Citrus Sinensis ID: 040856

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPLEDNKHMAFTSA
ccHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccEEcccccccccccc
cHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcHHcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccEEEEcc
MEEAWQFTSKHLKQClnsnkddeDLNEQARRALElplhwrmprleARWFINVYEKRKDKNHALLELAKLDFNILQATYQEELKDISgwwkdkglgekLSFARSRLVTSFfwgmgmvfepqfaYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEylesnpdviQWSSRIFRLLddlgtssdeiqrgdvskSIQCYMHETNLIRQMWKKVMMDVSrasnnkdsplsqitNEFILNLVRVSHFMYlhgdghgvqnqETMDEAFALlfqpiplednkhmaftsa
MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRAlelplhwrmprlEARWFINVYEKRKDKNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLgtssdeiqrgdvsksiqCYMHETNLIRQMWKKVMMDVSRAsnnkdsplsqITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFqpiplednKHMAFTSA
MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPLEDNKHMAFTSA
*******************************ALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNLIRQMWKKVMMDV************QITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIP************
MEEAWQFTSKHLK**************QARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDL*************KSIQCYMHETNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPLEDN********
*********KHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPLEDNKHMAFTSA
MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPLEDNKHMAFTSA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPLEDNKHMAFTSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
Q8L5K3606 (R)-limonene synthase 1 O N/A no 0.987 0.636 0.713 1e-174
Q93X23597 Myrcene synthase, chlorop N/A no 0.953 0.624 0.538 1e-119
Q6PWU2590 (-)-alpha-terpineol synth no no 0.951 0.630 0.506 1e-114
B3TPQ7592 Alpha-terpineol synthase, N/A no 0.948 0.626 0.519 1e-110
Q8L5K4600 Gamma-terpinene synthase, N/A no 0.959 0.625 0.502 1e-108
P0DI77600 1,8-cineole synthase 2, c yes no 0.923 0.601 0.469 3e-98
P0DI76600 1,8-cineole synthase 1, c yes no 0.923 0.601 0.469 3e-98
A7IZZ2615 (+)-alpha-pinene synthase N/A no 0.969 0.616 0.478 3e-97
Q2XSC4538 Exo-alpha-bergamotene syn N/A no 0.959 0.697 0.459 4e-97
Q2XSC6602 (R)-limonene synthase OS= N/A no 0.964 0.626 0.469 9e-97
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function desciption
 Score =  610 bits (1573), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 289/405 (71%), Positives = 341/405 (84%), Gaps = 19/405 (4%)

Query: 1   MEEAWQFTSKHLKQCLNSNKDDEDL--NEQARRALELPLHWRMPRLEARWFINVYEKRKD 58
           MEEAWQFTSKHLK+ + S   +ED+   EQA+RALELPLHW++P LEARWFI++YE+R+D
Sbjct: 202 MEEAWQFTSKHLKEVMISKNMEEDVFVAEQAKRALELPLHWKVPMLEARWFIHIYERRED 261

Query: 59  KNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFE 118
           KNH LLELAK++FN LQA YQEELK+ISGWWKD GLGEKLSFAR+RLV SF W MG+ FE
Sbjct: 262 KNHLLLELAKMEFNTLQAIYQEELKEISGWWKDTGLGEKLSFARNRLVASFLWSMGIAFE 321

Query: 119 PQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICF 178
           PQFAY RRVLTI++ALITVIDDIYD+YGTLDELE+FT+AVERWDIN+A+K LP YMK+CF
Sbjct: 322 PQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVERWDINYALKHLPGYMKMCF 381

Query: 179 FALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAA 238
            ALYNFV+E AY +LKQQD D LL IKN+WLGL+QA+LVEAKWYH+KY P LEEYL+N  
Sbjct: 382 LALYNFVNEFAYYVLKQQDFDLLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGL 441

Query: 239 LSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDV 298
           +SI GPLI   +YLS T+PI++KELE+LESNPD++ WSS+IFRL DDLGTSSDEIQRGDV
Sbjct: 442 VSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDV 501

