC--CEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEe-----C
Confidence 467889999999999999999976544 489999 46799999999999775 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCC-CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKP-EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~-~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+++ +|.+++.... .....+++..+..++.|+++||+|||
T Consensus 94 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH 142 (327)
T 3aln_A 94 GDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK 142 (327)
T ss_dssp SEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh
Confidence 789999999985 7877775210 11345899999999999999999998
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-11 Score=131.20 Aligned_cols=103 Identities=19% Similarity=0.232 Sum_probs=82.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCC-CCcceeeEeeeeeccc---cC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSI-RHRNLVKIITSCASVD---FQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l-~H~niv~l~~~~~~~~---~~ 758 (809)
..+|+..+.||+|+||+||+|+....+. .|||| +++ +|||||++++++.... ..
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~ 104 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGR--EYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDT 104 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCC--EEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTT
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCc--EEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhcccccccccccccc
Confidence 3578999999999999999999765444 89999 244 4999999999984321 13
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+....++||||++ |+|.++++... ....+++.++..|+.|+++||+|||
T Consensus 105 ~~~~~~lv~e~~~-g~L~~~l~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH 153 (337)
T 3ll6_A 105 GQAEFLLLTELCK-GQLVEFLKKME-SRGPLSCDTVLKIFYQTCRAVQHMH 153 (337)
T ss_dssp SSEEEEEEEECCS-EEHHHHHHHHH-TTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEecC-CCHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566899999996 79999886422 2345999999999999999999998
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-11 Score=131.51 Aligned_cols=109 Identities=19% Similarity=0.285 Sum_probs=73.3
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeecccc-
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDF- 757 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~- 757 (809)
+.....++|...+.||+|+||+||+|+....+. .|||| +.++|||||++++++.....
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGM--SVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHTTEEEC----------CEEEEETTTCC--EEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hchhhccceEEEEEEecCCCeEEEEEEECCCCC--EEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 445667889999999999999999999765444 89999 34689999999999865321
Q ss_pred -CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 -QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 -~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
......++|||||++ +|.+.+.........+++..+..++.|++.||+|||
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH 146 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLH 146 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh
Confidence 123347899999986 454444321112356889999999999999999999
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-11 Score=129.92 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=81.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc-cCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD-FQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~-~~~ 759 (809)
.++|...+.||+|+||+||+|..... ++.|||| +.++|||||++++++.... ..+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~ 101 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAIL--ERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE 101 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTT
T ss_pred hhheeEeeeeEecCCEEEEEEEECCC--CceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccc
Confidence 46799999999999999999996554 3489999 4679999999999976521 122
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....|+|||||+ |+|.+++.. .+++.++..++.|+++||+|||
T Consensus 102 ~~~~~lv~e~~~-~~l~~~~~~------~~~~~~~~~i~~qi~~al~~lH 144 (371)
T 2xrw_A 102 FQDVYIVMELMD-ANLCQVIQM------ELDHERMSYLLYQMLCGIKHLH 144 (371)
T ss_dssp CCEEEEEEECCS-EEHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEcCC-CCHHHHHhh------ccCHHHHHHHHHHHHHHHHHHH
Confidence 347899999997 478888862 3889999999999999999998
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-11 Score=131.30 Aligned_cols=97 Identities=22% Similarity=0.299 Sum_probs=82.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeecccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
...|+..+.||+|+||+||+|.....+ +.|||| ....|+||+++++++..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~--~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~--- 170 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVH--QHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF--- 170 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTT--EEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE---
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCC--cEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc---
Confidence 356899999999999999999966543 489999 23478999999999876
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++|||||+ |+|.+++.... ...+++..+..|+.||++||+|||
T Consensus 171 --~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~aL~~LH 217 (429)
T 3kvw_A 171 --RNHICMTFELLS-MNLYELIKKNK--FQGFSLPLVRKFAHSILQCLDALH 217 (429)
T ss_dssp --TTEEEEEECCCC-CBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEEeccC-CCHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999996 69999987543 234899999999999999999998
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-12 Score=136.05 Aligned_cols=98 Identities=27% Similarity=0.359 Sum_probs=74.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----c------------------------CC---------CCcce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----R------------------------SI---------RHRNL 745 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----~------------------------~l---------~H~ni 745 (809)
.++|+..+.||+|+||+||+|+.. ++.|||| . .+ +||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~----~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~ni 94 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIAD----HTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGF 94 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEET----TEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCB
T ss_pred cccchheeeecccCceEEEEEEeC----CceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCch
Confidence 356888999999999999999962 2489999 1 12 37777
Q ss_pred eeEeeeeecc-------------------------ccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHH
Q 040849 746 VKIITSCASV-------------------------DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVD 800 (809)
Q Consensus 746 v~l~~~~~~~-------------------------~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ 800 (809)
|++.+++... ++.+++..|+|||||++|++.+.+.+ ..+++.++..|+.|
T Consensus 95 v~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-----~~~~~~~~~~i~~q 169 (336)
T 2vuw_A 95 IGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-----KLSSLATAKSILHQ 169 (336)
T ss_dssp CCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-----TCCCHHHHHHHHHH
T ss_pred hhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-----cCCCHHHHHHHHHH
Confidence 7766653210 01125789999999999987777743 34899999999999
Q ss_pred HHHHhhhcC
Q 040849 801 VASALDYLH 809 (809)
Q Consensus 801 ia~gl~yLH 809 (809)
|++||+|||
T Consensus 170 i~~aL~~lH 178 (336)
T 2vuw_A 170 LTASLAVAE 178 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-12 Score=142.61 Aligned_cols=103 Identities=25% Similarity=0.392 Sum_probs=83.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccc-cCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVD-FQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~-~~~~~ 761 (809)
++|...+.||+|+||.||+|.....+ +.|||| +.++|||||++++++.... +.+++
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg--~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTG--EQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTT--CCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCC--cEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 67999999999999999999965443 489999 4679999999999865411 22356
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++|||||++|+|.+++.... ....+++..+..|+.|++.||+|||
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~-~~~~lse~~i~~I~~QLl~aL~yLH 138 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFE-NCCGLKEGPIRTLLSDISSALRYLH 138 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSS-CTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHhcc-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998653 2345889999999999999999998
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-11 Score=132.57 Aligned_cols=100 Identities=20% Similarity=0.339 Sum_probs=73.7
Q ss_pred ccc-cceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 706 FSL-ENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 706 ~~~-~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
|+. .++||+|+||+||+|+..+...++.|||| +.++|||||++++++.. .++...|+|
T Consensus 22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~~~~~lv 98 (405)
T 3rgf_A 22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLS---HADRKVWLL 98 (405)
T ss_dssp EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEE---TTTTEEEEE
T ss_pred hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEec---CCCCeEEEE
Confidence 554 46899999999999998754455589999 46899999999999854 236789999
Q ss_pred EeccCCCChhhhhcCCC-----CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKP-----EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~-----~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||++ |+|.+++...+ .....+++.++..|+.||+.||+|||
T Consensus 99 ~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH 145 (405)
T 3rgf_A 99 FDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH 145 (405)
T ss_dssp EECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99997 58888775321 12235899999999999999999998
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-11 Score=131.43 Aligned_cols=99 Identities=18% Similarity=0.311 Sum_probs=74.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc-cCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD-FQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~-~~~ 759 (809)
.++|...+.||+|+||.||+|.....+ +.|||| +.++|||||++++++.... .++
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~ 105 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTG--LRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE 105 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTT--EEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGG
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCC--CEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCcccc
Confidence 467999999999999999999965543 489999 4679999999999976421 122
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....|+||||+ +++|.++++. ..+++.++..++.||++||+|||
T Consensus 106 ~~~~~lv~e~~-~~~L~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH 149 (367)
T 2fst_X 106 FNDVYLVTHLM-GADLNNIVKC-----QKLTDDHVQFLIYQILRGLKYIH 149 (367)
T ss_dssp CCCCEEEEECC-CEECC----------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccc-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 35689999999 6899998864 34899999999999999999998
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-11 Score=132.42 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=78.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeecccc-CCCceEEEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDF-QGNDFKALV 766 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~-~~~~~~~lv 766 (809)
..|+..+.||+|+||+||+|+...+ . .||+| +.++|||||++++++..... .+....++|
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~-~--~~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv 116 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVES-D--EVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLV 116 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTT-E--EEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCC-C--eEEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEE
Confidence 4689999999999999999997654 2 48888 57899999999999865321 234458899
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||+++.+....+.. .....+++..+..|+.|+++||+|||
T Consensus 117 ~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~qi~~aL~~LH 158 (394)
T 4e7w_A 117 LEYVPETVYRASRHYA-KLKQTMPMLLIKLYMYQLLRSLAYIH 158 (394)
T ss_dssp EECCSEEHHHHHHHHH-HTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCccHHHHHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999875444332211 12345899999999999999999998
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-12 Score=136.79 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=76.6
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeee---
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSC--- 752 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~--- 752 (809)
..++|...+.||+|+||+||+|+....+. .|||| +.++|||||++++.+
T Consensus 71 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~ 148 (377)
T 3byv_A 71 RPRTLVRGTVLGQEDPYAYLEATDQETGE--SFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFP 148 (377)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEC-CCCC--EEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCC
T ss_pred CCceEEEcceeecCCCEEEEEEEECCCCc--EEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhh
Confidence 34678889999999999999999654434 89999 345899999999443
Q ss_pred ----eccc-------cCCCc-----eEEEEEeccCCCChhhhhcCCCC---CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 753 ----ASVD-------FQGND-----FKALVYEFMVNGSLEEWLHPKPE---APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 753 ----~~~~-------~~~~~-----~~~lv~Ey~~~GsL~~~l~~~~~---~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.... +.+++ ..|+||||| +|+|.++++..+. ....++|..+..|+.||++||+|||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 223 (377)
T 3byv_A 149 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH 223 (377)
T ss_dssp SEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 2210 00111 378999999 6899999975321 1123456888999999999999998
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=127.27 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=73.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||.||+|+....+. .|||| +.++||||+++++++.. +
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-----~ 96 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGH--VIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFIT-----N 96 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCC--EEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----S
T ss_pred hccccccceeeecCCeeEEEEEEecCCe--EEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEec-----C
Confidence 4678899999999999999999765444 89999 45799999999999765 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++||||+ ++.+..+.... ...+++.++..++.|+++||+|||
T Consensus 97 ~~~~lv~e~~-~~~~~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH 141 (318)
T 2dyl_A 97 TDVFIAMELM-GTCAEKLKKRM---QGPIPERILGKMTVAIVKALYYLK 141 (318)
T ss_dssp SEEEEEECCC-SEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecc-CCcHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999 45555555422 245899999999999999999998
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-11 Score=129.04 Aligned_cols=94 Identities=19% Similarity=0.359 Sum_probs=80.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCC--cceeeEeeeeeccccC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRH--RNLVKIITSCASVDFQ 758 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H--~niv~l~~~~~~~~~~ 758 (809)
.+.|+..+.||+|+||+||+|.... ++.|||| +.++| |||+++++++..
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~---- 80 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEK---KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT---- 80 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTT---SCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC----
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCC---CCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEee----
Confidence 3568999999999999999998643 3489999 24555 999999999775
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||| +.+|+|.+++..+ ..+++.++..|+.|+++||+|||
T Consensus 81 -~~~~~lv~e-~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~al~~lH 125 (343)
T 3dbq_A 81 -DQYIYMVME-CGNIDLNSWLKKK----KSIDPWERKSYWKNMLEAVHTIH 125 (343)
T ss_dssp -SSEEEEEEC-CCSEEHHHHHHHS----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEe-CCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 778999999 5688999999854 45899999999999999999998
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4e-11 Score=125.24 Aligned_cols=98 Identities=28% Similarity=0.458 Sum_probs=79.3
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
..++|+..+.||+|+||+||+|+....+ +.|||| +.++|++++..++++.. +++..
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~----~~~~~ 80 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAG--EEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGA----EGDYN 80 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTT--EEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEE----ETTEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCC--ceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecC----CCCce
Confidence 3467999999999999999999965544 489999 35678887777776643 26778
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++||||+ +|+|.+++.... ..+++.++..++.|+++||+|||
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~---~~~~~~~~~~i~~qi~~~l~~LH 122 (296)
T 4hgt_A 81 VMVMELL-GPSLEDLFNFCS---RKFSLKTVLLLADQMISRIEYIH 122 (296)
T ss_dssp EEEEECC-CCBHHHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcc-CCCHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999997432 45899999999999999999998
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=132.90 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=79.7
Q ss_pred ccccccceeccCCceeEEEEEECCCC------ceeEEEEe---------------cCCCCcceee---------------
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDD------HETLVAVK---------------RSIRHRNLVK--------------- 747 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~------~~~~vavK---------------~~l~H~niv~--------------- 747 (809)
++|...+.||+|+||+||+|+..... .++.|||| ++++|||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~ 121 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPT 121 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCC
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccCccc
Confidence 57999999999999999999976521 13489999 4678999998
Q ss_pred EeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 748 l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++++.. +++..++||||| +|+|.+++.... ...+++.++..|+.||++||+|||
T Consensus 122 ~~~~~~~----~~~~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~~L~~LH 176 (352)
T 2jii_A 122 CMGFGVH----QDKYRFLVLPSL-GRSLQSALDVSP--KHVLSERSVLQVACRLLDALEFLH 176 (352)
T ss_dssp CCEEEEE----TTTEEEEEEECC-CEEHHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccc----CCcEEEEEecCC-CcCHHHHHHhCC--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555432 257799999999 999999998542 245999999999999999999998
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.3e-11 Score=129.42 Aligned_cols=98 Identities=19% Similarity=0.311 Sum_probs=79.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc-CC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF-QG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~~ 759 (809)
.+.|...+.||+|+||+||+|.....+ +.|||| +.++|||||++++++..... ..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 118 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSG--EKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRN 118 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTT
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCC--CEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccc
Confidence 357889999999999999999966544 489999 46899999999999865211 01
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++||||++ |+|.+++. ..+++.++..++.|+++||+|||
T Consensus 119 ~~~~~lv~e~~~-~~l~~~~~------~~~~~~~~~~i~~qi~~aL~~LH 161 (371)
T 4exu_A 119 FYDFYLVMPFMQ-TDLQKIMG------MEFSEEKIQYLVYQMLKGLKYIH 161 (371)
T ss_dssp CCCCEEEEECCC-EEHHHHTT------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEcccc-ccHHHHhh------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 112499999998 68988874 23899999999999999999998
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-11 Score=128.42 Aligned_cols=98 Identities=19% Similarity=0.309 Sum_probs=79.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc-CC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF-QG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~~ 759 (809)
.++|...+.||+|+||.||+|+....+ +.|||| +.++||||+++++++..... ..
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 100 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSG--EKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRN 100 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGG
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCC--CEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccc
Confidence 357889999999999999999976544 489999 46789999999999765210 01
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++||||++ |+|.+++.. .+++.++..++.||++||+|||
T Consensus 101 ~~~~~lv~e~~~-~~l~~~~~~------~~~~~~~~~i~~qi~~al~~LH 143 (353)
T 3coi_A 101 FYDFYLVMPFMQ-TDLQKIMGL------KFSEEKIQYLVYQMLKGLKYIH 143 (353)
T ss_dssp CCCCEEEEECCS-EEGGGTTTS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEecccc-CCHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 123599999997 689888752 3899999999999999999998
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-11 Score=130.49 Aligned_cols=93 Identities=19% Similarity=0.362 Sum_probs=79.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCC--CcceeeEeeeeeccccCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIR--HRNLVKIITSCASVDFQG 759 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~--H~niv~l~~~~~~~~~~~ 759 (809)
..|+..+.||+|+||+||+|.... ++.|||| +.++ |||||++++++..
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~----- 127 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEK---KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT----- 127 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTT---CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----
T ss_pred CceEEEEEEccCCCeEEEEEEcCC---CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEec-----
Confidence 459999999999999999998644 3489999 2343 6999999999775
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+||| +.+|+|.+++... ..+++.++..|+.||++||+|||
T Consensus 128 ~~~~~lv~E-~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~lH 172 (390)
T 2zmd_A 128 DQYIYMVME-CGNIDLNSWLKKK----KSIDPWERKSYWKNMLEAVHTIH 172 (390)
T ss_dssp SSEEEEEEE-CCSEEHHHHHHHC----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEe-cCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999 5688999999854 35889999999999999999998
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5e-11 Score=124.53 Aligned_cols=97 Identities=28% Similarity=0.463 Sum_probs=80.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.++|+..+.||+|+||+||+|+....+ +.|||| +.++|+++++.++++.. .++..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~----~~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAG--EEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGA----EGDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTT--EEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEE----ETTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCC--cEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccC----CCCceE
Confidence 467999999999999999999965543 489999 45678887777776643 267789
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||+ +|+|.+++...+ ..+++.++..++.|+++||+|||
T Consensus 82 lv~e~~-~~~L~~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH 122 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFCS---RKFSLKTVLLLADQMISRIEYIH 122 (296)
T ss_dssp EEEECC-CCBHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEec-CCCHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999997432 45899999999999999999998
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.4e-11 Score=129.40 Aligned_cols=100 Identities=21% Similarity=0.345 Sum_probs=78.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCC--------CCcceeeEeeeeeccc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSI--------RHRNLVKIITSCASVD 756 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l--------~H~niv~l~~~~~~~~ 756 (809)
++|+..+.||+|+||+||+|+....+ +.|||| +.+ .|+||+++++++....
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGK--KFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCC--eEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 57999999999999999999966544 489999 122 2899999999876311
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.++...++||||| +|++.+++.... ...+++.++..|+.||++||+|||
T Consensus 115 -~~~~~~~lv~e~~-~~~l~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~lH 163 (397)
T 1wak_A 115 -VNGTHICMVFEVL-GHHLLKWIIKSN--YQGLPLPCVKKIIQQVLQGLDYLH 163 (397)
T ss_dssp -TTEEEEEEEECCC-CCBHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEEEEecc-CccHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1256799999999 566666665332 245899999999999999999998
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=123.11 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=80.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------c------CCCCcceeeEeeeeeccccC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------R------SIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~------~l~H~niv~l~~~~~~~~~~ 758 (809)
++|+..+.||+|+||+||+|..... .++.|||| + ...|++|+++++++..
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~-~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~---- 88 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKA-GGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH---- 88 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTT-TTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE----
T ss_pred CceEEEEEEecCCCeEEEEEEecCC-CCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc----
Confidence 5799999999999999999986322 33589999 1 2345569999999765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||| +|+|.+++...+ ...+++.++..++.|+++||+|||
T Consensus 89 -~~~~~lv~e~~-~~~l~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~lH 135 (339)
T 1z57_A 89 -HGHICIVFELL-GLSTYDFIKENG--FLPFRLDHIRKMAYQICKSVNFLH 135 (339)
T ss_dssp -TTEEEEEEECC-CCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcEEEEEcCC-CCCHHHHHHhcC--CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 67899999999 899999997543 245899999999999999999998
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=8.3e-11 Score=124.39 Aligned_cols=97 Identities=23% Similarity=0.322 Sum_probs=82.6
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCC--CCcceeeEeeeee
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSI--RHRNLVKIITSCA 753 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l--~H~niv~l~~~~~ 753 (809)
..++|+..+.||+|+||+||+|+....+ +.|||| +++ .||||+++++++.
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~--~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~ 118 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDN--LPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE 118 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTT--EEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCC--cEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence 3567999999999999999999976554 489999 122 4799999999976
Q ss_pred ccccCCCceEEEEEeccCC-CChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVN-GSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~-GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. ++..++||||+++ |+|.+++..+ ..+++..+..++.|+++||+|||
T Consensus 119 ~-----~~~~~lv~e~~~~~~~L~~~l~~~----~~l~~~~~~~i~~qi~~~L~~LH 166 (320)
T 3a99_A 119 R-----PDSFVLILERPEPVQDLFDFITER----GALQEELARSFFWQVLEAVRHCH 166 (320)
T ss_dssp C-----SSEEEEEEECCSSEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-----CCcEEEEEEcCCCCccHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 6789999999986 8999999743 35899999999999999999998
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=129.06 Aligned_cols=96 Identities=26% Similarity=0.442 Sum_probs=77.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCC-cceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRH-RNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H-~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|...+.||+|+||.||+|+....+. .|||| +.++| ++|..+..++.. .+..
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~--~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~-----~~~~ 78 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNE--EVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVE-----GDYN 78 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCC--EEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEE-----TTEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCc--EEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEee-----CCEE
Confidence 3679999999999999999999765444 89999 34566 445555444443 6788
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||||+ +|+|.+++.... ..+++.+++.|+.||+.||+|||
T Consensus 79 ~lvme~~-g~sL~~ll~~~~---~~l~~~~~~~i~~qi~~aL~yLH 120 (483)
T 3sv0_A 79 VLVMDLL-GPSLEDLFNFCS---RKLSLKTVLMLADQMINRVEFVH 120 (483)
T ss_dssp EEEEECC-CCBHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCHHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999997432 45999999999999999999998
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=124.72 Aligned_cols=98 Identities=26% Similarity=0.338 Sum_probs=80.7
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------c------CCCCcceeeEeeeeeccc
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------R------SIRHRNLVKIITSCASVD 756 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~------~l~H~niv~l~~~~~~~~ 756 (809)
..++|...+.||+|+||+||+|+....+ +.|||| + ...|++|+++++++..
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~-- 127 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQ--EWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF-- 127 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTT--EEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE--
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCC--cEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc--
Confidence 3568999999999999999999976544 489999 1 1223459999999775
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||++ |+|.+++.... ...+++..+..++.|++.||+|||
T Consensus 128 ---~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~al~~lH 174 (382)
T 2vx3_A 128 ---RNHLCLVFEMLS-YNLYDLLRNTN--FRGVSLNLTRKFAQQMCTALLFLA 174 (382)
T ss_dssp ---TTEEEEEEECCC-CBHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCceEEEEecCC-CCHHHHHhhcC--cCCCCHHHHHHHHHHHHHHHHHhc
Confidence 678999999996 59999998543 245899999999999999999998
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-11 Score=125.93 Aligned_cols=103 Identities=18% Similarity=0.344 Sum_probs=83.7
Q ss_pred ccHHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCC--CcceeeEe
Q 040849 694 VSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIR--HRNLVKII 749 (809)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~--H~niv~l~ 749 (809)
+.++.+....++|+..+.||+|+||.||+|...+ ++.|||| ++++ ||||++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~ 94 (313)
T 3cek_A 18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEK---KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLY 94 (313)
T ss_dssp --CCEEEETTEEEEEEEEEECCSSEEEEEEECTT---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEE
T ss_pred CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCC---CcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEE
Confidence 3444444556779999999999999999998644 3479999 2344 59999999
Q ss_pred eeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 750 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++.. ++..++||| +.+|+|.+++... ..+++.++..++.|+++||+|||
T Consensus 95 ~~~~~-----~~~~~lv~e-~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH 144 (313)
T 3cek_A 95 DYEIT-----DQYIYMVME-CGNIDLNSWLKKK----KSIDPWERKSYWKNMLEAVHTIH 144 (313)
T ss_dssp EEEEC-----SSEEEEEEC-CCSEEHHHHHHHC----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeec-----CCEEEEEEe-cCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99765 678999999 6688999999754 35899999999999999999998
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=126.48 Aligned_cols=100 Identities=20% Similarity=0.318 Sum_probs=81.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCC-----------CCcceeeEeeeee
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSI-----------RHRNLVKIITSCA 753 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l-----------~H~niv~l~~~~~ 753 (809)
++|...+.||+|+||+||+|+....+ +.|||| +++ .||||+++++++.
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~--~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNN--THVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCC--cEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 57999999999999999999965544 489999 112 3899999999976
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
... .+....++||||+ +|+|.+++.... ...+++.++..++.||+.||+|||
T Consensus 97 ~~~-~~~~~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~lH 148 (373)
T 1q8y_A 97 HKG-PNGVHVVMVFEVL-GENLLALIKKYE--HRGIPLIYVKQISKQLLLGLDYMH 148 (373)
T ss_dssp EEE-TTEEEEEEEECCC-CEEHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-CCCceEEEEEecC-CCCHHHHHHHhh--ccCCcHHHHHHHHHHHHHHHHHHH
Confidence 521 1233789999999 899999997543 245899999999999999999998
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=128.45 Aligned_cols=95 Identities=22% Similarity=0.350 Sum_probs=75.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------cCC-CCcceeeEeeeeeccccCCCceEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSI-RHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l-~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
..+|...++||+|+||+||.....++ . .|||| +.+ +|||||++++++.. +...|
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~-~--~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~-----~~~~~ 94 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDN-R--DVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKD-----RQFQY 94 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSS-S--EEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEE-----TTEEE
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCC-e--EEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEec-----CCEEE
Confidence 34688899999999999553332222 3 89999 345 89999999998765 77899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||||+ |+|.+++.... ....+.++..++.||++||+|||
T Consensus 95 lv~E~~~-g~L~~~l~~~~---~~~~~~~~~~i~~qi~~aL~~LH 135 (432)
T 3p23_A 95 IAIELCA-ATLQEYVEQKD---FAHLGLEPITLLQQTTSGLAHLH 135 (432)
T ss_dssp EEEECCS-EEHHHHHHSSS---CCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCC-CCHHHHHHhcC---CCccchhHHHHHHHHHHHHHHHH
Confidence 9999996 69999998653 23445567889999999999998
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-10 Score=127.88 Aligned_cols=95 Identities=25% Similarity=0.285 Sum_probs=70.4
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe-----------------c-CCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------R-SIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~-~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
|...++||+|+||+||.+.... ++.|||| + ..+|||||++++++.. ++..|+||
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~---g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-----~~~~~lv~ 88 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQ---GRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETT-----DRFLYIAL 88 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESS---SSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-----SSEEEEEE
T ss_pred eeccCeEeeCCCeEEEEEEEEC---CeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEec-----CCeEEEEE
Confidence 4456889999999997655333 3389999 2 2489999999998764 77899999
Q ss_pred eccCCCChhhhhcCCCCCCCC---CCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRN---SNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~---~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||+ |+|.+++......... .++.++..|+.||++||+|||
T Consensus 89 E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 132 (434)
T 2rio_A 89 ELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH 132 (434)
T ss_dssp CCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH
T ss_pred ecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH
Confidence 9996 6999999865322111 134456789999999999998
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.1e-11 Score=126.89 Aligned_cols=100 Identities=10% Similarity=-0.081 Sum_probs=66.2
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEee------
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIIT------ 750 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~------ 750 (809)
..+|...+.||+|+||+||+|+....+. .|||| +. +|||||+++.
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~--~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~ 137 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLE--DFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPS 137 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTE--EEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCC
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCc--eeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeee
Confidence 4458899999999999999999765544 89999 23 6999888653
Q ss_pred -eeecccc------CC------CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHH------HHHHHHHHHHhhhcC
Q 040849 751 -SCASVDF------QG------NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQR------LSIAVDVASALDYLH 809 (809)
Q Consensus 751 -~~~~~~~------~~------~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~------~~i~~~ia~gl~yLH 809 (809)
++..... .+ ....|+|||||+ |+|.++++..+ ..+.+..+ ..++.||++||+|||
T Consensus 138 d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~~vk~~i~~qi~~aL~~LH 211 (371)
T 3q60_A 138 DAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD---FVYVFRGDEGILALHILTAQLIRLAANLQ 211 (371)
T ss_dssp EEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH---HSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc---cccchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3221100 00 144899999999 89999998532 22455556 788899999999998
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.2e-08 Score=104.35 Aligned_cols=146 Identities=12% Similarity=0.121 Sum_probs=70.5
Q ss_pred CccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhccc
Q 040849 411 PGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLS 490 (809)
Q Consensus 411 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 490 (809)
...+..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~----------- 275 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK----------- 275 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-----------
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-----------
Confidence 344445555555555443 22233344555555555555443 33344445555555555544322 21
Q ss_pred CCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeC
Q 040849 491 SLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDL 570 (809)
Q Consensus 491 ~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL 570 (809)
......|..+++|+.+++.++.++.....+|.+|++|+.++|..+ ++..-..+|.++++|+.+.+
T Consensus 276 --------------~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 276 --------------TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp --------------EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred --------------eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 122234445555555555555555444455555555555555433 44344445555666665555
Q ss_pred CCCCcccccccccccC
Q 040849 571 SRNNLSGRIPKYFENF 586 (809)
Q Consensus 571 s~N~l~~~~p~~~~~l 586 (809)
..+ ++..-..+|.+.
T Consensus 341 p~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 341 PKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTT-CCEECTTTTTTS
T ss_pred CCc-cCEEchhHhhCC
Confidence 433 444444455444
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-10 Score=121.67 Aligned_cols=97 Identities=20% Similarity=0.346 Sum_probs=77.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcc------eeeEeeeeeccccC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN------LVKIITSCASVDFQ 758 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~n------iv~l~~~~~~~~~~ 758 (809)
++|+..+.||+|+||+||+|.....+ ++.|||| +.++|++ ++++++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~---- 93 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARG-KSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF---- 93 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTT-TEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE----
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCC-ceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee----
Confidence 57999999999999999999975442 2489999 2344444 8999988765
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..++||||+ +|++.+++.... ...+++.++..|+.||++||+|||
T Consensus 94 -~~~~~lv~e~~-~~~l~~~l~~~~--~~~~~~~~~~~i~~qi~~~L~~lH 140 (355)
T 2eu9_A 94 -HGHMCIAFELL-GKNTFEFLKENN--FQPYPLPHVRHMAYQLCHALRFLH 140 (355)
T ss_dssp -TTEEEEEEECC-CCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEEecc-CCChHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999 667777776432 245899999999999999999998
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.3e-12 Score=126.86 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=80.9
Q ss_pred CCCcccccccCCCCCcEEEEECCC---CCCccccCc-cccCCCCccEEeCCCCCCCccCCc-cccccccCCc--cccCCC
Q 040849 61 HFCQWKGVTCSPRHQRVTALLLPS---LLLQGSLSP-HIGNLSFLRVLDLKNNSFRNEIPQ-EIGYLFRLQF--LWLDNN 133 (809)
Q Consensus 61 ~~c~w~gv~c~~~~~~v~~l~l~~---~~l~g~~~~-~l~~l~~L~~LdLs~n~l~~~~p~-~~~~l~~L~~--L~Ls~N 133 (809)
..|.|.|+.|+....+|+.+..++ ..++|.+.+ .+..++. .|...+|.-++.++- .|...+.|+. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 368999999987656776555444 233444432 1112211 222333333322221 2455555655 666766
Q ss_pred cCc---ccCCccccCCCcCcEEEcccCCCCC--CCcccccCCCCCCEEEcccccCcccCCccCCCCC--CCCEEEcccCc
Q 040849 134 TFG---GQIPDNISHCVNLESLRLGFNELVG--KVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLS--SLEVLSASANQ 206 (809)
Q Consensus 134 ~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~ 206 (809)
... +.++....++++|++|+|++|++++ .+|..+..+++|++|+|++|+|++. ..+..+. +|++|+|++|.
T Consensus 154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST
T ss_pred HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc
Confidence 432 1122222456777777777777776 3345566777777777777777653 2233333 67777777777
Q ss_pred ccccCc
Q 040849 207 FVGQIP 212 (809)
Q Consensus 207 l~~~~p 212 (809)
+++.+|
T Consensus 232 l~~~~~ 237 (267)
T 3rw6_A 232 LCDTFR 237 (267)
T ss_dssp TGGGCS
T ss_pred CccccC
Confidence 665444
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.4e-10 Score=119.74 Aligned_cols=84 Identities=12% Similarity=0.225 Sum_probs=55.9
Q ss_pred CCCCCCEEEccccccccccCcccc---CCCCCCEEeCcCCccccc----cchhhcCCCCCCEEeCCCCCccccccccccc
Q 040849 513 ILKNLGVLDVSENKLSGEIPNSLG---SCVRLEQLGMNGNFFQGN----IPSSFSSLRGIENLDLSRNNLSGRIPKYFEN 585 (809)
Q Consensus 513 ~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 585 (809)
.+++|+.|+|++|.+....+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|||++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467888888888887654433332 467788888888888764 3344456688888888888877554444443
Q ss_pred -CCCCCeEEccCCc
Q 040849 586 -FLFLQNLNLSFNH 598 (809)
Q Consensus 586 -l~~L~~l~ls~N~ 598 (809)
+ ...++++.|+
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 4567777776
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-10 Score=122.14 Aligned_cols=86 Identities=10% Similarity=0.152 Sum_probs=49.0
Q ss_pred CCCCccEEEeecCcCCCCcchhcc---CCCCCceeccCCcccccccChhhh---cCCCCCcEEEccCccccccCCccccc
Q 040849 217 QLKRMRFIGFGVNKLSGEIPFSIY---NLSSLNYFEFPVNQLQGSLPSDLG---FTLPNLERLNLGENQFTGPIPASISN 290 (809)
Q Consensus 217 ~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~p~~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~ 290 (809)
.+++|++|++.+|.+.+..+..+. .+++|++|+++.|.+.+..+..+. ..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356666666666666543333332 356777777777777654322222 13677888888888776543333333
Q ss_pred CCCCceEecCCCc
Q 040849 291 ASHLMRLTIPING 303 (809)
Q Consensus 291 l~~L~~L~l~~n~ 303 (809)
.- ...++++.++
T Consensus 330 al-g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-PMKIDVSDSQ 341 (362)
T ss_dssp HC-CSEEECCSBC
T ss_pred Hc-CCEEEecCCc
Confidence 11 3456777665
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-07 Score=100.36 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=64.0
Q ss_pred CccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCC
Q 040849 387 PSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQ 466 (809)
Q Consensus 387 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 466 (809)
...+....+|+.+.+..+ +.......|.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +......+|.+++
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 445556667777776554 33355566777777888777665 55455667777777887777543 4445556777777
Q ss_pred CCcEEeCcCCcCccccCcchhcccCC
Q 040849 467 NLILLGLSNNNLTGTIPTEVIGLSSL 492 (809)
Q Consensus 467 ~L~~L~Ls~N~l~~~~p~~~~~l~~l 492 (809)
+|+.+++.++.++..-...|.++.+|
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccccccccccccceehhhhhcCCCCC
Confidence 77777776666553223333333444
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-09 Score=122.68 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=59.2
Q ss_pred cccceeccCCceeEEEEEECCCCceeEEEEe----------------------------cCCCCcceeeEeeeeeccccC
Q 040849 707 SLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 707 ~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
...+.||+|+||+||+|+.... .+|+| ++++|||||++..++..