Query: 299 SKSIQCYMHET------------NLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLV 346
            KSIQCYMHET            +++RQMWKK    V+  + +KDSPL+  T EF+LNLV
Sbjct: 502 PKSIQCYMHETGASEEVARQHIKDMMRQMWKK----VNAYTADKDSPLTGTTTEFLLNLV 557

Query: 347 RVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPLEDNKHMAFTSA 391
           R+SHFMYLHGDGHGVQNQET+D  F LLFQPIPLED KHMAFT++
Sbjct: 558 RMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLED-KHMAFTAS 601

Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function description
>sp|P0DI77|CIN2_ARATH 1,8-cineole synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS23 PE=1 SV=1 Back     alignment and function description
>sp|P0DI76|CIN1_ARATH 1,8-cineole synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1 Back     alignment and function description
>sp|Q2XSC6|LALIM_LAVAN (R)-limonene synthase OS=Lavandula angustifolia PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
322424201 607 limonene synthase [Murraya paniculata] 1.0 0.644 0.880 0.0
41017756 606 RecName: Full=(R)-limonene synthase 1; A 0.987 0.636 0.713 1e-172
21435708 606 (+)-limonene synthase 2 [Citrus limon] 0.987 0.636 0.713 1e-171
49659437 608 d-limonene synthase [Citrus unshiu] 0.987 0.634 0.712 1e-169
209446863 607 limonene synthase [Poncirus trifoliata] 0.987 0.635 0.704 1e-165
394556815 612 geraniol synthase [Citrus jambhiri] 0.984 0.629 0.707 1e-164
49659435 606 d-limonene synthase [Citrus unshiu] 0.987 0.636 0.696 1e-163
225465905 590 PREDICTED: myrcene synthase, chloroplast 0.953 0.632 0.553 1e-120
359495020 849 PREDICTED: myrcene synthase, chloroplast 0.953 0.439 0.548 1e-118
75249335 597 RecName: Full=Myrcene synthase, chloropl 0.953 0.624 0.538 1e-117
>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata] Back     alignment and taxonomy information
 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/403 (88%), Positives = 370/403 (91%), Gaps = 12/403 (2%)

Query: 1   MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKN 60
           MEEAWQFTSKHLK+CLNSNKDDEDLNEQARRAL+LPLHWR+PRLEARWFI+VYEKRKD+N
Sbjct: 205 MEEAWQFTSKHLKECLNSNKDDEDLNEQARRALQLPLHWRLPRLEARWFIDVYEKRKDRN 264

Query: 61  HALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQ 120
           HALLELAKLDFNILQATYQEELKDIS WWKDKG GEKLSFARSRLVTSF  G+GM FEPQ
Sbjct: 265 HALLELAKLDFNILQATYQEELKDISRWWKDKGPGEKLSFARSRLVTSFVGGLGMAFEPQ 324

Query: 121 FAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFA 180
           FAYSRRV+TIT ALITVIDDIYD+YGTLDELELFT AVERWDINFAIKQLPDYMKICFFA
Sbjct: 325 FAYSRRVVTITAALITVIDDIYDVYGTLDELELFTYAVERWDINFAIKQLPDYMKICFFA 384

Query: 181 LYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240
           LYNFVSEVA  ILKQQDSDQ L IKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNA LS
Sbjct: 385 LYNFVSEVADYILKQQDSDQFLAIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAELS 444

Query: 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSK 300
           IAGPLITITAYLSA +PI+EKELEYLESNP++IQWSSRIFRLLDDLGTSSDEIQRGDVSK
Sbjct: 445 IAGPLITITAYLSAANPIIEKELEYLESNPELIQWSSRIFRLLDDLGTSSDEIQRGDVSK 504

Query: 301 SIQCYMHET------------NLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRV 348
           SI CYMHET            NLIRQ WKKVMMDVSRASNNKDSPLSQ  NEFILN++RV
Sbjct: 505 SIHCYMHETGASEETAREHIKNLIRQTWKKVMMDVSRASNNKDSPLSQTANEFILNMLRV 564

Query: 349 SHFMYLHGDGHGVQNQETMDEAFALLFQPIPLEDNKHMAFTSA 391
           SHF+YLHGDGHG QNQETMDEAFALLFQPIPLEDNKH A T A
Sbjct: 565 SHFVYLHGDGHGAQNQETMDEAFALLFQPIPLEDNKHRALTLA 607

Source: Murraya paniculata

Species: Murraya paniculata

Genus: Murraya

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon] Back     alignment and taxonomy information
>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata] Back     alignment and taxonomy information
>gi|394556815|dbj|BAM29049.1| geraniol synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|225465905|ref|XP_002266808.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495020|ref|XP_002267019.2| PREDICTED: myrcene synthase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|75249335|sp|Q93X23.1|MYRS_QUEIL RecName: Full=Myrcene synthase, chloroplastic; Flags: Precursor gi|14331015|emb|CAC41012.1| putative chloroplast terpene synthase [Quercus ilex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.969 0.640 0.516 1.6e-102
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 0.959 0.625 0.502 2.7e-100
UNIPROTKB|J7LQ09542 J7LQ09 "Trans-alpha-bergamoten 0.959 0.691 0.485 6.6e-97
UNIPROTKB|J7LH11546 J7LH11 "(+)-epi-alpha-bisabolo 0.953 0.683 0.470 5e-92
TAIR|locus:2829283600 TPS-CIN ""terpene synthase-lik 0.923 0.601 0.469 7.3e-91
TAIR|locus:2086014600 TPS-CIN ""terpene synthase-lik 0.923 0.601 0.469 7.3e-91
TAIR|locus:2086004598 AT3G25810 [Arabidopsis thalian 0.953 0.623 0.452 4.6e-89
UNIPROTKB|Q5UB07580 TPS4 "Tricyclene synthase TPS4 0.959 0.646 0.479 8.6e-88
UNIPROTKB|E2E2P0594 TPS2 "Gamma-terpinene synthase 0.948 0.624 0.433 1.8e-87
UNIPROTKB|Q8GUE4603 GerS "Geraniol synthase, chlor 0.982 0.636 0.441 2.6e-86
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 202/391 (51%), Positives = 272/391 (69%)

Query:     1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKN 60
             ++EA  FT +HL+  L  N D  +L      ALELPLHWR+ RLEARW+I+ YE+ +D N
Sbjct:   206 LDEAKAFTYRHLRG-LKGNIDS-NLKGLVEHALELPLHWRVLRLEARWYIDTYERMEDMN 263

Query:    61 HALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQ 120
               LLELAKLDFNI+Q  YQ +++ +SGWWKD GLG+KL FAR RL+  F W +G+ FEPQ
Sbjct:   264 PLLLELAKLDFNIVQNVYQGQVRKMSGWWKDLGLGQKLGFARDRLMEGFLWTIGVKFEPQ 323

Query:   121 FAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFA 180
             FA  R VLT    LIT IDD+YD+YG+L+ELELFT AV+RWD N A+++LP+YMKICF A
Sbjct:   324 FAQCREVLTKINQLITTIDDVYDVYGSLEELELFTKAVDRWDTN-AMEELPEYMKICFLA 382

Query:   181 LYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240
             LYN V+E+AYD LK+Q  D +  ++ SW  L +A+LVEA+WY++ Y PTL+EYL NA +S
Sbjct:   383 LYNTVNEIAYDTLKEQGVDVIPYLQKSWADLCKAYLVEARWYYSGYTPTLDEYLNNAWIS 442

Query:   241 IAGPLITITAYLSATDPIVEKEL-EYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
             IAGP+I + AY+S    I ++ L + + S   ++QWSS I RL DDL TS+DE++RGDV 
Sbjct:   443 IAGPVILVHAYVSMIQMITKEALLDCVGSYESIMQWSSMILRLADDLATSTDELERGDVP 502

Query:   300 KSIQCYMHETN----LIRQMWKKVMMDVSRASNNKD---SPLSQITNEFILNLVRVSHFM 352
             KSIQCYMHE      + R+  +  + D+ +  N KD   SPL Q      +NL R++  M
Sbjct:   503 KSIQCYMHENTASEVVAREQMRARISDIWKKMN-KDVALSPLPQPFKAAAVNLARMAQCM 561