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~---- 410 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYLDF----DVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD---- 410 (540)
T ss_dssp ---------CCEEEEEEECSSC----EEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE----
T ss_pred CCCCEEeeCCCEEEEEEEECCC----eEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe----
Confidence 3457899999999999964432 67777 35789999965555543
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|||||||++|+|.++++. +..|+.|+++||+|||
T Consensus 411 -~~~~~lVmE~~~ggsL~~~l~~------------~~~i~~qi~~aL~~LH 448 (540)
T 3en9_A 411 -LDNKRIMMSYINGKLAKDVIED------------NLDIAYKIGEIVGKLH 448 (540)
T ss_dssp -TTTTEEEEECCCSEEHHHHSTT------------CTHHHHHHHHHHHHHH
T ss_pred -CCccEEEEECCCCCCHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 4567999999999999999973 5579999999999998
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.7e-08 Score=99.56 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=66.7
Q ss_pred HHHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEecC------------------------------------
Q 040849 696 YQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKRS------------------------------------ 739 (809)
Q Consensus 696 ~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK~~------------------------------------ 739 (809)
...+......|...+.||+|+||.||+|+. .. ++.||||..
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~-~~--g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l 158 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYS-EK--FGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRAL 158 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEE-TT--TEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEe-CC--CCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 344455556677889999999999999997 33 348999911
Q ss_pred --CCCcceeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 740 --IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 740 --l~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++ | +++.+++. .+..|+|||||++|+|.+ +.. .+...++.|+++||+|||
T Consensus 159 ~~l~--~-~~v~~~~~------~~~~~lvmE~~~g~~L~~-l~~----------~~~~~i~~qi~~~l~~lH 210 (282)
T 1zar_A 159 QKLQ--G-LAVPKVYA------WEGNAVLMELIDAKELYR-VRV----------ENPDEVLDMILEEVAKFY 210 (282)
T ss_dssp HHTT--T-SSSCCEEE------EETTEEEEECCCCEEGGG-CCC----------SCHHHHHHHHHHHHHHHH
T ss_pred Hhcc--C-CCcCeEEe------ccceEEEEEecCCCcHHH-cch----------hhHHHHHHHHHHHHHHHH
Confidence 11 4 56666532 345699999999999998 531 124569999999999998
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-08 Score=111.74 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=50.4
Q ss_pred CC-CCcceeeEeeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 739 SI-RHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 739 ~l-~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++ +|+||+++++++.+ ++..|||||||+||+|.++|++. ..++.. +|+.||++||+|+|
T Consensus 297 ~~~~~~~i~~~~~~~ed-----~~~~yLVMEyv~G~~L~d~i~~~----~~l~~~---~I~~QIl~AL~ylH 356 (569)
T 4azs_A 297 QPPAGFDAPAVLAHGEN-----AQSGWLVMEKLPGRLLSDMLAAG----EEIDRE---KILGSLLRSLAALE 356 (569)
T ss_dssp SCCTTCCCCCEEEEEEC-----SSEEEEEEECCCSEEHHHHHHTT----CCCCHH---HHHHHHHHHHHHHH
T ss_pred hcCCCCCeeEEEEEEEE-----CCEEEEEEecCCCCcHHHHHHhC----CCCCHH---HHHHHHHHHHHHHH
Confidence 45 79999999999654 88999999999999999999854 346653 58999999999998
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.4e-09 Score=100.43 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=51.2
Q ss_pred cCccccCCCCccEEeCCCC-CCCcc----CCccccccccCCccccCCCcCccc----CCccccCCCcCcEEEcccCCCCC
Q 040849 91 LSPHIGNLSFLRVLDLKNN-SFRNE----IPQEIGYLFRLQFLWLDNNTFGGQ----IPDNISHCVNLESLRLGFNELVG 161 (809)
Q Consensus 91 ~~~~l~~l~~L~~LdLs~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 161 (809)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445666777888888887 77643 233344456666666666666532 22233444556666666665543
Q ss_pred C----CcccccCCCCCCEEEc--ccccCc
Q 040849 162 K----VPRKLGSLSKLRTLAV--HYNNLS 184 (809)
Q Consensus 162 ~----~p~~l~~l~~L~~L~L--s~N~l~ 184 (809)
. +...+...++|++|+| ++|.++
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2 2233444445555555 445554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.4e-08 Score=100.68 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=47.6
Q ss_pred CCCCCCEEEcccccccc--ccCccccCCCCCCEEeCcCCccccccchhhcCCC--CCCEEeCCCCCccccccc-------
Q 040849 513 ILKNLGVLDVSENKLSG--EIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLR--GIENLDLSRNNLSGRIPK------- 581 (809)
Q Consensus 513 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~LdLs~N~l~~~~p~------- 581 (809)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45566666666666665 3445566666677777777766654 2233333 677777777777665542
Q ss_pred ccccCCCCCeEE
Q 040849 582 YFENFLFLQNLN 593 (809)
Q Consensus 582 ~~~~l~~L~~l~ 593 (809)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355666666664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=5.7e-08 Score=93.19 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=70.5
Q ss_pred ccccCCCCCcEEeCcCC-cCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccc----cCcc
Q 040849 460 SSLGKCQNLILLGLSNN-NLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE----IPNS 534 (809)
Q Consensus 460 ~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 534 (809)
..+...++|++|+|++| .+...-...+ ...+...++|++|||++|++... +...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l---------------------~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 88 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKAC---------------------AEALKTNTYVKKFSIVGTRSNDPVAFALAEM 88 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHH---------------------HHHHTTCCSCCEEECTTSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHH---------------------HHHHHhCCCcCEEECcCCCCChHHHHHHHHH
Confidence 44566777888888877 7753211111 11223345566666666666532 2333
Q ss_pred ccCCCCCCEEeCcCCccccc----cchhhcCCCCCCEEeC--CCCCcccc----cccccccCCCCCeEEccCCccc
Q 040849 535 LGSCVRLEQLGMNGNFFQGN----IPSSFSSLRGIENLDL--SRNNLSGR----IPKYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 535 ~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdL--s~N~l~~~----~p~~~~~l~~L~~l~ls~N~l~ 600 (809)
+...+.|++|+|++|.|.+. +...+...+.|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44556677777777777643 3455666677777777 66777643 2344455577777777777764
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-07 Score=103.66 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=67.5
Q ss_pred hcccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCC-cceeeE---------
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRH-RNLVKI--------- 748 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H-~niv~l--------- 748 (809)
....|...+.||+|+||+||+|+....+. .|||| +.++| +|....
T Consensus 76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~--~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~ 153 (413)
T 3dzo_A 76 RPRTLVRGTVLGQEDPYAYLEATDQETGE--SFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFP 153 (413)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCC
T ss_pred CceeEEEecccccCCCEEEEEEEecCCCC--ceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccc
Confidence 34457888999999999999999765444 89999 23444 211110
Q ss_pred eeeeeccc-------cCC-----CceEEEEEeccCCCChhhhhcCC---CCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 749 ITSCASVD-------FQG-----NDFKALVYEFMVNGSLEEWLHPK---PEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 749 ~~~~~~~~-------~~~-----~~~~~lv~Ey~~~GsL~~~l~~~---~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...+.... ..+ ....+++|+++ +|+|.++++.. ......++|..+..|+.||++||+|||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 228 (413)
T 3dzo_A 154 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH 228 (413)
T ss_dssp CEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 01100000 000 12356777765 68999988411 112345889999999999999999998
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.2e-07 Score=97.22 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=66.8
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe---------cC-------------------------CCCc
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------RS-------------------------IRHR 743 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------~~-------------------------l~H~ 743 (809)
.+.....-|.+.+.||+|+||.||+|...+ ++.|||| +. ..|+
T Consensus 89 ~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~---G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~ 165 (397)
T 4gyi_A 89 THAARKDVYSVGSRIGVGKESDIMIVADEK---GKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFA 165 (397)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEECTT---CCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEEecCEeeeCCceEEEEEECCC---CCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 334444458899999999999999999543 3489999 00 1277
Q ss_pred ceeeEeeeeeccc-cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 744 NLVKIITSCASVD-FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 744 niv~l~~~~~~~~-~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+++++....... .-.....+|||||++|++|.++.. . +....++.|++.||.|||
T Consensus 166 nL~rL~~~gv~vp~p~~~~~~~LVME~i~G~~L~~l~~--------~--~~~~~l~~qll~~l~~lH 222 (397)
T 4gyi_A 166 FMKALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSS--------V--PDPASLYADLIALILRLA 222 (397)
T ss_dssp HHHHHHHTTCSCCCEEEEETTEEEEECCSCEEGGGCCC--------C--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeeeeccCceEEEEecCCccHhhhcc--------c--HHHHHHHHHHHHHHHHHH
Confidence 8887765432210 000111369999999999876542 1 124568899999999998
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-06 Score=89.09 Aligned_cols=87 Identities=21% Similarity=0.137 Sum_probs=58.4
Q ss_pred cccccceeccCCceeEEEEEECCCCceeE--EEEec------C-------------------------------------
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETL--VAVKR------S------------------------------------- 739 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~--vavK~------~------------------------------------- 739 (809)
-|...+.||+|+||.||+|.....+. . ||||. .
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~--~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 125 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGK--PVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLE 125 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTE--EEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCc--EeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHH
Confidence 36678899999999999999733334 6 99991 1
Q ss_pred -CCCcce--eeEeeeeeccccCCCceEEEEEeccCC-C----ChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 740 -IRHRNL--VKIITSCASVDFQGNDFKALVYEFMVN-G----SLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 740 -l~H~ni--v~l~~~~~~~~~~~~~~~~lv~Ey~~~-G----sL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++|+++ .+.+++ ...+|||||+.+ | +|.++... .++.++..++.|+++||+|||
T Consensus 126 ~l~~~~i~~p~~~~~---------~~~~lVmE~~g~~g~~~~~L~~~~~~-------~~~~~~~~i~~qi~~~l~~lH 187 (258)
T 1zth_A 126 RAKEAGVSVPQPYTY---------MKNVLLMEFIGEDELPAPTLVELGRE-------LKELDVEGIFNDVVENVKRLY 187 (258)
T ss_dssp HHHHTTCCCCCEEEE---------ETTEEEEECCEETTEECCBHHHHGGG-------GGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEEc---------CCCEEEEEecCCCCCccccHHHHhhc-------cChHHHHHHHHHHHHHHHHHH
Confidence 112322 122221 235899999953 4 66665431 234467889999999999998
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.4e-06 Score=77.24 Aligned_cols=82 Identities=5% Similarity=0.065 Sum_probs=41.2
Q ss_pred cCcEEEcccCCCCCCCcccccCCCCCCEEEccccc-CcccCCccCCCC----CCCCEEEcccCc-ccccCcccccCCCCc
Q 040849 148 NLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNN-LSGQIPSSFGNL----SSLEVLSASANQ-FVGQIPKTLSQLKRM 221 (809)
Q Consensus 148 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 221 (809)
.|++||++++.++...-..+.++++|++|+|++|. +++.--..++.+ ++|++|+|++|. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555444333444555556666665553 443333334433 246666666653 544333344555556
Q ss_pred cEEEeecC
Q 040849 222 RFIGFGVN 229 (809)
Q Consensus 222 ~~L~L~~n 229 (809)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 66655554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.72 E-value=1.5e-05 Score=74.18 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=53.1
Q ss_pred CCCCEEEccccccccccCccccCCCCCCEEeCcCCc-cccccchhhcCC----CCCCEEeCCCCC-cccccccccccCCC
Q 040849 515 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNF-FQGNIPSSFSSL----RGIENLDLSRNN-LSGRIPKYFENFLF 588 (809)
Q Consensus 515 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~LdLs~N~-l~~~~p~~~~~l~~ 588 (809)
..|+.||++++.++..--..+.++++|+.|+|+++. +++.--..+..+ ++|+.|||++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777777665555566677777777777764 655444445543 357777777764 66444445666777
Q ss_pred CCeEEccCC
Q 040849 589 LQNLNLSFN 597 (809)
Q Consensus 589 L~~l~ls~N 597 (809)
|++|++++.
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 777777765
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=6.4e-05 Score=71.39 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=31.4
Q ss_pred ccCCCCccEEeCCCC-CCCcc----CCccccccccCCccccCCCcCcccC----CccccCCCcCcEEEcccCCCC
Q 040849 95 IGNLSFLRVLDLKNN-SFRNE----IPQEIGYLFRLQFLWLDNNTFGGQI----PDNISHCVNLESLRLGFNELV 160 (809)
Q Consensus 95 l~~l~~L~~LdLs~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 160 (809)
+.+-+.|+.|+|++| .|... +-..+..-+.|+.|+|++|.|...- .+.+..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344556777777764 55421 2233344455555555555554221 112223344455555555443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0013 Score=58.20 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=34.6
Q ss_pred EEeCcCCccc-cccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccc
Q 040849 543 QLGMNGNFFQ-GNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 543 ~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
.++.+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555555554 23333222 246677777777776666667777777777777776654
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.002 Score=65.05 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=66.5
Q ss_pred HhcccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCC-CCcceeeEeeeeeccccCC
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSI-RHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l-~H~niv~l~~~~~~~~~~~ 759 (809)
...+.|+.....+.|+.+.||++... +. .+++| +.+ +|..+.++++++..
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~--~~--~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~----- 81 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGE--NE--NLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH----- 81 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECS--SC--EEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-----
T ss_pred HHhccceeEeeccCCCCCeEEEEECC--CC--cEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec-----
Confidence 34456888888898999999999843 22 78888 112 25667778887654
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+||||++|.+|.+.+.. ..+...++.+++++++.||
T Consensus 82 ~~~~~lv~e~i~G~~l~~~~~~---------~~~~~~~~~~l~~~l~~LH 122 (263)
T 3tm0_A 82 DGWSNLLMSEADGVLCSEEYED---------EQSPEKIIELYAECIRLFH 122 (263)
T ss_dssp TTEEEEEEECCSSEEHHHHCCT---------TTCHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCeehhhccCC---------cccHHHHHHHHHHHHHHHh
Confidence 5678999999999999876421 1123467889999999888
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00067 Score=64.37 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=46.3
Q ss_pred CCCCEEEcccccccccc----CccccCCCCCCEEeCcCCccccc----cchhhcCCCCCCEEeCCCC---Cccc----cc
Q 040849 515 KNLGVLDVSENKLSGEI----PNSLGSCVRLEQLGMNGNFFQGN----IPSSFSSLRGIENLDLSRN---NLSG----RI 579 (809)
Q Consensus 515 ~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N---~l~~----~~ 579 (809)
+.|+.|+|++|+|.... ...+..-+.|+.|+|++|.|.+. +-+++..-+.|+.|+|++| .+.. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 45566666666655322 22333445677777777776643 2334444566777777754 2332 23
Q ss_pred ccccccCCCCCeEEccCCc
Q 040849 580 PKYFENFLFLQNLNLSFNH 598 (809)
Q Consensus 580 p~~~~~l~~L~~l~ls~N~ 598 (809)
-..+..-+.|+.|+++.|.
T Consensus 150 a~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhCCCcCeEeccCCC
Confidence 3445556677777776553
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0026 Score=56.29 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcc
Q 040849 540 RLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLS 576 (809)
Q Consensus 540 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 576 (809)
+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555666666666555555666666666666666553
|
| >1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.022 Score=57.07 Aligned_cols=86 Identities=13% Similarity=0.039 Sum_probs=54.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------cCCCCcc--eeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSIRHRN--LVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l~H~n--iv~l~~~~~~~~~~~~~~~~ 764 (809)
.++......+.|..+.||++...++ . .+++| +.+++.+ +.+++++... ++..+
T Consensus 20 ~~~~~~~~~~gg~~~~v~~~~~~~g-~--~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~-----~~~~~ 91 (264)
T 1nd4_A 20 FGYDWAQQTIGCSDAAVFRLSAQGR-P--VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTE-----AGRDW 91 (264)
T ss_dssp TTCEEEECSCTTSSCEEEEEECTTS-C--CEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-----SSCEE
T ss_pred CCCceEecccCCCCceEEEEecCCC-C--eEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccC-----CCCCE
Confidence 3444433334566799999975433 2 58888 1222333 4457776543 45689
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||++|.++. ... .+ ...++.++++.++.||
T Consensus 92 ~v~e~i~G~~l~--~~~-------~~---~~~~~~~l~~~l~~lh 124 (264)
T 1nd4_A 92 LLLGEVPGQDLL--SSH-------LA---PAEKVSIMADAMRRLH 124 (264)
T ss_dssp EEEECCSSEETT--TSC-------CC---HHHHHHHHHHHHHHHT
T ss_pred EEEEecCCcccC--cCc-------CC---HhHHHHHHHHHHHHHh
Confidence 999999999884 221 12 2357888999999888
|
| >3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.046 Score=57.82 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=62.3
Q ss_pred ccceeccCCceeEEEEEECCCCceeEEEEecC-----------------------CC--CcceeeEeeeeeccccCCCce
Q 040849 708 LENLIGAGSFGSVYKGILNHDDHETLVAVKRS-----------------------IR--HRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 708 ~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK~~-----------------------l~--H~niv~l~~~~~~~~~~~~~~ 762 (809)
..+.++.|.++.||+.+..++ .+++|.. ++ +..+.++++++.... ..+.
T Consensus 42 ~~~~l~~G~sn~~y~v~~~~~----~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~--~~g~ 115 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTPGQ----TYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDES--VIGR 115 (359)
T ss_dssp EEEECCC-CCSCEEEEECSSC----EEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTT--TTSS
T ss_pred eEEEcCCcccceEEEEEECCc----eEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCC--ccCC
Confidence 357789999999999985432 4566511 12 345777787765411 1145
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+||||++|..+.+... ..++..++..++.++++.|+.||
T Consensus 116 ~~~vme~v~G~~l~~~~~------~~l~~~~~~~~~~~l~~~La~LH 156 (359)
T 3dxp_A 116 AFYIMEFVSGRVLWDQSL------PGMSPAERTAIYDEMNRVIAAMH 156 (359)
T ss_dssp CEEEEECCCCBCCCCTTC------TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCeecCCCcc------ccCCHHHHHHHHHHHHHHHHHHh
Confidence 799999999988754221 23678889999999999999998
|
| >4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A* | Back alignment and structure |
|---|
Probab=84.43 E-value=1.6 Score=43.53 Aligned_cols=84 Identities=17% Similarity=0.038 Sum_probs=53.0
Q ss_pred eeccCCce-eEEEEEECCCCceeEEEEe-----------------cCC-CCcceeeEeeeeeccccCCCceEEEEEeccC
Q 040849 711 LIGAGSFG-SVYKGILNHDDHETLVAVK-----------------RSI-RHRNLVKIITSCASVDFQGNDFKALVYEFMV 771 (809)
Q Consensus 711 ~ig~G~~g-~Vy~~~~~~~~~~~~vavK-----------------~~l-~H~niv~l~~~~~~~~~~~~~~~~lv~Ey~~ 771 (809)
.+..|..| .||+.....++. .+.+| +.+ .+--+-++++++.. ++..|+||||++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~--~~~lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~-----~~~~~lvme~l~ 103 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAP--ELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRT-----PDDAWLLTTAIP 103 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCC--CEEEEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEE-----TTEEEEEEECCC
T ss_pred EccCCCcCCeEEEEEecCCCe--EEEEEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEE-----CCeEEEEEEeeC
Confidence 44555555 699887544433 67787 111 12224456666654 567899999999
Q ss_pred CCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 772 NGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 772 ~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|.++.+..... ..+...++.++++.|+-||
T Consensus 104 G~~~~~~~~~~--------~~~~~~~~~~l~~~L~~Lh 133 (272)
T 4gkh_A 104 GKTAFQVLEEY--------PDSGENIVDALAVFLRRLH 133 (272)
T ss_dssp SEEHHHHHHHC--------GGGHHHHHHHHHHHHHHHH
T ss_pred CccccccccCC--------HHHHHHHHHHHHHHHHHhc
Confidence 98888765421 1234557788888887776
|
| >2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.03 E-value=0.62 Score=31.54 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=11.2
Q ss_pred EEehhhHHHHHHHHHHhhhhhhhccCC
Q 040849 650 LIIPIVTGILLVTGMSCLIITSWRSKS 676 (809)
Q Consensus 650 i~v~~~~~~~~~~~~~~~~~~~~r~~~ 676 (809)
++++++++++++++++..+++++|+|+
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 444444444443333333344444433
|
| >3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT} | Back alignment and structure |
|---|
Probab=82.47 E-value=2.5 Score=43.18 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=41.3
Q ss_pred cccceeccCCceeEEEEEECCCCceeEEEEe-----------------cCC---CCcceeeEeeeeeccccCCCceEEEE
Q 040849 707 SLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSI---RHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 707 ~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l---~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
...+.|+.|.+..+|+.... +. .+.+| +.+ ....+.+.++++.. ++..++|
T Consensus 39 ~~~~~l~gG~~n~~y~v~~~--~~--~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-----~g~~~lv 109 (312)
T 3jr1_A 39 KHKEKLYSGEMNEIWLINDE--VQ--TVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNS-----QGHSFLL 109 (312)
T ss_dssp CEEEEECCSSSSEEEEEESS--SC--EEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-----SSEEEEE
T ss_pred eeeEEeCCccceeeeEEEEC--CC--eEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-----CCceEEE
Confidence 34567899999999999842 22 67788 111 12446666766543 4678999
Q ss_pred EeccCCCCh
Q 040849 767 YEFMVNGSL 775 (809)
Q Consensus 767 ~Ey~~~GsL 775 (809)
|||+++..+
T Consensus 110 me~l~G~~~ 118 (312)
T 3jr1_A 110 LEALNKSKN 118 (312)
T ss_dssp EECCCCCCC
T ss_pred EEeccCCCC
Confidence 999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 809 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 9e-24 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.001 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-22 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-19 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-19 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-12 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-19 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-16 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-13 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 3e-18 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 8e-18 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 7e-17 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 8e-17 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 1e-15 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 1e-15 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 4e-15 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 4e-15 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 5e-15 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 8e-15 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 3e-14 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 4e-14 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 4e-14 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 6e-14 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 9e-14 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 2e-13 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 2e-13 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 2e-13 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 3e-13 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 3e-13 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 3e-13 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 5e-13 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 7e-13 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 8e-13 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 8e-13 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 1e-12 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 1e-12 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 1e-12 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 1e-12 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 1e-12 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 2e-12 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 2e-12 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 3e-12 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 3e-12 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 7e-12 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 7e-12 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 2e-11 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 3e-11 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 3e-11 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 4e-11 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 5e-11 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 8e-11 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 2e-10 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 3e-10 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 3e-10 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 8e-10 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 7e-09 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 1e-08 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 2e-08 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 1e-07 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 1e-07 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 1e-07 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-07 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 2e-07 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 2e-07 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 3e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 9e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 6e-07 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 7e-07 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 7e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 7e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 8e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 4e-06 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 6e-06 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 9e-06 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 9e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.004 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.004 | |
| d1zara2 | 191 | d.144.1.9 (A:91-281) Rio2 serine protein kinase C- | 3e-05 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 5e-05 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 1e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.003 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 100 bits (249), Expect = 9e-24
Identities = 74/325 (22%), Positives = 112/325 (34%), Gaps = 57/325 (17%)
Query: 31 NETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQ--WKGVTCSP--RHQRVTALLLPSLL 86
N D+ ALL+ K + + LSSW + C W GV C + RV L L L
Sbjct: 4 NPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 87 LQG--SLSPHIGNLSFLRVLDLKNN-SFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNI 143
L + + NL +L L + + IP I L +L +L++ + G IPD +
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 144 SHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSAS 203
S L +L +N L G +P + SL L + N +SG IP S+G+ S L
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 204 AN-----------------------QFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIY 240
+ + L + +
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 241 NLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIP 300
+LN + N++ G+LP L L L LN+ N G I
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEI---------------- 284
Query: 301 INGFSGKVPSFGNLHKLQWVSISMN 325
P GNL + + + N
Sbjct: 285 --------PQGGNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 89.0 bits (219), Expect = 7e-20
Identities = 71/274 (25%), Positives = 104/274 (37%), Gaps = 9/274 (3%)
Query: 366 GNLSTRLRILRVGNNQLFGN--IPSGLRNLVNLERLLLEGN-QFTGRIPGSIGDLHKLQR 422
+ R+ L + L IPS L NL L L + G G IP +I L +L
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 423 LGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTI 482
L + G IP + + L+TL F N L G++P S+ NL+ + N ++G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 483 PTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 542
P S L + +S+N+L G +P F L V +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 543 QLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGE 602
+ S LDL N + G +P+ FL +LN+SFN+ GE
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNL--NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 603 VPIKGVFSNSSAVSLDGNDNLCGGISELHLSTCS 636
+P G + N LCG L C+
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGS----PLPACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 31/185 (16%), Positives = 52/185 (28%), Gaps = 4/185 (2%)
Query: 53 LSSWNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRV-LDLKNNSF 111
L + ++S + + + + G++ G+ S L + + N
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 112 RNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLS 171
+IP L N G S + + L
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 172 KLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKL 231
L N + G +P L L L+ S N G+IP L+R + NK
Sbjct: 247 NGLDL--RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303
Query: 232 SGEIP 236
P
Sbjct: 304 LCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 39.3 bits (90), Expect = 0.001
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 2/134 (1%)
Query: 460 SSLGKCQNLILLGLSNNNLTG--TIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNL 517
+ + + L LS NL IP+ + L L+ N L G +P L L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 518 GVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSG 577
L ++ +SG IP+ L L L + N G +P S SSL + + N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 578 RIPKYFENFLFLQN 591
IP + +F L
Sbjct: 164 AIPDSYGSFSKLFT 177
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 98.5 bits (244), Expect = 1e-22
Identities = 81/380 (21%), Positives = 134/380 (35%), Gaps = 33/380 (8%)
Query: 226 FGVNKLSGEIPFS-IYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPI 284
G ++ + + + +++L + + G + + L NL ++N NQ T
Sbjct: 29 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEY-LNNLTQINFSNNQLTDIT 82
Query: 285 PASISNASHLMRLTIPINGFSGKVPSFG-------NLHKLQWVSISMNHLGNGEKDDLEF 337
P + N + L+ + + N + P L Q I
Sbjct: 83 P--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140
Query: 338 VNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLE 397
N++ + S L L G + L+ + R+ + + S L L NLE
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200
Query: 398 RLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGS 457
L+ NQ + P I L L L GN+ ++ +LT L L N +
Sbjct: 201 SLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256
Query: 458 IPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNL 517
P L L L L N ++ P L+ L+ +L N+ S LKNL
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNL 309
Query: 518 GVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSG 577
L + N +S P + S +L++L N SS ++L I L N +S
Sbjct: 310 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365
Query: 578 RIPKYFENFLFLQNLNLSFN 597
P N + L L+
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 88.9 bits (219), Expect = 2e-19
Identities = 85/409 (20%), Positives = 139/409 (33%), Gaps = 44/409 (10%)
Query: 141 DNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVL 200
++ + LG + V + L ++ TL + L++L +
Sbjct: 19 TALAEKMKTV---LGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQI 71
Query: 201 SASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLP 260
+ S NQ P L L ++ I N+++ P + + L
Sbjct: 72 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129
Query: 261 SDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWV 320
+ L + + + + NL L+ +
Sbjct: 130 NLTNLNRLELSSNTISDISALSG---------LTSLQQLSFGNQVTDLKPLANLTTLERL 180
Query: 321 SISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNN 380
IS N + + + LE L N + P + T L L + N
Sbjct: 181 DISSNKVSDISVLA--------KLTNLESLIATNNQISDITPL---GILTNLDELSLNGN 229
Query: 381 QLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGN 440
QL L +L NL L L NQ + P + L KL L L N+ P +
Sbjct: 230 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 283
Query: 441 LTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQ 500
LT L L ++N LE P S +NL L L NN++ P L+ L L +
Sbjct: 284 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVS--SLTKLQ-RLFFAN 338
Query: 501 NQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGN 549
N+++ S+ L N+ L N++S P L + R+ QLG+N
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 86.2 bits (212), Expect = 2e-18
Identities = 77/392 (19%), Positives = 137/392 (34%), Gaps = 40/392 (10%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156
L+ L + + + Q L ++ L D G + D + + NL +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSN 75
Query: 157 NELVGKVPRKLGSLSKLRTLAV------------HYNNLSGQIPSSFGNLSSLEVLSASA 204
N+L P L +L+KL + + + NL+G + + + +
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 205 NQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLG 264
+ T+S + + + G + L++L E +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 265 FTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISM 324
L NLE L NQ + P + ++L L++ N + + +L L + ++
Sbjct: 194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLAN 250
Query: 325 NHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFG 384
N + N + L ++L L + N + P + L+ + N
Sbjct: 251 NQISN--------LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 300
Query: 385 NIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLL 444
+ NL NL L L N + P + L KLQRL NK SS+ NLT +
Sbjct: 301 SPI---SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353
Query: 445 ITLSFDKNMLEGSIPSSLGKCQNLILLGLSNN 476
LS N + P L + LGL++
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 74.3 bits (181), Expect = 1e-14
Identities = 61/358 (17%), Positives = 120/358 (33%), Gaps = 36/358 (10%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
+ L+ L ++ NN + P + L +L + ++NN P + +L
Sbjct: 62 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKT 214
+ + + L L + N +S S K
Sbjct: 120 NQITDIDPLKNL----TNLNRLELSSNTISDISALSGLTSLQQLS-----FGNQVTDLKP 170
Query: 215 LSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLN 274
L+ L + + NK + L++L NQ+ P + NL+ L+
Sbjct: 171 LANLTTLERLDISSNK--VSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELS 225
Query: 275 LGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDD 334
L NQ ++++ ++L L + N S + L KL + + N +
Sbjct: 226 LNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQI------- 275
Query: 335 LEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLV 394
+++ + L L N + + + L L + N + P + +L
Sbjct: 276 ----SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLT 329
Query: 395 NLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452
L+RL N+ + S+ +L + L N+ P + NLT + L +
Sbjct: 330 KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 69.6 bits (169), Expect = 3e-13
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 17/206 (8%)
Query: 94 HIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLR 153
+ L+ L L NN + P I L L L+ N ++ NL L
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLD 247
Query: 154 LGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPK 213
L N++ P L L+KL L + N +S P L++L L + NQ P
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 303
Query: 214 TLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERL 273
+ LK + ++ N +S P S +L+ L F N++ S L L N+ L
Sbjct: 304 S--NLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLA-NLTNINWL 356
Query: 274 NLGENQFTGPIPASISNASHLMRLTI 299
+ G NQ + P ++N + + +L +
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGL 380
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 65.8 bits (159), Expect = 6e-12
Identities = 50/194 (25%), Positives = 71/194 (36%), Gaps = 30/194 (15%)
Query: 56 WNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEI 115
+ Q +T + L L L+ + +L+ L LDL NN N
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 257
Query: 116 PQEIGYLFRLQFLWLDNNTFGGQIP--------------------DNISHCVNLESLRLG 155
P + L +L L L N P IS+ NL L L
Sbjct: 258 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315
Query: 156 FNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTL 215
FN + P + SL+KL+ L N +S SS NL+++ LSA NQ P L
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 369
Query: 216 SQLKRMRFIGFGVN 229
+ L R+ +G
Sbjct: 370 ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 54.2 bits (129), Expect = 3e-08
Identities = 50/255 (19%), Positives = 95/255 (37%), Gaps = 22/255 (8%)
Query: 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK 429
++ L+ + G+ L NL ++ NQ T P + +L KL + + N+
Sbjct: 44 DQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99
Query: 430 FLGEIPSSIGNLTLLITLSFDKNMLEGSIP------------SSLGKCQNLILLGLSNNN 477
P + +TL ++ + +++ L L
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159
Query: 478 LTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGS 537
G T++ L++L+ L + + S L NL L + N++S P +
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI-- 217
Query: 538 CVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597
L++L +NGN + + +SL + +LDL+ N +S P L L L N
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273
Query: 598 HFEGEVPIKGVFSNS 612
P+ G+ + +
Sbjct: 274 QISNISPLAGLTALT 288
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 52.7 bits (125), Expect = 8e-08
Identities = 78/369 (21%), Positives = 126/369 (34%), Gaps = 40/369 (10%)
Query: 265 FTLPNLE---RLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVS 321
FT L + LG+ T + S ++ + L G + L+ L ++
Sbjct: 16 FTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQIN 72
Query: 322 ISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQ 381
S N L + + L N ++L + +N N + P A T L +
Sbjct: 73 FSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124
Query: 382 LFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNL 441
+ N + L + I L L L + NL
Sbjct: 125 IDPLKNLTNLNRLELSSNTIS----------DISALSGLTSLQQLSFGNQVTDLKPLANL 174
Query: 442 TLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQN 501
T L L N + + K NL L +NN ++ P ++ ++L L L+ N
Sbjct: 175 TTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGIL--TNLD-ELSLNGN 229
Query: 502 QLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSS 561
QL L NL LD++ N++S P L +L +L + N P +
Sbjct: 230 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 283
Query: 562 LRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGND 621
L + NL+L+ N N L L L FN+ P+ S + L +
Sbjct: 284 LTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFAN 338
Query: 622 NLCGGISEL 630
N +S L
Sbjct: 339 NKVSDVSSL 347
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 1e-19
Identities = 55/272 (20%), Positives = 94/272 (34%), Gaps = 13/272 (4%)
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKL 317
++P + +R+ L N+ + AS +L L + N + + L
Sbjct: 25 AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 318 QWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRV 377
++ D F RL L ++ L + L+ L +
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGL----GRLHTLHLD-RCGLQELGPGLFRGLAALQYLYL 136
Query: 378 GNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSS 437
+N L R+L NL L L GN+ + + LH L RL L N+ P +
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196
Query: 438 IGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLD 497
+L L+TL N L +L + L L L++N L +
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFR 254
Query: 498 LSQNQLNGTLPSNFGILKNLGVLDVSENKLSG 529
S +++ +LP L + ++ N L G
Sbjct: 255 GSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 1e-13
Identities = 40/196 (20%), Positives = 60/196 (30%), Gaps = 5/196 (2%)
Query: 111 FRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSL 170
R+ P L RL L LD P L+ L L N L L
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 171 SKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNK 230