Query:   353 YLHGDGHGVQNQETMDEAFALLFQPIPLEDN 383
             Y HGDGHG  ++E+ D   +L+ +PI L ++
Sbjct:   562 YQHGDGHGNPHRESKDHILSLVVEPIQLMES 592
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
GO:0043693 "monoterpene biosynthetic process" evidence=IDA
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2P0 TPS2 "Gamma-terpinene synthase, chloroplastic" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L5K3RLC1_CITLI4, ., 2, ., 3, ., 2, 00.71350.98720.6369N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-162
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 4e-98
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 2e-96
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 9e-40
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 5e-31
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 6e-13
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  466 bits (1201), Expect = e-162
 Identities = 187/390 (47%), Positives = 250/390 (64%), Gaps = 18/390 (4%)

Query: 1   MEEAWQFTSKHLKQCLNSNKD-DEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDK 59
           ++EA  FT+KHL++ L SN   D DL+ +   ALE+PLH  +PRLEARW+I  YE+  D 
Sbjct: 158 LDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDH 217

Query: 60  NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
           N  LLELAKLDFNILQA +QEELK +S WWKD  L  KL FAR RLV  +FW  G  FEP
Sbjct: 218 NETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEP 277

Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
           Q++ +R  L  T+ALITVIDD YD+YGTL+ELELFT AVERWDI+ AI QLP+YMKI F 
Sbjct: 278 QYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDIS-AIDQLPEYMKIVFK 336

Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
           AL N V+E+  ++LK+  S  +  +K +W  L++A+LVEAKW H  Y PT EEY++NA +
Sbjct: 337 ALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALV 396

Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
           SI    + +T++L   D + E+  E+LES P +++ SS I RL++D+ T  DE++RGDV+
Sbjct: 397 SIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVA 456

Query: 300 KSIQCYMHETN------------LIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
            SI+CYM E              +I   WK++  +  +      S + +   +  LNL R
Sbjct: 457 SSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLK----PSSDVPRPIKQRFLNLAR 512

Query: 348 VSHFMYLHGDGHGVQNQETMDEAFALLFQP 377
           V    Y  GDG      E  D   +LLF+P
Sbjct: 513 VIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
PLN02279784 ent-kaur-16-ene synthase 100.0
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.97
PLN0215096 terpene synthase/cyclase family protein 99.94
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.75
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.08
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 96.81
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 92.53
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information 
Probab=100.00  E-value=5.8e-106  Score=856.81  Aligned_cols=375  Identities=27%  Similarity=0.429  Sum_probs=354.2

Q ss_pred             ChhHHHHHHHHHHHHhhCC-----CCCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhcccc------------ccHHH
Q 040856            1 MEEAWQFTSKHLKQCLNSN-----KDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKD------------KNHAL   63 (391)
Q Consensus         1 L~eA~~ft~~~L~~~~~~~-----~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~------------~n~~l   63 (391)
                      ||||+.||++||++++.++     ..+++|++||+|||++|||++|||||||+||++|++++.            +|++|
T Consensus       376 LdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~l  455 (784)
T PLN02279        376 LEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLANRRSIENYAVDDTRILKTSYRCSNICNQDF  455 (784)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHHHHHHHHHHhccccchhccccccccccccHHH
Confidence            7999999999999988531     125889999999999999999999999999999999885            89999


Q ss_pred             HHHHhhhhHHHhhhcHHHHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhhc
Q 040856           64 LELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYD  143 (391)
Q Consensus        64 LelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~D  143 (391)
                      |||||+|||+||++||+||++++|||+++|| +++||||||++|||||++|++|||++|.+|++|||+++|++++||+||
T Consensus       456 LeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD  534 (784)
T PLN02279        456 LKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFD  534 (784)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999 799999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 040856          144 IYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYH  223 (391)
Q Consensus       144 ~~gt~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~  223 (391)
                      +|||.|||+.||+||+|||++..++.+|+|||+||.+|+++++|++.++.+.||+++++|++++|++++++|++||+|+.
T Consensus       535 ~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~  614 (784)
T PLN02279        535 VGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSS  614 (784)
T ss_pred             ccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998834589999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHhhccccchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHH
Q 040856          224 NKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQ  303 (391)
Q Consensus       224 ~~~iPs~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~  303 (391)
                      +||+||+||||+|+.+|+|.+++++.+++++|+.+|+++++| .++|+|+++++.|+||+|||+||++|+++||+ |+|+
T Consensus       615 ~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~-~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~  692 (784)
T PLN02279        615 NKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDS-PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVS  692 (784)
T ss_pred             cCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhC-cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceeh
Confidence            999999999999999999998888888888999999999999 58999999999999999999999999999998 9999


Q ss_pred             HHHhhc--ch------------HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHH
Q 040856          304 CYMHET--NL------------IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDE  369 (391)
Q Consensus       304 ~yM~e~--g~------------ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~  369 (391)
                      |||+|+  |+            |+++||+||++  ++++. +++||++|++++||++|++++||++|||||.+  +||++
T Consensus       693 cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~--~l~~~-~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~--~~k~~  767 (784)
T PLN02279        693 LHMIHGNGNSTEEEAIESMKGLIESQRRELLRL--VLQEK-GSNVPRECKDLFWKMSKVLHLFYRKDDGFTSN--DMMSL  767 (784)
T ss_pred             hhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HhccC-CCCCCHHHHHHHHHHHHhhhhheeCCCCCChH--HHHHH
Confidence            999997  44            99999999999  99741 22799999999999999999999999999963  69999


Q ss_pred             HHhhccccccCCCC
Q 040856          370 AFALLFQPIPLEDN  383 (391)
Q Consensus       370 i~~ll~~pv~~~~~  383 (391)
                      |++||++|||+..+
T Consensus       768 i~~ll~ePi~l~~~  781 (784)
T PLN02279        768 VKSVIYEPVSLQEE  781 (784)
T ss_pred             HHHHhccCCcCCcc
Confidence            99999999998654

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-91
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 6e-90
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 2e-89
2j5c_A569 Rational Conversion Of Substrate And Product Specif 5e-86
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 3e-63
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-58
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-58
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-58
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 3e-58
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 3e-58
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 4e-58
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-58
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-57
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 7e-57
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 7e-57
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 2e-55
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 9e-50
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 5e-08
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  333 bits (853), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/394 (44%), Positives = 242/394 (61%), Gaps = 20/394 (5%)
Query: 1   MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKN 60
           ++EA  F   HLK+ L+  K  ++L EQ   ALELPLH R  RLEA W I  Y K++D N
Sbjct: 168 LDEARVFAISHLKE-LSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDAN 226
Query: 61  HALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQ 120
             LLELA LD+N++Q+ YQ +L++ S WW+  GL  KL FAR RL+ SF+W +G+ FEPQ
Sbjct: 227 QVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQ 286
Query: 121 FAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFA 180
           ++  R  +    + +T+IDDIYD+YGTLDELELFT+AVERWD+N AI  LPDYMK+CF A
Sbjct: 287 YSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVN-AINDLPDYMKLCFLA 345
Query: 181 LYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240
           LYN ++E+AYD LK +  + L  +  +W  L  AFL EAKW +NK  PT ++Y  NA  S
Sbjct: 346 LYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKS 405
Query: 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSK 300
            +GPL  I AY +    I ++E+E L+   D+I   S IFRL +DL ++S EI RG+ + 
Sbjct: 406 SSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETAN 465
Query: 301 SIQCYMHET------------NLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRV 348
           S+ CYM               NLI + WKK  M+  +      S  ++   E  +NL R 
Sbjct: 466 SVSCYMRTKGISEELATESVMNLIDETWKK--MNKEKLGG---SLFAKPFVETAINLARQ 520
Query: 349 SHFMYLHGDGHGVQNQETMDEAFALLFQPI-PLE 381
           SH  Y +GD H   ++ T     +++ +PI P E
Sbjct: 521 SHCTYHNGDAHTSPDELTRKRVLSVITEPILPFE 554
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-117
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-113
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-113
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-111
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-111
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-110
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-108
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-104
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-104
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-69
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 3e-27
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-24
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 1e-09
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 2e-06
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  351 bits (902), Expect = e-117
 Identities = 130/392 (33%), Positives = 212/392 (54%), Gaps = 20/392 (5%)