L L +H N +S +F L SL+ L N+ P L R+ + N
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 231 LSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISN 290
LS ++ L +L Y N L++ ++ +P ++
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLPQRLAG 270
Query: 291 ASHLMRLTIPINGFSG 306
+ N G
Sbjct: 271 ---RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 1e-12
Identities = 46/227 (20%), Positives = 75/227 (33%), Gaps = 5/227 (2%)
Query: 56 WNYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEI 115
W +S + + L + L+ L L L L +
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 116 PQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRT 175
P L LQ+L+L +N D NL L L N + R L L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 176 LAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEI 235
L +H N ++ P +F +L L L AN + L+ L+ ++++ N +
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241
Query: 236 PFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTG 282
+ + L F +++ SLP L + L N G
Sbjct: 242 R-ARPLWAWLQKFRGSSSEVPCSLPQRLA----GRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 3e-11
Identities = 50/247 (20%), Positives = 79/247 (31%), Gaps = 28/247 (11%)
Query: 410 IPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNM---------------- 453
+P I QR+ L GN+ +S L L N+
Sbjct: 26 VPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 454 ---------LEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLN 504
L P++ L L L L P GL++L L N L
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQ 142
Query: 505 GTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRG 564
F L NL L + N++S + L++L ++ N P +F L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 565 IENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLC 624
+ L L NNLS + LQ L L+ N + + + +++ ++ C
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262
Query: 625 GGISELH 631
L
Sbjct: 263 SLPQRLA 269
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.6 bits (213), Expect = 4e-19
Identities = 51/235 (21%), Positives = 95/235 (40%), Gaps = 6/235 (2%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426
+L +L + NN++ +NL NL L+L N+ + PG+ L KL+RL L
Sbjct: 28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87
Query: 427 GNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV 486
N+ L L + + S+ + L + + L + +G
Sbjct: 88 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAF 146
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
G+ LS ++ + T+P G+ +L L + NK++ SL L +LG+
Sbjct: 147 QGMKKLSYI-RIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202
Query: 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601
+ N S ++ + L L+ N L ++P + ++Q + L N+
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.4 bits (189), Expect = 5e-16
Identities = 57/305 (18%), Positives = 104/305 (34%), Gaps = 15/305 (4%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELV 160
LRV+ + ++P+++ L L NN + + NL +L L N++
Sbjct: 12 LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKR 220
P L KL L + N L L L V + + L+Q+
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128
Query: 221 MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
+ K SG + + L+Y + ++P L P+L L+L N+
Sbjct: 129 VELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKI 183
Query: 281 TGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHK-LQWVSISMNHLGNGEKDDLEFVN 339
T AS+ ++L +L + N S L+ + ++ N L +
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243
Query: 340 -SLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQL--FGNIPSGLRNLVNL 396
+V + I N+F P + + +N + + PS R +
Sbjct: 244 IQVVYLHNNNISAIGSNDF---CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300
Query: 397 ERLLL 401
+ L
Sbjct: 301 AAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.5 bits (171), Expect = 1e-13
Identities = 48/303 (15%), Positives = 82/303 (27%), Gaps = 38/303 (12%)
Query: 63 CQWKGVTCSPRH---------QRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRN 113
C + V CS L L + + NL L L L NN
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 114 EIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKL 173
P L +L+ L+L N L ++ V L + +
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129
Query: 174 RTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSG 233
L + SG +F + L + + L + G NK++
Sbjct: 130 E-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG---NKITK 185
Query: 234 EIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASH 293
S+ L++L L L N + S++N H
Sbjct: 186 VDAASLKGLNNLAK-------------------------LGLSFNSISAVDNGSLANTPH 220
Query: 294 LMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGIN 353
L L + N + +Q V + N++ +D + + +
Sbjct: 221 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280
Query: 354 INN 356
N
Sbjct: 281 SNP 283
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.1 bits (165), Expect = 5e-13
Identities = 48/284 (16%), Positives = 96/284 (33%), Gaps = 20/284 (7%)
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232
L + N ++ F NL +L L N+ P + L ++ + N+L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 233 GEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNAS 292
L L E + +++ S+ + L + L + +G +
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 293 HLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGI 352
L + I + G L + + N + + SL + L LG+
Sbjct: 151 KLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAA------SLKGLNNLAKLGL 202
Query: 353 NINNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTG---- 408
+ N+ + ++ N + LR L + NN+L +P GL + ++ + L N +
Sbjct: 203 SFNSISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260
Query: 409 --RIPGSIGDLHKLQRLGLQGNK--FLGEIPSSIGNLTLLITLS 448
PG + L N + PS+ + + +
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.6 bits (206), Expect = 3e-18
Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 31/135 (22%)
Query: 697 QNLFKATDGFSLENL-IGAGSFGSVYKGILNHDDHETLVAVK------------------ 737
+ LF D + ++ +G G+FGSV +G+ + VA+K
Sbjct: 1 KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60
Query: 738 ---RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQR 794
+ + +V++I C + LV E G L ++L K E +
Sbjct: 61 QIMHQLDNPYIVRLIGVCQAEAL------MLVMEMAGGGPLHKFLVGKRE---EIPVSNV 111
Query: 795 LSIAVDVASALDYLH 809
+ V+ + YL
Sbjct: 112 AELLHQVSMGMKYLE 126
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.9 bits (204), Expect = 8e-18
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 695 SYQNLFKATDGFS---------LENLIGAGSFGSVYKGILNHDD-HETLVAVKR------ 738
++++ +A F+ +E +IGAG FG V G L E VA+K
Sbjct: 8 TFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT 67
Query: 739 ---------------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKP 783
H N++ + + ++ EFM NGSL+ +L
Sbjct: 68 EKQRRDFLSEASIMGQFDHPNVIHLEGVV-----TKSTPVMIITEFMENGSLDSFLRQN- 121
Query: 784 EAPRNSNLLQRLSIAVDVASALDYLH 809
++Q + + +A+ + YL
Sbjct: 122 --DGQFTVIQLVGMLRGIAAGMKYLA 145
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.2 bits (195), Expect = 7e-17
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 36/126 (28%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHR 743
++ IG+GSFG+VYKG + D VAVK R RH
Sbjct: 10 ITVGQRIGSGSFGTVYKGKWHGD-----VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHV 64
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
N++ + + A+V ++ SL LH +++ + IA A
Sbjct: 65 NILLFM------GYSTAPQLAIVTQWCEGSSLYHHLH---IIETKFEMIKLIDIARQTAQ 115
Query: 804 ALDYLH 809
+DYLH
Sbjct: 116 GMDYLH 121
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.9 bits (194), Expect = 8e-17
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 28/122 (22%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVK 747
L IG G FG V G VAVK +RH NLV+
Sbjct: 9 LKLLQTIGKGEFGDVMLGDYRG----NKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQ 64
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDY 807
++ + +V E+M GSL ++L + + + L ++DV A++Y
Sbjct: 65 LLGVI----VEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGD--CLLKFSLDVCEAMEY 118
Query: 808 LH 809
L
Sbjct: 119 LE 120
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.8 bits (186), Expect = 1e-15
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ L +GAG FG V+ G N T VAVK + ++H+
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYNGH---TKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR 69
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + ++ E+M NGSL ++L + + L +A +A
Sbjct: 70 LVRLY------AVVTQEPIYIITEYMENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEG 121
Query: 805 LDYLH 809
+ ++
Sbjct: 122 MAFIE 126
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (186), Expect = 1e-15
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 29/121 (23%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVKR-------------------SIRHRNLVKI 748
L+ IG G FG V++G VAVK +RH N++
Sbjct: 7 LQESIGKGRFGEVWRGKWRG----EEVAVKIFSSREERSWFREAEIYQTVMLRHENILGF 62
Query: 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
I + + LV ++ +GSL ++L+ + +A+ AS L +L
Sbjct: 63 IAADNKDNGTWTQL-WLVSDYHEHGSLFDYLNRYTVTVE-----GMIKLALSTASGLAHL 116
Query: 809 H 809
H
Sbjct: 117 H 117
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.1 bits (184), Expect = 4e-15
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 32/129 (24%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSI 740
D F + +GAG+ G V+K H ++A K
Sbjct: 4 KDDDFEKISELGAGNGGVVFKVS--HKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC 61
Query: 741 RHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVD 800
+V + + ++ E M GSL++ L P +++
Sbjct: 62 NSPYIVGFYGAF-----YSDGEISICMEHMDGGSLDQVLKKAGRIPEQ----ILGKVSIA 112
Query: 801 VASALDYLH 809
V L YL
Sbjct: 113 VIKGLTYLR 121
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (183), Expect = 4e-15
Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 44/145 (30%)
Query: 704 DGFSLENLIGAGSFGSVYKGI---LNHDDHETLVAVK----------------------R 738
+ S +GAG+FG V + L D VAVK
Sbjct: 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82
Query: 739 SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL------ 792
H N+V ++ +C ++ E+ G L +L K ++ S
Sbjct: 83 LGNHMNIVNLLGAC-----TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED 137
Query: 793 --------QRLSIAVDVASALDYLH 809
LS + VA + +L
Sbjct: 138 DELALDLEDLLSFSYQVAKGMAFLA 162
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.9 bits (181), Expect = 5e-15
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 27/128 (21%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIR 741
+ + + IG GS+G K D ++ K R ++
Sbjct: 4 EDYEVLYTIGTGSYGRCQKIRRKSDG--KILVWKELDYGSMTEAEKQMLVSEVNLLRELK 61
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
H N+V+ + N +V E+ G L + + + + L + +
Sbjct: 62 HPNIVRYYDRIID---RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQL 118
Query: 802 ASALDYLH 809
AL H
Sbjct: 119 TLALKECH 126
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.2 bits (179), Expect = 8e-15
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 32/123 (26%)
Query: 709 ENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLV 746
+ +G+G+FG+V KG VAVK + + + +V
Sbjct: 12 DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIV 71
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
++I + LV E G L ++L + + V+ +
Sbjct: 72 RMI------GICEAESWMLVMEMAELGPLNKYLQQNRHVKDK----NIIELVHQVSMGMK 121
Query: 807 YLH 809
YL
Sbjct: 122 YLE 124
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.1 bits (176), Expect = 3e-14
Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 39/140 (27%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR----------------------SIR 741
+ +++IG G+FG V K + D A+KR
Sbjct: 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL--------- 792
H N++ ++ +C + + L E+ +G+L ++L +
Sbjct: 70 HPNIINLLGAC-----EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTL 124
Query: 793 ---QRLSIAVDVASALDYLH 809
Q L A DVA +DYL
Sbjct: 125 SSQQLLHFAADVARGMDYLS 144
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (177), Expect = 4e-14
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKII 749
++ +IG GSFG VY+ L LVA+K R + H N+V++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSG--ELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLR 79
Query: 750 TSCASV-DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
S + + + LV +++ H A + ++ + +L Y+
Sbjct: 80 YFFYSSGEKKDEVYLNLVLDYVPETVYRVARH-YSRAKQTLPVIYVKLYMYQLFRSLAYI 138
Query: 809 H 809
H
Sbjct: 139 H 139
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.6 bits (175), Expect = 4e-14
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 32/127 (25%)
Query: 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRH 742
++ IG G+ G+VY + E VA++ R ++
Sbjct: 19 KKKYTRFEKIGQGASGTVYTAMDVATGQE--VAIRQMNLQQQPKKELIINEILVMRENKN 76
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
N+V + S D +V E++ GSL + + Q ++ +
Sbjct: 77 PNIVNYLDSY-----LVGDELWVVMEYLAGGSLTDVVTETCMDEG-----QIAAVCRECL 126
Query: 803 SALDYLH 809
AL++LH
Sbjct: 127 QALEFLH 133
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (174), Expect = 6e-14
Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 38/143 (26%)
Query: 690 SVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHET--LVAVKR--------- 738
++LR+ K T+ F ++G+G+FG+VYKG+ + + VA+K
Sbjct: 1 ALLRI-----LKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKA 54
Query: 739 ------------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAP 786
S+ + ++ +++ C + Q L+ + M G L +++
Sbjct: 55 NKEILDEAYVMASVDNPHVCRLLGICLTSTVQ------LITQLMPFGCLLDYVREH---K 105
Query: 787 RNSNLLQRLSIAVDVASALDYLH 809
N L+ V +A ++YL
Sbjct: 106 DNIGSQYLLNWCVQIAKGMNYLE 128
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.8 bits (173), Expect = 9e-14
Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 34/130 (26%)
Query: 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RS 739
FS IG GSFG+VY + +VA+K +
Sbjct: 14 EKLFSDLREIGHGSFGAVYFARDVRNS--EVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK 71
Query: 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV 799
+RH N ++ LV E+ + + + K + ++ ++
Sbjct: 72 LRHPNTIQYRGCY-----LREHTAWLVMEYCLGSASDLLEVHK----KPLQEVEIAAVTH 122
Query: 800 DVASALDYLH 809
L YLH
Sbjct: 123 GALQGLAYLH 132
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.2 bits (169), Expect = 2e-13
Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 31/130 (23%)
Query: 704 DG--FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RS 739
DG + IG GSF +VYKG+ E VA +
Sbjct: 7 DGRFLKFDIEIGRGSFKTVYKGLDTETTVE--VAWCELQDRKLTKSERQRFKEEAEMLKG 64
Query: 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV 799
++H N+V+ S S +G LV E M +G+L+ +L S
Sbjct: 65 LQHPNIVRFYDSWES-TVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIK----VLRSWCR 119
Query: 800 DVASALDYLH 809
+ L +LH
Sbjct: 120 QILKGLQFLH 129
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.1 bits (171), Expect = 2e-13
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 21/118 (17%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITS 751
++G G G V + A+K R+ + ++V+I+
Sbjct: 16 TSQVLGLGINGKVLQIFNKRTQ--EKFALKMLQDCPKARREVELHWRASQCPHIVRIVDV 73
Query: 752 CASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
++ + G +V E + G L + + + + I + A+ YLH
Sbjct: 74 YENL-YAGRKCLLIVMECLDGGELFSRIQDRGDQAFTER--EASEIMKSIGEAIQYLH 128
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.4 bits (169), Expect = 2e-13
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 28/125 (22%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR-------------------SIRHRN 744
++++ +G G +G VY+G+ + VAVK I+H N
Sbjct: 17 TDITMKHKLGGGQYGEVYEGV--WKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 74
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV+++ C ++ EFM G+L ++L ++ L +A ++SA
Sbjct: 75 LVQLLGVC-----TREPPFYIITEFMTYGNLLDYLRECNRQEVSAV--VLLYMATQISSA 127
Query: 805 LDYLH 809
++YL
Sbjct: 128 MEYLE 132
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.4 bits (169), Expect = 3e-13
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 49/150 (32%)
Query: 704 DGFSLENLIGAGSFGSVYKGIL---NHDDHETLVAVK----------------------R 738
+ ++G+G+FG V + VAVK +
Sbjct: 37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96
Query: 739 SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL------ 792
H N+V ++ +C + L++E+ G L +L K E +
Sbjct: 97 LGSHENIVNLLGAC-----TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKR 151
Query: 793 -------------QRLSIAVDVASALDYLH 809
L A VA +++L
Sbjct: 152 LEEEEDLNVLTFEDLLCFAYQVAKGMEFLE 181
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.2 bits (166), Expect = 3e-13
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 30/123 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV 746
+ +G G FG V G + VA+K ++ H LV
Sbjct: 6 LTFLKELGTGQFGVVKYGKWR---GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLV 62
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
++ C ++ E+M NG L +L Q L + DV A++
Sbjct: 63 QLYGVCTK-----QRPIFIITEYMANGCLLNYLREM---RHRFQTQQLLEMCKDVCEAME 114
Query: 807 YLH 809
YL
Sbjct: 115 YLE 117
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 69.7 bits (170), Expect = 3e-13
Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 30/126 (23%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHR 743
D + + +G+G+FG V++ + + K + H
Sbjct: 29 DYYDILEELGSGAFGVVHRCVEKATG--RVFVAKFINTPYPLDKYTVKNEISIMNQLHHP 86
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
L+ + + F+ L+ EF+ G L + + + + + ++
Sbjct: 87 KLINLHDA-----FEDKYEMVLILEFLSGGELFDRIAAEDYKM---SEAEVINYMRQACE 138
Query: 804 ALDYLH 809
L ++H
Sbjct: 139 GLKHMH 144
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.1 bits (166), Expect = 5e-13
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 33/137 (24%)
Query: 696 YQNL---FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------- 737
Y+++ D + + +G G+FG VYK + + L A K
Sbjct: 1 YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQ--NKETSVLAAAKVIDTKSEEELEDYMV 58
Query: 738 -----RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL 792
S H N+VK++ + + ++ EF G+++ + E R
Sbjct: 59 EIDILASCDHPNIVKLLDAFYY-----ENNLWILIEFCAGGAVDAVML---ELERPLTES 110
Query: 793 QRLSIAVDVASALDYLH 809
Q + AL+YLH
Sbjct: 111 QIQVVCKQTLDALNYLH 127
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (164), Expect = 7e-13
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR-------------------SIRHRN 744
+ LE +G G FG V+ G N T VA+K +RH
Sbjct: 17 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 73
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L + + L Q + +A +AS
Sbjct: 74 LVQLY------AVVSEEPIYIVTEYMSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASG 125
Query: 805 LDYLH 809
+ Y+
Sbjct: 126 MAYVE 130
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.3 bits (164), Expect = 8e-13
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 32/127 (25%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRH 742
+ + L +G G++G V + + VAVK + + H
Sbjct: 5 EDWDLVQTLGEGAYGEVQLAVNRVTEEA--VAVKIVDMKRAVDCPENIKKEICINKMLNH 62
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
N+VK + + + L E+ G L + + P P +
Sbjct: 63 ENVVKFYGHR-----REGNIQYLFLEYCSGGELFDRIEPDIGMPEP----DAQRFFHQLM 113
Query: 803 SALDYLH 809
+ + YLH
Sbjct: 114 AGVVYLH 120
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 68.2 bits (166), Expect = 8e-13
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 30/126 (23%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHR 743
D + + +G G+FG V++ A K +RH
Sbjct: 26 DHYDIHEELGTGAFGVVHRVTERATG--NNFAAKFVMTPHESDKETVRKEIQTMSVLRHP 83
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
LV + + F+ ++ ++YEFM G L E + + + + + V
Sbjct: 84 TLVNLHDA-----FEDDNEMVMIYEFMSGGELFEKVADEHNKM---SEDEAVEYMRQVCK 135
Query: 804 ALDYLH 809
L ++H
Sbjct: 136 GLCHMH 141
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 67.1 bits (163), Expect = 1e-12
Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 30/130 (23%)
Query: 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RS 739
+D + L ++G G V+ + VAVK +
Sbjct: 6 SDRYELGEILGFGGMSEVHLARDLRLHRD--VAVKVLRADLARDPSFYLRFRREAQNAAA 63
Query: 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV 799
+ H +V + + + G +V E++ +L + +H + + + +
Sbjct: 64 LNHPAIVAVYDTGEAETPAGPLP-YIVMEYVDGVTLRDIVHTEGPMTPK----RAIEVIA 118
Query: 800 DVASALDYLH 809
D AL++ H
Sbjct: 119 DACQALNFSH 128
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 1e-12
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 35/134 (26%)
Query: 706 FSLENLIGAGSFGSVYKGIL---NHDDHETLVAVKR---------------------SIR 741
++ +G GSFG VY+G+ D+ ET VA+K
Sbjct: 22 ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFN 81
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL------QRL 795
++V+++ ++ E M G L+ +L A N+ +L + +
Sbjct: 82 CHHVVRLLGVV-----SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 136
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 137 QMAGEIADGMAYLN 150
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.8 bits (165), Expect = 1e-12
Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 37/132 (28%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------- 737
+ FS+ +IG G FG VY + A+K
Sbjct: 4 NDFSVHRIIGRGGFGEVYGCRKADTG--KMYAMKCLDKKRIKMKQGETLALNERIMLSLV 61
Query: 738 RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSI 797
+ +V + + F D + + + M G L L +
Sbjct: 62 STGDCPFIVCMSYA-----FHTPDKLSFILDLMNGGDLHYHLSQH----GVFSEADMRFY 112
Query: 798 AVDVASALDYLH 809
A ++ L+++H
Sbjct: 113 AAEIILGLEHMH 124
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.6 bits (162), Expect = 1e-12
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 30/123 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV 746
+ IG+G FG V+ G + D VA+K + H LV
Sbjct: 7 LTFVQEIGSGQFGLVHLGYWLNKD---KVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLV 63
Query: 747 KIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
++ C LV+EFM +G L ++L + L + +DV +
Sbjct: 64 QLYGVC-----LEQAPICLVFEFMEHGCLSDYLRTQRGLFAAE---TLLGMCLDVCEGMA 115
Query: 807 YLH 809
YL
Sbjct: 116 YLE 118
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.7 bits (162), Expect = 1e-12
Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 33/130 (25%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETL-VAVK-----------------------RS 739
L +G GSFG V +G + +T+ VAVK S
Sbjct: 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67
Query: 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV 799
+ HRNL+++ + + +V E GSL + L + L AV
Sbjct: 68 LDHRNLIRLYGVVLTPPMK------MVTELAPLGSLLDRLRKH---QGHFLLGTLSRYAV 118
Query: 800 DVASALDYLH 809
VA + YL
Sbjct: 119 QVAEGMGYLE 128
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (161), Expect = 2e-12
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 31/128 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHE-TLVAVK---------------------RSIR 741
+ L IG G FG V++GI ++ VA+K R
Sbjct: 7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
H ++VK+I + ++ E G L +L + + +L + A +
Sbjct: 67 HPHIVKLI------GVITENPVWIIMELCTLGELRSFLQVRKYSL---DLASLILYAYQL 117
Query: 802 ASALDYLH 809
++AL YL
Sbjct: 118 STALAYLE 125
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.2 bits (161), Expect = 2e-12
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 32/128 (25%)
Query: 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIR 741
D + +++G G+F V LVA+K I+
Sbjct: 8 RDIYDFRDVLGTGAFSEVILAEDKRTQ--KLVAIKCIAKKALEGKEGSMENEIAVLHKIK 65
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
H N+V + ++ L+ + + G L + + K + V
Sbjct: 66 HPNIVALDDI-----YESGGHLYLIMQLVSGGELFDRIVEKGFYTER----DASRLIFQV 116
Query: 802 ASALDYLH 809
A+ YLH
Sbjct: 117 LDAVKYLH 124
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.4 bits (159), Expect = 3e-12
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 34/129 (26%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSI 740
+ F + +G G FG+VY ++A+K +
Sbjct: 6 EDFEIGRPLGKGKFGNVYLAREKQSK--FILALKVLFKAQLEKAGVEHQLRREVEIQSHL 63
Query: 741 RHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVD 800
RH N++++ L+ E+ G++ L + + + +
Sbjct: 64 RHPNILRLYGYF-----HDATRVYLILEYAPLGTVYRELQKLSKFDEQ----RTATYITE 114
Query: 801 VASALDYLH 809
+A+AL Y H
Sbjct: 115 LANALSYCH 123
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (161), Expect = 3e-12
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 29/124 (23%)
Query: 708 LENLIGAGSFGSVYKGIL-NHDDHETLVAVKR---------------------SIRHRNL 745
+IG G FG VY G L ++D + AVK H N+
Sbjct: 31 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 90
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
+ ++ C + +V +M +G L ++ + N + + + VA +
Sbjct: 91 LSLLGIC----LRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGM 143
Query: 806 DYLH 809
+L
Sbjct: 144 KFLA 147
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (157), Expect = 7e-12
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 34/132 (25%)
Query: 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------- 737
K + F ++G GSF +V E A+K
Sbjct: 5 KRPEDFKFGKILGEGSFSTVVLARELATSRE--YAIKILEKRHIIKENKVPYVTRERDVM 62
Query: 738 RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSI 797
+ H VK+ + FQ ++ + NG L +++
Sbjct: 63 SRLDHPFFVKLYFT-----FQDDEKLYFGLSYAKNGELLKYIRKIGSFDET----CTRFY 113
Query: 798 AVDVASALDYLH 809
++ SAL+YLH
Sbjct: 114 TAEIVSALEYLH 125
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.9 bits (157), Expect = 7e-12
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 44/145 (30%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHE-----TLVAVK--------------------- 737
D L +G G+FG V D + T VAVK
Sbjct: 13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72
Query: 738 -RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL---- 792
+H+N++ ++ +C + ++ E+ G+L E+L + +
Sbjct: 73 KMIGKHKNIINLLGACTQ-----DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHN 127
Query: 793 --------QRLSIAVDVASALDYLH 809
+S A VA ++YL
Sbjct: 128 PEEQLSSKDLVSCAYQVARGMEYLA 152
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (153), Expect = 2e-11
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 31/127 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDH--ETLVAVKR---------------------SIRH 742
+ + +IGAG FG VYKG+L E VA+K H
Sbjct: 9 VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH 68
Query: 743 RNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVA 802
N++++ + ++ E+M NG+L+++L E ++LQ + + +A
Sbjct: 69 HNIIRLEGVISK-----YKPMMIITEYMENGALDKFLR---EKDGEFSVLQLVGMLRGIA 120
Query: 803 SALDYLH 809
+ + YL
Sbjct: 121 AGMKYLA 127
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.5 bits (154), Expect = 3e-11
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 29/125 (23%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ + + +G G FG V++ + K RHRN
Sbjct: 5 EKYMIAEDLGRGEFGIVHRCVETSSKKT--YMAKFVKVKGTDQVLVKKEISILNIARHRN 62
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
++ + S F+ + +++EF+ + E ++ + N + +S V A
Sbjct: 63 ILHLHES-----FESMEELVMIFEFISGLDIFERIN---TSAFELNEREIVSYVHQVCEA 114
Query: 805 LDYLH 809
L +LH
Sbjct: 115 LQFLH 119
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.6 bits (151), Expect = 3e-11
Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 49/150 (32%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHE---TLVAVKR---------------------S 739
+ IG G+FG V++ T+VAVK
Sbjct: 13 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 72
Query: 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLH------------------- 780
+ N+VK++ CA L++E+M G L E+L
Sbjct: 73 FDNPNIVKLLGVCAV-----GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRA 127
Query: 781 -PKPEAPRNSNLLQRLSIAVDVASALDYLH 809
P + ++L IA VA+ + YL
Sbjct: 128 RVSSPGPPPLSCAEQLCIARQVAAGMAYLS 157
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (152), Expect = 4e-11
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 29/133 (21%)
Query: 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------- 737
+F ++ + IG G++G V N + VA+K
Sbjct: 2 QVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNK--VRVAIKKISPFEHQTYCQRTLREIKI 59
Query: 738 -RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLS 796
RH N++ I + + LV M L + L + +
Sbjct: 60 LLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLM-GADLYKLLKTQHLSND-----HICY 113
Query: 797 IAVDVASALDYLH 809
+ L Y+H
Sbjct: 114 FLYQILRGLKYIH 126
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (150), Expect = 5e-11
Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 41/143 (28%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHE---TLVAVKR---------------------- 738
D L +G G+FG V + D VAVK
Sbjct: 13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72
Query: 739 SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLH------------PKPEAP 786
H N+V ++ +C + ++ EF G+L +L P+
Sbjct: 73 IGHHLNVVNLLGAC----TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYK 128
Query: 787 RNSNLLQRLSIAVDVASALDYLH 809
L + + VA +++L
Sbjct: 129 DFLTLEHLICYSFQVAKGMEFLA 151
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 8e-11
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 35/130 (26%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RS 739
+ F L ++G GSFG V+ + A+K +
Sbjct: 2 EDFILHKMLGKGSFGKVFLAEFKKTNQF--FAIKALKKDVVLMDDDVECTMVEKRVLSLA 59
Query: 740 IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAV 799
H L + + Q + V E++ G L + + L + A
Sbjct: 60 WEHPFLTHMFCTF-----QTKENLFFVMEYLNGGDLMYHIQSCHKFD----LSRATFYAA 110
Query: 800 DVASALDYLH 809
++ L +LH
Sbjct: 111 EIILGLQFLH 120
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.2 bits (145), Expect = 2e-10
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 28/124 (22%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNL 745
+ + L IG+GSFG +Y G E VA+K + ++
Sbjct: 7 NRYRLGRKIGSGSFGDIYLGTDIAAGEE--VAIKLECVKTKHPQLHIESKIYKMMQGGVG 64
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
+ I C D+ +V E + + + + L +A + S +
Sbjct: 65 IPTIRWC----GAEGDYNVMVMELLGPSLEDLFNFCSRKFSLK----TVLLLADQMISRI 116
Query: 806 DYLH 809
+Y+H
Sbjct: 117 EYIH 120
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 59.7 bits (144), Expect = 3e-10
Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 31/131 (23%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHR 743
+ + + ++G G V + I E AVK +++
Sbjct: 3 ENYEPKEILGRGVSSVVRRCIHKPTCKE--YAVKIIDVTGGGSFSAEEVQELREATLKEV 60
Query: 744 NLVKIITSCASV-----DFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIA 798
++++ ++ ++ ++ N F LV++ M G L ++L K + I
Sbjct: 61 DILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEK----ETRKIM 116
Query: 799 VDVASALDYLH 809
+ + LH
Sbjct: 117 RALLEVICALH 127
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 60.2 bits (145), Expect = 3e-10
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 30/133 (22%)
Query: 695 SYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------- 737
S+ + D + L +G G + V++ I + + V VK
Sbjct: 26 SHVVEWGNQDDYQLVRKLGRGKYSEVFEAI--NITNNEKVVVKILKPVKKKKIKREIKIL 83
Query: 738 -RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLS 796
N++ + + ALV+E + N ++ +
Sbjct: 84 ENLRGGPNIITLADIV---KDPVSRTPALVFEHVNNTDFKQLYQTLTDY-------DIRF 133
Query: 797 IAVDVASALDYLH 809
++ ALDY H
Sbjct: 134 YMYEILKALDYCH 146
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (141), Expect = 8e-10
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 29/134 (21%)
Query: 701 KATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR---------------------- 738
+A + IG G++G V+K + VA+KR
Sbjct: 4 RADQQYECVAEIGEGAYGKVFKARDLKNGGR-FVALKRVRVQTGEEGMPLSTIREVAVLR 62
Query: 739 ---SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRL 795
+ H N+V++ C LV+E +
Sbjct: 63 HLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVP---EPGVPTETIK 119
Query: 796 SIAVDVASALDYLH 809
+ + LD+LH
Sbjct: 120 DMMFQLLRGLDFLH 133
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (134), Expect = 7e-09
Identities = 15/135 (11%), Positives = 41/135 (30%), Gaps = 29/135 (21%)
Query: 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------- 737
+ +++ + + + +G+G++GSV VAVK
Sbjct: 11 KTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTG--LRVAVKKLSRPFQSIIHAKRTYREL 68
Query: 738 ---RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQR 794
+ ++H N++ ++ + ++ L + +
Sbjct: 69 RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDD-----HV 123
Query: 795 LSIAVDVASALDYLH 809
+ + L Y+H
Sbjct: 124 QFLIYQILRGLKYIH 138
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 1e-08
Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 31/136 (22%)
Query: 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------- 737
+ ++ + +G+G++G+V + VA+K
Sbjct: 11 KTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTG--AKVAIKKLYRPFQSELFAKRAYREL 68
Query: 738 ---RSIRHRNLVKIITSCASVDFQGNDFK-ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQ 793
+ +RH N++ ++ + + LV FM G+ L + + +
Sbjct: 69 RLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM--GTDLGKLMKHEKLGED----R 122
Query: 794 RLSIAVDVASALDYLH 809
+ + L Y+H
Sbjct: 123 IQFLVYQMLKGLRYIH 138
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 2e-08
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 36/125 (28%)
Query: 710 NLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRN 744
+ +G G F +VYK + + +VA+K + + H N
Sbjct: 4 DFLGEGQFATVYKARDKNTN--QIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN 61
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
++ ++ + +LV++FM + +
Sbjct: 62 IIGLLDAF-----GHKSNISLVFDFMETDLEVIIKDNS----LVLTPSHIKAYMLMTLQG 112
Query: 805 LDYLH 809
L+YLH
Sbjct: 113 LEYLH 117
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 1e-07
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 32/133 (24%)
Query: 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------- 737
F + IG+G+ G V D VA+K
Sbjct: 13 FTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRN--VAIKKLSRPFQNQTHAKRAYRELVLM 70
Query: 738 RSIRHRNLVKIITSCASVD-FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLS 796
+ + H+N++ ++ + LV E M + +
Sbjct: 71 KCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHE-------RMSY 123
Query: 797 IAVDVASALDYLH 809
+ + + +LH
Sbjct: 124 LLYQMLCGIKHLH 136
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 1e-07
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 37/132 (28%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------- 737
D + +G+G F V K + A K
Sbjct: 10 DYYDTGEELGSGQFAVVKKCREKSTGLQ--YAAKFIKKRRTKSSRRGVSREDIEREVSIL 67
Query: 738 RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSI 797
+ I+H N++ + ++ L+ E + G L ++L K + +
Sbjct: 68 KEIQHPNVITLHEV-----YENKTDVILILELVAGGELFDFLAEK----ESLTEEEATEF 118
Query: 798 AVDVASALDYLH 809
+ + + YLH
Sbjct: 119 LKQILNGVYYLH 130
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 50.2 bits (118), Expect = 1e-07
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 5/160 (3%)
Query: 473 LSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNF-GILKNLGVLDVSENKLSGEI 531
+ L IP + + L L+ N+L G L +L L++ N+L+G
Sbjct: 15 CTGRGLK-EIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70
Query: 532 PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQN 591
PN+ +++L + N + F L ++ L+L N +S +P FE+ L +
Sbjct: 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130
Query: 592 LNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNLCGGISELH 631
LNL+ N F + SL+G CG S++
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVR 170
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 6/171 (3%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLR-NLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGL 425
++ L + +N+L GL L +L +L L+ NQ TG P + +Q L L
Sbjct: 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85
Query: 426 QGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTE 485
NK L L TL+ N + +P S +L L L++N
Sbjct: 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-- 143
Query: 486 VIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLG 536
+ + L+ PS ++++ + D+ ++ NS G
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENSEG 191
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.2 bits (122), Expect = 2e-07
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 39/132 (29%)
Query: 706 FSLEN-----LIGAGSFGSVYKGILNHDDHETLVAVK----------------------- 737
+SL++ +G GSFG V+ H+ A+K
Sbjct: 1 YSLQDFQILRTLGTGSFGRVHLIRSRHNG--RYYAMKVLKKEIVVRLKQVEHTNDERLML 58
Query: 738 RSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSI 797
+ H ++++ + Q ++ +++ G L L P
Sbjct: 59 SIVTHPFIIRMWGTF-----QDAQQIFMIMDYIEGGELFSLLRKSQRFPNP----VAKFY 109
Query: 798 AVDVASALDYLH 809
A +V AL+YLH
Sbjct: 110 AAEVCLALEYLH 121
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 2e-07
Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 31/129 (24%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHR 743
+ IG G+FG V+K + VA+K + ++H
Sbjct: 12 YEKLAKIGQGTFGEVFKARHRKTGQK--VALKKVLMENEKEGFPITALREIKILQLLKHE 69
Query: 744 NLVKIITSCASVDFQGNDFKA---LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVD 800
N+V +I C + N K LV++F + + + + + +
Sbjct: 70 NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLS----EIKRVMQM 125
Query: 801 VASALDYLH 809
+ + L Y+H
Sbjct: 126 LLNGLYYIH 134
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 51.0 bits (121), Expect = 3e-07
Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 28/122 (22%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVK 747
+ + IG GSFG +++G + + VA+K + + +
Sbjct: 7 YKVGRRIGEGSFGVIFEGT--NLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIP 64
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDY 807
+ Q LV + + + + A + + +
Sbjct: 65 NVYYF----GQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVK----TVAMAAKQMLARVQS 116
Query: 808 LH 809
+H
Sbjct: 117 IH 118
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.8 bits (113), Expect = 3e-07
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554
L L+ L T+ + L + LD+S N+L P +L + LE + +
Sbjct: 2 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEV--LQASDNALE 56
Query: 555 IPSSFSSLRGIENLDLSRNNL-SGRIPKYFENFLFLQNLNLSFNHFEGEVPIKG 607
++L ++ L L N L + + L LNL N E I+
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 373 RILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLG 432
R+L + + L + L L+ + L L N+ P ++ L L+ L N
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL-- 55
Query: 433 EIPSSIGNLTLLITLSFDKNMLEG-SIPSSLGKCQNLILLGLSNNNLTG 480
E + NL L L N L+ + L C L+LL L N+L
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 2e-05
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESL 152
H+ L + LDL +N R P + L L+ L + + D +++ L+ L
Sbjct: 14 CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALENVDGVANLPRLQEL 70
Query: 153 RLGFNELVG-KVPRKLGSLSKLRTLAVHYNNLSGQ---IPSSFGNLSSLEVL 200
L N L + L S +L L + N+L + L S+ +
Sbjct: 71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.0 bits (98), Expect = 3e-05
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 471 LGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530
L L++ +LT + + L ++ +LDLS N+L P+ L+ L VL S+N L
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVT-HLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58
Query: 531 IPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFL 589
+ ++ L N Q S + L+L N+L E +
Sbjct: 59 DGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 174 RTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP--KTLSQLKRMRFIGFGVNKL 231
R L + + +L+ + L + L S N+ P L L+ ++ + +
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 232 SGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTG 282
G L N+LQ S + P L LNL N
Sbjct: 59 DGVANLPRLQELLLCN-----NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 6e-04
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVG 161
RVL L + + + L + L L +N P ++ LE L+ N L
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57
Query: 162 KVPRKLGSLSKLRTLAVHYNNL-SGQIPSSFGNLSSLEVLSASANQFVG 209
+L +L+ L + N L + L +L+ N
Sbjct: 58 VDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 9e-04
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 399 LLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSI 458
L L T + + L + L L N+ L +P ++ L L L N
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA--LEN 57
Query: 459 PSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG 505
+ L L L NN L + + + + L+L N L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 50.2 bits (118), Expect = 5e-07
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 498 LSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPS 557
N + + S + +L L+VS NKL E+P RLE+L + N +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321
Query: 558 SFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLS 595
+L+ L + N L P E+ +++L ++
Sbjct: 322 LPQNLK---QLHVEYNPLRE-FPDIPES---VEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 449 FDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLP 508
+ N I S +L L +SNN L +P L L S N L +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLE-RLIASFNHLA-EVP 320
Query: 509 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMN 547
+ +NL L V N L E P+ S +E L MN
Sbjct: 321 E---LPQNLKQLHVEYNPLR-EFPDIPES---VEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 25/166 (15%), Positives = 43/166 (25%), Gaps = 9/166 (5%)
Query: 9 NCFFIFCCFSFSLQSTDYMHKSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQWKGV 68
L + + +T +A D
Sbjct: 194 LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 253
Query: 69 TCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFL 128
+ L + L L++ NN E+P RL+ L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERL 309
Query: 129 WLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLR 174
N ++P+ NL+ L + +N L + P S+ LR
Sbjct: 310 IASFNHL-AEVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.7 bits (109), Expect = 6e-06
Identities = 49/325 (15%), Positives = 92/325 (28%), Gaps = 18/325 (5%)
Query: 148 NLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
L L L +P L +L N+L+ ++P +L SL V + +
Sbjct: 39 QAHELELNNLGL-SSLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93
Query: 208 VGQIPKTLSQLKR--MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF 265
P + S + N S + P + + ++
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 266 TLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKL--QWVSIS 323
LP L+ L + L +I + + +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 324 MNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLF 383
+ ++ + +L + + + E + + + L N
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 384 GNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTL 443
I S +LE L + N+ +P +L+RL N L E+P NL
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNH-LAEVPELPQNLK- 327
Query: 444 LITLSFDKNMLEGSIPSSLGKCQNL 468
L + N L P ++L
Sbjct: 328 --QLHVEYNPLR-EFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 404 NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLG 463
N + I L+ L + NK L E+P+ L L N L +P
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLE---RLIASFNHLA-EVPELP- 323
Query: 464 KCQNLILLGLSNNNLTGTIPTEVIGLSSLSI 494
QNL L + N L P + L +
Sbjct: 324 --QNLKQLHVEYNPLR-EFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 6e-05
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 129 WLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIP 188
N +I +LE L + N+L+ ++P +L L +N+L+ ++P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA-EVP 320
Query: 189 SSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRF 223
NL L V N + P ++ +R
Sbjct: 321 ELPQNLKQLHV---EYNPLR-EFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 6e-05
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 370 TRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNK 429
L L V NN+L +P+ L ERL+ N +P L++L ++ N
Sbjct: 284 PSLEELNVSNNKL-IELPALPPRL---ERLIASFNHLA-EVPELPQ---NLKQLHVEYNP 335
Query: 430 F--LGEIPSSIGNLTL 443
+IP S+ +L +
Sbjct: 336 LREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 56/321 (17%), Positives = 93/321 (28%), Gaps = 28/321 (8%)
Query: 253 NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFG 312
L SLP P+LE L N T +P + L L + N
Sbjct: 48 LGLS-SLPELP----PHLESLVASCNSLT-ELPELPQS---LKSLLVDNNNLKALSDLPP 98
Query: 313 NLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRL 372
L L + + L + + + N S +L + + L
Sbjct: 99 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 158
Query: 373 RILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLG 432
+ L N + L + + +L L + N
Sbjct: 159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218
Query: 433 EIPSSIGNLTLLITLSFDKNMLEG--------SIPSSLGKCQNLILLGLSNNNLTGTIPT 484
L + ++ ++ E + L N + I +
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278
Query: 485 EVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 544
SL L++S N+L LP+ L L S N L+ E+P + L+QL
Sbjct: 279 LCDLPPSLE-ELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQL 329
Query: 545 GMNGNFFQG--NIPSSFSSLR 563
+ N + +IP S LR
Sbjct: 330 HVEYNPLREFPDIPESVEDLR 350
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 49.5 bits (117), Expect = 6e-07
Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 34/128 (26%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIR 741
+ + IG G++G VYK +++ A+K + ++
Sbjct: 2 EKYHGLEKIGEGTYGVVYKA---QNNYGETFALKKIRLEKEDEGIPSTTIREISILKELK 58
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
H N+VK+ + LV+E + + + + S + +
Sbjct: 59 HSNIVKLYDVIHT-----KKRLVLVFEHLDQDLKKLLDVCE----GGLESVTAKSFLLQL 109
Query: 802 ASALDYLH 809
+ + Y H
Sbjct: 110 LNGIAYCH 117
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 7e-07
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 32/128 (25%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIR 741
+ F IG G++G VYK +VA+K + +
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTG--EVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 742 HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
H N+VK++ + LV+EF+ + L++++ L++ +
Sbjct: 60 HPNIVKLLDVI-----HTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKS--YLFQL 111
Query: 802 ASALDYLH 809
L + H
Sbjct: 112 LQGLAFCH 119
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 7e-07
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 33/126 (26%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHR 743
+ IG G++G+V+K +VA+K + ++H+
Sbjct: 4 YEKLEKIGEGTYGTVFKAKNRETH--EIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61
Query: 744 NLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVAS 803
N+V++ + LV+EF + + + + S +
Sbjct: 62 NIVRLHDV-----LHSDKKLTLVFEFCDQDLKKYFDSCN----GDLDPEIVKSFLFQLLK 112
Query: 804 ALDYLH 809
L + H
Sbjct: 113 GLGFCH 118
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 7e-07
Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 5/186 (2%)
Query: 367 NLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ 426
+L IL + N L+ + L L +L L+ + T G L L L L
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS 85
Query: 427 GNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEV 486
N+ L + + S+P + + N T+P +
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
+ + L L+ N L L+NL L + EN L IP L +
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 547 NGNFFQ 552
+GN +
Sbjct: 203 HGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 8e-07
Identities = 48/240 (20%), Positives = 79/240 (32%), Gaps = 12/240 (5%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
+P L + L L N ++ +L +L L + G L +L
Sbjct: 25 LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLG 80
Query: 446 TLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG 505
TL N L+ +L N ++P + L L N+L
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKT 138
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565
P L L ++ N L+ L L+ L + N IP F +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Query: 566 ENLDLSRNNL--SGRIPKYFENFLFLQNLNLSFNHFEGEVPIKGVFSNSSAVSLDGNDNL 623
L N + I YF +LQ+ + ++ V +K + SN ++V D +D
Sbjct: 198 PFAFLHGNPWLCNCEI-LYFRR--WLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKF 254
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 36/207 (17%), Positives = 58/207 (28%), Gaps = 24/207 (11%)
Query: 413 SIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLG 472
+ + + L +P + L +N+L ++L L L
Sbjct: 5 EVSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 473 LSNNNLTGTIPTEVIGLSSLSIYLDLSQ--------------------NQLNGTLPSNFG 512
L LT + + N+L
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 513 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSR 572
L L L + N+L P L +LE+L + N + L ++ L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 573 NNLSGRIPKYFENFLFLQNLNLSFNHF 599
N+L IPK F L L N +
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 36/180 (20%), Positives = 57/180 (31%), Gaps = 5/180 (2%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELV 160
+L L N + RL L LD L +L L N+L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 161 GKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKR 220
+L L L V +N L+ + L L+ L N+ P L+ +
Sbjct: 91 SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 221 MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
+ + N L+ + L +L+ N L ++P F L L N +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 33/203 (16%), Positives = 56/203 (27%), Gaps = 23/203 (11%)
Query: 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA 202
+S + + L +P L L + N L ++ + L L+
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 203 S-ANQFVGQIPKTLSQLKRMRFIGFGVNKLSG-------------------EIPFSIYNL 242
A Q+ TL L + + L +P
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 243 SSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPIN 302
+ +LP L P LE+L+L N T ++ +L L + N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 303 GFSGKVPSFGNLHKLQWVSISMN 325
F H L + + N
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGN 205
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 22/106 (20%)
Query: 491 SLSI-YLDLSQNQLNGT-LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNG 548
SL I LD+ +L+ +L+ V+ + + L+ +
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI------------- 47
Query: 549 NFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNL 594
S+ + L+L N L L + +
Sbjct: 48 -------SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 86
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 5e-05
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 101 LRVLDLKNNSFRNE-IPQEIGYLFRLQFLWLDNNTFGGQ----IPDNISHCVNLESLRLG 155
++ LD++ + + + L + Q + LD+ I + L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 156 FNELVGKVPRKLGSLSKLRTLAVHYNNLSGQ 186
NEL + + + + +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 1e-04
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 147 VNLESLRLGFNELVGK-VPRKLGSLSKLRTLAVHYNNLSGQ----IPSSFGNLSSLEVLS 201
++++SL + EL L L + + + + L+ I S+ +L L+
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 202 ASANQFVGQIPKTLSQL 218
+N+ + Q
Sbjct: 62 LRSNELGDVGVHCVLQG 78
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 1e-04
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 94 HIGNLSFLRVLDLKNNSFRNEIPQEIGYLFR----LQFLWLDNNTFGGQIPDNISHCV-- 147
S LRVL L + + + L+ L L NN G + V
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 148 ---NLESLRLGFNELVGKVPRKLGSLSKLR 174
LE L L ++ +L +L K +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 9/109 (8%)
Query: 123 FRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNEL----VGKVPRKLGSLSKLRTLAV 178
++ L++ L L L ++ + L + LR L +
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 404
Query: 179 HYNNLSGQIPSSFG-----NLSSLEVLSASANQFVGQIPKTLSQLKRMR 222
N L LE L + ++ L L++ +
Sbjct: 405 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 495 YLDLSQNQLNGT----LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR-----LEQLG 545
L L+ ++ + L + +L LD+S N L L VR LEQL
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432
Query: 546 MNGNFFQGNIPSSFSSLR 563
+ ++ + +L
Sbjct: 433 LYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 125 LQFLWLDNNTFGGQ----IPDNISHCVNLESLRLGFNELVGKVPRKLGS-----LSKLRT 175
L+ LWL + + + +L L L N L +L L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 176 LAVHYNNLSGQIPSSFGNLS----SLEVLS 201
L ++ S ++ L SL V+S
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 467 NLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG----TLPSNFGILKNLGVLDV 522
++ L + L+ E++ L + L L + S + L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 523 SENKLSGEIPNSLGS-----CVRLEQLGMNGNFFQ 552
N+L + + ++++L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 363 EAVGNLSTRLRILRVGNNQL----FGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLH 418
+ +G + LR+L + + + ++ + L +L L L N + +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 419 K-----LQRLGLQGNKFLGEIPSSIGNL 441
+ L++L L + E+ + L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 8e-04
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 347 LELLGININNFGGMLPEAVGNLSTRLRILRVGNNQL----FGNIPSGLRNLVNLERLLLE 402
++ L I + L + +++R+ + L +I S LR L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 403 GNQFTGRIPGSIGDLHKLQRLGLQ 426
N+ + + +Q
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQ 87
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 0.002
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 537 SCVRLEQLGMNGNFFQGN----IPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLF---- 588
L L + + + ++ + + LDLS N L +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 589 -LQNLNLSFNHFEGEVP 604
L+ L L ++ E+
Sbjct: 427 LLEQLVLYDIYWSEEME 443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.002
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 22/105 (20%)
Query: 394 VNLERLLLEGNQFT-GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKN 452
++++ L ++ + + R + L + Q + L I
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI-------------- 47
Query: 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVI-GLSSLSIYL 496
S+L L L L +N L V+ GL + S +
Sbjct: 48 ------SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 86
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.003
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 57 NYSRHFCQWKGVTCSPRHQRVTALLLPSLLLQG---------SLSPHIGNLSFLRVLDLK 107
S + + GV + +L L L SL+ + LR LDL
Sbjct: 346 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 405
Query: 108 NNSFRNEIPQEIGYLFR-----LQFLWLDNNTFGGQIPDNI 143
NN + ++ R L+ L L + + ++ D +
Sbjct: 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 4e-06
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 33/131 (25%)
Query: 704 DGFSLENLIGAGSFGSVYKGI-LNHDDHETLVAVK------------------------R 738
+ F L ++G G++G V+ ++ D L A+K
Sbjct: 24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83
Query: 739 SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIA 798
IR + + FQ L+ +++ G L L + + +
Sbjct: 84 HIRQSPFLVTLHYA----FQTETKLHLILDYINGGELFTHLSQRERFTEH----EVQIYV 135
Query: 799 VDVASALDYLH 809
++ AL++LH
Sbjct: 136 GEIVLALEHLH 146
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (110), Expect = 6e-06
Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 34/129 (26%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSI 740
+ F L+G G+FG V A+K ++
Sbjct: 5 NDFDYLKLLGKGTFGKVILVREKATGRY--YAMKILRKEVIIAKDEVAHTVTESRVLQNT 62
Query: 741 RHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVD 800
RH L + + Q +D V E+ G L L + + +
Sbjct: 63 RHPFLTALKYAF-----QTHDRLCFVMEYANGGELFFHLSRERVFTEE----RARFYGAE 113
Query: 801 VASALDYLH 809
+ SAL+YLH
Sbjct: 114 IVSALEYLH 122
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (108), Expect = 9e-06
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 38/132 (28%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKR--------------------------- 738
+ + L+G+G FGSVY GI D+ VA+K
Sbjct: 6 YQVGPLLGSGGFGSVYSGIRVSDN--LPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 63
Query: 739 -SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSI 797
S +++++ D L+ E + S
Sbjct: 64 VSSGFSGVIRLLDWFER-----PDSFVLILERPEPVQDLFDFITE---RGALQEELARSF 115
Query: 798 AVDVASALDYLH 809
V A+ + H
Sbjct: 116 FWQVLEAVRHCH 127
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (109), Expect = 9e-06
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 16/120 (13%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------RSIRHRNLVKII 749
D F +G GSFG V H + A+K ++ + +++ +
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVK--HKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV 98
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
V + + ++ + + A + +YLH
Sbjct: 99 NFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH 158
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 44.6 bits (104), Expect = 1e-05
Identities = 31/217 (14%), Positives = 59/217 (27%), Gaps = 21/217 (9%)
Query: 392 NLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK 451
L N ++ + T + + DL + L G + I + L LI L
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTG-VTTI-EGVQYLNNLIGLELKD 72
Query: 452 NMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQ----------- 500
N + P + L + I + ++
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 501 --NQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSS 558
+ + + + +S L + +L L + N P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 559 FSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLS 595
+SL + + L N +S P N L + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.5 bits (101), Expect = 4e-05
Identities = 32/216 (14%), Positives = 69/216 (31%), Gaps = 14/216 (6%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
L N ++ G++ T + + ++ + L+ G + + L+ L + + N
Sbjct: 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74
Query: 327 LGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNI 386
+ + + + S L ++ + + + + +
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134
Query: 387 PSGLRNLVNLERL-------LLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIG 439
L + N+ L L + +L KL L NK P +
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192
Query: 440 NLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSN 475
+L LI + N + P L NL ++ L+N
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 0.002
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 129 WLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIP 188
+L +++ L +L+ N++ P L SL L + + N +S P
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Query: 189 SSFGNLSSLEVLSASANQ 206
N S+L +++ + NQ
Sbjct: 213 --LANTSNLFIVTLT-NQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.003
Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 23/217 (10%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156
L+ + ++ + + Q L + L + + + NL L L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLS 216
N++ P K + L+ + I + + + L
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 217 QLKRMRFIGFGVNKL--------------SGEIPFSIYNLSSLNYFEFPVNQLQGSLPSD 262
L ++ L + NLS L + N++ P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192
Query: 263 LGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTI 299
+LPNL ++L NQ + P ++N S+L +T+
Sbjct: 193 ---SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 34/216 (15%), Positives = 71/216 (32%), Gaps = 11/216 (5%)
Query: 95 IGNLSFLRVLDLK-NNSFRNEIPQEIGYLFRLQFLWLDNNTF-GGQIPDNISHCVNLESL 152
G L V+ + SF ++ E FR+Q + L N+ + +S C L++L
Sbjct: 17 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVH--YNNLSGQIPSSFGNLSSLEVLSA------SA 204
L L + L S L L + + + + S L+ L+ +
Sbjct: 77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 136
Query: 205 NQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLG 264
+ + ++ G+ N ++ + +L + + + + +
Sbjct: 137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 196
Query: 265 FTLPNLERLNL-GENQFTGPIPASISNASHLMRLTI 299
F L L+ L+L + L L +
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 4e-05
Identities = 34/284 (11%), Positives = 89/284 (31%), Gaps = 19/284 (6%)
Query: 272 RLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGE 331
L+L + + + ++ P + + + ++Q + +S + +
Sbjct: 4 TLDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI---- 58
Query: 332 KDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSG-- 389
+ L S+L+ L + + + S +R+ G +
Sbjct: 59 -EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117
Query: 390 -----LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLL 444
L L + + +L G + N ++ + + L
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177
Query: 445 ITLSFDKNML-EGSIPSSLGKCQNLILLGLSN-NNLTGTIPTEVIGLSSLSIYLDLSQNQ 502
+ L +++ + + L L LS ++ E+ + +L L +
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK-TLQVFGIV 236
Query: 503 LNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
+GTL + + L L ++ + + ++G+ E G+
Sbjct: 237 PDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 6e-05
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 443 LLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQ 502
L TL L + L Q +I + + + E + ++DLS +
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQ-HMDLSNSV 57
Query: 503 LNG-TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFF 551
+ TL L L + +LS I N+L L +L ++G
Sbjct: 58 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.004
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 520 LDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGR- 578
LD++ L ++ L S + +F + FS R ++++DLS + +
Sbjct: 5 LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62
Query: 579 IPKYFENFLFLQNLNLSFNHFEGEVP 604
+ LQNL+L +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIV 88
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.004
Identities = 35/259 (13%), Positives = 77/259 (29%), Gaps = 37/259 (14%)
Query: 339 NSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGN-IPSGLRNLVNLE 397
+ ++ P A R++ + + N+ + + + L L+
Sbjct: 15 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74
Query: 398 RLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK------ 451
L LEG + + I ++ L RL L G E + +
Sbjct: 75 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134
Query: 452 --------------------------NMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTE 485
N+ + + + + +C NL+ L LS++ + +
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194
Query: 486 VIGLSSLSIYLDLSQ-NQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 544
+ +L LS+ + G + L L V G + + L+
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ-- 252
Query: 545 GMNGNFFQGNIPSSFSSLR 563
+N + F + + +
Sbjct: 253 -INCSHFTTIARPTIGNKK 270
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.6 bits (102), Expect = 3e-05
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 25/123 (20%)
Query: 707 SLENLIGAGSFGSVYKGILNHDDHETLVAVK----------RSIRHRNLVKIITSCASVD 756
++ L+G G +V+ + + VK + R+ + S ++
Sbjct: 3 AIGKLMGEGKESAVFNC---YSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIR 59
Query: 757 FQGNDFKALV----------YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
N+F+AL Y + N L E + K + + + +
Sbjct: 60 SARNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKE--LYRVRVENPDEVLDMILEEVA 117
Query: 807 YLH 809
+
Sbjct: 118 KFY 120
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 5e-05
Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 8/136 (5%)
Query: 457 SIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLS-QNQLNGTLPSNFGILK 515
+ + K + L L L + +I + L+ ++ + TL +
Sbjct: 11 QLKLIMSKRYDGSQQALDLKGLR-----SDPDLVAQNIDVVLNRRSSMAATLRIIEENIP 65
Query: 516 NLGVLDVSENKLSG--EIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573
L L++S N+L ++ + + L+ L ++GN + +E L L N
Sbjct: 66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125
Query: 574 NLSGRIPKYFENFLFL 589
+LS +
Sbjct: 126 SLSDTFRDQSTYISAI 141
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 30/131 (22%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLV 746
+ L +G G F +V+ ++ T VA+K + + +
Sbjct: 15 YILVRKLGWGHFSTVWLAKDMVNN--THVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNT 72
Query: 747 K--------IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIA 798
K I+ + +G + +V F V G L K E R L+ I+
Sbjct: 73 KEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYE-HRGIPLIYVKQIS 131
Query: 799 VDVASALDYLH 809
+ LDY+H
Sbjct: 132 KQLLLGLDYMH 142
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 30/227 (13%), Positives = 56/227 (24%), Gaps = 8/227 (3%)
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKL 317
+PSDL N L + + S L ++ I N + + +
Sbjct: 22 EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78
Query: 318 QWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRV 377
+ I + N + E +L N L + I + + +
Sbjct: 79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138
Query: 378 GNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSS 437
+ + N L L N + + N
Sbjct: 139 NIHTIERNSFV--GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196
Query: 438 IGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPT 484
+ + L + + L + L S NL +PT
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLK-KLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 0.001
Identities = 13/76 (17%), Positives = 17/76 (22%)
Query: 126 QFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSG 185
LWL+ N + E N L S L + +
Sbjct: 156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215
Query: 186 QIPSSFGNLSSLEVLS 201
NL L S
Sbjct: 216 LPSYGLENLKKLRARS 231
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 32/213 (15%), Positives = 65/213 (30%), Gaps = 5/213 (2%)
Query: 386 IPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLI 445
IPS L N L + G+ L+++ + N L I + + + +
Sbjct: 23 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80
Query: 446 TLSFD---KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQ 502
N+L + + LL + ++ L + + + + N
Sbjct: 81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140
Query: 503 LNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSL 562
S G+ +L +++N + + E + N + F
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200
Query: 563 RGIENLDLSRNNLSGRIPKYFENFLFLQNLNLS 595
G LD+SR + EN L+ +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.003
Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Query: 104 LDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKV 163
L L N + + DNN D L + +
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217
Query: 164 PRKLGSLSKLRTLAVHYNNLSGQIPS 189
L +L KLR NL ++P+
Sbjct: 218 SYGLENLKKLRAR--STYNLK-KLPT 240
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.5 bits (90), Expect = 0.001
Identities = 42/338 (12%), Positives = 98/338 (28%), Gaps = 27/338 (7%)
Query: 101 LRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQ----IPDNISHCVNLESLRLGF 156
L++ + + + + ++ + L NT G + + +NI+ +LE
Sbjct: 10 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 157 N---ELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPK 213
+ ++P L L + + + + + S + + +
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128
Query: 214 TLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERL 273
+ L + N L N+L+ + T + L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188
Query: 274 NLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKD 333
+ + G P I + + L L + HLG+
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEG------------LAYCQELKVLDLQDNTFTHLGSSALA 236
Query: 334 DLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGL--- 390
+ L ++ ++ + L+ LR+ N++ + L
Sbjct: 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 296
Query: 391 --RNLVNLERLLLEGNQFT--GRIPGSIGDLHKLQRLG 424
+ +L L L GN+F+ + I ++ + G
Sbjct: 297 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.003
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 3/130 (2%)
Query: 170 LSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVN 229
+ R L + + I + L + + S N+ L+R++ + N
Sbjct: 17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLLVNNN 73
Query: 230 KLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASIS 289
++ L L N L D +L +L L + N T +
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Query: 290 NASHLMRLTI 299
+ ++ +
Sbjct: 134 VIYKVPQVRV 143
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 809 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.8 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.79 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.78 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.75 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.73 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.7 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.7 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.69 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.69 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.68 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.68 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.67 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.67 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.67 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.66 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.66 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.66 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.65 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.65 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.64 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.64 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.64 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.64 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.63 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.63 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.63 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.63 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.62 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.62 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.6 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.6 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.6 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.59 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.59 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.59 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.59 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.58 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.58 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.57 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.56 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.56 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.56 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.56 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.55 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.55 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.54 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.53 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.53 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.53 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.53 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.52 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.49 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.49 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.47 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.47 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.47 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.46 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.45 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.44 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.43 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.41 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.4 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.38 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.37 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.37 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.34 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.31 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.3 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.3 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.3 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.28 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.28 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 98.82 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 98.65 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.44 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.43 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.5 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.49 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.62 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.61 | |
| d1j7la_ | 263 | Type IIIa 3',5"-aminoglycoside phosphotransferase | 87.36 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=1.4e-43 Score=374.28 Aligned_cols=294 Identities=30% Similarity=0.529 Sum_probs=272.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCccccCCCCCCCCCCc--ccccccCCCC--CcEEEEECCCCCCcc--ccCccccCCCCcc
Q 040849 29 KSNETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQ--WKGVTCSPRH--QRVTALLLPSLLLQG--SLSPHIGNLSFLR 102 (809)
Q Consensus 29 ~~~~~~~~~ll~~k~~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~l~g--~~~~~l~~l~~L~ 102 (809)
-|.++||+||++||+++. ||. .+++|..++|||. |.||+|+..+ +||+.|+|++++++| .+|+.+++|++|+
T Consensus 2 ~c~~~e~~aLl~~k~~~~-~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~ 79 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHHCC-CCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence 489999999999999997 553 6899998899994 9999998644 489999999999998 5889999999999
Q ss_pred EEeCCC-CCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccc
Q 040849 103 VLDLKN-NSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN 181 (809)
Q Consensus 103 ~LdLs~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 181 (809)
+|||++ |+++|.+|.+|+++++|++|+|++|++.+..|..+..+..|+++++++|.+.+.+|..+.++++|+++++++|
T Consensus 80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n 159 (313)
T d1ogqa_ 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence 999997 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCccCCCCCCC-CEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccC
Q 040849 182 NLSGQIPSSFGNLSSL-EVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLP 260 (809)
Q Consensus 182 ~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 260 (809)
.+++.+|+.+..+.++ +.++++.|++++..|..+..+..+ .++++.+...+.+|..+..+++++.++++.|.+.+.+|
T Consensus 160 ~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 238 (313)
T d1ogqa_ 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998886 899999999999999999888755 79999999999999999999999999999999998766
Q ss_pred hhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEeccccC
Q 040849 261 SDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHL 327 (809)
Q Consensus 261 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l 327 (809)
. +. .+++|+.|+|++|+++|.+|..+.++++|++|++++|+++|.+|.++++++|+.+++++|+.
T Consensus 239 ~-~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 239 K-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp G-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred c-cc-cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcc
Confidence 4 44 68999999999999999999999999999999999999999999988899998888888863
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=5.1e-34 Score=300.58 Aligned_cols=259 Identities=30% Similarity=0.515 Sum_probs=240.2
Q ss_pred cCcEEEccCCcccc--cCCccccCCCCCCeeeCCC-ccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEE
Q 040849 371 RLRILRVGNNQLFG--NIPSGLRNLVNLERLLLEG-NQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447 (809)
Q Consensus 371 ~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 447 (809)
+++.|+|++|.+.| .+|..++++++|++|+|++ |+++|.+|..++++++|++|+|++|++.+..+..+..+..|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 48889999998887 5789999999999999987 89999999999999999999999999999999999999999999
Q ss_pred EcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccc
Q 040849 448 SFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKL 527 (809)
Q Consensus 448 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 527 (809)
++++|.+.+.+|..+.+++.|+.+++++|++++.+|..+..+..+...+++++|++++..|..+..+..+ .+++++|..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 9999999999999999999999999999999999999999998887899999999999999998887655 799999999
Q ss_pred ccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCCCC
Q 040849 528 SGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPIKG 607 (809)
Q Consensus 528 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~ 607 (809)
.+.+|..+..+++++.+++++|.+++.+| .+..+++|+.|||++|+++|.+|..|.++++|++|||++|+|+|.+|..+
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~ 288 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence 99999999999999999999999998766 58899999999999999999999999999999999999999999999887
Q ss_pred CCCCCCcccccCCCCCCCCccccCcccc
Q 040849 608 VFSNSSAVSLDGNDNLCGGISELHLSTC 635 (809)
Q Consensus 608 ~~~~~~~~~~~~n~~lc~~~~~~~~~~~ 635 (809)
.+.++...++.||+.+||.| ++.|
T Consensus 289 ~L~~L~~l~l~~N~~l~g~p----lp~c 312 (313)
T d1ogqa_ 289 NLQRFDVSAYANNKCLCGSP----LPAC 312 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTT----SSCC
T ss_pred cCCCCCHHHhCCCccccCCC----CCCC
Confidence 78889999999999999964 3566
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.97 E-value=6.8e-29 Score=269.26 Aligned_cols=191 Identities=29% Similarity=0.406 Sum_probs=121.8
Q ss_pred ccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCc
Q 040849 390 LRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLI 469 (809)
Q Consensus 390 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 469 (809)
+..+++++.+++++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|.+++.. .+..+++|+
T Consensus 193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~ 266 (384)
T d2omza2 193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLT 266 (384)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCS
T ss_pred cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCC
Confidence 4444555555555555554332 23445555555655555432 23455556666666666665432 255566666
Q ss_pred EEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCC
Q 040849 470 LLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGN 549 (809)
Q Consensus 470 ~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 549 (809)
.|++++|++++.. .+..+..+ ..+++++|++++. ..+..+++++.|++++|++++.. .+..+++|++|++++|
T Consensus 267 ~L~l~~~~l~~~~--~~~~~~~l-~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n 339 (384)
T d2omza2 267 ELKLGANQISNIS--PLAGLTAL-TNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANN 339 (384)
T ss_dssp EEECCSSCCCCCG--GGTTCTTC-SEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSS
T ss_pred EeeccCcccCCCC--cccccccc-ccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCC
Confidence 6666666665432 24455555 5667777776642 34666777888888888887653 3777888888888888
Q ss_pred ccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCC
Q 040849 550 FFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFN 597 (809)
Q Consensus 550 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N 597 (809)
++++ +| .++++++|++||+++|++++.+| +.++++|+.|++++|
T Consensus 340 ~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 340 KVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 8874 33 57888888888888888887665 778888888888887
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=3.5e-28 Score=263.54 Aligned_cols=166 Identities=28% Similarity=0.390 Sum_probs=102.9
Q ss_pred CCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEe
Q 040849 393 LVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLG 472 (809)
Q Consensus 393 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 472 (809)
.++|++|++++|.++. .+.+..+++|+.|++++|++++..+ +..+++|++|++++|++++.. .+..++.++.++
T Consensus 218 ~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~ 291 (384)
T d2omza2 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLE 291 (384)
T ss_dssp CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred cCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccc
Confidence 3444444444444442 1234444555555555555543322 444555555555555554332 245556666666
Q ss_pred CcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccc
Q 040849 473 LSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQ 552 (809)
Q Consensus 473 Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 552 (809)
++.|++++ ...+..++.+ +.|++++|++++.. .+..+++|++|++++|++++ ++ .+.++++|++|++++|+++
T Consensus 292 ~~~n~l~~--~~~~~~~~~l-~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~ 364 (384)
T d2omza2 292 LNENQLED--ISPISNLKNL-TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS 364 (384)
T ss_dssp CCSSCCSC--CGGGGGCTTC-SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred cccccccc--ccccchhccc-CeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC
Confidence 66666653 2234555566 56777777776543 26677888888888888874 33 5888888999999888888
Q ss_pred cccchhhcCCCCCCEEeCCCC
Q 040849 553 GNIPSSFSSLRGIENLDLSRN 573 (809)
Q Consensus 553 ~~~p~~~~~l~~L~~LdLs~N 573 (809)
+.+| +.++++|+.|+|++|
T Consensus 365 ~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 365 DLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp BCGG--GTTCTTCSEEECCCE
T ss_pred CChh--hccCCCCCEeeCCCC
Confidence 7665 788889999999887
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.1e-26 Score=236.84 Aligned_cols=228 Identities=25% Similarity=0.260 Sum_probs=170.2
Q ss_pred EEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEc-ccc
Q 040849 374 ILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSF-DKN 452 (809)
Q Consensus 374 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~~N 452 (809)
.++.++++++ .+|..+. +++++|+|++|+|+...+.+|.++++|++|++++|++.+..+..+..++.+..++. ..|
T Consensus 15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 3455555555 3444432 45677777777777666667777777777777777777777777777777777665 355
Q ss_pred cCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccC
Q 040849 453 MLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIP 532 (809)
Q Consensus 453 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 532 (809)
.++...|..|.++++|++|++++|.+....+..+.....+ +.+++++|++++..+..|..+++|+.|++++|++++..+
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~ 170 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred ccccccchhhcccccCCEEecCCcccccccccccchhccc-chhhhccccccccChhHhccccchhhcccccCcccccch
Confidence 6666667777777778888888877775555566666666 678888888877777778788888888888888887777
Q ss_pred ccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccccCCC
Q 040849 533 NSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEGEVPI 605 (809)
Q Consensus 533 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 605 (809)
..|.++++|+.+++++|++++..|..|.++++|++||+++|++++..|..|.++++|++|++++|++.+..+.
T Consensus 171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~ 243 (284)
T d1ozna_ 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (284)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence 8888888888888888888888888888888888888888888888888888888888888888888876553
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=9.1e-25 Score=228.34 Aligned_cols=272 Identities=23% Similarity=0.275 Sum_probs=218.0
Q ss_pred CcccccccCCCCCcEEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCcc
Q 040849 63 CQWKGVTCSPRHQRVTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDN 142 (809)
Q Consensus 63 c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 142 (809)
|.|.+|.|+.. +++ .+|+.+. +.+++|||++|+|+...+.+|.++++|++|++++|.+....|..
T Consensus 10 c~~~~~~C~~~------------~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~ 74 (305)
T d1xkua_ 10 CHLRVVQCSDL------------GLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74 (305)
T ss_dssp EETTEEECTTS------------CCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred ecCCEEEecCC------------CCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh
Confidence 78999999742 222 4566553 68999999999999777778999999999999999999888889
Q ss_pred ccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCccc--ccCcccccCCCC
Q 040849 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV--GQIPKTLSQLKR 220 (809)
Q Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~ 220 (809)
|.++++|++|++++|+++. +|..+ ...|+.|++++|.+.+..+..+.....++.++...|... ...+..+..+++
T Consensus 75 f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~ 151 (305)
T d1xkua_ 75 FAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151 (305)
T ss_dssp TTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred hhCCCccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc
Confidence 9999999999999999985 45433 358999999999999777777888889999999888643 445567888999
Q ss_pred ccEEEeecCcCCCCcchhccCCCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecC
Q 040849 221 MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIP 300 (809)
Q Consensus 221 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 300 (809)
|+.+++++|.++. +|.. .+++|+.|++++|...+..+..+. .++.++.|++++|.+++..+..+.++++|++|+++
T Consensus 152 L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~ 227 (305)
T d1xkua_ 152 LSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227 (305)
T ss_dssp CCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred cCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhh-ccccccccccccccccccccccccccccceeeecc
Confidence 9999999999874 3433 367899999999999977777665 78999999999999998889999999999999999
Q ss_pred CCcceeeCCCCCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEeccccc
Q 040849 301 INGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININN 356 (809)
Q Consensus 301 ~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 356 (809)
+|+++...+.+..+++|++|++++|+++.+....+..........+|+.+++++|.
T Consensus 228 ~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp SSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 99998654458999999999999999987766554433333333444444444443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.9e-25 Score=227.67 Aligned_cols=249 Identities=20% Similarity=0.199 Sum_probs=213.1
Q ss_pred eccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEee-CCe
Q 040849 351 GININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQ-GNK 429 (809)
Q Consensus 351 ~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls-~N~ 429 (809)
+.+...++ .+|.. +++.+++|+|++|+|+...+..|.++++|++|++++|++.+..+..+..++.++.++.. .|.
T Consensus 17 ~c~~~~L~-~iP~~---ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 17 SCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp ECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EcCCCCCC-ccCCC---CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 33333333 44543 33568999999999998888889999999999999999999999999999999999875 566
Q ss_pred eecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCC
Q 040849 430 FLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPS 509 (809)
Q Consensus 430 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~ 509 (809)
++...|..|.++++|++|++++|.+....+..+...++|+.+++++|++++..+..+..++.+ +.|++++|++++..+.
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-~~L~l~~N~l~~l~~~ 171 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPER 171 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECTT
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch-hhcccccCcccccchh
Confidence 777778899999999999999999998888889999999999999999997667778888888 7999999999999999
Q ss_pred CccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCC
Q 040849 510 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFL 589 (809)
Q Consensus 510 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L 589 (809)
.|..+++|+++++++|++++..|..|.++++|++|++++|++++..|..|.++++|+.|++++|++....+.. .-...+
T Consensus 172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l 250 (284)
T d1ozna_ 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL 250 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765431 111234
Q ss_pred CeEEccCCcccccCCC
Q 040849 590 QNLNLSFNHFEGEVPI 605 (809)
Q Consensus 590 ~~l~ls~N~l~g~~p~ 605 (809)
+.+....+++.+..|.
T Consensus 251 ~~~~~~~~~~~C~~p~ 266 (284)
T d1ozna_ 251 QKFRGSSSEVPCSLPQ 266 (284)
T ss_dssp HHCCSEECCCBEEESG
T ss_pred HhCcCCCCceEeCCch
Confidence 4556666777776664
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=5.4e-24 Score=222.40 Aligned_cols=281 Identities=23% Similarity=0.279 Sum_probs=153.3
Q ss_pred CceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC-CCCCCCCcEEEec
Q 040849 245 LNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS-FGNLHKLQWVSIS 323 (809)
Q Consensus 245 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~Ls 323 (809)
++.++-++++++ .+|..+. +++++|+|++|+++...+.+|.++++|+.|++++|.+....|. |..+++|+.|+++
T Consensus 12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 344555555555 5666542 5677777777777755555677777777777777777765554 6667777777776
Q ss_pred cccCCCCCCCchhhhhcccccCCccEEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCC
Q 040849 324 MNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEG 403 (809)
Q Consensus 324 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 403 (809)
+|+++..... + ...++.|++++|.+.+..+..+.....+..++...
T Consensus 88 ~n~l~~l~~~-------------------------------~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~ 133 (305)
T d1xkua_ 88 KNQLKELPEK-------------------------------M---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 133 (305)
T ss_dssp SSCCSBCCSS-------------------------------C---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CCccCcCccc-------------------------------h---hhhhhhhhccccchhhhhhhhhhcccccccccccc
Confidence 6666532210 0 11255555666655554444455555555555555
Q ss_pred ccce--ecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccc
Q 040849 404 NQFT--GRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGT 481 (809)
Q Consensus 404 N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 481 (809)
|... ...+..+..+++|+++++++|.+.. +|..+ +++|+.|++++|.+++..+..|.+++.+++|++++|.
T Consensus 134 n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~---- 206 (305)
T d1xkua_ 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS---- 206 (305)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC----
T ss_pred ccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccc----
Confidence 5332 2233445555555566665555542 22221 3344455555555444444444444444444444444
Q ss_pred cCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhh--
Q 040849 482 IPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSF-- 559 (809)
Q Consensus 482 ~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-- 559 (809)
+++..+..+..+++|++|+|++|+|+ .+|.+|.++++|++|+|++|+|+......|
T Consensus 207 ---------------------l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~ 264 (305)
T d1xkua_ 207 ---------------------ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264 (305)
T ss_dssp ---------------------CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ---------------------ccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccC
Confidence 44444444555555555555555555 345555555555555555555554332222
Q ss_pred ----cCCCCCCEEeCCCCCcc--cccccccccCCCCCeE
Q 040849 560 ----SSLRGIENLDLSRNNLS--GRIPKYFENFLFLQNL 592 (809)
Q Consensus 560 ----~~l~~L~~LdLs~N~l~--~~~p~~~~~l~~L~~l 592 (809)
..+.+|+.|+|++|+++ ...|..|..+.....+
T Consensus 265 ~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~ 303 (305)
T d1xkua_ 265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303 (305)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred cchhcccCCCCEEECCCCcCccCcCCHhHhcccccCccc
Confidence 34566777777777764 3445555554444443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-23 Score=214.65 Aligned_cols=200 Identities=24% Similarity=0.213 Sum_probs=131.0
Q ss_pred CCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeC
Q 040849 394 VNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGL 473 (809)
Q Consensus 394 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 473 (809)
..+.+++.+++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+|+.. | .+..+++|++|+|
T Consensus 10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL 84 (266)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence 33444455555554 2343332 3455555555555554445555555555555555555532 2 2345566666666
Q ss_pred cCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCcccc
Q 040849 474 SNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQG 553 (809)
Q Consensus 474 s~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 553 (809)
++|+++ ..+..+.+++.+ +.|++++|++.+..+..+..+.+++.|++++|.++...+..+..++.|+.|++++|++++
T Consensus 85 s~N~l~-~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~ 162 (266)
T d1p9ag_ 85 SHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (266)
T ss_dssp CSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred cccccc-cccccccccccc-ccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence 666665 345555566666 566666666666666667777778888888888877767777778888888888888887
Q ss_pred ccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCcccc
Q 040849 554 NIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 554 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
..++.|..+++|++|||++|+|+ .+|..+..+++|+.|+|++|++.+
T Consensus 163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence 77777888888888888888887 667777777888888888887765
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.1e-22 Score=207.51 Aligned_cols=198 Identities=22% Similarity=0.196 Sum_probs=151.6
Q ss_pred CcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEccc
Q 040849 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDK 451 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 451 (809)
+...+.++++++. +|..+. +++++|+|++|+|++..+..|.++++|++|+|++|+|+.. | .++.+++|++|++++
T Consensus 12 ~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 12 HLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSH 86 (266)
T ss_dssp CCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCS
T ss_pred CeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccc
Confidence 4455666666663 455442 4677777777777766666777777777777777777643 2 346677788888888
Q ss_pred ccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEcccccccccc
Q 040849 452 NMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEI 531 (809)
Q Consensus 452 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 531 (809)
|++++ .+..+.++++|+.|++++|++.+..+..+..+..+ ..|++++|.++...+..+..++.|+.|++++|++++..
T Consensus 87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l-~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~ 164 (266)
T d1p9ag_ 87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (266)
T ss_dssp SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred ccccc-cccccccccccccccccccccceeecccccccccc-ccccccccccceeccccccccccchhcccccccccccC
Confidence 87764 45667778888888888888876666667777777 67888888888777778888888999999999998888
Q ss_pred CccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCccc
Q 040849 532 PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSG 577 (809)
Q Consensus 532 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 577 (809)
+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|.+.-
T Consensus 165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence 888888999999999999988 778888888899999999998763
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=7e-18 Score=179.12 Aligned_cols=85 Identities=28% Similarity=0.407 Sum_probs=52.0
Q ss_pred eEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCC
Q 040849 494 IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573 (809)
Q Consensus 494 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 573 (809)
...++..|.+.+. ...+++|++|+|++|+|+ .+|.. +++|+.|+|++|+|+ .+|.. +++|+.|++++|
T Consensus 267 ~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N 334 (353)
T d1jl5a_ 267 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN 334 (353)
T ss_dssp CEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred cccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence 3455666665533 123567778888888777 55643 467777788888777 45542 356777777777
Q ss_pred CcccccccccccCCCCCeEEc
Q 040849 574 NLSGRIPKYFENFLFLQNLNL 594 (809)
Q Consensus 574 ~l~~~~p~~~~~l~~L~~l~l 594 (809)
+++ .+|... ..|+.|.+
T Consensus 335 ~L~-~lp~~~---~~L~~L~~ 351 (353)
T d1jl5a_ 335 PLR-EFPDIP---ESVEDLRM 351 (353)
T ss_dssp CCS-SCCCCC---TTCCEEEC
T ss_pred cCC-CCCccc---cccCeeEC
Confidence 776 445422 24555544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=4.4e-18 Score=180.67 Aligned_cols=135 Identities=31% Similarity=0.316 Sum_probs=61.3
Q ss_pred EEEEECCCCCCccccCccccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEccc
Q 040849 77 VTALLLPSLLLQGSLSPHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156 (809)
Q Consensus 77 v~~l~l~~~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 156 (809)
++.|||++++++ .+|+. +++|++|+|++|+|+ .+|..+ .+|+.|++++|+++ .+++ + .+.|++|++++
T Consensus 40 l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~ 107 (353)
T d1jl5a_ 40 AHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSN 107 (353)
T ss_dssp CSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECCS
T ss_pred CCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--ccccccccccc
Confidence 445566666554 24432 345556666666655 344432 34555555555554 2221 1 12355555555
Q ss_pred CCCCCCCcccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcC
Q 040849 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKL 231 (809)
Q Consensus 157 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 231 (809)
|.+.. +|. ++.+++|++|++++|.++. .+. ....+..+.+..+... .+..+..++.++.++++.|..
T Consensus 108 n~l~~-lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~ 174 (353)
T d1jl5a_ 108 NQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSL 174 (353)
T ss_dssp SCCSS-CCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCC
T ss_pred ccccc-ccc-hhhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceecccccccc
Confidence 55542 232 3445555555555555442 111 1233444444433332 122344444444555444443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.2e-21 Score=213.17 Aligned_cols=385 Identities=15% Similarity=0.116 Sum_probs=173.8
Q ss_pred CCCEEEcccccCcccC-CccCCCCCCCCEEEcccCcccc----cCcccccCCCCccEEEeecCcCCCCcchhcc-----C
Q 040849 172 KLRTLAVHYNNLSGQI-PSSFGNLSSLEVLSASANQFVG----QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIY-----N 241 (809)
Q Consensus 172 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~ 241 (809)
+|+.||+++|++++.. .+.+..++++++|+|++|.++. .++..+..+++|+.|+|++|.++......+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 5778888888887532 3335567778888888887763 2334456677777777777766432111111 1
Q ss_pred CCCCceeccCCcccccccChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCC------CCCCC
Q 040849 242 LSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS------FGNLH 315 (809)
Q Consensus 242 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~------~~~l~ 315 (809)
..+|+.|++++|++++..-.. ++..+..+++|++|++++|.++..... .....
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~---------------------l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~ 141 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGV---------------------LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 141 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHH---------------------HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCCEEECCCCCcccccccc---------------------ccchhhccccccccccccccchhhhhhhhhhccccccc
Confidence 124555555555444221000 122333444444444444444321100 00111
Q ss_pred CCcEEEeccccCCCCCCCchhhhhcccccCCccEEecccccccccc----chhhhhccccCcEEEccCCccccc----CC
Q 040849 316 KLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGML----PEAVGNLSTRLRILRVGNNQLFGN----IP 387 (809)
Q Consensus 316 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~----p~~~~~~~~~L~~L~Ls~n~l~~~----~p 387 (809)
...........+.. .........+.....++.++++.+...... ...+.........+++..+.+... ..
T Consensus 142 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (460)
T d1z7xw1 142 RLEKLQLEYCSLSA--ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 219 (460)
T ss_dssp CCCEEECTTSCCBG--GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred ccccccccccccch--hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence 11122222111110 001111223334455666666655543221 111222223455666666655421 11
Q ss_pred ccccCCCCCCeeeCCCcccee-----cCCccccCCCCCCEEEeeCCeeeccc----CcCCcCCCCccEEEcccccCcccC
Q 040849 388 SGLRNLVNLERLLLEGNQFTG-----RIPGSIGDLHKLQRLGLQGNKFLGEI----PSSIGNLTLLITLSFDKNMLEGSI 458 (809)
Q Consensus 388 ~~l~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~ 458 (809)
..+...+.++.+++++|.+.. ..+........++.|++++|.+.... ...+...+.++.+++++|.+++..
T Consensus 220 ~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~ 299 (460)
T d1z7xw1 220 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred ccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 233455666777777665532 12223344556666777766654321 122334555666666666654321
Q ss_pred Cccc-----cCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccc---
Q 040849 459 PSSL-----GKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE--- 530 (809)
Q Consensus 459 p~~l-----~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--- 530 (809)
...+ .....|+.+++++|.++......+.. .+...++|++|||++|+++..
T Consensus 300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~---------------------~~~~~~~L~~L~Ls~N~i~~~g~~ 358 (460)
T d1z7xw1 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS---------------------VLAQNRFLLELQISNNRLEDAGVR 358 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH---------------------HHHHCSSCCEEECCSSBCHHHHHH
T ss_pred cchhhccccccccccccccccccchhhhhhhhccc---------------------ccccccchhhhheeeecccCcccc
Confidence 1111 12345666666666554322111111 112233455555555555432
Q ss_pred -cCcccc-CCCCCCEEeCcCCccccc----cchhhcCCCCCCEEeCCCCCcccccccccc-----cCCCCCeEEccCCcc
Q 040849 531 -IPNSLG-SCVRLEQLGMNGNFFQGN----IPSSFSSLRGIENLDLSRNNLSGRIPKYFE-----NFLFLQNLNLSFNHF 599 (809)
Q Consensus 531 -~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~-----~l~~L~~l~ls~N~l 599 (809)
++..+. ..+.|++|+|++|.|++. +++.+..+++|++|||++|+++......|. +...|+.|++++|.+
T Consensus 359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~ 438 (460)
T d1z7xw1 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438 (460)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence 122221 234455555555555432 333444455555555555555433222221 223455555555555
Q ss_pred c
Q 040849 600 E 600 (809)
Q Consensus 600 ~ 600 (809)
.
T Consensus 439 ~ 439 (460)
T d1z7xw1 439 S 439 (460)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=4.4e-19 Score=177.92 Aligned_cols=220 Identities=18% Similarity=0.154 Sum_probs=151.3
Q ss_pred CcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeeccc-CcCCcCCCCccEEEcc
Q 040849 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEI-PSSIGNLTLLITLSFD 450 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~ 450 (809)
.+.++.++..++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+...+ +..|.+++.++++.+.
T Consensus 10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 355666666666 4554442 46778888888877666667778888888888888776544 3456777777877765
Q ss_pred -cccCcccCCccccCCCCCcEEeCcCCcCccccCcc-hhcccCCceEEEccCCcCcccCCCCccCCC-CCCEEEcccccc
Q 040849 451 -KNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTE-VIGLSSLSIYLDLSQNQLNGTLPSNFGILK-NLGVLDVSENKL 527 (809)
Q Consensus 451 -~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l 527 (809)
.|.+....+..|.++++|+.+++++|++....+.. +..+..+ ..+..+++++....+..|..++ .++.|++++|++
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l-~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l 165 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 165 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCE-EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccccc-ccccccccccccccccccccccccceeeecccccc
Confidence 36677677777788888888888888776432322 2233444 4566677777766666666654 788888888888
Q ss_pred ccccCccccCCCCCC-EEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccC
Q 040849 528 SGEIPNSLGSCVRLE-QLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSF 596 (809)
Q Consensus 528 ~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~ 596 (809)
+...+..+ ..++++ .+++++|+++...+..|.++++|++|||++|+++...+..|.+++.|+.+++.+
T Consensus 166 ~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 166 QEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp CEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred cccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 85544444 445544 446788888866666788889999999999998876666777777777766543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=7.6e-19 Score=174.13 Aligned_cols=203 Identities=24% Similarity=0.309 Sum_probs=145.5
Q ss_pred EEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccC
Q 040849 375 LRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNML 454 (809)
Q Consensus 375 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 454 (809)
++++.+++++.. .+..+.+|+.|++++|.++. ++ .+..+++|++|++++|++++..| +..+++|+++++++|.+
T Consensus 24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (227)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence 455555555432 34556677777777777764 33 46777777777777777765443 67777777777777777
Q ss_pred cccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCcc
Q 040849 455 EGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNS 534 (809)
Q Consensus 455 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 534 (809)
+.. ..+.++++|+.++++++...+.. .+...+.+ ..+.++++.+.... .+...++|+.|++++|.+++.. .
T Consensus 98 ~~i--~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~-~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~ 168 (227)
T d1h6ua2 98 KNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNL-QVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--P 168 (227)
T ss_dssp SCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTC-CEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--G
T ss_pred ccc--ccccccccccccccccccccccc--hhccccch-hhhhchhhhhchhh--hhccccccccccccccccccch--h
Confidence 632 35677788888888888776432 23444555 57788888776443 3667788899999999887433 3
Q ss_pred ccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccC
Q 040849 535 LGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSF 596 (809)
Q Consensus 535 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~ 596 (809)
++++++|+.|+|++|++++. | .++++++|+.|+|++|++++..| +.++++|+.|++++
T Consensus 169 l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 169 LANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226 (227)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred hcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence 78889999999999998864 3 38889999999999999986543 78899999999874
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.6e-21 Score=213.94 Aligned_cols=258 Identities=19% Similarity=0.186 Sum_probs=129.9
Q ss_pred CccEEeCCCCCCCccC-CccccccccCCccccCCCcCcc----cCCccccCCCcCcEEEcccCCCCCC----Cccccc-C
Q 040849 100 FLRVLDLKNNSFRNEI-PQEIGYLFRLQFLWLDNNTFGG----QIPDNISHCVNLESLRLGFNELVGK----VPRKLG-S 169 (809)
Q Consensus 100 ~L~~LdLs~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~ 169 (809)
+|++||+++|++++.. ..-+..++++++|+|++|.++. .++..+..+++|++|||++|.++.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 4667777777776532 3335566777777777776652 2334456677777777777776421 122222 2
Q ss_pred CCCCCEEEcccccCccc----CCccCCCCCCCCEEEcccCcccccCcccc----c-CCCCccEEEeecCcCCCCc----c
Q 040849 170 LSKLRTLAVHYNNLSGQ----IPSSFGNLSSLEVLSASANQFVGQIPKTL----S-QLKRMRFIGFGVNKLSGEI----P 236 (809)
Q Consensus 170 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~L~~n~l~~~~----~ 236 (809)
..+|++|+|++|++++. ++..+..+++|++|++++|.++......+ . ..............+.... .
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 34677777777777643 34456677777788877777754322211 1 1122233333333222111 1
Q ss_pred hhccCCCCCceeccCCcccccc----cChhhhcCCCCCcEEEccCcccccc----CCcccccCCCCceEecCCCcceee-
Q 040849 237 FSIYNLSSLNYFEFPVNQLQGS----LPSDLGFTLPNLERLNLGENQFTGP----IPASISNASHLMRLTIPINGFSGK- 307 (809)
Q Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~- 307 (809)
..+.....++.++++.+..... ....+.........+++..+.+... ....+...+.++.+++..|.+...
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 1233345566666665554321 1111111233455666666654421 112234456666777776655321
Q ss_pred ----CCC-CCCCCCCcEEEeccccCCCCCCCchhhhhcccccCCccEEecccccccc
Q 040849 308 ----VPS-FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGG 359 (809)
Q Consensus 308 ----~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 359 (809)
.+. ......++.++++.|.+..... ......+...+.++.++++.|.+.+
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~--~~~~~~l~~~~~l~~l~l~~n~i~~ 297 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRAKESLKELSLAGNELGD 297 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred cchhhccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 111 3345566666666665543111 0112223344555556665555543
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2e-18 Score=173.06 Aligned_cols=219 Identities=16% Similarity=0.112 Sum_probs=167.4
Q ss_pred EEeccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecC-CccccCCCCCCEEEeeC
Q 040849 349 LLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRI-PGSIGDLHKLQRLGLQG 427 (809)
Q Consensus 349 ~L~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~ 427 (809)
.++.+...++ .+|..+ +.++++|++++|+++...+..|.++++|++|++++|.+...+ +..|.+++.++++++..
T Consensus 12 ~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 12 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp EEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred EEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 4444444444 455433 346999999999998777778999999999999999987654 45788999999999875
Q ss_pred -CeeecccCcCCcCCCCccEEEcccccCcccCCc-cccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcc
Q 040849 428 -NKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPS-SLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNG 505 (809)
Q Consensus 428 -N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~ 505 (809)
|++....+..|.++++|+++++++|.+....+. .+..++.+..+..+++++....+..+.+++...+.|++++|+++.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~ 167 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 167 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 678888888899999999999999999754332 344566777777888888866666777766444789999999997
Q ss_pred cCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCC
Q 040849 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLS 571 (809)
Q Consensus 506 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 571 (809)
..+..+.....++.+++++|+++...+..|.++++|++|+|++|+|+...+..|.++++|+.+++.
T Consensus 168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233 (242)
T ss_dssp ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence 666555443334445678889986666679999999999999999997767778888777776654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.75 E-value=1.9e-18 Score=166.15 Aligned_cols=121 Identities=26% Similarity=0.309 Sum_probs=77.4
Q ss_pred CCCccccCccccCCCCccEEeCCCCCCCcc-CCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCC
Q 040849 85 LLLQGSLSPHIGNLSFLRVLDLKNNSFRNE-IPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKV 163 (809)
Q Consensus 85 ~~l~g~~~~~l~~l~~L~~LdLs~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 163 (809)
++++ .+|+.+. +++++|+|++|.|++. .+..|+++++|++|+|++|.+.+..+..|..+++|++|+|++|+++...
T Consensus 18 ~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~ 94 (192)
T d1w8aa_ 18 RGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94 (192)
T ss_dssp SCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC
T ss_pred CCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccC
Confidence 3344 3455443 4677777777777653 3455666777777777777776666666666666666666666666666
Q ss_pred cccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCccc
Q 040849 164 PRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208 (809)
Q Consensus 164 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 208 (809)
|..|.++++|++|+|++|+|++..++.|..+++|++|+|++|.+.
T Consensus 95 ~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred HHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 666666666666666666666655666666666666666666554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=8.2e-18 Score=166.54 Aligned_cols=207 Identities=19% Similarity=0.286 Sum_probs=135.4
Q ss_pred CCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEc
Q 040849 99 SFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAV 178 (809)
Q Consensus 99 ~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 178 (809)
..+..++++.+.+++.+ .++++.+|++|++.+|+++. ++ .+.++++|++|++++|.+++..| +..+++|+++++
T Consensus 19 ~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~ 92 (227)
T d1h6ua2 19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92 (227)
T ss_dssp HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred HHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence 33445566666666543 45667777777777777764 33 47777777777777777765433 677777777777
Q ss_pred ccccCcccCCccCCCCCCCCEEEcccCcccccCcccccCCCCccEEEeecCcCCCCcchhccCCCCCceeccCCcccccc
Q 040849 179 HYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGS 258 (809)
Q Consensus 179 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 258 (809)
++|.++. + ..+..+++|+.++++++...+. ..+...+.++.+.++.+.+.... .+.++++|+.|+++.|.+.+.
T Consensus 93 ~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~ 166 (227)
T d1h6ua2 93 SGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL 166 (227)
T ss_dssp CSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred ccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc
Confidence 7777763 2 2466777777777777776543 23556667777777777665433 355666777777777766532
Q ss_pred cChhhhcCCCCCcEEEccCccccccCCcccccCCCCceEecCCCcceeeCCCCCCCCCCcEEEec
Q 040849 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSIS 323 (809)
Q Consensus 259 ~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls 323 (809)
.+ +. .+++|+.|++++|++++. + .++.+++|++|++++|++++ ++.+.++++|+.|+++
T Consensus 167 ~~--l~-~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 167 TP--LA-NLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT 225 (227)
T ss_dssp GG--GT-TCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEE
T ss_pred hh--hc-ccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC-CcccccCCCCCEEEee
Confidence 22 32 577777777777777643 2 26677777777777777764 3346677777777765
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.73 E-value=2.7e-18 Score=165.04 Aligned_cols=89 Identities=27% Similarity=0.400 Sum_probs=42.4
Q ss_pred cccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCE
Q 040849 488 GLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIEN 567 (809)
Q Consensus 488 ~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 567 (809)
++++| +.|+|++|++.+..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|++|..+++|++
T Consensus 52 ~l~~L-~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 130 (192)
T d1w8aa_ 52 RLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred CCceE-eeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc
Confidence 33333 34444444444444444444444444444444444444444444555555555555555444444555555555
Q ss_pred EeCCCCCccc
Q 040849 568 LDLSRNNLSG 577 (809)
Q Consensus 568 LdLs~N~l~~ 577 (809)
|+|++|.+..
T Consensus 131 l~L~~N~~~~ 140 (192)
T d1w8aa_ 131 LNLASNPFNC 140 (192)
T ss_dssp EECTTCCBCC
T ss_pred cccccccccc
Confidence 5555555443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=1.9e-17 Score=161.36 Aligned_cols=180 Identities=23% Similarity=0.331 Sum_probs=105.9
Q ss_pred EccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccCc
Q 040849 376 RVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLE 455 (809)
Q Consensus 376 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 455 (809)
+++.+.+.+.++. ..+.+|++|++++|.++.. + .+..+++|++|++++|++++.. .++.+++|++|++++|+++
T Consensus 30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence 4555665554432 3456777777777777643 2 3566777777777777776533 2456666666676666665
Q ss_pred ccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccc
Q 040849 456 GSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSL 535 (809)
Q Consensus 456 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 535 (809)
+. | .+.++++|+.|++++|.+.. + . .+..++.++.+++++|.+++ +..+
T Consensus 104 ~l-~-~l~~l~~L~~L~l~~~~~~~-~-~-------------------------~l~~l~~l~~l~~~~n~l~~--~~~~ 152 (210)
T d1h6ta2 104 DL-S-SLKDLKKLKSLSLEHNGISD-I-N-------------------------GLVHLPQLESLYLGNNKITD--ITVL 152 (210)
T ss_dssp CG-G-GGTTCTTCCEEECTTSCCCC-C-G-------------------------GGGGCTTCCEEECCSSCCCC--CGGG
T ss_pred cc-c-cccccccccccccccccccc-c-c-------------------------cccccccccccccccccccc--cccc
Confidence 32 2 35566666666666665541 1 1 23444555555565555542 2334
Q ss_pred cCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccC
Q 040849 536 GSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSF 596 (809)
Q Consensus 536 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~ 596 (809)
..+++|+.+++++|++++..+ +.++++|+.|||++|+++. +| .|.++++|++|++++
T Consensus 153 ~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred ccccccccccccccccccccc--ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 556666666666666664322 5666666666666666663 33 466666677776653
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=2.3e-17 Score=160.79 Aligned_cols=179 Identities=23% Similarity=0.354 Sum_probs=124.5
Q ss_pred eccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCee
Q 040849 351 GININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430 (809)
Q Consensus 351 ~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 430 (809)
.+..+.+.+.++.. .+ .+|+.|++++|.+.... .+..+++|++|++++|++++.. .++.+++|++|++++|++
T Consensus 30 ~l~~~~~~~~~~~~--~L-~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i 102 (210)
T d1h6ta2 30 NLKKKSVTDAVTQN--EL-NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV 102 (210)
T ss_dssp HTTCSCTTSEECHH--HH-HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred HhCcCccCCccCHH--Hh-cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence 45556666655542 22 25999999999998643 4889999999999999999644 368899999999999999
Q ss_pred ecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCC
Q 040849 431 LGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN 510 (809)
Q Consensus 431 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~ 510 (809)
++. | .+.++++|+.|++++|.+.. ...+.+++.++.+++++|.+++ +..+..+++
T Consensus 103 ~~l-~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~------------------- 157 (210)
T d1h6ta2 103 KDL-S-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTK------------------- 157 (210)
T ss_dssp CCG-G-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTT-------------------
T ss_pred ccc-c-cccccccccccccccccccc--cccccccccccccccccccccc--ccccccccc-------------------
Confidence 854 3 58889999999999999864 3468889999999999998873 223334444
Q ss_pred ccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCC
Q 040849 511 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLS 571 (809)
Q Consensus 511 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 571 (809)
|+.+++++|++++.. .+.++++|+.|+|++|++++ +| .+.++++|++|+|+
T Consensus 158 ------L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 158 ------LDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp ------CSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred ------ccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 444555555544321 14455555555555555553 23 35555555555554
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=2.4e-18 Score=176.24 Aligned_cols=104 Identities=27% Similarity=0.513 Sum_probs=90.1
Q ss_pred HHHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeecccc
Q 040849 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 697 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
++|+...++|+..+.||+|+||+||+|++...+ +.|||| ++++|||||+++|+|..
T Consensus 10 ~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~--~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~--- 84 (287)
T d1opja_ 10 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYS--LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR--- 84 (287)
T ss_dssp CTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGT--EEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECS---
T ss_pred cccEecHHHeEEeeEEeeCCCeEEEEEEECCCC--eEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEee---
Confidence 445555678999999999999999999976543 489999 57899999999999865
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|||||||++|+|.++++... ...++|..+..|+.|||+||+|||
T Consensus 85 --~~~~~iv~E~~~~g~l~~~l~~~~--~~~~~~~~~~~i~~qi~~gL~yLH 132 (287)
T d1opja_ 85 --EPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE 132 (287)
T ss_dssp --SSSCEEEEECCTTCBHHHHHHHSC--TTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCeeEEEeecccCcchHHHhhhcc--ccchHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999997542 356899999999999999999998
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=4.6e-17 Score=157.27 Aligned_cols=177 Identities=24% Similarity=0.359 Sum_probs=105.4
Q ss_pred EEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcccccC
Q 040849 375 LRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNML 454 (809)
Q Consensus 375 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 454 (809)
..++.+.+++.++ ...+.++++|++++|.++. + ..+..+++|++|++++|++++..| ++++++|++|++++|.+
T Consensus 23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 96 (199)
T ss_dssp HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence 3456666665432 2456677777777777763 2 235666777777777776665432 56666666666666665
Q ss_pred cccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCcc
Q 040849 455 EGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNS 534 (809)
Q Consensus 455 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 534 (809)
... + .+.+++.|+.|++++|.+.. . ..+..+++|+.|++++|++.. + +.
T Consensus 97 ~~~-~-~l~~l~~L~~L~l~~~~~~~-------------------------~--~~~~~l~~L~~L~l~~n~l~~-~-~~ 145 (199)
T d2omxa2 97 ADI-T-PLANLTNLTGLTLFNNQITD-------------------------I--DPLKNLTNLNRLELSSNTISD-I-SA 145 (199)
T ss_dssp CCC-G-GGTTCTTCSEEECCSSCCCC-------------------------C--GGGTTCTTCSEEECCSSCCCC-C-GG
T ss_pred ccc-c-cccccccccccccccccccc-------------------------c--cccchhhhhHHhhhhhhhhcc-c-cc
Confidence 432 2 35555566666655555542 1 124455666666666666652 2 24
Q ss_pred ccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeE
Q 040849 535 LGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNL 592 (809)
Q Consensus 535 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l 592 (809)
+..+++|++|++++|++++.. .++++++|+.||+++|+++.. | .+..+++|++|
T Consensus 146 l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 146 LSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL 199 (199)
T ss_dssp GTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred ccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence 666677777777777776542 366777777777777777642 2 36666666654
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.3e-18 Score=172.35 Aligned_cols=102 Identities=21% Similarity=0.300 Sum_probs=85.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|+..+.||+|+||+||+|+.+..+. .|||| ++++|||||++++++.+ +.+
T Consensus 3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~--~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~---~~~ 77 (269)
T d2java1 3 AEDYEVLYTIGTGSYGRCQKIRRKSDGK--ILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID---RTN 77 (269)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC------
T ss_pred chhCEEeEEEecCCCeEEEEEEECCCCC--EEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEe---CCC
Confidence 3689999999999999999999765544 89999 57899999999999764 124
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.+|||||||++|+|.+++.+.......+++.+++.|+.|++.||+|||
T Consensus 78 ~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH 126 (269)
T d2java1 78 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH 126 (269)
T ss_dssp -CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999753223456999999999999999999998
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=1e-17 Score=172.53 Aligned_cols=98 Identities=29% Similarity=0.499 Sum_probs=83.7
Q ss_pred ccccccceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+++..+ ....|||| ++++|||||+++|+|.. ++
T Consensus 26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~-----~~ 100 (299)
T d1jpaa_ 26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTK-----ST 100 (299)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----SS
T ss_pred hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----CC
Confidence 45677889999999999999976432 33468998 57899999999999865 67
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||++|+|.++++... ..++|.++..|+.|||+||+|||
T Consensus 101 ~~~iv~Ey~~~g~L~~~~~~~~---~~l~~~~~~~i~~qia~gl~yLH 145 (299)
T d1jpaa_ 101 PVMIITEFMENGSLDSFLRQND---GQFTVIQLVGMLRGIAAGMKYLA 145 (299)
T ss_dssp SCEEEEECCTTEEHHHHHHTTT---TCSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcceeeecccc---CCCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988542 45899999999999999999998
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.3e-17 Score=168.81 Aligned_cols=95 Identities=22% Similarity=0.384 Sum_probs=85.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
++|+..+.||+|+||+||+|+.+..+. .|||| ++++|||||++++++.. ++.
T Consensus 5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~--~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~-----~~~ 77 (271)
T d1nvra_ 5 EDWDLVQTLGEGAYGEVQLAVNRVTEE--AVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-----GNI 77 (271)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEE-----TTE
T ss_pred cceEEEEEEecCcCeEEEEEEECCCCC--EEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeecc-----Cce
Confidence 579999999999999999999765444 89999 57899999999999776 788
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|||||||++|+|.++++.+ ..+++.++..|+.|+++||+|||
T Consensus 78 ~~ivmEy~~gg~L~~~l~~~----~~l~e~~~~~i~~qi~~al~ylH 120 (271)
T d1nvra_ 78 QYLFLEYCSGGELFDRIEPD----IGMPEPDAQRFFHQLMAGVVYLH 120 (271)
T ss_dssp EEEEEECCTTEEGGGGSBTT----TBCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccCCCcHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999743 45999999999999999999998
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.6e-17 Score=169.61 Aligned_cols=98 Identities=24% Similarity=0.466 Sum_probs=81.7
Q ss_pred cccccccce-eccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENL-IGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~-ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.++|...+. ||+|+||+||+|.++..+.+..|||| ++++|||||+++|+|..
T Consensus 7 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~------ 80 (285)
T d1u59a_ 7 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------ 80 (285)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES------
T ss_pred ccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc------
Confidence 356666674 99999999999988765555689999 47899999999999753
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.++++..+ ..++|.++.+|+.|||+||+|||
T Consensus 81 ~~~~lvmE~~~~g~L~~~l~~~~---~~l~~~~~~~i~~qi~~gL~ylH 126 (285)
T d1u59a_ 81 EALMLVMEMAGGGPLHKFLVGKR---EEIPVSNVAELLHQVSMGMKYLE 126 (285)
T ss_dssp SSEEEEEECCTTEEHHHHHTTCT---TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCcHHHHhhccc---cCCCHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999987542 46899999999999999999998
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=9.4e-17 Score=155.06 Aligned_cols=162 Identities=28% Similarity=0.364 Sum_probs=114.1
Q ss_pred eccccccccccchhhhhccccCcEEEccCCcccccCCccccCCCCCCeeeCCCccceecCCccccCCCCCCEEEeeCCee
Q 040849 351 GININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGRIPGSIGDLHKLQRLGLQGNKF 430 (809)
Q Consensus 351 ~l~~n~~~~~~p~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 430 (809)
.++.+.+++.++. ..+ .+++.|++++|.+... +.+..+++|++|++++|++++..| +.++++|++|++++|.+
T Consensus 24 ~l~~~~~~~~~~~--~~l-~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 24 VLGKTNVTDTVSQ--TDL-DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 96 (199)
T ss_dssp HTTCSSTTSEECH--HHH-TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HhCCCCCCCccCH--HHh-cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence 4555666655443 233 3599999999999853 458899999999999999986543 89999999999999998
Q ss_pred ecccCcCCcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCC
Q 040849 431 LGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSN 510 (809)
Q Consensus 431 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~ 510 (809)
.... .+.+++.|+.|++++|.+... ..+..+++|+.|++++|++.. ++ .+..++++ +.|++++|++++.. .
T Consensus 97 ~~~~--~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L-~~L~l~~n~l~~l~--~ 167 (199)
T d2omxa2 97 ADIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSL-QQLNFSSNQVTDLK--P 167 (199)
T ss_dssp CCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTC-SEEECCSSCCCCCG--G
T ss_pred cccc--ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccc-cccccccccccCCc--c
Confidence 7543 488999999999999998754 357888999999999998863 22 34444444 44555555554321 1
Q ss_pred ccCCCCCCEEEccccccc
Q 040849 511 FGILKNLGVLDVSENKLS 528 (809)
Q Consensus 511 ~~~l~~L~~L~Ls~N~l~ 528 (809)
++++++|++|++++|+++
T Consensus 168 l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 168 LANLTTLERLDISSNKVS 185 (199)
T ss_dssp GTTCTTCCEEECCSSCCC
T ss_pred ccCCCCCCEEECCCCCCC
Confidence 334444444444444443
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.8e-17 Score=167.61 Aligned_cols=95 Identities=28% Similarity=0.476 Sum_probs=84.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
++|+..+.||+|+||+||+|++.++ . .|||| ++++|||||+++|+|.. ++..+
T Consensus 5 ~~~~~~~~iG~G~fg~Vy~~~~~~~-~--~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-----~~~~~ 76 (263)
T d1sm2a_ 5 SELTFVQEIGSGQFGLVHLGYWLNK-D--KVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-----QAPIC 76 (263)
T ss_dssp SCEEEEEEEECCSSCCEEEEEETTT-E--EEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSCE
T ss_pred HHcEEEEEEeeCCCeEEEEEEECCC-C--EEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceecc-----CCceE
Confidence 5788999999999999999998654 3 79999 57899999999999875 67799
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||||++|+|.++++..+ ..++|.++..|+.|||+||+|||
T Consensus 77 lv~E~~~~g~L~~~l~~~~---~~~~~~~~~~i~~qia~gl~~lH 118 (263)
T d1sm2a_ 77 LVFEFMEHGCLSDYLRTQR---GLFAAETLLGMCLDVCEGMAYLE 118 (263)
T ss_dssp EEEECCTTCBHHHHHHTTT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHhhccc---cCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999987542 45899999999999999999998
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.4e-18 Score=171.33 Aligned_cols=97 Identities=32% Similarity=0.447 Sum_probs=83.8
Q ss_pred HHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~ 756 (809)
|+...++|+..+.||+|+||+||+|+++. .|||| ++++|||||+++|++.
T Consensus 3 wei~~~~~~~~~~lG~G~fg~Vy~~~~~~-----~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~--- 74 (276)
T d1uwha_ 3 WEIPDGQITVGQRIGSGSFGTVYKGKWHG-----DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST--- 74 (276)
T ss_dssp CBCCTTCCCCCSEEEECSSCEEEEEESSS-----EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC---
T ss_pred cccccccEEEEEEEeeCCCcEEEEEEECC-----EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe---
Confidence 34456789999999999999999998532 59999 6789999999999875
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..+||||||++|+|.++++..+ ..++|.++..|+.|||+||+|||
T Consensus 75 ---~~~~~lv~Ey~~~g~L~~~l~~~~---~~~~~~~~~~i~~qi~~gl~yLH 121 (276)
T d1uwha_ 75 ---APQLAIVTQWCEGSSLYHHLHIIE---TKFEMIKLIDIARQTAQGMDYLH 121 (276)
T ss_dssp ---SSSCEEEEECCCEEEHHHHHHTSC---CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccEEEEEEecCCCCCHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHh
Confidence 346899999999999999997543 45899999999999999999998
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.3e-17 Score=166.21 Aligned_cols=95 Identities=22% Similarity=0.395 Sum_probs=85.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+.+..+. .|||| +.++|||||++++++.. +
T Consensus 6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~--~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~ 78 (263)
T d2j4za1 6 EDFEIGRPLGKGKFGNVYLAREKQSKF--ILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD-----A 78 (263)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----S
T ss_pred hHeEEEEEEecCCCcEEEEEEECCCCc--EEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEE-----C
Confidence 579999999999999999999765544 89999 57899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.+++++. ..+++.++..|+.||++||+|||
T Consensus 79 ~~~~ivmEy~~~g~L~~~l~~~----~~l~e~~~~~i~~qi~~al~~lH 123 (263)
T d2j4za1 79 TRVYLILEYAPLGTVYRELQKL----SKFDEQRTATYITELANALSYCH 123 (263)
T ss_dssp SEEEEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeecCCCcHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999743 35899999999999999999998
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=7.7e-18 Score=171.15 Aligned_cols=101 Identities=26% Similarity=0.468 Sum_probs=85.6
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccC
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQ 758 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~ 758 (809)
+|+...++|+..+.||+|+||+||+|+++++ . .|||| ++++|||||+++|+|.
T Consensus 7 ~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~-~--~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~----- 78 (272)
T d1qpca_ 7 EWEVPRETLKLVERLGAGQFGEVWMGYYNGH-T--KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT----- 78 (272)
T ss_dssp TTBCCGGGEEEEEEEEEETTEEEEEEEETTT-E--EEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred CeecCHHHeEEeEEEecCCCcEEEEEEECCC-C--EEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeec-----
Confidence 3444557899999999999999999997643 3 79999 5789999999999875
Q ss_pred CCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 759 GNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 759 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.++++... ...++|.++++|+.|||+||+|||
T Consensus 79 -~~~~~iv~Ey~~~g~L~~~~~~~~--~~~l~~~~~~~i~~qi~~gl~~lH 126 (272)
T d1qpca_ 79 -QEPIYIITEYMENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIE 126 (272)
T ss_dssp -SSSCEEEEECCTTCBHHHHTTSHH--HHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCeEEEEEeCCCCcHHHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999887542 235899999999999999999998
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.7e-17 Score=165.34 Aligned_cols=95 Identities=27% Similarity=0.450 Sum_probs=84.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
++|+..++||+|+||+||+|+++++ . .|||| ++++|||||+++|+|.. ++..+
T Consensus 4 ~~~~~~~~iG~G~fg~Vy~~~~~~~-~--~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~-----~~~~~ 75 (258)
T d1k2pa_ 4 KDLTFLKELGTGQFGVVKYGKWRGQ-Y--DVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-----QRPIF 75 (258)
T ss_dssp CCCCCCCCCCEETTEEEEEEEETTT-E--EEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECC-----SSSEE
T ss_pred HHCEEeEEEecCCCeEEEEEEECCC-C--EEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEee-----CCceE
Confidence 5799999999999999999998643 3 79999 67899999999999865 67899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||||++|+|.+++... ...++|..+.+|+.|+|+||+|||
T Consensus 76 iv~Ey~~~g~l~~~~~~~---~~~~~~~~~~~i~~qi~~gl~~LH 117 (258)
T d1k2pa_ 76 IITEYMANGCLLNYLREM---RHRFQTQQLLEMCKDVCEAMEYLE 117 (258)
T ss_dssp EEEECCTTEEHHHHHHSG---GGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCCcHHHhhhcc---ccCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998754 245899999999999999999998
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.5e-17 Score=166.49 Aligned_cols=90 Identities=27% Similarity=0.463 Sum_probs=80.0
Q ss_pred ceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceEEEEE
Q 040849 710 NLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFKALVY 767 (809)
Q Consensus 710 ~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 767 (809)
++||+|+||+||+|.++....++.|||| ++++|||||+++|+|.. +..+|||
T Consensus 13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~------~~~~lvm 86 (277)
T d1xbba_ 13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA------ESWMLVM 86 (277)
T ss_dssp EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES------SSEEEEE
T ss_pred CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc------CCEEEEE
Confidence 5799999999999998766667789999 57899999999999853 4578999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||++|+|.+++++. ..++|.++..|+.|||+||+|||
T Consensus 87 E~~~~g~L~~~l~~~----~~l~~~~~~~i~~qi~~gl~ylH 124 (277)
T d1xbba_ 87 EMAELGPLNKYLQQN----RHVKDKNIIELVHQVSMGMKYLE 124 (277)
T ss_dssp ECCTTEEHHHHHHHC----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCcHHHHHhhc----cCCCHHHHHHHHHHHHHHHhhHH
Confidence 999999999999754 45899999999999999999998
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.1e-17 Score=166.19 Aligned_cols=94 Identities=24% Similarity=0.362 Sum_probs=83.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
+.|+..+.||+|+||+||+|+....+ +.|||| +.++|||||++++++.. ++..
T Consensus 20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~--~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~~ 92 (293)
T d1yhwa1 20 KKYTRFEKIGQGASGTVYTAMDVATG--QEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDEL 92 (293)
T ss_dssp TTBCSCEECCCSSSCEEEEEEBTTTC--CEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred cccEEEEEEecCcCcEEEEEEECCCC--CEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEE-----CCEE
Confidence 46999999999999999999965543 489999 57899999999999776 7789
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||||++|+|.++++++ .+++.++..|+.||+.||+|||
T Consensus 93 ~ivmEy~~gg~L~~~~~~~-----~l~~~~~~~i~~qi~~aL~yLH 133 (293)
T d1yhwa1 93 WVVMEYLAGGSLTDVVTET-----CMDEGQIAAVCRECLQALEFLH 133 (293)
T ss_dssp EEEEECCTTCBHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988643 4899999999999999999998
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3e-17 Score=167.72 Aligned_cols=97 Identities=27% Similarity=0.381 Sum_probs=85.3
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.+.|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ++.
T Consensus 11 ~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~--~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~~~ 83 (288)
T d2jfla1 11 EDFWEIIGELGDGAFGKVYKAQNKETSV--LAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-----ENN 83 (288)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred ccCeEEeEEEeeCCCcEEEEEEECCCCe--EEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-----CCe
Confidence 3568999999999999999999765544 89999 57899999999999876 788
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|+|||||++|+|.+++.+. ...+++.++..|+.||++||+|||
T Consensus 84 ~~lvmEy~~~g~L~~~~~~~---~~~l~e~~~~~i~~qi~~gL~ylH 127 (288)
T d2jfla1 84 LWILIEFCAGGAVDAVMLEL---ERPLTESQIQVVCKQTLDALNYLH 127 (288)
T ss_dssp EEEEEECCTTEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998643 245999999999999999999998
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.5e-17 Score=168.10 Aligned_cols=97 Identities=23% Similarity=0.354 Sum_probs=86.1
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
.++|++.+.||+|+||+||+|.....+ +.|||| +.++|||||++++++.. ++..
T Consensus 4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~--~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~~~ 76 (321)
T d1tkia_ 4 YEKYMIAEDLGRGEFGIVHRCVETSSK--KTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES-----MEEL 76 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-----TTEE
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCC--cEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----CCEE
Confidence 367999999999999999999976544 489999 57899999999999765 7889
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||||++|+|.++++.++ ..+++.++..|+.||++||+|||
T Consensus 77 ~lvmE~~~gg~L~~~i~~~~---~~l~e~~~~~i~~qi~~al~yLH 119 (321)
T d1tkia_ 77 VMIFEFISGLDIFERINTSA---FELNEREIVSYVHQVCEALQFLH 119 (321)
T ss_dssp EEEECCCCCCBHHHHHTSSS---CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997542 45899999999999999999998
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7.1e-17 Score=167.32 Aligned_cols=101 Identities=27% Similarity=0.521 Sum_probs=87.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCC-CCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSI-RHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..++||+|+||+||+|++++.+....|||| +++ +|||||+++|+|.. ++
T Consensus 10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-----~~ 84 (309)
T d1fvra_ 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-----RG 84 (309)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE-----TT
T ss_pred HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEec-----CC
Confidence 5788899999999999999998776555568888 456 79999999999876 78
Q ss_pred eEEEEEeccCCCChhhhhcCCC------------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKP------------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~------------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||++|+|.++|+.+. .....++|.++..++.|||+||+|||
T Consensus 85 ~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH 144 (309)
T d1fvra_ 85 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 144 (309)
T ss_dssp EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999998642 23456999999999999999999998
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=6.6e-17 Score=166.81 Aligned_cols=96 Identities=24% Similarity=0.371 Sum_probs=85.4
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.+.|+..+.||+|+||+||+|+....+. .|||| +.++|||||++++++.. ++
T Consensus 8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~--~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-----~~ 80 (307)
T d1a06a_ 8 RDIYDFRDVLGTGAFSEVILAEDKRTQK--LVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYES-----GG 80 (307)
T ss_dssp GGTEEEEEESBSGGGGGEEEEEETTTCC--EEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEEC-----SS
T ss_pred ccceEEEEEEeeccCeEEEEEEECCCCC--EEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CC
Confidence 3569999999999999999999765444 89999 57899999999999765 78
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|||||||++|+|.+++..+ ..+++.++..|+.||+.||+|||
T Consensus 81 ~~~lvmE~~~gg~L~~~l~~~----~~l~e~~~~~~~~qi~~al~ylH 124 (307)
T d1a06a_ 81 HLYLIMQLVSGGELFDRIVEK----GFYTERDASRLIFQVLDAVKYLH 124 (307)
T ss_dssp EEEEEECCCCSCBHHHHHHTC----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeccCCCcHHHhhhcc----cCCCHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999999754 45999999999999999999998
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.3e-17 Score=166.99 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=84.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeecccc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
+.|+..+.||+|+||+||+|+.+..+. .|||| ++++|||||++++++..
T Consensus 10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~--~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~--- 84 (293)
T d1jksa_ 10 DYYDTGEELGSGQFAVVKKCREKSTGL--QYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN--- 84 (293)
T ss_dssp GTEEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---
T ss_pred cCEEEeEEEecCCCeEEEEEEECCCCC--EEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE---
Confidence 568999999999999999999765444 89999 35799999999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|||||||++|+|.++++.+ ..+++.++..|+.|+++||+|||
T Consensus 85 --~~~~~iv~E~~~gg~L~~~i~~~----~~l~~~~~~~~~~qi~~al~yLH 130 (293)
T d1jksa_ 85 --KTDVILILELVAGGELFDFLAEK----ESLTEEEATEFLKQILNGVYYLH 130 (293)
T ss_dssp --SSEEEEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEEcCCCccccchhccc----cccchhHHHHHHHHHHHHHHhhh
Confidence 78899999999999999999753 35999999999999999999998
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.9e-17 Score=168.89 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=86.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.++|+..+.||+|+||+||+|+....+ +.|||| +.++|||||++++++.. ++
T Consensus 5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~--~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-----~~ 77 (322)
T d1s9ja_ 5 DDDFEKISELGAGNGGVVFKVSHKPSG--LVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DG 77 (322)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEETTTT--EEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEEC-----SS
T ss_pred ccCCEEEEEEecCCCeEEEEEEECCCC--cEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CC
Confidence 568999999999999999999976543 499999 57899999999999875 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|||||||++|+|.++++++ ..+++.++..++.|+++||+|||
T Consensus 78 ~~~iVmEy~~gg~L~~~l~~~----~~l~~~~~~~~~~qil~aL~yLH 121 (322)
T d1s9ja_ 78 EISICMEHMDGGSLDQVLKKA----GRIPEQILGKVSIAVIKGLTYLR 121 (322)
T ss_dssp EEEEEEECCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999754 35899999999999999999998
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.64 E-value=1.1e-16 Score=168.23 Aligned_cols=97 Identities=23% Similarity=0.348 Sum_probs=86.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
.++|++.+.||+|+||+||+|+.... ++.|||| ++++|||||++++++.. ++.
T Consensus 25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~--g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~ 97 (350)
T d1koaa2 25 LDHYDIHEELGTGAFGVVHRVTERAT--GNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-----DNE 97 (350)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTT--TEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEE-----TTE
T ss_pred ccCeEEEEEEecCcCeEEEEEEECCC--CCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCE
Confidence 35799999999999999999997654 4489999 57899999999999765 788
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|||||||++|+|.+++..+. ..+++.++..|+.||+.||+|||
T Consensus 98 ~~ivmE~~~gg~L~~~l~~~~---~~l~e~~~~~i~~qi~~aL~ylH 141 (350)
T d1koaa2 98 MVMIYEFMSGGELFEKVADEH---NKMSEDEAVEYMRQVCKGLCHMH 141 (350)
T ss_dssp EEEEECCCCSCBHHHHHTCTT---SCBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996442 45999999999999999999998
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=8.9e-17 Score=166.86 Aligned_cols=95 Identities=22% Similarity=0.422 Sum_probs=84.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe------------------------cCCCCcceeeEeeeeeccccCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
++|++.++||+|+||+||+|+....+ +.|||| +.++|||||++++++..
T Consensus 2 ddy~i~~~iG~G~fg~Vy~~~~~~t~--~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~----- 74 (320)
T d1xjda_ 2 EDFILHKMLGKGSFGKVFLAEFKKTN--QFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT----- 74 (320)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTT--EEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-----
T ss_pred CCeEEeeEEecCCCcEEEEEEECCCC--CEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEcc-----
Confidence 67999999999999999999976544 499999 35899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|||||||++|+|.++++.. ..+++.++..++.||+.||+|||
T Consensus 75 ~~~~yivmEy~~~g~L~~~i~~~----~~~~e~~~~~~~~qi~~al~ylH 120 (320)
T d1xjda_ 75 KENLFFVMEYLNGGDLMYHIQSC----HKFDLSRATFYAAEIILGLQFLH 120 (320)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEeecCCCcHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999754 35899999999999999999998
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.4e-16 Score=161.14 Aligned_cols=97 Identities=29% Similarity=0.449 Sum_probs=82.2
Q ss_pred ccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 706 ~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
|+..++||+|+||+||+|+....+. .||+| ++++|||||++++++... ..++..+
T Consensus 11 ~~~~~~iG~G~fg~Vy~~~~~~~~~--~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-~~~~~~~ 87 (270)
T d1t4ha_ 11 LKFDIEIGRGSFKTVYKGLDTETTV--EVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCI 87 (270)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEE
T ss_pred EEeeeEEecCcCcEEEEEEECCCCe--EEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeec-cccCCEE
Confidence 3556789999999999999765444 89999 578999999999997642 2335678
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|+|||||++|+|.+++++. ..+++.++..|+.||++||+|||
T Consensus 88 ~ivmE~~~~g~L~~~l~~~----~~~~~~~~~~~~~qi~~gl~yLH 129 (270)
T d1t4ha_ 88 VLVTELMTSGTLKTYLKRF----KVMKIKVLRSWCRQILKGLQFLH 129 (270)
T ss_dssp EEEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHhcc----ccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999753 35899999999999999999998
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7.7e-17 Score=164.54 Aligned_cols=95 Identities=21% Similarity=0.325 Sum_probs=84.9
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+....+. .|||| ++++|||||++++++.. +
T Consensus 8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~--~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~ 80 (288)
T d1uu3a_ 8 EDFKFGKILGEGSFSTVVLARELATSR--EYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-----D 80 (288)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEEC-----S
T ss_pred CCCEEEEEEeeCCCeEEEEEEECCCCC--EEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEE-----C
Confidence 579999999999999999999765444 89999 46899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|.+++..+ ..+++.++..++.|++.||+|||
T Consensus 81 ~~~~ivmEy~~gg~L~~~~~~~----~~l~e~~~~~~~~qi~~al~ylH 125 (288)
T d1uu3a_ 81 EKLYFGLSYAKNGELLKYIRKI----GSFDETCTRFYTAEIVSALEYLH 125 (288)
T ss_dssp SEEEEEECCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEccCCCCHHHhhhcc----CCCCHHHHHHHHHHHHHHHHhhc
Confidence 8899999999999999998744 45899999999999999999998
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.6e-17 Score=166.77 Aligned_cols=99 Identities=29% Similarity=0.495 Sum_probs=84.8
Q ss_pred HHhcccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 700 FKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 700 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+...++|++.+.||+|+||+||+|+.+++ . .|||| ++++|||||+++|+|. +
T Consensus 13 ~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~-~--~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~------~ 83 (285)
T d1fmka3 13 EIPRESLRLEVKLGQGCFGEVWMGTWNGT-T--RVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS------E 83 (285)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEETTT-E--EEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC------S
T ss_pred EcCHHHEEEeeEEeeCCCeEEEEEEECCC-C--EEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEe------c
Confidence 33456899999999999999999997654 3 69999 5789999999999975 3
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|+|..+++... ...++|.+++.|+.|||+||+|||
T Consensus 84 ~~~~lv~Ey~~~g~l~~~~~~~~--~~~l~~~~~~~i~~~i~~gl~~LH 130 (285)
T d1fmka3 84 EPIYIVTEYMSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVE 130 (285)
T ss_dssp SSCEEEECCCTTCBHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCchhhhhhhcc--cccchHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999987532 245899999999999999999998
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.1e-17 Score=166.49 Aligned_cols=97 Identities=31% Similarity=0.439 Sum_probs=82.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.++|+..+.||+|+||.||+|++++ + .|||| ++++|||||+++|+|.. +.+.+|
T Consensus 6 ~~~~~~~~~lG~G~fg~Vy~~~~~~--~--~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~----~~~~~~ 77 (262)
T d1byga_ 6 MKELKLLQTIGKGEFGDVMLGDYRG--N--KVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLY 77 (262)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETT--E--EEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECC----C--CCE
T ss_pred HHHeEEeEEEecCCCeEEEEEEECC--e--EEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEe----cCCcEE
Confidence 4578889999999999999999743 3 79999 68899999999999854 245689
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||||++|+|.++++.++ ...++|..+++|+.|||.||+|||
T Consensus 78 lv~ey~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~al~ylH 120 (262)
T d1byga_ 78 IVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLE 120 (262)
T ss_dssp EEECCCTTEEHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCHHHHHHhcC--CCCCCHHHHHHHHHHHHhhccccc
Confidence 9999999999999997542 234899999999999999999998
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.63 E-value=2.1e-16 Score=166.04 Aligned_cols=96 Identities=17% Similarity=0.321 Sum_probs=85.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------cCCCCcceeeEeeeeeccccCCCceE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------RSIRHRNLVKIITSCASVDFQGNDFK 763 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------~~l~H~niv~l~~~~~~~~~~~~~~~ 763 (809)
++|+..+.||+|+||+||+|+.... ++.|||| ++++|||||++++++.. ++..
T Consensus 29 d~Y~i~~~lG~G~fg~V~~a~~~~~--~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~~~ 101 (352)
T d1koba_ 29 DYYDILEELGSGAFGVVHRCVEKAT--GRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-----KYEM 101 (352)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-----SSEE
T ss_pred cceEEEEEEecCCCeEEEEEEECCC--CCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEE
Confidence 5699999999999999999996654 3489999 68899999999999765 7889
Q ss_pred EEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 764 ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 764 ~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||||++|+|.+++..+ ...+++.++..|+.||++||+|||
T Consensus 102 ~ivmE~~~gg~L~~~~~~~---~~~l~e~~~~~i~~qi~~aL~ylH 144 (352)
T d1koba_ 102 VLILEFLSGGELFDRIAAE---DYKMSEAEVINYMRQACEGLKHMH 144 (352)
T ss_dssp EEEEECCCCCBHHHHTTCT---TCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988754 245999999999999999999998
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=1e-16 Score=165.33 Aligned_cols=95 Identities=25% Similarity=0.321 Sum_probs=83.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+.|+..+.||+|+||+||+|+....+ +.|||| ++++|||||++++++.. +
T Consensus 15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~--~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~ 87 (309)
T d1u5ra_ 15 KLFSDLREIGHGSFGAVYFARDVRNS--EVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----E 87 (309)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTT--EEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----T
T ss_pred HhcEeeEEEecCCCeEEEEEEECCCC--cEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEE-----C
Confidence 34889999999999999999976544 489999 68899999999999876 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||++|++..++..+ ..++|.++..|+.||++||+|||
T Consensus 88 ~~~~iv~E~~~~g~l~~~~~~~----~~l~e~~~~~i~~qi~~aL~yLH 132 (309)
T d1u5ra_ 88 HTAWLVMEYCLGSASDLLEVHK----KPLQEVEIAAVTHGALQGLAYLH 132 (309)
T ss_dssp TEEEEEEECCSEEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEecCCCchHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998776533 45899999999999999999998
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.62 E-value=1.4e-16 Score=161.79 Aligned_cols=95 Identities=23% Similarity=0.360 Sum_probs=83.5
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------------cCCC-CcceeeEeeeee
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------------RSIR-HRNLVKIITSCA 753 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------------~~l~-H~niv~l~~~~~ 753 (809)
++|+..+.||+|+||+||+|+....+ +.|||| ++++ |||||++++++.
T Consensus 3 ~~y~~~~~iG~G~~g~V~~~~~~~~~--~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 80 (277)
T d1phka_ 3 ENYEPKEILGRGVSSVVRRCIHKPTC--KEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 80 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred ccCEEceEEecCcCeEEEEEEECCCC--CEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence 57999999999999999999976543 489999 1234 999999999976
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+ ++..|||||||++|+|.++++.+ ..+++.+++.|+.||++||+|||
T Consensus 81 ~-----~~~~~ivmE~~~~g~L~~~l~~~----~~l~e~~~~~~~~qi~~al~~lH 127 (277)
T d1phka_ 81 T-----NTFFFLVFDLMKKGELFDYLTEK----VTLSEKETRKIMRALLEVICALH 127 (277)
T ss_dssp C-----SSEEEEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-----CcceEEEEEcCCCchHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 78899999999999999999743 45899999999999999999998
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.6e-16 Score=165.85 Aligned_cols=104 Identities=24% Similarity=0.431 Sum_probs=85.3
Q ss_pred HhcccccccceeccCCceeEEEEEECCC---CceeEEEEe---------------------cCC-CCcceeeEeeeeecc
Q 040849 701 KATDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK---------------------RSI-RHRNLVKIITSCASV 755 (809)
Q Consensus 701 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK---------------------~~l-~H~niv~l~~~~~~~ 755 (809)
...++|++.++||+|+||+||+|+.... .....|||| +++ +|||||+++++|..
T Consensus 34 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~- 112 (325)
T d1rjba_ 34 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL- 112 (325)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred CCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEee-
Confidence 4457899999999999999999997542 223478998 244 89999999999765
Q ss_pred ccCCCceEEEEEeccCCCChhhhhcCCCC-------------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVNGSLEEWLHPKPE-------------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+..|+|||||++|+|.++|+.++. ....++|.+++.|+.|||+||+|||
T Consensus 113 ----~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH 181 (325)
T d1rjba_ 113 ----SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE 181 (325)
T ss_dssp ----SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999986531 1235899999999999999999998
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.8e-16 Score=161.21 Aligned_cols=99 Identities=27% Similarity=0.436 Sum_probs=84.5
Q ss_pred hcccccccceeccCCceeEEEEEECCC-CceeEEEEe---------------------cCCCCcceeeEeeeeeccccCC
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
..++|+..+.||+|+||+||+|++... +.+..|||| ++++|||||+++|++.
T Consensus 5 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~------ 78 (273)
T d1mp8a_ 5 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------ 78 (273)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred CHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe------
Confidence 456799999999999999999997643 234578998 5789999999999974
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|++.+++... ...+++.+++.++.|||+||+|||
T Consensus 79 ~~~~~iv~E~~~~g~l~~~~~~~---~~~l~~~~~~~~~~qi~~gl~ylH 125 (273)
T d1mp8a_ 79 ENPVWIIMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLE 125 (273)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHT---TTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEEeccCCcHHhhhhcc---CCCCCHHHHHHHHHHHHHHhhhhc
Confidence 35689999999999999987644 246899999999999999999998
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=5.6e-16 Score=161.60 Aligned_cols=96 Identities=26% Similarity=0.337 Sum_probs=85.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
.++|+..+.||+|+||+||+|+....+ +.|||| +.++|||||++++++..
T Consensus 4 l~dy~~~~~lG~G~fg~V~~~~~~~~~--~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~----- 76 (337)
T d1o6la_ 4 MNDFDYLKLLGKGTFGKVILVREKATG--RYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT----- 76 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTC--CEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-----
T ss_pred hHhcEEEEEEecCcCeEEEEEEECCCC--CEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecc-----
Confidence 367999999999999999999976544 499999 57899999999999765
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++.+|+|||||++|+|.+++++. ..+++.+++.+++|++.||+|||
T Consensus 77 ~~~~~iv~ey~~gg~L~~~~~~~----~~~~e~~~~~~~~qil~al~ylH 122 (337)
T d1o6la_ 77 HDRLCFVMEYANGGELFFHLSRE----RVFTEERARFYGAEIVSALEYLH 122 (337)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeccCCCchhhhhhcc----cCCcHHHHHHHHHHHhhhhhhhh
Confidence 78899999999999999999854 45899999999999999999998
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.60 E-value=5.4e-16 Score=163.80 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=84.8
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCCCCcceeeEeeeeeccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSIRHRNLVKIITSCASVD 756 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l~H~niv~l~~~~~~~~ 756 (809)
.++|++.+.||+|+||+||+|+....+. .|||| +.++|||||++++++..
T Consensus 3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~--~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~-- 78 (364)
T d1omwa3 3 MNDFSVHRIIGRGGFGEVYGCRKADTGK--MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-- 78 (364)
T ss_dssp STTEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC--
T ss_pred HHhCeeeeEEecCCCeEEEEEEECCCCC--EEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEE--
Confidence 3679999999999999999999765444 89999 35689999999999765
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+|||||++|+|.+++.++ ..+++.++..|+.||+.||+|||
T Consensus 79 ---~~~~~ivmE~~~gg~L~~~l~~~----~~~~e~~~~~~~~qi~~aL~ylH 124 (364)
T d1omwa3 79 ---PDKLSFILDLMNGGDLHYHLSQH----GVFSEADMRFYAAEIILGLEHMH 124 (364)
T ss_dssp ---SSEEEEEECCCCSCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEEecCCCcHHHHHHhc----ccccHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999754 45889999999999999999998
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5.1e-16 Score=158.58 Aligned_cols=98 Identities=30% Similarity=0.549 Sum_probs=84.3
Q ss_pred ccccccceeccCCceeEEEEEECCCC--ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDD--HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~--~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
+.|+..++||+|+||+||+|+++..+ ....|||| ++++|||||+++|+|.. .
T Consensus 7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~-----~ 81 (283)
T d1mqba_ 7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-----Y 81 (283)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-----S
T ss_pred HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEec-----C
Confidence 46888999999999999999986542 23579999 57899999999999875 6
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++|||||++|++.+++... ...++|.++.+|+.|||+||+|||
T Consensus 82 ~~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~i~~~i~~gl~~lH 127 (283)
T d1mqba_ 82 KPMMIITEYMENGALDKFLREK---DGEFSVLQLVGMLRGIAAGMKYLA 127 (283)
T ss_dssp SSEEEEEECCTTEEHHHHHHHT---TTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecccCcchhhhhcc---cccccHHHHHHHHHHHHHhhhhcc
Confidence 7899999999999999988744 246899999999999999999998
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.5e-16 Score=162.57 Aligned_cols=102 Identities=20% Similarity=0.353 Sum_probs=84.3
Q ss_pred cccccccc-eeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 703 TDGFSLEN-LIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 703 ~~~~~~~~-~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
.++|.... +||+|+||+||+|+....+ +.|||| +..+|||||++++++... ...+..+||
T Consensus 10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~--~~vAiK~i~~~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~-~~~~~~~~i 86 (335)
T d2ozaa1 10 IDDYKVTSQVLGLGINGKVLQIFNKRTQ--EKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKCLLI 86 (335)
T ss_dssp GGTEEEEEEEEEECSSCEEEEEEETTTC--CEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEEEE
T ss_pred ccCEEEeeEEeeeccCeEEEEEEECCCC--CEEEEEEECCcHHHHHHHHHHHHhcCCCCCCeEEEEEeec-ccCCCEEEE
Confidence 35788764 6999999999999976543 489999 345899999999987541 223467899
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||+||+|.++++.++ ...+++.++..|+.||++||+|||
T Consensus 87 vmEy~~gg~L~~~i~~~~--~~~l~e~~~~~i~~qi~~al~ylH 128 (335)
T d2ozaa1 87 VMECLDGGELFSRIQDRG--DQAFTEREASEIMKSIGEAIQYLH 128 (335)
T ss_dssp EEECCCSEEHHHHHHSCS--CCCEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHhcC--CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998653 346999999999999999999998
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7e-16 Score=159.01 Aligned_cols=96 Identities=29% Similarity=0.402 Sum_probs=82.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------cCCCCcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~~l~H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
.+|...+.||+|+||+||+|++.+ . .|||| +.++|||||+++|+|.... .+...+|
T Consensus 3 ~~~~l~~~iG~G~fg~Vy~~~~~g--~--~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~-~~~~~~~ 77 (303)
T d1vjya_ 3 RTIVLQESIGKGRFGEVWRGKWRG--E--EVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLW 77 (303)
T ss_dssp GGEEEEEEEECCSSSEEEEEEETT--E--EEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEECC--E--EEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCC-CcceEEE
Confidence 457788999999999999999642 3 89999 4679999999999997631 1234689
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+|||||++|+|.+++++. .++|.++.+++.|+|.||+|+|
T Consensus 78 lv~Ey~~~g~L~~~l~~~-----~l~~~~~~~~~~~ia~gl~~lH 117 (303)
T d1vjya_ 78 LVSDYHEHGSLFDYLNRY-----TVTVEGMIKLALSTASGLAHLH 117 (303)
T ss_dssp EEEECCTTCBHHHHHHHC-----CBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999853 4899999999999999999998
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.7e-16 Score=161.96 Aligned_cols=106 Identities=25% Similarity=0.398 Sum_probs=87.7
Q ss_pred HHHhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCC-CCcceeeEeeeee
Q 040849 699 LFKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSI-RHRNLVKIITSCA 753 (809)
Q Consensus 699 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l-~H~niv~l~~~~~ 753 (809)
|+...++|++.+.||+|+||+||+|++.. ...++.|||| +++ +|||||+++|+|.
T Consensus 18 ~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~ 97 (311)
T d1t46a_ 18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT 97 (311)
T ss_dssp GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred ccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEe
Confidence 33445789999999999999999998742 3456789999 234 7999999999987
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCCC--------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKPE--------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. ++..++|||||++|+|.++++.... ....+++.++..|+.|||+||+|||
T Consensus 98 ~-----~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH 162 (311)
T d1t46a_ 98 I-----GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA 162 (311)
T ss_dssp S-----SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred e-----CCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 6779999999999999999975431 2235899999999999999999998
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=9e-16 Score=158.85 Aligned_cols=95 Identities=22% Similarity=0.333 Sum_probs=84.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+.+..+. .|||| +.++|||||++++++.. +
T Consensus 4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~--~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~ 76 (316)
T d1fota_ 4 QDFQILRTLGTGSFGRVHLIRSRHNGR--YYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-----A 76 (316)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-----S
T ss_pred hHeEEEEEEecCcCcEEEEEEECCCCC--EEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEee-----C
Confidence 579999999999999999999765444 89999 57899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..|+|||||+||+|.+++... ..+++..+..++.||+.||+|||
T Consensus 77 ~~~~ivmE~~~gg~l~~~~~~~----~~~~~~~~~~~~~qi~~al~~lH 121 (316)
T d1fota_ 77 QQIFMIMDYIEGGELFSLLRKS----QRFPNPVAKFYAAEVCLALEYLH 121 (316)
T ss_dssp SEEEEEECCCCSCBHHHHHHHT----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeeEeeecCCcccccccccc----ccccccHHHHHHHHHHHhhhhhc
Confidence 8899999999999999998754 45789999999999999999998
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=9.8e-16 Score=158.03 Aligned_cols=107 Identities=30% Similarity=0.482 Sum_probs=89.3
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEeeeee
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~~~~ 753 (809)
+++.+.++|+..+.||+|+||+||+|+++. ...++.|||| +.++|||||+++++|.
T Consensus 7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~ 86 (301)
T d1lufa_ 7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA 86 (301)
T ss_dssp HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence 444567889999999999999999999753 2245689999 5789999999999987
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCC--------------------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKP--------------------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~--------------------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. .+..++|||||++|+|.++++... .....++|.+++.|+.|+|+||+|||
T Consensus 87 ~-----~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH 157 (301)
T d1lufa_ 87 V-----GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS 157 (301)
T ss_dssp S-----SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-----CCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc
Confidence 5 678999999999999999997432 11235899999999999999999998
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=5.3e-16 Score=157.27 Aligned_cols=97 Identities=31% Similarity=0.388 Sum_probs=79.2
Q ss_pred ccccccceeccCCceeEEEEEECCC-CceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHD-DHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQG 759 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~-~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~ 759 (809)
++|++.+.||+|+||+||+|++... +....|||| ++++|||||+++|+|..
T Consensus 8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~----- 82 (273)
T d1u46a_ 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT----- 82 (273)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-----
T ss_pred HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-----
Confidence 5689999999999999999987533 344579999 57899999999999853
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..++|||||++|++.+++..+. ..++|.+++.++.|||+||+|||
T Consensus 83 -~~~~lv~e~~~~~~l~~~~~~~~---~~l~~~~~~~~~~qi~~gl~ylH 128 (273)
T d1u46a_ 83 -PPMKMVTELAPLGSLLDRLRKHQ---GHFLLGTLSRYAVQVAEGMGYLE 128 (273)
T ss_dssp -SSCEEEEECCTTCBHHHHHHHHG---GGSCHHHHHHHHHHHHHHHHHHH
T ss_pred -cchheeeeeecCcchhhhhhccc---CCCCHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999887542 45999999999999999999998
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.2e-15 Score=157.07 Aligned_cols=103 Identities=27% Similarity=0.459 Sum_probs=80.8
Q ss_pred hcccccccceeccCCceeEEEEEECCCC-----ceeEEEEe---------------------cCC-CCcceeeEeeeeec
Q 040849 702 ATDGFSLENLIGAGSFGSVYKGILNHDD-----HETLVAVK---------------------RSI-RHRNLVKIITSCAS 754 (809)
Q Consensus 702 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~-----~~~~vavK---------------------~~l-~H~niv~l~~~~~~ 754 (809)
..++|+..+.||+|+||.||+|+....+ ....|||| .++ +|||||+++++|..
T Consensus 11 ~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~ 90 (299)
T d1fgka_ 11 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 90 (299)
T ss_dssp CGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred cHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence 4567899999999999999999865432 23579999 233 89999999999875
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++|||||++|+|.++|+.++. ....+++.+++.++.|||+||+|||
T Consensus 91 -----~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH 152 (299)
T d1fgka_ 91 -----DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA 152 (299)
T ss_dssp -----SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999986532 1346899999999999999999998
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=1.1e-15 Score=155.74 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=84.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|++.+.||+|+||+||+|+.... ++.|||| +.++|||||++++++.... ...
T Consensus 7 drY~i~~~lG~G~fg~Vy~a~~~~~--~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~-~~~ 83 (277)
T d1o6ya_ 7 DRYELGEILGFGGMSEVHLARDLRL--HRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PAG 83 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEC-SSS
T ss_pred ceeEEeEEEeeCCCeEEEEEEECCC--CCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeecc-CCC
Confidence 5699999999999999999996654 4489999 5789999999999976521 123
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...|+|||||++|+|.+++... ..+++.++..|+.||++||+|||
T Consensus 84 ~~~~lvmE~~~g~~L~~~~~~~----~~l~~~~~~~i~~qi~~al~~lH 128 (277)
T d1o6ya_ 84 PLPYIVMEYVDGVTLRDIVHTE----GPMTPKRAIEVIADACQALNFSH 128 (277)
T ss_dssp EEEEEEEECCCEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCEehhhhccc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999998743 45899999999999999999998
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.8e-16 Score=159.17 Aligned_cols=107 Identities=24% Similarity=0.467 Sum_probs=88.2
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECC---CCceeEEEEe---------------------cCCCCcceeeEeeeee
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNH---DDHETLVAVK---------------------RSIRHRNLVKIITSCA 753 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~---~~~~~~vavK---------------------~~l~H~niv~l~~~~~ 753 (809)
+|+...++|...+.||+|+||+||+|++.. ...++.|||| ++++|||||+++|+|.
T Consensus 14 ~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~ 93 (308)
T d1p4oa_ 14 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS 93 (308)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred ceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEe
Confidence 344455788999999999999999998742 1234589999 6789999999999986
Q ss_pred ccccCCCceEEEEEeccCCCChhhhhcCCC------CCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 754 SVDFQGNDFKALVYEFMVNGSLEEWLHPKP------EAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 754 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~------~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
. ++..++|||||++|+|.++++..+ .....++|.++..|+.|+|+||+|||
T Consensus 94 ~-----~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH 150 (308)
T d1p4oa_ 94 Q-----GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN 150 (308)
T ss_dssp S-----SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-----CCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5 677999999999999999987432 12234789999999999999999998
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.3e-15 Score=155.55 Aligned_cols=94 Identities=26% Similarity=0.557 Sum_probs=79.3
Q ss_pred cceeccCCceeEEEEEECCCC-ceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCceEEEE
Q 040849 709 ENLIGAGSFGSVYKGILNHDD-HETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGNDFKALV 766 (809)
Q Consensus 709 ~~~ig~G~~g~Vy~~~~~~~~-~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~~~~lv 766 (809)
.++||+|+||+||+|++.+.+ +...|||| ++++|||||+++|+|.. .+...++|
T Consensus 32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~----~~~~~~lv 107 (311)
T d1r0pa_ 32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SEGSPLVV 107 (311)
T ss_dssp EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEE----TTTEEEEE
T ss_pred ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEe----cCCceEEE
Confidence 478999999999999986542 33468999 57899999999999865 24578999
Q ss_pred EeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 767 YEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 767 ~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
||||++|+|.++++... ..+++.++++|+.|+|+||.|+|
T Consensus 108 ~E~~~~g~l~~~~~~~~---~~~~~~~~~~i~~qia~gL~~lH 147 (311)
T d1r0pa_ 108 LPYMKHGDLRNFIRNET---HNPTVKDLIGFGLQVAKGMKFLA 147 (311)
T ss_dssp EECCTTCBHHHHHHCTT---CCCBHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCchhhhhcccc---ccchHHHHHHHHHHHHHhhhhhc
Confidence 99999999999998543 45789999999999999999998
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.7e-15 Score=156.17 Aligned_cols=109 Identities=23% Similarity=0.300 Sum_probs=87.7
Q ss_pred HHHHHhcccccccceeccCCceeEEEEEECCC---CceeEEEEe----------------------cCCCCcceeeEeee
Q 040849 697 QNLFKATDGFSLENLIGAGSFGSVYKGILNHD---DHETLVAVK----------------------RSIRHRNLVKIITS 751 (809)
Q Consensus 697 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~---~~~~~vavK----------------------~~l~H~niv~l~~~ 751 (809)
.+|+...++|+..+.||+|+||+||+|+.... ..++.|||| +..+|+|||+++++
T Consensus 6 ~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~ 85 (299)
T d1ywna1 6 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 85 (299)
T ss_dssp HHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeee
Confidence 44545567899999999999999999997542 245689999 23479999999998
Q ss_pred eeccccCCCceEEEEEeccCCCChhhhhcCCCC------------CCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 752 CASVDFQGNDFKALVYEFMVNGSLEEWLHPKPE------------APRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 752 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.. ++...++|||||++|+|.++++.++. ....++|.+++.|+.|||+||+|||
T Consensus 86 ~~~----~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH 151 (299)
T d1ywna1 86 CTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA 151 (299)
T ss_dssp ECS----TTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH
T ss_pred ecc----CCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 754 25578999999999999999975421 1245899999999999999999998
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.7e-15 Score=155.81 Aligned_cols=97 Identities=25% Similarity=0.489 Sum_probs=81.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCc--eeEEEEe---------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDH--ETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~--~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..++||+|+||+||+|++...+. ...|||| ++++|||||+++|+|..
T Consensus 9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~------ 82 (317)
T d1xkka_ 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------ 82 (317)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEES------
T ss_pred HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------
Confidence 469999999999999999999765432 2368888 57899999999999874
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+..+++||||++|+|.+++..+ ...++|.++++|+.|||+||+|||
T Consensus 83 ~~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~i~~qi~~gl~yLH 128 (317)
T d1xkka_ 83 STVQLITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKGMNYLE 128 (317)
T ss_dssp SSEEEEEECCTTCBHHHHHHHT---SSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEeccCCccccccccc---ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999988754 356899999999999999999998
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.9e-15 Score=138.55 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=73.7
Q ss_pred cccCCCCccEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCC
Q 040849 94 HIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKL 173 (809)
Q Consensus 94 ~l~~l~~L~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 173 (809)
.+.+...+++|||++|+|+. +|..+..+++|++|||++|.++.. + .|..+++|++|++++|+++...+..+..+++|
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCcccccccccc
Confidence 45566677788888887774 355566677777777777777633 2 36677777777777777765545455667777
Q ss_pred CEEEcccccCcccCC-ccCCCCCCCCEEEcccCcccc
Q 040849 174 RTLAVHYNNLSGQIP-SSFGNLSSLEVLSASANQFVG 209 (809)
Q Consensus 174 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 209 (809)
++|++++|+++.... ..+..+++|++|++++|.++.
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~ 126 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred ccceeccccccccccccccccccccchhhcCCCcccc
Confidence 777777777663211 345666666666666666653
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.2e-15 Score=153.88 Aligned_cols=226 Identities=17% Similarity=0.201 Sum_probs=133.3
Q ss_pred CcEEEccCCcccccCCccccCCCCCCeeeCCCccceec-CCccccCCCCCCEEEeeCCeeecccCcCCcCCCCccEEEcc
Q 040849 372 LRILRVGNNQLFGNIPSGLRNLVNLERLLLEGNQFTGR-IPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITLSFD 450 (809)
Q Consensus 372 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 450 (809)
+..+.++...+..... ......+|++||++++.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus 25 ~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls 103 (284)
T d2astb2 25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103 (284)
T ss_dssp CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence 4555555555443222 233456778888887777543 23446677788888888887776666677777788888887
Q ss_pred cc-cCccc-CCccccCCCCCcEEeCcCC-cCccc-cCcchhcc-cCCceEEEccCC--cCccc-CCCCccCCCCCCEEEc
Q 040849 451 KN-MLEGS-IPSSLGKCQNLILLGLSNN-NLTGT-IPTEVIGL-SSLSIYLDLSQN--QLNGT-LPSNFGILKNLGVLDV 522 (809)
Q Consensus 451 ~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l-~~l~~~L~Ls~N--~l~~~-~p~~~~~l~~L~~L~L 522 (809)
++ .+++. +.....++++|++|+++++ .++.. ++..+... +.+ +.|++++. .++.. +......+++|++||+
T Consensus 104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L 182 (284)
T d2astb2 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182 (284)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred ccccccccccchhhHHHHhccccccccccccccccchhhhccccccc-chhhhccccccccccccccccccccccccccc
Confidence 74 45432 1122345778888888875 34321 22223333 344 66777654 23221 2222345677777777
Q ss_pred ccc-ccccccCccccCCCCCCEEeCcC-CccccccchhhcCCCCCCEEeCCCCCcccccccccccCCCCCeEEccCCccc
Q 040849 523 SEN-KLSGEIPNSLGSCVRLEQLGMNG-NFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 523 s~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 600 (809)
++| .+++..+..+..+++|++|+|++ +.+++.....++++++|+.|+++++--.+.++.....++.| .+..++++
T Consensus 183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls 259 (284)
T d2astb2 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFT 259 (284)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSC
T ss_pred ccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCC
Confidence 775 46666667777777777787777 45666666667777777777777762222222222334443 34555555
Q ss_pred cc
Q 040849 601 GE 602 (809)
Q Consensus 601 g~ 602 (809)
+.
T Consensus 260 ~~ 261 (284)
T d2astb2 260 TI 261 (284)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.7e-15 Score=154.70 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=101.4
Q ss_pred cEEeCCCCCCCccCCccccccc--cCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCC-CcccccCCCCCCEEEc
Q 040849 102 RVLDLKNNSFRNEIPQEIGYLF--RLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGK-VPRKLGSLSKLRTLAV 178 (809)
Q Consensus 102 ~~LdLs~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L 178 (809)
+.|||+++.+.. +.++.+. .+..+.++...+..... ......+|++||+++|.+... ++..+..+++|++|+|
T Consensus 3 ~~lDLs~~~l~~---~~l~~l~~~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L 78 (284)
T d2astb2 3 QTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78 (284)
T ss_dssp SEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred CEEECCCCCCCc---hHHHHHHhccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence 356666665542 2222221 23344444444332222 223445677777776665532 2334566677777777
Q ss_pred ccccCcccCCccCCCCCCCCEEEcccC-ccccc-CcccccCCCCccEEEeecC-cCCCC-cchhccC-CCCCceeccCCc
Q 040849 179 HYNNLSGQIPSSFGNLSSLEVLSASAN-QFVGQ-IPKTLSQLKRMRFIGFGVN-KLSGE-IPFSIYN-LSSLNYFEFPVN 253 (809)
Q Consensus 179 s~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~-l~~L~~L~l~~n 253 (809)
+++.+++..+..++.+++|++|+++++ .++.. +......+++|++|+++++ .++.. ....+.. .++|+.|+++++
T Consensus 79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~ 158 (284)
T d2astb2 79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158 (284)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence 777766666666666777777777764 34422 1122345666777777664 23321 1112222 345666666543
Q ss_pred --ccccccChhhhcCCCCCcEEEccCc-cccccCCcccccCCCCceEecCCC
Q 040849 254 --QLQGSLPSDLGFTLPNLERLNLGEN-QFTGPIPASISNASHLMRLTIPIN 302 (809)
Q Consensus 254 --~l~~~~p~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~l~~n 302 (809)
.++...-..+...+|+|++|++++| .+++.....+..+++|++|+++++
T Consensus 159 ~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C 210 (284)
T d2astb2 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 210 (284)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred ccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCC
Confidence 2332222222234667777777664 355555555666666666666653
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=4.8e-15 Score=155.50 Aligned_cols=95 Identities=24% Similarity=0.304 Sum_probs=85.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
++|+..+.||+|+||+||+|+.+..+. .|||| +.++|||||++++++.. .
T Consensus 41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~--~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~ 113 (350)
T d1rdqe_ 41 DQFDRIKTLGTGSFGRVMLVKHKESGN--HYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-----N 113 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCC--EEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----S
T ss_pred cCeEEEEEeecCcCcEEEEEEECCCCC--EEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccc-----c
Confidence 579999999999999999999765444 89999 57899999999999765 7
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++||||+++|+|.+++.+. ..+++.++..|+.||++||+|||
T Consensus 114 ~~~~~v~e~~~~g~l~~~l~~~----~~l~e~~~~~i~~qi~~aL~yLH 158 (350)
T d1rdqe_ 114 SNLYMVMEYVAGGEMFSHLRRI----GRFSEPHARFYAAQIVLTFEYLH 158 (350)
T ss_dssp SEEEEEEECCTTCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhHhhc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999754 35899999999999999999998
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=5.5e-15 Score=152.14 Aligned_cols=96 Identities=25% Similarity=0.411 Sum_probs=81.1
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+....++ .|||| ++++|||||++++++.. +.
T Consensus 2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~--~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~-----~~ 74 (298)
T d1gz8a_ 2 ENFQKVEKIGEGTYGVVYKARNKLTGE--VVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----EN 74 (298)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TT
T ss_pred CCCEeccEEecCcCeEEEEEEECCCCC--EEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEecccccc-----cc
Confidence 689999999999999999999765444 89999 67899999999999776 78
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..|+|||||.++.+. ++..+ ....+++.++..|+.|++.||+|||
T Consensus 75 ~~~iv~e~~~~~~~~-~~~~~--~~~~l~e~~~~~~~~qil~~L~yLH 119 (298)
T d1gz8a_ 75 KLYLVFEFLHQDLKK-FMDAS--ALTGIPLPLIKSYLFQLLQGLAFCH 119 (298)
T ss_dssp EEEEEEECCSEEHHH-HHHHT--TTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEeecCCchhh-hhhhh--cccCCCHHHHHHHHHHHHHHHHHhh
Confidence 899999999865444 44322 2345999999999999999999998
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.1e-14 Score=134.56 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=78.3
Q ss_pred cCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCC
Q 040849 463 GKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 542 (809)
Q Consensus 463 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 542 (809)
.++.+++.|||++|+|+ .+|..+..++.| +.|+|++|+|+.. +.|..+++|++|++++|+++...+..+..+++|+
T Consensus 15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L-~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIP-VIENLGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCcCcCcEEECCCCCCC-ccCccccccccC-CEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 34445555555555555 334444444555 4555555555533 2356677777777777777755555566677777
Q ss_pred EEeCcCCccccccc-hhhcCCCCCCEEeCCCCCccccc---ccccccCCCCCeEE
Q 040849 543 QLGMNGNFFQGNIP-SSFSSLRGIENLDLSRNNLSGRI---PKYFENFLFLQNLN 593 (809)
Q Consensus 543 ~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~---p~~~~~l~~L~~l~ 593 (809)
.|++++|+++.... ..+..+++|+.|++++|+++... +..+..+++|++||
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 77777777764322 45677777777888877776432 23466777777776
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=2e-14 Score=126.10 Aligned_cols=103 Identities=21% Similarity=0.272 Sum_probs=82.1
Q ss_pred cEEeCCCCCCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCCCCCCEEEcccc
Q 040849 102 RVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYN 181 (809)
Q Consensus 102 ~~LdLs~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 181 (809)
|+|||++|+++. ++ .+..+++|++|++++|.++ .+|+.|+.+++|++|++++|.++.. | .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 578899999873 34 4888888999999999887 5677788888899999999888753 4 4888888888888888
Q ss_pred cCcccC-CccCCCCCCCCEEEcccCcccc
Q 040849 182 NLSGQI-PSSFGNLSSLEVLSASANQFVG 209 (809)
Q Consensus 182 ~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~ 209 (809)
+++... ...+..+++|++|++++|+++.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 887443 2467888888888888888864
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.51 E-value=2.6e-15 Score=158.46 Aligned_cols=186 Identities=21% Similarity=0.212 Sum_probs=115.1
Q ss_pred cCCCCCCEEEeeCCeeecc----cCcCCcCCCCccEEEcccccCcccCCc-------------cccCCCCCcEEeCcCCc
Q 040849 415 GDLHKLQRLGLQGNKFLGE----IPSSIGNLTLLITLSFDKNMLEGSIPS-------------SLGKCQNLILLGLSNNN 477 (809)
Q Consensus 415 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~-------------~l~~l~~L~~L~Ls~N~ 477 (809)
..+++|+.|+|++|.+... +...+...++|++|++++|.+...... .....+.|+.+++++|+
T Consensus 90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (344)
T d2ca6a1 90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 169 (344)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence 3445555555555555432 112223345555555555554321100 11234567777777777
Q ss_pred Cccc----cCcchhcccCCceEEEccCCcCccc-----CCCCccCCCCCCEEEccccccccc----cCccccCCCCCCEE
Q 040849 478 LTGT----IPTEVIGLSSLSIYLDLSQNQLNGT-----LPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQL 544 (809)
Q Consensus 478 l~~~----~p~~~~~l~~l~~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L 544 (809)
++.. +...+.....+ +.|++++|+++.. +...+..+++|+.|+|++|.++.. +...+..++.|++|
T Consensus 170 i~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L 248 (344)
T d2ca6a1 170 LENGSMKEWAKTFQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248 (344)
T ss_dssp CTGGGHHHHHHHHHHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred ccccccccccchhhhhhhh-cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence 6532 22233445556 6777777777531 334567788899999999988643 34567788999999
Q ss_pred eCcCCccccccchh----hcC--CCCCCEEeCCCCCccccc----ccccc-cCCCCCeEEccCCcccc
Q 040849 545 GMNGNFFQGNIPSS----FSS--LRGIENLDLSRNNLSGRI----PKYFE-NFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 545 ~Ls~N~l~~~~p~~----~~~--l~~L~~LdLs~N~l~~~~----p~~~~-~l~~L~~l~ls~N~l~g 601 (809)
+|++|.+++.-... +.. .+.|++||+++|+++... ...+. +.+.|++|++++|++..
T Consensus 249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 99999988653333 333 367999999999987542 33342 57889999999998863
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=5.9e-14 Score=123.07 Aligned_cols=100 Identities=26% Similarity=0.264 Sum_probs=47.2
Q ss_pred EEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCc
Q 040849 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNL 575 (809)
Q Consensus 496 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 575 (809)
|+|++|+++. ++ .+..+++|++||+++|+|+ .+|..++.+++|+.|++++|.|++. | .+..+++|+.|++++|++
T Consensus 3 L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i 77 (124)
T d1dcea3 3 LHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRL 77 (124)
T ss_dssp EECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCC
T ss_pred EEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCcc
Confidence 4444444442 22 2444455555555555554 3344455555555555555555432 2 245555555555555555
Q ss_pred cccc-ccccccCCCCCeEEccCCccc
Q 040849 576 SGRI-PKYFENFLFLQNLNLSFNHFE 600 (809)
Q Consensus 576 ~~~~-p~~~~~l~~L~~l~ls~N~l~ 600 (809)
+... ...+..+++|+++++++|+++
T Consensus 78 ~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 78 QQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCchhhcCCCCCCEEECCCCcCC
Confidence 4332 134445555555555555554
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.5e-15 Score=151.34 Aligned_cols=91 Identities=21% Similarity=0.345 Sum_probs=77.5
Q ss_pred ccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeeccccCCCce
Q 040849 708 LENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDFQGNDF 762 (809)
Q Consensus 708 ~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~~~~~~ 762 (809)
..++||+|+||+||+|+....+ +.|||| +.++|||||++++++.. ++.
T Consensus 2 ~l~~lG~G~fg~Vy~~~~~~~~--~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~-----~~~ 74 (299)
T d1ua2a_ 2 KLDFLGEGQFATVYKARDKNTN--QIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH-----KSN 74 (299)
T ss_dssp EEEEEEEETTEEEEEEECSSCC--SEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC-----TTC
T ss_pred cceEeccCcCeEEEEEEECCCC--cEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeecc-----CCc
Confidence 3578999999999999965543 489999 45789999999999765 778
Q ss_pred EEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 763 KALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 763 ~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.|||||||++|++..+.... ..+++.++..|++||+.||+|||
T Consensus 75 ~~ivmE~~~~~~~~~~~~~~----~~l~~~~~~~~~~qil~aL~~lH 117 (299)
T d1ua2a_ 75 ISLVFDFMETDLEVIIKDNS----LVLTPSHIKAYMLMTLQGLEYLH 117 (299)
T ss_dssp CEEEEECCSEEHHHHHTTCC----SSCCSSHHHHHHHHHHHHHHHHH
T ss_pred eeehhhhhcchHHhhhhhcc----cCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999998887766532 45888999999999999999998
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.2e-14 Score=153.12 Aligned_cols=102 Identities=25% Similarity=0.365 Sum_probs=80.4
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe----------------cCCCCcceeeEeeeeeccc-cCCCceEEEEE
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------RSIRHRNLVKIITSCASVD-FQGNDFKALVY 767 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------~~l~H~niv~l~~~~~~~~-~~~~~~~~lv~ 767 (809)
+|+..++||+|+||+||+|+....+. .|||| ++++|||||++++++.... ..+..++||||
T Consensus 21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~--~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~ 98 (350)
T d1q5ka_ 21 SYTDTKVIGNGSFGVVYQAKLCDSGE--LVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVL 98 (350)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEECCSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEE
T ss_pred CcEeeeEEeeCcCeEEEEEEECCCCC--EEEEEEECccchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEE
Confidence 58888999999999999999765444 89999 5689999999999986522 13345689999
Q ss_pred eccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 768 EFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 768 Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||++|.+..+.+.. .....+++.++..|+.||++||+|||
T Consensus 99 Ey~~~~~~~~l~~~~-~~~~~l~~~~~~~i~~qil~aL~yLH 139 (350)
T d1q5ka_ 99 DYVPETVYRVARHYS-RAKQTLPVIYVKLYMYQLFRSLAYIH 139 (350)
T ss_dssp ECCSEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCccHHHHHhhh-hccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999877544433211 12356999999999999999999998
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.47 E-value=4.8e-15 Score=156.33 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=120.4
Q ss_pred ccCCCCCCeeeCCCccceec----CCccccCCCCCCEEEeeCCeeecccCc-------------CCcCCCCccEEEcccc
Q 040849 390 LRNLVNLERLLLEGNQFTGR----IPGSIGDLHKLQRLGLQGNKFLGEIPS-------------SIGNLTLLITLSFDKN 452 (809)
Q Consensus 390 l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------------~~~~l~~L~~L~L~~N 452 (809)
+...++|+.|+|++|.++.. +...+..+++|+.|++++|.+...... .....+.|+.+++++|
T Consensus 89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n 168 (344)
T d2ca6a1 89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 168 (344)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence 44556677777777766532 122334566777777777765321110 1124556777777777
Q ss_pred cCccc----CCccccCCCCCcEEeCcCCcCccc-----cCcchhcccCCceEEEccCCcCccc----CCCCccCCCCCCE
Q 040849 453 MLEGS----IPSSLGKCQNLILLGLSNNNLTGT-----IPTEVIGLSSLSIYLDLSQNQLNGT----LPSNFGILKNLGV 519 (809)
Q Consensus 453 ~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~l~~~L~Ls~N~l~~~----~p~~~~~l~~L~~ 519 (809)
.+... +...+..++.|+.|++++|+++.. +...+...+.+ +.|++++|.++.. +...+..+++|++
T Consensus 169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L-~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~ 247 (344)
T d2ca6a1 169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-KVLDLQDNTFTHLGSSALAIALKSWPNLRE 247 (344)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-CEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhh-cccccccccccccccccccccccccccchh
Confidence 76532 223345567788888888887632 23345556666 6788888887532 3345667889999
Q ss_pred EEccccccccccCccc----c--CCCCCCEEeCcCCccccc----cchhhc-CCCCCCEEeCCCCCcccc
Q 040849 520 LDVSENKLSGEIPNSL----G--SCVRLEQLGMNGNFFQGN----IPSSFS-SLRGIENLDLSRNNLSGR 578 (809)
Q Consensus 520 L~Ls~N~l~~~~p~~~----~--~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~LdLs~N~l~~~ 578 (809)
|+|++|.|++.....+ . ..+.|++|++++|+++.. +...+. ++++|+.|||++|+++..
T Consensus 248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence 9999999886533333 2 246799999999998753 333443 578899999999999753
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.47 E-value=2.9e-14 Score=145.84 Aligned_cols=94 Identities=21% Similarity=0.315 Sum_probs=82.3
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..++||+|+||+||+|+.+.+ +.|||| ++++|||||++++++.. ++
T Consensus 2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~---~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~ 73 (286)
T d1ob3a_ 2 EKYHGLEKIGEGTYGVVYKAQNNYG---ETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-----KK 73 (286)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTS---CEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-----SS
T ss_pred CCceeccEEecCCCcEEEEEEeCCC---CEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeeccc-----CC
Confidence 5799999999999999999997643 389999 57899999999999765 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+++|||+.++.+..+.+.. ..+++.++..|+.||++||+|||
T Consensus 74 ~~~i~~e~~~~~~~~~~~~~~----~~l~~~~~~~i~~qi~~~L~~LH 117 (286)
T d1ob3a_ 74 RLVLVFEHLDQDLKKLLDVCE----GGLESVTAKSFLLQLLNGIAYCH 117 (286)
T ss_dssp CEEEEEECCSEEHHHHHHTST----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeehhhhHHHHHhhc----CCcchhhhHHHHHHHHHHHHHhc
Confidence 899999999988777776533 45999999999999999999998
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.2e-14 Score=145.37 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=80.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe--------------------------cCC--CCcceeeEeeeeecc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------RSI--RHRNLVKIITSCASV 755 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------~~l--~H~niv~l~~~~~~~ 755 (809)
++|++.+.||+|+||+||+|+....+. .|||| +++ .|||||++++++..
T Consensus 4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~--~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~- 80 (273)
T d1xwsa_ 4 SQYQVGPLLGSGGFGSVYSGIRVSDNL--PVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER- 80 (273)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCC--EEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC-
T ss_pred CeEEEeEEEeeCCCeEEEEEEECCCCC--EEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEee-
Confidence 468999999999999999999765444 89999 123 39999999999765
Q ss_pred ccCCCceEEEEEeccCC-CChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 756 DFQGNDFKALVYEFMVN-GSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 756 ~~~~~~~~~lv~Ey~~~-GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..|+||||+++ +++.+++..+ ..+++.++..++.||++||+|||
T Consensus 81 ----~~~~~lv~e~~~~~~~l~~~~~~~----~~l~e~~~~~~~~qi~~al~~lH 127 (273)
T d1xwsa_ 81 ----PDSFVLILERPEPVQDLFDFITER----GALQEELARSFFWQVLEAVRHCH 127 (273)
T ss_dssp ----SSEEEEEEECCSSEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCeEEEEEEeccCcchHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7889999999986 6888888643 45899999999999999999998
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.7e-14 Score=146.60 Aligned_cols=103 Identities=19% Similarity=0.295 Sum_probs=83.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe-------------------------cCCCCcceeeEeeeeecccc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------------RSIRHRNLVKIITSCASVDF 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------------~~l~H~niv~l~~~~~~~~~ 757 (809)
.++|+..+.||+|+||+||+|+.... .++.|||| +..+|||||++++++.....
T Consensus 6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~-~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~ 84 (305)
T d1blxa_ 6 DQQYECVAEIGEGAYGKVFKARDLKN-GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 84 (305)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTT-TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred cCCEEEEEEEecccCeEEEEEEEECC-CCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence 46799999999999999999996433 23479999 23479999999999875444
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+.....+++||||++|.+....... ...+++..+..|+.|++.||+|||
T Consensus 85 ~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~qi~~aL~yLH 133 (305)
T d1blxa_ 85 DRETKLTLVFEHVDQDLTTYLDKVP---EPGVPTETIKDMMFQLLRGLDFLH 133 (305)
T ss_dssp SSEEEEEEEEECCSCBHHHHHHHSC---TTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEEEeccCCchhhhhhcc---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999998876555433 345899999999999999999998
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=7.4e-14 Score=143.43 Aligned_cols=95 Identities=21% Similarity=0.352 Sum_probs=84.4
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
++|+..+.||+|+||+||+|+...++. .|||| +.++|||||++++++.. ..
T Consensus 2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~--~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~-----~~ 74 (292)
T d1unla_ 2 QKYEKLEKIGEGTYGTVFKAKNRETHE--IVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-----DK 74 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SS
T ss_pred CCCEeeeEEecCcCeEEEEEEECCCCc--EEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccc-----cc
Confidence 578999999999999999999765544 89999 57899999999999876 77
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..++||||+.++++..+++.. +.+++.++..++.|+++||+|||
T Consensus 75 ~~~iv~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~q~~~aL~~lH 118 (292)
T d1unla_ 75 KLTLVFEFCDQDLKKYFDSCN----GDLDPEIVKSFLFQLLKGLGFCH 118 (292)
T ss_dssp EEEEEEECCSEEHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeeeccccccccccccc----cccchhHHHHHHHHHHHHHHHhh
Confidence 899999999999999888744 45889999999999999999998
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.43 E-value=7.4e-14 Score=145.83 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=80.2
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe-----------------cCC-CCcceeeEeeeeeccccCCCceEEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-----------------RSI-RHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-----------------~~l-~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
++|++.+.||+|+||+||+|+.... ++.|||| +.+ .|||||++++++.. ......++
T Consensus 35 d~y~i~~~LG~G~fg~V~~a~~~~~--~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~---~~~~~~~~ 109 (328)
T d3bqca1 35 DDYQLVRKLGRGKYSEVFEAINITN--NEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKD---PVSRTPAL 109 (328)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEEC---TTTCSEEE
T ss_pred cCeEEEEEEecCcCeEEEEEEECCC--CCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEe---cCCCceeE
Confidence 5799999999999999999996554 4499999 355 49999999998764 23567999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||++|+|.++.+ .+++.++..|+.||++||+|||
T Consensus 110 v~e~~~~~~L~~~~~-------~l~e~~i~~i~~qil~aL~~LH 146 (328)
T d3bqca1 110 VFEHVNNTDFKQLYQ-------TLTDYDIRFYMYEILKALDYCH 146 (328)
T ss_dssp EEECCCSCBGGGTTT-------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCCcHHHHhc-------CCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999987642 3899999999999999999998
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=7.3e-14 Score=147.32 Aligned_cols=100 Identities=15% Similarity=0.264 Sum_probs=82.5
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccccCCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDFQGN 760 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~~~~ 760 (809)
.+.|+..+.||+|+||+||+|+.... ++.|||| +.++|||||++++++......+.
T Consensus 17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~--~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~ 94 (348)
T d2gfsa1 17 PERYQNLSPVGSGAYGSVCAAFDTKT--GLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE 94 (348)
T ss_dssp ETTEEEEEECGGGTTSSEEEEEETTT--TEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTT
T ss_pred CCCeEEEEEEecCCCeEEEEEEECCC--CCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecccccc
Confidence 46799999999999999999996554 4499999 47899999999998764322223
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...++||||+.+|+|.++++.+ .+++.++..|+.||+.||+|||
T Consensus 95 ~~~~~i~~~~~gg~L~~~~~~~-----~l~e~~~~~i~~qil~aL~~LH 138 (348)
T d2gfsa1 95 FNDVYLVTHLMGADLNNIVKCQ-----KLTDDHVQFLIYQILRGLKYIH 138 (348)
T ss_dssp CCCCEEEEECCSEEHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeecCCchhhhcccc-----cccHHHHHHHHHHHHHHHHHHH
Confidence 4456677888899999999643 4999999999999999999998
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=8.8e-14 Score=144.17 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=82.3
Q ss_pred ccccccceeccCCceeEEEEEECC-CCceeEEEEe------------------------cCCCC-cceeeEeeeeecccc
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNH-DDHETLVAVK------------------------RSIRH-RNLVKIITSCASVDF 757 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~-~~~~~~vavK------------------------~~l~H-~niv~l~~~~~~~~~ 757 (809)
++|+..+.||+|+||+||+|+... ..+++.|||| ++++| ||||++++++..
T Consensus 24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~--- 100 (322)
T d1vzoa_ 24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT--- 100 (322)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE---
T ss_pred hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc---
Confidence 679999999999999999998643 2345589999 34545 899999999765
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....++|||||++|+|.++++.. ..+++..+..++.|++.||+|+|
T Consensus 101 --~~~~~~v~e~~~~~~L~~~i~~~----~~~~e~~~~~~~~Qi~~al~~lH 146 (322)
T d1vzoa_ 101 --ETKLHLILDYINGGELFTHLSQR----ERFTEHEVQIYVGEIVLALEHLH 146 (322)
T ss_dssp --TTEEEEEECCCCSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCceeeeeecccccHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHhh
Confidence 77899999999999999999754 34678899999999999999998
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.7e-13 Score=143.89 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=78.0
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe---------------------cCCCCcceeeEeeeeeccccCCCc
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIITSCASVDFQGND 761 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK---------------------~~l~H~niv~l~~~~~~~~~~~~~ 761 (809)
.+.|+..+.||+|+||+||+|+....++ .|||| +.++|||||++++++....+....
T Consensus 7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~--~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~ 84 (345)
T d1pmea_ 7 GPRYTNLSYIGEGAYGMVCSAYDNVNKV--RVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 84 (345)
T ss_dssp CTTEEEEEECC---CCCEEEEEETTTCS--EEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred CCCeEEEEEEeeccCeEEEEEEECCCCc--EEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccc
Confidence 3569999999999999999999655444 89999 578999999999998764333334
Q ss_pred eEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 762 FKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 762 ~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+++ ||+.+|+|.++++.+ .+++..+..++.|+++||+|||
T Consensus 85 ~~~l~-~~~~~g~L~~~l~~~-----~l~~~~i~~i~~qil~al~yLH 126 (345)
T d1pmea_ 85 DVYLV-THLMGADLYKLLKTQ-----HLSNDHICYFLYQILRGLKYIH 126 (345)
T ss_dssp CEEEE-EECCCEEHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEE-EeecCCchhhhhhcC-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 45555 566799999999743 4899999999999999999998
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.5e-13 Score=144.52 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=75.9
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc-cCC
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD-FQG 759 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~-~~~ 759 (809)
.+.|+..+.||+|+||+||+|+.... ++.|||| +.++|||||++++++.... ...
T Consensus 17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~--~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~ 94 (346)
T d1cm8a_ 17 RAVYRDLQPVGSGAYGAVCSAVDGRT--GAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD 94 (346)
T ss_dssp BSSEEEEEEC------CEEEEEETTT--CCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTT
T ss_pred CCcEEEEEEEecCCCeEEEEEEECCC--CCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccc
Confidence 46799999999999999999996554 3489999 4689999999999986532 123
Q ss_pred CceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 760 NDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 760 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
....|+||||| +++|..+++. ..+++..+..|+.||+.||+|||
T Consensus 95 ~~~~~lv~e~~-~~~l~~~~~~-----~~l~~~~~~~~~~qi~~aL~~LH 138 (346)
T d1cm8a_ 95 FTDFYLVMPFM-GTDLGKLMKH-----EKLGEDRIQFLVYQMLKGLRYIH 138 (346)
T ss_dssp CCCCEEEEECC-SEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEecc-cccHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHH
Confidence 34679999999 5678887763 34999999999999999999998
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.5e-13 Score=143.17 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=77.8
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeecccc-CCC
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVDF-QGN 760 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~~-~~~ 760 (809)
++|+..++||+|+||+||+|+.... ++.|||| +.++|||||++++++..... ++.
T Consensus 17 ~~Y~i~~~LG~G~fg~V~~~~d~~t--~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~ 94 (355)
T d2b1pa1 17 KRYQNLKPIGSGAQGIVCAAYDAVL--DRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 94 (355)
T ss_dssp TTEEEEEECSCC--CEEEEEEETTT--TEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred CCeEEEEEeecCcCeEEEEEEECCC--CCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence 5799999999999999999996544 4589999 47899999999999864321 345
Q ss_pred ceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 761 DFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 761 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
...|+|||||.+|.+ +.++ ..+++.+++.++.||+.||+|||
T Consensus 95 ~~~~iv~Ey~~~~l~-~~~~------~~~~~~~i~~~~~qil~gl~~LH 136 (355)
T d2b1pa1 95 QDVYLVMELMDANLC-QVIQ------MELDHERMSYLLYQMLCGIKHLH 136 (355)
T ss_dssp CEEEEEEECCSEEHH-HHHT------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeccchHHH-Hhhh------cCCCHHHHHHHHHHHHHHHHHhh
Confidence 789999999976554 4444 23789999999999999999998
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=5.7e-13 Score=138.34 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=80.6
Q ss_pred cccccccceeccCCceeEEEEEECCCCceeEEEEe----------------------cCCCCcceeeEeeeeeccc---c
Q 040849 703 TDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK----------------------RSIRHRNLVKIITSCASVD---F 757 (809)
Q Consensus 703 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK----------------------~~l~H~niv~l~~~~~~~~---~ 757 (809)
.++|+..+.||+|+||+||+|+....++ .|||| ++++||||+++++++.... .
T Consensus 9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~--~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~ 86 (318)
T d3blha1 9 VSKYEKLAKIGQGTFGEVFKARHRKTGQ--KVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYN 86 (318)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCC--EEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred cCCEEEEEEEecCcCeEEEEEEECCCCC--EEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccc
Confidence 4679999999999999999999765444 89999 5789999999999976521 1
Q ss_pred CCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 758 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
..+...|+|||||++|.+..+... ...+++.++..|+.|+++||+|||
T Consensus 87 ~~~~~~~iv~e~~~~~~~~~~~~~----~~~~~~~~~~~i~~qil~~l~~lH 134 (318)
T d3blha1 87 RCKGSIYLVFDFCEHDLAGLLSNV----LVKFTLSEIKRVMQMLLNGLYYIH 134 (318)
T ss_dssp ----CEEEEEECCCEEHHHHHTCT----TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEEeccCCCccchhhhc----ccccccHHHHHHHHHHHHHHHHhc
Confidence 224568999999998877665543 245889999999999999999998
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.31 E-value=1.2e-12 Score=133.71 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=81.0
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCC-CcceeeEeeeeeccccCCCceEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIR-HRNLVKIITSCASVDFQGNDFKA 764 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~-H~niv~l~~~~~~~~~~~~~~~~ 764 (809)
++|++.+.||+|+||+||+|+....+ +.|||| +.++ |+|++.+++++.. +...+
T Consensus 5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~--~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-----~~~~~ 77 (293)
T d1csna_ 5 VHYKVGRRIGEGSFGVIFEGTNLLNN--QQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-----GLHNV 77 (293)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTT--EEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-----TTEEE
T ss_pred CceEEEEEEecCCCeEEEEEEECCCC--CEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeec-----CCccE
Confidence 57899999999999999999976543 489999 3454 4899999998765 77899
Q ss_pred EEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 765 lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+||||| +|+|.++++... ..+++.++..++.|++.||+|||
T Consensus 78 ~vme~~-~~~l~~~~~~~~---~~~~~~~~~~i~~q~~~~l~~lH 118 (293)
T d1csna_ 78 LVIDLL-GPSLEDLLDLCG---RKFSVKTVAMAAKQMLARVQSIH 118 (293)
T ss_dssp EEEECC-CCBHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEec-CCCHHHHHHhhc---cchhhHHHHHHHHHHHHHHHHHH
Confidence 999999 689999987542 45899999999999999999998
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.30 E-value=4.1e-14 Score=135.49 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=56.9
Q ss_pred ccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCCCEEEccccccccccCccccCCCCC
Q 040849 462 LGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 541 (809)
Q Consensus 462 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 541 (809)
+..+++|++|+|++|+|+ .++ .+.++++| +.|++++|+++ .+|..+..+++|+.|++++|+++.. ..+..+++|
T Consensus 44 l~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L-~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L 117 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIE-KIS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHTTTCCEEECSEEEES-CCC-CHHHHTTC-CEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred HhcccccceeECcccCCC-Ccc-cccCCccc-cChhhcccccc-ccccccccccccccccccccccccc--ccccccccc
Confidence 333444444444444443 122 23333343 34444444443 2222222333455555555555432 224455555
Q ss_pred CEEeCcCCccccccc-hhhcCCCCCCEEeCCCCCcccccccc----------cccCCCCCeEE
Q 040849 542 EQLGMNGNFFQGNIP-SSFSSLRGIENLDLSRNNLSGRIPKY----------FENFLFLQNLN 593 (809)
Q Consensus 542 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------~~~l~~L~~l~ 593 (809)
+.|++++|+++.... ..+..+++|+.|++++|++....+.. +..+++|+.||
T Consensus 118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 555555555553321 34555556666666666554433321 44566666654
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=1.4e-12 Score=134.07 Aligned_cols=96 Identities=28% Similarity=0.460 Sum_probs=76.6
Q ss_pred ccccccceeccCCceeEEEEEECCCCceeEEEEe------------------cCCCCcceeeEeeeeeccccCCCceEEE
Q 040849 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------------------RSIRHRNLVKIITSCASVDFQGNDFKAL 765 (809)
Q Consensus 704 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK------------------~~l~H~niv~l~~~~~~~~~~~~~~~~l 765 (809)
+.|++.+.||+|+||+||+|+....+. .|||| +.++|+|+|..++.|.. +++..++
T Consensus 7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~--~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~----~~~~~~i 80 (299)
T d1ckia_ 7 NRYRLGRKIGSGSFGDIYLGTDIAAGE--EVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGA----EGDYNVM 80 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTE--EEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEE----ETTEEEE
T ss_pred CEEEEeEEEeeCCCcEEEEEEECCCCC--EEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEe----cCCEEEE
Confidence 469999999999999999999765444 89999 46777776666665543 2678999
Q ss_pred EEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 766 VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 766 v~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
|||||+ |++.+.+... ...+++.++..++.|+++||+|||
T Consensus 81 vme~~~-~~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH 120 (299)
T d1ckia_ 81 VMELLG-PSLEDLFNFC---SRKFSLKTVLLLADQMISRIEYIH 120 (299)
T ss_dssp EEECCC-CBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcC-Cchhhhhhhc---cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999995 5666665533 246899999999999999999998
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.30 E-value=3.9e-14 Score=135.61 Aligned_cols=126 Identities=29% Similarity=0.312 Sum_probs=71.4
Q ss_pred CcCCCCccEEEcccccCcccCCccccCCCCCcEEeCcCCcCccccCcchhcccCCceEEEccCCcCcccCCCCccCCCCC
Q 040849 438 IGNLTLLITLSFDKNMLEGSIPSSLGKCQNLILLGLSNNNLTGTIPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNL 517 (809)
Q Consensus 438 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L 517 (809)
+..+++|++|+|++|+|+. ++ .+..+++|+.|+|++|+++ .+|......+.+ +.|++++|+++.. +.+..+++|
T Consensus 44 l~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L-~~L~l~~N~i~~l--~~~~~l~~L 117 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-EELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHC-CEEECSEEECCCH--HHHHHHHHS
T ss_pred HhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccc-ccccccccccccc--ccccccccc
Confidence 3344444444444444442 22 3445555555555555554 344333333444 4566666666532 225556677
Q ss_pred CEEEccccccccccC-ccccCCCCCCEEeCcCCccccccchh----------hcCCCCCCEEe
Q 040849 518 GVLDVSENKLSGEIP-NSLGSCVRLEQLGMNGNFFQGNIPSS----------FSSLRGIENLD 569 (809)
Q Consensus 518 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~Ld 569 (809)
+.|++++|+++.... ..+..+++|+.|+|++|++....+.. +..+++|+.||
T Consensus 118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 777777777764322 45677777777777777776544432 56788888887
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=6.6e-12 Score=114.69 Aligned_cols=105 Identities=21% Similarity=0.107 Sum_probs=82.6
Q ss_pred EEEccCCcCcccCCCCccCCCCCCEEEcccc-ccccccCccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCC
Q 040849 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSEN-KLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573 (809)
Q Consensus 495 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 573 (809)
.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+...|.+|.++++|++|||++|
T Consensus 12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 4666666665 34566777888888888766 477666777888888999999999988888888888999999999999
Q ss_pred CcccccccccccCCCCCeEEccCCcccc
Q 040849 574 NLSGRIPKYFENFLFLQNLNLSFNHFEG 601 (809)
Q Consensus 574 ~l~~~~p~~~~~l~~L~~l~ls~N~l~g 601 (809)
+|+...+..|..+ .|++|+|++|+|..
T Consensus 91 ~l~~l~~~~~~~~-~l~~L~L~~Np~~C 117 (156)
T d2ifga3 91 ALESLSWKTVQGL-SLQELVLSGNPLHC 117 (156)
T ss_dssp CCSCCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred CCcccChhhhccc-cccccccCCCcccC
Confidence 9986666666554 68899999998864
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2.3e-12 Score=117.75 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=47.7
Q ss_pred CccccCCCCccEEeCCCC-CCCccCCccccccccCCccccCCCcCcccCCccccCCCcCcEEEcccCCCCCCCcccccCC
Q 040849 92 SPHIGNLSFLRVLDLKNN-SFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSL 170 (809)
Q Consensus 92 ~~~l~~l~~L~~LdLs~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 170 (809)
|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+...|.+|.++++|++|+|++|+++...+..|..
T Consensus 24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~- 102 (156)
T d2ifga3 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG- 102 (156)
T ss_dssp TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-
T ss_pred cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-
Confidence 444555666666666544 355444455555555555555555555555555555555555555555555333333322
Q ss_pred CCCCEEEcccccC
Q 040849 171 SKLRTLAVHYNNL 183 (809)
Q Consensus 171 ~~L~~L~Ls~N~l 183 (809)
.+|++|+|++|.+
T Consensus 103 ~~l~~L~L~~Np~ 115 (156)
T d2ifga3 103 LSLQELVLSGNPL 115 (156)
T ss_dssp CCCCEEECCSSCC
T ss_pred ccccccccCCCcc
Confidence 2455555555544
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=1.1e-09 Score=115.47 Aligned_cols=99 Identities=25% Similarity=0.306 Sum_probs=73.4
Q ss_pred cccccceeccCCceeEEEEEECCCCceeEEEEe-------------------c-----------CCCCcceeeEeeeeec
Q 040849 705 GFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------R-----------SIRHRNLVKIITSCAS 754 (809)
Q Consensus 705 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK-------------------~-----------~l~H~niv~l~~~~~~ 754 (809)
.|++.++||+|+||+||+|+....+ +.|||| + .+.|+|||++++++..
T Consensus 14 rY~i~~~LG~G~fg~Vy~~~~~~~g--~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~ 91 (362)
T d1q8ya_ 14 RYILVRKLGWGHFSTVWLAKDMVNN--THVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 91 (362)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTT--EEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred cEEEEEEEeeCCCeEEEEEEECCCC--CEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence 4899999999999999999965543 489999 1 1247899999998754
Q ss_pred cccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 755 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
.+....+++|+++..+......... .....+++..+..++.||++||+|||
T Consensus 92 ---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~qil~al~~lh 142 (362)
T d1q8ya_ 92 ---KGPNGVHVVMVFEVLGENLLALIKK-YEHRGIPLIYVKQISKQLLLGLDYMH 142 (362)
T ss_dssp ---EETTEEEEEEEECCCCEEHHHHHHH-TTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccceeeeeeeccccccccccccc-ccccCCcHHHHHHHHHHHHHHHHHHh
Confidence 2245667777777665443332211 12356889999999999999999998
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.65 E-value=6.8e-09 Score=98.09 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=59.7
Q ss_pred cccceeccCCceeEEEEEECCCCceeEEEEe--------------------------------------cCCCCcceeeE
Q 040849 707 SLENLIGAGSFGSVYKGILNHDDHETLVAVK--------------------------------------RSIRHRNLVKI 748 (809)
Q Consensus 707 ~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK--------------------------------------~~l~H~niv~l 748 (809)
...++||+|+||+||+|+..++ +.|||| .++.|+++++.
T Consensus 3 ~vg~~IG~G~~g~Vy~a~~~~g---~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~ 79 (191)
T d1zara2 3 AIGKLMGEGKESAVFNCYSEKF---GECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKV 79 (191)
T ss_dssp EEEEEEEECSSEEEEEEEETTT---EEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCE
T ss_pred hhCCEeeeCcceEEEEEECCCC---CEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceE
Confidence 4578999999999999986543 389999 13567777766
Q ss_pred eeeeeccccCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 749 ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 749 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
+++. ..+++|||++++.+.+ +++..+..++.|+++|++|||
T Consensus 80 ~~~~---------~~~lvme~~~~~~~~~-----------l~~~~~~~i~~ql~~~l~~lH 120 (191)
T d1zara2 80 YAWE---------GNAVLMELIDAKELYR-----------VRVENPDEVLDMILEEVAKFY 120 (191)
T ss_dssp EEEE---------TTEEEEECCCCEEGGG-----------CCCSCHHHHHHHHHHHHHHHH
T ss_pred EEec---------CCEEEEEeeccccccc-----------hhhHHHHHHHHHHHHHHHHHh
Confidence 6541 1379999999866543 233346679999999999998
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=4.2e-09 Score=96.42 Aligned_cols=82 Identities=23% Similarity=0.191 Sum_probs=44.7
Q ss_pred cCCCCCCEEEcccccccccc--CccccCCCCCCEEeCcCCccccccchhhcCCCCCCEEeCCCCCccccccc-------c
Q 040849 512 GILKNLGVLDVSENKLSGEI--PNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPK-------Y 582 (809)
Q Consensus 512 ~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~-------~ 582 (809)
..++.|++|||++|+|+... +..+..+++|+.|+|++|.++...+-.+.....|+.|++++|+++..... .
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 34555666666666665432 23455566666666666666644443333444566666666666544332 2
Q ss_pred cccCCCCCeEE
Q 040849 583 FENFLFLQNLN 593 (809)
Q Consensus 583 ~~~l~~L~~l~ 593 (809)
+..+|+|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 44556666554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=5.3e-09 Score=95.66 Aligned_cols=64 Identities=22% Similarity=0.106 Sum_probs=25.5
Q ss_pred CCCcCcEEEcccCCCCCCC--cccccCCCCCCEEEcccccCcccCCccCCCCCCCCEEEcccCccc
Q 040849 145 HCVNLESLRLGFNELVGKV--PRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFV 208 (809)
Q Consensus 145 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 208 (809)
++++|++|+|++|+++... +..+..+++|++|+|++|+++...+-.+....+|+.|++++|.++
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 3444444444444444321 122334444444444444444222212222233444444444443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.50 E-value=2.6e-05 Score=70.70 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=49.0
Q ss_pred CCCCCEEEccccccccccC----ccccCCCCCCEEeCcCCccccc----cchhhcCCCCCCEEeCCCCCcccc-------
Q 040849 514 LKNLGVLDVSENKLSGEIP----NSLGSCVRLEQLGMNGNFFQGN----IPSSFSSLRGIENLDLSRNNLSGR------- 578 (809)
Q Consensus 514 l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~------- 578 (809)
.+.|++|+|++|.+..... ..+...+.|+.|+|++|.++.. +-..+...+.|+.|++++|.+...
T Consensus 43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~ 122 (167)
T d1pgva_ 43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 122 (167)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence 3456666666666653222 2334456677777777776643 223345556777777777765422
Q ss_pred cccccccCCCCCeEEccCCc
Q 040849 579 IPKYFENFLFLQNLNLSFNH 598 (809)
Q Consensus 579 ~p~~~~~l~~L~~l~ls~N~ 598 (809)
+...+...++|+.|+++++.
T Consensus 123 l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 123 MMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhCCCccEeeCcCCC
Confidence 33444556777777776553
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.49 E-value=1.2e-05 Score=72.97 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=29.8
Q ss_pred CCCCccEEeCCCC-CCCcc----CCccccccccCCccccCCCcCcccC----CccccCCCcCcEEEcccCCCC
Q 040849 97 NLSFLRVLDLKNN-SFRNE----IPQEIGYLFRLQFLWLDNNTFGGQI----PDNISHCVNLESLRLGFNELV 160 (809)
Q Consensus 97 ~l~~L~~LdLs~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 160 (809)
+.+.|+.|+|+++ .++.. +-..+...+.|++|+|++|.+.... ...+...+.|++|+|++|.+.
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence 3466777777653 34322 1223344455555555555554211 112233444555555555443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.62 E-value=0.00035 Score=62.96 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=8.7
Q ss_pred ccccCCCCCeEEccCCc
Q 040849 582 YFENFLFLQNLNLSFNH 598 (809)
Q Consensus 582 ~~~~l~~L~~l~ls~N~ 598 (809)
.+...+.|++|+++.++
T Consensus 127 ~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 127 MLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHCSSCCEEECCCSS
T ss_pred HHHhCCCcCEEeCcCCC
Confidence 34445555555555543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.61 E-value=0.00034 Score=63.03 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=65.6
Q ss_pred cCCCCCcEEeCcC-CcCccc----cCcchhcccCCceEEEccCCcCccc----CCCCccCCCCCCEEEccccccccc---
Q 040849 463 GKCQNLILLGLSN-NNLTGT----IPTEVIGLSSLSIYLDLSQNQLNGT----LPSNFGILKNLGVLDVSENKLSGE--- 530 (809)
Q Consensus 463 ~~l~~L~~L~Ls~-N~l~~~----~p~~~~~l~~l~~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~--- 530 (809)
.+.++|+.|+|++ +.++.. +-..+...+.+ +.|++++|.++.. +-..+...+.++.+++++|.++..
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L-~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~ 92 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYV-KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 92 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSC-CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCcc-CeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence 4567788888876 456422 22233345566 6777777776532 122334556777777777776533
Q ss_pred -cCccccCCCCCCEEeC--cCCcccc----ccchhhcCCCCCCEEeCCCCCc
Q 040849 531 -IPNSLGSCVRLEQLGM--NGNFFQG----NIPSSFSSLRGIENLDLSRNNL 575 (809)
Q Consensus 531 -~p~~~~~l~~L~~L~L--s~N~l~~----~~p~~~~~l~~L~~LdLs~N~l 575 (809)
+-..+...++|+.++| ++|.+.. .+...+...+.|+.|+++.++.
T Consensus 93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 2244556667766444 4566653 2444555667777777776654
|
| >d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Type IIIa 3',5"-aminoglycoside phosphotransferase species: Enterococcus faecalis [TaxId: 1351]
Probab=87.36 E-value=0.59 Score=43.95 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=54.4
Q ss_pred HHHHhcccccccceeccCCceeEEEEEECCCCceeEEEEec--------------------CC-CCcceeeEeeeeeccc
Q 040849 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR--------------------SI-RHRNLVKIITSCASVD 756 (809)
Q Consensus 698 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~~~vavK~--------------------~l-~H~niv~l~~~~~~~~ 756 (809)
++....+.|...+..+.++-+.||+.+..+ . .+.+|. .+ .|--+-+++.++..
T Consensus 8 ~l~~~~~~~~~~~~~~G~s~~~v~rv~~~~--~--~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~-- 81 (263)
T d1j7la_ 8 ELKKLIEKYRCVKDTEGMSPAKVYKLVGEN--E--NLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-- 81 (263)
T ss_dssp HHHHHHTTSEEEECSCCCSSSEEEEEECSS--C--EEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE--
T ss_pred HHHHhhhceEEEEcCCCCCCCcEEEEEeCC--C--eEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEec--
Confidence 444445566655554444457899987322 2 566770 01 12113344555433
Q ss_pred cCCCceEEEEEeccCCCChhhhhcCCCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 040849 757 FQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809 (809)
Q Consensus 757 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~i~~~ia~gl~yLH 809 (809)
++..++||||++|.++.+..... -. ...++.++++.++.||
T Consensus 82 ---~~~~~lv~~~l~G~~~~~~~~~~------~~---~~~~~~~l~~~l~~lH 122 (263)
T d1j7la_ 82 ---DGWSNLLMSEADGVLCSEEYEDE------QS---PEKIIELYAECIRLFH 122 (263)
T ss_dssp ---TTEEEEEEECCSSEEHHHHTTTC------SC---HHHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEEeccccccccccccc------cc---HHHHHHHHHHHHHHHh
Confidence 56789999999999887665321 12 3335677777777666
|