Query: 1   MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKN 60
           ++EA  FT+ HL   + S   D  L+E+   AL+  +   +PR+EAR +++VY+  +  N
Sbjct: 171 LDEAISFTTHHLSLAVASL--DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHN 228

Query: 61  HALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQ 120
            ALLE AK+DFN+LQ  +++EL +I  WWKD     KL +AR R+V  +FW  G+ FEPQ
Sbjct: 229 KALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQ 288

Query: 121 FAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFA 180
           ++  R++LT  +A+ +++DD YD Y T +EL  +TNA+ERWD    I ++P+YMK  + A
Sbjct: 289 YSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWD-IKCIDEIPEYMKPSYKA 347

Query: 181 LYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240
           L +   E+   + +     ++   KN+ + L Q++LVEAKW    Y P+ EE+  NA  +
Sbjct: 348 LLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT 407

Query: 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSK 300
               ++ IT+++   D +  +  ++  S+P +IQ S+ I R +DD+     + +R D   
Sbjct: 408 CGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCS 467

Query: 301 SIQCYMHETN------------LIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRV 348
           +I+CYM E               +   WK +  +       K + +        LNL RV
Sbjct: 468 AIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFL-----KPTEMPTEVLNRSLNLARV 522

Query: 349 SHFMYLHGDGHGVQNQETMDEAFALLFQPIPL 380
              +Y  GDG+    +       +LL +PI L
Sbjct: 523 MDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.96
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.64
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=8.8e-116  Score=905.04  Aligned_cols=372  Identities=35%  Similarity=0.631  Sum_probs=351.9

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhccccccHHHHHHHhhhhHHHhhhcHH
Q 040856            1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQE   80 (391)
Q Consensus         1 L~eA~~ft~~~L~~~~~~~~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~   80 (391)
                      ||||++||++||++++. .+ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus       171 LdeA~~fs~~~L~~~~~-~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~  248 (554)
T 3g4d_A          171 LDEAISFTTHHLSLAVA-SL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRK  248 (554)
T ss_dssp             HHHHHHHHHHHHHHHST-TC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-cc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHH
Confidence            79999999999999985 45 48899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHhhh
Q 040856           81 ELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVER  160 (391)
Q Consensus        81 El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~D~~gt~eel~~~~~ai~r  160 (391)
                      ||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|
T Consensus       249 El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~R  328 (554)
T 3g4d_A          249 ELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIER  328 (554)
T ss_dssp             HHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHh
Confidence            99999999999999889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhcccc
Q 040856          161 WDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS  240 (391)
Q Consensus       161 Wd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s  240 (391)
                      ||++ ++++||+|||+||.+|+++++|++.++.+.+|.++++|++++|+++++||++||+|+.+||+||+||||+||.+|
T Consensus       329 WD~~-~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vS  407 (554)
T 3g4d_A          329 WDIK-CIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT  407 (554)
T ss_dssp             CCGG-GGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGG
T ss_pred             cCcc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhcccee
Confidence            9999 999999999999999999999999999988888999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHHHhhcch---------
Q 040856          241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNL---------  311 (391)
Q Consensus       241 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~---------  311 (391)
                      +|++++++++++++|+.+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+         
T Consensus       408 sg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i  487 (554)
T 3g4d_A          408 CGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVF  487 (554)
T ss_dssp             SCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHH
T ss_pred             ehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999999999999889999999999999999999999999999999999999999997         


Q ss_pred             ---HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhccccccC
Q 040856          312 ---IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPL  380 (391)
Q Consensus       312 ---ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pv~~  380 (391)
                         |+++||+||+|  ++++  + ++|++|+++++|+||+++++|++|||||.|+.+||++|++||++|||+
T Consensus       488 ~~~Ie~~wK~lN~e--~l~~--~-~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          488 NKHVESAWKDLNQE--FLKP--T-EMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHHH--HSSS--C-SSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHH--HhcC--C-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence               99999999999  9997  7 899999999999999999999999999998788999999999999985
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 391
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-117
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-112
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 3e-35
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 7e-25
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 3e-18
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 8e-15
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  342 bits (878), Expect = e-117
 Identities = 145/332 (43%), Positives = 201/332 (60%), Gaps = 19/332 (5%)

Query: 60  NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
           N  + ELAKL+FNI+QAT+Q+ELKD+S WW      EKL F R RLV SFFW +GM    
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
           Q  Y R++    + L TVIDDIYD+YGTLDELELFT+  +RWD   +I +LP YM++C++
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLCYW 120

Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
            ++N++S+ AYDILK+     L  ++ S + L++A+  EAKWYH+ Y P+L+EYL  A +
Sbjct: 121 GVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 180

Query: 240 SIAGPLITITAYLSATDPIVEKE-LEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDV 298
           S+A P I    Y +  +   +   ++ L    D++  +  I RL DDLGTS  E+ RGDV
Sbjct: 181 SVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV 240

Query: 299 SKSIQCYMHETN------------LIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLV 346
            K+IQCYM ETN            LIR+ WK +   +         P          N+ 
Sbjct: 241 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAI-----AAGYPFPDGMVAGAANIG 295

Query: 347 RVSHFMYLHGDGHGVQNQETMDEAFALLFQPI 378
           RV+ F+YLHGDG GVQ+ +T +    LLF+P 
Sbjct: 296 RVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.94
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.23
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=4.1e-100  Score=744.67  Aligned_cols=315  Identities=46%  Similarity=0.801  Sum_probs=294.1

Q ss_pred             ccHHHHHHHhhhhHHHhhhcHHHHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHh
Q 040856           59 KNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVI  138 (391)
Q Consensus        59 ~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~i  138 (391)
                      +|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|++|||++++++++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999999999977899999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Q 040856          139 DDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVE  218 (391)
Q Consensus       139 DD~~D~~gt~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~E  218 (391)
                      ||+||+|||.||++.||+||+|||++ +++.+|+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++|
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~-~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~E  159 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHE  159 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSS-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCc-ccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCChHHHHhhccccchhhHHHHHHHhhcCCCCc-hHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCC
Q 040856          219 AKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIV-EKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGD  297 (391)
Q Consensus       219 A~W~~~~~iPs~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~-~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~  297 (391)
                      |+|+++||+||+||||+||.+|+|++++++++++++|+..+ +++++|+.++|++++++++|+||+|||+||++|++||+
T Consensus       160 akW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~  239 (328)
T d1n1ba2         160 AKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGD  239 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------C
T ss_pred             HHHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCC
Confidence            99999999999999999999999999999999999998765 55799999999999999999999999999999999999


Q ss_pred             CcchHHHHHhhcch------------HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchh
Q 040856          298 VSKSIQCYMHETNL------------IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQE  365 (391)
Q Consensus       298 ~~n~V~~yM~e~g~------------ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~  365 (391)
                      ++|+|+|||+|+|+            |+++||+||++  ++++  + ++|++|+++++|+||+++++|++|||||+|+..
T Consensus       240 ~~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e--~l~~--~-~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~  314 (328)
T d1n1ba2         240 VPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTA--IAAG--Y-PFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSK  314 (328)
T ss_dssp             CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHTC--C-SSCHHHHHHHHHHHHHHHHHTTTSCCC----CH
T ss_pred             cchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH--HcCC--C-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHH
Confidence            99999999999998            99999999999  9987  7 899999999999999999999999999998778


Q ss_pred             HHHHHHhhcccccc
Q 040856          366 TMDEAFALLFQPIP  379 (391)
Q Consensus       366 ~k~~i~~ll~~pv~  379 (391)
                      ||++|.+||++||.
T Consensus       315 ~k~~I~~ll~ePvs  328 (328)
T d1n1ba2         315 TYEHIAGLLFEPYA  328 (328)
T ss_dssp             HHHHHHHHHTSCCC
T ss_pred             HHHHHHHHhccCCC
Confidence            99999999999983
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure