Citrus Sinensis ID: 040887

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MEEVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEKSMK
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccHHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHcccccHHHHHHHHcccHHHHHHHcccccHHHHHHcccccHHHccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MEEVLDPAYFEAAIrgniddflfsdipkqdLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFlinktnnqgdtplhCAARAGKLNTATALVDFakhipstsqapVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSyflsnptlaiddtikTNIINSLVAIAYFLVsldpklscckniedksplSLAIEMGNTDVLEYILRSlpsgiswssgksplqvATKKRNLGVCYLLEVNGYsalkknketlYPIHLACKNGHANVMVELLkewrcpslfvtdngcniLHFAAKNGHADMVKAIIeipgtnmtmDEVVNkmdedgntplHLAALHGHSQVVYALLRygrsnpdlknkqGMTAYKMALREYYMQTSIAEKQEKSMK
Flexible Loop (DISEMBL)
MEEVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPsgiswssgksPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRygrsnpdlknkQGMTAYKMALREYYMQTsiaekqeksmk
Low Complexity Region (SEG)
MEEVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEKSMK
Disordered region (IsUnstruct)
*****DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS********GMTAYKMALREYYM*************
Disordered Region (DISOPRED)
MEEVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIA*KQE****
Disordered Region (DISEMBL)
MEEVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEKSMK
Disordered Region (DISPRO)
****LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEKSMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	no	0.888	0.186	0.247	4e-17
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.888	0.187	0.247	1e-16
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.819	0.164	0.271	1e-16
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.809	0.072	0.277	2e-16
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.878	0.088	0.267	3e-15
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.878	0.087	0.267	6e-15
Q6RI86	1125	Transient receptor potent	no	no	0.781	0.273	0.287	9e-14
O75762	1119	Transient receptor potent	no	no	0.819	0.288	0.272	3e-13
Q8BLA8	1125	Transient receptor potent	no	no	0.784	0.274	0.275	2e-12
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.469	0.353	0.267	3e-12

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 89.4 bits (220), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 173/396 (43%), Gaps = 46/396 (11%)

Query: 8   AYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF 67
           ++  AA  GN+D  L       D++   +    +G + LH+A+K GH ++  ++  +   
Sbjct: 15  SFLRAARSGNLDKALDHLRNGVDINTCNQ----NGLNGLHLASKEGHVKMVVELL-HKEI 69

Query: 68  LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQ---APVDLLRMEN------- 117
           ++  T  +G+T LH AA AG+      LV++  ++ + SQ    P+ +   EN       
Sbjct: 70  ILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKF 129

Query: 118 -----AMGNTALHEALFMLG-RVNVWRTSIAGSSLTMAHSYFLSNPTLAI----DDTIKT 167
                A  N A  +    L   +     ++    +       +  P L I    DDT   
Sbjct: 130 LLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDT--- 186

Query: 168 NIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL-RSLPSGISWSS 226
                    A  L+  DP           +PL +A    N +V + +L R      +  +
Sbjct: 187 -------RTAAVLLQNDPNPDVLSKT-GFTPLHIAAHYENLNVAQLLLNRGASVNFTPQN 238

Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           G +PL +A+++ N+ +  LL   G     K K+ L P+H A +NGH  +  E+L +   P
Sbjct: 239 GITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRIS-EILLDHGAP 297

Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
               T NG + +H AA+  H D V+ +++        D  ++ +  D  TPLH+AA  GH
Sbjct: 298 IQAKTKNGLSPIHMAAQGDHLDCVRLLLQ-------YDAEIDDITLDHLTPLHVAAHCGH 350

Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
            +V   LL  G + P+ +   G T   +A ++ +++
Sbjct: 351 HRVAKVLLDKG-AKPNSRALNGFTPLHIACKKNHVR 385

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 174/396 (43%), Gaps = 46/396 (11%)

Query: 8   AYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF 67
           ++  AA  GN+D  L       D++   +    +G + LH+A+K GH ++  ++  +   
Sbjct: 11  SFLRAARSGNLDKALDHLRNGVDINTCNQ----NGLNGLHLASKEGHVKMVVELL-HKEI 65

Query: 68  LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQ---APVDLLRMEN------- 117
           ++  T  +G+T LH AA AG+      LV++  ++ + SQ    P+ +   EN       
Sbjct: 66  ILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKF 125

Query: 118 -----AMGNTALHEALFMLG-RVNVWRTSIAGSSLTMAHSYFLSNPTLAI----DDTIKT 167
                A  N A  +    L   +     ++    +       +  P L I    DDT   
Sbjct: 126 LLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDT--- 182

Query: 168 NIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL-RSLPSGISWSS 226
                    A  L+  DP           +PL +A    N +V + +L R      +  +
Sbjct: 183 -------RTAAVLLQNDPNPDVLSKT-GFTPLHIAAHYENLNVAQLLLNRGASVNFTPQN 234

Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           G +PL +A+++ N+ +  LL   G     + K+ L P+H A +NGH  +  E+L +   P
Sbjct: 235 GITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRIS-EILLDHGAP 293

Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
               T NG + +H AA+  H D V+ +++    N  +D++      D  TPLH+AA  GH
Sbjct: 294 IQAKTKNGLSPIHMAAQGDHLDCVRLLLQY---NAEIDDIT----LDHLTPLHVAAHCGH 346

Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
            +V   LL  G + P+ +   G T   +A ++ +++
Sbjct: 347 HRVAKVLLDKG-AKPNSRALNGFTPLHIACKKNHIR 381

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 165/361 (45%), Gaps = 38/361 (10%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
           +G + LH+A+K GH E+ +++ Q     ++    +G+T LH A+ AG+      LV    
Sbjct: 56  NGLNALHLASKEGHVEVVSELLQREAN-VDAATKKGNTALHIASLAGQAEVVKVLVTNGA 114

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGS--------SLTMAHSY 152
           ++ + SQ     L M  A     L    F+L   N    S+A          +L   H  
Sbjct: 115 NVNAQSQNGFTPLYM--AAQENHLEVVRFLLD--NGASQSLATEDGFTPLAVALQQGHDQ 170

Query: 153 FLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCC-------KNIEDKS---PLSLA 202
            +S   L +++  K  +   L A+       D K +          ++E KS   PL +A
Sbjct: 171 VVS---LLLENDTKGKV--RLPALHIAARKDDTKAAALLLQNDTNADVESKSGFTPLHIA 225

Query: 203 IEMGNTDVLEYIL-RSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETL 261
              GN +V   +L R+     +  +  +PL VA+K+ N  +  LL   G     K ++ L
Sbjct: 226 AHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGL 285

Query: 262 YPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNM 321
            P+H   ++GH  V VE+L +   P L  T NG + LH A +  H + V+ +++    N+
Sbjct: 286 TPLHCGARSGHEQV-VEMLLDRSAPILSKTKNGLSPLHMATQGDHLNCVQLLLQ---HNV 341

Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYM 381
            +D+V N    D  T LH+AA  GH +V   LL   +++P+ K   G T   +A ++  +
Sbjct: 342 PVDDVTN----DYLTALHVAAHCGHYKVAKVLLDK-KASPNAKALNGFTPLHIACKKNRI 396

Query: 382 Q 382
           +
Sbjct: 397 R 397

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 163/357 (45%), Gaps = 38/357 (10%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
           +G + LH+A+K GH E+ +++ Q     ++    +G+T LH A+ AG+      LV    
Sbjct: 73  NGLNALHLASKEGHVEVVSELLQRE-ANVDAATKKGNTALHIASLAGQAEVVKVLVTNGA 131

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGS--------SLTMAHSY 152
           ++ + SQ     L M  A     L    F+L   N    S+A          +L   H  
Sbjct: 132 NVNAQSQNGFTPLYM--AAQENHLEVVKFLLD--NGASQSLATEDGFTPLAVALQQGHDQ 187

Query: 153 FLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCC-------KNIEDKS---PLSLA 202
            +S   L +++  K  +   L A+       D K +          ++E KS   PL +A
Sbjct: 188 VVS---LLLENDTKGKV--RLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIA 242

Query: 203 IEMGNTDVLEYIL-RSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETL 261
              GN +V   +L R+     +  +  +PL VA+K+ N  +  LL   G     K ++ L
Sbjct: 243 AHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGL 302

Query: 262 YPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNM 321
            P+H   ++GH  V VE+L +   P L  T NG + LH A +  H + V+ +++    N+
Sbjct: 303 TPLHCGARSGHEQV-VEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQ---HNV 358

Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
            +D+V N    D  T LH+AA  GH +V   LL   ++NP+ K   G T   +A ++
Sbjct: 359 PVDDVTN----DYLTALHVAAHCGHYKVAKVLLDK-KANPNAKALNGFTPLHIACKK 410

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 181/408 (44%), Gaps = 62/408 (15%)

Query: 8   AYFEAAIRGNID---DFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQY 64
           ++  AA  GN+D   ++L   I   D++   +    +G + LH+AAK GH  +  ++   
Sbjct: 34  SFLRAARAGNLDKVVEYLKGGI---DINTCNQ----NGLNALHLAAKEGHVGLVQELLGR 86

Query: 65  YPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQ---AP---------VDL 112
               ++    +G+T LH A+ AG+      LV    +I + SQ    P         +D+
Sbjct: 87  G-SSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDV 145

Query: 113 LR--MENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSN--------PTLAI- 161
           ++  +EN    +   E  F    V + +          A +  L N        P L I 
Sbjct: 146 VKYLLENGANQSTATEDGFTPLAVALQQ------GHNQAVAILLENDTKGKVRLPALHIA 199

Query: 162 ---DDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK-SPLSLAIEMGNTDVLEYIL-R 216
              DDT       +L+        +  K+   +  E   +PL +A   GN +V   +L R
Sbjct: 200 ARKDDTKSA----ALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNR 255

Query: 217 SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVM 276
                 +  +G +PL VA+K+ N  +  LL   G     K ++ L P+H A ++GH  V 
Sbjct: 256 GAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQV- 314

Query: 277 VELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE--IPGTNMTMDEVVNKMDEDG 334
           VELL E + P L  T NG + LH AA+  H + VK +++   P  ++T+D +        
Sbjct: 315 VELLLERKAPLLARTKNGLSPLHMAAQGDHVECVKHLLQYKAPVDDVTLDYL-------- 366

Query: 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
            T LH+AA  GH +V   LL   R+NP+ +   G T   +A ++  ++
Sbjct: 367 -TALHVAAHCGHYRVTKLLLDK-RANPNARALNGFTPLHIACKKNRIK 412

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 180/408 (44%), Gaps = 62/408 (15%)

Query: 8   AYFEAAIRGNID---DFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQY 64
           ++  AA  GN+D   ++L   I   D++   +    +G + LH+AAK GH  +  ++   
Sbjct: 34  SFLRAARAGNLDKVVEYLKGGI---DINTCNQ----NGLNALHLAAKEGHVGLVQELLGR 86

Query: 65  YPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQ---AP---------VDL 112
               ++    +G+T LH A+ AG+      LV    +I + SQ    P         +D+
Sbjct: 87  G-SSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDV 145

Query: 113 LR--MENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSN--------PTLAI- 161
           ++  +EN    +   E  F    V + +          A +  L N        P L I 
Sbjct: 146 VKYLLENGANQSTATEDGFTPLAVALQQ------GHNQAVAILLENDTKGKVRLPALHIA 199

Query: 162 ---DDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK-SPLSLAIEMGNTDVLEYIL-R 216
              DDT       +L+        +  K+   +  E   +PL +A   GN +V   +L R
Sbjct: 200 ARKDDTKSA----ALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNR 255

Query: 217 SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVM 276
                 +  +G +PL VA+K+ N  +  LL   G     K ++ L P+H A ++GH  V 
Sbjct: 256 GAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQV- 314

Query: 277 VELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE--IPGTNMTMDEVVNKMDEDG 334
           VELL E   P L  T NG + LH AA+  H + VK +++   P  ++T+D +        
Sbjct: 315 VELLLERGAPLLARTKNGLSPLHMAAQGDHVECVKHLLQHKAPVDDVTLDYL-------- 366

Query: 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
            T LH+AA  GH +V   LL   R+NP+ +   G T   +A ++  ++
Sbjct: 367 -TALHVAAHCGHYRVTKLLLDK-RANPNARALNGFTPLHIACKKNRIK 412

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q6RI86|TRPA1_RAT Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus GN=Trpa1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 172/386 (44%), Gaps = 78/386 (20%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIP------------STSQAPVDLLRME 116
           IN  N++  +PLH A ++G L+     +D   HI             + +Q   D++++ 
Sbjct: 233 INFVNHKKASPLHLAVQSGDLDMIKMCLDSGAHIDMMENAKCMALHFAATQGATDIVKLM 292

Query: 117 -----------NAM-GN--TALHEA-----------LFMLGRVNVWRTSIAGSS----LT 147
                      NA+ GN  T LH A           L  +G  ++  T   G S     T
Sbjct: 293 ISSYTGSSDIVNAVDGNQETLLHRASLFDHHDLADYLISVG-ADINSTDSEGRSPLILAT 351

Query: 148 MAHSYFLSNPTLA------IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNI------ED 195
            + S+ + N  L+      I D +  N ++  V   Y L +L P+    ++I      ED
Sbjct: 352 ASASWNIVNLLLSKGAKVDIKDHLGRNFLHLTVQQPYGLRNLRPEFLQMQHIKELVMDED 411

Query: 196 K---SPLSLAIEMGNTDVLEYILRSLPSGISWSSGK-SPLQVATKKRNLGVCYLLEVNGY 251
               +PL  A   G    +  +LR   S  S S  K SPL  A     +  C  L  +  
Sbjct: 412 NDGCTPLHYACRQGAPVSVNNLLRFNVSVHSKSKDKKSPLHFAASYGRINTCQRLLQDIS 471

Query: 252 SALKKNKETLY---PIHLACKNGHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHA 307
                N+  L+   P+HLA KNGH  V+  LLK+    +LF++D NG   LH A+  G+ 
Sbjct: 472 DTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKK---GALFLSDHNGWTALHHASMGGYT 528

Query: 308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD-LKNK 366
             +K I++   TN+   +  +++DE+GNT LH AA  GH++ V  LL Y   N D L NK
Sbjct: 529 QTMKVILD---TNL---KCTDRLDEEGNTALHFAAREGHAKAVAMLLSY---NADILLNK 579

Query: 367 QGMTAYKMAL---REYYMQTSIAEKQ 389
           +  +   +AL   R+  + T+I  K+
Sbjct: 580 KQASFLHIALHNKRKEVVLTTIRSKR 605

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Rattus norvegicus (taxid: 10116)

>sp|O75762|TRPA1_HUMAN Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=2 SV=3

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 161/403 (39%), Gaps = 80/403 (19%)

Query: 42  GSSLLHVAAKSGHGEITAKIAQY-------YPFLINKTNNQGDTPLHCAARAGKLNTATA 94
           G   +H AA SG  E    I ++           IN  NN   TPLH A + G L     
Sbjct: 198 GCFPIHQAAFSGSKECMEIILRFGEEHGYSRQLHINFMNNGKATPLHLAVQNGDLEMIKM 257

Query: 95  LVD-----------------FA---------KHIPSTSQAPVDLLRMENAMGNTALHEA- 127
            +D                 FA         K + S+    VD++   +    T LH A 
Sbjct: 258 CLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRAS 317

Query: 128 LFMLGRVNVWRTSI-------------------AGSSLTMAHSYFLSNPTLAIDDTIKTN 168
           LF    +  +  S+                   A +S  + +        + I D    N
Sbjct: 318 LFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRN 377

Query: 169 IINSLVAIAYFLVSLDPKLSCCKNI------EDK---SPLSLAIEMGNTDVLEYILRSLP 219
            ++  V   Y L +L P+    + I      ED    +PL  A   G    +  +L    
Sbjct: 378 FLHLTVQQPYGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNV 437

Query: 220 SGISWSSGK-SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLY---PIHLACKNGHANV 275
           S  S S  K SPL  A     +  C  L  +       N+  L+   P+HLA KNGH  V
Sbjct: 438 SIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKV 497

Query: 276 MVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG 334
           +  LLK+    +LF++D NG   LH A+  G+   +K I++   TN+   +  +++DEDG
Sbjct: 498 VQLLLKK---GALFLSDHNGWTALHHASMGGYTQTMKVILD---TNL---KCTDRLDEDG 548

Query: 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLK-NKQGMTAYKMAL 376
           NT LH AA  GH++ V  LL +   N D+  NKQ  +   +AL
Sbjct: 549 NTALHFAAREGHAKAVALLLSH---NADIVLNKQQASFLHLAL 588

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Homo sapiens (taxid: 9606)

>sp|Q8BLA8|TRPA1_MOUSE Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus GN=Trpa1 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 167/385 (43%), Gaps = 76/385 (19%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIP------------STSQAPVDLLRME 116
           IN  N++  +PLH A ++G L+     +D   HI             + +Q   D++++ 
Sbjct: 233 INFVNHKKASPLHLAVQSGDLDMIKMCLDNGAHIDMMENAKCMALHFAATQGATDIVKLM 292

Query: 117 -----------NAM-GN--TALHEA-LFMLGRVNVWRTSI-------------------A 142
                      NA+ GN  T LH A LF    +  +  S+                   A
Sbjct: 293 ISSYTGSSDIVNAVDGNQETLLHRASLFDHHDLAEYLISVGADINSTDSEGRSPLILATA 352

Query: 143 GSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNI------EDK 196
            +S  + +        + I D +  N ++  V   Y L +L P+    ++I      ED 
Sbjct: 353 SASWNIVNLLLCKGAKVDIKDHLGRNFLHLTVQQPYGLRNLRPEFMQMQHIKELVMDEDN 412

Query: 197 ---SPLSLAIEMGNTDVLEYILRSLPSGISWSSGK-SPLQVATKKRNLGVCYLLEVNGYS 252
              +PL  A   G    +  +L    S  S S  K SPL  A     +  C  L  +   
Sbjct: 413 DGCTPLHYACRQGVPVSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISD 472

Query: 253 ALKKNKETLY---PIHLACKNGHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHAD 308
               N+  L+   P+HLA KNGH  V+  LLK+    +LF++D NG   LH A+  G+  
Sbjct: 473 TRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKK---GALFLSDHNGWTALHHASMGGYTQ 529

Query: 309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD-LKNKQ 367
            +K I++   TN+   +  +++DE+GNT LH AA  GH++ V  LL Y   N D L NK+
Sbjct: 530 TMKVILD---TNL---KCTDRLDEEGNTALHFAAREGHAKAVAMLLSY---NADILLNKK 580

Query: 368 GMTAYKMAL---REYYMQTSIAEKQ 389
             +   +AL   R+  + T+I  K+
Sbjct: 581 QASFLHIALHNKRKEVVLTTIRNKR 605

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Mus musculus (taxid: 10090)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 32/217 (14%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILR---SLPSGISWSSGKSPLQVATKKRNLGVC-YLL 246
           +N   ++ L +A E G TD+++ +++   S+ +G    +G     +A K  NL V   L+
Sbjct: 52  QNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLI 111

Query: 247 EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGH 306
           E N   +   +      +H A   GH  ++  LL +    +     NG   LH AA+NGH
Sbjct: 112 EANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGH 171

Query: 307 ADMVKAIIE--------------------IPGTNMTMDEV--------VNKMDEDGNTPL 338
             +VK +IE                    + G N  + +V        +N  D  GNTPL
Sbjct: 172 TVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPL 231

Query: 339 HLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
           H+A     +++V  +L+Y   +    NK G TA  +A
Sbjct: 232 HIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIA 268

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
224124524	673	predicted protein [Populus trichocarpa]	0.746	0.436	0.343	6e-41
302143275	671	unnamed protein product [Vitis vinifera]	0.895	0.526	0.336	1e-39
225446327	666	PREDICTED: ankyrin repeat-containing pro	0.895	0.530	0.336	1e-39
224124528	705	predicted protein [Populus trichocarpa]	0.873	0.487	0.344	2e-36
224106698	703	predicted protein [Populus trichocarpa]	0.766	0.429	0.305	6e-36
224127170	655	predicted protein [Populus trichocarpa]	0.888	0.534	0.326	1e-35
224142133	456	predicted protein [Populus trichocarpa]	0.789	0.682	0.303	5e-35
224106702	428	predicted protein [Populus trichocarpa]	0.758	0.698	0.289	4e-34
224124536	406	predicted protein [Populus trichocarpa]	0.819	0.795	0.304	2e-33
224127174	708	predicted protein [Populus trichocarpa]	0.855	0.475	0.308	5e-32

>gi|224124524|ref|XP_002319353.1| predicted protein [Populus trichocarpa] gi|222857729|gb|EEE95276.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 190/396 (47%), Gaps = 102/396 (25%)

Query: 42  GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
           G+SLLHVA   G   IT+ +A+ +P LI   N+Q DT LH AAR GK          A H
Sbjct: 52  GNSLLHVAVSYGSDNITSYLAETFPSLITIQNSQKDTILHLAAREGK----------ASH 101

Query: 102 -IPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160
            I S +++   L+R  N  GNT LH+A+            I G            N  LA
Sbjct: 102 TIKSLAESNPSLMRKTNTKGNTPLHDAV------------IKG------------NKELA 137

Query: 161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNT-DVLEYILR--- 216
           I                 FLVS DP+++   N   +SPL LA+E GN  ++L+Y+L+   
Sbjct: 138 I-----------------FLVSKDPEVAYYNNKNGRSPLYLAVENGNKKEILDYLLKTEA 180

Query: 217 SLP----SGISWSSGKSPLQVATKKRNL-------------------------------- 240
           S P     G +   GKSP+  A ++RN                                 
Sbjct: 181 SFPIESEDGDALPKGKSPVHAAIEQRNRDILEKIEKAKPELLCLTDKELGNSLHYASSRG 240

Query: 241 ---GVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI 297
              GV +LL+     A K+N E  YPIHLACKN   +V+ E LK    P  F+ + G NI
Sbjct: 241 FLEGVQFLLQKFLNGAYKRNHEGNYPIHLACKNDSVDVVKEFLKITPFPKEFLNEKGQNI 300

Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           LH AA+NG  ++V+ I+    T   ++ ++N+MDEDGNTPLHLA  HG S   + L+R  
Sbjct: 301 LHVAAENGKGNVVRYILRQEKT--LVEPLLNEMDEDGNTPLHLATSHGQSVAAFVLVRDK 358

Query: 358 RSNPDLKNKQGMTAYKMALREYYMQTSIA-EKQEKS 392
           R +  + N + +T Y +A +    Q+ IA E+ EK+
Sbjct: 359 RVDSSIVNNENLTPYDIAEK----QSKIAVEQYEKT 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143275|emb|CBI21836.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 200/413 (48%), Gaps = 60/413 (14%)

Query: 5   LDPAYFEAAIRGNIDDFL-----FSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITA 59
           +D   + AA   ++D FL      S      L  IF++V    ++LLHVAA SG+ EI A
Sbjct: 56  MDLQLYRAATEADVDGFLNVLERVSTEKNLTLASIFDQVTPLKNTLLHVAAASGNLEIVA 115

Query: 60  KIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK---HIPSTSQAPV------ 110
            I   YP+L  KTN+ GDT LH AA+AG   T + +V       H  S+  + V      
Sbjct: 116 LIVYRYPWLATKTNSNGDTALHLAAKAGDELTLSVIVQLLTSDVHSQSSGYSRVWVKEVE 175

Query: 111 --DL-LRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKT 167
             DL  R  N  GNTALHEAL            I G    +A + F S+P +        
Sbjct: 176 DDDLPFRKRNKQGNTALHEAL------------INGHQW-VALNLFGSDPQVVF------ 216

Query: 168 NIINSLVAIAYFLVSLDPKLSCC--------------KNIEDKSPLSLAIEMGNTDVLEY 213
             +N       +L +     SC                 ++ KSP+  A     + VL+ 
Sbjct: 217 -YLNREGKSPLYLAAEAGYDSCVLAMLKVPVGSENPNTRLKGKSPIHAATRERQSGVLDI 275

Query: 214 ILRSLPSGISW--SSGKSPLQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIHLACKN 270
           +L+  PS I      G++PL  A    +L GV YLL      A++++    +PIH+A   
Sbjct: 276 MLKKDPSMIYSRDEEGRTPLHYAASIGHLKGVHYLLGKYALGAVERDNSGFFPIHMASIK 335

Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
           GH +V+ ELL+    P   ++DNG NILH AA NG  ++V  I++ P     + +++N+ 
Sbjct: 336 GHVDVIRELLRHCPDPRELLSDNGQNILHVAAINGKYEVVSCILKTP----ELGKLINEK 391

Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT 383
           D+ GNTPLHLA +H H  +V AL    R +  L N +G+TA+  A  EYYM+T
Sbjct: 392 DKVGNTPLHLATMHWHPMIVSALTGDERVDLKLLNNEGLTAFDAA--EYYMET 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446327|ref|XP_002273773.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 200/413 (48%), Gaps = 60/413 (14%)

Query: 5   LDPAYFEAAIRGNIDDFL-----FSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITA 59
           +D   + AA   ++D FL      S      L  IF++V    ++LLHVAA SG+ EI A
Sbjct: 56  MDLQLYRAATEADVDGFLNVLERVSTEKNLTLASIFDQVTPLKNTLLHVAAASGNLEIVA 115

Query: 60  KIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK---HIPSTSQAPV------ 110
            I   YP+L  KTN+ GDT LH AA+AG   T + +V       H  S+  + V      
Sbjct: 116 LIVYRYPWLATKTNSNGDTALHLAAKAGDELTLSVIVQLLTSDVHSQSSGYSRVWVKEVE 175

Query: 111 --DL-LRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKT 167
             DL  R  N  GNTALHEAL            I G    +A + F S+P +        
Sbjct: 176 DDDLPFRKRNKQGNTALHEAL------------INGHQW-VALNLFGSDPQVVF------ 216

Query: 168 NIINSLVAIAYFLVSLDPKLSCC--------------KNIEDKSPLSLAIEMGNTDVLEY 213
             +N       +L +     SC                 ++ KSP+  A     + VL+ 
Sbjct: 217 -YLNREGKSPLYLAAEAGYDSCVLAMLKVPVGSENPNTRLKGKSPIHAATRERQSGVLDI 275

Query: 214 ILRSLPSGISW--SSGKSPLQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIHLACKN 270
           +L+  PS I      G++PL  A    +L GV YLL      A++++    +PIH+A   
Sbjct: 276 MLKKDPSMIYSRDEEGRTPLHYAASIGHLKGVHYLLGKYALGAVERDNSGFFPIHMASIK 335

Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
           GH +V+ ELL+    P   ++DNG NILH AA NG  ++V  I++ P     + +++N+ 
Sbjct: 336 GHVDVIRELLRHCPDPRELLSDNGQNILHVAAINGKYEVVSCILKTP----ELGKLINEK 391

Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT 383
           D+ GNTPLHLA +H H  +V AL    R +  L N +G+TA+  A  EYYM+T
Sbjct: 392 DKVGNTPLHLATMHWHPMIVSALTGDERVDLKLLNNEGLTAFDAA--EYYMET 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124528|ref|XP_002319354.1| predicted protein [Populus trichocarpa] gi|222857730|gb|EEE95277.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 199/372 (53%), Gaps = 28/372 (7%)

Query: 32  HHIFEKVLTD-GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGK-L 89
            H+ EK++T  G++LLH+A   G   I A + + +P LI   NNQ DT LH AAR G  +
Sbjct: 46  QHLTEKLVTPCGNTLLHLAVSYGSDNIIAYLVKEFPSLITMANNQNDTVLHLAAREGTAI 105

Query: 90  NTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMA 149
           +T  +LV+     PS       L+RM N   NT LH+A+ + G   V +  +A       
Sbjct: 106 HTIKSLVELN---PS-------LMRMANGKRNTPLHDAV-IKGNEEVAKFLVARDPEVAY 154

Query: 150 HS-YFLSNPT-LAIDDTIKTNIINSLVAI-AYFLVSLDPKLSCCKNIEDKSPLSLAIEMG 206
           +S    S+P  LA+++  K  I++ L+ + A   ++ +   +  K    KSP+  AIE  
Sbjct: 155 YSNKNGSSPLYLAVENGNKNGILDDLLDLGASIPITREDGDALPKR---KSPVHAAIEQR 211

Query: 207 NTDVLEYILRSLPSGISWSSGK--SPLQVATKKRNL-GVCYLLE--VNGYSALKKNKETL 261
           N D+LE I ++ P  +  +  +  + L  A+    L GV +LL+  +NG  A K N E  
Sbjct: 212 NIDLLEKIAKAKPELLCLTDEELGNSLHYASSICFLEGVRFLLKNFLNG--AYKTNSEGN 269

Query: 262 YPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNM 321
           YPIH+ACKN   +++ E L  +  P  F+   G NILH AA+NG  ++V+ I+E      
Sbjct: 270 YPIHVACKNESVDLVKEFLDIFPYPKEFLNKKGQNILHVAAENGQGNVVRYILE--QYQK 327

Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYM 381
            ++ ++N+MDEDGNTPLHLAA HG S   + L+R  R    + N +  T Y +A ++  M
Sbjct: 328 IVEPLLNEMDEDGNTPLHLAARHGQSTAAFVLVRDKRVKNSIVNNENFTPYDVAKQQSKM 387

Query: 382 QTSIAEKQEKSM 393
                +K ++ +
Sbjct: 388 AVDQYDKTDEML 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106698|ref|XP_002333641.1| predicted protein [Populus trichocarpa] gi|222837929|gb|EEE76294.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 180/386 (46%), Gaps = 84/386 (21%)

Query: 34  IFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTAT 93
           I+ +V   G+SLLHV+A +G   +T  + Q++P L+ + N   DT LH AA AG+L TAT
Sbjct: 73  IYTQVSPSGNSLLHVSASNGSKHVTELLLQHFPLLMMRKNFHDDTALHLAAGAGQLGTAT 132

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYF 153
            L++ AK     S  P + L M+N  GNTALH+A                          
Sbjct: 133 VLINKAKGHGGASHFP-NFLEMKNDRGNTALHDA-------------------------- 165

Query: 154 LSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEY 213
                          +IN    +A+FLVS   KLS  +N E KSPL LA+E  +  +L  
Sbjct: 166 ---------------VINGHGILAHFLVSESLKLSYSENNERKSPLYLAVENSDEKMLTT 210

Query: 214 ILRSLPSGISWSS---GKSPLQVATKKRNLGVC--------------------------- 243
           ++ ++   +   +   GKSP+  A + R   +                            
Sbjct: 211 LMDTIRDDVDLLNKLEGKSPVHAAVQGRKRTILEQIAKKKPGLLRRKDEKGENPLHCAAY 270

Query: 244 --YLLEV----NGY--SALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGC 295
             Y+ E     N Y   A+++N E   PIH+A K G+ +V+   + +W  P+ F+     
Sbjct: 271 MGYVWETQFLFNEYRDGAIQQNDEGNMPIHVASKKGYVDVVDAYISKWTDPAEFLNSKRQ 330

Query: 296 NILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
           NILH AA+ G   +VK I+     N  ++ ++NK D DGNTPLHLA+ +G S   + L+R
Sbjct: 331 NILHVAAERGRHRVVKYILR----NKNLEALINKQDLDGNTPLHLASKNGGSIATFTLVR 386

Query: 356 YGRSNPDLKNKQGMTAYKMALREYYM 381
                 D  N + +T Y++A ++  M
Sbjct: 387 NSMVMKDKANGENLTPYEVAKKQSKM 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127170|ref|XP_002329417.1| predicted protein [Populus trichocarpa] gi|222870467|gb|EEF07598.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/395 (32%), Positives = 199/395 (50%), Gaps = 45/395 (11%)

Query: 18  IDDFLFSDIPKQDL--------HHIFEKVLT-DGSSLLHVAAKSGHGEITAKIAQYYPFL 68
           +D FL+  + + ++         H  +K++T  G+SLLHVA   G  +I A +A+ +P L
Sbjct: 1   MDRFLYEYVKEDNIVTFKSCVQKHSPDKLVTPSGNSLLHVAVSYGSDKIAAYLAEEFPSL 60

Query: 69  INKTNNQGDTPLHCAARAGKL-NTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           I   N+Q DT LH AAR G+L NT   LV      PS       L+R+EN  GN  LH+A
Sbjct: 61  ITSRNDQEDTILHVAAREGRLSNTIKTLVG---SNPS-------LVRLENRKGNIPLHDA 110

Query: 128 LFMLGRVNVWRTSIAGSSLTMAHSYFLSNPT------LAIDDTIKTNIINSLVAIAYFLV 181
           +    R N  + ++A        + F +N T      LA++   K  I++ L+ I     
Sbjct: 111 VI---RGN--KEAVAWLVCKDPGAAFYNNNTQKSPLYLAVESGHKNGILDDLLNI----- 160

Query: 182 SLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS--GISWSSGKSPLQVATKKRN 239
               + S     + KSP+  AIE  N D+LE I ++ P   G       + L  A+    
Sbjct: 161 ----EASSGALQKGKSPVHAAIEQRNKDILEKIGKAKPELLGFKDEGLGNSLHYASSMGY 216

Query: 240 L-GVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNIL 298
           L G  +LL+     A ++++E  YPIHLACKN   +++ EL+K +  P  F+   G NIL
Sbjct: 217 LDGARFLLQKFPDGANERDQEGNYPIHLACKNDSVDLVKELMKVFPYPKEFLNAKGQNIL 276

Query: 299 HFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR 358
           H AA+NG   +V+ I++       ++ ++N +DEDGNTPLHLA   G S   +AL+R  R
Sbjct: 277 HVAAENGQGKVVRHILK--QDQKLIEPLLNGIDEDGNTPLHLATQSGQSNAAFALVRDTR 334

Query: 359 SNPDLKNKQGMTAYKMALREYYMQTSIAEKQEKSM 393
               + N    T Y +A  +  +  +  EK ++ +
Sbjct: 335 VERSIVNNANKTPYDIAEEQSKIAVNQYEKTDEML 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142133|ref|XP_002324413.1| predicted protein [Populus trichocarpa] gi|222865847|gb|EEF02978.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 180/372 (48%), Gaps = 61/372 (16%)

Query: 13  AIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKT 72
           A+ G + D L     ++ L+ IF+ V   G+SLLHVAA  G   +T  +  ++P LI + 
Sbjct: 72  ALFGLLSDKLEHVSSEEVLNVIFKHVAASGNSLLHVAASHGSEGVTQLLCHHFPLLITRK 131

Query: 73  NNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLG 132
           N  GD  LH AAR G+ +T   LV   K I   +     LLRM+N  GNT LH+A+    
Sbjct: 132 NFLGDNALHLAARFGRFDTIQNLVKHVK-IHHRTLELASLLRMKNNKGNTPLHDAVIKGC 190

Query: 133 RVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKN 192
           RV                                         +A FLV  D ++S  KN
Sbjct: 191 RV-----------------------------------------VACFLVYEDLEVSYHKN 209

Query: 193 IEDKSPLSLAIEMGNTDVLEYILRSLPSG--ISWSSGKSPLQVATKKRNLGVCYLLEVNG 250
            E KSPL LA+E  + +++   + ++P G     + GK  + +   K+   + +L    G
Sbjct: 210 KEHKSPLYLAVESCDEEMIASFIEAMPEGNLAKLADGKPDIMLPEDKKGGNLLHLAASMG 269

Query: 251 Y-------------SALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI 297
           +             +A ++N+E   PIH+A + GH  V+ ELL  W  P  F+ + G NI
Sbjct: 270 FLFGARLLVNRCPVAASQRNEEGNLPIHVASQKGHLEVVRELLIYWFDPMDFLNEKGQNI 329

Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           LH AA++G   +V+ ++     N  ++ ++N+ D +GNTPLHLAA+ G ++++ AL+   
Sbjct: 330 LHVAAESGQMKLVEELL----GNRDLEALINEKDYNGNTPLHLAAMCGRTEIMQALVSDK 385

Query: 358 RSNPDLKNKQGM 369
           R +  + N + +
Sbjct: 386 RVDKRIVNNEKL 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106702|ref|XP_002333642.1| predicted protein [Populus trichocarpa] gi|222837930|gb|EEE76295.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 173/383 (45%), Gaps = 84/383 (21%)

Query: 34  IFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTAT 93
           I+ +V   G+SLLHV+A+ G  ++T  + Q++P L+ + N   DT LH AA AGKL T T
Sbjct: 73  IYTQVSPSGNSLLHVSARHGSKDVTELLLQHFPLLMTRKNFHKDTALHLAAGAGKLGTTT 132

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYF 153
           AL++ AK     S      L M+N  GNTALH+A                          
Sbjct: 133 ALINKAKGYLGASDFSY-FLEMKNDRGNTALHDA-------------------------- 165

Query: 154 LSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEY 213
                          ++N    +A+FLVS   KL+  +N E KSPL LA+E  +  +L  
Sbjct: 166 ---------------VLNRHDILAHFLVSESSKLAYTENNEHKSPLYLAVENSDEKMLTI 210

Query: 214 ILRSLPSGISW---SSGKSPLQVATKKRN------------------------------- 239
           ++ ++P  +       GKSP+  A + R                                
Sbjct: 211 LMDAIPDDVDLLDKLEGKSPVHAAVQGRKRKILEQIAKEKPGLLRRKDEKGGNPFHCAAY 270

Query: 240 ----LGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGC 295
                G  +L +     A+++N E   PIH+A K  H +V+   +  W   + F+     
Sbjct: 271 MGYVWGTQFLFDKYRDGAIQQNDEGNMPIHVASKKDHVDVVDAYISNWTDATEFLNSKRQ 330

Query: 296 NILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
           N+LH AA++G   +VK I+     N  + E++N+ D DGNTPLHLA+ +G S   + L+R
Sbjct: 331 NVLHVAAESGRHLVVKYILR----NNKLKELINEQDLDGNTPLHLASKNGRSIATFTLVR 386

Query: 356 YGRSNPDLKNKQGMTAYKMALRE 378
                  + N + +T Y +A ++
Sbjct: 387 NSMVMKRIANGENLTPYDVAEKQ 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124536|ref|XP_002319356.1| predicted protein [Populus trichocarpa] gi|222857732|gb|EEE95279.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/433 (30%), Positives = 195/433 (45%), Gaps = 110/433 (25%)

Query: 5   LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTD-GSSLLHVAAKSGHGEITAKIAQ 63
           +D   +E   + NI++F       +   H+ EK++T  G+SLLHVA +     ITA +A+
Sbjct: 6   IDSKLYECVKQDNIEEF-----KSRVQQHLAEKLVTPCGNSLLHVAIRYKSNNITAYLAK 60

Query: 64  YYPFLINKTNNQGDTPLHCAARAGKLN-TATALVDFAKHIPSTSQAPVDLLRMENAMGNT 122
             P LI   N+Q DT LH AAR G ++ T   LV+          +   LLRM N  GNT
Sbjct: 61  EIPSLITSRNDQQDTILHVAAREGSVSHTIRNLVN----------SNAFLLRMTNREGNT 110

Query: 123 ALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVS 182
            LH A                                         +IN    +A FL+S
Sbjct: 111 PLHVA-----------------------------------------VINGNKEVAKFLIS 129

Query: 183 LDPKLSCCKNIEDKSPLSLAIEMGNTD-VLEYILR---SLPS----GISWS---SGKSPL 231
            D +++  KN   +SPL LA+E  N + +L+ +L    S+P+    G S      GKSP+
Sbjct: 130 RDREVAYYKNKTGRSPLYLAVENRNMNGILDDLLNEEASIPTEREDGDSLGMLPQGKSPV 189

Query: 232 QVATKKRNLG-----------------------------------VCYLLEVNGYSALKK 256
             A + R +G                                   V +LL+     A + 
Sbjct: 190 HAAVENRIIGILQKIEEAKPELLRLHDKEFGNPLHYASSTGYVEGVQFLLQKYRAGADET 249

Query: 257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI 316
           ++E  YPIHLACK G   ++ E LK    P+ F+ + G NILH AA+N H  ++  I+E 
Sbjct: 250 DQEGNYPIHLACKGGSVALLEEFLKVIPYPNEFINEKGQNILHVAAQNEHGFLIMYILE- 308

Query: 317 PGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
                 ++ ++N MDEDGNTPLHLA  HG    V+ L+R    +  + N  G+T Y++  
Sbjct: 309 -QDKKIVETLLNAMDEDGNTPLHLATQHGRPTSVFLLVRDIGFHRHIVNNDGLTPYELGR 367

Query: 377 REYYMQTSIAEKQ 389
           +    Q+ IA +Q
Sbjct: 368 K----QSKIAVQQ 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127174|ref|XP_002329418.1| predicted protein [Populus trichocarpa] gi|222870468|gb|EEF07599.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 176/350 (50%), Gaps = 13/350 (3%)

Query: 34  IFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTAT 93
           I+ +V   G+SLLHV+A +G  ++T  + Q++P L+ + N   DT LH AA AG+L T T
Sbjct: 73  IYTQVSPSGNSLLHVSASNGSKDVTELLLQHFPLLMTRKNFHKDTALHLAAGAGQLRTIT 132

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSS--LTMAHS 151
            L++ AK     S      L M+N  GN+ALH+A+       V R  ++ SS  L   ++
Sbjct: 133 VLINKAKGHGEASDFS-SFLEMKNDRGNSALHDAVINRHH-EVARFLVSESSKLLYTQNN 190

Query: 152 YFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVL 211
              S   LA++++I     + +  I   L ++   +     +E KSP+  A++     +L
Sbjct: 191 ERKSPLYLAVENSIDKQSDDKMFTI--LLDAIPDDVDLLNKLEGKSPVHAAVQGSKRKIL 248

Query: 212 EYILRSLPSGISW--SSGKSPLQVATKKRNLG-VCYLLEVNGYSALKKNKETLYPIHLAC 268
           E I +  P  +      G +PL  A     +    +L +     A++ N E   PIH+A 
Sbjct: 249 EQIAKEKPGLLRRKDEKGGNPLHCAASMGYVSETQFLFDKYRDGAIQLNDEGNMPIHVAS 308

Query: 269 KNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVN 328
           K GH  V+   +  W   + F+     NILH AA++G   +VK I+     N  + E++N
Sbjct: 309 KKGHVCVVDAYISNWTEATEFLNSKRQNILHVAAESGRHLVVKYILR----NNKLKELIN 364

Query: 329 KMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
           + D DGNTPLHLA+ +G S   + L+R       + N + +T Y +A ++
Sbjct: 365 EQDLDGNTPLHLASKNGRSIATFTLVRNSMVMKRIANGENLTPYDVAEKQ 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.895	0.521	0.300	6.2e-27
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.951	0.585	0.274	6.9e-27
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.895	0.573	0.304	7.1e-25
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.819	0.465	0.295	1.4e-21
ZFIN|ZDB-GENE-081104-19	1929	si:ch211-173b16.3 "si:ch211-17	0.908	0.185	0.262	7e-21
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.812	0.559	0.290	1.3e-20
UNIPROTKB|F1NJ80	1699	ANK3 "Uncharacterized protein"	0.880	0.204	0.281	1.9e-19
UNIPROTKB|F1NNX8	1737	ANK3 "Uncharacterized protein"	0.880	0.199	0.281	2e-19
UNIPROTKB|F1NNX6	1824	ANK3 "Uncharacterized protein"	0.880	0.190	0.281	2.1e-19
UNIPROTKB|F1NNX7	1915	ANK3 "Uncharacterized protein"	0.880	0.181	0.281	2.3e-19

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 6.2e-27, P = 6.2e-27
 Identities = 112/373 (30%), Positives = 191/373 (51%)

Query:    12 AAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINK 71
             AA+R   + +L  D+ K D++     V   G+++LH+AA +GH ++   I   YP L+ K
Sbjct:   103 AAVRAGDETYL-RDM-KFDVNIALSSVNDHGNTMLHLAAAAGHTDLVCYILNAYPGLLMK 160

Query:    72 TNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM-ENAMGNTALHEALFM 130
             +N+ G+  LH AA AG L    ALV F K I          +   ++   + ALH +L  
Sbjct:   161 SNSMGEVALHVAAGAGHLAVVEALVSFIKDISCNKPGVAKKIYFAKDRHQDNALHVSL-K 219

Query:   131 LGRVNVWRTSI-AGSSLT-MAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS 188
                + V    + A  SL+ +A++  +S   LA++   + ++  ++   +    S    L+
Sbjct:   220 RKHLKVASCLVCAEQSLSFVANNDGVSPLYLAVEAG-QADLAKTMWQHSNNGSSSTSTLA 278

Query:   189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW-SSGKSPLQV-ATKKRNLGVCYLL 246
                 I  +S +  A++    D+L  IL    S I++   G++ L   A+     G CYLL
Sbjct:   279 --SKIGGRSIVHGAMKARRKDILVAILSEDASLINFRDEGRTCLSFGASLGYYEGFCYLL 336

Query:   247 EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP-SLFVTDN-GCNILHFAAKN 304
             +    S    + +  +PIH+A K G+  ++  +LK  RCP +L + D    N+LH AAKN
Sbjct:   337 DKALDSVYVSDDDGSFPIHMAVKYGYVKILKAILK--RCPDALELLDRENQNVLHVAAKN 394

Query:   305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLK 364
             G  +++K I+     +   ++++N+ D +GNTPLHLA  + H +VV ++L +  +  DLK
Sbjct:   395 GKIEVLKFILRCC-KDKNKEKLINEEDANGNTPLHLATKNWHPKVV-SMLTWD-NRVDLK 451

Query:   365 --NKQGMTAYKMA 375
               N  G+TA  +A
Sbjct:   452 TLNHDGVTALDIA 464

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 6.9e-27, P = 6.9e-27
 Identities = 110/401 (27%), Positives = 185/401 (46%)

Query:     5 LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTD-GSSLLHVAAKSGHGEITAKIAQ 63
             ++P  F A   GN+    F D  K + +        + G   LH+AA  G  E+  +I  
Sbjct:    36 MNPEIFSAMRAGNVK---FLDKMKTNNNTPLACFRNETGDFTLHLAAAWGRLELVKRIVS 92

Query:    64 YYPFLINKTNNQGDTPLHCAARAGKLNTATALV----DFAKHIPSTSQAPVDLLRMENAM 119
               P L+ +TN++   PLH AA AG+L    A V    + +  +    +  V+L  M++  
Sbjct:    93 ECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVNLYAMKDID 152

Query:   120 GNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYF 179
             GNTALH AL   G +      +  + L      FL+N    +       I  SL  +   
Sbjct:   153 GNTALHLAL-KGGHLKTAACLVKANHLAS----FLAN-NHGVSPLFTAIIAGSLTLVEAM 206

Query:   180 LVSLDPKLSCCKNIED-KSPLSLAIEMGNTDVLEYILRSLPSGISW--SSGKSPLQVATK 236
             +       +    +E  KS +  A++  N+D+L+ IL   PS ++     G++ L VA  
Sbjct:   207 MYVPGQTCNLASKLEGRKSLVHAALKAKNSDILDVILSEDPSLVNERDEEGRTCLSVAAY 266

Query:   237 KRNL-GVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPS--LFVTDN 293
                  GV  LL  +  +  + + +  YPIH+A + G   + ++LLK   CP     +   
Sbjct:   267 VGYYKGVVNLLHRSTSNVFECDDDGSYPIHMAVEKGRVKIFLKLLK--CCPDSQYLLNKQ 324

Query:   294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
             G NILH AAK+G        + I   ++  ++++ + D DGNTPLHLA L    + V  L
Sbjct:   325 GQNILHIAAKSGKTGTYLLQV-IKAYDLIKNDLIMEQDVDGNTPLHLATLTWRPRTVNIL 383

Query:   354 LRYGRSNP-DLKNKQGMTAYKMALREYYMQTSIAEKQEKSM 393
              ++   N   ++NK G++A  +A  E  +Q++   ++  ++
Sbjct:   384 NKFTLGNHLHIRNKDGLSALDIA--ESNLQSNYVFRERMTL 422

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 7.1e-25, P = 7.1e-25
 Identities = 117/384 (30%), Positives = 173/384 (45%)

Query:     3 EVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIA 62
             E+++PA    A+R      L   I   D+      V   G+S+LH+AA  GH  I   I 
Sbjct:    35 EIMNPAIL-CAVRAGDKVSLLKRI-NDDVKVTQRLVDNQGNSILHIAAALGHVHIVEFII 92

Query:    63 QYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNT 122
               +P L+   N  G+T LH AARAG LN    LV F     S+S       + +N  G+T
Sbjct:    93 STFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFITE--SSSYDAFIAAKSKN--GDT 148

Query:   123 ALHEALFMLGRVNVWRTSIAGSSLTMAHSY-FLSNPTLAIDDTIKTNIINSLVAIAYFLV 181
             ALH AL   G+       +A   +++ H   F  N   A    +        + +     
Sbjct:   149 ALHAAL--KGK----HVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLES 202

Query:   182 SLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSS--GKSPLQV-ATKKR 238
             S  P +        KS +  A++    D+L  +LR  P  I   +  G++ L   A+   
Sbjct:   203 SSSPSI-LASMFSGKSVIHAAMKANRRDILGIVLRQDPGLIELRNEEGRTCLSYGASMGC 261

Query:   239 NLGVCYLL-EVN-GYSAL--KKNKETLYPIHLACKNGHANVMVELLKEWRCP-SLFVTDN 293
               G+ Y+L E +   S+L    + +   PIH+A K GH  ++ E LK   CP S  + +N
Sbjct:   262 YEGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKH--CPDSRELLNN 319

Query:   294 GC-NILHFAAKNGHADMVKAIIEIP-GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
              C NI H AA  G + +VK ++++  G  M     +N+ D +GNTPLHLA  H +  VV 
Sbjct:   320 QCQNIFHVAAIAGKSKVVKYLLKLDEGKRM-----MNEQDINGNTPLHLATKHRYPIVVN 374

Query:   352 ALLRYGRSNPDLKNKQGMTAYKMA 375
              L      N    N +G TA  +A
Sbjct:   375 MLTWNDGINLRALNNEGFTALDIA 398

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 105/355 (29%), Positives = 169/355 (47%)

Query:    42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGK---LNTATALVDF 98
             G S+LH+A   GH E+  +I    P L+ + N+ G TPLH AA +G    +    ALV F
Sbjct:   132 GDSILHLAVTWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTF 191

Query:    99 AK-HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLT---MAHSYFL 154
             +   + +     ++   +++  GNTAL+ A+   GR       +  ++     + + Y +
Sbjct:   192 SSARLCNEESERMNPYVLKDKDGNTALYYAIE--GRYFEMAVCLVNANQDAPFLGNKYGV 249

Query:   155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK--SPLSLA----IEMGNT 208
             S+  +AI+    T  ++ + AI   + + D K     N+E K     SLA    +     
Sbjct:   250 SSLFVAIN----TGDVSLVKAILKIIGNKDLK-GKKSNLESKLQGQKSLAHVALVTQSIA 304

Query:   209 DVLEYILRSLPSGISWS--SGKSPLQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIH 265
              VL+ IL   PS +     +G + L +A       GVC LLE +       +++  +PIH
Sbjct:   305 GVLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIH 364

Query:   266 LACKNGHANVMVELLKEWRCPSL--FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTM 323
              A + GH N++ E +K  RCP     +   G N+LH AAKNG   +   +I     N   
Sbjct:   365 TAAEKGHENIVEEFIK--RCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLI----INKDT 418

Query:   324 DEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
             + +    D DGNTPLHLA ++ H + +  L R  +    ++NK G+ A  +A RE
Sbjct:   419 EHLGVGQDVDGNTPLHLAVMNWHFKSITWLARSSKILK-VRNKNGLRARDIAERE 472

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-081104-19 si:ch211-173b16.3 "si:ch211-173b16.3" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 7.0e-21, P = 7.0e-21
 Identities = 102/388 (26%), Positives = 175/388 (45%)

Query:     8 AYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF 67
             ++  AA  GN++  L  D  K  +         +G + LH+A+K GH ++  ++  ++  
Sbjct:     9 SFLRAARSGNLEKAL--DHIKNGID--INTANQNGLNGLHLASKEGHVKMVLELL-HHGI 63

Query:    68 LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
             ++  T  +G+T LH AA AG+    T LV++  ++ + SQ     L M  A     L   
Sbjct:    64 VLETTTKKGNTALHIAALAGQEQVVTELVNYGANVNAQSQKGFTPLYM--AAQENHLEVV 121

Query:   128 LFML--GRVNVWRTSIAGSSLTMAHSYFLSNPT-LAIDDTIKTNII---------NSLVA 175
              F+L  G      T    + L +A      N   L I+   K  +          N    
Sbjct:   122 KFLLDNGANQTIPTEDGFTPLAVALQQGHENVVALLINHGTKGKVRLPALHIAARNDDTR 181

Query:   176 IAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL-RSLPSGISWSSGKSPLQVA 234
              A  L+  DP           +PL +A    N +V + +L R      +  +G +PL +A
Sbjct:   182 TAAVLLQNDPNPDVLSKT-GFTPLHIAAHYENLNVAQLLLNRGADVNFTPKNGITPLHIA 240

Query:   235 TKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNG 294
             +++ N+ +  LL   G     K K+ L P+H A +NGH  + +E+L +   P    T NG
Sbjct:   241 SRRGNVIMVRLLLDRGAKIDAKTKDELTPLHCAARNGHVRI-IEILLDQGAPIQAKTKNG 299

Query:   295 CNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
              + +H AA+  H D ++ +++    N  +D++      D  TPLH+AA  GH +V   LL
Sbjct:   300 LSPIHMAAQGDHLDCIRQLLQY---NAEIDDITL----DHLTPLHVAAHCGHHRVAKVLL 352

Query:   355 RYGRSNPDLKNKQGMTAYKMALREYYMQ 382
               G + P+ +   G T   +A ++ +M+
Sbjct:   353 DKG-AKPNTRALNGFTPLHIACKKNHMR 379

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 102/351 (29%), Positives = 167/351 (47%)

Query:    42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD---- 97
             G S+LH+AA+ GH E+   I    P L+ + N +   PLH AA AG      ALV     
Sbjct:   115 GDSVLHLAARWGHLELVKNIISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTF 174

Query:    98 FAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLT---MAHSYFL 154
             F+  +    +  ++   + +  GNTALH A+   GR      S+   +     + ++  +
Sbjct:   175 FSDRLAEEDRERLNPYVLRDKYGNTALHLAIE--GRYMEMAASLVNENQNASFLENNEGI 232

Query:   155 SNPTLAI---DDTIKTNIINSLVA--IAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTD 209
             S+  +A+   D T+   I+ +     +     +LD KL   K++     + +A+   +  
Sbjct:   233 SSLYMAVEAGDVTLVKEILKTAGNNDLEGRNSNLDSKLEGRKHL-----VHVALNARSIG 287

Query:   210 VLEYILRSLPS--GISWSSGKSPLQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIHL 266
             VL+ IL   PS        G++ L  A       GVC LL+ +  +    +++  +PIH 
Sbjct:   288 VLDVILNEYPSLEDERDEEGRTCLSFAASIGFYKGVCNLLDRSTKNVYVCDEDGSFPIHT 347

Query:   267 ACKNGHANVMVELLKEWRCP-SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMD 324
             A +NGH  ++ E+LK  RCP S  + +  G N+LH AAK G  ++VK+++    T     
Sbjct:   348 AAENGHIRIVKEILK--RCPHSKHMLNKLGQNVLHIAAKIGEHNLVKSLMRSDDTK---- 401

Query:   325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
              +    D DGNTPLHLA L+   + +  L    +    L+N  G+TA  +A
Sbjct:   402 HLGVGQDVDGNTPLHLAVLNWRYRSIRTLASDVKIL-QLRNDNGLTARGIA 451

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NJ80 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 110/391 (28%), Positives = 180/391 (46%)

Query:     8 AYFEAAIRGNID---DFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQY 64
             +Y  AA  GN++   D+L S +   D++ I  +   +G + LH+A+K GH E+ +++ Q 
Sbjct:     2 SYLRAARAGNLEKALDYLKSGV---DIN-ISNQ---NGLNALHLASKEGHVEVVSELIQR 54

Query:    65 YPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTAL 124
                 ++    +G+T LH A+ AG+      LV    ++ + SQ     L M  A     L
Sbjct:    55 GAS-VDAATKKGNTALHIASLAGQAEVVKVLVTNRANVNAQSQNGFTPLYM--AAQENHL 111

Query:   125 HEALFML--GRVNVWRTSIAGSSLTMA----HSYFLSNPTLAIDDTIKTNIINSLVAIAY 178
                 F+L  G      T    + L +A    H   +S   L +++  K  +   L A+  
Sbjct:   112 EVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVS---LLLENDTKGKV--RLPALHI 166

Query:   179 FLVSLDPKLSCC-------KNIEDKS---PLSLAIEMGNTDVLEYIL-RSLPSGISWSSG 227
                  D K +          ++E KS   PL +A   GN +V   +L R      +  + 
Sbjct:   167 AARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFTARND 226

Query:   228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPS 287
              +PL VA+K+ N  +  LL   G     K ++ L P+H   ++GH  V VE+L +   P 
Sbjct:   227 ITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQV-VEMLLDRGAPI 285

Query:   288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS 347
             L  T NG + LH A +  H + V+ +I+    N+ +D+V N    D  T LH+AA  GH 
Sbjct:   286 LSKTKNGLSPLHMATQGDHLNCVQLLIQ---HNVPVDDVTN----DYLTALHVAAHCGHY 338

Query:   348 QVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
             +V   LL   ++NP+ K   G T   +A ++
Sbjct:   339 KVAKVLLDK-KANPNAKALNGFTPLHIACKK 368

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX8 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 110/391 (28%), Positives = 180/391 (46%)

Query:     8 AYFEAAIRGNID---DFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQY 64
             +Y  AA  GN++   D+L S +   D++ I  +   +G + LH+A+K GH E+ +++ Q 
Sbjct:     2 SYLRAARAGNLEKALDYLKSGV---DIN-ISNQ---NGLNALHLASKEGHVEVVSELIQR 54

Query:    65 YPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTAL 124
                 ++    +G+T LH A+ AG+      LV    ++ + SQ     L M  A     L
Sbjct:    55 GAS-VDAATKKGNTALHIASLAGQAEVVKVLVTNRANVNAQSQNGFTPLYM--AAQENHL 111

Query:   125 HEALFML--GRVNVWRTSIAGSSLTMA----HSYFLSNPTLAIDDTIKTNIINSLVAIAY 178
                 F+L  G      T    + L +A    H   +S   L +++  K  +   L A+  
Sbjct:   112 EVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVS---LLLENDTKGKV--RLPALHI 166

Query:   179 FLVSLDPKLSCC-------KNIEDKS---PLSLAIEMGNTDVLEYIL-RSLPSGISWSSG 227
                  D K +          ++E KS   PL +A   GN +V   +L R      +  + 
Sbjct:   167 AARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFTARND 226

Query:   228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPS 287
              +PL VA+K+ N  +  LL   G     K ++ L P+H   ++GH  V VE+L +   P 
Sbjct:   227 ITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQV-VEMLLDRGAPI 285

Query:   288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS 347
             L  T NG + LH A +  H + V+ +I+    N+ +D+V N    D  T LH+AA  GH 
Sbjct:   286 LSKTKNGLSPLHMATQGDHLNCVQLLIQ---HNVPVDDVTN----DYLTALHVAAHCGHY 338

Query:   348 QVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
             +V   LL   ++NP+ K   G T   +A ++
Sbjct:   339 KVAKVLLDK-KANPNAKALNGFTPLHIACKK 368

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX6 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 110/391 (28%), Positives = 180/391 (46%)

Query:     8 AYFEAAIRGNID---DFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQY 64
             +Y  AA  GN++   D+L S +   D++ I  +   +G + LH+A+K GH E+ +++ Q 
Sbjct:     2 SYLRAARAGNLEKALDYLKSGV---DIN-ISNQ---NGLNALHLASKEGHVEVVSELIQR 54

Query:    65 YPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTAL 124
                 ++    +G+T LH A+ AG+      LV    ++ + SQ     L M  A     L
Sbjct:    55 GAS-VDAATKKGNTALHIASLAGQAEVVKVLVTNRANVNAQSQNGFTPLYM--AAQENHL 111

Query:   125 HEALFML--GRVNVWRTSIAGSSLTMA----HSYFLSNPTLAIDDTIKTNIINSLVAIAY 178
                 F+L  G      T    + L +A    H   +S   L +++  K  +   L A+  
Sbjct:   112 EVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVS---LLLENDTKGKV--RLPALHI 166

Query:   179 FLVSLDPKLSCC-------KNIEDKS---PLSLAIEMGNTDVLEYIL-RSLPSGISWSSG 227
                  D K +          ++E KS   PL +A   GN +V   +L R      +  + 
Sbjct:   167 AARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFTARND 226

Query:   228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPS 287
              +PL VA+K+ N  +  LL   G     K ++ L P+H   ++GH  V VE+L +   P 
Sbjct:   227 ITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQV-VEMLLDRGAPI 285

Query:   288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS 347
             L  T NG + LH A +  H + V+ +I+    N+ +D+V N    D  T LH+AA  GH 
Sbjct:   286 LSKTKNGLSPLHMATQGDHLNCVQLLIQ---HNVPVDDVTN----DYLTALHVAAHCGHY 338

Query:   348 QVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
             +V   LL   ++NP+ K   G T   +A ++
Sbjct:   339 KVAKVLLDK-KANPNAKALNGFTPLHIACKK 368

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX7 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 110/391 (28%), Positives = 180/391 (46%)

Query:     8 AYFEAAIRGNID---DFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQY 64
             +Y  AA  GN++   D+L S +   D++ I  +   +G + LH+A+K GH E+ +++ Q 
Sbjct:     2 SYLRAARAGNLEKALDYLKSGV---DIN-ISNQ---NGLNALHLASKEGHVEVVSELIQR 54

Query:    65 YPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTAL 124
                 ++    +G+T LH A+ AG+      LV    ++ + SQ     L M  A     L
Sbjct:    55 GAS-VDAATKKGNTALHIASLAGQAEVVKVLVTNRANVNAQSQNGFTPLYM--AAQENHL 111

Query:   125 HEALFML--GRVNVWRTSIAGSSLTMA----HSYFLSNPTLAIDDTIKTNIINSLVAIAY 178
                 F+L  G      T    + L +A    H   +S   L +++  K  +   L A+  
Sbjct:   112 EVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVS---LLLENDTKGKV--RLPALHI 166

Query:   179 FLVSLDPKLSCC-------KNIEDKS---PLSLAIEMGNTDVLEYIL-RSLPSGISWSSG 227
                  D K +          ++E KS   PL +A   GN +V   +L R      +  + 
Sbjct:   167 AARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNRGAAVDFTARND 226

Query:   228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPS 287
              +PL VA+K+ N  +  LL   G     K ++ L P+H   ++GH  V VE+L +   P 
Sbjct:   227 ITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQV-VEMLLDRGAPI 285

Query:   288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS 347
             L  T NG + LH A +  H + V+ +I+    N+ +D+V N    D  T LH+AA  GH 
Sbjct:   286 LSKTKNGLSPLHMATQGDHLNCVQLLIQ---HNVPVDDVTN----DYLTALHVAAHCGHY 338

Query:   348 QVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
             +V   LL   ++NP+ K   G T   +A ++
Sbjct:   339 KVAKVLLDK-KANPNAKALNGFTPLHIACKK 368

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	9e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 88.2 bits (219), Expect = 2e-21
 Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 9/116 (7%)

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
           ++++   P+HLA  NGH  V+  LL+          ++G   LH AAKNGH ++VK ++E
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
                      VN  D+DGNTPLHLAA +G+  VV  LL++G ++ + ++K G T 
Sbjct: 62  -------KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTP 109

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.4 bits (217), Expect = 6e-21
 Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 8/128 (6%)

Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           G++PL +A    +L V  LL  NG     K+ +   P+HLA KNGH  ++  LL++    
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66

Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +     +G   LH AA+NG+ D+VK +++  G +      VN  D+DG TPLHLAA +GH
Sbjct: 67  NA-RDKDGNTPLHLAARNGNLDVVKLLLKH-GAD------VNARDKDGRTPLHLAAKNGH 118

Query: 347 SQVVYALL 354
            +VV  LL
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.3 bits (183), Expect = 3e-16
 Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 2/125 (1%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSG-ISWSSGKSPLQVATKKRNLGVCYLLEVN 249
           ++ + ++PL LA   G+ +V++ +L +        + G++PL +A K  +L +  LL   
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM 309
           G     ++K+   P+HLA +NG+ + +V+LL +          +G   LH AAKNGH ++
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLD-VVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEV 121

Query: 310 VKAII 314
           VK ++
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
             ++G   LH AA NGH ++VK ++E           VN  D DG TPLHLAA +GH ++
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGA-------DVNAKDNDGRTPLHLAAKNGHLEI 55

Query: 350 VYALLRYGRSNPDLKNKQGMTAYKMALR 377
           V  LL  G ++ + ++K G T   +A R
Sbjct: 56  VKLLLEKG-ADVNARDKDGNTPLHLAAR 82

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 69.2 bits (170), Expect = 8e-15
 Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 11/102 (10%)

Query: 264 IHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTM 323
           +HLA KNG+  ++  LL++    +L  TD     LH AA+NG+ ++VK ++E        
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT---ALHLAARNGNLEIVKLLLE-------H 50

Query: 324 DEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKN 365
              VN  D+DGNT LHLAA +G+ ++V  LL +G ++ +LK+
Sbjct: 51  GADVNAKDKDGNTALHLAARNGNLEIVKLLLEHG-ADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 40  TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFA 99
            DG + LH+AAK+GH EI   + +     +N  +  G+TPLH AAR G L+    L+   
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96

Query: 100 KHIPSTSQAPVDLLRMENAMGNTALHEA 127
                        +   +  G T LH A
Sbjct: 97  -----------ADVNARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 296 NILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
             LH AA +G  ++VK ++E           +N+ DEDGNT LH+AA +G+ +V+  LL
Sbjct: 3   TALHKAAISGRLELVKYLLE-------KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 169 IINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW---- 224
             N  + +   L+     +   K+ + ++PL LA + G+ ++++ +L     G       
Sbjct: 15  ASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEK---GADVNARD 70

Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL 280
             G +PL +A +  NL V  LL  +G     ++K+   P+HLA KNGH  V+  LL
Sbjct: 71  KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
           DG + LH+AA +GH E+  K+       +N  +N G TPLH AA+ G L     L++   
Sbjct: 6   DGRTPLHLAASNGHLEV-VKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEA 127
            +              +  GNT LH A
Sbjct: 65  DV-----------NARDKDGNTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 245 LLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN 304
           L  +       ++ +   P+H A   G   + V+LL            +G   LH AA N
Sbjct: 58  LKLIVDRHLAARDLDGRLPLHSAASKGDDKI-VKLLLASGADVNAKDADGDTPLHLAALN 116

Query: 305 GH-----ADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS 359
           G+      ++ K ++E         +V N  DEDGNTPLH AAL+G + +V  LL  G +
Sbjct: 117 GNPPEGNIEVAKLLLEAGADL----DVNNLRDEDGNTPLHWAALNGDADIVELLLEAG-A 171

Query: 360 NPDLKNKQGMTAY 372
           +P+ +N  G+TA 
Sbjct: 172 DPNSRNSYGVTAL 184

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 328 NKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           N  DEDG TPLHLAA +GH +VV  LL  G ++ + K+  G T 
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTP 43

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 37/178 (20%), Positives = 58/178 (32%), Gaps = 54/178 (30%)

Query: 70  NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALF 129
           N  +  G TPLH AA  G L     L++    + +            +  G T LH A  
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-----------DNDGRTPLHLA-- 47

Query: 130 MLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSC 189
                                                    N  + I   L+     +  
Sbjct: 48  ---------------------------------------AKNGHLEIVKLLLEKGADV-N 67

Query: 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLL 246
            ++ +  +PL LA   GN DV++ +L+           G++PL +A K  +L V  LL
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
                +N  D +GNTPLHLAA +G  ++V  LL+ G  + +L++  G+TA  +A
Sbjct: 4   HGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG-VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNK 366
           DGNTPLHLAA +GH +VV  LL  G ++ + ++K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAG-ADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
          G + LH AA SG  E+   + +     IN+T+  G+T LH AA  G L     L+
Sbjct: 1  GRTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 199 LSLAIEMGNTDVLEYILRSLPSGISWSSGK--SPLQVATKKRNLGVC-YLLEVNGYSALK 255
           L LA + GN ++++ +L     G   + G   + L +A +  NL +   LLE +G     
Sbjct: 1   LHLAAKNGNLELVKLLLEK---GADVNLGDTDTALHLAARNGNLEIVKLLLE-HGADVNA 56

Query: 256 KNKETLYPIHLACKNGHANVMVELLKE 282
           K+K+    +HLA +NG+  + V+LL E
Sbjct: 57  KDKDGNTALHLAARNGNLEI-VKLLLE 82

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 14/150 (9%)

Query: 224 WSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH----ANVMVEL 279
              G+ PL  A  K +  +  LL  +G     K+ +   P+HLA  NG+       + +L
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 280 LKEWRCPS--LFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNT 336
           L E         + D   N  LH+AA NG AD+V+ ++E            N  +  G T
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD-------PNSRNSYGVT 182

Query: 337 PLHLAALHGHSQVVYALLRYGRSNPDLKNK 366
            L  AA +G  ++V  LL  G     LK  
Sbjct: 183 ALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
           DG++ LH+AA++G+ ++  K+   +   +N  +  G TPLH AA+ G L     L+
Sbjct: 72  DGNTPLHLAARNGNLDV-VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 38/215 (17%)

Query: 190 CKNI---EDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGK--SPLQVATKKRNLGVCY 244
           C NI   E  +PL  AI  G+  ++E  ++   + I+  + K   PL  A K     +  
Sbjct: 27  CINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLLTAIKIGAHDIIK 85

Query: 245 LLEVNGY--------------------SALK---KNKETLYPIHLACKNGHANVMVELLK 281
           LL  NG                       +    K+ E    +H A K G     +++L 
Sbjct: 86  LLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLES-IKMLF 144

Query: 282 EWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA 341
           E+        DNGC  +H A K+   D++K ++E            N  D +G +PLH A
Sbjct: 145 EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE-------KGAYANVKDNNGESPLHNA 197

Query: 342 ALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
           A +G    +  L+ +G ++   K K G T    A+
Sbjct: 198 AEYGDYACIKLLIDHG-NHIMNKCKNGFTPLHNAI 231

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 328 NKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR 377
           N  D DG TPLH+A  +GH QVV  LL +G ++P L +K G T  ++A  
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEE 157

Length = 664

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 14/82 (17%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPST 105
           LH+AAK+G+ E+   + +      +      DT LH AAR G L     L++    +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADV--- 54

Query: 106 SQAPVDLLRMENAMGNTALHEA 127
                     ++  GNTALH A
Sbjct: 55  --------NAKDKDGNTALHLA 68

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 12 AAIRGNID--DFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLI 69
          AA  GN++    L        L    +  L D  + LH+AA++G+ EI  K+   +   +
Sbjct: 4  AAKNGNLELVKLL--------LEKGADVNLGDTDTALHLAARNGNLEI-VKLLLEHGADV 54

Query: 70 NKTNNQGDTPLHCAARAGKLNTATALVD 97
          N  +  G+T LH AAR G L     L++
Sbjct: 55 NAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 21/189 (11%)

Query: 195 DKSPLSLAIEMGNTDVLEYILRS-LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSA 253
           D+  L  AI  G  D+   +L   +        G SP+++A K R+     LL  +G   
Sbjct: 2   DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP 61

Query: 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAI 313
             K  +    +H A + G    + ELL   +        +G   LH A      D++K +
Sbjct: 62  DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLL 121

Query: 314 I------EIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQ 367
           I      +IP T+               +PLHLA + G  + +  L+ + ++  D+++  
Sbjct: 122 IARGADPDIPNTDKF-------------SPLHLAVMMGDIKGIELLIDH-KACLDIEDCC 167

Query: 368 GMTAYKMAL 376
           G T   +A+
Sbjct: 168 GCTPLIIAM 176

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 48/215 (22%), Positives = 86/215 (40%), Gaps = 31/215 (14%)

Query: 150 HSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAI--EMGN 207
           +S   +N T     +     +  +  I   L+     ++   N    +PL  AI  +  +
Sbjct: 62  NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDN-NGITPLLYAISKKSNS 120

Query: 208 TDVLEYIL-RSLPSGISWSSGKSPLQVATK--KRNLGVCYLLEVNGYSALKKNKETLYPI 264
             ++EY+L       I  S G++ L +  +  K +L +  LL   G     KN+      
Sbjct: 121 YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR------ 174

Query: 265 HLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMD 324
                       V  L  +  P       G   LH+A  N + + VK ++++ G N    
Sbjct: 175 ------------VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL-GAN---- 217

Query: 325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS 359
              N +++ G+TPLH+A L+ + ++   LL  G S
Sbjct: 218 --PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 23/194 (11%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVN 249
           K+ E K+ L  AI+ G+ + ++ +        I   +G  P+ +A K     +  LL   
Sbjct: 120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK 179

Query: 250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM 309
           G  A  K+     P+H A + G          ++ C  L + D+G +I++   KNG   +
Sbjct: 180 GAYANVKDNNGESPLHNAAEYG----------DYACIKL-LIDHGNHIMN-KCKNGFTPL 227

Query: 310 VKAI------IEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDL 363
             AI      IE+   N +    +N  D DG+TPLH A        +  +L Y +++  +
Sbjct: 228 HNAIIHNRSAIELLINNAS----INDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI 283

Query: 364 KNKQGMTAYKMALR 377
           K+ +G      A +
Sbjct: 284 KDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 7/71 (9%)

Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
           +G   LH A  NGH  +V+ ++E  G + T+      +D+DG TPL LA  +G  +VV  
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEF-GADPTL------LDKDGKTPLELAEENGFREVVQL 166

Query: 353 LLRYGRSNPDL 363
           L R+ + + +L
Sbjct: 167 LSRHSQCHFEL 177

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
             G   LH+A +N    + + ++   G N      VN  D+  N+PLH A  H +  +V+
Sbjct: 166 HKGNTALHYATENKDQRLTELLL-SYGAN------VNIPDKTNNSPLHHAVKHYNKPIVH 218

Query: 352 ALLRYGRSNPDLKNKQGMT 370
            LL  G ++ D ++K G T
Sbjct: 219 ILLENG-ASTDARDKCGNT 236

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 25/174 (14%)

Query: 230 PLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLF 289
           PL  A + RNL V   L   G++  + +   L P+H+ CK  +   M E+++     S+F
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99

Query: 290 VTDNGCN-------------ILHFAAKNGHADMVKAIIEIPGTNMTMDEV---------- 326
            T                  IL    KN     +  I +    ++   E+          
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159

Query: 327 VNKMDED-GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREY 379
           +N  D   GNT LH A  +   ++   LL YG +N ++ +K   +    A++ Y
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYG-ANVNIPDKTNNSPLHHAVKHY 212

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)

Query: 293 NGCNILHFAAKNGHADMVKAIIEIPG-TNMTMDEVVNKMDEDGNTPLHLA 341
           NG   LH AAK G  ++V+ +++     N+         D DG T L LA
Sbjct: 15  NGNTPLHLAAKYGALELVQWLLKPGVDLNLR--------DSDGLTALDLA 56

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 333 DGNTPLHLAALHGHSQVVYALLRYGRS 359
           DG TPLHLAA +G+ +VV  LL  G  
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 49/246 (19%), Positives = 89/246 (36%), Gaps = 27/246 (10%)

Query: 158 TLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEY-ILR 216
             + DD I+  I   L++    +   D         +  + L  A E  +  + E  +  
Sbjct: 138 KKSKDDIIEAEITKLLLSYGADINMKDRH-------KGNTALHYATENKDQRLTELLLSY 190

Query: 217 SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLA---CKNGHA 273
                I   +  SPL  A K  N  + ++L  NG S   ++K    P+H++   CK+   
Sbjct: 191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD--Y 248

Query: 274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDED 333
           +++  LL+     +      G   LH + K+     +K ++E           +N ++  
Sbjct: 249 DILKLLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLLEYGAD-------INSLNSY 299

Query: 334 GNTPLHLAALHGHSQVVYALLRYG-----RSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388
             TPL  A        +  +L        R  PD+KN +G       +        I +K
Sbjct: 300 KLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCITSNKRLNQIKDK 359

Query: 389 QEKSMK 394
            E  + 
Sbjct: 360 CEDELN 365

Length = 477

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 15/25 (60%), Positives = 20/25 (80%)

Query: 333 DGNTPLHLAALHGHSQVVYALLRYG 357
           DGNTPLHLAA +G+ ++V  LL +G
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHG 25

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 196 KSPLSLAIEMGNTDVLEYILRS--LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSA 253
           +S L  A+E G+   +E +L        + +  G +PL +AT  + L +  LL   G   
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAI 313
              N +   P+HLA   G     +ELL + +         GC  L  A   G   + K +
Sbjct: 129 DIPNTDKFSPLHLAVMMGDIK-GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKML 187

Query: 314 IE 315
           ++
Sbjct: 188 LD 189

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02859	209	ankyrin repeat protein; Provisional	99.98
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.96
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.68
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.63
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.63
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.6
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.52
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.48
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.41
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.41
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.37
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.14
PF13606	30	Ank_3: Ankyrin repeat	99.1
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.09
PF13606	30	Ank_3: Ankyrin repeat	99.07
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.01
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.9
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.85
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.82
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.81
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.78
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.71
KOG0522	560	consensus Ankyrin repeat protein [General function	98.7
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.68
KOG0522	560	consensus Ankyrin repeat protein [General function	98.63
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.53
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.38
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.33
KOG0511	516	consensus Ankyrin repeat protein [General function	98.31
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.27
KOG2384	223	consensus Major histocompatibility complex protein	98.23
KOG0511	516	consensus Ankyrin repeat protein [General function	98.16
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.14
KOG2384	223	consensus Major histocompatibility complex protein	98.06
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.0
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.96
KOG2505	591	consensus Ankyrin repeat protein [General function	97.8
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.48
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.35
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.54
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.42
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.28
KOG2505	591	consensus Ankyrin repeat protein [General function	96.23
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.8
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.35
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.43

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-48  Score=366.16  Aligned_cols=349  Identities=18%  Similarity=0.127  Sum_probs=276.5

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHH-----------------------------------
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAA-----------------------------------   50 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~-----------------------------------   50 (394)
                      .|+||+|+..|+.+.|+......++.   +...|..|.||||+|+                                   
T Consensus        42 ~t~LH~A~~~g~~e~V~~ll~~~~~~---~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  118 (682)
T PHA02876         42 FTAIHQALQLRQIDIVEEIIQQNPEL---IYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLD  118 (682)
T ss_pred             chHHHHHHHHHhhhHHHHHHHhCccc---chhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHH
Confidence            79999999999999999955444443   4567888999999666                                   


Q ss_pred             -----------------------------------hcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHH
Q 040887           51 -----------------------------------KSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATAL   95 (394)
Q Consensus        51 -----------------------------------~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   95 (394)
                                                         ..|+.+++++|++.|+ +++.+|..|.||||+|+..|+.++|++|
T Consensus       119 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Ga-dvn~~d~~G~TpLh~Aa~~G~~~iv~~L  197 (682)
T PHA02876        119 EACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGA-DVNAKDIYCITPIHYAAERGNAKMVNLL  197 (682)
T ss_pred             HHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence                                               4577889999999976 7999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhh---------------------hhccc
Q 040887           96 VDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMA---------------------HSYFL  154 (394)
Q Consensus        96 l~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~  154 (394)
                      +++|++++           ..+..|.||+|.|+..+....+..++..+......                     .....
T Consensus       198 L~~Gad~n-----------~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~v  266 (682)
T PHA02876        198 LSYGADVN-----------IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSV  266 (682)
T ss_pred             HHCCCCcC-----------ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999975           34566889999998877655544433322211100                     00000


Q ss_pred             CCcccchhhhhhhhhhhhH-HHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC-CHHHHHHHHHhCCC-CCCCCCCCChH
Q 040887          155 SNPTLAIDDTIKTNIINSL-VAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMG-NTDVLEYILRSLPS-GISWSSGKSPL  231 (394)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~-~~~~~~~~~~l  231 (394)
                      .........++..++..+. ..++++|++.|.+++ .++..|.||||+|+..| ..++++.|+..+.. +..+..|.|||
T Consensus       267 n~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin-~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpL  345 (682)
T PHA02876        267 NSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVN-AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPL  345 (682)
T ss_pred             CCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHH
Confidence            0111122345555555444 368888888888877 57778899999999888 58888888876543 66677888999


Q ss_pred             HHHHhcC-CHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCC-HHH
Q 040887          232 QVATKKR-NLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGH-ADM  309 (394)
Q Consensus       232 ~~a~~~~-~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~  309 (394)
                      |+|+..+ ..+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+++. +..+..|.||||+|+..++ ..+
T Consensus       346 h~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~~~~~~~~  424 (682)
T PHA02876        346 HQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALCGTNPYMS  424 (682)
T ss_pred             HHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHHcCCHHHH
Confidence            9998865 568889999999999999999999999999999999999999887766 7788889999999987655 567


Q ss_pred             HHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887          310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG-HSQVVYALLRYGRSNPDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       310 ~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~  379 (394)
                      +++|++.|++       +|.+|..|+||||+|+..+ +.+++++|++.| +|++.+|..|.||+++|+..+
T Consensus       425 vk~Ll~~gad-------in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~G-ad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        425 VKTLIDRGAN-------VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNG-ADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             HHHHHhCCCC-------CCcCCCCCChHHHHHHHhCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhC
Confidence            8999999988       9999999999999999876 689999999999 999999999999999998653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.6e-47  Score=339.68  Aligned_cols=296  Identities=20%  Similarity=0.210  Sum_probs=257.3

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      +..|..|+..||++.++.....+...   ++..+.+|.||||.|+..|+.++|++|++.|+ +++..+..|.||||+|+.
T Consensus         2 ~~~l~~ai~~gd~~~v~~ll~~~~~~---~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga-~~n~~~~~~~t~L~~A~~   77 (434)
T PHA02874          2 SQDLRMCIYSGDIEAIEKIIKNKGNC---INISVDETTTPLIDAIRSGDAKIVELFIKHGA-DINHINTKIPHPLLTAIK   77 (434)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHH
Confidence            46899999999999999944332221   35578889999999999999999999999976 789999999999999999


Q ss_pred             cCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887           86 AGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI  165 (394)
Q Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (394)
                      .|+.+++++|++.|+++....                   ...                                     
T Consensus        78 ~~~~~iv~~Ll~~g~~~~~~~-------------------~~~-------------------------------------  101 (434)
T PHA02874         78 IGAHDIIKLLIDNGVDTSILP-------------------IPC-------------------------------------  101 (434)
T ss_pred             cCCHHHHHHHHHCCCCCCcch-------------------hcc-------------------------------------
Confidence            999999999999998752110                   000                                     


Q ss_pred             hhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHH
Q 040887          166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCY  244 (394)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~  244 (394)
                            ...++++.+++.|.+++ .++..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.++++
T Consensus       102 ------~~~~~i~~ll~~g~d~n-~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~  174 (434)
T PHA02874        102 ------IEKDMIKTILDCGIDVN-IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIK  174 (434)
T ss_pred             ------CCHHHHHHHHHCcCCCC-CCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHH
Confidence                  01178899999999987 5788899999999999999999999997644 667788999999999999999999


Q ss_pred             HHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcch
Q 040887          245 LLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMD  324 (394)
Q Consensus       245 ~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  324 (394)
                      +|++.|++++..+..|.||||+|+..|+.+++++|++.++.. +.++..|.||||+|+..+. +.+++|+ .|++     
T Consensus       175 ~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-----  246 (434)
T PHA02874        175 LLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-----  246 (434)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-----
Confidence            999999999999999999999999999999999999988766 7788899999999998765 5677776 5777     


Q ss_pred             hhccccCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887          325 EVVNKMDEDGNTPLHLAALHG-HSQVVYALLRYGRSNPDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       325 ~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~  379 (394)
                        ++.+|..|+||||+|+..+ +.+++++|+++| +|++.+|..|.|||++|++.+
T Consensus       247 --in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~g-ad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        247 --INDQDIDGSTPLHHAINPPCDIDIIDILLYHK-ADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             --CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHhC
Confidence              8999999999999999875 789999999999 999999999999999999876

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.6e-47  Score=336.81  Aligned_cols=281  Identities=18%  Similarity=0.136  Sum_probs=206.4

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcC--cHHHHHHHHhhccCCCCCCCCcchhh
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG--KLNTATALVDFAKHIPSTSQAPVDLL  113 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~~~~~~  113 (394)
                      +.+|.+|.||||+||..|+.+++++|+++|+ +++.+|..|+||||+|+..+  ..+++++|+++|++++          
T Consensus        66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GA-din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin----------  134 (446)
T PHA02946         66 NETDDDGNYPLHIASKINNNRIVAMLLTHGA-DPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN----------  134 (446)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHCcC-CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc----------
Confidence            3355555555555555555555555555543 45555555555555554433  2455555555555542          


Q ss_pred             hhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCC
Q 040887          114 RMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNI  193 (394)
Q Consensus       114 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  193 (394)
                      ...+..|.|||+.+                                          ..+..+++++|++.|.+++ .++.
T Consensus       135 ~~~d~~g~tpL~aa------------------------------------------~~~~~~vv~~Ll~~gad~~-~~d~  171 (446)
T PHA02946        135 NSVDEEGCGPLLAC------------------------------------------TDPSERVFKKIMSIGFEAR-IVDK  171 (446)
T ss_pred             cccCCCCCcHHHHH------------------------------------------HCCChHHHHHHHhcccccc-ccCC
Confidence            11233455555422                                          2233489999999999887 6888


Q ss_pred             CCCcHHHHHHHcCC--HHHHHHHHHhCCC-CCCCCCCCChHHHHHhcC--CHHHHHHHHhcCccccccCCCCCcHHHHHH
Q 040887          194 EDKSPLSLAIEMGN--TDVLEYILRSLPS-GISWSSGKSPLQVATKKR--NLGVCYLLEVNGYSALKKNKETLYPIHLAC  268 (394)
Q Consensus       194 ~~~~~l~~a~~~~~--~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~  268 (394)
                      .|+||||+|+..++  .+++++|++.+.. +..+..|.||||+|+..+  +.+++++|+. |++++.++..|.||||+|+
T Consensus       172 ~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~  250 (446)
T PHA02946        172 FGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLI  250 (446)
T ss_pred             CCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            99999999887554  6899999987654 566789999999999886  6688888885 8999999999999999999


Q ss_pred             HcCC-HHHHHHHHHhcCCCC-------------------ccc-cCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhc
Q 040887          269 KNGH-ANVMVELLKEWRCPS-------------------LFV-TDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVV  327 (394)
Q Consensus       269 ~~~~-~~~v~~Ll~~~~~~~-------------------~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  327 (394)
                      ..++ .++++.|+..+....                   +.. ...|.||||+|+.+|+.+++++|+++|+         
T Consensus       251 ~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~---------  321 (446)
T PHA02946        251 KTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI---------  321 (446)
T ss_pred             HhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC---------
Confidence            9988 478888888764321                   111 1347799999999999999999999773         


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887          328 NKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE  387 (394)
Q Consensus       328 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~  387 (394)
                           .|+||||+|+..++.+++++|+.+| ++++.+ .+|.||+++|++.++.+..-..
T Consensus       322 -----~~~t~L~~A~~~~~~~~v~~Ll~~g-a~~n~~-~~G~t~l~~a~~~~~~~~~~~l  374 (446)
T PHA02946        322 -----ICEDAMYYAVLSEYETMVDYLLFNH-FSVDSV-VNGHTCMSECVRLNNPVILSKL  374 (446)
T ss_pred             -----ccccHHHHHHHhCHHHHHHHHHHCC-CCCCCc-cccccHHHHHHHcCCHHHHHHH
Confidence                 4589999999999999999999999 999996 5899999999999987765433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-47  Score=334.72  Aligned_cols=311  Identities=25%  Similarity=0.295  Sum_probs=221.8

Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhh
Q 040887           38 VLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMEN  117 (394)
Q Consensus        38 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  117 (394)
                      .|..|+||||+|+.....+.+++|++.|+ +....+..+.+|+|+|+..+++++++.|+++|+|+           +..|
T Consensus        84 ~D~~~n~~l~~a~~~~~~~~i~~Lls~ga-d~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dv-----------nl~d  151 (929)
T KOG0510|consen   84 KDSADNTPLHAAVEYNQGDKIQVLLSYGA-DTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADV-----------NLED  151 (929)
T ss_pred             hhcccCchhHHHhhcchHHHHHHHHhcCC-CCChhhhhccCchhhccccchHHHHHHHHHhcCCc-----------cccc
Confidence            44444555555555555555555554433 34444444555555555555555555555555443           2334


Q ss_pred             hcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHh-----cCCCCccccC
Q 040887          118 AMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVS-----LDPKLSCCKN  192 (394)
Q Consensus       118 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~  192 (394)
                      ..+.||||.|+..+... ..+.+++....       .+.+......+++.+...+..+..+..+.     .+..++ ..+
T Consensus       152 e~~~TpLh~A~~~~~~E-~~k~Li~~~a~-------~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-~~~  222 (929)
T KOG0510|consen  152 ENGFTPLHLAARKNKVE-AKKELINKGAD-------PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN-FDN  222 (929)
T ss_pred             cCCCchhhHHHhcChHH-HHHHHHhcCCC-------CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc-ccc
Confidence            44455555554444333 11111111100       01111111222344444444566666666     455555 566


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCC----------------CCCCCCCCChHHHHHhcCCHHHHHHHHhcCcccccc
Q 040887          193 IEDKSPLSLAIEMGNTDVLEYILRSLPS----------------GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKK  256 (394)
Q Consensus       193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~----------------~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~  256 (394)
                      ..+.+|||.|+..|+.++++.+++.+..                +..+..|.||||+|++.|..+.+..|+..|++++.+
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k  302 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK  302 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc
Confidence            7889999999999999999999987544                445688999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-hcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC
Q 040887          257 NKETLYPIHLACKNGHANVMVELLK-EWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN  335 (394)
Q Consensus       257 ~~~g~~~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~  335 (394)
                      +.++.||||.|+++|+.+.++.|++ .+....+..|-.|.||||.|++.|+..+++.|++.|+....++    ..|.+|+
T Consensus       303 n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~----e~D~dg~  378 (929)
T KOG0510|consen  303 NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMS----EADSDGN  378 (929)
T ss_pred             CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccc----ccccCCc
Confidence            9999999999999999999999999 6666778889999999999999999999999999999842111    4599999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHH
Q 040887          336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKM  374 (394)
Q Consensus       336 t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~  374 (394)
                      ||||.|++.|+..+|++|+.+| |++..+|..|.|++++
T Consensus       379 TaLH~Aa~~g~~~av~~Li~~G-a~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  379 TALHLAAKYGNTSAVQKLISHG-ADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhhhHHHHhccHHHHHHHHHcC-Cceeeccccccccccc
Confidence            9999999999999999999999 9999999999999995

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-45  Score=345.97  Aligned_cols=348  Identities=18%  Similarity=0.136  Sum_probs=281.1

Q ss_pred             HHHHHHHHhccchhhhh------ccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHH
Q 040887            7 PAYFEAAIRGNIDDFLF------SDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPL   80 (394)
Q Consensus         7 ~~l~~a~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   80 (394)
                      ..|..++..|+.+.+..      ....+.+.    ...+..+.||||+||..|+.++|+.|++..+..++..|..|.|||
T Consensus         4 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpL   79 (682)
T PHA02876          4 DDLYRIMCRGNCIDILSAIDNYDLHKHGANQ----CENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTL   79 (682)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhhhhhh----cccccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhcccc
Confidence            36888899999876554      11111111    223677999999999999999999999999877888999999999


Q ss_pred             HHHH----------------------------------------------------------------------HcCcHH
Q 040887           81 HCAA----------------------------------------------------------------------RAGKLN   90 (394)
Q Consensus        81 ~~A~----------------------------------------------------------------------~~~~~~   90 (394)
                      |+|+                                                                      ..++.+
T Consensus        80 h~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  159 (682)
T PHA02876         80 HTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELL  159 (682)
T ss_pred             ccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHH
Confidence            9666                                                                      446789


Q ss_pred             HHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCC--------------
Q 040887           91 TATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSN--------------  156 (394)
Q Consensus        91 ~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  156 (394)
                      ++++|++.|++++           .+|..|.||||.|+..+....+..++..+.........-.+.              
T Consensus       160 i~k~Ll~~Gadvn-----------~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk  228 (682)
T PHA02876        160 IAEMLLEGGADVN-----------AKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIK  228 (682)
T ss_pred             HHHHHHhCCCCCC-----------CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999974           457779999999999998877777776665433211100000              


Q ss_pred             -------cccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCH-HHHHHHHHhCCC-CCCCCCC
Q 040887          157 -------PTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNT-DVLEYILRSLPS-GISWSSG  227 (394)
Q Consensus       157 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~-~~~~~~~  227 (394)
                             ........+..++..+..+.+++|++.|.+++ ..+..|.||||+|+..++. +++++|++.+.. +..+..|
T Consensus       229 ~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn-~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g  307 (682)
T PHA02876        229 AIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVN-SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKG  307 (682)
T ss_pred             HHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCC
Confidence                   00011122344555566777888888888877 5677899999999999986 588999887644 6677889


Q ss_pred             CChHHHHHhcCC-HHHHHHHHhcCccccccCCCCCcHHHHHHHcC-CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887          228 KSPLQVATKKRN-LGVCYLLEVNGYSALKKNKETLYPIHLACKNG-HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG  305 (394)
Q Consensus       228 ~~~l~~a~~~~~-~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  305 (394)
                      .||||+|+..|. .+++++|+..|++++..+..|.||||+|+..+ ..+++..|++.+.+. +.+|..|.||||+|+..|
T Consensus       308 ~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~  386 (682)
T PHA02876        308 ETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRN  386 (682)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcC
Confidence            999999999994 79999999999999999999999999999864 677888888776665 889999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCC-HHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887          306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH-SQVVYALLRYGRSNPDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~  379 (394)
                      +.+++++|+++|++       ++..+..|.||||+|+..++ ..++++|++.| ++++.+|..|+||||+|+..+
T Consensus       387 ~~~iv~~Ll~~gad-------~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-adin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        387 NVVIINTLLDYGAD-------IEALSQKIGTALHFALCGTNPYMSVKTLIDRG-ANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             CHHHHHHHHHCCCC-------ccccCCCCCchHHHHHHcCCHHHHHHHHHhCC-CCCCcCCCCCChHHHHHHHhC
Confidence            99999999999999       89999999999999998766 46799999999 999999999999999999876

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.9e-44  Score=317.55  Aligned_cols=307  Identities=17%  Similarity=0.138  Sum_probs=251.5

Q ss_pred             HHHHHHHhccchhhhhccCCccchhhHhhhcCCCC-chHHHHHHh--cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887            8 AYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDG-SSLLHVAAK--SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA   84 (394)
Q Consensus         8 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   84 (394)
                      +++.++..++.+.++...          ....+.| .++||.++.  .++.+++++|+++|. +++.+|..|+||||+|+
T Consensus        12 sl~~~~~~~n~~~~~~~l----------~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Ga-dvn~~d~~G~TpLh~Aa   80 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNML----------QAIEPSGNYHILHAYCGIKGLDERFVEELLHRGY-SPNETDDDGNYPLHIAS   80 (446)
T ss_pred             HHHHHHccCcHHHHHHHH----------hccCCCCCChHHHHHHHhcCCCHHHHHHHHHCcC-CCCccCCCCCCHHHHHH
Confidence            456677777777777622          2233344 699998774  446799999999976 79999999999999999


Q ss_pred             HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhh
Q 040887           85 RAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT  164 (394)
Q Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (394)
                      ..|+.+++++|+++|++++           .+|..|.||||+|+..+.                                
T Consensus        81 ~~g~~eiv~lLL~~GAdin-----------~~d~~g~TpLh~A~~~~~--------------------------------  117 (446)
T PHA02946         81 KINNNRIVAMLLTHGADPN-----------ACDKQHKTPLYYLSGTDD--------------------------------  117 (446)
T ss_pred             HcCCHHHHHHHHHCcCCCC-----------CCCCCCCCHHHHHHHcCC--------------------------------
Confidence            9999999999999999974           457789999999875431                                


Q ss_pred             hhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCC--HH
Q 040887          165 IKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRN--LG  241 (394)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~--~~  241 (394)
                             ...+++++|++.|++++...+..|.|||+ |+..++.+++++|++.+.. +..+..|.||||.|+..++  .+
T Consensus       118 -------~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~  189 (446)
T PHA02946        118 -------EVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKAS  189 (446)
T ss_pred             -------chHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHH
Confidence                   12288999999999998778889999997 7777999999999987644 6778899999999987665  48


Q ss_pred             HHHHHHhcCccccccCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCC-HHHHHHHHhCCC
Q 040887          242 VCYLLEVNGYSALKKNKETLYPIHLACKNG--HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGH-ADMVKAIIEIPG  318 (394)
Q Consensus       242 ~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~~~  318 (394)
                      ++++|++.|++++.++..|.||||+|+..+  +.+++++|+. + .+++.+|..|.||||+|+..++ .+++++|+++|+
T Consensus       190 ~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        190 TISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            999999999999999999999999999986  7889998885 4 5568999999999999999988 589999999987


Q ss_pred             CCCcch-------------hhccccC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          319 TNMTMD-------------EVVNKMD-EDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       319 ~~~~~~-------------~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      ......             .+++.++ ..|+||||+|+..|+.+++++|+++| +       .|+||||+|+..++.+..
T Consensus       268 ~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~-~-------~~~t~L~~A~~~~~~~~v  339 (446)
T PHA02946        268 VITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND-I-------ICEDAMYYAVLSEYETMV  339 (446)
T ss_pred             CCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC-C-------ccccHHHHHHHhCHHHHH
Confidence            521110             1123332 36789999999999999999999987 4       479999999999987665


Q ss_pred             hh
Q 040887          385 IA  386 (394)
Q Consensus       385 ~~  386 (394)
                      -.
T Consensus       340 ~~  341 (446)
T PHA02946        340 DY  341 (446)
T ss_pred             HH
Confidence            43

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.2e-44  Score=328.10  Aligned_cols=337  Identities=16%  Similarity=0.098  Sum_probs=245.4

Q ss_pred             HhccchhhhhccCCc-cchhhHhhhc-CCCCchHHHHHHh--cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCc-
Q 040887           14 IRGNIDDFLFSDIPK-QDLHHIFEKV-LTDGSSLLHVAAK--SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGK-   88 (394)
Q Consensus        14 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-   88 (394)
                      ..++.+.++++...+ .++    +.+ |..|.||||+|+.  .++.+++++|+++|+ +++.+|..|.||||+|+..|+ 
T Consensus       151 ~~v~leiVk~LLe~G~ADI----N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GA-DVN~kD~~G~TPLH~Aa~~g~~  225 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNL----NYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGV-NVNLQNNHLITPLHTYLITGNV  225 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCc----ccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCC
Confidence            468889999866665 555    556 8899999999865  467899999999975 899999999999999999995 


Q ss_pred             -HHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHh--CccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887           89 -LNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFML--GRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI  165 (394)
Q Consensus        89 -~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (394)
                       .++|++|+++||+++           .++..|.||||.|+...  ....+...+......    ...  ..........
T Consensus       226 ~~eIVklLLe~GADVN-----------~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~----n~~--~~~~~~L~~~  288 (764)
T PHA02716        226 CASVIKKIIELGGDMD-----------MKCVNGMSPIMTYIINIDNINPEITNIYIESLDG----NKV--KNIPMILHSY  288 (764)
T ss_pred             CHHHHHHHHHcCCCCC-----------CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccc----ccc--ccchhhhHHH
Confidence             599999999999984           45778999999886532  111111111110000    000  0000011112


Q ss_pred             hhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHh------
Q 040887          166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIE--MGNTDVLEYILRSLPS-GISWSSGKSPLQVATK------  236 (394)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~------  236 (394)
                      ..+...+..+++++|++.|++++ .++..|+||||+|+.  .++.+++++|++.+.. +..+..|.||||.|+.      
T Consensus       289 i~AA~~g~leiVklLLe~GAdIN-~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~  367 (764)
T PHA02716        289 ITLARNIDISVVYSFLQPGVKLH-YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVN  367 (764)
T ss_pred             HHHHHcCCHHHHHHHHhCCCcee-ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhc
Confidence            23455667899999999999987 678899999998764  4678999999987654 5677889999999865      


Q ss_pred             --------cCCHHHHHHHHhcCccccccCCCCCcHHHH----HHHcCCHHHHHHHHHhcCCCCc-------cccCCCchH
Q 040887          237 --------KRNLGVCYLLEVNGYSALKKNKETLYPIHL----ACKNGHANVMVELLKEWRCPSL-------FVTDNGCNI  297 (394)
Q Consensus       237 --------~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~----a~~~~~~~~v~~Ll~~~~~~~~-------~~~~~g~t~  297 (394)
                              .++.+++++|++.|++++.++..|.||||.    |...++.+++++|+..+.....       .....+.+|
T Consensus       368 ~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~  447 (764)
T PHA02716        368 ILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTP  447 (764)
T ss_pred             cccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcch
Confidence                    256799999999999999999999999994    2335778999999986533210       011122333


Q ss_pred             --HHHHHHcCCHHHHH------------------HHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCH-----HHHHH
Q 040887          298 --LHFAAKNGHADMVK------------------AIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS-----QVVYA  352 (394)
Q Consensus       298 --L~~A~~~~~~~~~~------------------~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-----~~~~~  352 (394)
                        +|.++..++.++..                  .++..+.+       +|.+|..|+||||+|+..|+.     +++++
T Consensus       448 ~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~n-------vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~  520 (764)
T PHA02716        448 CIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYN-------NAVCETSGMTPLHVSIISHTNANIVMDSFVY  520 (764)
T ss_pred             hhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcc-------ccccCCCCCCHHHHHHHcCCccchhHHHHHH
Confidence              55555544433332                  23333333       678889999999999998876     45599


Q ss_pred             HHhcCCCCCCCcccCCCcHHHHHHhhhhc
Q 040887          353 LLRYGRSNPDLKNKQGMTAYKMALREYYM  381 (394)
Q Consensus       353 Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~  381 (394)
                      |++.| +|++.+|.+|+||||+|+++|+.
T Consensus       521 LL~~G-ADIN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        521 LLSIQ-YNINIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             HHhCC-CCCcccCCCCCCHHHHHHHcCCc
Confidence            99999 99999999999999999999876

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-43  Score=317.13  Aligned_cols=353  Identities=14%  Similarity=0.031  Sum_probs=270.8

Q ss_pred             CCHHHHHHHHhc---cchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcC--CHHHHHHHHHhCC-CCcccccCCCCC
Q 040887            5 LDPAYFEAAIRG---NIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSG--HGEITAKIAQYYP-FLINKTNNQGDT   78 (394)
Q Consensus         5 ~~~~l~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~-~~~~~~~~~g~t   78 (394)
                      -+||||+|+.+|   +.+.++.+...++++    +.+|.+|+||||+|+..|  +.++|++|++.|. .+++..+..+.+
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs~GAdi----n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~  116 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLSRGVER----LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDF  116 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHhCCCCC----cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCc
Confidence            479999999987   488899877778877    678999999999999866  7899999999863 345667777899


Q ss_pred             HHHHHHH--cCcHHHHHHHHh-hccCCCCCCCCcchhhhhhh-hcCCcHHHHHHHHhCccceeeecccCCchhhh--hhc
Q 040887           79 PLHCAAR--AGKLNTATALVD-FAKHIPSTSQAPVDLLRMEN-AMGNTALHEALFMLGRVNVWRTSIAGSSLTMA--HSY  152 (394)
Q Consensus        79 ~L~~A~~--~~~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~--~~~  152 (394)
                      |||.++.  +++.+++++|++ .+++++...       +..+ ..|.+|++.+...+....+..++..+....-.  ...
T Consensus       117 ~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~-------~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        117 DLYSYMSSDNIDLRLLKYLIVDKRIRPSKNT-------NYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHhcCCChhhhh-------hhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            9999888  888999999996 667765321       1112 26789999999888888888777777665211  001


Q ss_pred             -ccCCcccchhh---hhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHH--HHHcCCHHHHHHHHH----------
Q 040887          153 -FLSNPTLAIDD---TIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSL--AIEMGNTDVLEYILR----------  216 (394)
Q Consensus       153 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~--a~~~~~~~~~~~ll~----------  216 (394)
                       ...+.......   ...........+++++|+++|++++ .++..|.||||+  +...++.+++++|++          
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN-~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~  268 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIH-GRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDD  268 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccc
Confidence             11111100000   0011245667899999999999998 789999999995  555667999999998          


Q ss_pred             ----------------------hCCCC-C--------------------CCCCCCC---------------------hHH
Q 040887          217 ----------------------SLPSG-I--------------------SWSSGKS---------------------PLQ  232 (394)
Q Consensus       217 ----------------------~~~~~-~--------------------~~~~~~~---------------------~l~  232 (394)
                                            .+.+. .                    .+..|.+                     .|+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~  348 (672)
T PHA02730        269 ISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLI  348 (672)
T ss_pred             ccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHH
Confidence                                  11110 1                    2334433                     556


Q ss_pred             HHHhcC---CHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC----HHHHHHHHHhcCC-CCccccCCCchHHHH---H
Q 040887          233 VATKKR---NLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH----ANVMVELLKEWRC-PSLFVTDNGCNILHF---A  301 (394)
Q Consensus       233 ~a~~~~---~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~----~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~---A  301 (394)
                      .-...+   +.+++++|+++|++++.. ..|.||||+|+..++    .+++++|+++++. +++.+|..|.||||.   |
T Consensus       349 ~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a  427 (672)
T PHA02730        349 NYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILS  427 (672)
T ss_pred             HHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHH
Confidence            666655   349999999999999986 799999999998875    8999999999873 568889999999984   3


Q ss_pred             HHcC---------CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCccc-CCCcH
Q 040887          302 AKNG---------HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNK-QGMTA  371 (394)
Q Consensus       302 ~~~~---------~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~-~g~t~  371 (394)
                      ...+         ..+++++|+++|++       +|.+|..|+||||+|+..++.+++++|+++| |+++.++. .|.||
T Consensus       428 ~~~n~~~~~~e~~~~~ivk~LIs~GAD-------INakD~~G~TPLh~Aa~~~~~eive~LI~~G-AdIN~~d~~~g~Ta  499 (672)
T PHA02730        428 RFNNCGYHCYETILIDVFDILSKYMDD-------IDMIDNENKTLLYYAVDVNNIQFARRLLEYG-ASVNTTSRSIINTA  499 (672)
T ss_pred             HhccccccccchhHHHHHHHHHhcccc-------hhccCCCCCCHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCcCCcCH
Confidence            3232         23679999999999       9999999999999999999999999999999 99999997 59999


Q ss_pred             HHHHHhh
Q 040887          372 YKMALRE  378 (394)
Q Consensus       372 l~~a~~~  378 (394)
                      +++|+..
T Consensus       500 L~~Aa~~  506 (672)
T PHA02730        500 IQKSSYR  506 (672)
T ss_pred             HHHHHHh
Confidence            9999874

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.9e-44  Score=324.90  Aligned_cols=289  Identities=17%  Similarity=0.182  Sum_probs=254.1

Q ss_pred             HHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcC---CHHHHHHHHHhCCCCcccccCCCCCHHHHHHHc
Q 040887           10 FEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSG---HGEITAKIAQYYPFLINKTNNQGDTPLHCAARA   86 (394)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~   86 (394)
                      ..++..++++.++++...+.++    +..+..|.||||+|+..|   +.+++++|++.|+ +++.++..|.||||+|+..
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~v----n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga-din~~~~~g~TpLh~A~~~   93 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADV----NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA-DVNAPERCGFTPLHLYLYN   93 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCc----ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHc
Confidence            5678889999999966666665    678999999999999999   9999999999976 7999999999999999999


Q ss_pred             C-cHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887           87 G-KLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI  165 (394)
Q Consensus        87 ~-~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (394)
                      | +.+++++|+++|++++           ..+..|.||||.|+...                                  
T Consensus        94 ~~~~~iv~lLl~~ga~in-----------~~~~~g~tpLh~a~~~~----------------------------------  128 (471)
T PHA03095         94 ATTLDVIKLLIKAGADVN-----------AKDKVGRTPLHVYLSGF----------------------------------  128 (471)
T ss_pred             CCcHHHHHHHHHcCCCCC-----------CCCCCCCCHHHHHhhCC----------------------------------
Confidence            9 5999999999999974           45677999999998322                                  


Q ss_pred             hhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHhCCC-CCCCCCCCChHHHHHhc--CCH
Q 040887          166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMG--NTDVLEYILRSLPS-GISWSSGKSPLQVATKK--RNL  240 (394)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~--~~~  240 (394)
                           ....+++++|++.|.+++ ..+..|.||||+|+..+  +.+++++|++.+.. ...+..|.||||.++..  +..
T Consensus       129 -----~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~  202 (471)
T PHA03095        129 -----NINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRA  202 (471)
T ss_pred             -----cCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcH
Confidence                 011289999999999988 67889999999998866  68999999997655 44478899999999876  566


Q ss_pred             HHHHHHHhcCccccccCCCCCcHHHHHHHcCCH--HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCC
Q 040887          241 GVCYLLEVNGYSALKKNKETLYPIHLACKNGHA--NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPG  318 (394)
Q Consensus       241 ~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~--~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  318 (394)
                      .+++.|++.|++++.++..|.||||+|+..|..  .++..|++.+.+. +.+|..|+||||+|+..|+.+++++|++.|+
T Consensus       203 ~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~~LL~~ga  281 (471)
T PHA03095        203 RIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPRACRRLIALGA  281 (471)
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999875  5777888876655 8899999999999999999999999999999


Q ss_pred             CCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 040887          319 TNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDL  363 (394)
Q Consensus       319 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~  363 (394)
                      +       ++.+|.+|+||||+|+..|+.+++++|++.+ ++++.
T Consensus       282 d-------~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~-~~~~~  318 (471)
T PHA03095        282 D-------INAVSSDGNTPLSLMVRNNNGRAVRAALAKN-PSAET  318 (471)
T ss_pred             C-------CcccCCCCCCHHHHHHHhCCHHHHHHHHHhC-CCHHH
Confidence            9       9999999999999999999999999999998 77753

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-42  Score=315.04  Aligned_cols=277  Identities=20%  Similarity=0.224  Sum_probs=249.2

Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcC---cHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcH
Q 040887           47 HVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG---KLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTA  123 (394)
Q Consensus        47 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~  123 (394)
                      ..++..++.++|++|++.|+ +++..+..|.||||+|+..+   +.+++++|++.|++++           ..+..|.||
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga-~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin-----------~~~~~g~Tp   86 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGA-DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN-----------APERCGFTP   86 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCC-CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCC-----------CCCCCCCCH
Confidence            55677899999999999965 79999999999999999999   9999999999999974           445679999


Q ss_pred             HHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 040887          124 LHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAI  203 (394)
Q Consensus       124 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  203 (394)
                      ||.|+..+.                                        ..+++++|++.|.+++ .++..|.||||+|+
T Consensus        87 Lh~A~~~~~----------------------------------------~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~  125 (471)
T PHA03095         87 LHLYLYNAT----------------------------------------TLDVIKLLIKAGADVN-AKDKVGRTPLHVYL  125 (471)
T ss_pred             HHHHHHcCC----------------------------------------cHHHHHHHHHcCCCCC-CCCCCCCCHHHHHh
Confidence            999998762                                        2389999999999988 68888999999999


Q ss_pred             --HcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcC--CHHHHHHHHhcCccccccCCCCCcHHHHHHHc--CCHHHH
Q 040887          204 --EMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKR--NLGVCYLLEVNGYSALKKNKETLYPIHLACKN--GHANVM  276 (394)
Q Consensus       204 --~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~--~~~~~v  276 (394)
                        ..++.+++++|++.+.. +..+..|.||||+|+..+  ..+++++|++.|++++..+..|.||||.++..  +..+++
T Consensus       126 ~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~  205 (471)
T PHA03095        126 SGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIV  205 (471)
T ss_pred             hCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHH
Confidence              55688999999998654 667788999999998876  46999999999999999999999999999875  778999


Q ss_pred             HHHHHhcCCCCccccCCCchHHHHHHHcCCH--HHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887          277 VELLKEWRCPSLFVTDNGCNILHFAAKNGHA--DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL  354 (394)
Q Consensus       277 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  354 (394)
                      +.|++.+.++ +.+|..|+||||+|+..++.  .+++.|++.|++       +|.+|..|+||||+|+..|+.+++++|+
T Consensus       206 ~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-------in~~d~~g~TpLh~A~~~~~~~~v~~LL  277 (471)
T PHA03095        206 RELIRAGCDP-AATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-------INARNRYGQTPLHYAAVFNNPRACRRLI  277 (471)
T ss_pred             HHHHHcCCCC-cccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999987776 88999999999999999875  689999999999       9999999999999999999999999999


Q ss_pred             hcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887          355 RYGRSNPDLKNKQGMTAYKMALREYYMQTSI  385 (394)
Q Consensus       355 ~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~  385 (394)
                      +.| +|++.+|..|.|||++|+..|+.+...
T Consensus       278 ~~g-ad~n~~~~~g~tpl~~A~~~~~~~~v~  307 (471)
T PHA03095        278 ALG-ADINAVSSDGNTPLSLMVRNNNGRAVR  307 (471)
T ss_pred             HcC-CCCcccCCCCCCHHHHHHHhCCHHHHH
Confidence            999 999999999999999999998876653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.4e-43  Score=306.49  Aligned_cols=314  Identities=20%  Similarity=0.200  Sum_probs=262.4

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM  115 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  115 (394)
                      ..++..|.|++|.|+..+..      ++. .......|..|.||||+|+.....+.+++|++.|+++           ..
T Consensus        55 ~~~~~~gd~~~~~~~~~~y~------~~~-~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~-----------~~  116 (929)
T KOG0510|consen   55 PGKRAFGDTELHHASARNYI------LSK-LAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADT-----------PL  116 (929)
T ss_pred             chhhhhchhHHHHHHhhcch------hhh-hhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCC-----------Ch
Confidence            34788899999999998866      222 1245667899999999999999999999999999997           57


Q ss_pred             hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887          116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED  195 (394)
Q Consensus       116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  195 (394)
                      .+..+.+|+|.|+..+.......++..+.+....        ......++..++..+..+..+.|++.|.++. +.+.+|
T Consensus       117 ~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~--------de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~  187 (929)
T KOG0510|consen  117 RNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLE--------DENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDG  187 (929)
T ss_pred             hhhhccCchhhccccchHHHHHHHHHhcCCcccc--------ccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcC
Confidence            7888999999999876544444444433222211        1222357788888888898899999999987 788899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHh------CCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCcc---------------cc
Q 040887          196 KSPLSLAIEMGNTDVLEYILRS------LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYS---------------AL  254 (394)
Q Consensus       196 ~~~l~~a~~~~~~~~~~~ll~~------~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~---------------~~  254 (394)
                      ..|+|.|+.+|..++.+.++..      ...+..+..+.+|||.|+..|+.+.++..++.|..               ++
T Consensus       188 ~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~  267 (929)
T KOG0510|consen  188 NFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVN  267 (929)
T ss_pred             CchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhh
Confidence            9999999999999999999972      23367778899999999999999999999888764               33


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHh-CCCCCCcchhhccccCCC
Q 040887          255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE-IPGTNMTMDEVVNKMDED  333 (394)
Q Consensus       255 ~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~  333 (394)
                      ..|.+|.||||+||+.|+.+.+..|+..+.+. +.++.++.||||.|+.+|+.+.++-|++ .+.      .++|..|..
T Consensus       268 ~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~------rllne~D~~  340 (929)
T KOG0510|consen  268 DEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDT------RLLNESDLH  340 (929)
T ss_pred             cccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCc------ccccccccc
Confidence            46789999999999999999999999998887 8899999999999999999999999999 333      238899999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCC---CcccCCCcHHHHHHhhhhcchh
Q 040887          334 GNTPLHLAALHGHSQVVYALLRYGRSNPD---LKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       334 g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~---~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      |.||||+|++.|+.++++.||+.| |+..   ..|.+|.||||+|++.|+....
T Consensus       341 g~tpLHlaa~~gH~~v~qlLl~~G-A~~~~~~e~D~dg~TaLH~Aa~~g~~~av  393 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRVVQLLLNKG-ALFLNMSEADSDGNTALHLAAKYGNTSAV  393 (929)
T ss_pred             CCCchhhhhhcCHHHHHHHHHhcC-hhhhcccccccCCchhhhHHHHhccHHHH
Confidence            999999999999999999999999 7766   4599999999999999986654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-42  Score=315.40  Aligned_cols=268  Identities=21%  Similarity=0.256  Sum_probs=245.3

Q ss_pred             hhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHH-----HHHcCcHHHHHHHHhhccCCCCCCCCc
Q 040887           35 FEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHC-----AARAGKLNTATALVDFAKHIPSTSQAP  109 (394)
Q Consensus        35 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-----A~~~~~~~~v~~Ll~~ga~~~~~~~~~  109 (394)
                      .+..+..+.||||.|+..|+.++|++|++.|. +++..+..|.||||+     |+..++.+++++|++.|++++      
T Consensus        28 ~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~-~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~------  100 (480)
T PHA03100         28 NDYSYKKPVLPLYLAKEARNIDVVKILLDNGA-DINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN------  100 (480)
T ss_pred             chhhhcccchhhhhhhccCCHHHHHHHHHcCC-CCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC------
Confidence            45578889999999999999999999999975 789999999999999     999999999999999999973      


Q ss_pred             chhhhhhhhcCCcHHHHHH--HHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCC
Q 040887          110 VDLLRMENAMGNTALHEAL--FMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKL  187 (394)
Q Consensus       110 ~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  187 (394)
                           ..+..|.||||.|+  ..+                                         ..+++++|++.|.++
T Consensus       101 -----~~d~~g~tpL~~A~~~~~~-----------------------------------------~~~iv~~Ll~~g~~~  134 (480)
T PHA03100        101 -----APDNNGITPLLYAISKKSN-----------------------------------------SYSIVEYLLDNGANV  134 (480)
T ss_pred             -----CCCCCCCchhhHHHhcccC-----------------------------------------hHHHHHHHHHcCCCC
Confidence                 45677999999998  444                                         239999999999998


Q ss_pred             ccccCCCCCcHHHHHHHcC--CHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCC----
Q 040887          188 SCCKNIEDKSPLSLAIEMG--NTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET----  260 (394)
Q Consensus       188 ~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g----  260 (394)
                      + ..+..|.||||+|+..+  +.+++++|++.+.. +..+..|.||||.|+..|+.+++++|++.|++++..+..|    
T Consensus       135 ~-~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~  213 (480)
T PHA03100        135 N-IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFT  213 (480)
T ss_pred             C-ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHH
Confidence            7 67889999999999999  99999999998754 5566789999999999999999999999999999999888    


Q ss_pred             --CcHHHHHHHcCC--HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCc
Q 040887          261 --LYPIHLACKNGH--ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNT  336 (394)
Q Consensus       261 --~~~l~~a~~~~~--~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t  336 (394)
                        .||||.|+..|+  .+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|++.|++       ++.+|..|.|
T Consensus       214 ~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad-------~n~~d~~g~t  285 (480)
T PHA03100        214 IFETPLHIAACYNEITLEVVNYLLSYGVPI-NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN-------PNLVNKYGDT  285 (480)
T ss_pred             HHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCccCCCCCc
Confidence              899999999999  99999999987665 88999999999999999999999999999998       9999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCcc
Q 040887          337 PLHLAALHGHSQVVYALLRYGRSNPDLKN  365 (394)
Q Consensus       337 ~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~  365 (394)
                      |||+|+..++.+++++|+++| ++++..+
T Consensus       286 pl~~A~~~~~~~iv~~Ll~~g-~~i~~i~  313 (480)
T PHA03100        286 PLHIAILNNNKEIFKLLLNNG-PSIKTII  313 (480)
T ss_pred             HHHHHHHhCCHHHHHHHHhcC-CCHHHHH
Confidence            999999999999999999999 8877533

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.9e-42  Score=309.80  Aligned_cols=337  Identities=17%  Similarity=0.125  Sum_probs=247.6

Q ss_pred             HHHHHHHhccchhhhh--ccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887            8 AYFEAAIRGNIDDFLF--SDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus         8 ~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      .|+.++..++.+.+..  ..+...  ..........+.||||+||..|+.++|++|++.|+ +++.+|..|+||||+||.
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~ga-dvn~~d~~g~TpLh~A~~   79 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHT--ENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGH-NVNQPDHRDLTPLHIICK   79 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhh--hhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHH
Confidence            4666777777655555  111111  11123345578999999999999999999999965 899999999999999999


Q ss_pred             cCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887           86 AGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI  165 (394)
Q Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (394)
                      .|+.+++++|++.+.+..             ...+.++++.|+..++...+..++.........         ... ...
T Consensus        80 ~g~~~~v~~Ll~~~~~~~-------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~---------~~~-~~~  136 (477)
T PHA02878         80 EPNKLGMKEMIRSINKCS-------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQT---------IDL-VYI  136 (477)
T ss_pred             CccHhHHHHHHHHHhccc-------------cccchhhHHHHHHcCCHHHHHHHHhCcccCccc---------CcH-HHH
Confidence            999999999999876532             135678999988877655444443321110000         000 000


Q ss_pred             hhhhh--hhHHHHHHHHHhcCCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHH
Q 040887          166 KTNII--NSLVAIAYFLVSLDPKLSCCKNIE-DKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLG  241 (394)
Q Consensus       166 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~  241 (394)
                      .....  ....+++++|++.|++++ ..+.. |.||||+|+..|+.+++++|++.+.. +..+..|.||||.|+..++.+
T Consensus       137 ~~~~~~~~~~~~iv~~Ll~~gadin-~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~  215 (477)
T PHA02878        137 DKKSKDDIIEAEITKLLLSYGADIN-MKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKP  215 (477)
T ss_pred             hhccchhhHHHHHHHHHHHcCCCCC-ccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            00001  122358899999999888 45555 89999999999999999999987644 566778889999999999999


Q ss_pred             HHHHHHhcCccccccCCCCCcHHHHHHHc-CCHHHHHHHHHhcCCCCccccC-CCchHHHHHHHcCCHHHHHHHHhCCCC
Q 040887          242 VCYLLEVNGYSALKKNKETLYPIHLACKN-GHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGT  319 (394)
Q Consensus       242 ~~~~L~~~g~~~~~~~~~g~~~l~~a~~~-~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~  319 (394)
                      ++++|++.|++++.++..|.||||+|+.. ++.+++++|++.+++. +..+. .|.||||+|  .++.+++++|+++|++
T Consensus       216 iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gad  292 (477)
T PHA02878        216 IVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEYGAD  292 (477)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHCCCC
Confidence            99999999999999999999999999875 6889999999887776 55554 789999998  4678889999999988


Q ss_pred             CCcchhhccccCCCCCcHHHHHHHcC-CHHHHHHHHhcC----CCCCCCcccCCCcHHHHHHhhhhc
Q 040887          320 NMTMDEVVNKMDEDGNTPLHLAALHG-HSQVVYALLRYG----RSNPDLKNKQGMTAYKMALREYYM  381 (394)
Q Consensus       320 ~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g----~ad~~~~~~~g~t~l~~a~~~~~~  381 (394)
                             +|.+|..|+||||+|+..+ ..++++.|+..+    ..+++.++..|.++-.-++.....
T Consensus       293 -------in~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i~~~~~  352 (477)
T PHA02878        293 -------INSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCITSNKR  352 (477)
T ss_pred             -------CCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHHhccHH
Confidence                   8889999999999998753 456666665542    267888888888877666665443

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-41  Score=310.40  Aligned_cols=330  Identities=13%  Similarity=0.064  Sum_probs=222.2

Q ss_pred             CCHHHHHHHHh---ccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcC----------------------------
Q 040887            5 LDPAYFEAAIR---GNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSG----------------------------   53 (394)
Q Consensus         5 ~~~~l~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g----------------------------   53 (394)
                      -.|+||+|+..   |+.+.++.+...+.++    +..+.+|.||||+|+..|                            
T Consensus        32 g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v----~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~  107 (661)
T PHA02917         32 KNNALHAYLFNEHCNNVEVVKLLLDSGTNP----LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFS  107 (661)
T ss_pred             CCcHHHHHHHhhhcCcHHHHHHHHHCCCCc----cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHH
Confidence            36899987555   7889998876667666    567788888888777644                            


Q ss_pred             -------CHHHHHHHHHhCCCCcccccCCCCCHHHHHH--HcCcHHHHHHHHhhccCCCCCCCC---cchhhhhhhhcCC
Q 040887           54 -------HGEITAKIAQYYPFLINKTNNQGDTPLHCAA--RAGKLNTATALVDFAKHIPSTSQA---PVDLLRMENAMGN  121 (394)
Q Consensus        54 -------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~ga~~~~~~~~---~~~~~~~~~~~~~  121 (394)
                             +.++|++|+++|. +++..|..|+||||.|+  ..|+.+++++|+++||+++..+..   +..........+.
T Consensus       108 ~~a~~~~~~e~vk~Ll~~Ga-din~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~  186 (661)
T PHA02917        108 YMKSKNVDVDLIKVLVEHGF-DLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCG  186 (661)
T ss_pred             HHHhhcCCHHHHHHHHHcCC-CCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccc
Confidence                   4566777777754 78889999999999654  468999999999999998643221   1111223344567


Q ss_pred             cHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 040887          122 TALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSL  201 (394)
Q Consensus       122 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  201 (394)
                      ||||.|+..+....-                              .....+..+++++|++.|.+++ .++..|.||||+
T Consensus       187 t~L~~a~~~~~~~~~------------------------------~~~~~~~~eiv~~Li~~Gadvn-~~d~~G~TpLh~  235 (661)
T PHA02917        187 TVLHLYIISHLYSES------------------------------DTRAYVRPEVVKCLINHGIKPS-SIDKNYCTALQY  235 (661)
T ss_pred             cHHHHHHhhcccccc------------------------------cccccCcHHHHHHHHHCCCCcc-cCCCCCCcHHHH
Confidence            999999753200000                              0000112377777777777776 566777778888


Q ss_pred             HHHcCCH--HHHHHHHHhCCCC----CCCCCCCChHHHHHhc------C---CHHHHHHHHhcC----------------
Q 040887          202 AIEMGNT--DVLEYILRSLPSG----ISWSSGKSPLQVATKK------R---NLGVCYLLEVNG----------------  250 (394)
Q Consensus       202 a~~~~~~--~~~~~ll~~~~~~----~~~~~~~~~l~~a~~~------~---~~~~~~~L~~~g----------------  250 (394)
                      |+..|+.  +++++|++..+..    ..+..+.+|+++|+.-      .   ..+++++|++.|                
T Consensus       236 A~~~g~~~~eivk~Li~g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~  315 (661)
T PHA02917        236 YIKSSHIDIDIVKLLMKGIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRND  315 (661)
T ss_pred             HHHcCCCcHHHHHHHHhCCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccc
Confidence            7777764  6777776532221    2334445555555521      1   224555555555                


Q ss_pred             -----------------------------------------ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcc
Q 040887          251 -----------------------------------------YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLF  289 (394)
Q Consensus       251 -----------------------------------------~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~  289 (394)
                                                               ++++.++..|.++.    .....++++.|+...+..+..
T Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~  391 (661)
T PHA02917        316 KETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVN  391 (661)
T ss_pred             hHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCccc
Confidence                                                     44444444444321    233344555555432222234


Q ss_pred             ccCCCchHHHHHHHcC-----------------------CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCC
Q 040887          290 VTDNGCNILHFAAKNG-----------------------HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH  346 (394)
Q Consensus       290 ~~~~g~t~L~~A~~~~-----------------------~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  346 (394)
                      .+.+|.||||.|++.+                       ..+++++|+++|++       +|.+|..|+||||+|+..++
T Consensus       392 ~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAd-------IN~kd~~G~TpLh~Aa~~~~  464 (661)
T PHA02917        392 HLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKD-------INMIDKRGETLLHKAVRYNK  464 (661)
T ss_pred             cCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCC-------CCCCCCCCcCHHHHHHHcCC
Confidence            4567999999987532                       35688999999999       99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCcccCCCcHHHHHHh-hhhcc
Q 040887          347 SQVVYALLRYGRSNPDLKNKQGMTAYKMALR-EYYMQ  382 (394)
Q Consensus       347 ~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~-~~~~~  382 (394)
                      .+++++|+++| +|++.++..|.|||++|.. .++.+
T Consensus       465 ~~~v~~Ll~~G-Adin~~d~~G~T~L~~A~~~~~~~~  500 (661)
T PHA02917        465 QSLVSLLLESG-SDVNIRSNNGYTCIAIAINESRNIE  500 (661)
T ss_pred             HHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHhCCCHH
Confidence            99999999999 9999999999999999995 44433

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-41  Score=307.40  Aligned_cols=269  Identities=23%  Similarity=0.243  Sum_probs=243.4

Q ss_pred             CCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHH-----H
Q 040887           53 GHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHE-----A  127 (394)
Q Consensus        53 g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~-----a  127 (394)
                      ...+++++++..+ ...+..+..+.||||+|+..++.+++++|++.|++++           ..+..+.||+|.     |
T Consensus        13 ~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~-----------~~~~~~~t~L~~~~~~~a   80 (480)
T PHA03100         13 IKVKNIKYIIMED-DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN-----------SSTKNNSTPLHYLSNIKY   80 (480)
T ss_pred             HHHHHHHHHHhcC-ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC-----------CccccCcCHHHHHHHHHH
Confidence            3457888888774 4567788999999999999999999999999999975           345668899999     6


Q ss_pred             HHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHH--Hc
Q 040887          128 LFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAI--EM  205 (394)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~--~~  205 (394)
                      +..+                                         ..+++++|++.|++++ ..+..|.||||+|+  ..
T Consensus        81 ~~~~-----------------------------------------~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~  118 (480)
T PHA03100         81 NLTD-----------------------------------------VKEIVKLLLEYGANVN-APDNNGITPLLYAISKKS  118 (480)
T ss_pred             Hhhc-----------------------------------------hHHHHHHHHHCCCCCC-CCCCCCCchhhHHHhccc
Confidence            5544                                         4499999999999995 78889999999999  99


Q ss_pred             CCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcC--CHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 040887          206 GNTDVLEYILRSLPS-GISWSSGKSPLQVATKKR--NLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKE  282 (394)
Q Consensus       206 ~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~  282 (394)
                      |+.+++++|++.+.. +..+..|.||||.|+..+  +.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.
T Consensus       119 ~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  198 (480)
T PHA03100        119 NSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN  198 (480)
T ss_pred             ChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            999999999998654 566788999999999999  88999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCC------chHHHHHHHcCC--HHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887          283 WRCPSLFVTDNG------CNILHFAAKNGH--ADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL  354 (394)
Q Consensus       283 ~~~~~~~~~~~g------~t~L~~A~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  354 (394)
                      +++. +..+..|      .||||+|+..++  .+++++|++.|++       ++.+|..|.||||+|+..|+.+++++|+
T Consensus       199 ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-------in~~d~~g~TpL~~A~~~~~~~iv~~Ll  270 (480)
T PHA03100        199 GADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP-------INIKDVYGFTPLHYAVYNNNPEFVKYLL  270 (480)
T ss_pred             CCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            8776 6677778      899999999999  9999999999999       9999999999999999999999999999


Q ss_pred             hcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          355 RYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       355 ~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +.| +|++.+|..|.||+++|++.+..+..
T Consensus       271 ~~g-ad~n~~d~~g~tpl~~A~~~~~~~iv  299 (480)
T PHA03100        271 DLG-ANPNLVNKYGDTPLHIAILNNNKEIF  299 (480)
T ss_pred             HcC-CCCCccCCCCCcHHHHHHHhCCHHHH
Confidence            999 89999999999999999998876654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.6e-41  Score=306.45  Aligned_cols=337  Identities=14%  Similarity=0.042  Sum_probs=242.0

Q ss_pred             CCHHHHHHHHh--ccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCC--HHHHHHHHHhCCCCcccccCCCCCHH
Q 040887            5 LDPAYFEAAIR--GNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGH--GEITAKIAQYYPFLINKTNNQGDTPL   80 (394)
Q Consensus         5 ~~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~t~L   80 (394)
                      ..|+||.|+..  ++.+.++++...+.++    +.+|.+|.||||+|++.|+  .++|++|++.|+ +++.++..|+|||
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe~GADV----N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GA-DVN~kD~~G~TPL  251 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCNNGVNV----NLQNNHLITPLHTYLITGNVCASVIKKIIELGG-DMDMKCVNGMSPI  251 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHHcCCCC----CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC-CCCCCCCCCCCHH
Confidence            47899988654  6789999977677776    6789999999999999995  599999999976 8999999999999


Q ss_pred             HHHH---HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHH---HHHHHhCccceeeecccCCchhhhhhccc
Q 040887           81 HCAA---RAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALH---EALFMLGRVNVWRTSIAGSSLTMAHSYFL  154 (394)
Q Consensus        81 ~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (394)
                      |+|+   ..++.++++.|++.+..-..             ....++++   .|+..+....+..++..+...        
T Consensus       252 h~Ai~~a~n~~~EIvkiLie~~d~n~~-------------~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI--------  310 (764)
T PHA02716        252 MTYIINIDNINPEITNIYIESLDGNKV-------------KNIPMILHSYITLARNIDISVVYSFLQPGVKL--------  310 (764)
T ss_pred             HHHHHhhhccCHHHHHHHHHhcccccc-------------ccchhhhHHHHHHHHcCCHHHHHHHHhCCCce--------
Confidence            9986   46789999999987433110             00112222   234444433333333333211        


Q ss_pred             CCcccchhhhhhhhhh--hhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHH--------------cCCHHHHHHHHHhC
Q 040887          155 SNPTLAIDDTIKTNII--NSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIE--------------MGNTDVLEYILRSL  218 (394)
Q Consensus       155 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~--------------~~~~~~~~~ll~~~  218 (394)
                      .........++..++.  .+..+++++|++.|.+++ .+|..|.||||+|+.              .++.+++++|++.+
T Consensus       311 N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        311 HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            1112233455665443  346799999999999987 688899999999875              36889999999986


Q ss_pred             CC-CCCCCCCCChHHHH----HhcCCHHHHHHHHhcCccccccC--------CCCCcH--HHHHHHcCCHHHHHH-----
Q 040887          219 PS-GISWSSGKSPLQVA----TKKRNLGVCYLLEVNGYSALKKN--------KETLYP--IHLACKNGHANVMVE-----  278 (394)
Q Consensus       219 ~~-~~~~~~~~~~l~~a----~~~~~~~~~~~L~~~g~~~~~~~--------~~g~~~--l~~a~~~~~~~~v~~-----  278 (394)
                      .. +..+..|.||||.+    ...+..+++++|++.|+......        ..+.+|  +|.++..+..++..+     
T Consensus       390 ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~  469 (764)
T PHA02716        390 ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYE  469 (764)
T ss_pred             CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhh
Confidence            54 66788999999942    23456799999999886533221        122333  555555544332222     


Q ss_pred             -------------HHHhcCCCCccccCCCchHHHHHHHcCCH-----HHHHHHHhCCCCCCcchhhccccCCCCCcHHHH
Q 040887          279 -------------LLKEWRCPSLFVTDNGCNILHFAAKNGHA-----DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHL  340 (394)
Q Consensus       279 -------------Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-----~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~  340 (394)
                                   ++..+. .++..|..|+||||+|+..|+.     +++++|++.|++       +|.+|.+|+||||+
T Consensus       470 ~~~~~~~~~v~~~~ii~~~-nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD-------IN~~d~~G~TPLh~  541 (764)
T PHA02716        470 PYDSTKIHDVYHCAIIERY-NNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN-------INIPTKNGVTPLML  541 (764)
T ss_pred             hccccccchhhHHHHHhhc-cccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC-------CcccCCCCCCHHHH
Confidence                         222222 2366788999999999999876     556999999999       99999999999999


Q ss_pred             HHHcCCH-----HHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcch
Q 040887          341 AALHGHS-----QVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT  383 (394)
Q Consensus       341 A~~~~~~-----~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~  383 (394)
                      |+++|+.     ++++.||++| ++++..      .+.+|....+.+.
T Consensus       542 A~~~g~~~~~~~eIvk~LL~~g-a~~~~~------~l~~~~~~~~~~~  582 (764)
T PHA02716        542 TMRNNRLSGHQWYIVKNILDKR-PNVDIV------IIFLDKCYANGKF  582 (764)
T ss_pred             HHHcCCccccHHHHHHHHHhcC-CCcchH------HHHHHhhhhhhHH
Confidence            9999976     9999999999 888765      3666665544433

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-40  Score=300.33  Aligned_cols=284  Identities=14%  Similarity=0.044  Sum_probs=223.5

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      -+|||.|+..|+.+.++++...+.++    +.+|.+|.||||+||..|+.+++++|++.+.. .+.  ..+.+|++.|+.
T Consensus        38 ~tPLh~A~~~g~~e~vk~Ll~~gadv----n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~-~~~--~~~~~~l~~a~~  110 (477)
T PHA02878         38 FIPLHQAVEARNLDVVKSLLTRGHNV----NQPDHRDLTPLHIICKEPNKLGMKEMIRSINK-CSV--FYTLVAIKDAFN  110 (477)
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCC----CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhc-ccc--ccchhhHHHHHH
Confidence            57999999999999999966666665    67899999999999999999999999998642 222  567899999999


Q ss_pred             cCcHHHHHHHHhhccCCCCCCCCc----------c------------hhhhhhhhc-CCcHHHHHHHHhCccceeeeccc
Q 040887           86 AGKLNTATALVDFAKHIPSTSQAP----------V------------DLLRMENAM-GNTALHEALFMLGRVNVWRTSIA  142 (394)
Q Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~----------~------------~~~~~~~~~-~~t~l~~a~~~~~~~~~~~~~~~  142 (394)
                      .++.+++++|+..+++........          .            ..++..+.. |.||||.|+..+           
T Consensus       111 ~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~-----------  179 (477)
T PHA02878        111 NRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENK-----------  179 (477)
T ss_pred             cCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCC-----------
Confidence            999998888887754432111000          0            001223444 677777776554           


Q ss_pred             CCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-C
Q 040887          143 GSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-G  221 (394)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~  221 (394)
                                                    ..+++++|++.|++++ ..+..|.||||.|+..++.+++++|++.+.. +
T Consensus       180 ------------------------------~~~iv~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        180 ------------------------------DQRLTELLLSYGANVN-IPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             ------------------------------CHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence                                          3499999999999987 6888999999999999999999999997654 6


Q ss_pred             CCCCCCCChHHHHHhc-CCHHHHHHHHhcCccccccCC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHH
Q 040887          222 ISWSSGKSPLQVATKK-RNLGVCYLLEVNGYSALKKNK-ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILH  299 (394)
Q Consensus       222 ~~~~~~~~~l~~a~~~-~~~~~~~~L~~~g~~~~~~~~-~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~  299 (394)
                      ..+..|.||||+|+.. ++.+++++|++.|++++.++. .|.||||.|  .++.+++++|++.+++. +..+..|.||||
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi-n~~d~~g~TpL~  305 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADI-NSLNSYKLTPLS  305 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC-CCcCCCCCCHHH
Confidence            6778999999999976 678999999999999999876 799999999  57789999999988776 889999999999


Q ss_pred             HHHHcC-CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887          300 FAAKNG-HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL  343 (394)
Q Consensus       300 ~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  343 (394)
                      +|+..+ ..+++++|+......  .....+.++..|.++-..++.
T Consensus       306 ~A~~~~~~~~~~~~li~~~~~~--~~~~~~~~~~~g~~~n~~~i~  348 (477)
T PHA02878        306 SAVKQYLCINIGRILISNICLL--KRIKPDIKNSEGFIDNMDCIT  348 (477)
T ss_pred             HHHHHcCccchHHHHHHHHHHH--HhccCcccCcHHHHHHHHHHh
Confidence            999854 567888887654210  000156667777776555554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=9e-43  Score=323.42  Aligned_cols=358  Identities=25%  Similarity=0.287  Sum_probs=285.1

Q ss_pred             CCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887            5 LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA   84 (394)
Q Consensus         5 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   84 (394)
                      ..|++|.||..+-++.+......+.++    ...|..|-||||.|+..|+.+++++++.+++ .++..+..|.||+|.|+
T Consensus       209 ~~tpl~~a~~~nri~~~eLll~~gadv----~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga-~~~~~~vr~~tplh~AA  283 (1143)
T KOG4177|consen  209 GFTPLHIACKKNRIKVVELLLKHGADV----SAKDESGLTPLHVAAFMGHLDIVKLLLQHGA-SVNVSTVRGETPLHMAA  283 (1143)
T ss_pred             CCCchhhhccccccceeeeeeeccCcC----CcccccCccHHHHHHhccchhHHHHHHhccc-ccCcccccccCcchhhh
Confidence            368999999999999999977777776    7799999999999999999999999999977 68999999999999999


Q ss_pred             HcCcHHHHHHHHhhccCCCCCCCCcch----------------------hhhhhhhcCCcHHHHHHHHhCccceeeeccc
Q 040887           85 RAGKLNTATALVDFAKHIPSTSQAPVD----------------------LLRMENAMGNTALHEALFMLGRVNVWRTSIA  142 (394)
Q Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~----------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~  142 (394)
                      +.+..+++++|+++|+++........+                      .....+..|.+|+|.++..+...........
T Consensus       284 ~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~  363 (1143)
T KOG4177|consen  284 RAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEH  363 (1143)
T ss_pred             ccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhcc
Confidence            999999999999999998765433222                      1233456777888888777644422111111


Q ss_pred             CCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC-CC
Q 040887          143 GSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLP-SG  221 (394)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~  221 (394)
                      ..        ...........+...+...+..++++.++..|.+++ .....|.||||.|+..++.++++.+++.+. .+
T Consensus       364 ~~--------~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~  434 (1143)
T KOG4177|consen  364 GA--------QRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPN  434 (1143)
T ss_pred             cc--------ccCcccccCCcchhhhcccCchhHHHhhhhccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCCChh
Confidence            11        111122233345566667777788888888888855 677778888888888888888887777543 35


Q ss_pred             CCCCCCCChHHHHHhcC-CHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCC---------------
Q 040887          222 ISWSSGKSPLQVATKKR-NLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC---------------  285 (394)
Q Consensus       222 ~~~~~~~~~l~~a~~~~-~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~---------------  285 (394)
                      ..+..|.||+|+|+..+ ..+....+.+.|.+++.....|.||||.|+..|+.+++..+++....               
T Consensus       435 ~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla  514 (1143)
T KOG4177|consen  435 AKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLA  514 (1143)
T ss_pred             hHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhh
Confidence            56667788888888777 55777777777888877777888888888777777777777664311               


Q ss_pred             -----------------CCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHH
Q 040887          286 -----------------PSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ  348 (394)
Q Consensus       286 -----------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  348 (394)
                                       ..+.++..|+||||+|+.+|+.++|++|+++|++       ++.+++.|+||||.|+..|+.+
T Consensus       515 ~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd-------v~ak~~~G~TPLH~Aa~~G~~~  587 (1143)
T KOG4177|consen  515 ADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD-------VNAKDKLGYTPLHQAAQQGHND  587 (1143)
T ss_pred             hhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc-------ccccCCCCCChhhHHHHcChHH
Confidence                             2255677899999999999999999999999999       9999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          349 VVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       349 ~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      ++.+|+++| |++|+.|.+|.|||++|.+.|+.+..
T Consensus       588 i~~LLlk~G-A~vna~d~~g~TpL~iA~~lg~~~~~  622 (1143)
T KOG4177|consen  588 IAELLLKHG-ASVNAADLDGFTPLHIAVRLGYLSVV  622 (1143)
T ss_pred             HHHHHHHcC-CCCCcccccCcchhHHHHHhcccchh
Confidence            999999999 99999999999999999999998775

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.5e-40  Score=294.09  Aligned_cols=295  Identities=16%  Similarity=0.135  Sum_probs=250.5

Q ss_pred             CCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887            5 LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA   84 (394)
Q Consensus         5 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   84 (394)
                      ..||||.|+..|+.+.++++...+.++    +..+..|.||||.|+..|+.+++++|+++|. ++.        +  .++
T Consensus        35 ~~tpL~~A~~~g~~~iv~~Ll~~Ga~~----n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~-~~~--------~--~~~   99 (434)
T PHA02874         35 TTTPLIDAIRSGDAKIVELFIKHGADI----NHINTKIPHPLLTAIKIGAHDIIKLLIDNGV-DTS--------I--LPI   99 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC----CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCC--------c--chh
Confidence            469999999999999999976666665    5688899999999999999999999999975 222        1  233


Q ss_pred             HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhh
Q 040887           85 RAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT  164 (394)
Q Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (394)
                      ...+.+++++|++.|++++           ..+..|.||||.|+..+                  .              
T Consensus       100 ~~~~~~~i~~ll~~g~d~n-----------~~~~~g~T~Lh~A~~~~------------------~--------------  136 (434)
T PHA02874        100 PCIEKDMIKTILDCGIDVN-----------IKDAELKTFLHYAIKKG------------------D--------------  136 (434)
T ss_pred             ccCCHHHHHHHHHCcCCCC-----------CCCCCCccHHHHHHHCC------------------C--------------
Confidence            4457899999999999974           45677999999999766                  2              


Q ss_pred             hhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHH
Q 040887          165 IKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVC  243 (394)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~  243 (394)
                               .+++++|++.|.+++ .++..|.||||+|+..++.+++++|++.+.. +..+..|.||||.|+..|+.+++
T Consensus       137 ---------~~~v~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv  206 (434)
T PHA02874        137 ---------LESIKMLFEYGADVN-IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACI  206 (434)
T ss_pred             ---------HHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence                     289999999999987 6788999999999999999999999997654 56778899999999999999999


Q ss_pred             HHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC-CHHHHHHHHhCCCCCCc
Q 040887          244 YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG-HADMVKAIIEIPGTNMT  322 (394)
Q Consensus       244 ~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~  322 (394)
                      ++|++.|++++.++..|.||||.|+..+. +.+.+|+. +. .++.++..|.||||+|+..+ +.+++++|+++|++   
T Consensus       207 ~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~-~~-~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad---  280 (434)
T PHA02874        207 KLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN-NA-SINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD---  280 (434)
T ss_pred             HHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHHc-CC-CCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC---
Confidence            99999999999999999999999999875 56666663 34 44889999999999999875 88999999999999   


Q ss_pred             chhhccccCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCCCcccCC-CcHHHHHHhh
Q 040887          323 MDEVVNKMDEDGNTPLHLAALHG-HSQVVYALLRYGRSNPDLKNKQG-MTAYKMALRE  378 (394)
Q Consensus       323 ~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~ad~~~~~~~g-~t~l~~a~~~  378 (394)
                          ++.+|..|+||||+|++++ ...+++.|+..+ +.++..+..+ .+++..+...
T Consensus       281 ----~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~-~~~~~~~~~~~~~~~~~~~i~  333 (434)
T PHA02874        281 ----ISIKDNKGENPIDTAFKYINKDPVIKDIIANA-VLIKEADKLKDSDFLEHIEIK  333 (434)
T ss_pred             ----CCCCCCCCCCHHHHHHHhCCccHHHHHHHHhc-CchhhccccchhHHHHHHHHh
Confidence                9999999999999999987 678999999998 6665555444 4556555433

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-40  Score=293.05  Aligned_cols=241  Identities=20%  Similarity=0.235  Sum_probs=211.9

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCC
Q 040887           42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGN  121 (394)
Q Consensus        42 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  121 (394)
                      ++++||.|+..|+.+++++|++.|. +++..+..|.||||+|+..|+.+++++|++.|++++                  
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~-~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~------------------   62 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGI-NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD------------------   62 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------------------
Confidence            5689999999999999999999865 788899999999999999999999999999988753                  


Q ss_pred             cHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 040887          122 TALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSL  201 (394)
Q Consensus       122 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  201 (394)
                                                                                          ..+..+.+|||.
T Consensus        63 --------------------------------------------------------------------~~~~~~~t~L~~   74 (413)
T PHA02875         63 --------------------------------------------------------------------VKYPDIESELHD   74 (413)
T ss_pred             --------------------------------------------------------------------ccCCCcccHHHH
Confidence                                                                                122346788999


Q ss_pred             HHHcCCHHHHHHHHHhCCC--CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          202 AIEMGNTDVLEYILRSLPS--GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVEL  279 (394)
Q Consensus       202 a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~L  279 (394)
                      |+..|+.+++++|++.+..  ...+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus        75 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L  154 (413)
T PHA02875         75 AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL  154 (413)
T ss_pred             HHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999987654  33456789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCC-CcHHHHHHHcCCHHHHHHHHhcCC
Q 040887          280 LKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG-NTPLHLAALHGHSQVVYALLRYGR  358 (394)
Q Consensus       280 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~g~  358 (394)
                      ++.+... +.+|..|.||||+|+..|+.+++++|++.|++       ++..+..| .||+|+|+..|+.+++++|+++| 
T Consensus       155 l~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~-------~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g-  225 (413)
T PHA02875        155 IDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN-------IDYFGKNGCVAALCYAIENNKIDIVRLFIKRG-  225 (413)
T ss_pred             HhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-------CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC-
Confidence            9987765 78899999999999999999999999999999       88888877 48899999999999999999999 


Q ss_pred             CCCCCc---ccCCCcHHHHHHhh
Q 040887          359 SNPDLK---NKQGMTAYKMALRE  378 (394)
Q Consensus       359 ad~~~~---~~~g~t~l~~a~~~  378 (394)
                      +|++..   +..|.||++++...
T Consensus       226 ad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        226 ADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             cCcchHhhcCCCchHHHHHHHhh
Confidence            999865   66788999987644

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=291.75  Aligned_cols=327  Identities=14%  Similarity=0.083  Sum_probs=244.1

Q ss_pred             hhcCCCCchHHHHHHhcC---CHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcC--cHHHHHHHHhhccCCCCCCCCcc
Q 040887           36 EKVLTDGSSLLHVAAKSG---HGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG--KLNTATALVDFAKHIPSTSQAPV  110 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~~~  110 (394)
                      ..+|.+|+||||+|+..|   +.++|++||++|+ +++.+|..|+||||+|+..+  +.++|++|++.|++.+       
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GA-din~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~-------  106 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGV-ERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNAS-------  106 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCC-CCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCC-------
Confidence            368899999999999997   5999999999976 79999999999999999977  7999999999987642       


Q ss_pred             hhhhhhhhcCCcHHHHHHHHh-Cccceeeeccc-C-CchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCC
Q 040887          111 DLLRMENAMGNTALHEALFML-GRVNVWRTSIA-G-SSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKL  187 (394)
Q Consensus       111 ~~~~~~~~~~~t~l~~a~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  187 (394)
                        ....+..+.+|++.++.+. +...+.++++. + ..+.......   .......+...+..+...+++++|+++|++.
T Consensus       107 --~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~---~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v  181 (672)
T PHA02730        107 --NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYY---IHCLGLVDIYVTTPNPRPEVLLWLLKSECYS  181 (672)
T ss_pred             --cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhh---ccccchhhhhHhcCCCchHHHHHHHHcCCcc
Confidence              1334666889999988732 22223333331 2 1111110000   0001123344555667779999999999998


Q ss_pred             ccc------cCCCCCc-HHHHH------HHcCCHHHHHHHHHhCCC-CCCCCCCCChHHH--HHhcCCHHHHHHHHh---
Q 040887          188 SCC------KNIEDKS-PLSLA------IEMGNTDVLEYILRSLPS-GISWSSGKSPLQV--ATKKRNLGVCYLLEV---  248 (394)
Q Consensus       188 ~~~------~~~~~~~-~l~~a------~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~--a~~~~~~~~~~~L~~---  248 (394)
                      +..      .+....+ .||++      ..+++.+++++|++++.. +..+..|.||||+  +...++.+++++|++   
T Consensus       182 ~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~  261 (672)
T PHA02730        182 TGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVD  261 (672)
T ss_pred             cccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccc
Confidence            511      3333443 44433      355789999999999877 7788999999995  555667899999999   


Q ss_pred             -----------------------------cCccccc--------------------cCCCCCc-----------------
Q 040887          249 -----------------------------NGYSALK--------------------KNKETLY-----------------  262 (394)
Q Consensus       249 -----------------------------~g~~~~~--------------------~~~~g~~-----------------  262 (394)
                                                   .|+|...                    .+..|.+                 
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~  341 (672)
T PHA02730        262 TCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDES  341 (672)
T ss_pred             cccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchh
Confidence                                         7887755                    4455544                 


Q ss_pred             ----HHHHHHHcC---CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCC----HHHHHHHHhCCCC-CCcchhhcccc
Q 040887          263 ----PIHLACKNG---HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGH----ADMVKAIIEIPGT-NMTMDEVVNKM  330 (394)
Q Consensus       263 ----~l~~a~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~~~~-~~~~~~~~~~~  330 (394)
                          .||.-.+++   +.++++.|++++++. +.. ..|.||||+|+..++    .+++++|+++|++ +      ++.+
T Consensus       342 ~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~d------IN~k  413 (672)
T PHA02730        342 IVQAMLINYLHYGDMVSIPILRCMLDNGATM-DKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMA------INHV  413 (672)
T ss_pred             HHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-CcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcc------cccc
Confidence                566666755   589999999998887 554 789999999998875    8999999999983 2      8999


Q ss_pred             CCCCCcHHHH---HHHcC---------CHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          331 DEDGNTPLHL---AALHG---------HSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       331 ~~~g~t~L~~---A~~~~---------~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      |..|.||||.   |...+         ..+++++|+.+| +|++.+|..|+||||+|+..+..+..
T Consensus       414 d~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G-ADINakD~~G~TPLh~Aa~~~~~eiv  478 (672)
T PHA02730        414 SNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM-DDIDMIDNENKTLLYYAVDVNNIQFA  478 (672)
T ss_pred             ccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc-cchhccCCCCCCHHHHHHHhCCHHHH
Confidence            9999999994   33332         235799999999 99999999999999999998776543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-39  Score=268.12  Aligned_cols=231  Identities=15%  Similarity=0.134  Sum_probs=162.8

Q ss_pred             cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHh
Q 040887           52 SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFML  131 (394)
Q Consensus        52 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  131 (394)
                      +++.+++++|++.++   +..|..|+||||+|+..|+.+++++|++.|++++..             .+.||||.|+..+
T Consensus         9 ~~~~~~~~~Lis~~a---~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~-------------d~~TpLh~Aa~~g   72 (284)
T PHA02791          9 WKSKQLKSFLSSKDA---FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL-------------ENEFPLHQAATLE   72 (284)
T ss_pred             cCHHHHHHHHHhCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC-------------CCCCHHHHHHHCC
Confidence            355666666666543   345666666666666666666666666666654311             1345555555443


Q ss_pred             CccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHH
Q 040887          132 GRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVL  211 (394)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  211 (394)
                                        +.                       +++++|++.|.+++ .++..|.||||+|+..|+.+++
T Consensus        73 ------------------~~-----------------------eiV~lLL~~Gadvn-~~d~~G~TpLh~Aa~~g~~eiv  110 (284)
T PHA02791         73 ------------------DT-----------------------KIVKILLFSGMDDS-QFDDKGNTALYYAVDSGNMQTV  110 (284)
T ss_pred             ------------------CH-----------------------HHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHH
Confidence                              11                       55555555555554 4666788888888888888888


Q ss_pred             HHHHHhCCC-CCCCCCC-CChHHHHHhcCCHHHHHHHHhcCccccccC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCc
Q 040887          212 EYILRSLPS-GISWSSG-KSPLQVATKKRNLGVCYLLEVNGYSALKKN-KETLYPIHLACKNGHANVMVELLKEWRCPSL  288 (394)
Q Consensus       212 ~~ll~~~~~-~~~~~~~-~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~-~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~  288 (394)
                      ++|++.+.. +..+..| .||||+|+..++.+++++|++.+.+.  .+ ..|.||||+|++.|+.++++.|++.+++. +
T Consensus       111 k~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n  187 (284)
T PHA02791        111 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTST-N  187 (284)
T ss_pred             HHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCC-C
Confidence            888887654 3344555 47888888888888888888876433  22 24788888888888888888888887665 7


Q ss_pred             cccCCCchH-HHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          289 FVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       289 ~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      .++..|.|| ||+|+..|+.+++++|+++|++       +|.+|..| |||      ++.+++++||++.
T Consensus       188 ~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~-------in~~~~~~-~~l------~~~e~~~~ll~~~  243 (284)
T PHA02791        188 TNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN-------IYSVNLEN-VLL------DDAEIAKMIIEKH  243 (284)
T ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHCCCC-------CccCcccC-ccC------CCHHHHHHHHHhh
Confidence            777778766 8888888888888888888888       88888754 555      7778888888877

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-39  Score=293.45  Aligned_cols=280  Identities=18%  Similarity=0.177  Sum_probs=235.6

Q ss_pred             HHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhc--CCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcC---
Q 040887           13 AIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKS--GHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG---   87 (394)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---   87 (394)
                      ....+.+.++.+...+.++    +.+ .+|.||||.++..  ++.++|++|+++|+ ++|.++ .+.||||.|+.++   
T Consensus        11 ~~~~~~~~v~~LL~~Gadv----N~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GA-dvn~~~-~~~tpL~~a~~~~~~~   83 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDV----NEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGA-DVNYKG-YIETPLCAVLRNREIT   83 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCc----ccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCC-CccCCC-CCCCcHHHHHhccCcc
Confidence            3467889999877677776    445 5699999876554  37899999999976 788876 5799999998754   


Q ss_pred             ---cHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhh
Q 040887           88 ---KLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT  164 (394)
Q Consensus        88 ---~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (394)
                         +.+++++|+++||+++           ..+..|.||||.|+....                                
T Consensus        84 ~~~~~~iv~~Ll~~Gadin-----------~~d~~g~tpL~~a~~~~~--------------------------------  120 (494)
T PHA02989         84 SNKIKKIVKLLLKFGADIN-----------LKTFNGVSPIVCFIYNSN--------------------------------  120 (494)
T ss_pred             hhhHHHHHHHHHHCCCCCC-----------CCCCCCCcHHHHHHHhcc--------------------------------
Confidence               5789999999999974           456779999999876541                                


Q ss_pred             hhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHc--CCHHHHHHHHHhCCCCC--CCCCCCChHHHHHhcC--
Q 040887          165 IKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEM--GNTDVLEYILRSLPSGI--SWSSGKSPLQVATKKR--  238 (394)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~--~~~~~~~~l~~a~~~~--  238 (394)
                            .+..+++++|++.|++++..++..|.||||+|+..  ++.+++++|++.+....  .+..|.||||.|+..+  
T Consensus       121 ------~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~  194 (494)
T PHA02989        121 ------INNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDID  194 (494)
T ss_pred             ------cCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccc
Confidence                  01239999999999999557888999999998764  58999999999876633  3578999999998765  


Q ss_pred             --CHHHHHHHHhcCccccccCCCCCcHHHHHHHcC------CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHH
Q 040887          239 --NLGVCYLLEVNGYSALKKNKETLYPIHLACKNG------HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMV  310 (394)
Q Consensus       239 --~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  310 (394)
                        +.+++++|++.|++++.++..+.+|||.++..+      ..+++.+|+. + .+++.+|..|.||||+|+..++.+++
T Consensus       195 ~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~-advn~~d~~G~TpL~~Aa~~~~~~~v  272 (494)
T PHA02989        195 VISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-Y-IKINKKDKKGFNPLLISAKVDNYEAF  272 (494)
T ss_pred             cccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-C-CCCCCCCCCCCCHHHHHHHhcCHHHH
Confidence              779999999999999999999999999877643      4677777665 4 45589999999999999999999999


Q ss_pred             HHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          311 KAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       311 ~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      ++|++.|++       ++.+|..|+||||+|+..|+.+++++|++.+
T Consensus       273 ~~LL~~Gad-------in~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        273 NYLLKLGDD-------IYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             HHHHHcCCC-------ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999       9999999999999999999999999999987

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-38  Score=289.95  Aligned_cols=273  Identities=18%  Similarity=0.169  Sum_probs=231.1

Q ss_pred             cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHc--CcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHH
Q 040887           52 SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARA--GKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALF  129 (394)
Q Consensus        52 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~  129 (394)
                      ..+.++|++|++.|. ++|.+ ..|.||||.++..  ++.++|++|+++||+++..           + .+.||||.++.
T Consensus        13 ~~~~~~v~~LL~~Ga-dvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~-----------~-~~~tpL~~a~~   78 (494)
T PHA02989         13 TVDKNALEFLLRTGF-DVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYK-----------G-YIETPLCAVLR   78 (494)
T ss_pred             cCcHHHHHHHHHcCC-Ccccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCC-----------C-CCCCcHHHHHh
Confidence            478999999999976 78988 6799999876654  3689999999999998632           2 36899998865


Q ss_pred             HhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHc---C
Q 040887          130 MLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEM---G  206 (394)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~---~  206 (394)
                      .+..                                   ...+..+++++|++.|++++ .++..|.||||.|+..   +
T Consensus        79 ~~~~-----------------------------------~~~~~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~  122 (494)
T PHA02989         79 NREI-----------------------------------TSNKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNIN  122 (494)
T ss_pred             ccCc-----------------------------------chhhHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccC
Confidence            4310                                   01234489999999999998 6788899999988765   6


Q ss_pred             CHHHHHHHHHhCCC--CCCCCCCCChHHHHHhc--CCHHHHHHHHhcCccccc-cCCCCCcHHHHHHHcC----CHHHHH
Q 040887          207 NTDVLEYILRSLPS--GISWSSGKSPLQVATKK--RNLGVCYLLEVNGYSALK-KNKETLYPIHLACKNG----HANVMV  277 (394)
Q Consensus       207 ~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~--~~~~~~~~L~~~g~~~~~-~~~~g~~~l~~a~~~~----~~~~v~  277 (394)
                      +.+++++|++.+..  +..+..|.||||+|+..  ++.+++++|++.|++++. .+..|.||||.|++.+    +.++++
T Consensus       123 ~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~  202 (494)
T PHA02989        123 NCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIK  202 (494)
T ss_pred             cHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHH
Confidence            79999999998766  35778999999998765  577999999999999988 6789999999998764    899999


Q ss_pred             HHHHhcCCCCccccCCCchHHHHHHHc------CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887          278 ELLKEWRCPSLFVTDNGCNILHFAAKN------GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       278 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~------~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  351 (394)
                      +|++.+.+. +..+..+.||||.++..      +..+++++|+. |++       +|.+|..|+||||+|+..|+.++++
T Consensus       203 ~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad-------vn~~d~~G~TpL~~Aa~~~~~~~v~  273 (494)
T PHA02989        203 YLIKKGVNI-ETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK-------INKKDKKGFNPLLISAKVDNYEAFN  273 (494)
T ss_pred             HHHhCCCCc-cccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCC-------CCCCCCCCCCHHHHHHHhcCHHHHH
Confidence            999998776 77888899999987764      45788887765 677       9999999999999999999999999


Q ss_pred             HHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          352 ALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       352 ~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +|++.| +|++.+|..|+|||++|++.|+.+..
T Consensus       274 ~LL~~G-adin~~d~~G~TpL~~A~~~~~~~iv  305 (494)
T PHA02989        274 YLLKLG-DDIYNVSKDGDTVLTYAIKHGNIDML  305 (494)
T ss_pred             HHHHcC-CCccccCCCCCCHHHHHHHcCCHHHH
Confidence            999999 99999999999999999999887654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.6e-39  Score=263.79  Aligned_cols=235  Identities=20%  Similarity=0.140  Sum_probs=199.8

Q ss_pred             hccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHH
Q 040887           15 RGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATA   94 (394)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   94 (394)
                      .++.+.++++...+.+      .+|.+|.||||+|+..|+.+++++|++.++ +++..  .|.||||+|+..|+.+++++
T Consensus         9 ~~~~~~~~~Lis~~a~------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga-~~n~~--d~~TpLh~Aa~~g~~eiV~l   79 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF------KADVHGHSALYYAIADNNVRLVCTLLNAGA-LKNLL--ENEFPLHQAATLEDTKIVKI   79 (284)
T ss_pred             cCHHHHHHHHHhCCCC------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcC-CCcCC--CCCCHHHHHHHCCCHHHHHH
Confidence            4556666664444443      389999999999999999999999999976 56655  47899999999999999999


Q ss_pred             HHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHH
Q 040887           95 LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLV  174 (394)
Q Consensus        95 Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (394)
                      |++.|++++           .+|..|.||||+|+..+                  +.                       
T Consensus        80 LL~~Gadvn-----------~~d~~G~TpLh~Aa~~g------------------~~-----------------------  107 (284)
T PHA02791         80 LLFSGMDDS-----------QFDDKGNTALYYAVDSG------------------NM-----------------------  107 (284)
T ss_pred             HHHCCCCCC-----------CCCCCCCCHHHHHHHcC------------------CH-----------------------
Confidence            999999874           45778999999999877                  33                       


Q ss_pred             HHHHHHHhcCCCCccccCCCC-CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccc
Q 040887          175 AIAYFLVSLDPKLSCCKNIED-KSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSA  253 (394)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~  253 (394)
                      +++++|++.|++++. ++..| .||||+|+..|+.+++++|++.++.......|.||||+|+..|+.+++++|++.|+++
T Consensus       108 eivk~Ll~~gadin~-~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~  186 (284)
T PHA02791        108 QTVKLFVKKNWRLMF-YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST  186 (284)
T ss_pred             HHHHHHHHCCCCcCc-cCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            999999999999874 55556 5899999999999999999997654332235899999999999999999999999999


Q ss_pred             cccCCCCCcH-HHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 040887          254 LKKNKETLYP-IHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGT  319 (394)
Q Consensus       254 ~~~~~~g~~~-l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  319 (394)
                      +.++..|.+| ||+|+..|+.+++++|++.+++. +..|..| ++|      ++.|++++||++-.+
T Consensus       187 n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i-n~~~~~~-~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        187 NTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI-YSVNLEN-VLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC-ccCcccC-ccC------CCHHHHHHHHHhhhh
Confidence            9999999987 99999999999999999998776 7787754 554      899999999987765

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.1e-39  Score=232.50  Aligned_cols=200  Identities=26%  Similarity=0.331  Sum_probs=179.8

Q ss_pred             hhhhHHHHHHHHHhcCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHHh--CCCCCCCCCCCChHHHHHhcCCHHHHHH
Q 040887          169 IINSLVAIAYFLVSLDP-KLSCCKNIEDKSPLSLAIEMGNTDVLEYILRS--LPSGISWSSGKSPLQVATKKRNLGVCYL  245 (394)
Q Consensus       169 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~  245 (394)
                      +......-++.+++..+ +++...|.+|+||||+||..|+.+++++|++.  ...+..+..|+||||+|+..|+.++++.
T Consensus        11 ~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~   90 (226)
T KOG4412|consen   11 CENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKE   90 (226)
T ss_pred             HhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHH
Confidence            33344455666666665 66767777999999999999999999999963  3446678999999999999999999999


Q ss_pred             HHhc-CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcch
Q 040887          246 LEVN-GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMD  324 (394)
Q Consensus       246 L~~~-g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  324 (394)
                      |+.+ |++++..+..|+|+||+|+..|..+++++|+++++.+ +.+|..|.||||.|+.-|..+++++|+..|+.     
T Consensus        91 Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~~a~-----  164 (226)
T KOG4412|consen   91 LLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP-----  164 (226)
T ss_pred             HhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhcCCC-----
Confidence            9988 9999999999999999999999999999999998555 99999999999999999999999999999998     


Q ss_pred             hhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhh
Q 040887          325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE  378 (394)
Q Consensus       325 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~  378 (394)
                        +|.+|+.|+||||.|..-|+.+...+|+++| |+.+.+|++| ||+..|...
T Consensus       165 --~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  165 --LNTQDKYGFTPLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             --CCcccccCccHHHHHHhccCchHHHHHHHhc-cceeeccccC-chHHHHHHH
Confidence              9999999999999999999999999999999 9999999999 998888644

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-39  Score=231.86  Aligned_cols=185  Identities=24%  Similarity=0.286  Sum_probs=139.1

Q ss_pred             hhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhh-ccCCCCCCCCcc
Q 040887           32 HHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDF-AKHIPSTSQAPV  110 (394)
Q Consensus        32 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~  110 (394)
                      .++....|.+|+|||||||..|+.+++++|++.....+|..|..|+||||.||..|+.++|+-|+.+ |++++       
T Consensus        28 kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advn-------  100 (226)
T KOG4412|consen   28 KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVN-------  100 (226)
T ss_pred             hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcc-------
Confidence            3444444558888888888888888888888766666777788888888888888888888888877 66653       


Q ss_pred             hhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccc
Q 040887          111 DLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCC  190 (394)
Q Consensus       111 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  190 (394)
                                                                                                     .
T Consensus       101 -------------------------------------------------------------------------------a  101 (226)
T KOG4412|consen  101 -------------------------------------------------------------------------------A  101 (226)
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           2


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHc
Q 040887          191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN  270 (394)
Q Consensus       191 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~  270 (394)
                      .+..|.|+||+|+.+|..++++                                +|++.|+.++.+|..|.||||.|+.-
T Consensus       102 ~tn~G~T~LHyAagK~r~eIaq--------------------------------lLle~ga~i~~kD~~~qtplHRAAav  149 (226)
T KOG4412|consen  102 TTNGGQTCLHYAAGKGRLEIAQ--------------------------------LLLEKGALIRIKDKQGQTPLHRAAAV  149 (226)
T ss_pred             ecCCCcceehhhhcCChhhHHH--------------------------------HHHhcCCCCcccccccCchhHHHHhc
Confidence            2334555555555555555544                                55556777888888888888888888


Q ss_pred             CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887          271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL  343 (394)
Q Consensus       271 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  343 (394)
                      |..+++++|+..++.. +..|..|+||||.|...|+.++...|++.|++       +...|+.| ||+..|+-
T Consensus       150 Gklkvie~Li~~~a~~-n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd-------~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  150 GKLKVIEYLISQGAPL-NTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD-------TDREDKEG-TALRIACN  213 (226)
T ss_pred             cchhhHHHHHhcCCCC-CcccccCccHHHHHHhccCchHHHHHHHhccc-------eeeccccC-chHHHHHH
Confidence            8888888888887444 88888888888888888888888888888888       78888887 88777653

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.8e-38  Score=257.73  Aligned_cols=220  Identities=18%  Similarity=0.225  Sum_probs=147.9

Q ss_pred             HHHHHHhccchhhhh--ccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCccc--------ccCCCCC
Q 040887            9 YFEAAIRGNIDDFLF--SDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINK--------TNNQGDT   78 (394)
Q Consensus         9 l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~--------~~~~g~t   78 (394)
                      .+.|++.|++..+..  ...++.++.+++.. ..+|.|||-.||++|+.++|++|+++.+.++.+        ....|-+
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~-~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegap   86 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGE-VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAP   86 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhcc-ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCc
Confidence            348899999988888  33445666666665 455779999999999999999999975544333        3466788


Q ss_pred             HHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcc
Q 040887           79 PLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPT  158 (394)
Q Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (394)
                      ||..|+..|++++|+.|+++|++++.++..           ..|||..||+.|+...++.+..++.++...+..-     
T Consensus        87 pLWaAsaAGHl~vVk~L~~~ga~VN~tT~T-----------NStPLraACfDG~leivKyLvE~gad~~IanrhG-----  150 (615)
T KOG0508|consen   87 PLWAASAAGHLEVVKLLLRRGASVNDTTRT-----------NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHG-----  150 (615)
T ss_pred             hhhHHhccCcHHHHHHHHHhcCcccccccc-----------CCccHHHHHhcchhHHHHHHHHcCCCCcccccCC-----
Confidence            999999999999999999999998755433           5688888888886555555555444443333211     


Q ss_pred             cchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcC
Q 040887          159 LAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKR  238 (394)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~  238 (394)
                         ...+..++..++.+++++|++.|.+++ .++..|.|+||.++++|+.+++++|+.++..-..+..|.|||..|...|
T Consensus       151 ---hTcLmIa~ykGh~~I~qyLle~gADvn-~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG  226 (615)
T KOG0508|consen  151 ---HTCLMIACYKGHVDIAQYLLEQGADVN-AKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTG  226 (615)
T ss_pred             ---CeeEEeeeccCchHHHHHHHHhCCCcc-hhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhc
Confidence               122333444455566666666666665 5555666666666666666666666666555555555666666666666


Q ss_pred             CHHHHHHHHhc
Q 040887          239 NLGVCYLLEVN  249 (394)
Q Consensus       239 ~~~~~~~L~~~  249 (394)
                      +.+++..|++.
T Consensus       227 ~~~iVe~L~~~  237 (615)
T KOG0508|consen  227 HTDIVERLLQC  237 (615)
T ss_pred             chHHHHHHhcC
Confidence            66666666543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=7.9e-38  Score=290.69  Aligned_cols=360  Identities=23%  Similarity=0.224  Sum_probs=292.7

Q ss_pred             CCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887            5 LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA   84 (394)
Q Consensus         5 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   84 (394)
                      .=++||.|+..|.++.+++....+...    +..+-.|.||+|.||+.+..+++++|+++|. ++...+....||+|.|.
T Consensus       242 gl~~lh~a~~~g~~~i~~~l~~~ga~~----~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga-~~~~~~~~~kt~l~~a~  316 (1143)
T KOG4177|consen  242 GLTPLHVAAFMGHLDIVKLLLQHGASV----NVSTVRGETPLHMAARAGQVEVCKLLLQNGA-DVLAKARDDQTPLHIAS  316 (1143)
T ss_pred             CccHHHHHHhccchhHHHHHHhccccc----CcccccccCcchhhhccchhhhHhhhhccCc-ccccccccccChhhhhc
Confidence            357999999999999999955444443    4478889999999999999999999999966 78888888899999999


Q ss_pred             HcCcHHHHHHHHhhccCCCCCCCCcchhhh----------------------hhhhcCCcHHHHHHHHhCccceeeeccc
Q 040887           85 RAGKLNTATALVDFAKHIPSTSQAPVDLLR----------------------MENAMGNTALHEALFMLGRVNVWRTSIA  142 (394)
Q Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~----------------------~~~~~~~t~l~~a~~~~~~~~~~~~~~~  142 (394)
                      ..|..+++++++..++.+++........+.                      .....|.||+|.++..+....+...+..
T Consensus       317 ~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~  396 (1143)
T KOG4177|consen  317 RLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEA  396 (1143)
T ss_pred             ccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhc
Confidence            999999999999998888877654333211                      1234556666666666655555555554


Q ss_pred             CCchhhhhhcccCCcc-------------------------cchhhhhhhhhhhh-HHHHHHHHHhcCCCCccccCCCCC
Q 040887          143 GSSLTMAHSYFLSNPT-------------------------LAIDDTIKTNIINS-LVAIAYFLVSLDPKLSCCKNIEDK  196 (394)
Q Consensus       143 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~  196 (394)
                      +...........++-.                         .....++..+...+ ..++...+.+.+.+++ .....|.
T Consensus       397 ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n-~~s~~G~  475 (1143)
T KOG4177|consen  397 GADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPN-AVSKQGF  475 (1143)
T ss_pred             cCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcc-hhccccC
Confidence            4443322221111100                         01123344444444 7788888899999988 6777899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhC-CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHH
Q 040887          197 SPLSLAIEMGNTDVLEYILRSL-PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANV  275 (394)
Q Consensus       197 ~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~  275 (394)
                      ||||.|+..|+.++++.+++.. ..+.....+.+++|.+...+...+.+.+...|++++.++..|.||||.||.+|+.++
T Consensus       476 T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~  555 (1143)
T KOG4177|consen  476 TPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDL  555 (1143)
T ss_pred             cchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchH
Confidence            9999999999999999999876 335566789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040887          276 MVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR  355 (394)
Q Consensus       276 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  355 (394)
                      |++|++++++. +.+++.|+||||.|+..|+.+++++|+++|++       +|..|.+|.|||++|+..|+++++++|+.
T Consensus       556 VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~-------vna~d~~g~TpL~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  556 VKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS-------VNAADLDGFTPLHIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             HHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcCCC-------CCcccccCcchhHHHHHhcccchhhHHHh
Confidence            99999998887 88889999999999999999999999999999       99999999999999999999999999999


Q ss_pred             cCCCC-----CCCcccCCCcHHHHHHhhh
Q 040887          356 YGRSN-----PDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       356 ~g~ad-----~~~~~~~g~t~l~~a~~~~  379 (394)
                      .+ ++     +...+..|.+|..++....
T Consensus       628 ~~-~~~~~~~~~~e~~~g~~p~~v~e~~~  655 (1143)
T KOG4177|consen  628 VT-ATPAATDPVKENRKGAVPEDVAEELD  655 (1143)
T ss_pred             cc-CccccccchhhhhcccChhhHHHHhh
Confidence            99 88     7788889999999886654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.9e-37  Score=278.03  Aligned_cols=264  Identities=17%  Similarity=0.163  Sum_probs=224.6

Q ss_pred             CCCchHHHHHHh--cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHc-----CcHHHHHHHHhhccCCCCCCCCcchh
Q 040887           40 TDGSSLLHVAAK--SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARA-----GKLNTATALVDFAKHIPSTSQAPVDL  112 (394)
Q Consensus        40 ~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~ga~~~~~~~~~~~~  112 (394)
                      .+|.|+++.+..  .++.++|++|+++|+ +++..+..|.||||.|+.+     +..+++++|+++|++++         
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Ga-dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN---------  103 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGA-NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADIN---------  103 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCC-CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCC---------
Confidence            457787764443  458999999999977 8999999999999999864     67999999999999974         


Q ss_pred             hhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccC
Q 040887          113 LRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKN  192 (394)
Q Consensus       113 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (394)
                        .++..|.||||.|+..+..                                      ...+++++|++.|++++ .++
T Consensus       104 --~~d~~G~TpLh~a~~~~~~--------------------------------------~~~~iv~~Ll~~Gadvn-~~d  142 (489)
T PHA02798        104 --KKNSDGETPLYCLLSNGYI--------------------------------------NNLEILLFMIENGADTT-LLD  142 (489)
T ss_pred             --CCCCCcCcHHHHHHHcCCc--------------------------------------ChHHHHHHHHHcCCCcc-ccC
Confidence              5577799999999876410                                      12399999999999998 788


Q ss_pred             CCCCcHHHHHHHcCC---HHHHHHHHHhCCCC-CC-CCCCCChHHHHHhcC----CHHHHHHHHhcCccccccCCCCCcH
Q 040887          193 IEDKSPLSLAIEMGN---TDVLEYILRSLPSG-IS-WSSGKSPLQVATKKR----NLGVCYLLEVNGYSALKKNKETLYP  263 (394)
Q Consensus       193 ~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~-~~-~~~~~~~l~~a~~~~----~~~~~~~L~~~g~~~~~~~~~g~~~  263 (394)
                      ..|.||||+|+..++   .+++++|++.+... .. +..+.||||.++..+    +.+++++|++.|++++..+..|.++
T Consensus       143 ~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~  222 (489)
T PHA02798        143 KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKK  222 (489)
T ss_pred             CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccch
Confidence            899999999999988   99999999987553 22 356889999987653    6799999999999999999899988


Q ss_pred             HH-------HHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCc
Q 040887          264 IH-------LACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNT  336 (394)
Q Consensus       264 l~-------~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t  336 (394)
                      ++       .+...+..+++.+|+. + .+++.+|..|.||||+|+..|+.+++++|++.|++       ++.+|..|+|
T Consensus       223 ~~~~l~~l~~~~~~~~~~i~~~l~~-~-~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd-------in~~d~~G~T  293 (489)
T PHA02798        223 FMEYLNSLLYDNKRFKKNILDFIFS-Y-IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD-------INIITELGNT  293 (489)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHh-c-CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc-------ccccCCCCCc
Confidence            76       2344567788877765 4 45599999999999999999999999999999999       9999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCc
Q 040887          337 PLHLAALHGHSQVVYALLRYGRSNPDLK  364 (394)
Q Consensus       337 ~L~~A~~~~~~~~~~~Ll~~g~ad~~~~  364 (394)
                      |||+|+..++.++++.|++++ ++++..
T Consensus       294 pL~~A~~~~~~~iv~~lL~~~-~~~~~i  320 (489)
T PHA02798        294 CLFTAFENESKFIFNSILNKK-PNKNTI  320 (489)
T ss_pred             HHHHHHHcCcHHHHHHHHccC-CCHHHH
Confidence            999999999999999999999 787643

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=271.02  Aligned_cols=251  Identities=20%  Similarity=0.181  Sum_probs=210.6

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      +++|+.|+..|+.+.++++...+.++    +..+.+|.||||+|+..|+.+++++|++.|+ +++..+..+.||||.|+.
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~----n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINP----NFEIYDGISPIKLAMKFRDSEAIKLLMKHGA-IPDVKYPDIESELHDAVE   77 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCC----CccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CccccCCCcccHHHHHHH
Confidence            68999999999999999966556555    4578899999999999999999999999976 678888899999999999


Q ss_pred             cCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887           86 AGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI  165 (394)
Q Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (394)
                      .|+.+++++|++.|++...                                                             
T Consensus        78 ~g~~~~v~~Ll~~~~~~~~-------------------------------------------------------------   96 (413)
T PHA02875         78 EGDVKAVEELLDLGKFADD-------------------------------------------------------------   96 (413)
T ss_pred             CCCHHHHHHHHHcCCcccc-------------------------------------------------------------
Confidence            9999999999998765421                                                             


Q ss_pred             hhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHH
Q 040887          166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCY  244 (394)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~  244 (394)
                                              ..+..|.||||+|+..++.+++++|++.+.. +..+..|.||||.|+..|+.++++
T Consensus        97 ------------------------~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         97 ------------------------VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             ------------------------cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence                                    1233577888888888888888888887644 556677889999999999999999


Q ss_pred             HHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCC-chHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 040887          245 LLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNG-CNILHFAAKNGHADMVKAIIEIPGTNMTM  323 (394)
Q Consensus       245 ~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  323 (394)
                      +|++.|++++.++..|.||||+|+..|+.+++++|++.+++. +..+..| .||+|+|+..|+.+++++|+++|++    
T Consensus       153 ~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~-n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad----  227 (413)
T PHA02875        153 LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI-DYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD----  227 (413)
T ss_pred             HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcC----
Confidence            999999999999999999999999999999999999998877 5566665 5899999999999999999999998    


Q ss_pred             hhhcccc---CCCCCcHHHHHHHc---CCHHHHHHHH
Q 040887          324 DEVVNKM---DEDGNTPLHLAALH---GHSQVVYALL  354 (394)
Q Consensus       324 ~~~~~~~---~~~g~t~L~~A~~~---~~~~~~~~Ll  354 (394)
                         ++..   +..+.||++.++..   ...+.++.++
T Consensus       228 ---~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        228 ---CNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             ---cchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence               5543   67788999987643   3345555544

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=7e-36  Score=274.64  Aligned_cols=323  Identities=13%  Similarity=0.026  Sum_probs=234.6

Q ss_pred             HHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHH--hcCCHHHHHHHHHhCCCCcccccC---CC-----
Q 040887            7 PAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAA--KSGHGEITAKIAQYYPFLINKTNN---QG-----   76 (394)
Q Consensus         7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~---~g-----   76 (394)
                      ++++.|+.+|+.+.++++...+.++    +.+|.+|.||||.|+  ..|+.+++++|+++|+ +++..|.   .|     
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadi----n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga-~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDL----SVKCENHRSVIENYVMTDDPVPEIIDLFIENGC-SVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCC----CccCCCCccHHHHHHHccCCCHHHHHHHHHcCC-Ccccccccccccccccc
Confidence            5566677777777777755556665    568999999999654  5789999999999976 6765543   34     


Q ss_pred             ------CCHHHHHHH-----------cCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCcc-ceee
Q 040887           77 ------DTPLHCAAR-----------AGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRV-NVWR  138 (394)
Q Consensus        77 ------~t~L~~A~~-----------~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~-~~~~  138 (394)
                            .||||+|+.           .++.+++++|+++|+++           +..|..|.||||.|+..++.. .+.+
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv-----------n~~d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP-----------SSIDKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc-----------ccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence                  599999986           45899999999999997           456778999999999998753 3444


Q ss_pred             ecccCCchhhhhhcccCCcccchhhhhhhhh-------h--hhHHHHHHHHHhcCCCCccc------c------------
Q 040887          139 TSIAGSSLTMAHSYFLSNPTLAIDDTIKTNI-------I--NSLVAIAYFLVSLDPKLSCC------K------------  191 (394)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~l~~~~~~~~~~------~------------  191 (394)
                      .+..+...............    .+...+.       .  ....++++.|++.|.+....      .            
T Consensus       249 ~Li~g~d~~~~~~~~~~~~~----~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~  324 (661)
T PHA02917        249 LLMKGIDNTAYSYIDDLTCC----TRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILK  324 (661)
T ss_pred             HHHhCCcccccccccCcccc----cchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHH
Confidence            45554432211000000000    0001111       1  22669999999999764210      0            


Q ss_pred             CCCCCcHHHHH---HHcCC--HHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHh-cCccccccCCCCCcHH
Q 040887          192 NIEDKSPLSLA---IEMGN--TDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEV-NGYSALKKNKETLYPI  264 (394)
Q Consensus       192 ~~~~~~~l~~a---~~~~~--~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g~~~l  264 (394)
                      ...+.++++.+   +..|.  .+++++|++.++. +..+..|.++.    .....+++++|+. .|++++..+..|.|||
T Consensus       325 ~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL  400 (661)
T PHA02917        325 TMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPI  400 (661)
T ss_pred             HhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCccccCCCCCChh
Confidence            11233344433   34565  5699999998765 55556666643    3445556666665 7888777778899999


Q ss_pred             HHHHHcC-----------------------CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCC
Q 040887          265 HLACKNG-----------------------HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNM  321 (394)
Q Consensus       265 ~~a~~~~-----------------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  321 (394)
                      |.|++.+                       ..++++.|+.++++. +.+|..|.||||+|+..++.+++++|++.|++  
T Consensus       401 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdI-N~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAd--  477 (661)
T PHA02917        401 GHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDI-NMIDKRGETLLHKAVRYNKQSLVSLLLESGSD--  477 (661)
T ss_pred             HHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCC-CCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCC--
Confidence            9988543                       256779999988776 88999999999999999999999999999999  


Q ss_pred             cchhhccccCCCCCcHHHHHHH-cCCHHHHHHHHhcCCCCCC
Q 040887          322 TMDEVVNKMDEDGNTPLHLAAL-HGHSQVVYALLRYGRSNPD  362 (394)
Q Consensus       322 ~~~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~g~ad~~  362 (394)
                           ++.++..|+||||+|+. .++.+++++|+.+| ++++
T Consensus       478 -----in~~d~~G~T~L~~A~~~~~~~~iv~~LL~~g-a~i~  513 (661)
T PHA02917        478 -----VNIRSNNGYTCIAIAINESRNIELLKMLLCHK-PTLD  513 (661)
T ss_pred             -----CCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcC-CChh
Confidence                 99999999999999996 78999999999999 8876

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-35  Score=262.01  Aligned_cols=294  Identities=14%  Similarity=0.094  Sum_probs=231.1

Q ss_pred             hcCCCCchHHHHHHh-cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH-cCcHHHHHHHHhhccCCCCCCCCcch---
Q 040887           37 KVLTDGSSLLHVAAK-SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR-AGKLNTATALVDFAKHIPSTSQAPVD---  111 (394)
Q Consensus        37 ~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~~~~~~~~~---  111 (394)
                      ..+.+|.+|+|+-|. .|+.|+|++|+.+|+ +++.++..|.||+|+|+. .++.|++++|+++||++++....+.+   
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~GA-dvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~  144 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISKGL-EINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIII  144 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHcCC-CcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhh
Confidence            367788899986655 789999999999976 899999999999999976 69999999999999997653322211   


Q ss_pred             ----------------------hhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhh
Q 040887          112 ----------------------LLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNI  169 (394)
Q Consensus       112 ----------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (394)
                                            .++..+..|.||||+++..+....                                  
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~----------------------------------  190 (631)
T PHA02792        145 EQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDG----------------------------------  190 (631)
T ss_pred             hhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCccc----------------------------------
Confidence                                  234566778888888887651000                                  


Q ss_pred             hhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHhCCC--------------CC------CC---
Q 040887          170 INSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMG--NTDVLEYILRSLPS--------------GI------SW---  224 (394)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~--------------~~------~~---  224 (394)
                      ..-..++++.|+++|.+++ .++..|.||||+|+...  ..+++++|++....              ..      .+   
T Consensus       191 ~~~~~~v~k~Li~~g~~~~-~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~i  269 (631)
T PHA02792        191 YATSLDVINYLISHEKEMR-YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYI  269 (631)
T ss_pred             ccCCHHHHHHHHhCCCCcC-ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHH
Confidence            0002399999999999998 57778999999999999  88999998875321              00      00   


Q ss_pred             ----CCCC------------------------------ChHHHHHhcC--CHHHHHHHHhcCccccccCCCCCcHHHHHH
Q 040887          225 ----SSGK------------------------------SPLQVATKKR--NLGVCYLLEVNGYSALKKNKETLYPIHLAC  268 (394)
Q Consensus       225 ----~~~~------------------------------~~l~~a~~~~--~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~  268 (394)
                          -.|.                              ..||.-...+  ..+++++|++.|++...  .....+++.|+
T Consensus       270 v~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa  347 (631)
T PHA02792        270 VDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKF  347 (631)
T ss_pred             HHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHH
Confidence                0011                              1222333444  33889999999998752  23556789999


Q ss_pred             HcCCHHHHHHHHHhcCCCCccccCCC--chHHHHHHHcCCH---HHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887          269 KNGHANVMVELLKEWRCPSLFVTDNG--CNILHFAAKNGHA---DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL  343 (394)
Q Consensus       269 ~~~~~~~v~~Ll~~~~~~~~~~~~~g--~t~L~~A~~~~~~---~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  343 (394)
                      ..|+.+++++|++++++. +.+|..|  .||||+|......   +++++|+++|++       +|.+|..|+||||+|+.
T Consensus       348 ~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-------IN~kD~~G~TPLh~Aa~  419 (631)
T PHA02792        348 DNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-------INKIDKHGRSILYYCIE  419 (631)
T ss_pred             HcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-------cccccccCcchHHHHHH
Confidence            999999999999998776 7777664  6999998877654   468999999999       99999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHh
Q 040887          344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR  377 (394)
Q Consensus       344 ~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~  377 (394)
                      .++.+++++|+++| ++++.+|..|.||+++|..
T Consensus       420 ~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        420 SHSVSLVEWLIDNG-ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             cCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH
Confidence            99999999999999 9999999999999999976

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-35  Score=268.97  Aligned_cols=270  Identities=15%  Similarity=0.148  Sum_probs=224.5

Q ss_pred             CHHHHHHHHHhCCCCcccccCCCCCHHHHHHHc--CcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHh
Q 040887           54 HGEITAKIAQYYPFLINKTNNQGDTPLHCAARA--GKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFML  131 (394)
Q Consensus        54 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  131 (394)
                      ..+.|+.|+..+.  ++.. ..|.|+++.+...  ++.+++++|+++|++++           ..+..|.||||.++...
T Consensus        17 ~~~~v~~ll~~~~--~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn-----------~~d~~g~TpL~~~~~n~   82 (489)
T PHA02798         17 KLSTVKLLIKSCN--PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVN-----------GLDNEYSTPLCTILSNI   82 (489)
T ss_pred             cHHHHHHHHhcCC--hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCC-----------CCCCCCCChHHHHHHhH
Confidence            4689999997643  3333 4577887755544  47999999999999984           45677999999987531


Q ss_pred             CccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC---CH
Q 040887          132 GRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMG---NT  208 (394)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~---~~  208 (394)
                                                          ....+..+++++|++.|++++ .++..|.||||+|+..+   +.
T Consensus        83 ------------------------------------~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~  125 (489)
T PHA02798         83 ------------------------------------KDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNL  125 (489)
T ss_pred             ------------------------------------HhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChH
Confidence                                                001123499999999999988 68889999999999875   78


Q ss_pred             HHHHHHHHhCCC-CCCCCCCCChHHHHHhcCC---HHHHHHHHhcCccccccC-CCCCcHHHHHHHc----CCHHHHHHH
Q 040887          209 DVLEYILRSLPS-GISWSSGKSPLQVATKKRN---LGVCYLLEVNGYSALKKN-KETLYPIHLACKN----GHANVMVEL  279 (394)
Q Consensus       209 ~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~---~~~~~~L~~~g~~~~~~~-~~g~~~l~~a~~~----~~~~~v~~L  279 (394)
                      +++++|++.+.. +..+..|.||||+|+..++   .+++++|++.|++++..+ ..|.||||.++..    ++.+++++|
T Consensus       126 ~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~L  205 (489)
T PHA02798        126 EILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLF  205 (489)
T ss_pred             HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHH
Confidence            999999997655 6777899999999999987   799999999999999875 5789999998764    479999999


Q ss_pred             HHhcCCCCccccCCCchHHH-------HHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887          280 LKEWRCPSLFVTDNGCNILH-------FAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA  352 (394)
Q Consensus       280 l~~~~~~~~~~~~~g~t~L~-------~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  352 (394)
                      ++++... +..+..|.++++       ++...++.+++++|+. +++       +|.+|..|+||||+|+.+|+.+++++
T Consensus       206 i~~Ga~i-~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-------vN~~d~~G~TPL~~A~~~~~~~~v~~  276 (489)
T PHA02798        206 VDNGFII-NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-------INQVDELGFNPLYYSVSHNNRKIFEY  276 (489)
T ss_pred             HHCCCCc-ccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-------CCCcCcCCccHHHHHHHcCcHHHHHH
Confidence            9998766 777888888876       2445577889998876 577       99999999999999999999999999


Q ss_pred             HHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          353 LLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       353 Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      |+++| ||++.+|..|+|||++|++.+..+..
T Consensus       277 LL~~G-Adin~~d~~G~TpL~~A~~~~~~~iv  307 (489)
T PHA02798        277 LLQLG-GDINIITELGNTCLFTAFENESKFIF  307 (489)
T ss_pred             HHHcC-CcccccCCCCCcHHHHHHHcCcHHHH
Confidence            99999 99999999999999999998876543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.7e-35  Score=253.06  Aligned_cols=210  Identities=28%  Similarity=0.367  Sum_probs=182.5

Q ss_pred             chHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCc
Q 040887           43 SSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNT  122 (394)
Q Consensus        43 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t  122 (394)
                      .+-++.|++.|..+.|+.|++..+.+++..|.+|.|+||.|+.+++.+++++|+++||++++..+               
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG---------------  109 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGG---------------  109 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCC---------------
Confidence            45688999999999999999985568999999999999999999999999999999999864422               


Q ss_pred             HHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHH
Q 040887          123 ALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLA  202 (394)
Q Consensus       123 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a  202 (394)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (600)
T KOG0509|consen  110 --------------------------------------------------------------------------------  109 (600)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 040887          203 IEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKE  282 (394)
Q Consensus       203 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~  282 (394)
                                            .-+.||||+|+++|+..++.+|+++|++++.+|.+|.+|+|.|++.|+.-+|.+|+.+
T Consensus       110 ----------------------~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~  167 (600)
T KOG0509|consen  110 ----------------------VLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK  167 (600)
T ss_pred             ----------------------CCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHh
Confidence                                  1234666666666677777777788999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 040887          283 WRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD-EDGNTPLHLAALHGHSQVVYALLRYGRSNP  361 (394)
Q Consensus       283 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~  361 (394)
                      +.+. +.+|.+|+||||+|+..|....++.|++.|+.       ++.+| ..|+||||+|+..|+..+++ |+..|+++.
T Consensus       168 ~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~-------~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~  238 (600)
T KOG0509|consen  168 GADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS-------LLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADL  238 (600)
T ss_pred             cccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhccc-------ccccccccCCchHHHHHhcCCcceEe-hhhhcCCcc
Confidence            8554 89999999999999999998889999999998       78877 89999999999999999999 444444999


Q ss_pred             CCcccCCCcHHHHHHhh
Q 040887          362 DLKNKQGMTAYKMALRE  378 (394)
Q Consensus       362 ~~~~~~g~t~l~~a~~~  378 (394)
                      +.+|.+|+||+++|..+
T Consensus       239 d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  239 DKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccCCCCHHHHHHHh
Confidence            99999999999999766

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.3e-33  Score=246.34  Aligned_cols=320  Identities=10%  Similarity=0.026  Sum_probs=233.6

Q ss_pred             HHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHh-cCCHHHHHHHHHhCCC---------------------
Q 040887           10 FEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAK-SGHGEITAKIAQYYPF---------------------   67 (394)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~---------------------   67 (394)
                      ..|..+|++|.++.+...++++    +.++..|.||+|+|+. .|+.|++++|+++|+.                     
T Consensus        77 ~~~s~n~~lElvk~LI~~GAdv----N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~  152 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLEI----NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEY  152 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCCc----ccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccc
Confidence            3577889999999977778887    6678889999999976 6999999999999852                     


Q ss_pred             --------------CcccccCCCCCHHHHHHHcC-------cHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHH
Q 040887           68 --------------LINKTNNQGDTPLHCAARAG-------KLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHE  126 (394)
Q Consensus        68 --------------~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~  126 (394)
                                    .++..|..|.||||+|+.++       +.|+++.|+++|++++           ..|..|.||||+
T Consensus       153 ~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-----------~~d~~g~t~l~~  221 (631)
T PHA02792        153 YNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-----------YYTYREHTTLYY  221 (631)
T ss_pred             cchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-----------ccCCCCChHHHH
Confidence                          12344567999999999999       8999999999999974           456779999999


Q ss_pred             HHHHh--CccceeeecccCCchhhhhhcccCCcccchhhhhhhhh----hhhHHHHHHHHHhcCC--CCccccCC-----
Q 040887          127 ALFML--GRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNI----INSLVAIAYFLVSLDP--KLSCCKNI-----  193 (394)
Q Consensus       127 a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~--~~~~~~~~-----  193 (394)
                      ++...  ....+. .+.......       ..+......-+...-    ..-...++..|++.+.  ++-.....     
T Consensus       222 ~~~~~~i~~ei~~-~L~~~~~~~-------~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~  293 (631)
T PHA02792        222 YVDKCDIKREIFD-ALFDSNYSG-------NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNI  293 (631)
T ss_pred             HHHcccchHHHHH-HHHhccccc-------cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhh
Confidence            99987  333222 222211100       000000000000000    0112246677776655  21111110     


Q ss_pred             -----------CCCcHHHHHHHcC--CHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCC
Q 040887          194 -----------EDKSPLSLAIEMG--NTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET  260 (394)
Q Consensus       194 -----------~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g  260 (394)
                                 .-+..||.-..++  +.+++++|++.+..... ......++.|+..++.+++++|+++|++++.++..|
T Consensus       294 ~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r-~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g  372 (631)
T PHA02792        294 IISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR-FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNI  372 (631)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc-CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCC
Confidence                       0122345555555  67899999998876432 235667889999999999999999999999998775


Q ss_pred             --CcHHHHHHHcCCHH---HHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC
Q 040887          261 --LYPIHLACKNGHAN---VMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN  335 (394)
Q Consensus       261 --~~~l~~a~~~~~~~---~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~  335 (394)
                        .||||.|+.....+   ++++|++.+++. +.+|..|.||||+|+..++.+++++|+++|++       ++.+|..|+
T Consensus       373 ~~~TpLh~A~~n~~~~v~~IlklLIs~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD-------IN~kD~~G~  444 (631)
T PHA02792        373 INIMPLFPTLSIHESDVLSILKLCKPYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNGAD-------INITTKYGS  444 (631)
T ss_pred             CChhHHHHHHHhccHhHHHHHHHHHhcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCC-------CCCcCCCCC
Confidence              69999987766654   577788887766 88999999999999999999999999999999       999999999


Q ss_pred             cHHHHHHH--cC--------CHHHHHHHHhcCCCCCC
Q 040887          336 TPLHLAAL--HG--------HSQVVYALLRYGRSNPD  362 (394)
Q Consensus       336 t~L~~A~~--~~--------~~~~~~~Ll~~g~ad~~  362 (394)
                      ||||+|+.  .+        ..++++.|+++| .++.
T Consensus       445 TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~-p~i~  480 (631)
T PHA02792        445 TCIGICVILAHACIPEIAELYIKILEIILSKL-PTIE  480 (631)
T ss_pred             CHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-CChh
Confidence            99999976  22        256799999998 5554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.8e-33  Score=240.79  Aligned_cols=210  Identities=24%  Similarity=0.312  Sum_probs=147.5

Q ss_pred             CCHHHHHHHHhccchhhhhccCC-ccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCccccc-CCCCCHHHH
Q 040887            5 LDPAYFEAAIRGNIDDFLFSDIP-KQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTN-NQGDTPLHC   82 (394)
Q Consensus         5 ~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~   82 (394)
                      .-..++.|++.|+++.++....+ +.++    +..|++|.|+|||||.+++.+++++|+++|+ ++|+.+ .-+.||||.
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v----~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga-dvn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESV----NNPDREGVTLLHWAAINNRLDVARYLISHGA-DVNAIGGVLGSTPLHW  118 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCC----CCCCcCCccceeHHHHcCcHHHHHHHHHcCC-CccccCCCCCCCcchH
Confidence            35678999999999999995555 4544    7799999999999999999999999999987 799988 778999999


Q ss_pred             HHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchh
Q 040887           83 AARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAID  162 (394)
Q Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (394)
                      |+++|++.+|++|+++||++.                                                           
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt-----------------------------------------------------------  139 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPT-----------------------------------------------------------  139 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCc-----------------------------------------------------------
Confidence            999999999999999999974                                                           


Q ss_pred             hhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHH
Q 040887          163 DTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGV  242 (394)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~  242 (394)
                                                 .+|..|.+|+|.|++.++.-++-+++..                         
T Consensus       140 ---------------------------~~D~~G~~~lHla~~~~~~~~vayll~~-------------------------  167 (600)
T KOG0509|consen  140 ---------------------------LKDKQGLTPLHLAAQFGHTALVAYLLSK-------------------------  167 (600)
T ss_pred             ---------------------------eecCCCCcHHHHHHHhCchHHHHHHHHh-------------------------
Confidence                                       3555677777777777666666665543                         


Q ss_pred             HHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 040887          243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT  322 (394)
Q Consensus       243 ~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  322 (394)
                             |++++.+|.+|+||||+|+.+|....++.|++-++......+..|+||||+|+..|+...+++|++.|++   
T Consensus       168 -------~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~---  237 (600)
T KOG0509|consen  168 -------GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD---  237 (600)
T ss_pred             -------cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCc---
Confidence                   4555555555555555555555555455555554444222225555555555555555555533333343   


Q ss_pred             chhhccccCCCCCcHHHHHHHc
Q 040887          323 MDEVVNKMDEDGNTPLHLAALH  344 (394)
Q Consensus       323 ~~~~~~~~~~~g~t~L~~A~~~  344 (394)
                          .+.+|.+|.||+.+|...
T Consensus       238 ----~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  238 ----LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ----ccccccCCCCHHHHHHHh
Confidence                455555555555555443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.4e-33  Score=229.56  Aligned_cols=81  Identities=33%  Similarity=0.450  Sum_probs=73.1

Q ss_pred             ccCCCchHHHHHHHcC-------------CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040887          290 VTDNGCNILHFAAKNG-------------HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY  356 (394)
Q Consensus       290 ~~~~g~t~L~~A~~~~-------------~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  356 (394)
                      +...|.||||+|+..+             +..+++.|++.|++       +|++|.+|+||||+|+++....++..|++.
T Consensus       478 r~~~~ft~LH~av~~~tt~~gry~v~~fPs~~V~k~Llecgad-------vna~D~~~ntplHIa~~~~~~si~~aLie~  550 (615)
T KOG0508|consen  478 RGKNGFTLLHLAVDKNTTNVGRYPVCRFPSAHVTKVLLECGAD-------VNARDFDNNTPLHIAAQNNCPSIVNALIEA  550 (615)
T ss_pred             cccCCCchhhhhhccCCCCCCcccccCCcHHHHHHHHHHcCCC-------CCcccCCCCchhHHHHHhccHHHHHHHHHc
Confidence            4568999999999763             45899999999999       999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCcHHHHHHhh
Q 040887          357 GRSNPDLKNKQGMTAYKMALRE  378 (394)
Q Consensus       357 g~ad~~~~~~~g~t~l~~a~~~  378 (394)
                      |.- .+++|..|+|++++....
T Consensus       551 Gah-~datN~~~~t~~~ll~~~  571 (615)
T KOG0508|consen  551 GAH-LDATNAHKKTALDLLDEK  571 (615)
T ss_pred             ccc-hhhhhhccccHHHHhchh
Confidence            988 789999999999876543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.98  E-value=7.8e-31  Score=209.50  Aligned_cols=175  Identities=18%  Similarity=0.178  Sum_probs=157.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcC--CHHHHHHHHhcCccccccC-CCCCcHHHHHHHc
Q 040887          194 EDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKR--NLGVCYLLEVNGYSALKKN-KETLYPIHLACKN  270 (394)
Q Consensus       194 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~g~~~~~~~-~~g~~~l~~a~~~  270 (394)
                      .+.+||+.|+..++.+.++.|++..  +..+..|.||||+|+..+  +.+++++|++.|++++.++ ..|.||||+|+..
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~~--n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~   97 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKFV--NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSF   97 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHhh--hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh
Confidence            5689999999999999999999763  456688999999999865  7899999999999999987 5899999998764


Q ss_pred             ---CCHHHHHHHHHhcCCCCccccCCCchHHHHHHH--cCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHH-HHHc
Q 040887          271 ---GHANVMVELLKEWRCPSLFVTDNGCNILHFAAK--NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHL-AALH  344 (394)
Q Consensus       271 ---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~  344 (394)
                         ++.+++++|++++.+. +.+|..|.||||+|+.  .++.+++++|++.|++       ++.+|..|+||||. |+..
T Consensus        98 ~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-------in~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         98 NKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-------FLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             CccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-------cccccCCCCcHHHHHHHhc
Confidence               4799999999987666 8899999999999986  4689999999999999       99999999999995 5678


Q ss_pred             CCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887          345 GHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       345 ~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~  379 (394)
                      ++.+++++|+++| ++++.+|..|+||+++|..++
T Consensus       170 ~~~~iv~~Ll~~G-adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSLG-IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhhh
Confidence            8999999999999 999999999999999998764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.5e-29  Score=199.99  Aligned_cols=182  Identities=14%  Similarity=0.125  Sum_probs=143.8

Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcC--cHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887           38 VLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG--KLNTATALVDFAKHIPSTSQAPVDLLRM  115 (394)
Q Consensus        38 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  115 (394)
                      ....+.||||+|+..|+.+.|+.|+..    ++..+..|.||||+|+..+  +.+++++|+++|++++..          
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~----------   82 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFK----------   82 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCcc----------
Confidence            345678999999999999999999875    4567888999999999854  889999999998887421          


Q ss_pred             hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887          116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED  195 (394)
Q Consensus       116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  195 (394)
                                                                                                 .+..|
T Consensus        83 ---------------------------------------------------------------------------~~~~g   87 (209)
T PHA02859         83 ---------------------------------------------------------------------------TRDNN   87 (209)
T ss_pred             ---------------------------------------------------------------------------CCCCC
Confidence                                                                                       11235


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHH--cCCH
Q 040887          196 KSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACK--NGHA  273 (394)
Q Consensus       196 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~--~~~~  273 (394)
                      .||||+|+..+.                             .+..+++++|++.|++++.++..|.||||.|+.  .++.
T Consensus        88 ~TpLh~a~~~~~-----------------------------~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~  138 (209)
T PHA02859         88 LSALHHYLSFNK-----------------------------NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRI  138 (209)
T ss_pred             CCHHHHHHHhCc-----------------------------cccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCH
Confidence            556655443210                             123466777777889999999999999999876  4678


Q ss_pred             HHHHHHHHhcCCCCccccCCCchHHHH-HHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcC
Q 040887          274 NVMVELLKEWRCPSLFVTDNGCNILHF-AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG  345 (394)
Q Consensus       274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  345 (394)
                      +++++|++.+.+. +.+|..|.||||. |+..++.+++++|++.|++       ++.+|..|.||||+|..++
T Consensus       139 ~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad-------i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        139 NVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDKKIFDFLTSLGID-------INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC-------CCCCCCCCCCHHHHHhhhh
Confidence            9999999887665 7889999999995 5667899999999999998       8999999999999998764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=209.53  Aligned_cols=220  Identities=18%  Similarity=0.010  Sum_probs=131.0

Q ss_pred             HHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccce
Q 040887           57 ITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNV  136 (394)
Q Consensus        57 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  136 (394)
                      +.++++.+|. +++....+|     +|+..+..|++++|+++|++++-.+.     +-..+..++|+||.++..+.    
T Consensus        64 ~~~~~~~~~~-~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~-----~~~~~~~~~~~L~~~~~n~~----  128 (437)
T PHA02795         64 LYDYFRIHRD-NIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSI-----IIKNCNSVQDLLLYYLSNAY----  128 (437)
T ss_pred             HHHHHHHcCc-chhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhh-----hhhccccccHHHHHHHHhcC----
Confidence            3467777765 677776666     88889999999999999998742211     11245557777777776431    


Q ss_pred             eeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 040887          137 WRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR  216 (394)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  216 (394)
                                                         +..+++++|+++|++++.   .++.||+|.|+..++.+++++|++
T Consensus       129 -----------------------------------n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls  170 (437)
T PHA02795        129 -----------------------------------VEIDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILN  170 (437)
T ss_pred             -----------------------------------CCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHh
Confidence                                               123777777777777653   233567777777777777777776


Q ss_pred             hCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCch
Q 040887          217 SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCN  296 (394)
Q Consensus       217 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  296 (394)
                      .+......  +.+|+                        .+..+.+++|.|+..++.+++++|++++++. +.+|..|.|
T Consensus       171 ~Ga~~~n~--~~~~l------------------------~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~T  223 (437)
T PHA02795        171 CGIPDEND--VKLDL------------------------YKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRT  223 (437)
T ss_pred             cCCccccc--ccchh------------------------hhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCC
Confidence            65421110  00000                        0112445556666666666666666555443 555666666


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCC--------HHHHHHHHhcCCCCCCCc
Q 040887          297 ILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH--------SQVVYALLRYGRSNPDLK  364 (394)
Q Consensus       297 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--------~~~~~~Ll~~g~ad~~~~  364 (394)
                      |||+|+..|+.+++++|+++|++       ++.+|..|.||||+|+..|+        .+++++|+++| ++++..
T Consensus       224 pLh~Aa~~g~~eiVelLL~~GAd-------IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g-adI~~~  291 (437)
T PHA02795        224 LLYRAIYAGYIDLVSWLLENGAN-------VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP-LSIDCI  291 (437)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-------CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC-CCCCch
Confidence            66666666666666666666665       56666666666666665552        35666666655 555443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=5.7e-28  Score=206.90  Aligned_cols=190  Identities=15%  Similarity=0.064  Sum_probs=168.1

Q ss_pred             HHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-C------CCCCCCCChHHHHHh--cCCHHHHHH
Q 040887          175 AIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-G------ISWSSGKSPLQVATK--KRNLGVCYL  245 (394)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~------~~~~~~~~~l~~a~~--~~~~~~~~~  245 (394)
                      ...++++++|.+++. +..+|     +|+..+..+++++|+..+.. +      ..+..++|+||+++.  .++.+++++
T Consensus        63 ~~~~~~~~~~~~i~~-~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~  136 (437)
T PHA02795         63 VLYDYFRIHRDNIDQ-YIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDF  136 (437)
T ss_pred             HHHHHHHHcCcchhh-hhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHH
Confidence            456789999998873 33333     89999999999999998766 3      366779999999999  888899999


Q ss_pred             HHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc-----CCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q 040887          246 LEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT-----DNGCNILHFAAKNGHADMVKAIIEIPGTN  320 (394)
Q Consensus       246 L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-----~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  320 (394)
                      |+++|++++..  .+.||+|.|+..++.+++++|+.++..+.+..+     ..+.+++|.|...++.+++++|+++|++ 
T Consensus       137 LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-  213 (437)
T PHA02795        137 MVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-  213 (437)
T ss_pred             HHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-
Confidence            99999999874  458999999999999999999999875434332     3478999999999999999999999999 


Q ss_pred             CcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhh
Q 040887          321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY  380 (394)
Q Consensus       321 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~  380 (394)
                            +|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|.
T Consensus       214 ------IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        214 ------INQLDAGGRTLLYRAIYAGYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             ------cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCC
Confidence                  9999999999999999999999999999999 9999999999999999999985

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.96  E-value=1.7e-29  Score=228.20  Aligned_cols=319  Identities=18%  Similarity=0.153  Sum_probs=274.5

Q ss_pred             cccCCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHH
Q 040887            2 EEVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLH   81 (394)
Q Consensus         2 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   81 (394)
                      |.-++|+|-.||..|..|.+..+...+.++    +.+|+.|.+||..|+-.|+..+|+.|+.+....--+.|..+.|+|.
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rgani----ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANI----EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLS  829 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccc----cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEE
Confidence            455789999999999999999977777777    6689999999999999999999999999866434456889999999


Q ss_pred             HHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccch
Q 040887           82 CAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAI  161 (394)
Q Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (394)
                      +||..|+.++|++||..|++-           ..++-...||+..+..-+                              
T Consensus       830 lacsggr~~vvelLl~~gank-----------ehrnvsDytPlsla~Sgg------------------------------  868 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNAGANK-----------EHRNVSDYTPLSLARSGG------------------------------  868 (2131)
T ss_pred             EecCCCcchHHHHHHHhhccc-----------cccchhhcCchhhhcCcc------------------------------
Confidence            999999999999999999875           334555677777665433                              


Q ss_pred             hhhhhhhhhhhHHHHHHHHHhcCCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHhCCC--CCCCCCCCChHHHHHhcC
Q 040887          162 DDTIKTNIINSLVAIAYFLVSLDPKLSCCK-NIEDKSPLSLAIEMGNTDVLEYILRSLPS--GISWSSGKSPLQVATKKR  238 (394)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~~  238 (394)
                                 ..+++..|++.|..++... ...|-.||.+|..+|+...++.|++.+.+  .....+..|.|-+|+..|
T Consensus       869 -----------y~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqg  937 (2131)
T KOG4369|consen  869 -----------YTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQG  937 (2131)
T ss_pred             -----------hHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccC
Confidence                       3499999999999888543 33478999999999999999999987655  223356779999999999


Q ss_pred             CHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcc-ccCCCchHHHHHHHcCCHHHHHHHHhCC
Q 040887          239 NLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLF-VTDNGCNILHFAAKNGHADMVKAIIEIP  317 (394)
Q Consensus       239 ~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  317 (394)
                      ..+++.+|+...+++..+-+-|.|||+-++..|.+++-+.|+..+++.... .-....|+|.+++..|+...+++|+...
T Consensus       938 r~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~ 1017 (2131)
T KOG4369|consen  938 RPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD 1017 (2131)
T ss_pred             cchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCc
Confidence            999999999999999999999999999999999999999999998876322 2335678999999999999999999988


Q ss_pred             CCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          318 GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       318 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +.       +..+|++|.|+|.+|+..|....+..|++++ +|++..|+...++++-|.++|..+..
T Consensus      1018 at-------v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~-ad~d~qdnr~~S~~maafRKgh~~iV 1076 (2131)
T KOG4369|consen 1018 AT-------VRVPNKKGCTVLWLASAGGALSSCPILVSSV-ADADQQDNRTNSRTMAAFRKGHFAIV 1076 (2131)
T ss_pred             cc-------eecccCCCCcccchhccCCccccchHHhhcc-cChhhhhcccccccHHHHHhchhhee
Confidence            88       9999999999999999999999999999999 99999999999999999999987654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=9.5e-27  Score=221.89  Aligned_cols=241  Identities=20%  Similarity=0.211  Sum_probs=159.6

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHhC-CCCcccccCCCCCHHH-HHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhh
Q 040887           40 TDGSSLLHVAAKSGHGEITAKIAQYY-PFLINKTNNQGDTPLH-CAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMEN  117 (394)
Q Consensus        40 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  117 (394)
                      .++.+.++.||+.|+.+.++.+++.+ +.++|..|..|+|||| .|+.+++.+++++|++.|+               .+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~---------------~~   79 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC---------------RG   79 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC---------------CC
Confidence            34678899999999999999998872 3468888899999999 8888889999999998865               24


Q ss_pred             hcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCc
Q 040887          118 AMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKS  197 (394)
Q Consensus       118 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  197 (394)
                      ..|.||||.|+...                                      ......++..+...+....        .
T Consensus        80 ~~G~T~Lh~A~~~~--------------------------------------~~~v~~ll~~l~~~~~~~~--------~  113 (743)
T TIGR00870        80 AVGDTLLHAISLEY--------------------------------------VDAVEAILLHLLAAFRKSG--------P  113 (743)
T ss_pred             CcChHHHHHHHhcc--------------------------------------HHHHHHHHHHHhhcccccC--------c
Confidence            55888888887522                                      0011133333333322100        0


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccC--------------CCCCcH
Q 040887          198 PLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN--------------KETLYP  263 (394)
Q Consensus       198 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~--------------~~g~~~  263 (394)
                      +              .+. ..........|.||||.|+..++.+++++|++.|++++.++              ..|.+|
T Consensus       114 ~--------------~~~-~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tp  178 (743)
T TIGR00870       114 L--------------ELA-NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESP  178 (743)
T ss_pred             h--------------hhh-ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccH
Confidence            0              000 00001112334455555555555555555555555544332              357899


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC---------CHHHHHHHHhCCCCCCcchhhccccCCCC
Q 040887          264 IHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG---------HADMVKAIIEIPGTNMTMDEVVNKMDEDG  334 (394)
Q Consensus       264 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g  334 (394)
                      ||.|+..|+.++++.|++++++. +..|..|+||||+|+..+         ...+.+++++.++.........+..|.+|
T Consensus       179 L~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g  257 (743)
T TIGR00870       179 LNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQG  257 (743)
T ss_pred             HHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCC
Confidence            99999999999999999877654 888889999999998886         23455666666555222222236778899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcC
Q 040887          335 NTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       335 ~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      .||||+|+..|+.+++++|++.+
T Consensus       258 ~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       258 LTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             CCchhhhhhcCCccHHHHHHHHH
Confidence            99999999999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=4.9e-28  Score=180.49  Aligned_cols=167  Identities=21%  Similarity=0.216  Sum_probs=81.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHH
Q 040887          195 DKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHAN  274 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~  274 (394)
                      +++|+.+++...+.+.+..+.+. ..+..+..|.|||.+|+..|+..++++|++.|++++...+...++|..|++.|..+
T Consensus       129 p~s~~slsVhql~L~~~~~~~~n-~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytd  207 (296)
T KOG0502|consen  129 PWSPLSLSVHQLHLDVVDLLVNN-KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTD  207 (296)
T ss_pred             cCChhhHHHHHHHHHHHHHHhhc-cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHH
Confidence            44555555544444433333221 22333444555555555555555555555555555544444445555555555555


Q ss_pred             HHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887          275 VMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL  354 (394)
Q Consensus       275 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  354 (394)
                      +|+.|+....+. |..|-+|-|||-||++.++.++++.|+..|++       ++..+..|++++..|+..|+. +|+..+
T Consensus       208 iV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd-------~t~e~dsGy~~mdlAValGyr-~Vqqvi  278 (296)
T KOG0502|consen  208 IVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLNSGAD-------VTQEDDSGYWIMDLAVALGYR-IVQQVI  278 (296)
T ss_pred             HHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHhcCCC-------cccccccCCcHHHHHHHhhhH-HHHHHH
Confidence            555555544443 44555555555555555555555555555555       455555555555555555544 444444


Q ss_pred             hcCCCCCCCcccCCCcHH
Q 040887          355 RYGRSNPDLKNKQGMTAY  372 (394)
Q Consensus       355 ~~g~ad~~~~~~~g~t~l  372 (394)
                      +.. ++....|..-++|+
T Consensus       279 e~h-~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  279 EKH-ALKLCQDSEKRTPL  295 (296)
T ss_pred             HHH-HHHHhhcccCCCCC
Confidence            444 44444444444443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.95  E-value=8.8e-27  Score=203.75  Aligned_cols=175  Identities=30%  Similarity=0.375  Sum_probs=128.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhC-CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCH
Q 040887          195 DKSPLSLAIEMGNTDVLEYILRSL-PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA  273 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~  273 (394)
                      |.+|||+|++.|+.++++.++... ..+.....|.+|||.|+..++.+++.+|+.+|++.-.++.++.|+|..|++.|..
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRA  161 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhh
Confidence            444444444444444444444332 1233445566677777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhcCCC-------CccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCC
Q 040887          274 NVMVELLKEWRCP-------SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH  346 (394)
Q Consensus       274 ~~v~~Ll~~~~~~-------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  346 (394)
                      ++++.|++..-+.       ...++..+.+|||.|+++|+.++++.|++.|.+       +|.....| |+||.|+..|.
T Consensus       162 ~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-------in~~t~~g-talheaalcgk  233 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-------INYTTEDG-TALHEAALCGK  233 (854)
T ss_pred             HHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-------cccccccc-hhhhhHhhcCc
Confidence            7777777652111       123445677899999999999999999999988       88877776 89999999999


Q ss_pred             HHHHHHHHhcCCCCCCCcccCCCcHHHHHHhh
Q 040887          347 SQVVYALLRYGRSNPDLKNKQGMTAYKMALRE  378 (394)
Q Consensus       347 ~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~  378 (394)
                      .+++.+|++.| .+..++|.+|.|+|++....
T Consensus       234 ~evvr~ll~~g-in~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  234 AEVVRFLLEIG-INTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             chhhhHHHhhc-cccccccccchHHHHHHHhc
Confidence            99999999999 88999999999999987654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=2.3e-25  Score=213.35  Aligned_cols=177  Identities=20%  Similarity=0.216  Sum_probs=161.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCC-CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHc
Q 040887          192 NIEDKSPLSLAIEMGNTDVLEYILRSLP-SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN  270 (394)
Q Consensus       192 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~  270 (394)
                      +..+.++|+.|+..|+.++++.|++.+. .+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||.|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            3346789999999999999999998764 477888999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHH
Q 040887          271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV  350 (394)
Q Consensus       271 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  350 (394)
                      |+.++++.|++.+...   ....+.++||.|+..|+.++++.|+++|++       +|.+|.+|+||||+|+..|+.+++
T Consensus       602 g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-------in~~d~~G~TpLh~A~~~g~~~iv  671 (823)
T PLN03192        602 KHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN-------VDSEDHQGATALQVAMAEDHVDMV  671 (823)
T ss_pred             CCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCcHHHH
Confidence            9999999999765433   234678999999999999999999999999       999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCcccCC-CcHHHHHHhhh
Q 040887          351 YALLRYGRSNPDLKNKQG-MTAYKMALREY  379 (394)
Q Consensus       351 ~~Ll~~g~ad~~~~~~~g-~t~l~~a~~~~  379 (394)
                      ++|+++| +|++.+|..| .||++++....
T Consensus       672 ~~Ll~~G-Adv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        672 RLLIMNG-ADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHHcC-CCCCCCCCCCCCCHHHHHHHHH
Confidence            9999999 9999999999 99999886544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-25  Score=196.36  Aligned_cols=254  Identities=20%  Similarity=0.216  Sum_probs=208.9

Q ss_pred             CHHHHHHHHhccchhhhhccCC---------ccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCC
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIP---------KQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQG   76 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   76 (394)
                      ++-+..|++.||.+.+...+..         ....+.-.+.+|.+|.|.||.||.+|+.++++.|++..+ .++..+..|
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea-~ldl~d~kg   82 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA-LLDLCDTKG   82 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchh-hhhhhhccC
Confidence            6778999999999999882211         111133457789999999999999999999999999865 689999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCC
Q 040887           77 DTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSN  156 (394)
Q Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (394)
                      .+|||+|+..|+.+++++|+..+..+           +..+..|.||||.++..+                         
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~-----------na~~~e~~tplhlaaqhg-------------------------  126 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDIL-----------NAVNIENETPLHLAAQHG-------------------------  126 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCC-----------CcccccCcCccchhhhhc-------------------------
Confidence            99999999999999999999998443           566778999999998776                         


Q ss_pred             cccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC---------CCCCCCCC
Q 040887          157 PTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLP---------SGISWSSG  227 (394)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~---------~~~~~~~~  227 (394)
                                      +.+++.+|+..+.+.. .++..+.|++-.|++.|..++++.|++..-         .......+
T Consensus       127 ----------------h~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~  189 (854)
T KOG0507|consen  127 ----------------HLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPA  189 (854)
T ss_pred             ----------------chHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCC
Confidence                            3399999999999987 788889999999999999999999987521         23445667


Q ss_pred             CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc---
Q 040887          228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN---  304 (394)
Q Consensus       228 ~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---  304 (394)
                      .+|||.|+++|+.++++.|+..|++++.....| |+||.|+..|..++|++|++.+... ..++.+|.|+|.+-...   
T Consensus       190 ~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~-h~~n~~~qtaldil~d~~~~  267 (854)
T KOG0507|consen  190 IYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINT-HIKNQHGQTALDIIIDLQEN  267 (854)
T ss_pred             cCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhcccc-ccccccchHHHHHHHhcchh
Confidence            789999999999999999999999998877665 6899999999999999999887665 77888999988876554   


Q ss_pred             CCHHHHHHHHh
Q 040887          305 GHADMVKAIIE  315 (394)
Q Consensus       305 ~~~~~~~~Ll~  315 (394)
                      ...+++-.+..
T Consensus       268 ~~~ei~ga~~~  278 (854)
T KOG0507|consen  268 RRYEIAGAVKN  278 (854)
T ss_pred             hhhhhhhhhhc
Confidence            34455555544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-25  Score=190.00  Aligned_cols=83  Identities=34%  Similarity=0.399  Sum_probs=70.9

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccC
Q 040887          288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQ  367 (394)
Q Consensus       288 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~  367 (394)
                      ...+..|.|.||+|+.+|..++.++|++.|.+       ++.+|.+|+||||.|+.+|..++++.|+++| ++++.++..
T Consensus       192 d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-------~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g-a~~d~~t~~  263 (527)
T KOG0505|consen  192 DARHARGATALHVAAANGYTEVAALLLQAGYS-------VNIKDYDGWTPLHAAAHWGQEDACELLVEHG-ADMDAKTKM  263 (527)
T ss_pred             cccccccchHHHHHHhhhHHHHHHHHHHhccC-------cccccccCCCcccHHHHhhhHhHHHHHHHhh-cccchhhhc
Confidence            55556688888888888888888888888888       8888888899999888888888888888888 888888888


Q ss_pred             CCcHHHHHHhh
Q 040887          368 GMTAYKMALRE  378 (394)
Q Consensus       368 g~t~l~~a~~~  378 (394)
                      |.||+++|...
T Consensus       264 g~~p~dv~dee  274 (527)
T KOG0505|consen  264 GETPLDVADEE  274 (527)
T ss_pred             CCCCccchhhh
Confidence            88888888764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1e-25  Score=168.13  Aligned_cols=201  Identities=24%  Similarity=0.221  Sum_probs=178.1

Q ss_pred             HHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCc
Q 040887          173 LVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGY  251 (394)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~  251 (394)
                      ..+++.......++-....+.+|+++++.++-.++...+...+.++.. +..+..+++|+.+++...+.+.+..+.+.  
T Consensus        74 nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--  151 (296)
T KOG0502|consen   74 NSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--  151 (296)
T ss_pred             CcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--
Confidence            336666666666666666788899999999999999998888876654 55667899999999998888777776664  


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC
Q 040887          252 SALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD  331 (394)
Q Consensus       252 ~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  331 (394)
                      .+|..|..|.|||.+|+..|++.+|++|++.++++ ....+...++|.+|++.|..+||++|++.+.+       +|..|
T Consensus       152 ~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vd-------VNvyD  223 (296)
T KOG0502|consen  152 KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVD-------VNVYD  223 (296)
T ss_pred             cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-------cceec
Confidence            47889999999999999999999999999998887 77888889999999999999999999999999       99999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          332 EDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       332 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      -+|-|||-+|++.++.++++.||+.| ||++..+..|.+++++|++.||....
T Consensus       224 wNGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAValGyr~Vq  275 (296)
T KOG0502|consen  224 WNGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWIMDLAVALGYRIVQ  275 (296)
T ss_pred             cCCCceeeeeecCChHHHHHHHHhcC-CCcccccccCCcHHHHHHHhhhHHHH
Confidence            99999999999999999999999999 99999999999999999999997443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=5.8e-25  Score=209.69  Aligned_cols=124  Identities=23%  Similarity=0.199  Sum_probs=104.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc--------------CCCchHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 040887          257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT--------------DNGCNILHFAAKNGHADMVKAIIEIPGTNMT  322 (394)
Q Consensus       257 ~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  322 (394)
                      ...|.||||+|+..|+.++++.|++++++. +.++              ..|.||||+|+..|+.+++++|++.|++   
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad---  200 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD---  200 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc---
Confidence            457999999999999999999999987766 3321              3589999999999999999999999998   


Q ss_pred             chhhccccCCCCCcHHHHHHHcC---------CHHHHHHHHhcCCCCC-------CCcccCCCcHHHHHHhhhhcchhhh
Q 040887          323 MDEVVNKMDEDGNTPLHLAALHG---------HSQVVYALLRYGRSNP-------DLKNKQGMTAYKMALREYYMQTSIA  386 (394)
Q Consensus       323 ~~~~~~~~~~~g~t~L~~A~~~~---------~~~~~~~Ll~~g~ad~-------~~~~~~g~t~l~~a~~~~~~~~~~~  386 (394)
                          ++.+|..|+||||+|+..+         ...+.+++++.+ +..       ++.|.+|.|||++|++.|+.+....
T Consensus       201 ----in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll-~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~l  275 (743)
T TIGR00870       201 ----ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL-DKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRL  275 (743)
T ss_pred             ----hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hccCChHhhhhhcCCCCCCchhhhhhcCCccHHHH
Confidence                9999999999999999986         234566666665 443       6789999999999999998887654


Q ss_pred             HHH
Q 040887          387 EKQ  389 (394)
Q Consensus       387 ~~~  389 (394)
                      ..+
T Consensus       276 LL~  278 (743)
T TIGR00870       276 KLA  278 (743)
T ss_pred             HHH
Confidence            443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=3.3e-24  Score=205.52  Aligned_cols=175  Identities=15%  Similarity=0.143  Sum_probs=132.1

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcC
Q 040887           41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG  120 (394)
Q Consensus        41 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  120 (394)
                      ++.++||.||..|+.++++.|++.|. +++..|..|+||||+|+..|+.+++++|+++|++++                 
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~-d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin-----------------  585 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKL-DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH-----------------  585 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC-----------------
Confidence            45566777777777777777666644 566666667777777777777777777776666543                 


Q ss_pred             CcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHH
Q 040887          121 NTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLS  200 (394)
Q Consensus       121 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  200 (394)
                                                                                           .+|..|.||||
T Consensus       586 ---------------------------------------------------------------------~~d~~G~TpL~  596 (823)
T PLN03192        586 ---------------------------------------------------------------------IRDANGNTALW  596 (823)
T ss_pred             ---------------------------------------------------------------------CcCCCCCCHHH
Confidence                                                                                 45567888888


Q ss_pred             HHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887          201 LAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL  280 (394)
Q Consensus       201 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll  280 (394)
                      .|+..|+.+++++|++.+... ....+.++||.|+..|+.++++.|++.|++++.++..|.||||+|+..|+.+++++|+
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~-~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASIS-DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCccc-CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            888888888888888754433 2345678899999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCccccCCC-chHHHHHHHc
Q 040887          281 KEWRCPSLFVTDNG-CNILHFAAKN  304 (394)
Q Consensus       281 ~~~~~~~~~~~~~g-~t~L~~A~~~  304 (394)
                      +++++. +..+..| .||+.++...
T Consensus       676 ~~GAdv-~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        676 MNGADV-DKANTDDDFSPTELRELL  699 (823)
T ss_pred             HcCCCC-CCCCCCCCCCHHHHHHHH
Confidence            887766 6677766 8888776543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=5.3e-25  Score=176.67  Aligned_cols=162  Identities=28%  Similarity=0.354  Sum_probs=146.1

Q ss_pred             CCCCCCCCChHHHHHhcCCHHHHHHHHhcC-ccccccCCCCCcHHHHHHH-----cCCHHHHHHHHHhcCCCCccccCCC
Q 040887          221 GISWSSGKSPLQVATKKRNLGVCYLLEVNG-YSALKKNKETLYPIHLACK-----NGHANVMVELLKEWRCPSLFVTDNG  294 (394)
Q Consensus       221 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g-~~~~~~~~~g~~~l~~a~~-----~~~~~~v~~Ll~~~~~~~~~~~~~g  294 (394)
                      +..+.+|.|+||+++.+.++++++.|++.| ++++..+.-|+||+++++.     .....+|..|++.+... ..-...|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN-aKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN-AKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc-hhhhhhc
Confidence            677899999999999999999999999988 6899999999999999876     34567888888875544 3345679


Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHH
Q 040887          295 CNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKM  374 (394)
Q Consensus       295 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~  374 (394)
                      +|+|++|+.+|+.++++.||..|++       +|.+|.+|.|+|++|+.+|+.+|+++||....+|..++|.+|-|+|.+
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAd-------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGAD-------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI  413 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCC-------CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh
Confidence            9999999999999999999999999       999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcchhhhHHHh
Q 040887          375 ALREYYMQTSIAEKQE  390 (394)
Q Consensus       375 a~~~~~~~~~~~~~~~  390 (394)
                      |...|+.+........
T Consensus       414 Aleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  414 ALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHhcCchHHHHHHHHH
Confidence            9999998887665543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.92  E-value=2.4e-25  Score=201.73  Aligned_cols=286  Identities=22%  Similarity=0.204  Sum_probs=249.8

Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhh
Q 040887           38 VLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMEN  117 (394)
Q Consensus        38 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  117 (394)
                      ...+-.|+|-.||..|+.|+|+.|+..|+ ++..+|..|.+||.+|+..||..+|+.|+.+.++++          ...|
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~rga-niehrdkkgf~plImaatagh~tvV~~llk~ha~ve----------aQsd  821 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVVRGA-NIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE----------AQSD  821 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHHhcc-cccccccccchhhhhhcccCchHHHHHHHhhhhhhh----------hhcc
Confidence            44567899999999999999999999976 789999999999999999999999999999998875          3457


Q ss_pred             hcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCc
Q 040887          118 AMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKS  197 (394)
Q Consensus       118 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  197 (394)
                      +.+.|+|.+++.-+                  .                       .++++.|+..|.+-. .++...+|
T Consensus       822 rtkdt~lSlacsgg------------------r-----------------------~~vvelLl~~ganke-hrnvsDyt  859 (2131)
T KOG4369|consen  822 RTKDTMLSLACSGG------------------R-----------------------TRVVELLLNAGANKE-HRNVSDYT  859 (2131)
T ss_pred             cccCceEEEecCCC------------------c-----------------------chHHHHHHHhhcccc-ccchhhcC
Confidence            77888888877554                  2                       289999999998876 67788899


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCC---CCCCCCCCChHHHHHhcCCHHHHHHHHhcCcccccc-CCCCCcHHHHHHHcCCH
Q 040887          198 PLSLAIEMGNTDVLEYILRSLPS---GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKK-NKETLYPIHLACKNGHA  273 (394)
Q Consensus       198 ~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~-~~~g~~~l~~a~~~~~~  273 (394)
                      ||.+|...|..++++.|+..+..   ..-...|..||+.|..+|+....+.|++.|.|+|.. ..+-+|+|.+|+-.|+.
T Consensus       860 Plsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~  939 (2131)
T KOG4369|consen  860 PLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP  939 (2131)
T ss_pred             chhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc
Confidence            99999999999999999998744   344477899999999999999999999999999875 34567999999999999


Q ss_pred             HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC--CCCCcHHHHHHHcCCHHHHH
Q 040887          274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD--EDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~  351 (394)
                      +++..||...... ..+-+.|.|||+-++..|..|+-++||..|++       +|..-  ..-.|+|-+++..|+...+.
T Consensus       940 evv~lLLa~~anv-ehRaktgltplme~AsgGyvdvg~~li~~gad-------~nasPvp~T~dtalti~a~kGh~kfv~ 1011 (2131)
T KOG4369|consen  940 EVVFLLLAAQANV-EHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD-------TNASPVPNTWDTALTIPANKGHTKFVP 1011 (2131)
T ss_pred             hHHHHHHHHhhhh-hhhcccCCcccchhhcCCccccchhhhhcccc-------cccCCCCCcCCccceeecCCCchhhhH
Confidence            9999999876555 78889999999999999999999999999999       65532  23359999999999999999


Q ss_pred             HHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887          352 ALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI  385 (394)
Q Consensus       352 ~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~  385 (394)
                      .|+... |-+.++|++|.|+|-+|+..|+....-
T Consensus      1012 ~lln~~-atv~v~NkkG~T~Lwla~~Gg~lss~~ 1044 (2131)
T KOG4369|consen 1012 KLLNGD-ATVRVPNKKGCTVLWLASAGGALSSCP 1044 (2131)
T ss_pred             HhhCCc-cceecccCCCCcccchhccCCccccch
Confidence            999987 999999999999999999999876643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=5.7e-23  Score=158.04  Aligned_cols=137  Identities=14%  Similarity=0.125  Sum_probs=119.2

Q ss_pred             CCCCChHHHHHhcCCH----HHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHH---HHHHHHhcCCCCcccc-CCCch
Q 040887          225 SSGKSPLQVATKKRNL----GVCYLLEVNGYSALKKNKETLYPIHLACKNGHANV---MVELLKEWRCPSLFVT-DNGCN  296 (394)
Q Consensus       225 ~~~~~~l~~a~~~~~~----~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~---v~~Ll~~~~~~~~~~~-~~g~t  296 (394)
                      ..+.+++|.|++.|+.    +++++|.+.|.+++.++..|+||||+|+..|+.+.   +++|++.+... +.++ ..|.|
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~T   96 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNT   96 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCc
Confidence            4566777888877776    45557778888899999999999999999988654   78999887665 7777 58999


Q ss_pred             HHHHHHHcCCHHHHHHHHh-CCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCc
Q 040887          297 ILHFAAKNGHADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMT  370 (394)
Q Consensus       297 ~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t  370 (394)
                      |||+|+..++.+++++|++ .|++       ++.+|..|+||||+|+..++.+++++|+++| ++++.++..|.+
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad-------~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~  163 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVN-------LGAINYQHETAYHIAYKMRDRRMMEILRANG-AVCDDPLSIGLS  163 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCC-------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcccCCcc
Confidence            9999999999999999995 7888       8999999999999999999999999999999 999999988764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.8e-23  Score=167.96  Aligned_cols=183  Identities=18%  Similarity=0.271  Sum_probs=142.8

Q ss_pred             CHHHHHHHHHhCC--------CCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHH
Q 040887           54 HGEITAKIAQYYP--------FLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALH  125 (394)
Q Consensus        54 ~~~~v~~Ll~~~~--------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~  125 (394)
                      +++.|...|....        ..+|..|.+|+|+||||+.++|+++|+.||+.|..-          ++.+|+.|.||++
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~----------VD~qNrAGYtpiM  307 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCD----------VDQQNRAGYTPVM  307 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCccc----------ccccccccccHHH
Confidence            5666665544321        137888999999999999999999999999998642          3566777888887


Q ss_pred             HHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHc
Q 040887          126 EALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEM  205 (394)
Q Consensus       126 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~  205 (394)
                      .++...                                                          .+     +       -
T Consensus       308 LaALA~----------------------------------------------------------lk-----~-------~  317 (452)
T KOG0514|consen  308 LAALAK----------------------------------------------------------LK-----Q-------P  317 (452)
T ss_pred             HHHHHh----------------------------------------------------------hc-----c-------h
Confidence            776543                                                          00     0       1


Q ss_pred             CCHHHHHHHHHhCCCCCCC-CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 040887          206 GNTDVLEYILRSLPSGISW-SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR  284 (394)
Q Consensus       206 ~~~~~~~~ll~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~  284 (394)
                      .+.++|..|..-++.+.+- ..|.|+|++|+.+|..++++.|+..|+|+|.+|.+|-|+|++||++|+.++++.||....
T Consensus       318 ~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~  397 (452)
T KOG0514|consen  318 ADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS  397 (452)
T ss_pred             hhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCc
Confidence            1234555555555444332 558888888888888888889999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCchHHHHHHHcCCHHHHHHHHhC
Q 040887          285 CPSLFVTDNGCNILHFAAKNGHADMVKAIIEI  316 (394)
Q Consensus       285 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  316 (394)
                      +++...|.+|.|+|.+|...|+.||.-+|..+
T Consensus       398 cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  398 CDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             ccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            99889999999999999999999998888754

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=155.66  Aligned_cols=126  Identities=15%  Similarity=0.107  Sum_probs=75.3

Q ss_pred             CCCCCChHHHHHhcCCHHHHHHHHh------cCccccccCCCCCcHHHHHHHcCC----HHHHHHHHHhcCCCCccccC-
Q 040887          224 WSSGKSPLQVATKKRNLGVCYLLEV------NGYSALKKNKETLYPIHLACKNGH----ANVMVELLKEWRCPSLFVTD-  292 (394)
Q Consensus       224 ~~~~~~~l~~a~~~~~~~~~~~L~~------~g~~~~~~~~~g~~~l~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~-  292 (394)
                      +..|.||||.|++.|+.++++.|+.      .|++++.++..|.||||+|+..|+    .+++++|+..+++. +.++. 
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~   96 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEML   96 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcC
Confidence            3456666666666666666655532      245556666666666666666665    35556666554443 44443 


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHh-CCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          293 NGCNILHFAAKNGHADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       293 ~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      .|+||||+|+..++.+++++|++ .|++       ++.+|..|+||||+|+..++.+++++|++++
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-------~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGID-------LHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCC-------CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            56666666666666666666665 3555       5666666666666666666666666666655

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=1.4e-21  Score=140.60  Aligned_cols=144  Identities=29%  Similarity=0.315  Sum_probs=123.6

Q ss_pred             HHHHHhcCCH-HHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHH
Q 040887          231 LQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM  309 (394)
Q Consensus       231 l~~a~~~~~~-~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  309 (394)
                      +..|+..+.. ++..+|.....-++.+|.+|.||||.|+.+|+.+++..|+..++.. +.+...|+||||-||..++.++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchhH
Confidence            3456666665 4444455555568999999999999999999999999999998877 8899999999999999999999


Q ss_pred             HHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCH-HHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcc
Q 040887          310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS-QVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ  382 (394)
Q Consensus       310 ~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~  382 (394)
                      +..|+.+|++       +|+......||||+|+...+. ..+.+|+...+.++..++..+.||+++|.+-+...
T Consensus       146 a~~LLqhgaD-------VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~  212 (228)
T KOG0512|consen  146 AGRLLQHGAD-------VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSH  212 (228)
T ss_pred             HHHHHhccCc-------ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhH
Confidence            9999999999       999999999999999987765 56777877777999999999999999998876443

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.7e-21  Score=150.71  Aligned_cols=130  Identities=18%  Similarity=0.127  Sum_probs=98.8

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHh-------CCCCCCCCCCCChHHHHHhcCC----HHHHHHHHhcCccccccCC
Q 040887          190 CKNIEDKSPLSLAIEMGNTDVLEYILRS-------LPSGISWSSGKSPLQVATKKRN----LGVCYLLEVNGYSALKKNK  258 (394)
Q Consensus       190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~-------~~~~~~~~~~~~~l~~a~~~~~----~~~~~~L~~~g~~~~~~~~  258 (394)
                      .++..|.||||+|+..|+.++++.|+..       ...+..+..|.||||+|+..++    .+++++|+..|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            4566788888888888888888877542       1235566778888888888877    3777888888888887774


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 040887          259 -ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGT  319 (394)
Q Consensus       259 -~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  319 (394)
                       .|.||||+|+..++.+++++|+...+..++..+..|.||||+|+..++.+++++|++.++.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence             7888888888888888888888753344477788888888888888888888888877654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=2e-21  Score=149.53  Aligned_cols=129  Identities=21%  Similarity=0.234  Sum_probs=110.2

Q ss_pred             cCccccccCCCCCcHHHHHHHcCCH----HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHH---HHHHHhCCCCCC
Q 040887          249 NGYSALKKNKETLYPIHLACKNGHA----NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM---VKAIIEIPGTNM  321 (394)
Q Consensus       249 ~g~~~~~~~~~g~~~l~~a~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---~~~Ll~~~~~~~  321 (394)
                      +|++++..+..+.++||.||+.|+.    +++++|++.+.. ++.+|..|+||||+|+..|+.+.   +++|++.|++  
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad--   85 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD--   85 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC--
Confidence            4566777788889999999999998    455556665544 47789999999999999988654   8999999999  


Q ss_pred             cchhhccccC-CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCcccCCCcHHHHHHhhhhcchhhh
Q 040887          322 TMDEVVNKMD-EDGNTPLHLAALHGHSQVVYALLR-YGRSNPDLKNKQGMTAYKMALREYYMQTSIA  386 (394)
Q Consensus       322 ~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~-~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~  386 (394)
                           ++.++ ..|+||||+|+..++.+++++|++ .| ++++.+|..|.||||+|...+..+....
T Consensus        86 -----in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~tpL~~A~~~~~~~iv~~  146 (166)
T PHA02743         86 -----INARELGTGNTLLHIAASTKNYELAEWLCRQLG-VNLGAINYQHETAYHIAYKMRDRRMMEI  146 (166)
T ss_pred             -----CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC-CCccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                 99998 589999999999999999999996 67 9999999999999999999987665433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=3.8e-21  Score=146.89  Aligned_cols=100  Identities=14%  Similarity=0.069  Sum_probs=83.7

Q ss_pred             cccCCCCCcHHHHHHHcCCHH---HHHHHHHhcCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHhC-CCCCCcchhhcc
Q 040887          254 LKKNKETLYPIHLACKNGHAN---VMVELLKEWRCPSLFVT-DNGCNILHFAAKNGHADMVKAIIEI-PGTNMTMDEVVN  328 (394)
Q Consensus       254 ~~~~~~g~~~l~~a~~~~~~~---~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~  328 (394)
                      ..++..|.||||+|+..|..+   ++++|++.+.+. +.++ ..|.||||+|+..++.+++++|++. |++       ++
T Consensus        49 ~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-------~n  120 (154)
T PHA02736         49 LEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-------ME  120 (154)
T ss_pred             HHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-------Cc
Confidence            345778899999999888764   577888887655 6676 4899999999999999999999974 777       88


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 040887          329 KMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD  362 (394)
Q Consensus       329 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~  362 (394)
                      .+|..|.||||+|+..|+.+++++|+++| ++.+
T Consensus       121 ~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g-a~~~  153 (154)
T PHA02736        121 ILNYAFKTPYYVACERHDAKMMNILRAKG-AQCK  153 (154)
T ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence            89999999999999999999999999988 7764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=6.3e-21  Score=137.23  Aligned_cols=111  Identities=23%  Similarity=0.239  Sum_probs=105.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHH
Q 040887          263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       263 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      .+.+|+..+....|+.|++..+..++.+|.+|+||||.|+.+|+.+|++.|+..|++       .+++...|+||||-||
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-------~~a~T~~GWTPLhSAc  138 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-------KEAKTNEGWTPLHSAC  138 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-------cccccccCccchhhhh
Confidence            467899999999999999999999999999999999999999999999999999999       8999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhc
Q 040887          343 LHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYM  381 (394)
Q Consensus       343 ~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~  381 (394)
                      +..+.+++.+||++| +|+++.....+||||+|+...+.
T Consensus       139 kWnN~~va~~LLqhg-aDVnA~t~g~ltpLhlaa~~rn~  176 (228)
T KOG0512|consen  139 KWNNFEVAGRLLQHG-ADVNAQTKGLLTPLHLAAGNRNS  176 (228)
T ss_pred             cccchhHHHHHHhcc-CcccccccccchhhHHhhcccch
Confidence            999999999999999 99999999999999999877543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=4.6e-20  Score=152.53  Aligned_cols=152  Identities=16%  Similarity=0.065  Sum_probs=120.2

Q ss_pred             ccCCCCCc-HHHHHHHcCCHHHHHHHHHhCCCCC-C----CCCCCChHHHHHhcCCHHHHHHHHhcCcccccc-CCCCCc
Q 040887          190 CKNIEDKS-PLSLAIEMGNTDVLEYILRSLPSGI-S----WSSGKSPLQVATKKRNLGVCYLLEVNGYSALKK-NKETLY  262 (394)
Q Consensus       190 ~~~~~~~~-~l~~a~~~~~~~~~~~ll~~~~~~~-~----~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~-~~~g~~  262 (394)
                      .+|..+.+ +|+.|+..++.+++++|++.|.... .    +..|.||||+|+..++.+++++|++.|++++.+ +..|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            34555555 5666777788999999998876532 2    347899999999999999999999999999875 457899


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHH
Q 040887          263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       263 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      |||.|+..++.+++++|+..+++. +.++..|.||||+|+..++.+++..+...+            .+..+.+|++++ 
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-  172 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDNE------------ISNFYKHPKKIL-  172 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCCc------------ccccccChhhhh-
Confidence            999999999999999999887666 778888999999999888888876665322            355667888875 


Q ss_pred             HcCCHHHHHHHHhcC
Q 040887          343 LHGHSQVVYALLRYG  357 (394)
Q Consensus       343 ~~~~~~~~~~Ll~~g  357 (394)
                        ++.+++++|+.++
T Consensus       173 --~n~ei~~~Lish~  185 (300)
T PHA02884        173 --INFDILKILVSHF  185 (300)
T ss_pred             --ccHHHHHHHHHHH
Confidence              4688999999888

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=5.3e-20  Score=152.16  Aligned_cols=139  Identities=11%  Similarity=0.026  Sum_probs=117.4

Q ss_pred             CCCCCCC-hHHHHHhcCCHHHHHHHHhcCccccccC----CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccc-cCCCch
Q 040887          223 SWSSGKS-PLQVATKKRNLGVCYLLEVNGYSALKKN----KETLYPIHLACKNGHANVMVELLKEWRCPSLFV-TDNGCN  296 (394)
Q Consensus       223 ~~~~~~~-~l~~a~~~~~~~~~~~L~~~g~~~~~~~----~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~-~~~g~t  296 (394)
                      .+..+.+ +|+.|+..++.+++++|++.|++++.++    ..|.||||+|+..++.+++++|++++++. +.. +..|.|
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~T  106 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKIT  106 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCC
Confidence            3445555 5666777789999999999999999874    58999999999999999999999988776 664 567999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHH
Q 040887          297 ILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA  375 (394)
Q Consensus       297 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a  375 (394)
                      |||+|+..++.+++++|++.|++       ++.+|..|.||||+|+..++..++..+.  | ..   .+..+.+|++++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAd-------in~kd~~G~TpL~~A~~~~~~~~~~~~~--~-~~---~~~~~~~~~~~~  172 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGAD-------INIQTNDMVTPIELALMICNNFLAFMIC--D-NE---ISNFYKHPKKIL  172 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHhCChhHHHHhc--C-Cc---ccccccChhhhh
Confidence            99999999999999999999999       9999999999999999999888875554  3 22   466677888765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=7e-21  Score=148.61  Aligned_cols=124  Identities=30%  Similarity=0.420  Sum_probs=93.1

Q ss_pred             HHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 040887          244 YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTM  323 (394)
Q Consensus       244 ~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  323 (394)
                      -+|-+..-|.+.-|..|.+|||+||+.|+..+++.|+..++.. +..+....||||+|+.+|+.++|..|++..++    
T Consensus        18 lwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~kad----   92 (448)
T KOG0195|consen   18 LWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD----   92 (448)
T ss_pred             EEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHhcc----
Confidence            3444445566667777777888888888877777777776665 66777777788888888888888888877777    


Q ss_pred             hhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHH
Q 040887          324 DEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL  376 (394)
Q Consensus       324 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~  376 (394)
                         +|+.|..|+|||||||..|.-.+++-|+..| |.+++-|+.|.||++.|.
T Consensus        93 ---vnavnehgntplhyacfwgydqiaedli~~g-a~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   93 ---VNAVNEHGNTPLHYACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             ---cchhhccCCCchhhhhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhhc
Confidence               7777778888888888887777777788777 777777888888777664

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=1.6e-19  Score=138.01  Aligned_cols=130  Identities=14%  Similarity=0.022  Sum_probs=107.5

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC------CCCCCCCCChHHHHHhcCCH---HHHHHHHhcCccccccC-CC
Q 040887          190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPS------GISWSSGKSPLQVATKKRNL---GVCYLLEVNGYSALKKN-KE  259 (394)
Q Consensus       190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~------~~~~~~~~~~l~~a~~~~~~---~~~~~L~~~g~~~~~~~-~~  259 (394)
                      .++..|.||||+|+..|+...+..+......      ...+..|.||||+|+..+..   +++++|+..|++++.++ ..
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~   91 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVF   91 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCC
Confidence            4677899999999999984222111111111      23467899999999999986   46889999999999998 48


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 040887          260 TLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGT  319 (394)
Q Consensus       260 g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  319 (394)
                      |.||||+|+..|+.+++++|+......++..+..|.||||+|+..|+.+++++|++.|++
T Consensus        92 g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         92 GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999864555588999999999999999999999999999987

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=2.1e-19  Score=123.63  Aligned_cols=89  Identities=35%  Similarity=0.583  Sum_probs=79.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887          264 IHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL  343 (394)
Q Consensus       264 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  343 (394)
                      ||+|++.|+.+++++|++.+... +.    |+||||+|+..|+.+++++|++.|++       ++.+|..|+||||+|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~   68 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGAD-------INSQDKNGNTALHYAAE   68 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTC-------TT-BSTTSSBHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhccc-------ccccCCCCCCHHHHHHH
Confidence            78999999999999999976444 32    89999999999999999999999999       99999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCcc
Q 040887          344 HGHSQVVYALLRYGRSNPDLKN  365 (394)
Q Consensus       344 ~~~~~~~~~Ll~~g~ad~~~~~  365 (394)
                      +|+.+++++|+++| ++++.+|
T Consensus        69 ~~~~~~~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   69 NGNLEIVKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             TTHHHHHHHHHHTT-T-TTSS-
T ss_pred             cCCHHHHHHHHHcC-CCCCCcC
Confidence            99999999999998 9998876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=4.2e-18  Score=151.77  Aligned_cols=215  Identities=19%  Similarity=0.186  Sum_probs=149.6

Q ss_pred             HHHHHHHHhccchhhhhccCCc-----cchhhHhhhcCCCCchHHHHHHhc---CCHHHHHHHHHhCCCCcccc----cC
Q 040887            7 PAYFEAAIRGNIDDFLFSDIPK-----QDLHHIFEKVLTDGSSLLHVAAKS---GHGEITAKIAQYYPFLINKT----NN   74 (394)
Q Consensus         7 ~~l~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~----~~   74 (394)
                      .+++.|...++.+.........     .....-++.+..-|.|+||.|..+   ++.++++.|++..+..+|..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            5677777777777776622111     001122455677899999999873   45699999999887655543    47


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhccc
Q 040887           75 QGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFL  154 (394)
Q Consensus        75 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (394)
                      .|.||||.|+.+.+.++|++|++.|||+++......  +...|..+                                  
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~F--F~~~dqk~----------------------------------  226 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAF--FCPDDQKA----------------------------------  226 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccc--cCcccccc----------------------------------
Confidence            799999999999999999999999999864321100  00000000                                  


Q ss_pred             CCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHH
Q 040887          155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVA  234 (394)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a  234 (394)
                                                      .....++.|                           .-..|+.||.+|
T Consensus       227 --------------------------------~rk~T~Y~G---------------------------~~YfGEyPLSfA  247 (782)
T KOG3676|consen  227 --------------------------------SRKSTNYTG---------------------------YFYFGEYPLSFA  247 (782)
T ss_pred             --------------------------------cccccCCcc---------------------------eeeeccCchHHH
Confidence                                            000122222                           115577778877


Q ss_pred             HhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCC-CCccccCCCchHHHHHHHcCCHHHHHHH
Q 040887          235 TKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC-PSLFVTDNGCNILHFAAKNGHADMVKAI  313 (394)
Q Consensus       235 ~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~L  313 (394)
                      +-.++.+++++|++.|+|++.+|..|+|.||..+..-..++...+++.++. ....++..|.|||.+|++.|..++++.+
T Consensus       248 AC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  248 ACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             HHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHH
Confidence            777777888888888888888888888888888888778888888887666 1256777888888888888888888888


Q ss_pred             HhC
Q 040887          314 IEI  316 (394)
Q Consensus       314 l~~  316 (394)
                      ++.
T Consensus       328 le~  330 (782)
T KOG3676|consen  328 LER  330 (782)
T ss_pred             HHh
Confidence            877

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=4.8e-18  Score=144.21  Aligned_cols=174  Identities=22%  Similarity=0.256  Sum_probs=106.5

Q ss_pred             HHHcCCHHHHHHHHHhC-CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887          202 AIEMGNTDVLEYILRSL-PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL  280 (394)
Q Consensus       202 a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll  280 (394)
                      |+..+..+-++.|+..+ ..+..+..|.|+||-+|.-.+.+++++|++.|++++..+..|+||+|.|+..|+..++.+|+
T Consensus        47 A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li  126 (527)
T KOG0505|consen   47 ACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLI  126 (527)
T ss_pred             ccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHH
Confidence            44444444444444432 22444445555555555555555555555555555555555555555555555555555555


Q ss_pred             HhcCCCCccccCCCchHHHHHH----------------------HcC----C-HHHHHHHHhCCCCCCcchhhccccCCC
Q 040887          281 KEWRCPSLFVTDNGCNILHFAA----------------------KNG----H-ADMVKAIIEIPGTNMTMDEVVNKMDED  333 (394)
Q Consensus       281 ~~~~~~~~~~~~~g~t~L~~A~----------------------~~~----~-~~~~~~Ll~~~~~~~~~~~~~~~~~~~  333 (394)
                      ..++.. ...+.+|..|+..+.                      +.-    - .++-.|+ ..|..       .++.+..
T Consensus       127 ~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l-~~G~~-------~d~~~~r  197 (527)
T KOG0505|consen  127 QHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWL-NAGAE-------LDARHAR  197 (527)
T ss_pred             Hhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHH-hcccc-------ccccccc
Confidence            544443 223333332222111                      000    0 1233334 47776       6777778


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887          334 GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI  385 (394)
Q Consensus       334 g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~  385 (394)
                      |-|+||.|+-.|..+++++|++.| .+++++|.+||||||.|+..|..+.--
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~ag-~~~~~~D~dgWtPlHAAA~Wg~~~~~e  248 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQAG-YSVNIKDYDGWTPLHAAAHWGQEDACE  248 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHHhc-cCcccccccCCCcccHHHHhhhHhHHH
Confidence            999999999999999999999999 999999999999999999998876643

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=8e-18  Score=131.66  Aligned_cols=114  Identities=27%  Similarity=0.366  Sum_probs=106.7

Q ss_pred             CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHH
Q 040887          221 GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHF  300 (394)
Q Consensus       221 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  300 (394)
                      +.-+..|.+|||+|++.|+..+++.|+..|+.++..+....||||+|+.+|+.++|+.|++..++. +..+..|+|||||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadv-navnehgntplhy  106 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHY  106 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhccc-chhhccCCCchhh
Confidence            556678999999999999999999999999999999999999999999999999999999987776 9999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHH
Q 040887          301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       301 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      ||-.|.-.+.+-|+..|+.       ++..|++|.|||..|-
T Consensus       107 acfwgydqiaedli~~ga~-------v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  107 ACFWGYDQIAEDLISCGAA-------VNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhcHHHHHHHHHhccce-------eeecccCCCCchhhhc
Confidence            9999999999999999999       9999999999998874

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=9.7e-17  Score=118.75  Aligned_cols=122  Identities=40%  Similarity=0.569  Sum_probs=91.8

Q ss_pred             CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887          225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN  304 (394)
Q Consensus       225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  304 (394)
                      ..|.|||++|+..++.++++.|+..+.+.+..+..|.+|+|.|+..+..+++++|++.+... +..+..|.||+|+|+..
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARN   83 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHc
Confidence            45667777777777777777777777766677777778888888888888888888776533 55667777888888888


Q ss_pred             CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887          305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL  354 (394)
Q Consensus       305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  354 (394)
                      ++.+++++|++.+..       ++..+..|.||+++|...++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGAD-------VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCC-------CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888888888887766       6777777888888888888888877764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=8.1e-17  Score=119.16  Aligned_cols=119  Identities=38%  Similarity=0.562  Sum_probs=109.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC
Q 040887          256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN  335 (394)
Q Consensus       256 ~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~  335 (394)
                      ++..|.||||.|+..++.+++++|++.+... +..+..|.||+|+|+..++.+++++|++.|+.       ++..+..|.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-------~~~~~~~~~   74 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-------VNARDKDGN   74 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------ccccCCCCC
Confidence            4577999999999999999999999987766 77888999999999999999999999999987       888899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcch
Q 040887          336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT  383 (394)
Q Consensus       336 t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~  383 (394)
                      ||+|+|+..++.+++++|++.| .+.+..+..|.||+++|...+..+.
T Consensus        75 ~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~  121 (126)
T cd00204          75 TPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEV  121 (126)
T ss_pred             CHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCHHH
Confidence            9999999999999999999999 8999999999999999998865543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=3.3e-17  Score=112.62  Aligned_cols=89  Identities=28%  Similarity=0.352  Sum_probs=76.1

Q ss_pred             HHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHH
Q 040887          231 LQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMV  310 (394)
Q Consensus       231 l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  310 (394)
                      ||.|++.++.+++++|++.+.+++.    |.||||+|+..|+.+++++|++.+.+. +.++..|+||||+|+.+|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHHH
Confidence            6888999999999999888877765    888999999999999999999987765 88889999999999999999999


Q ss_pred             HHHHhCCCCCCcchhhccccC
Q 040887          311 KAIIEIPGTNMTMDEVVNKMD  331 (394)
Q Consensus       311 ~~Ll~~~~~~~~~~~~~~~~~  331 (394)
                      ++|+++|++       ++.+|
T Consensus        76 ~~Ll~~g~~-------~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGAD-------VNIRN   89 (89)
T ss_dssp             HHHHHTTT--------TTSS-
T ss_pred             HHHHHcCCC-------CCCcC
Confidence            999999988       77654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=6.7e-17  Score=144.21  Aligned_cols=182  Identities=19%  Similarity=0.239  Sum_probs=149.0

Q ss_pred             cCCCCCcHHHHHHHc---CCHHHHHHHHHhCCC------CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccC----
Q 040887          191 KNIEDKSPLSLAIEM---GNTDVLEYILRSLPS------GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN----  257 (394)
Q Consensus       191 ~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~------~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~----  257 (394)
                      +...|.|.||.|..+   ++.++++.|++..+.      ......|.||||+|+.+.+.+++.+|++.|+|++.+.    
T Consensus       139 RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~F  218 (782)
T KOG3676|consen  139 RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAF  218 (782)
T ss_pred             ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccc
Confidence            455789999999873   345888888886543      2333779999999999999999999999999988642    


Q ss_pred             -------------------CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCC
Q 040887          258 -------------------KETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPG  318 (394)
Q Consensus       258 -------------------~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  318 (394)
                                         ..|+.||-.|++.++.+++++|+++++++ +.+|..|+|.||..+..-..++.++++++|+
T Consensus       219 F~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga  297 (782)
T KOG3676|consen  219 FCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGA  297 (782)
T ss_pred             cCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence                               24678999999999999999999977766 9999999999999999999999999999999


Q ss_pred             CCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc-C------------CCCCCCccc--CCCcHHHHHHhh
Q 040887          319 TNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY-G------------RSNPDLKNK--QGMTAYKMALRE  378 (394)
Q Consensus       319 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g------------~ad~~~~~~--~g~t~l~~a~~~  378 (394)
                      .     .....+|.+|-|||.+|++-|+.++.+.+++. +            ..+++..|.  +-.++|.+.+..
T Consensus       298 ~-----~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  298 N-----ALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             C-----ccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            8     22567899999999999999999999999998 2            123334444  344666666654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.70  E-value=5.7e-17  Score=103.87  Aligned_cols=92  Identities=22%  Similarity=0.199  Sum_probs=81.9

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      |..+.|++++|+++.|+.....+.++.    . ...|++|||+|+-+|+.+++++|+..|+ +++.+|..|-|||-.|+.
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn----~-~~ggR~plhyAAD~GQl~ilefli~iGA-~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVN----E-IYGGRTPLHYAADYGQLSILEFLISIGA-NIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHH----H-HhCCcccchHhhhcchHHHHHHHHHhcc-ccCCccccCCcHHHHHHH
Confidence            577899999999999999665556653    2 2379999999999999999999999977 799999999999999999


Q ss_pred             cCcHHHHHHHHhhccCCC
Q 040887           86 AGKLNTATALVDFAKHIP  103 (394)
Q Consensus        86 ~~~~~~v~~Ll~~ga~~~  103 (394)
                      .|+.++|++||+.||+-.
T Consensus        77 EGH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRT   94 (117)
T ss_pred             HhhHHHHHHHHHcCcccc
Confidence            999999999999999853

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.68  E-value=2.3e-16  Score=101.15  Aligned_cols=105  Identities=24%  Similarity=0.334  Sum_probs=93.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHH
Q 040887          263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       263 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      .+.+++.+|..+-|+..+..+-.. + ....|++|||+|+-+|+.+++++|+..|++       ++.+|+.|-|||.-|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nV-n-~~~ggR~plhyAAD~GQl~ilefli~iGA~-------i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNV-N-EIYGGRTPLHYAADYGQLSILEFLISIGAN-------IQDKDKYGITPLLSAV   75 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccH-H-HHhCCcccchHhhhcchHHHHHHHHHhccc-------cCCccccCCcHHHHHH
Confidence            467889999999999888876333 3 233799999999999999999999999999       9999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHh
Q 040887          343 LHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR  377 (394)
Q Consensus       343 ~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~  377 (394)
                      ..|+.++|++||+.| ||-.++..+|.+.++.+-.
T Consensus        76 wEGH~~cVklLL~~G-Adrt~~~PdG~~~~eate~  109 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNG-ADRTIHAPDGTALIEATEE  109 (117)
T ss_pred             HHhhHHHHHHHHHcC-cccceeCCCchhHHhhccH
Confidence            999999999999999 9999999999988876643

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.63  E-value=2.1e-14  Score=118.52  Aligned_cols=137  Identities=29%  Similarity=0.343  Sum_probs=125.1

Q ss_pred             HHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC-----HHHHHHHHHhcC--CC
Q 040887          214 ILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH-----ANVMVELLKEWR--CP  286 (394)
Q Consensus       214 ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~-----~~~v~~Ll~~~~--~~  286 (394)
                      ..........+..+.++++.++..+...++.++...|++++.++..|.||||+|+..++     .++++.|++.+.  ..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~  139 (235)
T COG0666          60 LIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV  139 (235)
T ss_pred             hccccccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC
Confidence            33333445555668999999999999999999999999999999999999999999999     999999999999  67


Q ss_pred             CccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       287 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      ....+..|+||||+|+..|+.++++.|++.|++       ++.++..|.|+++.|+..++.++++.+++.+
T Consensus       140 ~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~-------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         140 NNLRDEDGNTPLHWAALNGDADIVELLLEAGAD-------PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccccCCCCCchhHHHHHcCchHHHHHHHhcCCC-------CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            687899999999999999999999999999999       8999999999999999999999999999974

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.63  E-value=4e-16  Score=95.55  Aligned_cols=55  Identities=47%  Similarity=0.683  Sum_probs=31.8

Q ss_pred             HHhCC-CCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHH
Q 040887          313 IIEIP-GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA  375 (394)
Q Consensus       313 Ll~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a  375 (394)
                      |++.| .+       ++.+|..|+||||+|+.+|+.+++++|++.| +|++++|..|+||+|+|
T Consensus         1 LL~~~~~~-------~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPAD-------VNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T---------TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCC-------CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            45666 44       8999999999999999999999999999888 99999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.60  E-value=2.5e-15  Score=91.79  Aligned_cols=54  Identities=37%  Similarity=0.507  Sum_probs=45.6

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHH
Q 040887           42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV   96 (394)
Q Consensus        42 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   96 (394)
                      |.||||+||+.|+.+++++|++.+ .+++.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999995 589999999999999999999999999996

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.57  E-value=7.1e-15  Score=89.75  Aligned_cols=54  Identities=44%  Similarity=0.703  Sum_probs=44.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887          294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL  354 (394)
Q Consensus       294 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  354 (394)
                      |+||||+|++.|+.+++++|++.|.+       ++.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999988       8999999999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=3.7e-14  Score=116.98  Aligned_cols=128  Identities=30%  Similarity=0.395  Sum_probs=115.5

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCC-----HHHHHHHHhCCC--CCCcchh
Q 040887          253 ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGH-----ADMVKAIIEIPG--TNMTMDE  325 (394)
Q Consensus       253 ~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~--~~~~~~~  325 (394)
                      ....+..+.++++.++..+..+++.+++..+.+. +.++..|.||||+|+..++     .++++.|++.|+  +.     
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~-----  139 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV-----  139 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC-----
Confidence            3445566889999999999999999999998888 9999999999999999999     999999999999  32     


Q ss_pred             hccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       326 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                       .+.+|..|+||||+|+..|+.+++.+|++.| ++++.++..|.|+++.|...+..+......
T Consensus       140 -~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~  200 (235)
T COG0666         140 -NNLRDEDGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGRIELVKLLL  200 (235)
T ss_pred             -ccccCCCCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccchHHHHHHHH
Confidence             7778999999999999999999999999999 999999999999999999998876654433

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=1e-14  Score=89.31  Aligned_cols=56  Identities=34%  Similarity=0.507  Sum_probs=32.6

Q ss_pred             HHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHH
Q 040887          279 LLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA  341 (394)
Q Consensus       279 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A  341 (394)
                      |++.++.+++..|..|+||||+|+.+|+.+++++|++.|++       ++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-------~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-------PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-------CCCCcCCCCCHHHhC
Confidence            45666667788999999999999999999999999999998       999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.52  E-value=8.7e-14  Score=130.16  Aligned_cols=105  Identities=29%  Similarity=0.340  Sum_probs=73.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHH
Q 040887          263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       263 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      .|+.|+..|+.+.++.|++.+.+. +.+|..|.||||+|+..|+.+++++|++.|++       ++.+|..|+||||+|+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-------vn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-------PTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHH
Confidence            466677777777777777665544 66677777777777777777777777777776       6777777777777777


Q ss_pred             HcCCHHHHHHHHhc-------CCCCCCCcccCCCcHHHHHH
Q 040887          343 LHGHSQVVYALLRY-------GRSNPDLKNKQGMTAYKMAL  376 (394)
Q Consensus       343 ~~~~~~~~~~Ll~~-------g~ad~~~~~~~g~t~l~~a~  376 (394)
                      ..|+.+++++|+++       | ++++..+..|.+|+..+.
T Consensus       157 ~~g~~~iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        157 ENGFREVVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HCCcHHHHHHHHhCCCcccccC-CCCCccccCCCCccchhh
Confidence            77777777777776       5 666666666666655443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=1.2e-13  Score=117.27  Aligned_cols=104  Identities=29%  Similarity=0.308  Sum_probs=91.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887          264 IHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL  343 (394)
Q Consensus       264 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  343 (394)
                      |.-|+..|-+++|+.++..-.+. ..-+..|-|+||-|+-.|+++||++|++.|++       +|+.|.+||||||+|+.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan-------VNa~DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN-------VNAADSDGWTPLHCAAS  625 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc-------ccCccCCCCchhhhhhh
Confidence            45578899999999999876665 77888999999999999999999999999999       99999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCcccCCCcHHHHH
Q 040887          344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA  375 (394)
Q Consensus       344 ~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a  375 (394)
                      .+++.+++.|++.|+|-+-.+=.++.|+.+-+
T Consensus       626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             cCchHHHHHHHhccceEEeeecccccchhhhc
Confidence            99999999999999665555666788887755

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.41  E-value=1.7e-12  Score=102.09  Aligned_cols=118  Identities=19%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             ChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHH
Q 040887          229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD  308 (394)
Q Consensus       229 ~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  308 (394)
                      .||.-++..+..+....|++.--.++.+|..|.++|..|+..|+.++++.|++.+.+.....+..++||||+|+..|+.+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d   93 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD   93 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence            34444444444433333333322244444444444444444444444444444444443334444444444444444444


Q ss_pred             HHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL  353 (394)
Q Consensus       309 ~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  353 (394)
                      +-++|++.|+.       ....|.-|+|+-.+|+.-|+.++|..+
T Consensus        94 vcrllldaGa~-------~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   94 VCRLLLDAGAR-------MYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             HHHHHHhccCc-------cccccchhhhHHHHHHHhcchHHHHHH
Confidence            44444444444       333444444444444444444444433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.41  E-value=1.3e-12  Score=122.42  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=91.3

Q ss_pred             ChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHH
Q 040887          229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD  308 (394)
Q Consensus       229 ~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  308 (394)
                      ..|+.|+..|+.+.+++|+..|++++.++..|.||||+|+..|+.+++++|++.+++. +.+|..|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHH
Confidence            3577888889998899999999999999999999999999999999999999987665 788899999999999999999


Q ss_pred             HHHHHHhCCCCCCcchhhccccCCCCCcHHHHHH
Q 040887          309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       309 ~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      ++++|++++..+....+..+..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999833322222226777777776665443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=2.9e-12  Score=100.76  Aligned_cols=123  Identities=28%  Similarity=0.230  Sum_probs=108.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCC-CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCcccccc-CCCCCcHHHHHHHcCC
Q 040887          195 DKSPLSLAIEMGNTDVLEYILRSLP-SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKK-NKETLYPIHLACKNGH  272 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~-~~~g~~~l~~a~~~~~  272 (394)
                      -..||.-++-.+..+-...|++... .+..+..|.++|..|+..|+.+++++|++.|+|+|.. ...+.||||.|+.+|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            3578999999999998888887644 5788899999999999999999999999999999865 4567899999999999


Q ss_pred             HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCC
Q 040887          273 ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPG  318 (394)
Q Consensus       273 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  318 (394)
                      .++.+.|++.+... ...+.-|+|+-.+|+--|+.+.|..+-.+-.
T Consensus        92 ~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t  136 (396)
T KOG1710|consen   92 QDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNHIT  136 (396)
T ss_pred             chHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcccc
Confidence            99999999988776 6788899999999999999999998865543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=2.5e-12  Score=109.45  Aligned_cols=116  Identities=21%  Similarity=0.138  Sum_probs=98.4

Q ss_pred             HHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHH
Q 040887          231 LQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMV  310 (394)
Q Consensus       231 l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  310 (394)
                      |.-|+..|-+++++..+..-.|+...+..|.|+||-|++.|++++|++|++.+... |..|.+||||||+|+..++..++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHHH
Confidence            34577788889999998888888889999999999999999999999999987776 88999999999999999999999


Q ss_pred             HHHHhCCCCCCcchhhccc-cCCCCCcHHHHHH--HcCCHHHHHHHH
Q 040887          311 KAIIEIPGTNMTMDEVVNK-MDEDGNTPLHLAA--LHGHSQVVYALL  354 (394)
Q Consensus       311 ~~Ll~~~~~~~~~~~~~~~-~~~~g~t~L~~A~--~~~~~~~~~~Ll  354 (394)
                      +.|.+.|+.       +-+ .-.++.||..-+-  .-|...|.+||-
T Consensus       633 kqLVe~Gaa-------vfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  633 KQLVESGAA-------VFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHhccce-------EEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            999999987       433 4467788877664  357778888885

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.14  E-value=3e-11  Score=108.44  Aligned_cols=93  Identities=23%  Similarity=0.250  Sum_probs=83.5

Q ss_pred             HHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC-CCCcHHHHHHHcCCHHHHHHHHh
Q 040887          277 VELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE-DGNTPLHLAALHGHSQVVYALLR  355 (394)
Q Consensus       277 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~  355 (394)
                      .++-+.+....+.+|..|+|+||+|+..+..++++||+.+|.+       ++.+|. .|+||||-|+.+|+++++-.||.
T Consensus        35 ~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-------v~vqD~ESG~taLHRaiyyG~idca~lLL~  107 (1267)
T KOG0783|consen   35 GFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-------VFVQDEESGYTALHRAIYYGNIDCASLLLS  107 (1267)
T ss_pred             HHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-------eeeccccccchHhhHhhhhchHHHHHHHHh
Confidence            3444555555688899999999999999999999999999999       888886 68999999999999999999999


Q ss_pred             cCCCCCCCcccCCCcHHHHHHh
Q 040887          356 YGRSNPDLKNKQGMTAYKMALR  377 (394)
Q Consensus       356 ~g~ad~~~~~~~g~t~l~~a~~  377 (394)
                      +| +-+.++|++|++||+..++
T Consensus       108 ~g-~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  108 KG-RSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             cC-CceEEecccCCCHHHHHhh
Confidence            99 8999999999999999887

>PF13606 Ank_3: Ankyrin repeat

Probab=99.10  E-value=1.2e-10  Score=60.38  Aligned_cols=29  Identities=31%  Similarity=0.598  Sum_probs=21.6

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhhccCCC
Q 040887           75 QGDTPLHCAARAGKLNTATALVDFAKHIP  103 (394)
Q Consensus        75 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  103 (394)
                      +|+||||+||+.|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36777777777777777777777777764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.09  E-value=6.4e-11  Score=99.66  Aligned_cols=89  Identities=24%  Similarity=0.199  Sum_probs=83.9

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      -.++++|++.||+..+++....+.|+    ++.|.+.+|+||+||..|+.+++|+|++....+++.+|..|+|||.-|..
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~----~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDL----ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccc----cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            35789999999999999988888887    88999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhh
Q 040887           86 AGKLNTATALVDF   98 (394)
Q Consensus        86 ~~~~~~v~~Ll~~   98 (394)
                      .+|.+++++|-+.
T Consensus       583 F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  583 FKHKEVVKLLEEA  595 (622)
T ss_pred             cCcHHHHHHHHHH
Confidence            9999999999986

>PF13606 Ank_3: Ankyrin repeat

Probab=99.07  E-value=2.3e-10  Score=59.29  Aligned_cols=30  Identities=47%  Similarity=0.731  Sum_probs=27.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 040887          333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDL  363 (394)
Q Consensus       333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~  363 (394)
                      +|+||||+|++.|+.+++++|+++| +|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g-advn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG-ADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC-CCCCC
Confidence            5899999999999999999999998 88874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.01  E-value=6.8e-10  Score=59.58  Aligned_cols=33  Identities=45%  Similarity=0.794  Sum_probs=30.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCccc
Q 040887          333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNK  366 (394)
Q Consensus       333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~  366 (394)
                      +|+||||+|+..|+.+++++|+++| ++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCCC
Confidence            5899999999999999999999999 99998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.90  E-value=7.1e-09  Score=89.64  Aligned_cols=112  Identities=25%  Similarity=0.305  Sum_probs=91.8

Q ss_pred             HHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcC
Q 040887          266 LACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG  345 (394)
Q Consensus       266 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  345 (394)
                      .|+..+.+--++....++++. ..++.+..+.||+|+..|+-++|+||+++|+.     .+++..+..|.|+||.|+..+
T Consensus       872 ~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~-----elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  872 RAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-----ELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-----HHHHHHhhhhhHHHHHHHHhc
Confidence            344444333333444455555 66788889999999999999999999999987     457888999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       346 ~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +-.++++|++.| +.+.-+|..|.||-+-|.+.|..+..
T Consensus       946 ~r~vc~~lvdag-asl~ktd~kg~tp~eraqqa~d~dla  983 (1004)
T KOG0782|consen  946 NRAVCQLLVDAG-ASLRKTDSKGKTPQERAQQAGDPDLA  983 (1004)
T ss_pred             chHHHHHHHhcc-hhheecccCCCChHHHHHhcCCchHH
Confidence            999999999999 99999999999999999888766553

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.85  E-value=3.9e-09  Score=89.64  Aligned_cols=93  Identities=24%  Similarity=0.246  Sum_probs=77.8

Q ss_pred             cccCCHHHHHHHHhccchhhhhccCCccchhhHhhhc-CCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHH
Q 040887            2 EEVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKV-LTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPL   80 (394)
Q Consensus         2 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   80 (394)
                      +..+..+||.+++.|+++...+++.-+++.    +.. .+.|.||||+|++.|+.-=++.|+-.|+ ++...|..|+||+
T Consensus       130 ~~~LsrQLhasvRt~nlet~LRll~lGA~~----N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA-D~~a~d~~GmtP~  204 (669)
T KOG0818|consen  130 AKDLSKQLHSSVRTGNLETCLRLLSLGAQA----NFFHPEKGNTPLHVAAKAGQILQAELLAVYGA-DPGAQDSSGMTPV  204 (669)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHccccc----CCCCcccCCchhHHHHhccchhhhhHHhhccC-CCCCCCCCCCcHH
Confidence            345678999999999999998844444433    223 3559999999999999999999988866 8999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhhc
Q 040887           81 HCAARAGKLNTATALVDFA   99 (394)
Q Consensus        81 ~~A~~~~~~~~v~~Ll~~g   99 (394)
                      .+|=..|+.++.+.|++.-
T Consensus       205 ~~AR~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  205 DYARQGGHHELAERLVEIQ  223 (669)
T ss_pred             HHHHhcCchHHHHHHHHHH
Confidence            9999999999999999873

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.82  E-value=2.1e-08  Score=85.35  Aligned_cols=87  Identities=23%  Similarity=0.334  Sum_probs=75.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHH
Q 040887          263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       263 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      -||..++.|+.+..-.|+..+++....-...|.||||+|++.|+.--+++|.-+|++       +++.|.+|.||+.+|-
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-------~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-------PGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-------CCCCCCCCCcHHHHHH
Confidence            488889999999988888888887555556799999999999999999999999999       8999999999999999


Q ss_pred             HcCCHHHHHHHHhc
Q 040887          343 LHGHSQVVYALLRY  356 (394)
Q Consensus       343 ~~~~~~~~~~Ll~~  356 (394)
                      ..|+-+++.-|++.
T Consensus       209 ~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  209 QGGHHELAERLVEI  222 (669)
T ss_pred             hcCchHHHHHHHHH
Confidence            99998777777654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.81  E-value=8.6e-09  Score=55.23  Aligned_cols=33  Identities=36%  Similarity=0.667  Sum_probs=29.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC
Q 040887          293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE  332 (394)
Q Consensus       293 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  332 (394)
                      +|.||||+|+.+|+.+++++|+++|++       ++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~-------~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD-------INARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC-------TTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC-------CCCCCC
Confidence            589999999999999999999999999       777763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.78  E-value=7.5e-09  Score=87.50  Aligned_cols=93  Identities=25%  Similarity=0.253  Sum_probs=77.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcH
Q 040887          258 KETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTP  337 (394)
Q Consensus       258 ~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~  337 (394)
                      .++..++++|+..|....++.+.-.+.+. +.+|.+.+|+||+|+..|+.+++++|++....+      ++.+|..|+||
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~------~~~kDRw~rtP  576 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD------PDPKDRWGRTP  576 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCC------CChhhccCCCc
Confidence            34456788899999999888888776665 888888899999999999999999998876554      78888899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcC
Q 040887          338 LHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       338 L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      |.-|...++.+++++|-++-
T Consensus       577 lDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             chHhHhcCcHHHHHHHHHHh
Confidence            99999999999999887764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.71  E-value=1e-08  Score=92.72  Aligned_cols=83  Identities=19%  Similarity=0.249  Sum_probs=55.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC
Q 040887          253 ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT-DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD  331 (394)
Q Consensus       253 ~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  331 (394)
                      .+.+|..|+++||+++..+...+++||++++.+. ...| ..|+||||.|+.+|++|++-.|+++|..       +..+|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-------L~i~D  116 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-------LRIKD  116 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCc-------eEEec
Confidence            3456666777777777777777777777765554 3333 3567777777777777777777777766       66677


Q ss_pred             CCCCcHHHHHHH
Q 040887          332 EDGNTPLHLAAL  343 (394)
Q Consensus       332 ~~g~t~L~~A~~  343 (394)
                      ++|..||..-++
T Consensus       117 keglsplq~~~r  128 (1267)
T KOG0783|consen  117 KEGLSPLQFLSR  128 (1267)
T ss_pred             ccCCCHHHHHhh
Confidence            777777766665

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.70  E-value=2.7e-08  Score=85.68  Aligned_cols=89  Identities=21%  Similarity=0.266  Sum_probs=77.4

Q ss_pred             HHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHc
Q 040887            7 PAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARA   86 (394)
Q Consensus         7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~   86 (394)
                      .++|+++...+.+....+....  ....+..+|..|.||||+|+..|+.+.++.|+..++ ++..+|..|++|||-|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~--~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~A-dv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK--VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGA-DVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh--hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCC-CccccccccccHHHHHHHc
Confidence            4589999999998888744433  344567899999999999999999999999999977 7899999999999999999


Q ss_pred             CcHHHHHHHHhh
Q 040887           87 GKLNTATALVDF   98 (394)
Q Consensus        87 ~~~~~v~~Ll~~   98 (394)
                      |+.+++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            999999888876

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.70  E-value=3.8e-08  Score=85.35  Aligned_cols=100  Identities=19%  Similarity=0.192  Sum_probs=79.1

Q ss_pred             cccCCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHH
Q 040887            2 EEVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLH   81 (394)
Q Consensus         2 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   81 (394)
                      |+.+-.+|+-|....|+..+..++-.+......-...+.+|+|+||+||+.|++.+.++|+= ++.|+..+|..|+|+|.
T Consensus       621 e~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~  699 (749)
T KOG0705|consen  621 EEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALF  699 (749)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhh
Confidence            34455688899999998888774333322211122345678999999999999999999994 46689999999999999


Q ss_pred             HHHHcCcHHHHHHHHhhccCC
Q 040887           82 CAARAGKLNTATALVDFAKHI  102 (394)
Q Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~  102 (394)
                      ||=+.|..+|+..|+.+|+-.
T Consensus       700 yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hHhhcccHHHHHHHHHcCCCc
Confidence            999999999999999998754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.68  E-value=9.3e-08  Score=82.96  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=98.7

Q ss_pred             HHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CccccCCCchHHHHHHHcCCHHHHHH
Q 040887          234 ATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP-SLFVTDNGCNILHFAAKNGHADMVKA  312 (394)
Q Consensus       234 a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~  312 (394)
                      |+..+.+--.+-....|-+.-.++.+..+.||+|+..|+-++|+|++++++.. ....+..|.|+||-|+-.++..+..+
T Consensus       873 av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~  952 (1004)
T KOG0782|consen  873 AVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQL  952 (1004)
T ss_pred             HHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHH
Confidence            34444443333445567778888999999999999999999999999998764 35567889999999999999999999


Q ss_pred             HHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       313 Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      |.+.|+.       +-..|..|.||-.-|-+.|+.+++.||-...
T Consensus       953 lvdagas-------l~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  953 LVDAGAS-------LRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHhcchh-------heecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            9999999       8889999999999999999999999986543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.63  E-value=1.1e-07  Score=82.06  Aligned_cols=88  Identities=23%  Similarity=0.329  Sum_probs=54.9

Q ss_pred             HHHHHHHcCCHHHHHHHH-HhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHH
Q 040887          263 PIHLACKNGHANVMVELL-KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA  341 (394)
Q Consensus       263 ~l~~a~~~~~~~~v~~Ll-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A  341 (394)
                      |+|.++.....+-+...+ ..-...+..+|..|+||||+|+..|+.+.++.|+..|++       +..+|+.|++|||.|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-------v~~kN~~gWs~L~EA   95 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-------VSIKNNEGWSPLHEA   95 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-------ccccccccccHHHHH
Confidence            366666555544433322 223334455666677777777777777777777777776       666777777777777


Q ss_pred             HHcCCHHHHHHHHhcC
Q 040887          342 ALHGHSQVVYALLRYG  357 (394)
Q Consensus       342 ~~~~~~~~~~~Ll~~g  357 (394)
                      +..|+..++..++.+.
T Consensus        96 v~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHcCCHHHHHHHHHHh
Confidence            7777766666665543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.53  E-value=2.8e-07  Score=80.16  Aligned_cols=87  Identities=24%  Similarity=0.295  Sum_probs=73.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCC---CccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHH
Q 040887          264 IHLACKNGHANVMVELLKEWRCP---SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHL  340 (394)
Q Consensus       264 l~~a~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~  340 (394)
                      |..|+....+..+-.|+.++...   ....+.+|.|+||+|++.|+..+.++|+=+|.+       +-++|.+|+|+|.|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-------v~~rda~g~t~l~y  700 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-------VMARDAHGRTALFY  700 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-------ceecccCCchhhhh
Confidence            45566666677777777765332   123456789999999999999999999999999       99999999999999


Q ss_pred             HHHcCCHHHHHHHHhcC
Q 040887          341 AALHGHSQVVYALLRYG  357 (394)
Q Consensus       341 A~~~~~~~~~~~Ll~~g  357 (394)
                      |-+.|..+++..|+++|
T Consensus       701 ar~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  701 ARQAGSQECIDVLLQYG  717 (749)
T ss_pred             HhhcccHHHHHHHHHcC
Confidence            99999999999999999

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.38  E-value=3.2e-07  Score=86.20  Aligned_cols=80  Identities=30%  Similarity=0.578  Sum_probs=75.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHH
Q 040887          293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAY  372 (394)
Q Consensus       293 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l  372 (394)
                      .|.|+||.|+.++..-+.++|+++|++       +|.+|..|+||||.+...|+...+..|++.| +++++.+..|++|+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~-------vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~~~~~~~~l  726 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD-------VNALDSKGRTPLHHATASGHTSIACLLLKRG-ADPNAFDPDGKLPL  726 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc-------chhhhccCCCcchhhhhhcccchhhhhcccc-ccccccCccCcchh
Confidence            468999999999999999999999999       9999999999999999999999999999998 99999999999999


Q ss_pred             HHHHhhhh
Q 040887          373 KMALREYY  380 (394)
Q Consensus       373 ~~a~~~~~  380 (394)
                      ++|.....
T Consensus       727 ~~a~~~~~  734 (785)
T KOG0521|consen  727 DIAMEAAN  734 (785)
T ss_pred             hHHhhhcc
Confidence            99977633

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.33  E-value=3.5e-06  Score=77.39  Aligned_cols=102  Identities=18%  Similarity=0.117  Sum_probs=70.1

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhcc---
Q 040887          252 SALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVN---  328 (394)
Q Consensus       252 ~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~---  328 (394)
                      ++|..|.-|+++|+.|..+.+.+++++|++.....        ..+|.+|+..|..++|+.++.+...........+   
T Consensus        54 ninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~  125 (822)
T KOG3609|consen   54 NINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANS  125 (822)
T ss_pred             chhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCc
Confidence            45667777888888888888888888887753221        4577778888888888888876654322111011   


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 040887          329 KMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD  362 (394)
Q Consensus       329 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~  362 (394)
                      ..-..+-|||.+|+..++.+|++.||.+| +.+.
T Consensus       126 ~~ft~ditPliLAAh~NnyEil~~Ll~kg-~~i~  158 (822)
T KOG3609|consen  126 PHFTPDITPLMLAAHLNNFEILQCLLTRG-HCIP  158 (822)
T ss_pred             ccCCCCccHHHHHHHhcchHHHHHHHHcC-CCCC
Confidence            11234569999999999999999999998 5543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.31  E-value=2.5e-06  Score=70.63  Aligned_cols=58  Identities=16%  Similarity=0.178  Sum_probs=53.5

Q ss_pred             hHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCC
Q 040887           44 SLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHI  102 (394)
Q Consensus        44 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (394)
                      --|..||+.|+.+.|++|++. +.++|++|....+||.+|+-.||.++|++|+++||=.
T Consensus        38 ~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            348999999999999999996 5689999999999999999999999999999999843

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.27  E-value=3.8e-06  Score=77.19  Aligned_cols=30  Identities=27%  Similarity=0.323  Sum_probs=21.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCC
Q 040887          193 IEDKSPLSLAIEMGNTDVLEYILRSLPSGI  222 (394)
Q Consensus       193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  222 (394)
                      .-+-||+.+|+..++.|+++.|++++..-.
T Consensus       129 t~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  129 TPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             CCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            345678888888888888888887665433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.23  E-value=5.2e-06  Score=62.03  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=33.1

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhC
Q 040887          252 SALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI  316 (394)
Q Consensus       252 ~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  316 (394)
                      ++|.+|..|+|++++|++.|..+.+.||+..+...+...|..|.+++.+|-+.|..+++..|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            34445555555555555555555555555555344444555555555555555555555555444

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.16  E-value=7.5e-06  Score=67.89  Aligned_cols=56  Identities=23%  Similarity=0.269  Sum_probs=38.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 040887          263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGT  319 (394)
Q Consensus       263 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  319 (394)
                      -|..||+.|..+.|++|++ .+.++|.+|.-..+||.+|+..||.+++++|+++|+.
T Consensus        39 elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            3566777777777777776 5666777777777777777777777777777777764

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.14  E-value=2.6e-06  Score=79.95  Aligned_cols=122  Identities=22%  Similarity=0.281  Sum_probs=91.8

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCC
Q 040887          255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG  334 (394)
Q Consensus       255 ~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g  334 (394)
                      .....|.+.+|+++..+...+++.+++.........|.+|...+|+ |..++.+.+-+|+......      ++.+|..|
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~a------i~i~D~~G  641 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVA------IDIRDRNG  641 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccc------cccccCCC
Confidence            4456778999999999999999999885222225567777778888 4455566555555443332      88999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCC------CcccCCCcHHHHHHhhhhcchh
Q 040887          335 NTPLHLAALHGHSQVVYALLRYGRSNPD------LKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       335 ~t~L~~A~~~~~~~~~~~Ll~~g~ad~~------~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +||||+|..+|+..++..|++.| +++.      ..+..|.|+-.+|..+|+....
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lg-a~~~~~tdps~~~p~g~ta~~la~s~g~~gia  696 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELG-ADPGAVTDPSPETPGGKTAADLARANGHKGIA  696 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhc-cccccccCCCCCCCCCCchhhhhhcccccchH
Confidence            99999999999999999999888 5544      3455788999999888876554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.06  E-value=1.1e-05  Score=60.24  Aligned_cols=69  Identities=17%  Similarity=0.042  Sum_probs=61.5

Q ss_pred             CCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcC-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC
Q 040887          218 LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNG-YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP  286 (394)
Q Consensus       218 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g-~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~  286 (394)
                      ++.+..+..|+|++++|+..|..+.+.+|+..| +.+...+.++.+++.+|-+.|..+++..|.+.....
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            355778899999999999999999999999999 889999999999999999999999999998874443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.00  E-value=1e-05  Score=76.38  Aligned_cols=87  Identities=23%  Similarity=0.324  Sum_probs=50.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHH
Q 040887          259 ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPL  338 (394)
Q Consensus       259 ~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L  338 (394)
                      .|.++||.|+..+..-+.++|++++++ ++.+|..|+||+|.+...|+...+..|++.|++.       ++.+.+|.+||
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-------~a~~~~~~~~l  726 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADP-------NAFDPDGKLPL  726 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccccccc-------cccCccCcchh
Confidence            455566666666666666666665555 3566666666666666666666666666666654       34455666666


Q ss_pred             HHHHHcCCHHHHHHH
Q 040887          339 HLAALHGHSQVVYAL  353 (394)
Q Consensus       339 ~~A~~~~~~~~~~~L  353 (394)
                      ++|....+.+++-+|
T Consensus       727 ~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  727 DIAMEAANADIVLLL  741 (785)
T ss_pred             hHHhhhccccHHHHH
Confidence            666554555444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.96  E-value=7.5e-06  Score=76.99  Aligned_cols=133  Identities=17%  Similarity=0.102  Sum_probs=91.5

Q ss_pred             CCCCCCCChHHHHHhcCCHHHHHHHHhc-CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHH
Q 040887          222 ISWSSGKSPLQVATKKRNLGVCYLLEVN-GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHF  300 (394)
Q Consensus       222 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~-g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  300 (394)
                      .....|.+.+|+++..+..-++..+++. |......+.+|...+|. |-.+.++....++......++.+|..|+||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3446678888888888888777777765 55555666667777777 444555555555555555568888888888888


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040887          301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY  356 (394)
Q Consensus       301 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  356 (394)
                      |+.+|+..++..|++.|+..... .......-.|.|+-.+|-.+|+..+..+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~-tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAV-TDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccc-cCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            88888888888888888774311 11222334578888888888887777666554

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.80  E-value=2.7e-05  Score=67.08  Aligned_cols=72  Identities=26%  Similarity=0.316  Sum_probs=56.4

Q ss_pred             CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhh
Q 040887          305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE  378 (394)
Q Consensus       305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~  378 (394)
                      ...+.+++|.+++.+. ....-....+....|+||+|+.+|...+|.+||+.| +||.++|..|+||++++...
T Consensus       402 ~~p~~ie~lken~lsg-nf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSG-NFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             CchhHHHHHHhcCCcc-cccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccccH
Confidence            4577889999888762 000011223445679999999999999999999999 99999999999999998743

>smart00248 ANK ankyrin repeats

Probab=97.48  E-value=0.00021  Score=36.46  Aligned_cols=27  Identities=44%  Similarity=0.652  Sum_probs=18.3

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhhccCC
Q 040887           76 GDTPLHCAARAGKLNTATALVDFAKHI  102 (394)
Q Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (394)
                      |.||+|+|+..++.+++++|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            566777777777777777777666543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.35  E-value=0.00044  Score=35.17  Aligned_cols=29  Identities=52%  Similarity=0.746  Sum_probs=23.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 040887          333 DGNTPLHLAALHGHSQVVYALLRYGRSNPD  362 (394)
Q Consensus       333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~  362 (394)
                      .|.||+|+|+..++.+++++|++.+ .+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~-~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKG-ADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence            3678999999889999999998887 5553

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.54  E-value=0.047  Score=41.41  Aligned_cols=139  Identities=14%  Similarity=0.087  Sum_probs=87.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHH
Q 040887          197 SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVM  276 (394)
Q Consensus       197 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v  276 (394)
                      ..+..|+..+-..+++..-+.....  -....+.+..||+..+.+++++.-..-     --.+-.+-+.+|......++.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~--~~~~q~LFElAC~~qkydiV~WI~qnL-----~i~~~~~iFdIA~~~kDlsLy  120 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE--RYLNQELFELACEEQKYDIVKWIGQNL-----HIYNPEDIFDIAFAKKDLSLY  120 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc--hhHHHHHHHHHHHHccccHHHHHhhcc-----CCCCchhhhhhhhhccchhHH
Confidence            4566778888888877776654322  134556777888888888888875432     112333456677777766652


Q ss_pred             H---HHHHhcCCCCccccC--CCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887          277 V---ELLKEWRCPSLFVTD--NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       277 ~---~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  351 (394)
                      .   .|+-.........|.  --..-|..|+..|-...+-..+++|.+       ++      +++|..|+.+++..+++
T Consensus       121 slGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~-------~~------~~vls~Av~ynhRkIL~  187 (192)
T PF03158_consen  121 SLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN-------VD------IIVLSQAVKYNHRKILD  187 (192)
T ss_pred             HHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc-------cc------HHHHHHHHHhhHHHHHH
Confidence            1   111111111000000  012347789999999999999999977       43      28999999999999999


Q ss_pred             HHHh
Q 040887          352 ALLR  355 (394)
Q Consensus       352 ~Ll~  355 (394)
                      +++.
T Consensus       188 yfi~  191 (192)
T PF03158_consen  188 YFIR  191 (192)
T ss_pred             Hhhc
Confidence            8875

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.42  E-value=0.034  Score=43.50  Aligned_cols=47  Identities=13%  Similarity=0.127  Sum_probs=33.4

Q ss_pred             HHHHHHHHHhcCCCCcc---ccCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 040887          273 ANVMVELLKEWRCPSLF---VTDNGCNILHFAAKNGHADMVKAIIEIPGT  319 (394)
Q Consensus       273 ~~~v~~Ll~~~~~~~~~---~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  319 (394)
                      ..++++++.++-..++.   +-..|.|.|.-|+++++.+++.+|+++|+.
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            35667777766554443   345688888888888888888888888874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.28  E-value=0.063  Score=40.76  Aligned_cols=136  Identities=17%  Similarity=0.127  Sum_probs=89.8

Q ss_pred             hhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHH-
Q 040887          165 IKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVC-  243 (394)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~-  243 (394)
                      +..++..+-+.++++.-+....-    -...++.+..||+..+.++|+|+-+..    ...+..+.+.+|.......+. 
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL----~i~~~~~iFdIA~~~kDlsLys  121 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNL----HIYNPEDIFDIAFAKKDLSLYS  121 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhcc----CCCCchhhhhhhhhccchhHHH
Confidence            34445555556666655543221    124567889999999999999996543    335556778888888877542 


Q ss_pred             ---HHHHhcCccccccCCC--CCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHh
Q 040887          244 ---YLLEVNGYSALKKNKE--TLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE  315 (394)
Q Consensus       244 ---~~L~~~g~~~~~~~~~--g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  315 (394)
                         .++.....+....+..  -..-|..|+..|...++...++.++.. +      .++|..|+.+++..++.+++.
T Consensus       122 lGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~-~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  122 LGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-D------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-c------HHHHHHHHHhhHHHHHHHhhc
Confidence               2233332211000000  013477899999999999999987775 1      289999999999999999874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.23  E-value=0.0042  Score=54.18  Aligned_cols=42  Identities=24%  Similarity=0.237  Sum_probs=26.1

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887           42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA   84 (394)
Q Consensus        42 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   84 (394)
                      -.|+||+|+..|.-++|.+||+.+ +|+...|..|+||..++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            346666666666666666666665 456666666666666554

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.80  E-value=0.061  Score=42.18  Aligned_cols=91  Identities=20%  Similarity=0.265  Sum_probs=58.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCC--ccccCCCchHHHHHHH--cCCHHHHHHHHhCCCCCCcchhhccc---cCCCC
Q 040887          262 YPIHLACKNGHANVMVELLKEWRCPS--LFVTDNGCNILHFAAK--NGHADMVKAIIEIPGTNMTMDEVVNK---MDEDG  334 (394)
Q Consensus       262 ~~l~~a~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~---~~~~g  334 (394)
                      +++.++..++..+++.+|+.+....-  -..-..+.--+.++..  ..+..++++.++.|..+      +|.   +-+.|
T Consensus       181 ~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~------vN~~F~~~NSG  254 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVD------VNKKFQKVNSG  254 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccc------cchhhhccCCc
Confidence            45555666666666666665422110  0000112223334333  24678999999999765      443   35689


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCC
Q 040887          335 NTPLHLAALHGHSQVVYALLRYGRS  359 (394)
Q Consensus       335 ~t~L~~A~~~~~~~~~~~Ll~~g~a  359 (394)
                      .|-|.-|+++++.+++.+||++| |
T Consensus       255 dtMLDNA~Ky~~~emi~~Llk~G-A  278 (284)
T PF06128_consen  255 DTMLDNAMKYKNSEMIAFLLKYG-A  278 (284)
T ss_pred             chHHHhHHhcCcHHHHHHHHHcC-c
Confidence            99999999999999999999999 5

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.35  E-value=0.044  Score=35.68  Aligned_cols=47  Identities=19%  Similarity=0.097  Sum_probs=37.8

Q ss_pred             hHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhh
Q 040887           44 SLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDF   98 (394)
Q Consensus        44 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   98 (394)
                      ..+..|+..|+.++++.+++.+..  +      ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--D------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--H------HHHHHHHHHHhhHHHHHHHHHh
Confidence            568889999999999998876421  1      4568999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.43  E-value=0.091  Score=34.21  Aligned_cols=49  Identities=14%  Similarity=0.186  Sum_probs=32.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          295 CNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       295 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      ...+..|+..|+.||++.+++.+..        +      ...+..|+..-+.+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--------~------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--------D------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--------H------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            3456777777777777777765422        1      34677777777777777777764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	394
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-15
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-11
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-15
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-15
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-09
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		5e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		7e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		8e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		9e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		6e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		7e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		7e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		7e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-04
1uoh_A	226	Human Gankyrin Length = 226		2e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		3e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		7e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		7e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 138/345 (40%), Gaps = 31/345 (8%)
Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
           D  + LH AA+ GH  +  K+        N     G TPLH AAR G + T  AL++   
Sbjct: 79  DDQTPLHCAARIGHTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160
                ++     L +    G   + E L      +    +   + LT  H        +A
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLH--------VA 186
Query: 161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS 220
           +         N+L  +   L       S   N    +PL +A +    +V   +L+   S
Sbjct: 187 VHH-------NNLDIVKLLLPRGGSPHSPAWN--GYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 221 GISWS-SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVEL 279
             + S  G +PL +A ++ +  +  LL     +    NK  L P+HL  + GH  V   L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 280 LKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLH 339
           +K         T  G   LH A+  G+  +VK +++           VN   + G +PLH
Sbjct: 298 IKHGVMVD-ATTRMGYTPLHVASHYGNIKLVKFLLQ-------HQADVNAKTKLGYSPLH 349
Query: 340 LAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384
            AA  GH+ +V  LL+ G S P+  +  G T   +A R  Y+  +
Sbjct: 350 QAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVT 393

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 10/181 (5%)
Query: 197 SPLSLAIEMGNTDVLEYIL-RSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
           +PL +A  MG+  +++ +L R     +S    ++PL +A +  +  V   L  N      
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
           K K+   P+H A + GH N MV+LL E        T  G   LH AA+ GH + V A++E
Sbjct: 76  KAKDDQTPLHCAARIGHTN-MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
              +          M + G TPLH+AA +G  +V   LL    ++P+   K G+T   +A
Sbjct: 135 KEASQAC-------MTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVA 186
Query: 376 L 376
           +
Sbjct: 187 V 187

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
           +G++PL +A +  +L V  LL   G     K+K    P+HLA +NGH  V V+LL E   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV-VKLLLEAGA 59
Query: 286 PSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
                  NG   LH AA+NGH ++VK ++E           VN  D++G TPLHLAA +G
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNG 112
Query: 346 HSQVVYALLRYG 357
           H +VV  LL  G
Sbjct: 113 HLEVVKLLLEAG 124

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 202 AIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET 260
           A E GN D ++ +L +      S S GK+PL +A +  +  V  LL   G     K+ + 
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 261 LYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320
             P+HLA +NGH  V+  LL +   P+   +D G   LH AA+NGH ++VK +       
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQGADPNAKDSD-GKTPLHLAAENGHKEVVKLL------- 122
Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           ++     N  D DG TPL LA  HG+ +VV  L + G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
           AA+NG+ D VK ++E           VN  D DG TPLHLAA +GH +VV  LL  G ++
Sbjct: 11  AAENGNKDRVKDLLENGAD-------VNASDSDGKTPLHLAAENGHKEVVKLLLSQG-AD 62
Query: 361 PDLKNKQGMTAYKMALREYYMQ 382
           P+ K+  G T   +A    + +
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKE 84

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG     K+K+   P+HLA + GH  ++  LLK     
Sbjct: 3   GKKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +    D G   LH AA+ GH ++V+ +++  G +      VN  D+DG TPLHLAA  GH
Sbjct: 62  NAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGH 113
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEKS 392
            ++V  LL+ G ++ + ++K G T + +A+RE +    IAE  +K+
Sbjct: 114 LEIVEVLLKAG-ADVNAQDKFGKTPFDLAIREGH--EDIAEVLQKA 156

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 9/157 (5%)
Query: 202 AIEMGNTDVLEYILRS-LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET 260
           A E GN D ++ +L +      S S G++PL  A +  +  +  LL   G     K+ + 
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 261 LYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320
             P+H A +NGH  ++  LL +   P+   +D G   LH+AA+NGH ++VK +       
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSKGADPNAKDSD-GRTPLHYAAENGHKEIVKLL------- 122
Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           ++     N  D DG TPL LA  HG+ ++V  L + G
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG     K+K+   P+HLA + GH  ++  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +    D G   LH AA+ GH ++V+ +++  G +      VN  D+DG TPLHLAA  GH
Sbjct: 74  NAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++V  LL+ G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKAG-ADVNAQDKFGKTAFDISI 154

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
           +G   LH AA+ GH ++V+ +++  G +      VN  D+DG TPLHLAA  GH ++V  
Sbjct: 46  DGYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 353 LLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
           LL+ G ++ + K+K G T   +A RE +++
Sbjct: 99  LLKAG-ADVNAKDKDGYTPLHLAAREGHLE 127

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG     K+K+   P+HLA + GH  ++  LLK     
Sbjct: 3   GKKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +    D G   LH AA+ GH ++V+ +++  G +      VN  D+DG TPLHLAA  GH
Sbjct: 62  NAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGH 113
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++V  LL+ G ++ + ++K G T + +A+
Sbjct: 114 LEIVEVLLKAG-ADVNAQDKFGKTPFDLAI 142

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
           +G   LH AA+ GH ++V+ +++  G +      VN  D+DG TPLHLAA  GH ++V  
Sbjct: 34  DGYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 353 LLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
           LL+ G ++ + K+K G T   +A RE +++
Sbjct: 87  LLKAG-ADVNAKDKDGYTPLHLAAREGHLE 115

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 202 AIEMGNTD-VLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET 260
           A E GN D V + I        S S G++PL  A K+ +  +  LL   G     K+ + 
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 261 LYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320
             P+H A K GH  ++  L+ +    +   +D G   LH+AAK GH ++VK +I   G +
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSD-GRTPLHYAAKEGHKEIVKLLIS-KGAD 128
Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
                 VN  D DG TPL LA  HG+ ++V  L + G
Sbjct: 129 ------VNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG      + +   P+HLA  NGH  ++  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK--NGA 71
Query: 287 SLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
            +  +D  G   LH AA  GH ++V+ +++  G +      VN  D DG+TPLHLAA +G
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLK-HGAD------VNAYDNDGHTPLHLAAKYG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
           H ++V  LL++G ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 202 AIEMGNTD-VLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET 260
           A E GN D V + I        S S G++PL  A +  +  V  LL   G     K+ + 
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 261 LYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320
             P+H A +NGH  V+  L+ +    +   +D G   LH AA+NGH ++VK +I   G +
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSD-GRTPLHHAAENGHKEVVKLLIS-KGAD 128
Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
                 VN  D DG TPL LA  HG+ +VV  L + G
Sbjct: 129 ------VNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG      +   + P+HL   NGH  ++  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK--YAA 71
Query: 287 SLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
            +  +D +G   LH AA  GH ++V+ +++           VN MD  G TPLHLAA  G
Sbjct: 72  DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-------VNAMDYQGYTPLHLAAEDG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
           H ++V  LL+YG ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 11/115 (9%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNM 321
           P+HLA K GH  ++  LLK      +   DN G   LH AA NGH ++V+ +++  G + 
Sbjct: 50  PLHLAAKTGHLEIVEVLLK--YGADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HGAD- 105
Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
                VN  D +G TPLHLAA  GH ++V  LL+YG ++ + ++K G TA+ +++
Sbjct: 106 -----VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG     ++     P+HLA + GH  ++  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +     +G   LH AAK GH ++V+ +++  G ++  D+ +      G+TPLHLAA  GH
Sbjct: 74  NALDF-SGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTI------GSTPLHLAADTGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++V  LL+YG ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
           P+HLA +NGH  V V+LL E          NG   LH AA+NGH ++VK ++E       
Sbjct: 5   PLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
               VN  D++G TPLHLAA +GH +VV  LL  G
Sbjct: 61  ----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 14/162 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG      +   L P+HLA  NG   ++  LLK     
Sbjct: 7   GKKLLEAAAAGQDDEVRILM-ANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK--NGA 63
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
            +  +D+ G   LH AA +GH ++V+ +++  G +      VN  D  G TPLHLAAL G
Sbjct: 64  DVNASDSAGITPLHLAAYDGHLEIVEVLLK-HGAD------VNAYDRAGWTPLHLAALSG 116
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387
             ++V  LL++G ++ + ++  G+TA+ +++ +   Q  +AE
Sbjct: 117 QLEIVEVLLKHG-ADVNAQDALGLTAFDISINQG--QEDLAE 155

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 16/153 (10%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK---EW 283
           GK  L+ A   ++  V  L+  NG      +   L P+HLA  +GH  ++  LLK   + 
Sbjct: 15  GKKLLEAARAGQDDEVRILI-ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 284 RCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343
               ++    G   LH AA  GH ++V+ +++           VN  D  G+TPLHLAA 
Sbjct: 74  DAADVY----GFTPLHLAAMTGHLEIVEVLLKYGAD-------VNAFDMTGSTPLHLAAD 122
Query: 344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            GH ++V  LL+YG ++ + ++K G TA+ +++
Sbjct: 123 EGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG      + +   P+HLA   GH  ++  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +   TD G   LH AA NGH ++V+ +++           VN  D  G TPLHLAA  GH
Sbjct: 74  NARDTD-GWTPLHLAADNGHLEIVEVLLKYGAD-------VNAQDAYGLTPLHLAADRGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++V  LL++G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG      +   L P+HLA   GH  + VE+L +    
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEI-VEVLLKHGAD 72
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
              +   G   LH AA  GH ++V+ +++  G +      VN +D  G+TPLHLAA+ GH
Sbjct: 73  VNAIDIXGSTPLHLAALIGHLEIVEVLLK-HGAD------VNAVDTWGDTPLHLAAIMGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++V  LL++G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG      +   L P+HLA   GH  + VE+L +    
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEI-VEVLLKHGAD 72
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
              +   G   LH AA  GH ++V+ +++  G +      VN +D  G+TPLHLAA+ GH
Sbjct: 73  VNAIDIMGSTPLHLAALIGHLEIVEVLLK-HGAD------VNAVDTWGDTPLHLAAIMGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++V  LL++G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   R+  V  L+  NG      +     P+HLA   GH  ++  LLK     
Sbjct: 15  GKKLLEAARAGRDDEVRILM-ANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           + + T  G   LH AA  GH ++V+ +++  G +      VN  D++G TPLHLAA  GH
Sbjct: 74  NAYDT-LGSTPLHLAAHFGHLEIVEVLLK-NGAD------VNAKDDNGITPLHLAANRGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++V  LL+YG ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   R+  V  L+  NG     ++     P+HLA  NGH  ++  LLK     
Sbjct: 15  GKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +  V   G   L  AA  GH ++V+ +++  G +      VN  D +G+TPLHLAA+ GH
Sbjct: 74  NA-VDHAGMTPLRLAALFGHLEIVEVLLK-NGAD------VNANDMEGHTPLHLAAMFGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++V  LL+ G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKNG-ADVNAQDKFGKTAFDISI 154

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 16/153 (10%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK---EW 283
           G+  L+ A   ++  V  L+  NG      +     P+HLA  +GH  ++  LLK   + 
Sbjct: 15  GRKLLEAARAGQDDEVRILM-ANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 284 RCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343
               +F    G   LH AA  GH ++V+ +++  G +      VN MD DG TPLHLAA 
Sbjct: 74  DASDVF----GYTPLHLAAYWGHLEIVEVLLK-NGAD------VNAMDSDGMTPLHLAAK 122
Query: 344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            G+ ++V  LL++G ++ + ++K G TA+ +++
Sbjct: 123 WGYLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG     ++     P+HLA   GH  ++  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK--NGA 71
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
            +   D+ G   LH AA+ GH ++V+ +++  G +      VN  D  G TPLHLAA  G
Sbjct: 72  DVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGAD------VNASDSHGFTPLHLAAKRG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
           H ++V  LL+ G ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKNG-ADVNAQDKFGKTAFDISI 154

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG  A   +     P+H+A   GH  + VE+L      
Sbjct: 3   GKKLLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEI-VEVLLRNGAD 60
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
              V  NG   LH AA  GH ++V+ +++           VN  D  G TPL+LAA  GH
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-------VNAKDATGITPLYLAAYWGH 113
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++V  LL++G ++ + ++K G TA+ +++
Sbjct: 114 LEIVEVLLKHG-ADVNAQDKFGKTAFDISI 142

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 258 KETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP 317
           K+   P+H A KNGHA  + +LL +    +    D G   LH AAKNGHA++VK +    
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLL---- 61
Query: 318 GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
              +     VN   +DGNTP HLA  +GH ++V  L   G
Sbjct: 62  ---LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG     ++     P+HLA   GH  ++  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK--HGA 71
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
            +   D  G   LH AA  GH ++V+ +++  G +      VN  D  G TPLHLAA  G
Sbjct: 72  DVNAADKMGDTPLHLAALYGHLEIVEVLLK-NGAD------VNATDTYGFTPLHLAADAG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
           H ++V  LL+YG ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG      +     P+HLA   GH  ++  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK--NGA 71
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
            +   D+ G   LH AA  GH ++V+ +++  G +      VN  D +G TPLHLAA  G
Sbjct: 72  DVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGAD------VNANDHNGFTPLHLAANIG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
           H ++V  LL++G ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 13/213 (6%)
Query: 184 DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGV 242
           D  L+   + + ++ L  A   G+T+++E++L+  +P      +G SPL +A       +
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFA 301
              L V G      N+    P+H A       + V LL+    P     D+     +H A
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMHRA 146
Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
           A  G+  MV  ++    +        N  D +GNTPLHLA      +    L+  G S  
Sbjct: 147 AAKGNLKMVHILLFYKAS-------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-I 198
Query: 362 DLKNKQGMTAYKMALREY-YMQTSIAEKQEKSM 393
            ++NK+  T  ++A      +   +AE +E SM
Sbjct: 199 YIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 13/213 (6%)
Query: 184 DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGV 242
           D  L+   + + ++ L  A   G+T+++E++L+  +P      +G SPL +A       +
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFA 301
              L V G      N+    P+H A       + V LL+    P     D+     +H A
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMHRA 146
Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
           A  G+  MV  ++    +        N  D +GNTPLHLA      +    L+  G S  
Sbjct: 147 AAKGNLKMVHILLFYKAS-------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-I 198
Query: 362 DLKNKQGMTAYKMALREY-YMQTSIAEKQEKSM 393
            ++NK+  T  ++A      +   +AE +E SM
Sbjct: 199 YIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 244 YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAK 303
           ++  ++ YS     K T Y I+  C+      +VE   + R P          +LH+AA 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRE-----LVEAGYDVRQPD----KENVTLLHWAAI 51
Query: 304 NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN-TPLHLAALHGHSQVVYALLRYGRSNPD 362
           N   D+VK  I       +   +V+++  D N TPLH A   GH  +V  L++YG ++P 
Sbjct: 52  NNRIDLVKYYI-------SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPS 103
Query: 363 LKNKQGMTAYKMALREYYMQTSI 385
           L + +G +   +A +  +  TSI
Sbjct: 104 LIDGEGCSCIHLAAQ--FGHTSI 124

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Query: 222 ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
           ++   G SPL VA       +  LL  +G +A  +N +   P+HLAC+ GH  V+  LL 
Sbjct: 81  VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 282 EWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA 341
               P+     +G   L +A   GH ++V  +++   +       +N  +  GNT LH A
Sbjct: 141 SNAKPNKKDL-SGNTPLIYACSGGHHELVALLLQHGAS-------INASNNKGNTALHEA 192
Query: 342 ALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
            +  H  VV  LL +G S   L NK+  TA   A
Sbjct: 193 VIEKHVFVVELLLLHGASVQVL-NKRQRTAVDCA 225

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 311 KAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMT 370
           K + ++P + +     VN   +DG++PLH+AALHG + ++  LL++G +N   +N     
Sbjct: 67  KRLAKVPASGLG----VNVTSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAV 121
Query: 371 AYKMALREYYMQT 383
              +A ++ + Q 
Sbjct: 122 PLHLACQQGHFQV 134

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
           D G   LH AAK GH ++V+ +++  G +      VN  D  G TPLHLAA  GH ++V 
Sbjct: 45  DAGVTPLHLAAKRGHLEIVEVLLK-HGAD------VNASDSWGRTPLHLAATVGHLEIVE 97
Query: 352 ALLRYGRSNPDLKNKQGMTAYKMAL 376
            LL YG ++ + ++K G TA+ +++
Sbjct: 98  VLLEYG-ADVNAQDKFGKTAFDISI 121

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
           D G   LH AAK GH ++V+ +++  G +      VN  D  G TPLHLAA  GH ++V 
Sbjct: 45  DAGVTPLHLAAKRGHLEIVEVLLK-HGAD------VNARDIWGRTPLHLAATVGHLEIVE 97
Query: 352 ALLRYGRSNPDLKNKQGMTAYKMAL 376
            LL YG ++ + ++K G TA+ +++
Sbjct: 98  VLLEYG-ADVNAQDKFGKTAFDISI 121

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
           D G   LH AAK GH ++V+ +++  G +      VN  D  G TPLHLAA  GH ++V 
Sbjct: 45  DAGVTPLHLAAKRGHLEIVEVLLK-HGAD------VNASDIWGRTPLHLAATVGHLEIVE 97
Query: 352 ALLRYGRSNPDLKNKQGMTAYKMAL 376
            LL YG ++ + ++K G TA+ +++
Sbjct: 98  VLLEYG-ADVNAQDKFGKTAFDISI 121

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNM 321
           P+H AC+ G + V+  L+   R   + V + G +  LH AA +GH D+V+ +++      
Sbjct: 42  PLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-- 97
Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
                +N ++E GN PLH A   G  QV   L+  G
Sbjct: 98  -----INAVNEHGNVPLHYACFWGQDQVAEDLVANG 128

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
           + ++G   LH AA+ GH ++V+ +++           VN  D  G TPLHLAA+ GH ++
Sbjct: 43  LDEDGLTPLHLAAQLGHLEIVEVLLKYGAD-------VNAEDNFGITPLHLAAIRGHLEI 95
Query: 350 VYALLRYGRSNPDLKNKQGMTAYKMAL 376
           V  LL++G ++ + ++K G TA+ +++
Sbjct: 96  VEVLLKHG-ADVNAQDKFGKTAFDISI 121

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNM 321
           P+H AC+ G + V+  L+   R   + V + G +  LH AA +GH D+V+ +++      
Sbjct: 37  PLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-- 92
Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
                +N ++E GN PLH A   G  QV   L+  G
Sbjct: 93  -----INAVNEHGNVPLHYACFWGQDQVAEDLVANG 123

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 8/83 (9%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           G   LH AA   H ++V+ +++  G +      VN  D DG+TPLHLAAL GH ++V  L
Sbjct: 47  GNTPLHLAADYDHLEIVEVLLK-HGAD------VNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 354 LRYGRSNPDLKNKQGMTAYKMAL 376
           L++G ++ + ++K G TA+ +++
Sbjct: 100 LKHG-ADVNAQDKFGKTAFDISI 121

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           G  ++H AA+ G  D ++ ++E           VN  D +GN PLHLAA  GH +VV  L
Sbjct: 70  GFAVIHDAARAGQLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
           +++  SN   +N +G TA  +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 8/83 (9%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           G   LH AA N H ++V+ +++  G +      VN +D  G TPLHL A++GH ++V  L
Sbjct: 47  GLTPLHLAAMNDHLEIVEVLLK-NGAD------VNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 354 LRYGRSNPDLKNKQGMTAYKMAL 376
           L++G ++ + ++K G TA+ +++
Sbjct: 100 LKHG-ADVNAQDKFGKTAFDISI 121

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           G  ++H AA+ G  D ++ ++E           VN  D +GN PLHLAA  GH +VV  L
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
           +++  SN   +N +G TA  +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           G  ++H AA+ G  D ++ ++E           VN  D +GN PLHLAA  GH +VV  L
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
           +++  SN   +N +G TA  +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           G  ++H AA+ G  D ++ ++E           VN  D +GN PLHLAA  GH +VV  L
Sbjct: 70  GNAVIHDAARAGFLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
           +++  SN   +N +G TA  +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           G  ++H AA+ G  D ++ ++E           VN  D +GN PLHLAA  GH +VV  L
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLENQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
           +++  SN   +N +G TA  +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
           P+H A K G+ + + E L   R     +   G   L++A   GH D+V+ +   P   + 
Sbjct: 76  PLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL- 133
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
                N+ ++ G+T LH AA  G++ +V  LL  G +  DL+N +   A+  A
Sbjct: 134 -----NQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDXA 180

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 69/189 (36%), Gaps = 48/189 (25%)
Query: 196 KSPLSLAIEMGNTDVLEYILRSLPSGISWSSGK--SPLQVATKKRNLGVCYLLEVNGYSA 253
           K  L  A   GN + L  +L  L      S G+  +PL +A     + +  LL  +G   
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Query: 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAI 313
             K+K  L P+H AC  GH  V   LLK   C                            
Sbjct: 85  HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---------------------------- 116
Query: 314 IEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYK 373
                        VN MD    TPLH AA     +V   LL +G ++P L N  G +A  
Sbjct: 117 -------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHG-ADPTLVNCHGKSAVD 162
Query: 374 MA----LRE 378
           MA    LRE
Sbjct: 163 MAPTPELRE 171

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
           AA+ G  D V+ +       M     VN  D+DG TPLHLAA  GH ++V  LL+ G ++
Sbjct: 9   AARAGQDDEVRIL-------MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-AD 60
Query: 361 PDLKNKQGMTAYKMAL 376
            + ++K G TA+ +++
Sbjct: 61  VNAQDKFGKTAFDISI 76

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 11/185 (5%)
Query: 196 KSPLSLAIEMGNTDVLEYILRSLPSGISWSSG-KSPLQVATKKRNL-GVCYLLEVNGYSA 253
           +SPL  A E G+ D+   ++++  +  + S   ++PL  A +  +L  V YL++  G   
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALV 70
Query: 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAI 313
             K+ E    +HLA K GH  V+  LL   +       D G   + +A +  H D+VK +
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 314 IEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYK 373
           +   G++      +N  D + N  LH AA  G   +   LL   + +    N  G +   
Sbjct: 131 LS-KGSD------INIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLH 182
Query: 374 MALRE 378
           +A RE
Sbjct: 183 IAARE 187

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
           G   + +ELLK+   P++  T +G + +H AA+ G  D +K ++E  G +      VN  
Sbjct: 52  GSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGFLDTLKVLVE-HGAD------VNVP 103
Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
           D  G  P+HLA   GH+ VV  L     S+   ++ +G+T  ++AL+ 
Sbjct: 104 DGTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQR 149

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
           G   + +ELLK+   P++  T +G + +H AA+ G  D +K ++E  G +      VN  
Sbjct: 46  GSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGFLDTLKVLVE-HGAD------VNVP 97
Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
           D  G  P+HLA   GH+ VV  L     S+   ++ +G+T  ++AL+ 
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQR 143

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 271 GHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK 329
           G   V +ELLK+   P+  V D +G + +H AA+ G  D +K ++E  G +      VN 
Sbjct: 52  GSPAVALELLKQGASPN--VQDASGTSPVHDAARTGFLDTLKVLVE-HGAD------VNA 102
Query: 330 MDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
           +D  G+ P+HLA   GHS VV  L     S+   ++  G+T  ++A
Sbjct: 103 LDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTPLELA 146

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 271 GHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK 329
           G   V +ELLK+   P+  V D +G + +H AA+ G  D +K ++E  G +      VN 
Sbjct: 54  GSPAVALELLKQGASPN--VQDASGTSPVHDAARTGFLDTLKVLVE-HGAD------VNA 104
Query: 330 MDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
           +D  G+ P+HLA   GHS VV  L     S+   ++  G+T  ++A
Sbjct: 105 LDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTPLELA 148

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 227 GKSPLQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
           G++ L +A+ K ++  V YLL+ NG     K+     P+H AC +GH  V VELL + + 
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKV-VELLLQHKA 67
Query: 286 PSLFVTDNGCNILHFAAKNGHADMVKAII 314
                     + LH AAKNGH D+VK ++
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 12/194 (6%)
Query: 184 DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGV 242
           D  L+   + + ++ L  A   G+T+++E++L+  +P      +G SPL +A       +
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFA 301
              L   G      N+    P+H A       + V LL+    P     D+     +H A
Sbjct: 89  VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMHRA 146
Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
           A  G+  M+  ++    +        N  D +GNTPLHLA      +    L+  G S  
Sbjct: 147 AAKGNLKMIHILLYYKAS-------TNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-I 198
Query: 362 DLKNKQGMTAYKMA 375
            ++NK+  T  ++A
Sbjct: 199 YIENKEEKTPLQVA 212

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 11/160 (6%)
Query: 184 DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGV 242
           D  L+   + + ++ L  A   G+T+++E++L+  +P      +G SPL +A       +
Sbjct: 30  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFA 301
              L   G      N+    P+H A       + V LL+    P     D+     +H A
Sbjct: 90  VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMHRA 147
Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA 341
           A  G+  M+  ++    +        N  D +GNTPLHLA
Sbjct: 148 AAKGNLKMIHILLYYKAS-------TNIQDTEGNTPLHLA 180

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 43/150 (28%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           GK  L+ A   ++  V  L+  NG     K++  L P++LA  +GH  ++  LLK     
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK----- 68
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
                 NG +                              VN +D  G TPLHLAA  GH
Sbjct: 69  ------NGAD------------------------------VNAVDAIGFTPLHLAAFIGH 92
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            ++   LL++G ++ + ++K G TA+ +++
Sbjct: 93  LEIAEVLLKHG-ADVNAQDKFGKTAFDISI 121

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           G   LH+AA+  +  +VK ++   G+N       +K DEDG TP+ LAA  G  +VV  L
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNK------DKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 354 LRYGRS 359
           ++ G S
Sbjct: 333 IQQGAS 338

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           G   L  A  +G  D+VKA++            VN  D+DG+T L  A  HGH ++   L
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEAD-------VNVQDDDGSTALMCACEHGHKEIAGLL 235
Query: 354 LRYGRSNPDLKNKQGMTAYKMAL 376
           L     +  L ++ G TA  +AL
Sbjct: 236 LAVPSCDISLTDRDGSTALMVAL 258

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
           G  +++  ++ E   PSL   D G   LH A   GH ++VK +++  G N      VN  
Sbjct: 48  GEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQF-GVN------VNAA 99
Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYG 357
           D DG TPLH AA   + QV   L+  G
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESG 126

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           LH AA  GH ++V+ +++  G +      VN     G TPLHLAA   H ++V  LL++G
Sbjct: 51  LHLAAMLGHLEIVEVLLK-NGAD------VNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
Query: 358 RSNPDLKNKQGMTAYKMAL 376
            ++ + ++K G TA+ +++
Sbjct: 104 -ADVNAQDKFGKTAFDISI 121

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
           G  +++  ++ E   PSL   D G   LH A   GH ++VK +++  G N      VN  
Sbjct: 48  GEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQF-GVN------VNAA 99
Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYG 357
           D DG TPLH AA   + QV   L+  G
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESG 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-22
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-23
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-23
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-04
2pnn_A	273	Transient receptor potential cation channel subfa	5e-21
2pnn_A	273	Transient receptor potential cation channel subfa	1e-18
2pnn_A	273	Transient receptor potential cation channel subfa	1e-12
2pnn_A	273	Transient receptor potential cation channel subfa	2e-10
2etb_A	256	Transient receptor potential cation channel subfam	3e-20
2etb_A	256	Transient receptor potential cation channel subfam	2e-17
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	7e-09
2etb_A	256	Transient receptor potential cation channel subfam	1e-08
2etb_A	256	Transient receptor potential cation channel subfam	6e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-17
2rfa_A	232	Transient receptor potential cation channel subfa	3e-17
2rfa_A	232	Transient receptor potential cation channel subfa	8e-16
2rfa_A	232	Transient receptor potential cation channel subfa	1e-07
2rfa_A	232	Transient receptor potential cation channel subfa	1e-06
2rfa_A	232	Transient receptor potential cation channel subfa	4e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-07

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  131 bits (331), Expect = 5e-35
 Identities = 83/389 (21%), Positives = 120/389 (30%), Gaps = 124/389 (31%)

Query: 12  AAIRGNIDD---FLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYY 65
           AA  GN +     L     +    D            S+ LH+AA      I        
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASD---------GRKSTPLHLAAGYNRVRIVQ------ 75

Query: 66  PFLI------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAM 119
             L+      +  +  G  PLH A   G       L+           A V+     +  
Sbjct: 76  -LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK--------HGACVN---AMDLW 123

Query: 120 GNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYF 179
             T LHEA                                            + V +   
Sbjct: 124 QFTPLHEA-----------------------------------------ASKNRVEVCSL 142

Query: 180 LVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRN 239
           L+S     +   N   KS + +A      + L Y             G S LQ A +   
Sbjct: 143 LLSHGADPTL-VNCHGKSAVDMAPTPELRERLTYEF----------KGHSLLQAAREADL 191

Query: 240 LGVCYLLEVNGY-SALKKNKETLYPIHLACKNGHANV--MVELLKEWRCPSLFVTDNGCN 296
             V   L +        ++ ET   +H A  + H     + ELL             G N
Sbjct: 192 AKVKKTLALEIINFKQPQSHET--ALHCAVASLHPKRKQVAELL----------LRKGAN 239

Query: 297 I----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +          LH AA+  H D+++ + +  G        +N +D  G T LH AAL GH
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAK------MNALDSLGQTALHRAALAGH 292

Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
            Q    LL YG S+P + + QG TA +M 
Sbjct: 293 LQTCRLLLSYG-SDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  102 bits (257), Expect = 1e-24
 Identities = 59/344 (17%), Positives = 104/344 (30%), Gaps = 96/344 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFL------INKTNNQGDTPLHCAARAGKLNTATA 94
                L  AA+SG+ E           L       + ++ +  TPLH AA   ++     
Sbjct: 23  YKKDELLEAARSGNEEKLMA------LLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFL 154
           L+           A V     ++  G   LH A               G           
Sbjct: 77  LLQ--------HGADVH---AKDKGGLVPLHNA------------CSYGH---------- 103

Query: 155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYI 214
                                +   L+     ++   ++   +PL  A      +V   +
Sbjct: 104 -------------------YEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLL 143

Query: 215 LRSLPSG----ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN 270
           L     G    +    GKS + +A               G+S L            A + 
Sbjct: 144 LS---HGADPTLVNCHGKSAVDMAPTPELRERLTYE-FKGHSLL-----------QAARE 188

Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA---DMVKAIIEIPGTNMTMDEVV 327
                + + L      +     +    LH A  + H     + + ++   G N      V
Sbjct: 189 ADLAKVKKTLAL-EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GAN------V 240

Query: 328 NKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           N+ ++D  TPLH+AA   H+ V+  L ++G +  +  +  G TA
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTA 283

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.6 bits (213), Expect = 9e-19
 Identities = 59/350 (16%), Positives = 98/350 (28%), Gaps = 116/350 (33%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G   LH A   GH E+T         L+      N  +    TPLH AA   ++   + 
Sbjct: 90  GGLVPLHNACSYGHYEVTE-------LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFL 154
           L+           A   L    N  G +A+  A               G SL  A     
Sbjct: 143 LLS--------HGADPTL---VNCHGKSAVDMAPTP-ELRERLTYEFKGHSLLQAARE-- 188

Query: 155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYI 214
                             L  +   L          +    ++ L  A+   +    +  
Sbjct: 189 ----------------ADLAKVKKTLALEIINFK--QPQSHETALHCAVASLHPKRKQ-- 228

Query: 215 LRSLPSGISWSSGKSPLQVATKKRNLGVCYLLE----VNGYSALKKNKETLYPIHLACKN 270
                             VA          LL     VN     +KNK+ + P+H+A + 
Sbjct: 229 ------------------VAE--------LLLRKGANVN-----EKNKDFMTPLHVAAER 257

Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTN 320
            H +V +E+L            +G  +          LH AA  GH    + ++   G++
Sbjct: 258 AHNDV-MEVL----------HKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSD 305

Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMT 370
                  + +   G T   +       + V  +L    +     +     
Sbjct: 306 ------PSIISLQGFTAAQMGN-----EAVQQILSES-TPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.6 bits (200), Expect = 5e-17
 Identities = 56/318 (17%), Positives = 86/318 (27%), Gaps = 99/318 (31%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEAL 128
              T       L  AAR+G      AL                     +   +T LH A 
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMAL--LTPL-----NVNCH---ASDGRKSTPLHLA- 65

Query: 129 FMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS 188
                      +                                 V I   L+     + 
Sbjct: 66  -----------AGYNR-----------------------------VRIVQLLLQHGADV- 84

Query: 189 CCKNIEDK---SPLSLAIEMGNTDVLEYILRSLPSGISW----SSGKSPLQVATKKRNLG 241
              + +DK    PL  A   G+ +V E +L+    G           +PL  A  K  + 
Sbjct: 85  ---HAKDKGGLVPLHNACSYGHYEVTELLLK---HGACVNAMDLWQFTPLHEAASKNRVE 138

Query: 242 VCYLL-----EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCN 296
           VC LL     +      +  + ++   + +A         +    +              
Sbjct: 139 VCSLLLSHGADPT---LVNCHGKS--AVDMAPTPELRER-LTYEFKGHSL---------- 182

Query: 297 ILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS---QVVYAL 353
               AA+      VK  + +         +  K  +   T LH A    H    QV   L
Sbjct: 183 --LQAAREADLAKVKKTLALEI-------INFKQPQSHETALHCAVASLHPKRKQVAELL 233

Query: 354 LRYGRSNPDLKNKQGMTA 371
           LR G +N + KNK  MT 
Sbjct: 234 LRKG-ANVNEKNKDFMTP 250

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 37/243 (15%), Positives = 63/243 (25%), Gaps = 74/243 (30%)

Query: 37  KVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLN---TAT 93
                G SLL  AA+        K          +  +  +T LHCA  +        A 
Sbjct: 174 TYEFKGHSLLQ-AAREADLAKVKKTLALEIINFKQPQS-HETALHCAVASLHPKRKQVAE 231

Query: 94  ALVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSY 152
            L+          + A V+    +N    T LH A            +            
Sbjct: 232 LLL---------RKGANVN---EKNKDFMTPLHVA------------AERAH-------- 259

Query: 153 FLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLE 212
                                  +   L     K++   +   ++ L  A   G+     
Sbjct: 260 ---------------------NDVMEVLHKHGAKMN-ALDSLGQTALHRAALAGHLQTCR 297

Query: 213 YILRSLPSG----ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC 268
            +L     G    I    G +  Q+  +     V  +L  +      +  +  Y +  A 
Sbjct: 298 LLLS---YGSDPSIISLQGFTAAQMGNEA----VQQILSES---TPMRTSDVDYRLLEAS 347

Query: 269 KNG 271
           K G
Sbjct: 348 KAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 27/89 (30%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           AA R + D  + L      +   D         + G + LH AA +GH +          
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALD---------SLGQTALHRAALAGHLQTCR------- 297

Query: 67  FLI------NKTNNQGDTPLHCAARAGKL 89
            L+      +  + QG T       A + 
Sbjct: 298 LLLSYGSDPSIISLQGFTAAQMGNEAVQQ 326

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (328), Expect = 5e-34
 Identities = 79/368 (21%), Positives = 128/368 (34%), Gaps = 112/368 (30%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + LH+AA+ GH E           L+           +G TPLH AA+ GK+  A  
Sbjct: 112 AGHTPLHIAAREGHVETVL-------ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFL 154
           L++          A  +        G T LH A                +          
Sbjct: 165 LLE--------RDAHPN---AAGKNGLTPLHVA------------VHHNN---------- 191

Query: 155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYI 214
                              + I   L+               +PL +A +    +V   +
Sbjct: 192 -------------------LDIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQVEVARSL 231

Query: 215 LRSLPSGISW----SSGKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIH 265
           L+    G S       G +PL +A ++ +  +   LL      N       NK  L P+H
Sbjct: 232 LQY---GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-----LGNKSGLTPLH 283

Query: 266 LACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIE 315
           L  + GH  V  ++L            +G  +          LH A+  G+  +VK +++
Sbjct: 284 LVAQEGHVPV-ADVL----------IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332

Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
               +      VN   + G +PLH AA  GH+ +V  LL+ G ++P+  +  G T   +A
Sbjct: 333 H-QAD------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIA 384

Query: 376 LREYYMQT 383
            R  Y+  
Sbjct: 385 KRLGYISV 392

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  118 bits (299), Expect = 7e-30
 Identities = 69/307 (22%), Positives = 120/307 (39%), Gaps = 69/307 (22%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEAL 128
                  G TPLH A+  G L     L+           A  ++    N    T LH A 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQ--------RGASPNV---SNVKVETPLHMA- 54

Query: 129 FMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS 188
                      + AG                                +A +L+    K++
Sbjct: 55  -----------ARAGH-----------------------------TEVAKYLLQNKAKVN 74

Query: 189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSG----ISWSSGKSPLQVATKKRNLGVCY 244
             K  +D++PL  A  +G+T++++ +L    +     ++ ++G +PL +A ++ ++    
Sbjct: 75  A-KAKDDQTPLHCAARIGHTNMVKLLL---ENNANPNLATTAGHTPLHIAAREGHVETVL 130

Query: 245 LLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN 304
            L     S     K+   P+H+A K G   V  ELL E          NG   LH A  +
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRV-AELLLERDAHPNAAGKNGLTPLHVAVHH 189

Query: 305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLK 364
            + D+VK ++   G +       +    +G TPLH+AA     +V  +LL+YG  + + +
Sbjct: 190 NNLDIVKLLLPR-GGS------PHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAE 241

Query: 365 NKQGMTA 371
           + QG+T 
Sbjct: 242 SVQGVTP 248

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (285), Expect = 4e-28
 Identities = 75/347 (21%), Positives = 109/347 (31%), Gaps = 127/347 (36%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           D  + LH AA+ GH  +          L+      N     G TPLH AAR G + T  A
Sbjct: 79  DDQTPLHCAARIGHTNMVK-------LLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFL 154
           L++         +A           G T LH A            +  G           
Sbjct: 132 LLE--------KEASQA---CMTKKGFTPLHVA------------AKYGK---------- 158

Query: 155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYI 214
                              V +A  L+  D   +        +PL +A+   N D+++ +
Sbjct: 159 -------------------VRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLL 198

Query: 215 LRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHAN 274
           L                         G       +   +   N  T  P+H+A K     
Sbjct: 199 L-----------------------PRGG----SPH---SPAWNGYT--PLHIAAKQNQVE 226

Query: 275 VMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMD 324
           V   LL             G +           LH AA+ GHA+MV  ++     N    
Sbjct: 227 VARSLL-----------QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QAN---- 270

Query: 325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
              N  ++ G TPLHL A  GH  V   L+++G    D   + G T 
Sbjct: 271 --GNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTP 314

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (285), Expect = 5e-28
 Identities = 75/346 (21%), Positives = 119/346 (34%), Gaps = 125/346 (36%)

Query: 41  DGSSLLHVAAKSGHGEITAKI-----AQYYPFLINKTNNQGDTPLHCAARAGKLNTATAL 95
              + LH+AA++GH E+ AK      A+     +N       TPLHCAAR G  N    L
Sbjct: 46  KVETPLHMAARAGHTEV-AKYLLQNKAK-----VNAKAKDDQTPLHCAARIGHTNMVKLL 99

Query: 96  VDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLS 155
           ++        + A  +   +    G+T LH A            +  G            
Sbjct: 100 LE--------NNANPN---LATTAGHTPLHIA------------AREGH----------- 125

Query: 156 NPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL 215
                             V     L+  +   +C    +  +PL +A + G   V E +L
Sbjct: 126 ------------------VETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLL 166

Query: 216 RSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANV 275
                                            N        K  L P+H+A  + + ++
Sbjct: 167 ---------ERD------------------AHPN-----AAGKNGLTPLHVAVHHNNLDI 194

Query: 276 MVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDE 325
            V+LL             G +           LH AAK    ++ +++++  G +     
Sbjct: 195 -VKLL----------LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY-GGS----- 237

Query: 326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
             N     G TPLHLAA  GH+++V  LL    +N +L NK G+T 
Sbjct: 238 -ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTP 281

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.9 bits (237), Expect = 1e-21
 Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 39/198 (19%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSG----ISWSSGKSPLQVATKKRNLGVC-YL 245
           ++++  +PL LA + G+ +++  +L          +   SG +PL +  ++ ++ V   L
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSK---QANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 246 LEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-------- 297
           ++ +G       +    P+H+A   G+  + V+ L            +  ++        
Sbjct: 298 IK-HGVMVDATTRMGYTPLHVASHYGNIKL-VKFL----------LQHQADVNAKTKLGY 345

Query: 298 --LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
             LH AA+ GH D+V  +++  G +       N++  DG TPL +A   G+  V   L  
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKN-GAS------PNEVSSDGTTPLAIAKRLGYISVTDVLKV 398

Query: 356 YGR--SNPDLKNKQGMTA 371
                S   + +K  M+ 
Sbjct: 399 VTDETSFVLVSDKHRMSF 416

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.0 bits (227), Expect = 2e-20
 Identities = 56/316 (17%), Positives = 101/316 (31%), Gaps = 82/316 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + LHVA    + +I          L+      +     G TPLH AA+  ++  A +
Sbjct: 178 NGLTPLHVAVHHNNLDIVK-------LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFL 154
           L+              +    E+  G T LH A            +  G           
Sbjct: 231 LLQ--------YGGSAN---AESVQGVTPLHLA------------AQEGH---------- 257

Query: 155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYI 214
                                +   L+S     +   N    +PL L  + G+  V + +
Sbjct: 258 -------------------AEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVADVL 297

Query: 215 LRSLPSG----ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN 270
           ++    G     +   G +PL VA+   N+ +   L  +      K K    P+H A + 
Sbjct: 298 IKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354

Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP--GTNMTMDEVVN 328
           GH ++ V LL +       V+ +G   L  A + G+  +   +  +    +       V 
Sbjct: 355 GHTDI-VTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF------VL 407

Query: 329 KMDEDGNTPLHLAALH 344
             D+   +        
Sbjct: 408 VSDKHRMSFPETVDEI 423

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 58/283 (20%), Positives = 94/283 (33%), Gaps = 107/283 (37%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + LH+AA+ GH E+ A        L+      N  N  G TPLH  A+ G +  A  
Sbjct: 244 QGVTPLHLAAQEGHAEMVA-------LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFL 154
           L+             VD       MG T LH A            S  G+          
Sbjct: 297 LIK--------HGVMVDA---TTRMGYTPLHVA------------SHYGN---------- 323

Query: 155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYI 214
                              + +  FL+     ++  K     SPL  A + G+TD++  +
Sbjct: 324 -------------------IKLVKFLLQHQADVN-AKTKLGYSPLHQAAQQGHTDIVTLL 363

Query: 215 LRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHAN 274
           L          +G SP     +  +         +G + L           +A + G+ +
Sbjct: 364 L---------KNGASP----NEVSS---------DGTTPL----------AIAKRLGYIS 391

Query: 275 VMVELLKEWRCPSLFVTDNGCNILHF-AAKNGHADMVKAIIEI 316
           V  ++LK        VTD    +L     +    + V  I+++
Sbjct: 392 V-TDVLKV-------VTDETSFVLVSDKHRMSFPETVDEILDV 426

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 38/127 (29%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
            A  G++   D L      +               G + LHVA+  G+ ++         
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATT---------RMGYTPLHVASHYGNIKLVK------- 328

Query: 67  FLI------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120
           FL+      N     G +PLH AA+ G  +  T L+         + A  +     ++ G
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK--------NGASPN---EVSSDG 377

Query: 121 NTALHEA 127
            T L  A
Sbjct: 378 TTPLAIA 384

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.3 bits (111), Expect = 9e-06
 Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 35/125 (28%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           A+  GNI    FL     D+  +            G S LH AA+ GH +I         
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKT---------KLGYSPLHQAAQQGHTDIVT------- 361

Query: 67  FLI------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120
            L+      N+ ++ G TPL  A R G ++    L                   + +   
Sbjct: 362 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL--------VSDKHR 413

Query: 121 NTALH 125
            +   
Sbjct: 414 MSFPE 418

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  125 bits (317), Expect = 7e-33
 Identities = 45/359 (12%), Positives = 95/359 (26%), Gaps = 102/359 (28%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
            G   +H+A  +   ++          L+     +G  P        +            
Sbjct: 83  HGQKPIHLAVMANKTDL-VV------ALVEGAKERGQMPESLLNECDEREVNEIGSH--- 132

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160
                         +++  G TALH                 G                 
Sbjct: 133 --------------VKHCKGQTALHWC------------VGLG----------------- 149

Query: 161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS 220
                        + +   LV L    +  K+  D++PL  A+E  N + L+ ++ ++PS
Sbjct: 150 ----------PEYLEMIKILVQLGASPTA-KDKADETPLMRAMEFRNREALDLMMDTVPS 198

Query: 221 G------ISWSSGKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACK 269
                   +   G S L  A       V    +E    VN      ++ E   P++L+ +
Sbjct: 199 KSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-----MEDNEHTVPLYLSVR 253

Query: 270 NGHANVMVELLKEWRCPS-------------LFVTDNGCNILHFAAKNGHADMVKAIIEI 316
                +  + L +                  L       + +  AA     ++++ + E 
Sbjct: 254 AAMVLL-TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312

Query: 317 PGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
                     V +    G              V    L    +    +++    +  ++
Sbjct: 313 -LDE------VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS-APVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  110 bits (277), Expect = 3e-27
 Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 98/318 (30%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
             K++++    +H AAR G+ +    L+                   ++N  G TALH A
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLI---------ETGVSPT---IQNRFGCTALHLA 60

Query: 128 LFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKL 187
                          G                              V  A +L       
Sbjct: 61  ------------CKFGC-----------------------------VDTAKYL------A 73

Query: 188 SCCKNIEDK---SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCY 244
           S  +         P+ LA+    TD++  ++       +   G+ P  +  +        
Sbjct: 74  SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG-----AKERGQMPESLLNECDER---- 124

Query: 245 LLEVNGYSALKKNKETLYPIHLACKNGHANV-MVELLKEWRCPSLFVTDNGCNI------ 297
             EVN   +  K+ +    +H     G   + M+++L             G +       
Sbjct: 125 --EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL----------VQLGASPTAKDKA 172

Query: 298 ----LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
               L  A +  + + +  +++   +  ++   ++  ++ GN+ LH A L     V    
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLR--LDYANKQGNSHLHWAILINWEDVAMRF 230

Query: 354 LRYGRSNPDLKNKQGMTA 371
           +  G  + ++++ +    
Sbjct: 231 VEMG-IDVNMEDNEHTVP 247

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  106 bits (266), Expect = 7e-26
 Identities = 61/384 (15%), Positives = 101/384 (26%), Gaps = 129/384 (33%)

Query: 15  RGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLI----- 69
            G++ DF   +  K D          +    +HVAA+ G  +           LI     
Sbjct: 2   PGSMTDFPKLNRIKSD---------DENMEKIHVAARKGQTDEVR-------RLIETGVS 45

Query: 70  -NKTNNQGDTPLHCAARAGKLNTATALVDF-----AKHIPSTSQAPVDLLRMENAMGNTA 123
               N  G T LH A + G ++TA  L          H                  G   
Sbjct: 46  PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH------------------GQKP 87

Query: 124 LHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSL 183
           +H A             +A                                 +   LV  
Sbjct: 88  IHLA------------VMANK-----------------------------TDLVVALVE- 105

Query: 184 DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--SSGKSPLQVATKKRNLG 241
                       + P SL  E    +V E        G       G++ L          
Sbjct: 106 ------GAKERGQMPESLLNECDEREVNEI-------GSHVKHCKGQTALHWCVGLGPEY 152

Query: 242 ---VCYLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSL-----F 289
              +  L++            K+K    P+  A +  +    ++L+ +           +
Sbjct: 153 LEMIKILVQLGASPT-----AKDKADETPLMRAMEFRNREA-LDLMMDTVPSKSSLRLDY 206

Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
               G + LH+A      D+    +E+ G +      VN  D +   PL+L+       +
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRFVEM-GID------VNMEDNEHTVPLYLSVRAAMVLL 259

Query: 350 VYALLRYG--RSNPDLKNKQGMTA 371
              LL+              G T 
Sbjct: 260 TKELLQKTDVFLIQACPYHNGTTV 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 37/139 (26%)

Query: 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKN 304
           K + E +  IH+A + G  +  V  L           + G +           LH A K 
Sbjct: 15  KSDDENMEKIHVAARKGQTDE-VRRL----------IETGVSPTIQNRFGCTALHLACKF 63

Query: 305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLK 364
           G  D  K +  + G         +     G  P+HLA +   + +V AL+          
Sbjct: 64  GCVDTAKYLASV-GEV------HS--LWHGQKPIHLAVMANKTDLVVALVEGA------- 107

Query: 365 NKQGMTAYKMALREYYMQT 383
            ++G     +       + 
Sbjct: 108 KERGQMPESLLNECDEREV 126

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 12/133 (9%), Positives = 27/133 (20%), Gaps = 37/133 (27%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEIT-------A 59
           A +    D          D+  +D          + +  L+++ ++    +T        
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMED---------NEHTVPLYLSVRAAMVLLTKELLQKTD 268

Query: 60  KIAQYYPFL-----INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLR 114
                         +          +  AA   K      L +            V    
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE--------KLDEVV--- 317

Query: 115 MENAMGNTALHEA 127
                G     + 
Sbjct: 318 RSLNTGAGGAVKR 330

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  110 bits (278), Expect = 2e-27
 Identities = 55/359 (15%), Positives = 108/359 (30%), Gaps = 97/359 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
                      +G+  +          +  +   +    LH  A AG       +   + 
Sbjct: 60  YSLYPNPQGYGNGNDFL-GDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESV 117

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160
           +I            ++     T LH              +   S                
Sbjct: 118 NI------------IDPRHNRTVLHWI------------ASNSS---------------- 137

Query: 161 IDDTIKTNIINSLVAIAYFLVSLDPK--LSCCKNIEDKS-----PLSLAIEMGNTDVLEY 213
                           +  L+  + K  ++   ++         PL LA+      ++ Y
Sbjct: 138 -------------AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 214 ILRSLPSGISW--------SSGKSPLQVATKKRNLGVC-YLLEVNGYSAL--KKNKETLY 262
           +       +           S +S L  A   R+ G+  Y+L          + ++  + 
Sbjct: 185 L-------MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237

Query: 263 PIHLACKNGHANV--MVELL--------KEWRCPSLFVTDNGCNILHFAAKNGHADMVKA 312
            + +   N   +     +LL         +           G   LH+AA+  +  +VK 
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297

Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           ++   G+N       +K DEDG TP+ LAA  G  +VV  L++ G ++ +  +    TA
Sbjct: 298 LVGEKGSN------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTA 349

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 98.1 bits (245), Expect = 6e-23
 Identities = 53/342 (15%), Positives = 93/342 (27%), Gaps = 121/342 (35%)

Query: 41  DGSSLLHVAAKSGHGEIT-AKIAQYYPFL------INKTNNQGDTPLHCAARAGKLNTAT 93
              ++LH  A +   E +   I             +N  +   +TPL  A  A +     
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 183

Query: 94  ALVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSY 152
            L+            A      + N    +ALH+A            +       M   Y
Sbjct: 184 YLM---------KAGADPT---IYNKSERSALHQA------------AANRDFGMM--VY 217

Query: 153 FLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLE 212
            L++  L  D       I                     +    + L +       D + 
Sbjct: 218 MLNSTKLKGD-------IEE------------------LDRNGMTALMIVAHNEGRDQVA 252

Query: 213 YILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLE----VNGYSALKKNKETLY---PIH 265
                                           L+E    V+   A +K+ E       +H
Sbjct: 253 S----------------------------AKLLVEKGAKVDYDGAARKDSEKYKGRTALH 284

Query: 266 LACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIE 315
            A +  +  + V+ L         V + G N           +  AA+ G  ++V  +I+
Sbjct: 285 YAAQVSNMPI-VKYL---------VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334

Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
             G +      V  +D   +T   LA  + H  +V    R  
Sbjct: 335 Q-GAS------VEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 51/380 (13%), Positives = 92/380 (24%), Gaps = 112/380 (29%)

Query: 23  FSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHC 82
              +  ++ +    + +T     L  A+  G+ +             N+  +    P   
Sbjct: 18  MPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQ----------RNELQHYSLYPNPQ 67

Query: 83  AARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIA 142
               G                 T+                 LH                A
Sbjct: 68  GYGNGNDFLGDFNH--------TNLQIPT---EPEPESPIKLHTE--------------A 102

Query: 143 GSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLA 202
             S  +                   NII                        +++ L   
Sbjct: 103 AGSYAIT-EPITRE---------SVNII--------------------DPRHNRTVLHWI 132

Query: 203 IEMGNTDVLEY-ILRSLPSGISW--------SSGKSPLQVATKKRNLGVC-YLLE----V 248
               + +  E  I+      I+             +PL +A   R   +  YL++     
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 192

Query: 249 NGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------L 298
                   NK     +H A  N    + +  +       L  T    +I          L
Sbjct: 193 T-----IYNKSERSALHQAAANRDFGM-MVYM-------LNSTKLKGDIEELDRNGMTAL 239

Query: 299 HFAAKNGHADMVKAI-------IEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
              A N   D V +         ++   +       +     G T LH AA   +  +V 
Sbjct: 240 MIVAHNEGRDQVASAKLLVEKGAKV---DYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296

Query: 352 ALLRYGRSNPDLKNKQGMTA 371
            L+    SN D +++ G T 
Sbjct: 297 YLVGEKGSNKDKQDEDGKTP 316

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 28/97 (28%)

Query: 12  AAIRGNID--DFLFS----DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYY 65
           AA   N+    +L      +  KQD          DG + + +AA+ G  E+        
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQD---------EDGKTPIMLAAQEGRIEV-VM----- 330

Query: 66  PFLI------NKTNNQGDTPLHCAARAGKLNTATALV 96
            +LI         +    T    A      N      
Sbjct: 331 -YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  107 bits (269), Expect = 8e-27
 Identities = 54/358 (15%), Positives = 102/358 (28%), Gaps = 109/358 (30%)

Query: 40  TDGSSLLHVAAKSGHGEITAKIAQYYPFLIN-------KTNNQGDTPLHCAARAGKLNTA 92
            + + LL  A ++   ++     Q    L+        +    G TPLH A +  + +  
Sbjct: 3   VEDNHLLIKAVQNEDVDL----VQQ---LLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

Query: 93  TALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSY 152
             L+           A      +    G T    A            +IAGS        
Sbjct: 56  ELLLR--------HGADPV---LRKKNGATPFLLA------------AIAGS-------- 84

Query: 153 FLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLE 212
                                V +    +S    ++   +    +    A   G    L+
Sbjct: 85  ---------------------VKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALK 122

Query: 213 YIL-----------RSLPSGISWSSGKSPLQVATKKRNLGVC-YLLEVNGYSALKKNKET 260
           ++                       G + L  A +K ++ V   LL+  G      +   
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 261 LYPIHLACKNGHANV---MVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHA 307
              +  A  +   +    +  LL           D+G ++          L  A +  H 
Sbjct: 183 RNALIHALLSSDDSDVEAITHLL----------LDHGADVNVRGERGKTPLILAVEKKHL 232

Query: 308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKN 365
            +V+ ++E           +N  D DG T L LA      ++   L + G ++ D  +
Sbjct: 233 GLVQRLLEQEHIE------INDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 88.7 bits (221), Expect = 4e-20
 Identities = 57/333 (17%), Positives = 92/333 (27%), Gaps = 112/333 (33%)

Query: 73  NNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLG 132
             + +  L  A +   ++    L++          A V+    E   G T LH A     
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLE--------GGANVNF--QEEEGGWTPLHNA----- 46

Query: 133 RVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKN 192
                                                      I   L+           
Sbjct: 47  -------VQMSR-----------------------------EDIVELLLRHGAD----PV 66

Query: 193 IEDK---SPLSLAIEMGNTDVLEYILRSLPSGISW--------SSGKSPLQVATKKRNLG 241
           +  K   +P  LA   G+  +L+         +S           G +    A     + 
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLF-------LSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 242 VC-YLLE----VNGYSALKKNKETLY-----PIHLACKNGHANVMVELL----------K 281
              +L +    VN     K+++E L       +  A + GH  V +++L           
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV-LKILLDEMGADVNAC 178

Query: 282 EWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI---PGTNMTMDEVVNKMDEDGNTPL 338
                     + G N L  A  +     V+AI  +    G +      VN   E G TPL
Sbjct: 179 ---------DNMGRNALIHALLSSDDSDVEAITHLLLDHGAD------VNVRGERGKTPL 223

Query: 339 HLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            LA    H  +V  LL       +  +  G TA
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 46/259 (17%), Positives = 89/259 (34%), Gaps = 56/259 (21%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           A      D  + L     D   +           +G++   +AA +G  ++  K      
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRK---------KNGATPFLLAAIAGSVKL-LK------ 89

Query: 67  FLI------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120
             +      N+ +  G T    AA  GK+     L     ++    +   D  R+    G
Sbjct: 90  LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK-GG 148

Query: 121 NTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTL---AIDDTIKT--------NI 169
            TAL +A            +  G    +     L        A D+  +         + 
Sbjct: 149 ATALMDA------------AEKGHVEVL--KILLDEMGADVNACDNMGRNALIHALLSSD 194

Query: 170 INSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--SSG 227
            + + AI + L+     ++  +    K+PL LA+E  +  +++ +L      I+   S G
Sbjct: 195 DSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253

Query: 228 KSPLQVATKKRNLGVCYLL 246
           K+ L +A + +   +  LL
Sbjct: 254 KTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 39/136 (28%)

Query: 11  EAAIRGNID--DFLFS---DIPKQDLH-HIFEKVLTDGSSLLHVAAKSGHGEITAKIAQY 64
           EAA+ G +    FL+    ++  +       E++   G++ L  AA+ GH E+       
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK----- 165

Query: 65  YPFLI-------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLR--- 114
              L+       N  +N G   L  A  +   +   A+                LL    
Sbjct: 166 --ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL-------------LLDHGA 210

Query: 115 ---MENAMGNTALHEA 127
              +    G T L  A
Sbjct: 211 DVNVRGERGKTPLILA 226

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  104 bits (263), Expect = 5e-26
 Identities = 59/348 (16%), Positives = 97/348 (27%), Gaps = 91/348 (26%)

Query: 34  IFEKVLTDGSSLLHVAAKSGHGEITAKIAQY------YPFLINKTNNQGDTPLHCAARAG 87
           +F  V  DG + LH+A    H         +          ++  N+ G T LH AA  G
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPF----LDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56

Query: 88  KLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLT 147
           + +T   L          + A V    +    G+TALH A  +                 
Sbjct: 57  EASTVEKLYA--------AGAGVL---VAERGGHTALHLACRV-RAHTCAC--------- 95

Query: 148 MAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGN 207
                 L        D   T +  S                 C      +P ++  +   
Sbjct: 96  ----VLLQPRPSHPRDASDTYLTQSQD---------------CTPDTSHAPAAVDSQPNP 136

Query: 208 TDVLEYILRSLPSGISW--SSGKSPLQVATKKRNLGVCYLL-----EVNGYSALKKNKET 260
            +  E         +      G +PL VA   ++  +  LL     ++N     K     
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-----KPEPTC 191

Query: 261 LY-PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADM 309
              P+HLA +   A+V +ELL             G +           L  A    +  +
Sbjct: 192 GRTPLHLAVEAQAASV-LELL----------LKAGADPTARMYGGRTPLGSALLRPNPIL 240

Query: 310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
            + +    G          +   D  +P   +     S        Y 
Sbjct: 241 ARLLRAH-GAP------EPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.0 bits (232), Expect = 1e-21
 Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 45/207 (21%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEY--------------ILRSLPSGISWSSGKSPLQVATK 236
                 + L LA  +                         +     +  +  +P  V ++
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133

Query: 237 KRNLG-VCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGC 295
                      E        +N +   P+H+A  +  A + V LL           D G 
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM-VRLL----------RDAGA 182

Query: 296 NI-----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344
           ++           LH A +   A +++ +++  G +             G TPL  A L 
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GAD------PTARMYGGRTPLGSALLR 235

Query: 345 GHSQVVYALLRYGRSNPDLKNKQGMTA 371
            +  +   L  +G +         ++ 
Sbjct: 236 PNPILARLLRAHG-APEPEDGGDKLSP 261

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 76.4 bits (189), Expect = 7e-16
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 289 FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348
           +VT++G   LH A  + H   +  ++          E ++  ++ G T LHLAA+ G + 
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGH---EYLDLQNDLGQTALHLAAILGEAS 59

Query: 349 VVYALLRYGRSNPDLKNKQGMTA 371
            V  L   G +   +  + G TA
Sbjct: 60  TVEKLYAAG-AGVLVAERGGHTA 81

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 14/119 (11%)

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFV---TDNGCNILHFAAKNGHADMVKA 312
           ++ +T   +HLA  + H    ++ L  +     ++    D G   LH AA  G A  V+ 
Sbjct: 7   EDGDT--ALHLAVIHQHEPF-LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           +    G        V   +  G+T LHLA           LL+    +           
Sbjct: 64  LYAA-GAG------VLVAERGGHTALHLACRVRAHTCACVLLQPR-PSHPRDASDTYLT 114

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.1 bits (183), Expect = 4e-15
 Identities = 23/165 (13%), Positives = 44/165 (26%), Gaps = 30/165 (18%)

Query: 226 SGKSPLQVATKKRNLGVC-YLLE--VNGYSALKKNKETLYPIHLACKNGHANVMVELLKE 282
            G + L +A   ++     +LL           +N      +HLA   G A+  VE L  
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST-VEKL-- 64

Query: 283 WRCPSLFVTDNGCNI----------LHFAAKNGHADMVK------AIIEIPGTNMTMDEV 326
                      G  +          LH A +                     ++  + + 
Sbjct: 65  --------YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116

Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            +   +  + P  + +               R   + +N  G T 
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRYG--RSNPDLKNKQGMTA 371
           V   + EDG+T LHLA +H H   +  LL +       DL+N  G TA
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTA 48

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 21/125 (16%), Positives = 32/125 (25%), Gaps = 19/125 (15%)

Query: 12  AAIRGNID--DFLFS-------DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIA 62
           A           L         D     L    +       +   V ++           
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 63  QYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNT 122
           + +   +   N  G TPLH A           L D        + A ++  + E   G T
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD--------AGADLN--KPEPTCGRT 194

Query: 123 ALHEA 127
            LH A
Sbjct: 195 PLHLA 199

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  100 bits (251), Expect = 6e-25
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 40/194 (20%)

Query: 196 KSPLSLAIEMGNTDVLEYILRSLPSG----ISWSSGKSPLQVATKKRNLGVCYLLEVNGY 251
           +  +  A+        + +                  +     T K   G+     +   
Sbjct: 13  QVKVFRALYTFEPRTPDELYIE---EGDIIYITDMSDTNWWKGTSKGRTGL-----IPSN 64

Query: 252 SALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFA 301
              ++ +    P+H A K G+ + + E L           DN   +          L++A
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECL-----------DNRVGVNGLDKAGSTALYWA 113

Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
              GH D+V+ +   P         +N+ ++ G+T LH AA  G++ +V  LL  G +  
Sbjct: 114 CHGGHKDIVEMLFTQPNIE------LNQQNKLGDTALHAAAWKGYADIVQLLLAKG-ART 166

Query: 362 DLKNKQGMTAYKMA 375
           DL+N +   A+ MA
Sbjct: 167 DLRNIEKKLAFDMA 180

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 93.5 bits (233), Expect = 2e-22
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 17/191 (8%)

Query: 192 NIEDK---SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEV 248
                   +        G T ++     S        S  +PL  A K+ NL        
Sbjct: 39  IYITDMSDTNWWKGTSKGRTGLIP----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLD 94

Query: 249 NGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFAAKNGHA 307
           N       +K     ++ AC  GH ++ VE+L       L   +  G   LH AA  G+A
Sbjct: 95  NRVGVNGLDKAGSTALYWACHGGHKDI-VEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153

Query: 308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQ 367
           D+V+ ++   G         +  + +      +A     + ++        +   L N +
Sbjct: 154 DIVQLLLAK-GAR------TDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAE 205

Query: 368 GMTAYKMALRE 378
                + +  E
Sbjct: 206 DYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 13/145 (8%)

Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
           G+  +  A           L +     +     +          G   + +         
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL-IPSNYVAEQ- 69

Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
                ++  N LH AAK G+   ++  ++           VN +D+ G+T L+ A   GH
Sbjct: 70  ----AESIDNPLHEAAKRGNLSWLRECLD-NRVG------VNGLDKAGSTALYWACHGGH 118

Query: 347 SQVVYALLRYGRSNPDLKNKQGMTA 371
             +V  L        + +NK G TA
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTA 143

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 33/244 (13%), Positives = 58/244 (23%), Gaps = 71/244 (29%)

Query: 36  EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATAL 95
             +     +        G   +           + +     D PLH AA+ G L+     
Sbjct: 39  IYITDMSDTNWWKGTSKGRTGLIPSN------YVAEQAESIDNPLHEAAKRGNLSWLREC 92

Query: 96  VDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLS 155
           +D            V+     +  G+TAL+ A               G            
Sbjct: 93  LDNR--------VGVN---GLDKAGSTALYWA------------CHGGH----------- 118

Query: 156 NPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKS---PLSLAIEMGNTDVLE 212
                               I   L +   + +   N ++K     L  A   G  D+++
Sbjct: 119 ------------------KDIVEMLFT---QPNIELNQQNKLGDTALHAAAWKGYADIVQ 157

Query: 213 YILRSLPSGISW----SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC 268
            +L     G          K    +AT      +    +         N E       + 
Sbjct: 158 LLLA---KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214

Query: 269 KNGH 272
              H
Sbjct: 215 LEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 5/79 (6%), Positives = 17/79 (21%), Gaps = 13/79 (16%)

Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
            G   +  A           +    G        +  + +  +T        G + ++ +
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGD-------IIYITDMSDTNWWKGTSKGRTGLIPS 63

Query: 353 LLRYGRSNPDLKNKQGMTA 371
                      + +     
Sbjct: 64  N------YVAEQAESIDNP 76

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 17/92 (18%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + LH AA  G+ +I          L+      +  N +       A  A   +    
Sbjct: 139 LGDTALHAAAWKGYADIVQ-------LLLAKGARTDLRNIEKKLAFDMATNAACASLLKK 191

Query: 95  LVDF-AKHIPSTSQAPVDLLRMENAMGNTALH 125
                A    S ++  +D    E++      H
Sbjct: 192 KQGTDAVRTLSNAEDYLDD---EDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 5/48 (10%), Positives = 10/48 (20%), Gaps = 1/48 (2%)

Query: 328 NKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
            K  + G   +  A      +    L      +         T +   
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEE-GDIIYITDMSDTNWWKG 52

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 97.9 bits (245), Expect = 1e-24
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 41/193 (21%)

Query: 195 DKSPLSLAIEMGNTDVLEYILRSLPSGISWS--SGKSPLQVATKKRNLGVC-YLLE---- 247
           D   +      G  D L+  LR   + ++     G +PL  A+    +    +LLE    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 248 VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI---------- 297
            +    L K +E+   + LA   G+ ++ V LL           +   +I          
Sbjct: 62  PH---ILAKERES--ALSLASTGGYTDI-VGLL----------LERDVDINIYDWNGGTP 105

Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           L +A +  H   V+A++   G +      +    + G TP+ LA   G+ +V   +  + 
Sbjct: 106 LLYAVRGNHVKCVEALLAR-GAD------LTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

Query: 358 RSNPDLKNKQGMT 370
                  N     
Sbjct: 159 -LKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNM 321
            IH     G  +  ++         +   D  G   L +A+  G  + V+ ++E  G + 
Sbjct: 5   SIHQLAAQGELDQ-LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GAD- 61

Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
                 + + ++  + L LA+  G++ +V  LL     + ++ +  G T 
Sbjct: 62  -----PHILAKERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTP 105

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 37/163 (22%)

Query: 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPSG----ISWSSGKSPLQVATKKRNLGVC-Y 244
             +    +PL  A   G  + + ++L     G    I     +S L +A+      +   
Sbjct: 31  KPDERGFTPLIWASAFGEIETVRFLLEW---GADPHILAKERESALSLASTGGYTDIVGL 87

Query: 245 LLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELL------KEWRCPSLFVTDNG 294
           LLE    +N       +     P+  A +  H    VE L                 D+G
Sbjct: 88  LLERDVDIN-----IYDWNGGTPLLYAVRGNHVKC-VEALLARGADLTTE------ADSG 135

Query: 295 CNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTP 337
              +  A   G+  + + I             + + +     P
Sbjct: 136 YTPMDLAVALGYRKVQQVIENH-ILK------LFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 50.5 bits (122), Expect = 8e-08
 Identities = 36/241 (14%), Positives = 69/241 (28%), Gaps = 86/241 (35%)

Query: 42  GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
            S  +H  A  G  +   +  +    L+NK + +G TPL  A+  G++ T   L++    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---- 57

Query: 102 IPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAI 161
                 A      +      +AL  A            S  G                  
Sbjct: 58  ----WGADPH---ILAKERESALSLA------------STGGY----------------- 81

Query: 162 DDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSG 221
                         I   L+  D  ++   +    +PL  A+   +   +E +L      
Sbjct: 82  ------------TDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALL------ 122

Query: 222 ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
              + G      A            ++       +      P+ LA   G+  V  ++++
Sbjct: 123 ---ARG------A------------DLT-----TEADSGYTPMDLAVALGYRKV-QQVIE 155

Query: 282 E 282
            
Sbjct: 156 N 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 24/93 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +  S L +A+  G+ +I          L+      N  +  G TPL  A R   +    A
Sbjct: 68  ERESALSLASTGGYTDI----VGL---LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L+           A +     E   G T +  A
Sbjct: 121 LLA--------RGADLT---TEADSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.8 bits (115), Expect = 7e-07
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 334 GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            +  +H  A  G    +   LR G +  +  +++G T 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTP 39

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.8 bits (115), Expect = 7e-07
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 24/93 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + L  A+  G  E      ++   L+      +    + ++ L  A+  G  +    
Sbjct: 35  RGFTPLIWASAFGEIE----TVRF---LLEWGADPHILAKERESALSLASTGGYTDIVGL 87

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L++            ++   + +  G T L  A
Sbjct: 88  LLE--------RDVDIN---IYDWNGGTPLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 13/63 (20%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + L  A +  H +      +    L+          + G TP+  A   G       
Sbjct: 101 NGGTPLLYAVRGNHVKC----VEA---LLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153

Query: 95  LVD 97
           + +
Sbjct: 154 IEN 156

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 98.3 bits (246), Expect = 6e-24
 Identities = 57/334 (17%), Positives = 104/334 (31%), Gaps = 127/334 (38%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +  S LH AA++GH +I          L+      +  +    TPL  AA    L     
Sbjct: 10  NKRSPLHAAAEAGHVDI-CH------MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYF 153
           L+            A VD    ++A G+T LH A            +  G          
Sbjct: 63  LI---------KAGALVD---PKDAEGSTCLHLA------------AKKGH--------- 89

Query: 154 LSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEY 213
                                 +  +L+S       C++    +P+  A E  + D+++ 
Sbjct: 90  --------------------YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129

Query: 214 ILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA 273
           +L         S G      +            ++N      ++ E    +H A  +G  
Sbjct: 130 LL---------SKG------S------------DIN-----IRDNEENICLHWAAFSGCV 157

Query: 274 NVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTM 323
           ++  E+L              C++          LH AA+    D V   +    ++   
Sbjct: 158 DI-AEIL----------LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSD--- 202

Query: 324 DEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
              V   +++G TPL  A+L+        + +  
Sbjct: 203 ---VTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 94.0 bits (235), Expect = 2e-22
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 37/196 (18%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW----SSGKSPLQVATKKRNLGVC-YL 245
            + + ++PL  A E  + + ++Y++++   G       + G + L +A KK +  V  YL
Sbjct: 40  CSEDQRTPLMEAAENNHLEAVKYLIKA---GALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

Query: 246 LEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-------- 297
           L         ++     P+  A +  H ++ V+LL             G +I        
Sbjct: 97  LSNGQMDVNCQDDGGWTPMIWATEYKHVDL-VKLL----------LSKGSDINIRDNEEN 145

Query: 298 --LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
             LH+AA +G  D+ + ++     +      ++ ++  G++PLH+AA       V   L 
Sbjct: 146 ICLHWAAFSGCVDIAEILLAA-KCD------LHAVNIHGDSPLHIAARENRYDCVVLFLS 198

Query: 356 YGRSNPDLKNKQGMTA 371
              S+  LKNK+G T 
Sbjct: 199 RD-SDVTLKNKEGETP 213

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 89.0 bits (222), Expect = 1e-20
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 28/155 (18%)

Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
            +SPL  A +  ++ +C++L   G +    +++   P+  A +N H    V+ L      
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA-VKYL------ 63

Query: 287 SLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNT 336
                  G  +          LH AAK GH ++V+ ++     +      VN  D+ G T
Sbjct: 64  ----IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD------VNCQDDGGWT 113

Query: 337 PLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           P+  A  + H  +V  LL  G S+ ++++ +    
Sbjct: 114 PMIWATEYKHVDLVKLLLSKG-SDINIRDNEENIC 147

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.1 bits (217), Expect = 5e-20
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 30/126 (23%)

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNG 305
           +NK +  P+H A + GH ++   +L             G NI          L  AA+N 
Sbjct: 9   QNKRS--PLHAAAEAGHVDI-CHML----------VQAGANIDTCSEDQRTPLMEAAENN 55

Query: 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKN 365
           H + VK +I+  G        V+  D +G+T LHLAA  GH +VV  LL  G+ + + ++
Sbjct: 56  HLEAVKYLIKA-GAL------VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108

Query: 366 KQGMTA 371
             G T 
Sbjct: 109 DGGWTP 114

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.5 bits (174), Expect = 3e-14
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 291 TDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
             N  + LH AA+ GH D+   +++  G N      ++   ED  TPL  AA + H + V
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQA-GAN------IDTCSEDQRTPLMEAAENNHLEAV 60

Query: 351 YALLRYGRSNPDLKNKQGMTA 371
             L++ G +  D K+ +G T 
Sbjct: 61  KYLIKAG-ALVDPKDAEGSTC 80

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.4 bits (127), Expect = 5e-08
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
                ++  +PLH AA  GH  + + L++ G +N D  ++   T 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQRTP 47

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 98.3 bits (246), Expect = 6e-24
 Identities = 42/321 (13%), Positives = 89/321 (27%), Gaps = 106/321 (33%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEAL 128
           +   ++     +  A + G       LV+        +   V      +    T LH A 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVE--------AGYDVR---QPDKENVTLLHWA- 49

Query: 129 FMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS 188
                      +I                                + +  + +S    + 
Sbjct: 50  -----------AINNR-----------------------------IDLVKYYISKGAIVD 69

Query: 189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--------SSGKSPLQVATKKRNL 240
                 + +PL  A   G+  ++  +       + +          G S + +A +  + 
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQL-------MKYGADPSLIDGEGCSCIHLAAQFGHT 122

Query: 241 GVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGC 295
            +  YL+     V+    + +N  T  P+  A    H+     LL               
Sbjct: 123 SIVAYLIAKGQDVD---MMDQNGMT--PLMWAAYRTHSVDPTRLL----------LTFNV 167

Query: 296 NI-----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344
           ++           LH+A   G+  ++  ++E  G N      V+  +  G + L LA   
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GAN------VDAQNIKGESALDLAKQR 220

Query: 345 GHSQVVYALLRYGRSNPDLKN 365
            +  ++  L           N
Sbjct: 221 KNVWMINHLQEAR-QAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 96.7 bits (242), Expect = 2e-23
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 32/157 (20%)

Query: 227 GKSPLQVATKKRNLGVC-YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
               +  AT+      C  L+E  GY   + +KE +  +H A  N   ++ V+       
Sbjct: 9   STWDIVKATQYGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDL-VKYY----- 61

Query: 286 PSLFVTDNGCNI-----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG 334
                   G  +           LH+A + GH  MV  +++  G +       + +D +G
Sbjct: 62  -----ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GAD------PSLIDGEG 109

Query: 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            + +HLAA  GH+ +V  L+  G  + D+ ++ GMT 
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTP 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 88.3 bits (220), Expect = 2e-20
 Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 57/207 (27%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGIS---------WSSGKSPLQVATKKRNLG 241
            + E+ + L  A      D+++Y        IS              +PL  AT++ +L 
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYY-------ISKGAIVDQLGGDLNSTPLHWATRQGHLS 90

Query: 242 VC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCN 296
           +   L++     +       + E    IHLA + GH ++ V  L             G +
Sbjct: 91  MVVQLMKYGADPS-----LIDGEGCSCIHLAAQFGHTSI-VAYL----------IAKGQD 134

Query: 297 I----------LHFAAKNGH-ADMVKAIIEIPGTNMTMDEVVNKMDE-DGNTPLHLAALH 344
           +          L +AA   H  D  + ++     +      VN  D+   NT LH A L 
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVS------VNLGDKYHKNTALHWAVLA 187

Query: 345 GHSQVVYALLRYGRSNPDLKNKQGMTA 371
           G++ V+  LL  G +N D +N +G +A
Sbjct: 188 GNTTVISLLLEAG-ANVDAQNIKGESA 213

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 79.8 bits (198), Expect = 2e-17
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 30/128 (23%)

Query: 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKN 304
             +  + + I  A + G        L           + G ++          LH+AA N
Sbjct: 4   HIDDYSTWDIVKATQYGIYER-CREL----------VEAGYDVRQPDKENVTLLHWAAIN 52

Query: 305 GHADMVKAIIEIPGTNMTMDEVVNKMDED-GNTPLHLAALHGHSQVVYALLRYGRSNPDL 363
              D+VK  I   G        V+++  D  +TPLH A   GH  +V  L++YG ++P L
Sbjct: 53  NRIDLVKYYISK-GAI------VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSL 104

Query: 364 KNKQGMTA 371
            + +G + 
Sbjct: 105 IDGEGCSC 112

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.4 bits (127), Expect = 4e-08
 Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           +  +D+     +  A  +G  +    L+  G  +    +K+ +T 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAG-YDVRQPDKENVTL 45

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 24/94 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAG-KLNTAT 93
           +G S +H+AA+ GH  I A       +LI      +  +  G TPL  AA     ++   
Sbjct: 108 EGCSCIHLAAQFGHTSIVA-------YLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
            L+ F           V +   +    NTALH A
Sbjct: 161 LLLTFN----------VSVNLGDKYHKNTALHWA 184

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 24/94 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLIN-------KTNNQGDTPLHCAARAGKLNTAT 93
           +G + L  AA   H     +       L+              +T LH A  AG     +
Sbjct: 141 NGMTPLMWAAYRTHSVDPTR------LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
            L++        + A VD    +N  G +AL  A
Sbjct: 195 LLLE--------AGANVD---AQNIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 37/127 (29%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           AAI   ID   +  S    + +              S+ LH A + GH  +         
Sbjct: 49  AAINNRIDLVKYYISKGAIVDQLGGDL--------NSTPLHWATRQGHLSM----VVQ-- 94

Query: 67  FLI------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120
            L+      +  + +G + +H AA+ G  +    L+             VD   M +  G
Sbjct: 95  -LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA--------KGQDVD---MMDQNG 142

Query: 121 NTALHEA 127
            T L  A
Sbjct: 143 MTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 13/68 (19%)

Query: 36  EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKL 89
                  ++ LH A  +G+  +          L+      +  N +G++ L  A +   +
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTV----ISL---LLEAGANVDAQNIKGESALDLAKQRKNV 223

Query: 90  NTATALVD 97
                L +
Sbjct: 224 WMINHLQE 231

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 97.1 bits (243), Expect = 1e-23
 Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 34/224 (15%)

Query: 171 NSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRS----LPSGISWSS 226
           N    +   L S    L   K+ + + PL  ++     ++  ++L              S
Sbjct: 13  NEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS 71

Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSAL--KKNKETLYPIHLACKNGHANVMVELLKEWR 284
           G +P  +A    NL V   L          K   + +  +HLA       V  + L    
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV-SQFL---- 126

Query: 285 CPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG 334
                  +NG ++          LH AA  G   +++ +  + G +      VN  D+ G
Sbjct: 127 ------IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL-GKS-----AVNWQDKQG 174

Query: 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
            TPL  A   GH      L+    +  DL + +G  A  +AL E
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 92.9 bits (232), Expect = 4e-22
 Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 17/182 (9%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISW--SSGKSPLQVATKKRNLGVCYLL-----EVNG 250
           PL  A        ++ +L S PS +      G+ PL  +   +   +   L      VN 
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 251 YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFAAKNGHADM 309
                 +  T  P H+AC  G+  V+  L      P L    N G   LH A      ++
Sbjct: 65  DDYPDDSGWT--PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122

Query: 310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGM 369
            + +IE  G +      V   D+    PLH AA  G  +++  L   G+S  + ++KQG 
Sbjct: 123 SQFLIEN-GAS------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175

Query: 370 TA 371
           T 
Sbjct: 176 TP 177

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 87.5 bits (218), Expect = 3e-20
 Identities = 48/309 (15%), Positives = 83/309 (26%), Gaps = 89/309 (28%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPST 105
           LH A          ++    P L+ + +  G  PLH +         + L+         
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-------- 57

Query: 106 SQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI 165
               V+L    +  G T  H A  + G + V +                  P        
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSV-GNLEVVK-------------SLYDRPLKP----- 98

Query: 166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWS 225
               +N                      +  + L LA+     +V ++++          
Sbjct: 99  ---DLNK------------------ITNQGVTCLHLAVGKKWFEVSQFLI---------E 128

Query: 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
           +G      A             V       K+K    P+H A   G   ++  L    + 
Sbjct: 129 NG------A------------SVR-----IKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165

Query: 286 PSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
              +    G   L  A   GH D    ++E  G         + +D  G     +A    
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE------YDLVDNKGAKAEDVAL--- 216

Query: 346 HSQVVYALL 354
           + QV    L
Sbjct: 217 NEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.4 bits (127), Expect = 5e-08
 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 29/124 (23%)

Query: 12  AAIRGNID--DFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLI 69
           A   GN++    L+    K DL     K+   G + LH+A      E+ ++      FLI
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDL----NKITNQGVTCLHLAVGKKWFEV-SQ------FLI 127

Query: 70  ------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTA 123
                    +     PLH AA  G L     L           ++ V+    ++  G T 
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLC-------GLGKSAVN---WQDKQGWTP 177

Query: 124 LHEA 127
           L  A
Sbjct: 178 LFHA 181

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.1 bits (121), Expect = 3e-07
 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 27/124 (21%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAK--IAQY 64
           +      +   FL S   ++   D           G +  H+A   G+ E+  K    + 
Sbjct: 43  SVSFQAHEITSFLLSKMENVNLDD------YPDDSGWTPFHIACSVGNLEV-VKSLYDRP 95

Query: 65  YPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQ-APVDLLRMENAMGNTA 123
               +NK  NQG T LH A        +  L+            A V +   ++      
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI---------ENGASVRI---KDKFNQIP 143

Query: 124 LHEA 127
           LH A
Sbjct: 144 LHRA 147

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
                LH AA  G  ++   +       +N  + QG TPL  A   G  + A  LV    
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV---- 194

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEA 127
                  A  D   + +  G  A   A
Sbjct: 195 ---EKYGAEYD---LVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 11/38 (28%), Positives = 14/38 (36%)

Query: 334 GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            N PLH A +      V  LL    S    K++ G   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIP 39

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.7 bits (94), Expect = 7e-04
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 14/52 (26%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI-------NKTNNQGDTPLHCAAR 85
            G + L  A   GHG+           L+       +  +N+G      A  
Sbjct: 173 QGWTPLFHALAEGHGDAAV-------LLVEKYGAEYDLVDNKGAKAEDVALN 217

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 97.5 bits (244), Expect = 1e-23
 Identities = 50/330 (15%), Positives = 98/330 (29%), Gaps = 111/330 (33%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFL---INKTNNQGDTPLHCAARAGKLNTATALVD 97
           DG + LH+A   G+     ++   +      ++  NN   TPLH A      +    LV 
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 98  FAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNP 157
                   + A        +  G TA H A                 S T      L + 
Sbjct: 68  --------AGASPMA---LDRHGQTAAHLA-------------CEHRSPTCL-RALLDSA 102

Query: 158 TLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRS 217
                D      + +                  +N +  + L +A+     + ++ +L  
Sbjct: 103 APGTLD------LEA------------------RNYDGLTALHVAVNTECQETVQLLL-- 136

Query: 218 LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMV 277
                    G      A            +++  +   K+  +  P+  A +N   ++ V
Sbjct: 137 -------ERG------A------------DID--AVDIKSGRS--PLIHAVENNSLSM-V 166

Query: 278 ELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVV 327
           +LL            +G N+          LH A+  G   +V+ ++   G +       
Sbjct: 167 QLL----------LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GAD------S 209

Query: 328 NKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           +  +   +TPL +A       ++       
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 97.1 bits (243), Expect = 2e-23
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 44/230 (19%)

Query: 176 IAYFLVSLDPKLSCCKNIEDKS---PLSLAIEMGNTDVLEYILRSLPSGISWSS----GK 228
             + LV+L  +     +I +     PL LA+      V+  ++ +   G S  +    G+
Sbjct: 24  AVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA---GASPMALDRHGQ 80

Query: 229 SPLQVATKKRNLGVC-YLLEVNGYSALKKNKETLY---PIHLACKNGHANVMVELLKEWR 284
           +   +A + R+      LL+      L            +H+A         V+LL    
Sbjct: 81  TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET-VQLL---- 135

Query: 285 CPSLFVTDNGCNI-----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDED 333
                  + G +I           L  A +N    MV+ +++  G N      VN     
Sbjct: 136 ------LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GAN------VNAQMYS 182

Query: 334 GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT 383
           G++ LH A+  G   +V  L+R G ++  LKN    T   +A     +  
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDI 231

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.7 bits (203), Expect = 5e-18
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKN 304
           + +++   P+H+A   G+    V  L             G  +          LH A   
Sbjct: 4   RADEDGDTPLHIAVVQGNLPA-VHRLVN------LFQQGGRELDIYNNLRQTPLHLAVIT 56

Query: 305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG---RSNP 361
               +V+ ++   G +         +D  G T  HLA  H     + ALL        + 
Sbjct: 57  TLPSVVRLLVTA-GAS------PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109

Query: 362 DLKNKQGMTA 371
           + +N  G+TA
Sbjct: 110 EARNYDGLTA 119

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS---NPDLKNKQGMTA 371
             + DEDG+TPLH+A + G+   V+ L+   +      D+ N    T 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP 49

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 25/127 (19%), Positives = 37/127 (29%), Gaps = 37/127 (29%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           A      +    L     DI   D+          G S L  A ++    +  +      
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIK--------SGRSPLIHAVENNSLSM-VQ------ 167

Query: 67  FLI------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120
            L+      N     G + LH A+  G L     LV         S A      ++N   
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR--------SGADSS---LKNCHN 216

Query: 121 NTALHEA 127
           +T L  A
Sbjct: 217 DTPLMVA 223

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.0 bits (240), Expect = 9e-23
 Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 36/194 (18%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--------SSGKSPLQVATKKRNLGV 242
              +  SPL  A   G+   ++ +       +          +   +PL  A    +   
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKIL-------LKHGAQVNGVTADWHTPLFNACVSGSWDC 140

Query: 243 C-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI 297
              LL+    V      + +  +  PIH A + GH    V  L  +         +    
Sbjct: 141 VNLLLQHGASVQ----PESDLAS--PIHEAARRGHVEC-VNSLIAYGGNIDHKISHLGTP 193

Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           L+ A +N     VK ++E  G +      VN+  +  ++PLH        ++   L+ +G
Sbjct: 194 LYLACENQQRACVKKLLES-GAD------VNQ-GKGQDSPLHAVVRTASEELACLLMDFG 245

Query: 358 RSNPDLKNKQGMTA 371
            ++   KN +G   
Sbjct: 246 -ADTQAKNAEGKRP 258

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 89.9 bits (224), Expect = 2e-20
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 28/190 (14%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSG----ISWSSGKSPLQVATKKRNLGVC-YL 245
             + D SP+  A   G+   L  ++     G    I  +   SPL  A    +L     L
Sbjct: 55  DAVSDWSPMHEAAIHGHQLSLRNLISQ---GWAVNIITADHVSPLHEACLGGHLSCVKIL 111

Query: 246 LE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFA 301
           L+    VN         +   P+  AC +G  +  V LL +    S+    +  + +H A
Sbjct: 112 LKHGAQVN-----GVTADWHTPLFNACVSGSWDC-VNLLLQ-HGASVQPESDLASPIHEA 164

Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
           A+ GH + V ++I   G N      ++       TPL+LA  +     V  LL  G ++ 
Sbjct: 165 ARRGHVECVNSLIAY-GGN------IDHKISHLGTPLYLACENQQRACVKKLLESG-ADV 216

Query: 362 DLKNKQGMTA 371
           + + K   + 
Sbjct: 217 N-QGKGQDSP 225

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 34/179 (18%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGIS---WSSGKSPLQVATKKRNLGVCYLLE 247
              +  +PL  A   G+ D +  +L+    G S    S   SP+  A ++ ++     L 
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQH---GASVQPESDLASPIHEAARRGHVECVNSLI 177

Query: 248 VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI---------L 298
             G +   K      P++LAC+N      V+ L           ++G ++         L
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRAC-VKKL----------LESGADVNQGKGQDSPL 226

Query: 299 HFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           H   +    ++   +++  G +          + +G  P+ L         ++ L R G
Sbjct: 227 HAVVRTASEELACLLMDF-GAD------TQAKNAEGKRPVELVPPESPLAQLF-LEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.5 bits (205), Expect = 5e-18
 Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 23/177 (12%)

Query: 201 LAIEMGNTDVLEYILR------SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSAL 254
           +     +      ++       S+        G  P               L  N     
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF-----PGIRLLSNPLMGD 55

Query: 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAII 314
             +  +  P+H A  +GH    +  L         +T +  + LH A   GH   VK ++
Sbjct: 56  AVSDWS--PMHEAAIHGHQLS-LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 315 EIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           +  G        VN +  D +TPL  A + G    V  LL++G ++   ++    + 
Sbjct: 113 KH-GAQ------VNGVTADWHTPLFNACVSGSWDCVNLLLQHG-ASVQPESD-LASP 160

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 46/251 (18%), Positives = 67/251 (26%), Gaps = 79/251 (31%)

Query: 41  DGSSLLHVAAKSGHGEITAKI-----AQYYPFLINKTNNQGDTPLHCAARAGKLNTATAL 95
           D  S LH A   GH     KI     AQ     +N       TPL  A  +G  +    L
Sbjct: 91  DHVSPLHEACLGGHLSC-VKILLKHGAQ-----VNGVTADWHTPLFNACVSGSWDCVNLL 144

Query: 96  VDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLS 155
           +           A V       +   + +HEA            +  G            
Sbjct: 145 LQHG--------ASVQ----PESDLASPIHEA------------ARRGH----------- 169

Query: 156 NPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKS---PLSLAIEMGNTDVLE 212
                             V     L++    +    + +      PL LA E      ++
Sbjct: 170 ------------------VECVNSLIAYGGNI----DHKISHLGTPLYLACENQQRACVK 207

Query: 213 YILRSLPSGIS---WSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACK 269
            +L    SG          SPL    +  +  +  LL   G     KN E   P+ L   
Sbjct: 208 KLLE---SGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP 264

Query: 270 NGHANVMVELL 280
                +    L
Sbjct: 265 ESP--LAQLFL 273

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 25/94 (26%)

Query: 40  TDGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTAT 93
           +D +S +H AA+ GH E           LI      +   +   TPL+ A    +     
Sbjct: 155 SDLASPIHEAARRGHVEC----VNS---LIAYGGNIDHKISHLGTPLYLACENQQRACVK 207

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
            L++        S A V+    +    ++ LH  
Sbjct: 208 KLLE--------SGADVN----QGKGQDSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.0 bits (118), Expect = 8e-07
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 37/127 (29%)

Query: 11  EAAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKI---- 61
           EAA RG+++  + L +   +I  +          +   + L++A ++       K     
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDHKI---------SHLGTPLYLACENQQRAC-VKKLLES 212

Query: 62  -AQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120
            A      +N+     D+PLH   R      A  L+DF         A       +NA G
Sbjct: 213 GAD-----VNQGKG-QDSPLHAVVRTASEELACLLMDF--------GADTQ---AKNAEG 255

Query: 121 NTALHEA 127
              +   
Sbjct: 256 KRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 28/121 (23%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
            +   +      L      +   D     ++   DGS         G   ++        
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDG----KQGGMDGSKPAGPRDFPGIRLLSN------- 50

Query: 67  FLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHE 126
            L+    +   +P+H AA  G   +   L+             V+   +  A   + LHE
Sbjct: 51  PLMGDAVS-DWSPMHEAAIHGHQLSLRNLIS--------QGWAVN---IITADHVSPLHE 98

Query: 127 A 127
           A
Sbjct: 99  A 99

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 92.5 bits (231), Expect = 1e-22
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 19/151 (12%)

Query: 226 SGKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELL 280
           +    +     +  +      +E    +N       ++E   P+  A  +G   V VE L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN-----HTDEEGFTPLMWAAAHGQIAV-VEFL 55

Query: 281 KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHL 340
            +       +     + L  A   G+ D+VK +++  G +      VN+ D +G TPL  
Sbjct: 56  LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVD------VNEYDWNGGTPLLY 108

Query: 341 AALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           A    H + V  LL  G ++P ++   G  +
Sbjct: 109 AVHGNHVKCVKMLLESG-ADPTIETDSGYNS 138

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 88.6 bits (221), Expect = 3e-21
 Identities = 31/188 (16%), Positives = 54/188 (28%), Gaps = 46/188 (24%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISW----SSGKSPLQVATKKRNLGVC-YLLE----V 248
            +      G    L   +               G +PL  A     + V  +LL+     
Sbjct: 6   SVHQLAAQGEMLYLATRIEQ---ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 249 NGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------L 298
                    K     + LAC  G+ ++ V++L           D G ++          L
Sbjct: 63  Q-----LLGKGRESALSLACSKGYTDI-VKML----------LDCGVDVNEYDWNGGTPL 106

Query: 299 HFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR 358
            +A    H   VK ++E  G +           + G   + LA   G+  V   +  +  
Sbjct: 107 LYAVHGNHVKCVKMLLES-GAD------PTIETDSGYNSMDLAVALGYRSVQQVIESHL- 158

Query: 359 SNPDLKNK 366
                  K
Sbjct: 159 LKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 24/93 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
              S L +A   G+ +I     +    L+      N+ +  G TPL  A     +     
Sbjct: 68  GRESALSLACSKGYTDI----VKM---LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L++        S A      +E   G  ++  A
Sbjct: 121 LLE--------SGADPT---IETDSGYNSMDLA 142

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.5 bits (117), Expect = 4e-07
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 24/88 (27%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATALVDFA 99
           +H  A  G     A         I      N T+ +G TPL  AA  G++     L+   
Sbjct: 7   VHQLAAQGEMLYLA-------TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-- 57

Query: 100 KHIPSTSQAPVDLLRMENAMGNTALHEA 127
                 + A      +      +AL  A
Sbjct: 58  ------NGADPQ---LLGKGRESALSLA 76

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.2 bits (116), Expect = 6e-07
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 24/93 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + L  AA  G   +         FL+             ++ L  A   G  +    
Sbjct: 35  EGFTPLMWAAAHGQIAVVE-------FLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L+D            V+     +  G T L  A
Sbjct: 88  LLD--------CGVDVN---EYDWNGGTPLLYA 109

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 13/63 (20%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + L  A    H +      +    L+          + G   +  A   G  +    
Sbjct: 101 NGGTPLLYAVHGNHVKC----VKM---LLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153

Query: 95  LVD 97
           +  
Sbjct: 154 IES 156

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 92.5 bits (231), Expect = 3e-22
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 25/154 (16%)

Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL------ 280
             + L+ A ++    V  +L+   Y   + + E   P+++A  N    +  + L      
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEI-AKALIDRGAD 64

Query: 281 ---KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTP 337
              +              +   +A   G  +++  +++    +      +NK +  G   
Sbjct: 65  INLQ---------NSISDSPYLYAGAQGRTEILAYMLKHATPD------LNKHNRYGGNA 109

Query: 338 LHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           L  AA  GH   V  LL  GR + D +N  G TA
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 88.3 bits (220), Expect = 9e-21
 Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 39/200 (19%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--------SSGKSPLQVATKKRNLGV 242
           K  E  + L  A +     V E +                  + G +PL +A    ++ +
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEIL-------QDTTYQVDEVDTEGNTPLNIAVHNNDIEI 54

Query: 243 C-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCN 296
              L++    +N      +N  +  P   A   G   + +  + +   P L   +  G N
Sbjct: 55  AKALIDRGADIN-----LQNSISDSPYLYAGAQGRTEI-LAYMLKHATPDLNKHNRYGGN 108

Query: 297 ILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL-----HGHSQVVY 351
            L  AA+ GH D VK ++E    +      ++  ++ G T L  A         +  +V 
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGRED------IDFQNDFGYTALIEAVGLREGNQLYQDIVK 162

Query: 352 ALLRYGRSNPDLKNKQGMTA 371
            L+  G ++  +K+  G TA
Sbjct: 163 LLMENG-ADQSIKDNSGRTA 181

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 72.5 bits (179), Expect = 4e-15
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 291 TDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
           T     +L  A +     + + + +           V+++D +GNTPL++A  +   ++ 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDT-TYQ------VDEVDTEGNTPLNIAVHNNDIEIA 55

Query: 351 YALLRYGRSNPDLKNKQGMTAYKMA 375
            AL+  G ++ +L+N    + Y  A
Sbjct: 56  KALIDRG-ADINLQNSISDSPYLYA 79

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.2 bits (173), Expect = 3e-14
 Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 22/177 (12%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW----SSGKSPLQVATKKRNLGVC-YL 245
            + E  +PL++A+   + ++ + ++     G       S   SP   A  +    +  Y+
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDR---GADINLQNSISDSPYLYAGAQGRTEILAYM 91

Query: 246 LEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFAA-- 302
           L+       K N+     +  A + GH +  V+LL E     +   ++ G   L  A   
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDN-VKLLLEDGREDIDFQNDFGYTALIEAVGL 150

Query: 303 ---KNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY 356
                 + D+VK ++E  G +       +  D  G T +  A   G++++   L +Y
Sbjct: 151 REGNQLYQDIVKLLMEN-GAD------QSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 24/94 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI-------NKTNNQGDTPLHCAARAGKLNTAT 93
              S    A   G  EI A       +++       NK N  G   L  AA  G ++   
Sbjct: 71  ISDSPYLYAGAQGRTEILA-------YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
            L+          +  +D    +N  G TAL EA
Sbjct: 124 LLL-------EDGREDID---FQNDFGYTALIEA 147

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 24/93 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +  +LL  A +    ++          L       ++ + +G+TPL+ A     +  A A
Sbjct: 5   EVGALLEAANQRDTKKVKE-------ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L+D          A ++L   +N++ ++    A
Sbjct: 58  LID--------RGADINL---QNSISDSPYLYA 79

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 14/55 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI-------NKTNNQGDTPLHCAARAGK 88
            G + L  AA+ GH +   K       L+       +  N+ G T L  A    +
Sbjct: 105 YGGNALIPAAEKGHIDN-VK------LLLEDGREDIDFQNDFGYTALIEAVGLRE 152

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 91.7 bits (229), Expect = 3e-22
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 30/156 (19%)

Query: 227 GKSPLQVATKKRNLG-VCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
               +    ++ N   V   L+       + +     P+H AC+ G + V VE+L     
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAV-VEML----- 58

Query: 286 PSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN 335
                   G  I          LH AA +GH D+V+ +++    +      +N ++E GN
Sbjct: 59  -----IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KAD------INAVNEHGN 106

Query: 336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            PLH A   G  QV   L+  G +   + NK G   
Sbjct: 107 VPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMP 141

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.2 bits (199), Expect = 4e-18
 Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 40/177 (22%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISW--SSGKSPLQVATKKRNLGVCYLL-----EVNG 250
            +      GN   +   L +  + ++     G SPL  A ++    V  +L      +N 
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN- 66

Query: 251 YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHF 300
                 N+    P+HLA  +GH ++ V+ L               +I          LH+
Sbjct: 67  ----VMNRGDDTPLHLAASHGHRDI-VQKL----------LQYKADINAVNEHGNVPLHY 111

Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           A   G   + + ++   G        V+  ++ G  P+  A       +     + G
Sbjct: 112 ACFWGQDQVAEDLVAN-GAL------VSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 291 TDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
           +    + +    + G+A  V+  ++    +      +N+ D+ G +PLH A   G S VV
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTEND------LNQGDDHGFSPLHWACREGRSAVV 55

Query: 351 YALLRYGRSNPDLKNKQGMTA 371
             L+  G +  ++ N+   T 
Sbjct: 56  EMLIMRG-ARINVMNRGDDTP 75

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.6 bits (130), Expect = 9e-09
 Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 51/178 (28%)

Query: 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW----SSGKSPLQVATKKRNLGVCYL 245
             +    SPL  A   G + V+E ++     G           +PL +A    +  +   
Sbjct: 34  QGDDHGFSPLHWACREGRSAVVEMLIMR---GARINVMNRGDDTPLHLAASHGHRDIVQK 90

Query: 246 L-----EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI--- 297
           L     ++N   A+ ++     P+H AC  G   V  E L            NG  +   
Sbjct: 91  LLQYKADIN---AVNEHGNV--PLHYACFWGQDQV-AEDL----------VANGALVSIC 134

Query: 298 -------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348
                  +  A       + +   ++ G N      +N+       P       G ++
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKM-GQN------LNR------IPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 51.3 bits (124), Expect = 6e-08
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 24/93 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
              + LH+AA  GH +I     Q    L+      N  N  G+ PLH A   G+   A  
Sbjct: 71  GDDTPLHLAASHGHRDI----VQK---LLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           LV         + A V    + N  G   + +A
Sbjct: 124 LVA--------NGALVS---ICNKYGEMPVDKA 145

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.2 bits (116), Expect = 6e-07
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 11/87 (12%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
           +    +    + G+              +N+ ++ G +PLH A R G+      L+    
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM--- 60

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEA 127
                  A ++   + N   +T LH A
Sbjct: 61  -----RGARIN---VMNRGDDTPLHLA 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 44.7 bits (107), Expect = 9e-06
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 13/63 (20%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G+  LH A   G  ++    A+    L+      +  N  G+ P+  A    +      
Sbjct: 104 HGNVPLHYACFWGQDQV----AED---LVANGALVSICNKYGEMPVDKAKAPLRELLRER 156

Query: 95  LVD 97
              
Sbjct: 157 AEK 159

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.5 bits (236), Expect = 4e-22
 Identities = 61/337 (18%), Positives = 101/337 (29%), Gaps = 81/337 (24%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
                  +    G      +             + G      A  +G       L+    
Sbjct: 7   KQKRNEQLKRWIGSETD-LEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLL---- 60

Query: 101 HIPSTSQ-APVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTL 159
                 + A ++     N  G TALH+A             I  +               
Sbjct: 61  -----ERGADIN---YANVDGLTALHQA------------CIDDN--------------- 85

Query: 160 AIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLP 219
                         V +  FLV     ++   + E   PL  A   G  D+ EY++    
Sbjct: 86  --------------VDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQ-- 128

Query: 220 SG----ISWSSGKSPLQVATKKRNLGVC-YLLEVNGYSALKKNKETLYPIHLACKNGHAN 274
            G       S G +PL +A ++    +    +   G      + E         +    +
Sbjct: 129 -GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG-----VDIEA--ARKEEERIMLRD 180

Query: 275 VMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG 334
              + L       +    +G   LH AA  G+ +++K +I+    +      VN  D DG
Sbjct: 181 A-RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYD------VNIKDYDG 232

Query: 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            TPLH AA  G  +    L+     + +  NK G TA
Sbjct: 233 WTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTA 268

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 81.4 bits (202), Expect = 1e-17
 Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 38/204 (18%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLG-VCYLLE-- 247
            + + K    L   +G+   LE  +             +    A    +   V  LLE  
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG 63

Query: 248 --VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-------- 297
             +N       N + L  +H AC + + ++ V+ L           +NG NI        
Sbjct: 64  ADIN-----YANVDGLTALHQACIDDNVDM-VKFL----------VENGANINQPDNEGW 107

Query: 298 --LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
             LH AA  G+ D+ + +I   G +      V  ++ +G+TPL +A      +++   + 
Sbjct: 108 IPLHAAASCGYLDIAEYLISQ-GAH------VGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 356 YGRSNPDLKNKQGMTAYKMALREY 379
               + +   K+         R++
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQW 184

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.9 bits (180), Expect = 1e-14
 Identities = 26/187 (13%), Positives = 63/187 (33%), Gaps = 33/187 (17%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNG 250
            N E  +PL +A E    ++L+  +     G+     ++  +   +         L    
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNR--QGVD---IEAARKEEERIMLRDARQWLNSGH 189

Query: 251 YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHF 300
            + ++  K     +H+A   G+  V ++LL               ++          LH 
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEV-LKLL----------IQARYDVNIKDYDGWTPLHA 238

Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
           AA  G  +  + ++E    +      +  +++ G T   +A       +     +    +
Sbjct: 239 AAHWGKEEACRILVEN-LCD------MEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291

Query: 361 PDLKNKQ 367
            + + K+
Sbjct: 292 SEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 24/93 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + LHVAA  G+ E+          LI      N  +  G TPLH AA  GK      
Sbjct: 198 SGGTALHVAAAKGYTEVLK-------LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           LV+        +   ++     N +G TA   A
Sbjct: 251 LVE--------NLCDME---AVNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 27/85 (31%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           AA +G  +    L     D+  +D          DG + LH AA  G  E          
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKD---------YDGWTPLHAAAHWGKEEACR------- 249

Query: 67  FLI------NKTNNQGDTPLHCAAR 85
            L+         N  G T    A  
Sbjct: 250 ILVENLCDMEAVNKVGQTAFDVADE 274

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 92.5 bits (231), Expect = 9e-22
 Identities = 45/271 (16%), Positives = 81/271 (29%), Gaps = 73/271 (26%)

Query: 120 GNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYF 179
           G T L  A            S +G  L   +S    +        I              
Sbjct: 10  GFTPLMIA------------SCSGGGLETGNSEEEED----APAVIS------------D 41

Query: 180 LVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--------SSGKSPL 231
            +     L    +   ++ L LA     +D  + +       +          + G++PL
Sbjct: 42  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL-------LEASADANIQDNMGRTPL 94

Query: 232 QVATKKRNLGVC-YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFV 290
             A      GV   L+         +  +   P+ LA +      M+E L          
Sbjct: 95  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG-MLEDL---------- 143

Query: 291 TDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHL 340
            ++  ++          LH+AA   + D    +++  G N       +  +    TPL L
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GAN------KDMQNNREETPLFL 196

Query: 341 AALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           AA  G  +    LL +  +N D+ +      
Sbjct: 197 AAREGSYETAKVLLDHF-ANRDITDHMDRLP 226

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 86.4 bits (215), Expect = 1e-19
 Identities = 59/340 (17%), Positives = 103/340 (30%), Gaps = 125/340 (36%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYP------FLI-------NKTNNQGDTPLHCAARAG 87
           DG + L +A+ SG G  T    +           I       N+T+  G+T LH AAR  
Sbjct: 9   DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68

Query: 88  KLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLT 147
           + + A  L++        + A  +   +++ MG T LH A              A  +  
Sbjct: 69  RSDAAKRLLE--------ASADAN---IQDNMGRTPLHAA------------VSAD-AQG 104

Query: 148 MAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGN 207
           +     + N   A D       +++                  +  +  +PL LA  +  
Sbjct: 105 VF-QILIRNR--ATD-------LDA------------------RMHDGTTPLILAARLAV 136

Query: 208 TDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLA 267
             +LE ++         +S       A            +VN       +      +H A
Sbjct: 137 EGMLEDLI---------NSH------A------------DVN-----AVDDLGKSALHWA 164

Query: 268 CKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIP 317
               + +    +L            NG N           L  AA+ G  +  K +++  
Sbjct: 165 AAVNNVDA-AVVL----------LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH- 212

Query: 318 GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
             N       +  D     P  +A    H  +V  L    
Sbjct: 213 FAN------RDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.0 bits (196), Expect = 5e-17
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 22/129 (17%)

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSL--FVTDNGCNI-----------LHFAA 302
            +  T  P+ +A  +G         +E   P++       G ++           LH AA
Sbjct: 8   PDGFT--PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA 65

Query: 303 KNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD 362
           +   +D  K ++E    +       N  D  G TPLH A       V   L+R   ++ D
Sbjct: 66  RYSRSDAAKRLLEA-SAD------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118

Query: 363 LKNKQGMTA 371
            +   G T 
Sbjct: 119 ARMHDGTTP 127

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 291 TDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMD-------EVVNKMDEDGNTPLHLAAL 343
             +G   L  A+ +G         E       +         + N+ D  G T LHLAA 
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 344 HGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           +  S     LL    ++ ++++  G T 
Sbjct: 67  YSRSDAAKRLLEAS-ADANIQDNMGRTP 93

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 13/58 (22%)

Query: 327 VNKMDEDGNTPLHLAALHG-------------HSQVVYALLRYGRSNPDLKNKQGMTA 371
           VN    DG TPL +A+  G                V+   +  G S  +  ++ G TA
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 90.5 bits (226), Expect = 2e-21
 Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 49/217 (22%)

Query: 176 IAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--------SSG 227
           +    +     L    +   ++ L LA     +D  + +       +          + G
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL-------LEASADANIQDNMG 58

Query: 228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLY---PIHLACKNGHANVMVELLKEWR 284
           ++PL  A      GV  +L  N   A   +        P+ LA +     + +E L    
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGM-LEDL---- 111

Query: 285 CPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG 334
                  ++  ++          LH+AA   + D    +++  G N       +  +   
Sbjct: 112 ------INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GAN------KDMQNNRE 158

Query: 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            TPL LAA  G  +    LL +  +N D+ +      
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLP 194

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.8 bits (193), Expect = 8e-17
 Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 40/184 (21%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--SSGKSPLQVATKKRNLGVCYLL-- 246
           ++   ++PL  A+      V + ++R+  + +      G +PL +A +    G+   L  
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113

Query: 247 ---EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI------ 297
              +VN       +      +H A    + +    +L            NG N       
Sbjct: 114 SHADVN-----AVDDLGKSALHWAAAVNNVDA-AVVL----------LKNGANKDMQNNR 157

Query: 298 ----LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
               L  AA+ G  +  K +++    N       +  D     P  +A    H  +V  L
Sbjct: 158 EETPLFLAAREGSYETAKVLLDH-FAN------RDITDHMDRLPRDIAQERMHHDIVRLL 210

Query: 354 LRYG 357
             Y 
Sbjct: 211 DEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.0 bits (126), Expect = 6e-08
 Identities = 43/258 (16%), Positives = 75/258 (29%), Gaps = 89/258 (34%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + LH+AA+    +  AK       L+      N  +N G TPLH A  A        
Sbjct: 24  TGETALHLAARYSRSDA-AK------RLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 76

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFL 154
           L+             +D        G T L  A  +                        
Sbjct: 77  LI-------RNRATDLD---ARMHDGTTPLILAARL------------------------ 102

Query: 155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK---SPLSLAIEMGNTDVL 211
                                +   L++    +    N  D    S L  A  + N D  
Sbjct: 103 ----------------AVE-GMLEDLINSHADV----NAVDDLGKSALHWAAAVNNVDAA 141

Query: 212 EYILRSLPSGISW----SSGKSPLQVATKKRNLGVCYLL-----EVNGYSALKKNKETLY 262
             +L+   +G +     +  ++PL +A ++ +     +L       +       +     
Sbjct: 142 VVLLK---NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD-----ITDHMDRL 193

Query: 263 PIHLACKNGHANVMVELL 280
           P  +A +  H ++ V LL
Sbjct: 194 PRDIAQERMHHDI-VRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 35/126 (27%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKI----- 61
           AA     D    L     D   QD           G + LH A  +    +  +I     
Sbjct: 32  AARYSRSDAAKRLLEASADANIQD---------NMGRTPLHAAVSADAQGV-FQILIRNR 81

Query: 62  AQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGN 121
           A      ++   + G TPL  AAR         L++          A V+     + +G 
Sbjct: 82  ATD----LDARMHDGTTPLILAARLAVEGMLEDLIN---S-----HADVN---AVDDLGK 126

Query: 122 TALHEA 127
           +ALH A
Sbjct: 127 SALHWA 132

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 9e-06
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 31/91 (34%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
              + L +AA+ G  E  AK       L+      + T++    P   A      +    
Sbjct: 157 REETPLFLAAREGSYET-AK------VLLDHFANRDITDHMDRLPRDIAQERMHHDI--- 206

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALH 125
                          V LL   N + +  LH
Sbjct: 207 ---------------VRLLDEYNLVRSPQLH 222

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 89.0 bits (222), Expect = 2e-21
 Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 30/156 (19%)

Query: 227 GKSPLQVATKKRNLGVC-YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
               L  A K  ++     L  V   +          P+H A      +V VE L     
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV-VEYL----- 61

Query: 286 PSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN 335
                  +G ++          LH A   GH ++ + +++  G        VN  D    
Sbjct: 62  -----LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAV------VNVADLWKF 109

Query: 336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           TPLH AA  G  ++   LL++G ++P  KN+ G T 
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTP 144

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.0 bits (183), Expect = 5e-16
 Identities = 42/191 (21%), Positives = 66/191 (34%), Gaps = 55/191 (28%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW---------SSGKSPLQVATKKRNLG 241
            N E    L  A + G+ + ++ +        +              +PL  A     + 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKL-------CTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56

Query: 242 VCYLL-----EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCN 296
           V   L     +V+      K+K  L P+H AC  GH  V  ELL            +G  
Sbjct: 57  VVEYLLQHGADVH-----AKDKGGLVPLHNACSYGHYEV-AELL----------VKHGAV 100

Query: 297 I----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +          LH AA  G  ++ K +++  G +        K + DGNTPL L    G 
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GAD------PTKKNRDGNTPLDLVK-DGD 152

Query: 347 SQVVYALLRYG 357
           + +   L    
Sbjct: 153 TDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 70.1 bits (173), Expect = 1e-14
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
                 L  AAK G  + VK +  +   N         ++   +TPLH AA +    VV 
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVN------CRDIEGRQSTPLHFAAGYNRVSVVE 59

Query: 352 ALLRYGRSNPDLKNKQGMTA 371
            LL++G ++   K+K G+  
Sbjct: 60  YLLQHG-ADVHAKDKGGLVP 78

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.8 bits (115), Expect = 8e-07
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 13/88 (14%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
           +    L  AAK+G  E   K+             +  TPLH AA   +++    L+    
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL---- 62

Query: 101 HIPSTSQ-APVDLLRMENAMGNTALHEA 127
                   A V     ++  G   LH A
Sbjct: 63  -----QHGADVH---AKDKGGLVPLHNA 82

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 24/94 (25%), Positives = 29/94 (30%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G   LH A   GH E+          L+      N  +    TPLH AA  GK      
Sbjct: 74  GGLVPLHNACSYGHYEVAE-------LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+            A       +N  GNT L   
Sbjct: 127 LL---------QHGADPT---KKNRDGNTPLDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 8/41 (19%), Positives = 13/41 (31%)

Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           + + +  L  AA  G  + V  L      N      +  T 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP 45

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 39.3 bits (93), Expect = 6e-04
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 13/51 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAAR 85
              + LH AA  G  EI  K       L+       K N  G+TPL     
Sbjct: 107 WKFTPLHEAAAKGKYEI-CK------LLLQHGADPTKKNRDGNTPLDLVKD 150

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 91.0 bits (226), Expect = 5e-21
 Identities = 41/237 (17%), Positives = 71/237 (29%), Gaps = 57/237 (24%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGIS---------WSSGKSPLQVATKKRNLG 241
             + D+  +  A+   N   LE +L  L                +GK+ L  A    + G
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68

Query: 242 ----VCYLLEVNGYSALKK-------NKETLY---PIHLACKNGHANVMVELL------- 280
               +  LL+V   +   K                 +H+A +  +  + V LL       
Sbjct: 69  QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL-VTLLVENGADV 127

Query: 281 -------KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDED 333
                     +         G   L  AA      +VK +++    N      ++  D  
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ----NSWQPADISARDSV 183

Query: 334 GNTPLHLAALHGHSQVVY---------------ALLRYGRSNPDLKNKQGMTAYKMA 375
           GNT LH       + V                 A L       ++ N++G+T   +A
Sbjct: 184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 84.1 bits (208), Expect = 1e-18
 Identities = 47/315 (14%), Positives = 81/315 (25%), Gaps = 74/315 (23%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLIN-------KTNNQGDTPLHCA---ARAGKLNTATAL 95
           +  A    + +    +  +             K    G T L  A      G+ +T   L
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 96  VDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLS 155
           +D A+   S  Q            G TALH A+     + +                 + 
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RNMTLVT-------------LLVE 122

Query: 156 NPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL 215
           N     D     N                           + PLSLA       +++++L
Sbjct: 123 N---GADVQAAANG-----------DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168

Query: 216 RSLPSGISW----SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG 271
           ++           S G + L    +  +  V            K        I +     
Sbjct: 169 QNSWQPADISARDSVGNTVLHALVEVADNTV---------DNTKFVTSMYNEILILGAKL 219

Query: 272 HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD 331
           H  + +E +             G   L  AA +G   ++  I++               +
Sbjct: 220 HPTLKLEEIT---------NRKGLTPLALAASSGKIGVLAYILQ--------------RE 256

Query: 332 EDGNTPLHLAALHGH 346
                  H AA H H
Sbjct: 257 IHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 15/132 (11%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTD-------NGCNILHFA---AKNGHADMVKA 312
            I  A    +   +  LL   +     +TD        G   L  A     NG  D +  
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 313 IIEIPGTNMTMDEVVN----KMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQG 368
           ++++     ++ + VN         G T LH+A    +  +V  L+  G ++        
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG-ADVQAAANGD 134

Query: 369 MTAYKMALREYY 380
                     +Y
Sbjct: 135 FFKKTKGRPGFY 146

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 47/323 (14%), Positives = 86/323 (26%), Gaps = 91/323 (28%)

Query: 10  FEAAIRGNIDDF----LFSDIPKQDLHHIFEKVLTDGSSLLHVA---AKSGHGEI----- 57
           F+A  + N  +      F    K+ L     K    G + L  A     +G  +      
Sbjct: 18  FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLL 77

Query: 58  -TAKIAQYYPFLIN----KTNNQGDTPLHCAARAGKLNTATALVDF-----AKHIPSTSQ 107
             A+        +N     +  +G T LH A     +   T LV+      A    +   
Sbjct: 78  DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA--NGDF 135

Query: 108 APVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKT 167
                 R     G   L  A     ++ + +             + L N     D     
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACT-NQLAIVK-------------FLLQNSWQPAD----- 176

Query: 168 NIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSG 227
             I++                  ++    + L   +E+ +  V                 
Sbjct: 177 --ISA------------------RDSVGNTVLHALVEVADNTV----------------D 200

Query: 228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL--KEWRC 285
            +    +     L +   L          N++ L P+ LA  +G   V +  +  +E   
Sbjct: 201 NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV-LAYILQRE--- 256

Query: 286 PSLFVTDNGCNILHFAAKNGHAD 308
                  +     H AA + H  
Sbjct: 257 ------IHEPECRHAAAHHHHHH 273

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 88.3 bits (219), Expect = 3e-20
 Identities = 41/229 (17%), Positives = 72/229 (31%), Gaps = 50/229 (21%)

Query: 195 DKSPLSLAIEMGNTDVLEYILRSLPSGISW---------SSGKSPLQVATKKRNLG---- 241
           D+  L   +  G  + L  +L  L     +         S+GK+ L  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 242 VCYLLE----------VNGYSALKKNKETLYPIHLACKNGHANVMVELL------KEWRC 285
           +  LL+          +       +  +    +H+A +       V+LL         R 
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQC-VKLLVENGADVHLRA 120

Query: 286 PSLF-------VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDE------------V 326
              F           G   L  AA     D+V  ++E P    +++             V
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
           +   +   N+ L +    G  Q+   L        ++ N QG+T  K+A
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTV-QLEEISNHQGLTPLKLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 80.2 bits (198), Expect = 2e-17
 Identities = 47/309 (15%), Positives = 80/309 (25%), Gaps = 79/309 (25%)

Query: 78  TPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVW 137
             L      G     T L+++ +     S+   D    E + G T L +A+  L      
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLR---WNSKYLTDSAYTEGSTGKTCLMKAVLNLQD---- 56

Query: 138 RTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK- 196
                                           I  L+ I     +  P ++     E   
Sbjct: 57  ---------------------------GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQ 89

Query: 197 --SPLSLAIEMGNTDVLEYILR--------------SLPSGISWSSGKSPLQVATKKRNL 240
             S L +AIE  +   ++ ++                   G  +  G+ PL +A   +  
Sbjct: 90  GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149

Query: 241 GVC-YLLEVNGYSAL--KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI 297
            V  YLLE     A     +      +H                              + 
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD------------------NSPENSA 191

Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           L     +G   M   +                 +  G TPL LAA  G  ++   +L+  
Sbjct: 192 LVIHMYDGLLQMGARLCPT-VQL------EEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 358 RSNPDLKNK 366
            S     + 
Sbjct: 245 FSGAAAHHH 253

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 15/135 (11%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTD-------NGCNILHFAA---KNGHADMVKA 312
            +      G    +  LL+  R  S ++TD        G   L  A    ++G    +  
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 313 IIEIP----GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQG 368
           +++I          ++         G++ LH+A      Q V  L+  G ++  L+    
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-ADVHLRACGR 123

Query: 369 MTAYKMALREYYMQT 383
                     Y+ + 
Sbjct: 124 FFQKHQGTCFYFGEL 138

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 46/188 (24%)

Query: 41  DGSSLLHVAAKSGHGEIT-------AKI-----AQYYPFLINKTNNQGDTPLHCAARAGK 88
            G S LH+A +    +         A +      +++          G+ PL  AA   +
Sbjct: 89  QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148

Query: 89  LNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTM 148
            +  T L++          A ++     +++GNT LH        V +   S   S+L +
Sbjct: 149 WDVVTYLLENP-----HQPASLE---ATDSLGNTVLHAL------VMIADNSPENSALVI 194

Query: 149 AHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNT 208
                               + + L+ +   L           N +  +PL LA + G  
Sbjct: 195 H-------------------MYDGLLQMGARLCPTVQLEE-ISNHQGLTPLKLAAKEGKI 234

Query: 209 DVLEYILR 216
           ++  +IL+
Sbjct: 235 EIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 38/291 (13%), Positives = 66/291 (22%), Gaps = 77/291 (26%)

Query: 10  FEAAIRGNIDDF-----LFSDIPKQDLHHIFEKVLTDGSSLLHVAA---KSGHGEITAKI 61
           F    RG  ++            K      + +  + G + L  A    + G       +
Sbjct: 7   FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEG-STGKTCLMKAVLNLQDGVNACIMPL 65

Query: 62  AQYYPFL----------INKTNNQGDTPLHCAARAGKLNTATALVDF--AKHIPSTSQAP 109
            Q                     QG + LH A     L     LV+     H+ +  +  
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 110 VDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNI 169
                     G   L  A     + +V               Y L NP            
Sbjct: 126 QKHQGTCFYFGELPLSLAA-CTKQWDVVT-------------YLLENPHQPAS------- 164

Query: 170 INSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKS 229
           + +                   +    + L   + + +                     S
Sbjct: 165 LEA------------------TDSLGNTVLHALVMIADNS----------------PENS 190

Query: 230 PLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL 280
            L +      L +   L          N + L P+ LA K G   +    +
Sbjct: 191 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI-FRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 16/100 (16%)

Query: 12  AAIRGNID--DFLFS------DIPKQD------LHH-IFEKVLTDGSSLLHVAAKSGHGE 56
           AA     D   +L         +   D      LH  +     +  +S L +    G  +
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202

Query: 57  ITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
           + A++      L   +N+QG TPL  AA+ GK+     ++
Sbjct: 203 MGARLCPT-VQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 84.0 bits (209), Expect = 4e-20
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 31/126 (24%)

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNG 305
           K+  T  P+H A KNGHA   V+ L             G ++          LH AAKNG
Sbjct: 7   KDGNT--PLHNAAKNGHAEE-VKKL----------LSKGADVNARSKDGNTPLHLAAKNG 53

Query: 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKN 365
           HA++VK ++   G +      VN   +DGNTP HLA  +GH ++V  L   G ++ + ++
Sbjct: 54  HAEIVKLLLAK-GAD------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARS 105

Query: 366 KQGMTA 371
                 
Sbjct: 106 WGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.3 bits (176), Expect = 1e-15
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 8/81 (9%)

Query: 291 TDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
           + +G   LH AAKNGHA+ VK ++   G +      VN   +DGNTPLHLAA +GH+++V
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSK-GAD------VNARSKDGNTPLHLAAKNGHAEIV 58

Query: 351 YALLRYGRSNPDLKNKQGMTA 371
             LL  G ++ + ++K G T 
Sbjct: 59  KLLLAKG-ADVNARSKDGNTP 78

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.2 bits (150), Expect = 5e-12
 Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 30/124 (24%)

Query: 227 GKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELL- 280
           G +PL  A K  +      LL     VN   A  K+  T  P+HLA KNGHA + V+LL 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNT--PLHLAAKNGHAEI-VKLLL 62

Query: 281 -----KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN 335
                   R      + +G    H A KNGH ++VK +    G +      VN      +
Sbjct: 63  AKGADVNAR------SKDGNTPEHLAKKNGHHEIVKLLDAK-GAD------VNARSWGSS 109

Query: 336 TPLH 339
              H
Sbjct: 110 HHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           DG++ LH AAK+GH E      +    L+      N  +  G+TPLH AA+ G       
Sbjct: 8   DGNTPLHNAAKNGHAEE----VKK---LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+         ++ A V+     +  GNT  H A
Sbjct: 61  LL---------AKGADVN---ARSKDGNTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 26/92 (28%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           DG++ LH+AAK+GH EI     +    L+      N  +  G+TP H A + G       
Sbjct: 41  DGNTPLHLAAKNGHAEI----VKL---LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKL 93

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALH 125
           L          ++ A V+     +   +   H
Sbjct: 94  LD---------AKGADVN---ARSWGSSHHHH 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 84.0 bits (209), Expect = 5e-20
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 29/119 (24%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKA 312
               A KNG  +  V+               G ++          LH+AA  G  ++++ 
Sbjct: 10  EFMWALKNGDLDE-VKDYVA----------KGEDVNRTLEGGRKPLHYAADCGQLEILEF 58

Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           ++   G +      +N  D+   TPL  A   GH   V  LL  G ++  +K   G+TA
Sbjct: 59  LLLK-GAD------INAPDKHHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTA 109

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.9 bits (188), Expect = 4e-17
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
                  +A KNG  D VK  +   G +      VN+  E G  PLH AA  G  +++  
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAK-GED------VNRTLEGGRKPLHYAADCGQLEILEF 58

Query: 353 LLRYGRSNPDLKNKQGMTA 371
           LL  G ++ +  +K  +T 
Sbjct: 59  LLLKG-ADINAPDKHHITP 76

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.1 bits (186), Expect = 7e-17
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 38/141 (26%)

Query: 225 SSGKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVEL 279
           S        A K  +L      +     VN     +  +    P+H A   G   + +E 
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVN-----RTLEGGRKPLHYAADCGQLEI-LEF 58

Query: 280 LKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK 329
           L             G +I          L  A   GH   VK ++   G +         
Sbjct: 59  L----------LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GAD------KTV 101

Query: 330 MDEDGNTPLHLAALHGHSQVV 350
              DG T            ++
Sbjct: 102 KGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
                   A K+G  +      +     +      N+T   G  PLH AA  G+L     
Sbjct: 6   MCDKEFMWALKNGDLDE----VKD---YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF 58

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+          + A ++     +    T L  A
Sbjct: 59  LL---------LKGADIN---APDKHHITPLLSA 80

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G   LH AA  G  EI     ++   L+      N  +    TPL  A   G ++    
Sbjct: 39  GGRKPLHYAADCGQLEI----LEF---LLLKGADINAPDKHHITPLLSAVYEGHVSCVKL 91

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+         S+ A      ++   G TA    
Sbjct: 92  LL---------SKGADKT---VKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.7 bits (107), Expect = 3e-06
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 30/129 (23%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSG----ISWSSGKSPLQVATKKRNLGVC-YLLE----V 248
               A++ G+ D ++  +     G     +   G+ PL  A     L +  +LL     +
Sbjct: 10  EFMWALKNGDLDEVKDYVAK---GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 249 NGYSALKKNKETLYPIHLACKNGHANVMVELL------KEWRCPSLFVTDNGCNILHFAA 302
           N   A  K+  T  P+  A   GH +  V+LL      K  +        +G        
Sbjct: 67  N---APDKHHIT--PLLSAVYEGHVSC-VKLLLSKGADKTVK------GPDGLTAFEATD 114

Query: 303 KNGHADMVK 311
                 +++
Sbjct: 115 NQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 10/55 (18%), Gaps = 13/55 (23%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKL 89
              + L  A   GH        +    L+            G T           
Sbjct: 72  HHITPLLSAVYEGHVSC----VKL---LLSKGADKTVKGPDGLTAFEATDNQAIK 119

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 88.4 bits (220), Expect = 5e-20
 Identities = 26/188 (13%), Positives = 58/188 (30%), Gaps = 22/188 (11%)

Query: 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVC-YLLE- 247
             ++   S    AI   N  ++  +L +  +  +    + PL  A    +  +   LL  
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLL-NAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84

Query: 248 ---VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-LHFAAK 303
               +          T   ++ A  +G+    V+L  +     +F    G     + A  
Sbjct: 85  GLDDS---QFDDKGNT--ALYYAVDSGNMQT-VKLFVKKNWRLMFYGKTGWKTSFYHAVM 138

Query: 304 NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDL 363
                +V   +     +               + +H+   +GH  ++  LL Y  ++ + 
Sbjct: 139 LNDVSIVSYFLSE-IPS-------TFDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNT 189

Query: 364 KNKQGMTA 371
            N      
Sbjct: 190 NNSLLFIP 197

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 35/318 (11%), Positives = 85/318 (26%), Gaps = 99/318 (31%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAM-GNTALHEA 127
             K +  G +  + A     +     L++        + A        N +     LH+A
Sbjct: 24  TFKADVHGHSASYYAIADNNVRLVCTLLN--------AGALK------NLLENEFPLHQA 69

Query: 128 LFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKL 187
             +     + +               L +    +DD+   +                   
Sbjct: 70  ATL-EDTKIVK-------------ILLFS---GLDDSQFDD------------------- 93

Query: 188 SCCKNIEDKSPLSLAIEMGNTDVLEYILR--SLPSGISWSSGKSPLQVATKKRNLGVC-Y 244
                 +  + L  A++ GN   ++  ++          +  K+    A    ++ +  Y
Sbjct: 94  ------KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 245 LLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI------- 297
            L     +       +   IH+  KNGH ++ + LL           D   +        
Sbjct: 148 FLSEIPSTFDLAILLS--CIHITIKNGHVDM-MILL----------LDYMTSTNTNNSLL 194

Query: 298 ----LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
               +  A  N   +M++A+ +               D +  +      L   +++   +
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFK--------------YDINIYSANLENVLLDDAEIAKMI 240

Query: 354 LRYGRSNPDLKNKQGMTA 371
           +          +      
Sbjct: 241 IEKH-VEYKSDSYTKDLD 257

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.9 bits (211), Expect = 9e-19
 Identities = 50/337 (14%), Positives = 84/337 (24%), Gaps = 93/337 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINK---TNNQ-GDTPLHCAARAGKLNTATALV 96
            G S  + A    +  +          L+N     N    + PLH AA          L+
Sbjct: 30  HGHSASYYAIADNNVRL-VC------TLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82

Query: 97  DFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSN 156
                    S          +  GNTAL+ A              +G+            
Sbjct: 83  F--------SGLDDS---QFDDKGNTALYYA------------VDSGN------------ 107

Query: 157 PTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR 216
                            +      V  + +L        K+    A+ + +  ++ Y L 
Sbjct: 108 -----------------MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS 150

Query: 217 SLPSGISWSSGKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNG 271
            +PS    +   S + +  K  ++ +   LL+     N              I LA  N 
Sbjct: 151 EIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN---TNNSLLFI-PDIKLAIDNK 206

Query: 272 HANVMVELLKEWRCPSLFVTDNGCNI---LHFAAKNGHADMVKAIIEIPGTNMTMDEVVN 328
              + ++ L               NI            A++ K IIE             
Sbjct: 207 DIEM-LQAL----------FKYDINIYSANLENVLLDDAEIAKMIIEK-HVE------YK 248

Query: 329 KMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKN 365
                 +  +               LR    N   KN
Sbjct: 249 SDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 32/98 (32%)

Query: 40  TDGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTP-LHCAARAGKLNTA 92
               S +H+  K+GH ++          L+      N  N+    P +  A     +   
Sbjct: 159 AILLSCIHITIKNGHVDMMI-------LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEML 211

Query: 93  TALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFM 130
            AL                     +    +A  E + +
Sbjct: 212 QALFK------------------YDINIYSANLENVLL 231

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 84.4 bits (210), Expect = 6e-20
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 31/133 (23%)

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNG 305
              ET   +H+A   G     VE L +          NG +           LH A  +G
Sbjct: 8   HRGET--LLHIASIKGDIPS-VEYLLQ----------NGSDPNVKDHAGWTPLHEACNHG 54

Query: 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKN 365
           H  +V+ +++           VN      ++PLH AA +GH  +V  LL YG ++ +  N
Sbjct: 55  HLKVVELLLQH-KAL------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVN 106

Query: 366 KQGMTAYKMALRE 378
             G+        E
Sbjct: 107 IFGLRPVDYTDDE 119

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.1 bits (191), Expect = 3e-17
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 38/149 (25%)

Query: 227 GKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
           G++ L +A+ K ++    YLL+     N      K+     P+H AC +GH  V VELL 
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPN-----VKDHAGWTPLHEACNHGHLKV-VELL- 62

Query: 282 EWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD 331
                      +   +          LH AAKNGH D+VK ++   G +       N ++
Sbjct: 63  ---------LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GAS------RNAVN 106

Query: 332 EDGNTPLHLAALHGHSQVVYALLRYGRSN 360
             G  P+          ++    +   S+
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.1 bits (121), Expect = 7e-08
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + LH A   GH ++          L+      N T  Q D+PLH AA+ G ++    
Sbjct: 42  AGWTPLHEACNHGHLKVVE-------LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+         S  A  +     N  G   +   
Sbjct: 95  LL---------SYGASRNA---VNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.1 bits (121), Expect = 7e-08
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
               +  G T LH+A++ G    V  LL+ G S+P++K+  G T 
Sbjct: 4   PFT-NHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTP 46

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 24/93 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G +LLH+A+  G         +Y   L+      N  ++ G TPLH A   G L     
Sbjct: 9   RGETLLHIASIKGDIP----SVEY---LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L+          +A V+         ++ LH+A
Sbjct: 62  LLQ--------HKALVN---TTGYQNDSPLHDA 83

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 44.3 bits (106), Expect = 8e-06
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 13/61 (21%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
              S LH AAK+GH +I  K       L+      N  N  G  P+         +    
Sbjct: 75  QNDSPLHDAAKNGHVDI-VK------LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127

Query: 95  L 95
            
Sbjct: 128 P 128

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 85.6 bits (213), Expect = 6e-20
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 28/133 (21%)

Query: 247 EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-------LH 299
           EVN     +   E      +  K+GH+                      ++         
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPS-WVPSSY----------IAADVVSEYETPWW 49

Query: 300 FAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS 359
            AA+      +  ++E    +      V+ +DE+G T L   A  G  + V  L   G +
Sbjct: 50  TAARKADEQALSQLLE--DRD------VDAVDENGRTALLFVAGLGSDKCVRLLAEAG-A 100

Query: 360 NPDLKN-KQGMTA 371
           + D ++ + G+TA
Sbjct: 101 DLDHRDMRGGLTA 113

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 42/184 (22%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW-SSGKSPLQVATKKRNLGVCYLL--- 246
              E      +  + G++        S        S  ++P   A +K +      L   
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVP---SSYIAADVVSEYETPWWTAARKADEQALSQLLED 66

Query: 247 -EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-------- 297
            +V+   A+ +N  T   +      G     V LL E           G ++        
Sbjct: 67  RDVD---AVDENGRT--ALLFVAGLGSDKC-VRLLAE----------AGADLDHRDMRGG 110

Query: 298 ---LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
              LH AA     ++V+A++E+ G +      +   DE G T L LA     +      +
Sbjct: 111 LTALHMAAGYVRPEVVEALVEL-GAD------IEVEDERGLTALELAREILKTTPKGNPM 163

Query: 355 RYGR 358
           ++GR
Sbjct: 164 QFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 29/125 (23%)

Query: 8   AYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF 67
            Y      G+   ++          +I   V+++  +    AA+    +  +        
Sbjct: 17  EYLIEWKDGHSPSWVP-------SSYIAADVVSEYETPWWTAARKADEQALS-------Q 62

Query: 68  L-----INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNT 122
           L     ++  +  G T L   A  G       L +        + A +D   M    G T
Sbjct: 63  LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE--------AGADLDHRDMRG--GLT 112

Query: 123 ALHEA 127
           ALH A
Sbjct: 113 ALHMA 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 13/73 (17%)

Query: 36  EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKL 89
            + +  G + LH+AA     E+          L+         + +G T L  A    K 
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVE-------ALVELGADIEVEDERGLTALELAREILKT 156

Query: 90  NTATALVDFAKHI 102
                 + F + I
Sbjct: 157 TPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 25/94 (26%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLIN-------KTNNQGDTPLHCAARAGKLNTAT 93
           +G + L   A  G  +   +       L         +    G T LH AA   +     
Sbjct: 75  NGRTALLFVAGLGSDKC-VR------LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           ALV+          A +++   E+  G TAL  A
Sbjct: 128 ALVE--------LGADIEV---EDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 22/90 (24%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINK---TNNQGDTPLHCAARAGKLNTATALVD 97
           +G+    +  K GH                      ++ +TP   AAR       + L+ 
Sbjct: 13  EGAMEYLIEWKDGHSPS-WVP------SSYIAADVVSEYETPWWTAARKADEQALSQLL- 64

Query: 98  FAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
                       VD     +  G TAL   
Sbjct: 65  --------EDRDVD---AVDENGRTALLFV 83

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 83.5 bits (208), Expect = 9e-20
 Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 38/147 (25%)

Query: 226 SGKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELL 280
           +G++PL +A +  +L V   LLE    VN      K+K    P+HLA +NGH  V V+LL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEV-VKLL 54

Query: 281 KEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
            E           G ++          LH AA+NGH ++VK ++E  G +      VN  
Sbjct: 55  LE----------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD------VNAK 97

Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYG 357
           D++G TPLHLAA +GH +VV  LL  G
Sbjct: 98  DKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.7 bits (120), Expect = 7e-08
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + LH+AA++GH E+     +    L+      N  +  G TPLH AAR G L     
Sbjct: 1   NGRTPLHLAARNGHLEV----VKL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+            A V+    ++  G T LH A
Sbjct: 54  LL---------EAGADVN---AKDKNGRTPLHLA 75

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + LH+AA++GH E+     +    L+      N  +  G TPLH AAR G L     
Sbjct: 34  NGRTPLHLAARNGHLEV----VKL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+            A V+    ++  G T LH A
Sbjct: 87  LL---------EAGADVN---AKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.7 bits (115), Expect = 4e-07
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 13/63 (20%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + LH+AA++GH E+     +    L+      N  +  G TPLH AAR G L     
Sbjct: 67  NGRTPLHLAARNGHLEV----VKL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119

Query: 95  LVD 97
           L++
Sbjct: 120 LLE 122

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.5 bits (210), Expect = 9e-20
 Identities = 35/169 (20%), Positives = 48/169 (28%), Gaps = 41/169 (24%)

Query: 221 GISWSSGKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANV 275
           G S       L  A  +  +     LLE     N       N     PI +    G A V
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAGANPN-----APNSYGRRPIQVMM-MGSARV 59

Query: 276 MVELLKEWRCPSLFVTDNGCNI-----------LHFAAKNGHADMVKAIIEIPGTNMTMD 324
             ELL            +G              +H AA+ G  D +  +    G      
Sbjct: 60  -AELL----------LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GAR---- 103

Query: 325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYK 373
             ++  D  G  P+ LA   GH  V   L           N   + A +
Sbjct: 104 --LDVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 70.2 bits (173), Expect = 1e-14
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 31/169 (18%)

Query: 192 NIEDKS-PLSLAIEMGNTDVLEYILRSLPSG----ISWSSGKSPLQVATKKRNLGVCYLL 246
           ++E  +  L+ A   G  + +  +L +   G       S G+ P+QV           LL
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEA---GANPNAPNSYGRRPIQVMMMGSARVAELLL 64

Query: 247 E----VNGYSALKKNKETL-YPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFA 301
                 N       +  TL  P+H A + G  +  + +L             G   +  A
Sbjct: 65  LHGAEPN-----CADPATLTRPVHDAAREGFLDT-LVVLHRAGARLDVRDAWGRLPVDLA 118

Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
            + GH D+ + +                    G+    + A  G S + 
Sbjct: 119 EELGHRDVARYLRA------------AAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
                E     L  AA  G  + V ALL  G +NP+  N  G   
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRP 48

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 13/58 (22%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATALVD 97
           +H AA+ G  +           L       +  +  G  P+  A   G  + A  L  
Sbjct: 82  VHDAAREGFLDT----LVV---LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 10/61 (16%)

Query: 41 DGSSLLHVAAKSGHGEIT----AKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
            +  L  AA  G  E         A       N  N+ G  P+      G    A  L+
Sbjct: 11 PSADWLATAAARGRVEEVRALLEAGAN-----PNAPNSYGRRPIQVMMM-GSARVAELLL 64

Query: 97 D 97
           
Sbjct: 65 L 65

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDT-PLHCAARAGKLNTAT 93
            G   + V    G   +    A+    L+      N  +    T P+H AAR G L+T  
Sbjct: 44  YGRRPIQVMMM-GSARV----AEL---LLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
            L          + A +D+    +A G   +  A
Sbjct: 96  VLHR--------AGARLDV---RDAWGRLPVDLA 118

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 83.6 bits (208), Expect = 2e-19
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 39/160 (24%)

Query: 227 GKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
               L  A +         L+     VN      ++     P+HLA  NGH  + VE+L 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVN-----AEDASGWTPLHLAAFNGHLEI-VEVL- 66

Query: 282 EWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD 331
                      NG ++          L  AA  GH ++V+ +++  G +      VN  D
Sbjct: 67  ---------LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-GAD------VNAND 110

Query: 332 EDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            +G+TPLHLAA+ GH ++V  LL+ G ++ + ++K G TA
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTA 149

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 74.7 bits (185), Expect = 3e-16
 Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 57/184 (30%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISWS----------SGKSPLQVATKKRNLGVC-YLL 246
            L  A   G  D +  ++         +          SG +PL +A    +L +   LL
Sbjct: 17  KLLEAARAGRDDEVRILM---------ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 247 E----VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----- 297
           +    VN       +   + P+ LA   GH  + VE+L            NG ++     
Sbjct: 68  KNGADVN-----AVDHAGMTPLRLAALFGHLEI-VEVL----------LKNGADVNANDM 111

Query: 298 -----LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
                LH AA  GH ++V+ +++  G +      VN  D+ G T   ++  +G+  +   
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKN-GAD------VNAQDKFGKTAFDISIDNGNEDLAEI 164

Query: 353 LLRY 356
           L + 
Sbjct: 165 LQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 5e-14
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
           +    L  AA+ G  D V+ ++   G +      VN  D  G TPLHLAA +GH ++V  
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMAN-GAD------VNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 353 LLRYGRSNPDLKNKQGMTA 371
           LL+ G ++ +  +  GMT 
Sbjct: 66  LLKNG-ADVNAVDHAGMTP 83

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + LH+AA +GH EI     +    L+      N  ++ G TPL  AA  G L     
Sbjct: 46  SGWTPLHLAAFNGHLEI----VEV---LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+            A V+     +  G+T LH A
Sbjct: 99  LL---------KNGADVN---ANDMEGHTPLHLA 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
              +    D    L  AA  G    V  L+  G ++ + ++  G T 
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTP 50

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + L +AA  GH EI  +       L+      N  + +G TPLH AA  G L     
Sbjct: 79  AGMTPLRLAALFGHLEI-VE------VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+            A V+    ++  G TA   +
Sbjct: 132 LL---------KNGADVN---AQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.4 bits (109), Expect = 4e-06
 Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           D    L  AA++G  +   +       L+      N  +  G TPLH AA  G L     
Sbjct: 13  DLGKKLLEAARAGRDDE-VR------ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+            A V+     +  G T L  A
Sbjct: 66  LL---------KNGADVN---AVDHAGMTPLRLA 87

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 13/62 (20%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + LH+AA  GH EI  +       L+      N  +  G T    +   G  + A  
Sbjct: 112 EGHTPLHLAAMFGHLEI-VE------VLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

Query: 95  LV 96
           L 
Sbjct: 165 LQ 166

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 82.4 bits (205), Expect = 4e-19
 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 39/160 (24%)

Query: 227 GKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
             + L  A  + +L     LL+    VN      +N      + +  K G+  +    L 
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVN-----AQNGFGRTALQVM-KLGNPEI-ARRL- 56

Query: 282 EWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD 331
                       G N           +H AA+ G  D ++ ++E    +      VN  D
Sbjct: 57  ---------LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QAD------VNIED 100

Query: 332 EDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            +GN PLHLAA  GH +VV  L+++  SN   +N +G TA
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 76.3 bits (189), Expect = 8e-17
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 53/183 (28%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISW--------SSGKSPLQVATKKRNLGVCYLL--- 246
            L+ A   G+ + L  +       +            G++ LQV     N  +   L   
Sbjct: 8   ELASAAARGDLEQLTSL-------LQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLR 59

Query: 247 --EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI------- 297
               +      K++     IH A + G  +  ++ L           +   ++       
Sbjct: 60  GANPD-----LKDRTGFAVIHDAARAGFLDT-LQTL----------LEFQADVNIEDNEG 103

Query: 298 ---LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
              LH AAK GH  +V+ +++   +N      V   +  G+T   LA L+G ++VV  + 
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYGRNEVVSLMQ 157

Query: 355 RYG 357
             G
Sbjct: 158 ANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.9 bits (170), Expect = 3e-14
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
           + +   N L  AA  G  + + ++++    N      VN  +  G T L +    G+ ++
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQN-NVN------VNAQNGFGRTALQVMK-LGNPEI 52

Query: 350 VYALLRYGRSNPDLKNKQGMTA 371
              LL  G +NPDLK++ G   
Sbjct: 53  ARRLLLRG-ANPDLKDRTGFAV 73

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 23/93 (24%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G +++H AA++G  +      Q    L+      N  +N+G+ PLH AA+ G L     
Sbjct: 69  TGFAVIHDAARAGFLDT----LQT---LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           LV              + +   N  G+TA   A
Sbjct: 122 LV---------KHTASN-VGHRNHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 39/127 (30%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           AA RG+++    L     ++  Q+           G + L V    G+ EI A+      
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQN---------GFGRTALQVMKL-GNPEI-AR------ 54

Query: 67  FLI------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120
            L+      +  +  G   +H AARAG L+T   L++F        QA V++   E+  G
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF--------QADVNI---EDNEG 103

Query: 121 NTALHEA 127
           N  LH A
Sbjct: 104 NLPLHLA 110

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.7 bits (107), Expect = 9e-06
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI-------NKTNNQGDTPLHCAARAGKLNTAT 93
           +G+  LH+AAK GH  +  +      FL+          N++GDT    A   G+    +
Sbjct: 102 EGNLPLHLAAKEGHLRV-VE------FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154

Query: 94  ALVD 97
            +  
Sbjct: 155 LMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 27/94 (28%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
              + L  AA  G  E           L+      N  N  G T L      G    A  
Sbjct: 4   PWGNELASAAARGDLEQ-LT------SLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARR 55

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           L+          + A  DL   ++  G   +H+A
Sbjct: 56  LL---------LRGANPDL---KDRTGFAVIHDA 77

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 82.0 bits (204), Expect = 6e-19
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 32/156 (20%)

Query: 227 GKSPLQVATKKRNLGVC-YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
               L  A +         L+             +  P+HLA + GH +   E+L     
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTS--PLHLAAQYGHFST-TEVL----- 53

Query: 286 PSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN 335
                   G +           LH AA  GHA++V+ +++  G +      VN  D    
Sbjct: 54  -----LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH-GAD------VNAKDMLKM 101

Query: 336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           T LH A  H H +VV  L++YG ++   ++K   TA
Sbjct: 102 TALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTA 136

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.0 bits (183), Expect = 5e-16
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 34/166 (20%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISWS---SGKSPLQVATKKRNLGVCYLLEVNGYSAL 254
            L  A   G  D +  ++ +   G  ++    G SPL +A +  +     +L   G S  
Sbjct: 5   KLLEAARAGQDDEVRILMAN---GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKN 304
            + K    P+H+A   GHAN+ VE+L            +G ++          LH+A ++
Sbjct: 62  ARTKVDRTPLHMAASEGHANI-VEVL----------LKHGADVNAKDMLKMTALHWATEH 110

Query: 305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
            H ++V+ +I+  G +      V+   +   T   ++  +G+  + 
Sbjct: 111 NHQEVVELLIKY-GAD------VHTQSKFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 66.3 bits (163), Expect = 2e-13
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
           +    L  AA+ G  D V+ ++   G            D  G +PLHLAA +GH      
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN-GAP------FTT-DWLGTSPLHLAAQYGHFSTTEV 52

Query: 353 LLRYGRSNPDLKNKQGMTA 371
           LLR G  + D + K   T 
Sbjct: 53  LLRAG-VSRDARTKVDRTP 70

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 38/140 (27%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW----SSGKSPLQVATKKRNLGVCYLL 246
            +    SPL LA + G+    E +LR+   G+S        ++PL +A  + +  +  +L
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVLLRA---GVSRDARTKVDRTPLHMAASEGHANIVEVL 86

Query: 247 -----EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI---- 297
                +VN   A    K T   +H A ++ H  V VELL             G ++    
Sbjct: 87  LKHGADVN---AKDMLKMT--ALHWATEHNHQEV-VELL----------IKYGADVHTQS 130

Query: 298 ------LHFAAKNGHADMVK 311
                    +  NG+ D+ +
Sbjct: 131 KFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.7 bits (107), Expect = 6e-06
 Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 30/96 (31%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G+S LH+AA+ GH     +       L+      +       TPLH AA  G  N    
Sbjct: 33  LGTSPLHLAAQYGHFST-TE------VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAM---GNTALHEA 127
           L+     +              NA      TALH A
Sbjct: 86  LLKHGADV--------------NAKDMLKMTALHWA 107

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 34/98 (34%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
              + LH+AA  GH  I          L+      N  +    T LH A           
Sbjct: 66  VDRTPLHMAASEGHANIVE-------VLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 95  LVDF-----AKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L+ +      +                +    TA   +
Sbjct: 119 LIKYGADVHTQ----------------SKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 23/92 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINK-----TNNQGDTPLHCAARAGKLNTATAL 95
           D    L  AA++G  +           L+       T+  G +PLH AA+ G  +T   L
Sbjct: 1   DLGKKLLEAARAGQDDEVR-------ILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 96  VDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           +   +          D       +  T LH A
Sbjct: 54  L---RA-----GVSRD---ARTKVDRTPLHMA 74

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.6 bits (99), Expect = 8e-05
 Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 13/58 (22%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTA 92
              + LH A +  H E+  +       LI      +  +    T    +   G  + A
Sbjct: 99  LKMTALHWATEHNHQEV-VE------LLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.8 bits (208), Expect = 8e-19
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 38/165 (23%)

Query: 227 GKSPLQVATKKRNLGVC-----YLL----EVNGYSALKKNKETLYPIHLACKNGHANVMV 277
           G S L +A       +       +      +N      +N     P+HLA       +  
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-----FQNNLQQTPLHLAVITNQPEI-A 61

Query: 278 ELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVV 327
           E L             GC+           LH A + G    V  + +   T   +  ++
Sbjct: 62  EAL----------LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHSIL 110

Query: 328 NKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQ-GMTA 371
              + +G+T LHLA++HG+  +V  L+  G ++ + +    G TA
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 154

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 49/327 (14%), Positives = 93/327 (28%), Gaps = 109/327 (33%)

Query: 71  KTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFM 130
           +    GD+ LH A    +      ++   K       A ++    +N +  T LH A   
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKG----DLAFLN---FQNNLQQTPLHLA--- 52

Query: 131 LGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSL--DPKLS 188
                                                 +I +   IA  L+    DP+L 
Sbjct: 53  --------------------------------------VITNQPEIAEALLGAGCDPEL- 73

Query: 189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEV 248
             ++    +PL LA E G    +  +           S  +P   +             +
Sbjct: 74  --RDFRGNTPLHLACEQGCLASVGVLT---------QSCTTPHLHS------------IL 110

Query: 249 NGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------- 297
                   N      +HLA  +G+  + VELL             G ++           
Sbjct: 111 K-----ATNYNGHTCLHLASIHGYLGI-VELL----------VSLGADVNAQEPCNGRTA 154

Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           LH A    + D+V  +++  G +      VN++   G +P  L      +++   L +  
Sbjct: 155 LHLAVDLQNPDLVSLLLKC-GAD------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207

Query: 358 RSNPDLKNKQGMTAYKMALREYYMQTS 384
                    +            + + +
Sbjct: 208 -LENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 48/323 (14%), Positives = 86/323 (26%), Gaps = 109/323 (33%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQY---YPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
           DG S LH+A       +T ++ +        +N  NN   TPLH A    +   A AL+ 
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 98  FAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNP 157
                   +    +L    +  GNT LH A               G  L         + 
Sbjct: 67  --------AGCDPELR---DFRGNTPLHLA------------CEQG-CLASV-GVLTQSC 101

Query: 158 TLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRS 217
           T         +I+ +                   N    + L LA   G   ++E ++  
Sbjct: 102 T----TPHLHSILKA------------------TNYNGHTCLHLASIHGYLGIVELLV-- 137

Query: 218 LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMV 277
                   S  + +                 NG +AL          HLA    + ++ V
Sbjct: 138 --------SLGADVNAQEPC-----------NGRTAL----------HLAVDLQNPDL-V 167

Query: 278 ELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVV 327
            LL +           G ++                     + + + ++           
Sbjct: 168 SLLLK----------CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLE------N 210

Query: 328 NKMDEDGNTPLHLAALHGHSQVV 350
            +M  +             ++  
Sbjct: 211 LQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 27/125 (21%)

Query: 12  AAIRGNID--DFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLI 69
           A  +G +     L        LH I +    +G + LH+A+  G+  I  +       L+
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI-VE------LLV 137

Query: 70  N-------KTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNT 122
           +       +    G T LH A      +  + L+           A V+        G +
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK--------CGADVN---RVTYQGYS 186

Query: 123 ALHEA 127
                
Sbjct: 187 PYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 13/67 (19%)

Query: 36  EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKL 89
            +   +G + LH+A    + ++          L+      N+   QG +P          
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDL-VS------LLLKCGADVNRVTYQGYSPYQLTWGRPST 197

Query: 90  NTATALV 96
                L 
Sbjct: 198 RIQQQLG 204

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 10/109 (9%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
            +    +                  +        +L  ++  G  D+V+ II     +  
Sbjct: 8   SLPPGKRTNLRKT-GSERIA-HGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYE-VDD-- 62

Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
                +  +++G T LH A   GH+++V  L+++G  N +  +  G T 
Sbjct: 63  ----PSLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTP 106

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 28/208 (13%), Positives = 58/208 (27%), Gaps = 38/208 (18%)

Query: 196 KSPLSLAIEMGNTDVLEYILRSLPSGISWSS-GKSPLQVATKKRNLG-VCYLLE----VN 249
           +  L                 +    + ++    + L  ++ +     V  ++      +
Sbjct: 6   QVSLPPGKRTNLRKTGSE-RIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64

Query: 250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LH 299
                  N E +  +H A   GH  + V+ L             G N+          LH
Sbjct: 65  -----LPNDEGITALHNAVCAGHTEI-VKFL----------VQFGVNVNAADSDGWTPLH 108

Query: 300 FAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS 359
            AA   +  + K ++E  G  +     +   D             G++Q    L      
Sbjct: 109 CAASCNNVQVCKFLVES-GAAV---FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ-E 163

Query: 360 NPDLKNKQGMTAYKMALREYYMQTSIAE 387
              + NK  + A      +   +  + E
Sbjct: 164 KMGIMNKGVIYALWDYEPQNDDELPMKE 191

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 40/159 (25%)

Query: 226 SGKSPLQVATKKRNLGVCYLL-----EVNGYSALKKNKETLYPIHLACKNGHANVMVELL 280
           +G+  L    +                V               +  +   G  ++ V+ +
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVK----FNPLPLA--LLLDSSLEGEFDL-VQRI 56

Query: 281 KEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
                          +           LH A   GH ++VK +++  G N      VN  
Sbjct: 57  ----------IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVN------VNAA 99

Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGM 369
           D DG TPLH AA   + QV   L+  G +         M
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDM 137

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 41/316 (12%), Positives = 71/316 (22%), Gaps = 103/316 (32%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLIN-----KTNNQGDTPLHCAARAGKLNTATAL 95
            G   L    ++   +  +         I      K N      L  ++  G+ +    +
Sbjct: 4   TGQVSLPPGKRTNLRKTGS-------ERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRI 56

Query: 96  VDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLS 155
           +                  + N  G TALH A              AG            
Sbjct: 57  IY--------EVDDPS---LPNDEGITALHNA------------VCAGH----------- 82

Query: 156 NPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK---SPLSLAIEMGNTDVLE 212
                               I  FLV          N  D    +PL  A    N  V +
Sbjct: 83  ------------------TEIVKFLVQFGVN----VNAADSDGWTPLHCAASCNNVQVCK 120

Query: 213 YILRS----LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC 268
           +++ S         S     +      ++        L          NK  +Y +    
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYE 180

Query: 269 KNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVN 328
                 +                 +   I+H        D ++                 
Sbjct: 181 PQNDDEL------------PMKEGDCMTIIH----REDEDEIEWWW------------AR 212

Query: 329 KMDEDGNTPLHLAALH 344
             D++G  P +L  L+
Sbjct: 213 LNDKEGYVPRNLLGLY 228

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 41/130 (31%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           A   G+ +   FL     ++   D         +DG + LH AA   + ++  K      
Sbjct: 77  AVCAGHTEIVKFLVQFGVNVNAAD---------SDGWTPLHCAASCNNVQV-CK------ 120

Query: 67  FLI---------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMEN 117
           FL+           ++ Q           G    +  L           Q  +    + N
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG--------VQEKMG---IMN 169

Query: 118 AMGNTALHEA 127
                AL + 
Sbjct: 170 KGVIYALWDY 179

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 80.9 bits (201), Expect = 2e-18
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 32/153 (20%)

Query: 230 PLQVATKKRNLG-VCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSL 288
            L  A  + ++  V  LL          N+     + +    G   +    L        
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAI-ALEL-------- 54

Query: 289 FVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPL 338
                G +           +H AA+ G  D +K ++E  G +      VN  D  G  P+
Sbjct: 55  --LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH-GAD------VNVPDGTGALPI 105

Query: 339 HLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           HLA   GH+ VV  L     S+   ++ +G+T 
Sbjct: 106 HLAVQEGHTAVVSFLAA--ESDLHRRDARGLTP 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 80.1 bits (199), Expect = 3e-18
 Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 40/173 (23%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISW--SSGKSPLQVATKKRNLGVCYLLE----VNGY 251
            LS A   G+   +  +L             GK+ LQV           LL+     N  
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN-- 62

Query: 252 SALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFA 301
                +  +  P+H A + G  +  +++L           ++G ++          +H A
Sbjct: 63  -VQDTSGTS--PVHDAARTGFLDT-LKVL----------VEHGADVNVPDGTGALPIHLA 108

Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
            + GH  +V  +     ++      +++ D  G TPL LA   G   +V  L 
Sbjct: 109 VQEGHTAVVSFLAA--ESD------LHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 50.9 bits (123), Expect = 6e-08
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 25/93 (26%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G+S +H AA++G  +           L+      N  +  G  P+H A + G     + 
Sbjct: 67  SGTSPVHDAARTGFLDTLK-------VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L          +++ +      +A G T L  A
Sbjct: 120 LA---------AESDLH---RRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 50.5 bits (122), Expect = 8e-08
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 22/136 (16%)

Query: 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPSG----ISWSSGKSPLQVATKKRNLGVC-Y 244
             N   K+ L + +  G+T +   +L+    G    +  +SG SP+  A +   L     
Sbjct: 31  ALNRFGKTALQVMMF-GSTAIALELLKQ---GASPNVQDTSGTSPVHDAARTGFLDTLKV 86

Query: 245 LLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL-----KEWRCPSLFVTDNGCNILH 299
           L+E +G      +     PIHLA + GH  V V  L        R         G   L 
Sbjct: 87  LVE-HGADVNVPDGTGALPIHLAVQEGHTAV-VSFLAAESDLHRR------DARGLTPLE 138

Query: 300 FAAKNGHADMVKAIIE 315
            A + G  D+V  +  
Sbjct: 139 LALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.2 bits (116), Expect = 4e-07
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI-----NKTNNQGDTPLHCAARAGKLNTATAL 95
            G+  +H+A + GH  + +       FL      ++ + +G TPL  A + G  +    L
Sbjct: 100 TGALPIHLAVQEGHTAVVS-------FLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 96  VD 97
             
Sbjct: 153 QG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 40/128 (31%)

Query: 12  AAIRGNIDD---FLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYY 65
           AA RG++ +    L          +           G + L V    G   I    A   
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALN---------RFGKTALQVMMF-GSTAI----ALE- 53

Query: 66  PFLI------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAM 119
             L+      N  +  G +P+H AAR G L+T   LV+          A V++    +  
Sbjct: 54  --LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE--------HGADVNV---PDGT 100

Query: 120 GNTALHEA 127
           G   +H A
Sbjct: 101 GALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.7 bits (107), Expect = 6e-06
 Identities = 14/38 (36%), Positives = 16/38 (42%)

Query: 334 GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
               L  AA  G  Q V  LL     +PD  N+ G TA
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 14/83 (16%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPST 105
           L  AA  G  +   ++        +  N  G T L      G    A  L+         
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELL--------- 55

Query: 106 SQ-APVDLLRMENAMGNTALHEA 127
            Q A  +   +++  G + +H+A
Sbjct: 56  KQGASPN---VQDTSGTSPVHDA 75

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 79.8 bits (198), Expect = 2e-18
 Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 32/145 (22%)

Query: 225 SSGKSPLQVATKKRNLGVC-YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEW 283
            S  + L  A  +  +     LLE  G      N+    PI +    G A V  ELL   
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMM-MGSAQV-AELL--- 63

Query: 284 RCPSLFVTDNGCNI-----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE 332
                    +G              +H AA+ G  D +  +    G        ++  D 
Sbjct: 64  -------LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GAR------LDVCDA 109

Query: 333 DGNTPLHLAALHGHSQVVYALLRYG 357
            G  P+ LA   GH  +   L    
Sbjct: 110 WGRLPVDLAEEQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.5 bits (179), Expect = 8e-16
 Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 33/127 (25%)

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNG 305
            + +    +  A   G     V  L           + G +           +      G
Sbjct: 10  GSSDA--GLATAAARGQVET-VRQL----------LEAGADPNALNRFGRRPIQVMM-MG 55

Query: 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNT-PLHLAALHGHSQVVYALLRYGRSNPDLK 364
            A + + ++   G         N  D    T P+H AA  G    +  L R G +  D+ 
Sbjct: 56  SAQVAELLLLH-GAE------PNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVC 107

Query: 365 NKQGMTA 371
           +  G   
Sbjct: 108 DAWGRLP 114

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           ++ +    +  L  AA  G  + V  LL  G ++P+  N+ G   
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRP 48

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 13/58 (22%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATALVD 97
           +H AA+ G  +           L       +  +  G  P+  A   G  + A  L  
Sbjct: 82  VHDAAREGFLDTLV-------VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 13/61 (21%), Positives = 16/61 (26%), Gaps = 10/61 (16%)

Query: 41 DGSSLLHVAAKSGHGEIT----AKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
             + L  AA  G  E         A       N  N  G  P+      G    A  L+
Sbjct: 11 SSDAGLATAAARGQVETVRQLLEAGAD-----PNALNRFGRRPIQVMMM-GSAQVAELLL 64

Query: 97 D 97
           
Sbjct: 65 L 65

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 26/94 (27%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDT-PLHCAARAGKLNTAT 93
            G   + V    G  ++    A+    L+      N  +    T P+H AAR G L+T  
Sbjct: 44  FGRRPIQVMMM-GSAQV----AEL---LLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
            L          + A +D   + +A G   +  A
Sbjct: 96  VLHR--------AGARLD---VCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 13/60 (21%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEA 127
           I+      D  L  AA  G++ T   L+            A  +     N  G   +   
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLL---------EAGADPN---ALNRFGRRPIQVM 52

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 84.3 bits (208), Expect = 2e-18
 Identities = 45/322 (13%), Positives = 103/322 (31%), Gaps = 33/322 (10%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEAL 128
                   +            +  +  +     I     +PV     +       L   L
Sbjct: 12  NENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLL 71

Query: 129 FMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS 188
           F              +SL    S   S    +       +  + L  +     +    L+
Sbjct: 72  FPE-------IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 124

Query: 189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW----SSGKSPLQVATKKRNLG--- 241
              +    +PL     + N ++++++++    G +     + G+S L  A K  N     
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVKHLVKH---GSNRLYGDNMGESCLVKAVKSVNNYDSG 181

Query: 242 -VCYLLEVNGYSALKKNKETLYPIHLACK-----------NGHANVMVELLKEWRCPSLF 289
               LL+      + ++      +H                 + ++++  + + +   + 
Sbjct: 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 241

Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
              N              D +   +++      +  ++N  D +G+T L++AA  G+  +
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDL---KWIIANMLNAQDSNGDTCLNIAARLGNISI 298

Query: 350 VYALLRYGRSNPDLKNKQGMTA 371
           V ALL YG ++P + NK G+  
Sbjct: 299 VDALLDYG-ADPFIANKSGLRP 319

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 33/191 (17%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAG---KLNT 91
            G++ LH      + E+  K       L+         +N G++ L  A ++       T
Sbjct: 130 HGNTPLHWLTSIANLEL-VK------HLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 182

Query: 92  ATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHS 151
             AL+D+              L +E++M  T LH  +   G       +     + M   
Sbjct: 183 FEALLDYLY----------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI 232

Query: 152 YFLSNPTLAIDDTIKTNIINSLVA----IAYFLVSLDPKLSCCKNIEDK---SPLSLAIE 204
               N  +      K +  N             + L   ++   N +D    + L++A  
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292

Query: 205 MGNTDVLEYIL 215
           +GN  +++ +L
Sbjct: 293 LGNISIVDALL 303

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 14/91 (15%)

Query: 40  TDGSSLLHVAAKSGHGEITAKIAQYYPF---LINKTNNQGDTPLHCAARAGKLNTATALV 96
           T+              +   +          ++N  ++ GDT L+ AAR G ++   AL+
Sbjct: 244 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303

Query: 97  DFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           D          A   +    N  G   +   
Sbjct: 304 D--------YGADPFI---ANKSGLRPVDFG 323

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.6 bits (195), Expect = 2e-18
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 28/105 (26%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKA 312
           P+HLA +NGH  V V+LL           + G ++          LH AA+NGH ++VK 
Sbjct: 5   PLHLAARNGHLEV-VKLL----------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53

Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           ++E  G +      VN  D++G TPLHLAA +GH +VV  LL  G
Sbjct: 54  LLEA-GAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 76.2 bits (189), Expect = 1e-17
 Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 8/79 (10%)

Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
           NG   LH AA+NGH ++VK ++E  G +      VN  D++G TPLHLAA +GH +VV  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GAD------VNAKDKNGRTPLHLAARNGHLEVVKL 53

Query: 353 LLRYGRSNPDLKNKQGMTA 371
           LL  G ++ + K+K G T 
Sbjct: 54  LLEAG-ADVNAKDKNGRTP 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.0 bits (121), Expect = 3e-08
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 24/93 (25%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + LH+AA++GH E+     +    L+      N  +  G TPLH AAR G L     
Sbjct: 1   NGRTPLHLAARNGHLEV----VKL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L++        + A V+    ++  G T LH A
Sbjct: 54  LLE--------AGADVN---AKDKNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.7 bits (115), Expect = 2e-07
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 13/63 (20%)

Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
          +G + LH+AA++GH E+     +    L+      N  +  G TPLH AAR G L     
Sbjct: 34 NGRTPLHLAARNGHLEV----VKL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

Query: 95 LVD 97
          L++
Sbjct: 87 LLE 89

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 84.6 bits (209), Expect = 3e-18
 Identities = 48/342 (14%), Positives = 92/342 (26%), Gaps = 83/342 (24%)

Query: 25  DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYY---PFLINKTNNQGDTPLH 81
           +   + L     K       +  VAA +G                 ++     +      
Sbjct: 75  NRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA-LDTLCLLLTSDEIVKVIQAENYQAFR 133

Query: 82  CAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSI 141
            AA  G L+    L            AP +++ M  A    A   A            + 
Sbjct: 134 LAAENGHLHVLNRLC---------ELAPTEIMAMIQAENYHAFRLA------------AE 172

Query: 142 AGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK---SP 198
            G      H                       + +   L  L P       I+ +   + 
Sbjct: 173 NG------H-----------------------LHVLNRLCELAPTE-ATAMIQAENYYAF 202

Query: 199 LSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNK 258
              A+  G+ +V+ ++L   P  ++++          +     V   +  +      + K
Sbjct: 203 RWAAVGRGHHNVINFLL-DCPVMLAYAEIH-----EFEYGEKYVNPFIARHVN----RLK 252

Query: 259 ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA---DMVKAIIE 315
           E      L+  +G  ++ V   +            G  +L    +       D ++ ++ 
Sbjct: 253 EMHDAFKLSNPDGVFDL-VTKSEC---------LQGFYMLRNLIRRNDEVLLDDIRFLLS 302

Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           IPG           +  D N  L LA   G+      LL   
Sbjct: 303 IPGIKALAP--TATIPGDANELLRLALRLGNQGACALLLSIP 342

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.5 bits (206), Expect = 7e-18
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 12/188 (6%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNG 250
           +N+      +  + +      E I   LP   +    +  L +     N     L     
Sbjct: 27  ENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWS--- 83

Query: 251 YSALKKNKETLYPIHLACKNGHANV--MVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD 308
             A KK  ++     +A   G ++    + LL         +          AA+NGH  
Sbjct: 84  -DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 142

Query: 309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS-NPDLKNKQ 367
           ++  + E+        E++  +  +      LAA +GH  V+  L     +    +   +
Sbjct: 143 VLNRLCELAP-----TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 197

Query: 368 GMTAYKMA 375
              A++ A
Sbjct: 198 NYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 43/284 (15%), Positives = 76/284 (26%), Gaps = 49/284 (17%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKT-NNQGDTPLHCAARAGKLNTATALVDFA 99
           +      +AA++GH  +  ++ +  P  I      +       AA  G L+    L    
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC--- 183

Query: 100 KHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTL 159
                   AP +   M  A    A   A    G  NV               + L  P  
Sbjct: 184 ------ELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN-------------FLLDCPV- 223

Query: 160 AIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLP 219
            +              +  F+          +  E      L+   G  D++        
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIAR-----HVNRLKEMHDAFKLSNPDGVFDLVTK------ 272

Query: 220 SGISWSSGKSPLQVATKKRNLG----VCYLLEVNGYSAL----KKNKETLYPIHLACKNG 271
                  G   L+   ++ +      + +LL + G  AL        +    + LA + G
Sbjct: 273 --SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 330

Query: 272 HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
           +      LL            N     +     G  D+    +E
Sbjct: 331 NQGA-CALLLSIPSVLALTKANN---YYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 36/216 (16%), Positives = 60/216 (27%), Gaps = 36/216 (16%)

Query: 190 CKNIEDKSPLSLAIEMGNTDVLEYILR---SLPSGISWSSGKSPLQVATKKRNLGVC-YL 245
               E+     LA E G+  VL  +     +    +  +      ++A +  +L V   L
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182

Query: 246 LEVNGYSALK-KNKETLYPIHLAC-KNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAK 303
            E+    A      E  Y    A    GH NV+  LL      +               +
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA--------YAEIHEFE 234

Query: 304 NGHADMVKAIIEIPGTNMTMD------------EVVNK-MDEDGNTPLHLAALHGHSQVV 350
            G   +   I         M             ++V K     G   L          ++
Sbjct: 235 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLL 294

Query: 351 YALLRYGRSNPDLK--------NKQGMTAYKMALRE 378
              +R+  S P +K                ++ALR 
Sbjct: 295 -DDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 329

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 81.1 bits (201), Expect = 7e-18
 Identities = 39/217 (17%), Positives = 73/217 (33%), Gaps = 45/217 (20%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW-SSGKSPLQVATKKRNLGVC-YLLE- 247
              E      +  + G++        S        S  ++P   A +K +      LLE 
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVP---SSYIAADVVSEYETPWWTAARKADEQALSQLLED 67

Query: 248 --VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-------- 297
             V+       ++     +      G     V LL           + G ++        
Sbjct: 68  RDVD-----AVDENGRTALLFVAGLGSDKC-VRLL----------AEAGADLDHRDMRGG 111

Query: 298 ---LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
              LH AA     ++V+A++E+ G +      +   DE G T L LA     +      +
Sbjct: 112 LTALHMAAGYVRPEVVEALVEL-GAD------IEVEDERGLTALELAREILKTTPKGNPM 164

Query: 355 RYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEK 391
           ++GR    +  ++ +   +  + EY     I EK+ K
Sbjct: 165 QFGR---RIGLEKVINVLEGQVFEYAEVDEIVEKRGK 198

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 28/133 (21%)

Query: 247 EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-------LH 299
           EVN     +   E      +  K+GH+   V                  ++         
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSS-----------YIAADVVSEYETPWW 50

Query: 300 FAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS 359
            AA+      +  ++E    +      V+ +DE+G T L   A  G  + V  L   G +
Sbjct: 51  TAARKADEQALSQLLE--DRD------VDAVDENGRTALLFVAGLGSDKCVRLLAEAG-A 101

Query: 360 NPDLKN-KQGMTA 371
           + D ++ + G+TA
Sbjct: 102 DLDHRDMRGGLTA 114

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 55/202 (27%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW----SSGKSPLQVATKKRNLGVCYLL 246
              E ++P   A    +   L  +L              +G++ L       +     LL
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLL----EDRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

Query: 247 -----EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI---- 297
                +++      +   T   +H+A       V VE L E           G +I    
Sbjct: 97  AEAGADLD--HRDMRGGLT--ALHMAAGYVRPEV-VEALVE----------LGADIEVED 141

Query: 298 ------LHFAAKNGHADMVKAIIEIPGTNMTMDEV----------------VNKMDEDGN 335
                 L  A +          ++  G  + +++V                + +    G 
Sbjct: 142 ERGLTALELAREILKTTPKGNPMQF-GRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200

Query: 336 TPLHLAALHGHSQVVYALLRYG 357
              +L          +    + 
Sbjct: 201 DVEYLVRWKDGGDCEWVKGVHV 222

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 46/347 (13%), Positives = 80/347 (23%), Gaps = 130/347 (37%)

Query: 8   AYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF 67
            Y      G+   ++          +I   V+++  +    AA+    +  +        
Sbjct: 18  EYLIEWKDGHSPSWVP-------SSYIAADVVSEYETPWWTAARKADEQALS-------Q 63

Query: 68  L-----INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNT 122
           L     ++  +  G T L   A  G       L +        + A +D   M    G T
Sbjct: 64  LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE--------AGADLDHRDMRG--GLT 113

Query: 123 ALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVS 182
           ALH A            +                                   +   LV 
Sbjct: 114 ALHMA------------AGYVR-----------------------------PEVVEALVE 132

Query: 183 LDPKLSCCKNIEDK---SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRN 239
           L   +     +ED+   + L LA E+  T                     P+Q   +   
Sbjct: 133 LGADI----EVEDERGLTALELAREILKTTPKGN----------------PMQFGRRIGL 172

Query: 240 LGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILH 299
             V  +LE   +       E      +  K G                      G ++ +
Sbjct: 173 EKVINVLEGQVF-------EYAEVDEIVEKRGK---------------------GKDVEY 204

Query: 300 FAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
                   D                 V   + +D    L  A     
Sbjct: 205 LVRWKDGGDCEWVKGV---------HVAEDVAKDYEDGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 22/90 (24%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINK---TNNQGDTPLHCAARAGKLNTATALVD 97
           +G+    +  K GH                      ++ +TP   AAR       + L+ 
Sbjct: 14  EGAMEYLIEWKDGHSPSWV-------PSSYIAADVVSEYETPWWTAARKADEQALSQLL- 65

Query: 98  FAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
                       VD     +  G TAL   
Sbjct: 66  --------EDRDVD---AVDENGRTALLFV 84

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 79.7 bits (198), Expect = 9e-18
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 39/160 (24%)

Query: 227 GKSPLQVATKKRNLGVC-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
            ++PL VA           L+E    +       K+ E    +  A KN    +  E L 
Sbjct: 35  NRTPLMVACMLGMENAIDKLVENFDKLE-----DKDIEGSTALIWAVKNNRLGI-AEKL- 87

Query: 282 EWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD 331
                       G N+          L ++   G+++M   ++E  G N      VN  +
Sbjct: 88  ---------LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GAN------VNDRN 131

Query: 332 EDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
            +G TPL +A+ +G S++V  LL  G ++   ++  G+TA
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTA 170

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 74.7 bits (185), Expect = 5e-16
 Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 53/192 (27%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--------SSGKSPLQVATKKRNLGV 242
           ++  +++PL +A  +G  + ++ +       +            G + L  A K   LG+
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKL-------VENFDKLEDKDIEGSTALIWAVKNNRLGI 83

Query: 243 C-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI 297
              LL     VN      K+     P+  +   G++ +    L           ++G N+
Sbjct: 84  AEKLLSKGSNVN-----TKDFSGKTPLMWSIIFGYSEM-SYFL----------LEHGANV 127

Query: 298 ----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS 347
                     L  A+K G +++VK ++E+ G +      ++  D  G T    A + G  
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLEL-GAD------ISARDLTGLTAEASARIFGRQ 180

Query: 348 QVVYALLRYGRS 359
           +V+       R+
Sbjct: 181 EVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.4 bits (140), Expect = 5e-10
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 14/80 (17%)

Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
            NG  +     +      +  +              N  D    TPL +A + G    + 
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLR-------------NYRDSYNRTPLMVACMLGMENAID 52

Query: 352 ALLRYGRSNPDLKNKQGMTA 371
            L+       + K+ +G TA
Sbjct: 53  KLVENF-DKLEDKDIEGSTA 71

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.1 bits (108), Expect = 9e-06
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 34/98 (34%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + L  +   G+ E+ +       FL+      N  N +G+TPL  A++ G+      
Sbjct: 100 SGKTPLMWSIIFGYSEM-SY------FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152

Query: 95  LVDF-----AKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L++      A+                +  G TA   A
Sbjct: 153 LLELGADISAR----------------DLTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 48/132 (36%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           A + G  +  D L      +  +D          +GS+ L  A K+    I A+      
Sbjct: 42  ACMLGMENAIDKLVENFDKLEDKD---------IEGSTALIWAVKNNRLGI-AE------ 85

Query: 67  FLI------NKTNNQGDTPLHCAARAGKLNTATALVDF-----AKHIPSTSQAPVDLLRM 115
            L+      N  +  G TPL  +   G    +  L++       +               
Sbjct: 86  KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR--------------- 130

Query: 116 ENAMGNTALHEA 127
            N  G T L  A
Sbjct: 131 -NLEGETPLIVA 141

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 28/92 (30%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDF-- 98
           +G  +  +  +    +          FL N  ++   TPL  A   G  N    LV+   
Sbjct: 7   NGEIVEKIKDEKSINQNLD-------FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFD 59

Query: 99  ---AKHIPSTSQAPVDLLRMENAMGNTALHEA 127
               K                +  G+TAL  A
Sbjct: 60  KLEDK----------------DIEGSTALIWA 75

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 13/66 (19%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + L VA+K G  EI  K       L+      +  +  G T    A   G+      
Sbjct: 133 EGETPLIVASKYGRSEI-VK------KLLELGADISARDLTGLTAEASARIFGRQEVIKI 185

Query: 95  LVDFAK 100
             +  +
Sbjct: 186 FTEVRR 191

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 23/131 (17%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKA 312
           P+ LA K      + +LLK            GC +          LH AA   + +    
Sbjct: 6   PLLLAAKENDVQALSKLLK----------FEGCEVHQRGAMGETALHIAALYDNLEAAMV 55

Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAY 372
           ++E     +   E +     +G T LH+A ++ +  +V ALL  G ++   +    +  Y
Sbjct: 56  LMEA-APELV-FEPMTSELYEGQTALHIAVINQNVNLVRALLARG-ASVSARATGSVFHY 112

Query: 373 KMALREYYMQT 383
           +     YY + 
Sbjct: 113 RPHNLIYYGEH 123

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 48/215 (22%), Positives = 78/215 (36%), Gaps = 49/215 (22%)

Query: 196 KSPLSLAIEMGNTDVLEYILRSLPSGISWS--------SGKSPLQVATKKRNLGVCYLL- 246
           +SPL LA +  +   L  +L                   G++ L +A    NL    +L 
Sbjct: 4   ESPLLLAAKENDVQALSKLL------KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM 57

Query: 247 ----EVNGYSALKKNKETLYPIHLACKNGHANVMVELL-------------KEWRCPSLF 289
               E+       +  E    +H+A  N + N +V  L               +      
Sbjct: 58  EAAPELVFEPMTSELYEGQTALHIAVINQNVN-LVRALLARGASVSARATGSVFHYRPHN 116

Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
           +   G + L FAA  G  ++V+ +IE  G +      +   D  GNT LH+  L  +   
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEH-GAD------IRAQDSLGNTVLHILILQPNKTF 169

Query: 350 VYA----LLRYG-----RSNPDLKNKQGMTAYKMA 375
                  LL Y      +S   + N QG+T +K+A
Sbjct: 170 ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 14/97 (14%)

Query: 41  DGSSLLHVAAKSGHGEITAKI-----AQYYPFLINKTNNQGDTPLHCAARAGKLNTATAL 95
            G + LH+AA   + E  A +      +     +     +G T LH A     +N   AL
Sbjct: 36  MGETALHIAALYDNLEA-AMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94

Query: 96  VDF-----AKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           +       A+   +T              G   L  A
Sbjct: 95  LARGASVSAR---ATGSVFHYRPHNLIYYGEHPLSFA 128

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 41/140 (29%)

Query: 12  AAIRGNID--DFLFS---DIPKQD----LHHIFEKVLTDGSSLLHVAAKSGHGEITAKIA 62
           A I  N++    L +    +  +      H+    ++  G   L  AA  G  EI     
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR--- 138

Query: 63  QYYPFLI------NKTNNQGDTPLHCAARAGKLNTATALVDF---------AKHIPSTSQ 107
                LI         ++ G+T LH          A  + +           K       
Sbjct: 139 ----LLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK------- 187

Query: 108 APVDLLRMENAMGNTALHEA 127
               L  + N  G T    A
Sbjct: 188 ---SLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 29/103 (28%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           AA  G+ +    L     DI  QD         + G+++LH+     +     ++     
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQD---------SLGNTVLHILILQPNKTFACQMYN--- 175

Query: 67  FLI------------NKTNNQGDTPLHCAARAGKLNTATALVD 97
            L+               NNQG TP   A   G +     L+ 
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 76.1 bits (188), Expect = 3e-17
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 26/124 (20%)

Query: 267 ACKNGHANVMVELLKEWRCPSLFVTDNGCNI-------LHFAAKNGHADMVKAIIEIPGT 319
              + H +     L             G ++       L  AA+ G  D V+ ++   G 
Sbjct: 1   GSSHHHHHH-SSGL----------VPRGSHMGSDLGKKLLEAARAGQDDEVRILMAN-GA 48

Query: 320 NMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREY 379
           +      V   D++G+TPLHLAA +GH +VV  LL  G ++   ++K G TA+ +++   
Sbjct: 49  D------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDISIDNG 101

Query: 380 YMQT 383
               
Sbjct: 102 NEDL 105

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.7 bits (143), Expect = 4e-11
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 28/101 (27%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKA 312
            +  A + G  +  V +L            NG ++          LH AA+NGH ++VK 
Sbjct: 27  KLLEAARAGQDDE-VRIL----------MANGADVAAKDKNGSTPLHLAARNGHLEVVKL 75

Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
           ++E  G +      V   D+ G T   ++  +G+  +   L
Sbjct: 76  LLEA-GAD------VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
          D    L  AA++G  +   +       L+         +  G TPLH AAR G L     
Sbjct: 23 DLGKKLLEAARAGQDDE-VR------ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 75

Query: 95 LVD 97
          L++
Sbjct: 76 LLE 78

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 23/83 (27%)

Query: 49  AAKSGHGEITAKIAQYYPFLINK---TNNQGDTPLHCAARAGKLNTATALVDFAKHIPST 105
            +   H   ++        L+ +     +     L  AARAG+ +    L+         
Sbjct: 1   GSSHHHHHHSS-------GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILM--------- 44

Query: 106 SQ-APVDLLRMENAMGNTALHEA 127
           +  A V     ++  G+T LH A
Sbjct: 45  ANGADVA---AKDKNGSTPLHLA 64

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 77.4 bits (191), Expect = 5e-17
 Identities = 22/194 (11%), Positives = 49/194 (25%), Gaps = 32/194 (16%)

Query: 193 IEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLG-----VCYLLE 247
           + +   +S A  +G  +    +              + L    +  N         +L+ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 248 ----VNGYSALKKNKETLYPIHLACKNGHANV-----MVELLKEWRCPSLFVTDNGCNIL 298
               +    +  K   T        + G  ++     + ++  E       +      ++
Sbjct: 64  KGADIK---SRTKEGTT--LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

Query: 299 HFAAKNGHAD------MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
                N   D      + K I    G        +   D+ G T L           +  
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQ------LLIKDKWGLTALEFVKRCQKPIALKM 172

Query: 353 LLRYGRSNPDLKNK 366
           +  Y     +LK  
Sbjct: 173 MEDYI-KKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 17/167 (10%), Positives = 36/167 (21%), Gaps = 21/167 (12%)

Query: 226 SGKSPLQVATKKRNLG-VCYLLEVNGYSALKKNKETL--YPIHLACKNGHANVMVELLKE 282
           S    +  A           L E          K  +    +          +    L  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKI-SMFLIN 63

Query: 283 WRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP-----GTNMTMDEVVNKMDEDGNTP 337
                   T  G  +     + G  D+             G +      +  + +     
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD------ITALYKPYKIV 117

Query: 338 LHLAALHGHS------QVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
           +     +          +   +         +K+K G+TA +   R 
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFL-----INKTNNQGDTPLHCAARAGKLNTATAL 95
           +G++L     + G  +IT        FL     I          +        ++    +
Sbjct: 74  EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN-EM 132

Query: 96  VDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           +   K I S S   +    +++  G TAL   
Sbjct: 133 IPLYKLIFSQSGLQLL---IKDKWGLTALEFV 161

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 70/221 (31%)

Query: 10  FEAAIRGNIDDF--LFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF 67
             AA+ G  +DF  LF            +K     S++L+   ++ + E   KI+    F
Sbjct: 11  SAAAMLGTYEDFLELFE-------KGYEDKESVLKSNILYDVLRNNNDEARYKISM---F 60

Query: 68  LI------NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLR------M 115
           LI           +G T      + G  +      +  K            L        
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGT-TELCKI----------FLEKGADITA 109

Query: 116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVA 175
                   + +         ++   +  + +   +    S     +        +     
Sbjct: 110 LYKPYKIVVFKN--------IFNYFVDENEMIPLYKLIFSQS--GLQ-------LLI--- 149

Query: 176 IAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR 216
                          K+    + L           L+ +  
Sbjct: 150 ---------------KDKWGLTALEFVKRCQKPIALKMMED 175

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.4 bits (188), Expect = 3e-16
 Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 24/193 (12%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--------SSGKSPLQVATKKRNLGV 242
            + + ++ L  A   G+T+++E++       +           +G SPL +A       +
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFL-------LQLGVPVNDKDDAGWSPLHIAASAGXDEI 88

Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAA 302
              L V G      N+    P+H A       +   +L E               +H AA
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI-AVMLLEGGANPDAKDHYDATAMHRAA 147

Query: 303 KNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD 362
             G+  MV  ++     +       N  D +GNTPLHLA      +    L+  G ++  
Sbjct: 148 AKGNLKMVHILLF-YKAS------TNIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIY 199

Query: 363 LKNKQGMTAYKMA 375
           ++NK+  T  ++A
Sbjct: 200 IENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.2 bits (177), Expect = 9e-15
 Identities = 39/248 (15%), Positives = 74/248 (29%), Gaps = 37/248 (14%)

Query: 40  TDGSSLLHVAAKSGHGEITAKIAQYYPFL-----INKTNNQGDTPLHCAARAGKLNTATA 94
                + ++A      E+     +    L       +T+    T LH A  AG       
Sbjct: 5   VSNIMICNLAYSGKLDEL----KER--ILADKSLATRTDQDSRTALHWACSAGHTEIVEF 58

Query: 95  LVDFAKHIPSTSQ-APVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYF 153
           L+             PV+    ++  G + LH A                    +     
Sbjct: 59  LL---------QLGVPVN---DKDDAGWSPLHIA--------ASAGXDEIVKALLVKGAH 98

Query: 154 LSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEY 213
           ++         +      +   IA  L+         K+  D + +  A   GN  ++  
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHI 157

Query: 214 IL-RSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH 272
           +L     + I  + G +PL +A  +  +     L   G S   +NKE   P+ +A     
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG-- 215

Query: 273 ANVMVELL 280
              ++   
Sbjct: 216 -LGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.7 bits (173), Expect = 3e-14
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 29/140 (20%)

Query: 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAK 303
           ++     +   +LA       +  E +            +              LH+A  
Sbjct: 1   MEGCVSNIMICNLAYSGKLDEL-KERI----------LADKSLATRTDQDSRTALHWACS 49

Query: 304 NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDL 363
            GH ++V+ ++++ G        VN  D+ G +PLH+AA  G  ++V ALL  G ++ + 
Sbjct: 50  AGHTEIVEFLLQL-GVP------VNDKDDAGWSPLHIAASAGXDEIVKALLVKG-AHVNA 101

Query: 364 KNKQGMTAYKMALREYYMQT 383
            N+ G T    A  +   + 
Sbjct: 102 VNQNGCTPLHYAASKNRHEI 121

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 38/208 (18%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWS----------SGKSPLQVATKKRNL 240
             + +    +LA      ++ E IL         +            ++ L  A    + 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERIL---------ADKSLATRTDQDSRTALHWACSAGHT 53

Query: 241 GVCYLL-----EVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGC 295
            +   L      VN      K+     P+H+A   G   + V+ L         V  NGC
Sbjct: 54  EIVEFLLQLGVPVN-----DKDDAGWSPLHIAASAGXDEI-VKALLVKGAHVNAVNQNGC 107

Query: 296 NILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
             LH+AA     ++   ++E  G N       +  D    T +H AA  G+ ++V+ LL 
Sbjct: 108 TPLHYAASKNRHEIAVMLLE-GGAN------PDAKDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 356 YGRSNPDLKNKQGMTAYKMALREYYMQT 383
           Y  ++ ++++ +G T   +A  E  ++ 
Sbjct: 161 YK-ASTNIQDTEGNTPLHLACDEERVEE 187

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 11/168 (6%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYIL-RSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVN 249
           K+    SPL +A   G  ++++ +L +         +G +PL  A  K    +  +L   
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128

Query: 250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM 309
           G +   K+      +H A   G+  + V +L  ++  +      G   LH A      + 
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKM-VHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187

Query: 310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
            K ++    +       +   +++  TPL +A   G   ++   L  G
Sbjct: 188 AKFLVTQGAS-------IYIENKEEKTPLQVAK--GGLGLILKRLAEG 226

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 73.2 bits (181), Expect = 5e-16
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 29/119 (24%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKA 312
            +  A + G  +  V +L            NG ++          L+ A  +GH ++V+ 
Sbjct: 17  KLLEAARAGQDDE-VRIL----------MANGADVNAKDEYGLTPLYLATAHGHLEIVEV 65

Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
           +++  G +      VN +D  G TPLHLAA  GH ++   LL++G ++ + ++K G TA
Sbjct: 66  LLKN-GAD------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTA 116

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.4 bits (166), Expect = 6e-14
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 38/145 (26%)

Query: 227 GKSPLQVATKKRNLGVCYLL-----EVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
               L  A +        +L     +VN      K++  L P++LA  +GH  + VE+L 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVN-----AKDEYGLTPLYLATAHGHLEI-VEVL- 66

Query: 282 EWRCPSLFVTDNGCNI----------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD 331
                      NG ++          LH AA  GH ++ + +++  G +      VN  D
Sbjct: 67  ---------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GAD------VNAQD 110

Query: 332 EDGNTPLHLAALHGHSQVVYALLRY 356
           + G T   ++  +G+  +   L + 
Sbjct: 111 KFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 66.6 bits (164), Expect = 1e-13
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 11/82 (13%)

Query: 293 NGCNI---LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
           +G ++   L  AA+ G  D V+ ++   G +      VN  DE G TPL+LA  HGH ++
Sbjct: 10  HGSDLGKKLLEAARAGQDDEVRILMAN-GAD------VNAKDEYGLTPLYLATAHGHLEI 62

Query: 350 VYALLRYGRSNPDLKNKQGMTA 371
           V  LL+ G ++ +  +  G T 
Sbjct: 63  VEVLLKNG-ADVNAVDAIGFTP 83

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 34/98 (34%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
            G + L++A   GH EI  +       L+      N  +  G TPLH AA  G L  A  
Sbjct: 46  YGLTPLYLATAHGHLEI-VE------VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98

Query: 95  LVDF-----AKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L+       A+                +  G TA   +
Sbjct: 99  LLKHGADVNAQ----------------DKFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTA 371
              +    D    L  AA  G    V  L+  G ++ + K++ G+T 
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTP 50

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 34/98 (34%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           D    L  AA++G  +   +       L+      N  +  G TPL+ A   G L     
Sbjct: 13  DLGKKLLEAARAGQDDE-VR------ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV 65

Query: 95  LVDF-----AKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           L+       A                 +A+G T LH A
Sbjct: 66  LLKNGADVNAV----------------DAIGFTPLHLA 87

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 13/58 (22%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTA 92
            G + LH+AA  GH EI A+       L+      N  +  G T    +   G  + A
Sbjct: 79  IGFTPLHLAAFIGHLEI-AE------VLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 72.3 bits (178), Expect = 8e-15
 Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 34/146 (23%)

Query: 244 YLLEVNGYSALKKNKETLYPI---HLACKNGHANVMVELLKEWRCPSLFVTDNGCNI--- 297
            +L     S  K  +  L P+     A   G   V V+                 +    
Sbjct: 3   SVLR-KAGSPRKARRARLNPLVLLLDAALTGELEV-VQQA----------VKEMNDPSQP 50

Query: 298 -------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
                  LH A    +  +V  +I   G N      VN  D  G TPLH AA    + + 
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITA-GAN------VNSPDSHGWTPLHCAASCNDTVIC 103

Query: 351 YALLRYGRSNPDLKN-KQGMTAYKMA 375
            AL+++G +         G TA++  
Sbjct: 104 MALVQHG-AAIFATTLSDGATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 32/212 (15%), Positives = 53/212 (25%), Gaps = 76/212 (35%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW--------SSGKSPLQVATKKRNLGV 242
             +     L  A   G  +V++         +            G + L  A    N  +
Sbjct: 17  ARLNPLVLLLDAALTGELEVVQQA-------VKEMNDPSQPNEEGITALHNAICGANYSI 69

Query: 243 C-YLLE----VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI 297
             +L+     VN       +     P+H A       +    L            +G  I
Sbjct: 70  VDFLITAGANVN-----SPDSHGWTPLHCAASCNDTVI-CMAL----------VQHGAAI 113

Query: 298 -----------LHFAA--KNGHADMVKAIIEIPGTNM-----------------TMDEV- 326
                             + G+AD    + ++   +M                   DE+ 
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAEFGDELS 172

Query: 327 --------VNKMDEDGNTPLHLAALHGHSQVV 350
                   V + D    T    AALHG    V
Sbjct: 173 FREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 23/93 (24%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLNTATA 94
           +G + LH A    +  I         FLI      N  ++ G TPLHCAA         A
Sbjct: 53  EGITALHNAICGANYSIVD-------FLITAGANVNSPDSHGWTPLHCAASCNDTVICMA 105

Query: 95  LVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           LV               +     + G TA  + 
Sbjct: 106 LVQHG----------AAIFATTLSDGATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 24/97 (24%)

Query: 37  KVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLI------NKTNNQGDTPLHCAARAGKLN 90
           +   +   LL  AA +G  E+           +      ++ N +G T LH A      +
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQ-------QAVKEMNDPSQPNEEGITALHNAICGANYS 68

Query: 91  TATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
               L+           A V+     ++ G T LH A
Sbjct: 69  IVDFLITAG--------ANVN---SPDSHGWTPLHCA 94

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 25/130 (19%), Positives = 37/130 (28%), Gaps = 41/130 (31%)

Query: 12  AAIRGNID--DFLFS---DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP 66
           A    N    DFL +   ++   D         + G + LH AA      I         
Sbjct: 61  AICGANYSIVDFLITAGANVNSPD---------SHGWTPLHCAASCNDTVI-CM------ 104

Query: 67  FLIN-------KTNNQGDTPLHCAARA--GKLNTATALVDFAKHIPSTSQAPVDLLRMEN 117
            L+         T + G T          G  + AT L D         +  + L    N
Sbjct: 105 ALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD--------VEQSMGL---MN 153

Query: 118 AMGNTALHEA 127
           +    AL + 
Sbjct: 154 SGAVYALWDY 163

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 69.8 bits (171), Expect = 8e-14
 Identities = 41/236 (17%), Positives = 69/236 (29%), Gaps = 57/236 (24%)

Query: 195 DKSPLSLAIEMGNTDVLEYILRSLPS---------GISWSSGKSPLQVA----TKKRNLG 241
           ++  L   +  G+ D LE +L  L +             S+GK+ L  A    +  RN  
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 242 VCYLLEVNGYSALK----------KNKETLYPIHLACKNGHANVMVELL----------- 280
           +  LL++   +                     +H+A +    +  VELL           
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY-VELLVEKGADVHAQA 123

Query: 281 ---KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTP 337
                           G   L  AA      +V  + E           + + D  GNT 
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD----LRRQDSRGNTV 179

Query: 338 LHLAALHGH---------SQVVYALLRYG------RSNPDLKNKQGMTAYKMALRE 378
           LH                +++   LL          +   L N  G++   MA + 
Sbjct: 180 LHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 27/165 (16%)

Query: 227 GKSPLQVATKKRNLGVCYLL-----EVN-----GYSALKKNKETLY----PIHLACKNGH 272
           G++ L +A ++R      LL     +V+      +   K      Y    P+ LA     
Sbjct: 93  GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 273 ANVMVELL--KEWRCPSLFVTDN-GCNILHFAAKNGH---------ADMVKAIIEIPGTN 320
            ++ V  L     +   L   D+ G  +LH                  M   ++      
Sbjct: 153 PHI-VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211

Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKN 365
                +   ++ DG +PL +AA  G   +   ++R   ++    +
Sbjct: 212 FPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 47/206 (22%)

Query: 24  SDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEIT-------------AKIAQYYPFLIN 70
           +   ++ ++  F  V   G + LH+A +                    A+   + P    
Sbjct: 75  TGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEG 134

Query: 71  KTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFM 130
                G+ PL  AA   + +    L               D LR +++ GNT LH  +  
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLT-------ENGHKQAD-LRRQDSRGNTVLHALV-- 184

Query: 131 LGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCC 190
                         +      +      L +    K     +L A+              
Sbjct: 185 ----------AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL-------------- 220

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILR 216
            N +  SPL +A + G   + ++I+R
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 32/108 (29%)

Query: 12  AAIRGNID--DFLFS------DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHG--EITAKI 61
           AA         +L        D+ +QD         + G+++LH          E T  +
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQD---------SRGNTVLHALVAIADNTRENTKFV 197

Query: 62  AQYYPFLINK-------------TNNQGDTPLHCAARAGKLNTATALV 96
            + Y  L+ K              NN G +PL  AA+ GK+     ++
Sbjct: 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 283 WRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA 342
            + P     +     LH A ++     +  I++    N      ++K    G+T LH   
Sbjct: 158 EKIPLANGHEPDETALHLAVRSVDRTSL-HIVDFLVQN---SGNLDKQTGKGSTALHYCC 213

Query: 343 LHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR 377
           L  +++ +  LLR   ++ ++ N+ G T   +A R
Sbjct: 214 LTDNAECLKLLLRGK-ASIEIANESGETPLDIAKR 247

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 262 YPIHLACKNGHAN--VMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGT 319
             +HLA ++       +V+ L +        T  G   LH+     +A+ +K ++     
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-KA 229

Query: 320 NMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
           +      +   +E G TPL +A    H      LL    S 
Sbjct: 230 S------IEIANESGETPLDIAKRLKHEHCE-ELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 194 EDKSPLSLAIEMGNTDVLEYILRSLPSGISW----SSGKSPLQVATKKRNLGVCYLLEVN 249
            D++ L LA+   +   L  +   + +  +       G + L       N     LL   
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
             S    N+    P+ +A +  H +   ELL +   
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHC-EELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 13/90 (14%)

Query: 40  TDGSSLLHVAAKSGHGEITAKI--AQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
               + LH+A +S        +         ++K   +G T LH             L+ 
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL- 225

Query: 98  FAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
                    +A +++    N  G T L  A
Sbjct: 226 -------RGKASIEIA---NESGETPLDIA 245

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.5 bits (141), Expect = 8e-10
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-----GCNILHFAAKNGHAD 308
            ++       +  A  N     ++E     +     +           +LH A K  +  
Sbjct: 145 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 204

Query: 309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQG 368
            +  +++    N      ++    DGNT LH AAL+     +  LL+   +     N+ G
Sbjct: 205 SL-PLVDFIIQNGGH---LDAKAADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAG 259

Query: 369 MTAYKMALR 377
            TA  +A +
Sbjct: 260 ETALDIARK 268

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 10/101 (9%)

Query: 262 YPIHLACKNGHAN--VMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGT 319
             +HLA K  +     +V+ + +          +G   LH+AA     D +K +++    
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRA 250

Query: 320 NMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
                  V  ++E G T L +A    H +    LL   ++ 
Sbjct: 251 L------VGTVNEAGETALDIARKKHHKECE-ELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 5/132 (3%)

Query: 155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYI 214
             P          ++++ L A A       P         ++  L LA+++ N   L  +
Sbjct: 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 209

Query: 215 LRSLPSG--ISW--SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN 270
              + +G  +    + G + L  A          LL          N+     + +A K 
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 269

Query: 271 GHANVMVELLKE 282
            H     ELL++
Sbjct: 270 HHKEC-EELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 40  TDGSSLLHVAAKSGHGEITAKIAQY---YPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
                +LH+A K  +      +  +       ++     G+T LH AA   + +    L+
Sbjct: 188 APEELVLHLAVKVANQASLP-LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 97  DFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
                     +A V  +   N  G TAL  A
Sbjct: 247 --------KGRALVGTV---NEAGETALDIA 266

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 1e-09
 Identities = 68/453 (15%), Positives = 124/453 (27%), Gaps = 165/453 (36%)

Query: 3   EVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHI-------------FEKVLTDGSSLLHVA 49
            V + A+ +     ++ D   S + K+++ HI             F  +L+    ++   
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 50  AKSGHGEITAKIAQYYPFLINKTNNQ-----GDTPLHCAARAGKLNTATALVDFAKHIPS 104
            +             Y FL++    +       T ++   R    N       FAK+   
Sbjct: 83  VEEVL-------RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---FAKY-NV 131

Query: 105 TSQAPVDLLR---ME-NAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160
           +   P   LR   +E     N  +     +LG         +G +             +A
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDG---VLG---------SGKT------------WVA 167

Query: 161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS 220
           +D                  V L  K+ C                            +  
Sbjct: 168 LD------------------VCLSYKVQCK---------------------------MDF 182

Query: 221 GISW-SSGK--SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMV 277
            I W +     SP  V    + L   Y ++ N  S    +      IH          + 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSI-----QAELR 235

Query: 278 ELLKEWRCP-SLFVTDN------------GCNILHFAAKNGHADMVKAI------IEIPG 318
            LLK       L V  N             C IL         D + A       ++   
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 319 TNMTMDE-------VVNKMDED-------GNTPLHLAALHGHSQVVYALLRYGRSNPD-- 362
             +T DE        ++   +D        N P  L+       ++   +R G +  D  
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLS-------IIAESIRDGLATWDNW 347

Query: 363 --LKNKQGMTAYKMAL--------REYYMQTSI 385
             +   +  T  + +L        R+ + + S+
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 53/372 (14%), Positives = 95/372 (25%), Gaps = 132/372 (35%)

Query: 1   MEEVLDPAY--FEAAIR-------GNIDDF------LFSDIPKQDLHHI--FEKVLTDGS 43
           +EEVL   Y    + I+            +      L++D      +++   +  L    
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 44  SLLHVAAKSG---HG-------EITAKIAQYYPFLINKTNN-------QGDTPLHCAARA 86
           +LL +         G        +   +   Y                  ++P       
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 87  GKLNT-----ATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSI 141
            KL        T+  D + +I     +    LR    + +      L +L   NV     
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLL--NVQNAKA 258

Query: 142 AGSSLTMAHSYF-LSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPK------------LS 188
                    + F LS   L    T    + + L A     +SLD              L 
Sbjct: 259 W--------NAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 189 CCKNIEDK---------SPLSLAI------EMGNT--------------------DVLE- 212
              +   +         +P  L+I      +   T                    +VLE 
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 213 ------Y----ILRS---LPS---GISWSSGKS--PLQVATKKRNLGVCYLLEVNGYSAL 254
                 +    +      +P+    + W        + V  K              YS +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-----------YSLV 417

Query: 255 KKN-KETLYPIH 265
           +K  KE+   I 
Sbjct: 418 EKQPKESTISIP 429

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
            +    L  A             E    N      VN+ D  G  PLH A + GH+ +  
Sbjct: 233 QDNATPLIQATAANSLLAC----EFLLQNGAN---VNQADSAGRGPLHHATILGHTGLAC 285

Query: 352 ALLRYGRSNPDLKNKQGMTAYKMALR 377
             L+ G ++   ++ +G     +A+ 
Sbjct: 286 LFLKRG-ADLGARDSEGRDPLTIAME 310

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 34/205 (16%), Positives = 61/205 (29%), Gaps = 48/205 (23%)

Query: 181 VSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWS----SGKSPLQVATK 236
              +P      ++   + L  A     +        +  + ++W        +PL  AT 
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244

Query: 237 KRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCN 296
             +L  C  L  NG +  + +     P+H A   GH  +    LK            G +
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK-----------RGAD 293

Query: 297 ILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR- 355
                                         +   D +G  PL +A    ++ +V  LLR 
Sbjct: 294 ------------------------------LGARDSEGRDPLTIAMETANADIV-TLLRL 322

Query: 356 -YGRSNPDLKNKQGMTAYKMALREY 379
              R     + + G   Y    R++
Sbjct: 323 AKMREAEAAQGQAGDETYLDIFRDF 347

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
               +LH A K  +   +  +++    N      ++    DGNT LH AAL+     +  
Sbjct: 170 PEELVLHLAVKVANQASL-PLVDFIIQNGGH---LDAKAADGNTALHYAALYNQPDCLKL 225

Query: 353 LLRYGRSNPDLKNKQGMTAYKMALR 377
           LL+   +     N+ G TA  +A +
Sbjct: 226 LLKGR-ALVGTVNEAGETALDIARK 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-56  Score=403.46  Aligned_cols=358  Identities=23%  Similarity=0.238  Sum_probs=289.0

Q ss_pred             cCCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHH
Q 040887            4 VLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCA   83 (394)
Q Consensus         4 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   83 (394)
                      ...|+||.||..|+++.|+++...+.++    +..+..|.||||+||..|+.+++++|++.++ +++.++..|.||||+|
T Consensus        13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~----~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A   87 (437)
T 1n11_A           13 SGLTPLHVASFMGHLPIVKNLLQRGASP----NVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCA   87 (437)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCS----CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCC----CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHH
Confidence            3479999999999999999955444444    4578899999999999999999999999976 7899999999999999


Q ss_pred             HHcCcHHHHHHHHhhccCCCCCCCCcchhhh----------------------hhhhcCCcHHHHHHHHhCccceeeecc
Q 040887           84 ARAGKLNTATALVDFAKHIPSTSQAPVDLLR----------------------MENAMGNTALHEALFMLGRVNVWRTSI  141 (394)
Q Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~----------------------~~~~~~~t~l~~a~~~~~~~~~~~~~~  141 (394)
                      +..|+.+++++|+++|++++..+....+++.                      ..+..|.||||.|+..+....+..++.
T Consensus        88 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  167 (437)
T 1n11_A           88 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE  167 (437)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999998654332221111                      112334444444444443333322222


Q ss_pred             cCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-
Q 040887          142 AGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-  220 (394)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-  220 (394)
                      .+....        ........++..++..+..+++++|++.+.++. ..+..|.||||+|+..++.+++++|++.+.. 
T Consensus       168 ~g~~~~--------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  238 (437)
T 1n11_A          168 RDAHPN--------AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA  238 (437)
T ss_dssp             TTCCTT--------CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCC--------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            221111        111122346677777788888888888888776 5667788899999999999999998887544 


Q ss_pred             CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHH
Q 040887          221 GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHF  300 (394)
Q Consensus       221 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  300 (394)
                      +..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+... +.++..|.||||+
T Consensus       239 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~  317 (437)
T 1n11_A          239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHV  317 (437)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHH
Confidence            556678999999999999999999999999999999999999999999999999999999987665 7889999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhh
Q 040887          301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY  380 (394)
Q Consensus       301 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~  380 (394)
                      |+..|+.+++++|+++|++       +|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|.+.|+
T Consensus       318 A~~~g~~~~v~~Ll~~gad-------~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          318 ASHYGNIKLVKFLLQHQAD-------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             HHHSSCSHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTC
T ss_pred             HHHcCcHHHHHHHHhcCCC-------CCCCCCCCCCHHHHHHHCChHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCc
Confidence            9999999999999999999       9999999999999999999999999999999 9999999999999999999998


Q ss_pred             cchh
Q 040887          381 MQTS  384 (394)
Q Consensus       381 ~~~~  384 (394)
                      .+..
T Consensus       390 ~~~~  393 (437)
T 1n11_A          390 ISVT  393 (437)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-52  Score=375.43  Aligned_cols=334  Identities=25%  Similarity=0.256  Sum_probs=268.3

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhh--
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLL--  113 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~--  113 (394)
                      +..+.+|.||||+||..|+.++|++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++..+....+++  
T Consensus         8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   86 (437)
T 1n11_A            8 GGGGESGLTPLHVASFMGHLPIVKNLLQRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC   86 (437)
T ss_dssp             -------CCHHHHHHHHTCHHHHHHHHHTTC-CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Confidence            6689999999999999999999999999965 7899999999999999999999999999999999865543322211  


Q ss_pred             --------------------hhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhH
Q 040887          114 --------------------RMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSL  173 (394)
Q Consensus       114 --------------------~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (394)
                                          +..+..|.||||.|+..+....+..++..+....        ........++..++..+.
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--------~~~~~g~t~L~~A~~~g~  158 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--------CMTKKGFTPLHVAAKYGK  158 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--------CCCTTSCCHHHHHHHTTC
T ss_pred             HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--------CCCCCCCCHHHHHHHcCC
Confidence                                1123344455555554444333333332221111        011122356777788888


Q ss_pred             HHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCcc
Q 040887          174 VAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYS  252 (394)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~  252 (394)
                      .+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++.+.. ...+..|.||||+|+..++.+++++|++.|.+
T Consensus       159 ~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  237 (437)
T 1n11_A          159 VRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS  237 (437)
T ss_dssp             HHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            899999999988877 5677889999999999999999999987644 45567789999999999999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC
Q 040887          253 ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE  332 (394)
Q Consensus       253 ~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  332 (394)
                      ++..+..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..|+.+++++|+++|++       ++.++.
T Consensus       238 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~  309 (437)
T 1n11_A          238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-------VDATTR  309 (437)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-------TTCCCS
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-------CCCCCC
Confidence            9999999999999999999999999999987665 77889999999999999999999999999998       999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      .|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+......
T Consensus       310 ~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll  364 (437)
T 1n11_A          310 MGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLL  364 (437)
T ss_dssp             SCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHCChHHHHHHHH
Confidence            9999999999999999999999999 999999999999999999999877654443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.6e-47  Score=331.63  Aligned_cols=289  Identities=17%  Similarity=0.132  Sum_probs=232.4

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCC-CCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLT-DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA   84 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   84 (394)
                      +|+||.|+.+||++.|+++...+.++    +.++. .|+||||+||..|+.++|++|+++|+ +++.++..+.+|++.++
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadv----n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga-~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANV----NFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCC----CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-chhhhccCCCchhHHHH
Confidence            56777777777777777754444444    33443 47777777777777777777777755 56777777777777777


Q ss_pred             HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhh
Q 040887           85 RAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT  164 (394)
Q Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (394)
                      ..+...++..+++.++++           +..+..|.||++.|+..+                                 
T Consensus       101 ~~~~~~~~~~~~~~~~~~-----------~~~d~~g~t~l~~A~~~~---------------------------------  136 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADV-----------NECDFYGFTAFMEAAVYG---------------------------------  136 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCT-----------TCBCTTCCBHHHHHHHTT---------------------------------
T ss_pred             hcccchhhHHhhhccchh-----------hhhccCCCCHHHHHHHcC---------------------------------
Confidence            777777777777777765           344566778888877665                                 


Q ss_pred             hhhhhhhhHHHHHHHHHhcCCCCcc---------ccCCCCCcHHHHHHHcCCHHHHHHHHHh--CCCCCCCCCCCChHHH
Q 040887          165 IKTNIINSLVAIAYFLVSLDPKLSC---------CKNIEDKSPLSLAIEMGNTDVLEYILRS--LPSGISWSSGKSPLQV  233 (394)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~l~~  233 (394)
                              ..++++++++.|.+++.         ..+..|.||||+|+..|+.+++++|++.  .+.+..+..|.++++.
T Consensus       137 --------~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~  208 (337)
T 4g8k_A          137 --------KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH  208 (337)
T ss_dssp             --------CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             --------cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHH
Confidence                    33889999999887753         2355689999999999999999999975  3446777889999998


Q ss_pred             HHhcCC----HHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHH
Q 040887          234 ATKKRN----LGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM  309 (394)
Q Consensus       234 a~~~~~----~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  309 (394)
                      ++..+.    ..++++|++.|++++.++..|.||||+|+..|+.++++.|++..+..++.+|..|+||||+|++.|+.++
T Consensus       209 ~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             HHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence            876544    2688999999999999999999999999999999999999998777779999999999999999999999


Q ss_pred             HHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCc
Q 040887          310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLK  364 (394)
Q Consensus       310 ~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~  364 (394)
                      +++|+++|++       +|.     .+|||+|+..|+.+++++||++| |+++..
T Consensus       289 v~~Ll~~GAd-------~n~-----~~~L~~A~~~~~~~iv~~Ll~~G-A~~d~~  330 (337)
T 4g8k_A          289 AELLCKRGAS-------TDC-----GDLVMTARRNYDHSLVKVLLSHG-AKEDFH  330 (337)
T ss_dssp             HHHHHTTSCS-------STT-----CCHHHHHHHTTCHHHHHHHHHTT-CCC---
T ss_pred             HHHHHHCCCC-------CCC-----CCHHHHHHHcCCHHHHHHHHHCc-CCCCCC
Confidence            9999999998       654     46999999999999999999999 999864

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=9.3e-47  Score=328.08  Aligned_cols=283  Identities=17%  Similarity=0.141  Sum_probs=245.3

Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccC-CCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhh
Q 040887           38 VLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNN-QGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRME  116 (394)
Q Consensus        38 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  116 (394)
                      .+.+|.||||.||+.|+.++|++||++|+ ++|.++. .|+||||+||..|+.++|++|+++|++++           ..
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Ga-dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-----------~~   88 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-----------LR   88 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------CC
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-----------hh
Confidence            44568999999999999999999999976 7888775 59999999999999999999999999974           44


Q ss_pred             hhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCC
Q 040887          117 NAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK  196 (394)
Q Consensus       117 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  196 (394)
                      +..+.++++.+....                  ..                       ..+..+.+.+.+++ ..+..|.
T Consensus        89 ~~~~~~~~~~~~~~~------------------~~-----------------------~~~~~~~~~~~~~~-~~d~~g~  126 (337)
T 4g8k_A           89 KKNGATPFILAAIAG------------------SV-----------------------KLLKLFLSKGADVN-ECDFYGF  126 (337)
T ss_dssp             CTTCCCHHHHHHHHT------------------CH-----------------------HHHHHHHTTTCCTT-CBCTTCC
T ss_pred             ccCCCchhHHHHhcc------------------cc-----------------------hhhHHhhhccchhh-hhccCCC
Confidence            667889999887765                  22                       67778888888887 6888999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCC-----------CCCCCCCCChHHHHHhcCCHHHHHHHHh-cCccccccCCCCCcHH
Q 040887          197 SPLSLAIEMGNTDVLEYILRSLPS-----------GISWSSGKSPLQVATKKRNLGVCYLLEV-NGYSALKKNKETLYPI  264 (394)
Q Consensus       197 ~~l~~a~~~~~~~~~~~ll~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g~~~l  264 (394)
                      ||+++|+..++.+++++|++.+..           ...+..|.||||+|+..|+.+++++|++ .|++++.++..|.+++
T Consensus       127 t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l  206 (337)
T 4g8k_A          127 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  206 (337)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHH
Confidence            999999999999999999997654           1234568999999999999999999985 6999999999999999


Q ss_pred             HHHHHcCC----HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhC-CCCCCcchhhccccCCCCCcHHH
Q 040887          265 HLACKNGH----ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI-PGTNMTMDEVVNKMDEDGNTPLH  339 (394)
Q Consensus       265 ~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~g~t~L~  339 (394)
                      +.++..+.    ..++++|++.+.+. +.++..|.||||+|+..|+.+++++|++. |++       ++.+|.+|+||||
T Consensus       207 ~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-------vn~~d~~G~TpL~  278 (337)
T 4g8k_A          207 IHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-------INDTDSDGKTALL  278 (337)
T ss_dssp             HHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-------TTCBCTTSCBHHH
T ss_pred             HHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-------ccCcCCCCCCHHH
Confidence            98876544    35778888887665 88999999999999999999999999986 566       9999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          340 LAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       340 ~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      +|+..|+.+++++||++| ||++.+     +||++|++.|+.+....+.
T Consensus       279 ~A~~~g~~~iv~~Ll~~G-Ad~n~~-----~~L~~A~~~~~~~iv~~Ll  321 (337)
T 4g8k_A          279 LAVELKLKKIAELLCKRG-ASTDCG-----DLVMTARRNYDHSLVKVLL  321 (337)
T ss_dssp             HHHHTTCHHHHHHHHTTS-CSSTTC-----CHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCC-CCCCCC-----CHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999 988754     6999999999877654443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-46  Score=318.97  Aligned_cols=263  Identities=17%  Similarity=0.167  Sum_probs=236.2

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHhCCCCcccc-cCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhc
Q 040887           41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKT-NNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAM  119 (394)
Q Consensus        41 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~  119 (394)
                      +|.||||.|++.|+.+++++|++.++ +++.. +..|.||||+|+..|+.+++++|+++|++++           ..+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------~~~~~   71 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-----------LRKKN   71 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------CCCTT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-----------ccCCC
Confidence            57899999999999999999999876 56666 7889999999999999999999999998864           34667


Q ss_pred             CCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHH
Q 040887          120 GNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPL  199 (394)
Q Consensus       120 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  199 (394)
                      |.||||.|+..+                  +.                       +++++|++.|.+++ ..+..|.|||
T Consensus        72 g~t~L~~A~~~~------------------~~-----------------------~~v~~Ll~~g~~~~-~~~~~g~t~L  109 (285)
T 1wdy_A           72 GATPFLLAAIAG------------------SV-----------------------KLLKLFLSKGADVN-ECDFYGFTAF  109 (285)
T ss_dssp             CCCHHHHHHHHT------------------CH-----------------------HHHHHHHHTTCCTT-CBCTTCCBHH
T ss_pred             CCCHHHHHHHcC------------------CH-----------------------HHHHHHHHcCCCCC-ccCcccCCHH
Confidence            899999998776                  22                       88999999998887 6788899999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCC-CC----------CCCCCChHHHHHhcCCHHHHHHHHhc-CccccccCCCCCcHHHHH
Q 040887          200 SLAIEMGNTDVLEYILRSLPSG-IS----------WSSGKSPLQVATKKRNLGVCYLLEVN-GYSALKKNKETLYPIHLA  267 (394)
Q Consensus       200 ~~a~~~~~~~~~~~ll~~~~~~-~~----------~~~~~~~l~~a~~~~~~~~~~~L~~~-g~~~~~~~~~g~~~l~~a  267 (394)
                      |+|+..++.+++++|++.+... ..          +..|.||||.|+..++.+++++|++. |++++..+..|.||||+|
T Consensus       110 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  189 (285)
T 1wdy_A          110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA  189 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            9999999999999999976542 22          57789999999999999999999987 999999999999999999


Q ss_pred             HHcCC----HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHh-CCCCCCcchhhccccCCCCCcHHHHHH
Q 040887          268 CKNGH----ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       268 ~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      +..++    .+++++|++.+.+. +.++..|.||||+|+..|+.+++++|++ .|++       ++.+|..|+||||+|+
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-------~~~~~~~g~t~l~~A~  261 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-------INDTDSDGKTALLLAV  261 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-------TTCCCTTSCCHHHHHH
T ss_pred             HHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-------ccccCCCCCcHHHHHH
Confidence            99999    89999999987765 8889999999999999999999999999 7888       9999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCccc
Q 040887          343 LHGHSQVVYALLRYGRSNPDLKNK  366 (394)
Q Consensus       343 ~~~~~~~~~~Ll~~g~ad~~~~~~  366 (394)
                      ..|+.+++++|+++| ++++.+|.
T Consensus       262 ~~~~~~i~~~Ll~~G-a~~~~~d~  284 (285)
T 1wdy_A          262 ELKLKKIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             HTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred             HcCcHHHHHHHHHcC-CCCCcccc
Confidence            999999999999999 99998874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.5e-47  Score=332.53  Aligned_cols=295  Identities=24%  Similarity=0.248  Sum_probs=245.8

Q ss_pred             CCHHHHHHHHhccchhhhhccCC-ccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHH
Q 040887            5 LDPAYFEAAIRGNIDDFLFSDIP-KQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCA   83 (394)
Q Consensus         5 ~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   83 (394)
                      ..++||.||..|+.+.++..... +.++    +.+|..|.||||+||..|+.+++++|++.|. +++.++..|.||||+|
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNC----HASDGRKSTPLHLAAGYNRVRIVQLLLQHGA-DVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTC----CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHH
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCc----ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCcHHHHH
Confidence            36789999999999998884433 3333    6678889999999999999999999999865 7888999999999999


Q ss_pred             HHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhh
Q 040887           84 ARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDD  163 (394)
Q Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (394)
                      +..|+.+++++|+++|++++           ..+..|.||||.|+..+                  +.            
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~~-----------~~~~~g~t~L~~A~~~~------------------~~------------  137 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACVN-----------AMDLWQFTPLHEAASKN------------------RV------------  137 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT-----------CCCTTCCCHHHHHHHTT------------------CH------------
T ss_pred             HHCCCHHHHHHHHHCCCCCC-----------CCCCCCCCHHHHHHHcC------------------CH------------
Confidence            99999999999999998864           44667889999998766                  22            


Q ss_pred             hhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHH
Q 040887          164 TIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVC  243 (394)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~  243 (394)
                                 +++++|++.|.++. ..+..|.+|+++++..+..+.+.+....           .++..++..+....+
T Consensus       138 -----------~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  194 (351)
T 3utm_A          138 -----------EVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFKG-----------HSLLQAAREADLAKV  194 (351)
T ss_dssp             -----------HHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHHH-----------HHHHHHHHTTCHHHH
T ss_pred             -----------HHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhcc-----------cHHHHHHHhccHHHH
Confidence                       88999999998887 5777889999988887777777776653           466777788888777


Q ss_pred             HHHHhcCccccccCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q 040887          244 YLLEVNGYSALKKNKETLYPIHLACKN---GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN  320 (394)
Q Consensus       244 ~~L~~~g~~~~~~~~~g~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  320 (394)
                      ..++..+......+..|.||||+|+..   +..+++++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++ 
T Consensus       195 ~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-  272 (351)
T 3utm_A          195 KKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-  272 (351)
T ss_dssp             HHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            776666665556778889999999998   5578889998887665 77888999999999999999999999999988 


Q ss_pred             CcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHh
Q 040887          321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR  377 (394)
Q Consensus       321 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~  377 (394)
                            ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|..
T Consensus       273 ------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          273 ------MNALDSLGQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             ------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHSCH
T ss_pred             ------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCChhhhhhH
Confidence                  8999999999999999999999999999998 8999999999999998844

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.8e-46  Score=314.04  Aligned_cols=262  Identities=18%  Similarity=0.154  Sum_probs=196.2

Q ss_pred             cCCHHHHHHHHhccchhhhhccCCcc-------chhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCC
Q 040887            4 VLDPAYFEAAIRGNIDDFLFSDIPKQ-------DLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQG   76 (394)
Q Consensus         4 ~~~~~l~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   76 (394)
                      ..+|+||+|+..|+.+.+.......+       -+..-++..|.+|+||||+||..|+.+++++|++.+. +++.+|..|
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~g   92 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW-AVNIITADH   92 (285)
T ss_dssp             ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC-CSCEECTTC
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCC
Confidence            45789999999999877776211110       0122346688899999999999999999999999865 688899999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCC
Q 040887           77 DTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSN  156 (394)
Q Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (394)
                      +||||+|+..|+.+++++|++.|++++                                                     
T Consensus        93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~-----------------------------------------------------  119 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVKILLKHGAQVN-----------------------------------------------------  119 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSS-----------------------------------------------------
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCCC-----------------------------------------------------
Confidence            999999999999999999999888763                                                     


Q ss_pred             cccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHh
Q 040887          157 PTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATK  236 (394)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~  236 (394)
                                                       .++..|.||||+|+..++.+++++|++.+........|.||||+|+.
T Consensus       120 ---------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~  166 (285)
T 3d9h_A          120 ---------------------------------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR  166 (285)
T ss_dssp             ---------------------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHH
T ss_pred             ---------------------------------CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Confidence                                             34456788888888888899999998887665556668899999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhC
Q 040887          237 KRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI  316 (394)
Q Consensus       237 ~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  316 (394)
                      .|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. + .+..|.||||+|+..++.+++++|+++
T Consensus       167 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999987665 4 478899999999999999999999999


Q ss_pred             CCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 040887          317 PGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDL  363 (394)
Q Consensus       317 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~  363 (394)
                      |++       ++.+|..|+||||+|+  ++.+++++|+++.++++..
T Consensus       245 gad-------~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          245 GAD-------TQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             TCC-------TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             CCC-------CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence            988       8999999999999998  4568999999985466543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.6e-45  Score=312.65  Aligned_cols=269  Identities=19%  Similarity=0.141  Sum_probs=185.9

Q ss_pred             hhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCC--CcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchh
Q 040887           35 FEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF--LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDL  112 (394)
Q Consensus        35 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  112 (394)
                      ++.+|.+|.||||+||+.|+.++|++|++.++.  .++.++..|+||||+|+..|+.+++++|+++|++++         
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---------   72 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---------   72 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---------
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence            466899999999999999999999999998763  278999999999999999999999999999999874         


Q ss_pred             hhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccC
Q 040887          113 LRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKN  192 (394)
Q Consensus       113 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (394)
                        ..+..|.||||.|+..+                  +                       .+++++|++.+++......
T Consensus        73 --~~~~~g~tpL~~A~~~~------------------~-----------------------~~~v~~Ll~~~~~~~~~~~  109 (282)
T 1oy3_D           73 --VAERGGHTALHLACRVR------------------A-----------------------HTCACVLLQPRPSHPRDAS  109 (282)
T ss_dssp             --CCCTTSCCHHHHHTTTT------------------C-----------------------HHHHHHHSSSCCSSCCCC-
T ss_pred             --CCCCCCCCHHHHHHHcC------------------C-----------------------cchhHhhhccCCCCchhhH
Confidence              23445666666665443                  1                       1566666666554331100


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCH-HHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887          193 IEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIHLACKNG  271 (394)
Q Consensus       193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~  271 (394)
                         .+.+  .               .........+.++++.+...+.. .....+...+.+++.++..|.||||+|+..|
T Consensus       110 ---~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  169 (282)
T 1oy3_D          110 ---DTYL--T---------------QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK  169 (282)
T ss_dssp             ------------------------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTT
T ss_pred             ---HHHh--h---------------cccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcC
Confidence               0000  0               00011123455666666665544 5666777778889999999999999999999


Q ss_pred             CHHHHHHHHHhcCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHH
Q 040887          272 HANVMVELLKEWRCPSLFVT-DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV  350 (394)
Q Consensus       272 ~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  350 (394)
                      +.+++++|++.+... +..+ ..|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+..|+.+++
T Consensus       170 ~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-------~~~~d~~g~tpL~~A~~~~~~~~v  241 (282)
T 1oy3_D          170 DAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-------PTARMYGGRTPLGSALLRPNPILA  241 (282)
T ss_dssp             CHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-------CcccccCCCCHHHHHHHcCCcHHH
Confidence            999999999998776 5565 4599999999999999999999999999       999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          351 YALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       351 ~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      ++|+++| ++++.+|..|.||+++|......+..
T Consensus       242 ~~Ll~~g-a~~~~~~~~g~tpl~~a~~~~~~~~~  274 (282)
T 1oy3_D          242 RLLRAHG-APEPEDGGDKLSPCSSSGSDSDSDNR  274 (282)
T ss_dssp             HHHHHTT-CCCCCCC-------------------
T ss_pred             HHHHHcC-CCcCcCCCcccccccccCCccccccc
Confidence            9999999 99999999999999999988765544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.7e-44  Score=303.41  Aligned_cols=244  Identities=19%  Similarity=0.177  Sum_probs=196.8

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHHhCC----------CCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCC
Q 040887           39 LTDGSSLLHVAAKSGHGEITAKIAQYYP----------FLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQA  108 (394)
Q Consensus        39 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  108 (394)
                      ...|.|+||+||..|+.+.+..++..++          ..++..+..|+||||+|+..|+.+++++|++.|++++     
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-----   86 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-----   86 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-----
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----
Confidence            4568999999999999887777766532          2356788999999999999999999999999988763     


Q ss_pred             cchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCc
Q 040887          109 PVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS  188 (394)
Q Consensus       109 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  188 (394)
                                                                                                      
T Consensus        87 --------------------------------------------------------------------------------   86 (285)
T 3d9h_A           87 --------------------------------------------------------------------------------   86 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHH
Q 040887          189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLA  267 (394)
Q Consensus       189 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a  267 (394)
                       .++..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++..+ .|.||||+|
T Consensus        87 -~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A  164 (285)
T 3d9h_A           87 -IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEA  164 (285)
T ss_dssp             -EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHH
T ss_pred             -CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHH
Confidence             3455789999999999999999999997644 6677889999999999999999999999999987654 599999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCH
Q 040887          268 CKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS  347 (394)
Q Consensus       268 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  347 (394)
                      +..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.|++       ++. +..|+||||+|+..++.
T Consensus       165 ~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~-~~~g~t~L~~A~~~~~~  235 (285)
T 3d9h_A          165 ARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD-------VNQ-GKGQDSPLHAVVRTASE  235 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-------TTC-CBTTBCHHHHHHHTTCH
T ss_pred             HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-------CCC-CCCCCCHHHHHHHcCCH
Confidence            9999999999999987765 88999999999999999999999999999998       774 88999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887          348 QVVYALLRYGRSNPDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       348 ~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~  379 (394)
                      +++++|+++| +|++.+|..|+|||++|+.+.
T Consensus       236 ~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~  266 (285)
T 3d9h_A          236 ELACLLMDFG-ADTQAKNAEGKRPVELVPPES  266 (285)
T ss_dssp             HHHHHHHHTT-CCTTCCCTTSCCGGGGSCTTS
T ss_pred             HHHHHHHHCC-CCCCCcCCCCCCHHHHhcCcc
Confidence            9999999999 999999999999999999554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-44  Score=317.82  Aligned_cols=279  Identities=17%  Similarity=0.178  Sum_probs=223.3

Q ss_pred             HHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCccccc-CCCCCHHHHHHHc
Q 040887            8 AYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTN-NQGDTPLHCAARA   86 (394)
Q Consensus         8 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~   86 (394)
                      .+..+...|+++.++...         ....+..|.||||+||..|. +++++|+..   +++..| ..|+||||+|+..
T Consensus        69 ~~~~~~~~g~~~~~~~~~---------~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~  135 (373)
T 2fo1_E           69 YGNGNDFLGDFNHTNLQI---------PTEPEPESPIKLHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIASN  135 (373)
T ss_dssp             ----------------------------------CCCHHHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHHCT
T ss_pred             cCCCCCcccccccccccc---------ccCCCCCCccHHHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHHHC
Confidence            345666777777776621         23467889999999999554 788888653   678888 7899999999999


Q ss_pred             CcHHHHHHHH--------hhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcc
Q 040887           87 GKLNTATALV--------DFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPT  158 (394)
Q Consensus        87 ~~~~~v~~Ll--------~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (394)
                      |+.+++++|+        +.|++++           ..|..|.||||.|+..+                  +.       
T Consensus       136 g~~~~v~~Ll~~~~~~ll~~ga~vn-----------~~d~~g~TpL~~A~~~g------------------~~-------  179 (373)
T 2fo1_E          136 SSAEKSEDLIVHEAKECIAAGADVN-----------AMDCDENTPLMLAVLAR------------------RR-------  179 (373)
T ss_dssp             TCCSCCTTHHHHHHHHHHHTCCCTT-----------CCCTTSCCHHHHHHHHT------------------CH-------
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCc-----------CCCCCCCCHHHHHHHcC------------------hH-------
Confidence            9988877776        7898874           44667999999998876                  22       


Q ss_pred             cchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhC----CCCCCCCCCCChHHHH
Q 040887          159 LAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSL----PSGISWSSGKSPLQVA  234 (394)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~----~~~~~~~~~~~~l~~a  234 (394)
                                      +++++|++.|.+++ ..+..|.||||+|+..|+.+++++|++.+    ..+..+..|.||||+|
T Consensus       180 ----------------~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A  242 (373)
T 2fo1_E          180 ----------------RLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  242 (373)
T ss_dssp             ----------------HHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             ----------------HHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence                            89999999999987 67888999999999999999999999864    5677788999999999


Q ss_pred             HhcC---CHHHHHHHHhcCccccc--------cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHH
Q 040887          235 TKKR---NLGVCYLLEVNGYSALK--------KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAK  303 (394)
Q Consensus       235 ~~~~---~~~~~~~L~~~g~~~~~--------~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  303 (394)
                      +..+   +.+++++|++.|++++.        .+..|.||||+|+..|+.+++++|++.++..++.+|..|.||||+|+.
T Consensus       243 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~  322 (373)
T 2fo1_E          243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ  322 (373)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred             HHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHH
Confidence            9988   67999999999999876        567899999999999999999999998867779999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 040887          304 NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN  360 (394)
Q Consensus       304 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad  360 (394)
                      .|+.+++++|+++|++       ++.+|..|+||||+|+.+|+.+++++|++++ ++
T Consensus       323 ~g~~~iv~~Ll~~gad-------~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~-a~  371 (373)
T 2fo1_E          323 EGRIEVVMYLIQQGAS-------VEAVDATDHTARQLAQANNHHNIVDIFDRCR-PE  371 (373)
T ss_dssp             HTCHHHHHHHHHTTCC-------SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             cCCHHHHHHHHHcCCC-------ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-cc
Confidence            9999999999999999       9999999999999999999999999999998 54

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-43  Score=300.50  Aligned_cols=262  Identities=17%  Similarity=0.127  Sum_probs=234.3

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhc-CCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKV-LTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA   84 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   84 (394)
                      +++|+.|+..|+++.++++...+.++    +.. +..|.||||+||..|+.+++++|++.+. +++..+..|.||||+|+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANV----NFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCc----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHH
Confidence            68999999999999999955555554    334 7889999999999999999999999965 78999999999999999


Q ss_pred             HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhh
Q 040887           85 RAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT  164 (394)
Q Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (394)
                      ..|+.+++++|+++|++++           ..+..|.||||.|+..+                  +              
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~-----------~~~~~g~t~L~~A~~~~------------------~--------------  117 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADVN-----------ECDFYGFTAFMEAAVYG------------------K--------------  117 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-----------CBCTTCCBHHHHHHHTT------------------C--------------
T ss_pred             HcCCHHHHHHHHHcCCCCC-----------ccCcccCCHHHHHHHhC------------------C--------------
Confidence            9999999999999999874           45677999999999776                  2              


Q ss_pred             hhhhhhhhHHHHHHHHHhcCCCCcccc---------CCCCCcHHHHHHHcCCHHHHHHHHHh-C-CCCCCCCCCCChHHH
Q 040887          165 IKTNIINSLVAIAYFLVSLDPKLSCCK---------NIEDKSPLSLAIEMGNTDVLEYILRS-L-PSGISWSSGKSPLQV  233 (394)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~  233 (394)
                               .+++++|++.|.++....         +..|.||||+|+..++.+++++|++. + ..+..+..|.||||.
T Consensus       118 ---------~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  188 (285)
T 1wdy_A          118 ---------VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH  188 (285)
T ss_dssp             ---------HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred             ---------HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence                     289999999999887432         67899999999999999999999986 3 346667889999999


Q ss_pred             HHhcCC----HHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHH
Q 040887          234 ATKKRN----LGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM  309 (394)
Q Consensus       234 a~~~~~----~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  309 (394)
                      |+..+.    .+++++|++.|++++.++..|.||||+|+..|+.+++++|++..+..++.++..|.||||+|+..|+.++
T Consensus       189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i  268 (285)
T 1wdy_A          189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHH
Confidence            999999    8999999999999999999999999999999999999999996666669999999999999999999999


Q ss_pred             HHHHHhCCCCCCcchhhccccC
Q 040887          310 VKAIIEIPGTNMTMDEVVNKMD  331 (394)
Q Consensus       310 ~~~Ll~~~~~~~~~~~~~~~~~  331 (394)
                      +++|+++|++       ++.+|
T Consensus       269 ~~~Ll~~Ga~-------~~~~d  283 (285)
T 1wdy_A          269 AELLCKRGAS-------TDCGD  283 (285)
T ss_dssp             HHHHHHHSSC-------SCCSS
T ss_pred             HHHHHHcCCC-------CCccc
Confidence            9999999999       77765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.6e-45  Score=320.31  Aligned_cols=256  Identities=19%  Similarity=0.172  Sum_probs=221.1

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM  115 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  115 (394)
                      +..|.+|.||||+||..|+.++|++|++.+. +++..|..|.||||+|+..|+.+++++|++.|++++            
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------   80 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGV-SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS------------   80 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC------------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc------------
Confidence            5578889999999999999999999999965 799999999999999999999999999999988642            


Q ss_pred             hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887          116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED  195 (394)
Q Consensus       116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  195 (394)
                                                                                                  +..|
T Consensus        81 ----------------------------------------------------------------------------~~~g   84 (364)
T 3ljn_A           81 ----------------------------------------------------------------------------LWHG   84 (364)
T ss_dssp             ----------------------------------------------------------------------------CBTT
T ss_pred             ----------------------------------------------------------------------------ccCC
Confidence                                                                                        1135


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHh----CCC------------------CCCCCCCCChHHHHHhcC--CHHHHHHHHhcCc
Q 040887          196 KSPLSLAIEMGNTDVLEYILRS----LPS------------------GISWSSGKSPLQVATKKR--NLGVCYLLEVNGY  251 (394)
Q Consensus       196 ~~~l~~a~~~~~~~~~~~ll~~----~~~------------------~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~g~  251 (394)
                      .||||+|+..|+.+++++|++.    +..                  +..+..|.||||+|+..|  +.+++++|++.|+
T Consensus        85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga  164 (364)
T 3ljn_A           85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA  164 (364)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            6777777777777777777765    222                  114567899999999999  8999999999999


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC----CccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhc
Q 040887          252 SALKKNKETLYPIHLACKNGHANVMVELLKEWRCP----SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVV  327 (394)
Q Consensus       252 ~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  327 (394)
                      +++.++..|.||||+|+..|+.+++++|++.++..    ++..+..|.||||+|+..|+.+++++|+++|++       +
T Consensus       165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-------~  237 (364)
T 3ljn_A          165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-------V  237 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-------T
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------C
Confidence            99999999999999999999999999999987762    488899999999999999999999999999999       9


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC------------CcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          328 NKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD------------LKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       328 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~------------~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      +.+|..|+||||+|+..|+.+++++|+++| ++++            ..+..|+||++.|+..+..+......
T Consensus       238 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll  309 (364)
T 3ljn_A          238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKT-DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL  309 (364)
T ss_dssp             TCCCTTSCCHHHHHHHTCCHHHHHHHHHHS-CHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHHcC-CchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHH
Confidence            999999999999999999999999999998 5543            36778899999898888665554443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.2e-45  Score=318.99  Aligned_cols=315  Identities=17%  Similarity=0.147  Sum_probs=222.5

Q ss_pred             CCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887            5 LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA   84 (394)
Q Consensus         5 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   84 (394)
                      ...+|+.|+..|+.+.++........++        .-.++++-+...|+++++++++...      ++..|.||||+|+
T Consensus        37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~g~t~L~~Aa  102 (373)
T 2fo1_E           37 SQHSLLEASYDGYIKRQRNELQHYSLYP--------NPQGYGNGNDFLGDFNHTNLQIPTE------PEPESPIKLHTEA  102 (373)
T ss_dssp             -----------------------------------------------------------------------CCCHHHHHH
T ss_pred             cccccccccCCccccchhhhhhhhcccc--------CccccCCCCCccccccccccccccC------CCCCCccHHHHHh
Confidence            4567888888888887776332222110        1234667788889999999887653      4788999999999


Q ss_pred             HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhh-hcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhh
Q 040887           85 RAGKLNTATALVDFAKHIPSTSQAPVDLLRMEN-AMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDD  163 (394)
Q Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (394)
                      ..+ .+++++|+..  ++           +..+ ..|.||||+|+..+....+..++                       
T Consensus       103 ~~~-~~~~~~L~~~--~~-----------n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll-----------------------  145 (373)
T 2fo1_E          103 AGS-YAITEPITRE--SV-----------NIIDPRHNRTVLHWIASNSSAEKSEDLI-----------------------  145 (373)
T ss_dssp             HSS-SCCCSCCSTT--TT-----------TTCCCSSCCCHHHHHHCTTCCSCCTTHH-----------------------
T ss_pred             cCC-chHHHHhccc--cc-----------cccCCcCCCCHHHHHHHCCCHHHHHHHH-----------------------
Confidence            955 4788888753  32           3345 67999999999887443332211                       


Q ss_pred             hhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHH
Q 040887          164 TIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGV  242 (394)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~  242 (394)
                                ...++.|++.|.+++ ..+..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..|+.++
T Consensus       146 ----------~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~  214 (373)
T 2fo1_E          146 ----------VHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM  214 (373)
T ss_dssp             ----------HHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ----------HHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHH
Confidence                      145677889999988 6788999999999999999999999998654 6677889999999999999999


Q ss_pred             HHHHHhcC---ccccccCCCCCcHHHHHHHcC---CHHHHHHHHHhcCCCCc-------cccCCCchHHHHHHHcCCHHH
Q 040887          243 CYLLEVNG---YSALKKNKETLYPIHLACKNG---HANVMVELLKEWRCPSL-------FVTDNGCNILHFAAKNGHADM  309 (394)
Q Consensus       243 ~~~L~~~g---~~~~~~~~~g~~~l~~a~~~~---~~~~v~~Ll~~~~~~~~-------~~~~~g~t~L~~A~~~~~~~~  309 (394)
                      +++|++.+   .+++..+..|.||||+|+..+   +.+++++|++.+.....       ..+..|.||||+|+..|+.++
T Consensus       215 v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  294 (373)
T 2fo1_E          215 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI  294 (373)
T ss_dssp             HHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred             HHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHH
Confidence            99999988   789999999999999999998   89999999999776521       256789999999999999999


Q ss_pred             HHHHHhCC-CCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          310 VKAIIEIP-GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       310 ~~~Ll~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      +++|++.+ ++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+..|+.+......
T Consensus       295 v~~Ll~~~~~~-------~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll  366 (373)
T 2fo1_E          295 VKYLVGEKGSN-------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFD  366 (373)
T ss_dssp             HHHHHHHSCCC-------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcCCC-------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999887 66       9999999999999999999999999999999 999999999999999999999987765544


Q ss_pred             H
Q 040887          389 Q  389 (394)
Q Consensus       389 ~  389 (394)
                      +
T Consensus       367 ~  367 (373)
T 2fo1_E          367 R  367 (373)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-43  Score=295.69  Aligned_cols=229  Identities=20%  Similarity=0.205  Sum_probs=175.0

Q ss_pred             hhhcCCCCchHHHHHHhcC-------------CHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccC
Q 040887           35 FEKVLTDGSSLLHVAAKSG-------------HGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH  101 (394)
Q Consensus        35 ~~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  101 (394)
                      ++.+|.+|.||||+|+..|             +.+++++|++.++...+..|..|+||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3668999999999999987             899999999998755566789999999999999999999999999887


Q ss_pred             CCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHH
Q 040887          102 IPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLV  181 (394)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  181 (394)
                      ++                                                                              
T Consensus        83 ~~------------------------------------------------------------------------------   84 (253)
T 1yyh_A           83 AN------------------------------------------------------------------------------   84 (253)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            64                                                                              


Q ss_pred             hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCC
Q 040887          182 SLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKE  259 (394)
Q Consensus       182 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~  259 (394)
                              ..+..|.||||+|+..++.+++++|++.+.  .+..+..|.||||+|+..++.+++++|++.|++++.++..
T Consensus        85 --------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~  156 (253)
T 1yyh_A           85 --------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL  156 (253)
T ss_dssp             --------CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTT
T ss_pred             --------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCC
Confidence                    244567889999999999999999998754  4566678999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHH
Q 040887          260 TLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLH  339 (394)
Q Consensus       260 g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~  339 (394)
                      |.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||
T Consensus       157 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~g~tpl~  228 (253)
T 1yyh_A          157 GKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-------RDITDHMDRLPRD  228 (253)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-------ccccccCCCCHHH
Confidence            999999999999999999999997766 88899999999999999999999999999999       9999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcC
Q 040887          340 LAALHGHSQVVYALLRYG  357 (394)
Q Consensus       340 ~A~~~~~~~~~~~Ll~~g  357 (394)
                      +|+..|+.+++++|....
T Consensus       229 ~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          229 IAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHHTTCHHHHHHHHC--
T ss_pred             HHHHcCCHHHHHHHHHHh
Confidence            999999999999999876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.5e-43  Score=291.05  Aligned_cols=227  Identities=22%  Similarity=0.219  Sum_probs=169.7

Q ss_pred             hhhcCCCCchHHHHHHhcCCHHHHHHHHH---hCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcch
Q 040887           35 FEKVLTDGSSLLHVAAKSGHGEITAKIAQ---YYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVD  111 (394)
Q Consensus        35 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  111 (394)
                      ++.+|.+|.||||+||..|+.+++++|++   ..+.+++..|..|.||||+|+..|+.+++++|++.|++++        
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------   73 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM--------   73 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------
Confidence            56789999999999999999999999998   3456899999999999999999999999999999988763        


Q ss_pred             hhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCcccc
Q 040887          112 LLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCK  191 (394)
Q Consensus       112 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  191 (394)
                                                                                                    ..
T Consensus        74 ------------------------------------------------------------------------------~~   75 (241)
T 1k1a_A           74 ------------------------------------------------------------------------------AL   75 (241)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          23


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887          192 NIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG  271 (394)
Q Consensus       192 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~  271 (394)
                      +..|.||||+|+..++.+++++|++.+...                            +.+++..+..|.||||+|+..|
T Consensus        76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~  127 (241)
T 1k1a_A           76 DRHGQTAAHLACEHRSPTCLRALLDSAAPG----------------------------TLDLEARNYDGLTALHVAVNTE  127 (241)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTT----------------------------SCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------------------------cccccccCcCCCcHHHHHHHcC
Confidence            446788999999999999999998875421                            2344555666667777777777


Q ss_pred             CHHHHHHHHHhcCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHH
Q 040887          272 HANVMVELLKEWRCPSLFVT-DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV  350 (394)
Q Consensus       272 ~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  350 (394)
                      +.+++++|++.+.+. +..+ ..|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+..|+.+++
T Consensus       128 ~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v  199 (241)
T 1k1a_A          128 CQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-------VNAQMYSGSSALHSASGRGLLPLV  199 (241)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred             CHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCCHHHH
Confidence            777777777665554 4444 5677777777777777777777777776       677777777777777777777777


Q ss_pred             HHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          351 YALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       351 ~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      ++|+++| ++++.+|..|.||+++|+..|+.+..
T Consensus       200 ~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          200 RTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             HHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence            7777777 77777777777777777777665543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.5e-42  Score=281.63  Aligned_cols=225  Identities=24%  Similarity=0.276  Sum_probs=193.7

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM  115 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  115 (394)
                      +..|.+|.||||+||..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++            
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------   71 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD------------   71 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC------------
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC------------
Confidence            5588999999999999999999999999965 789999999999999999999999999999988763            


Q ss_pred             hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887          116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED  195 (394)
Q Consensus       116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  195 (394)
                                                                                                .++..|
T Consensus        72 --------------------------------------------------------------------------~~~~~g   77 (237)
T 3b7b_A           72 --------------------------------------------------------------------------PKDAEG   77 (237)
T ss_dssp             --------------------------------------------------------------------------CCCTTS
T ss_pred             --------------------------------------------------------------------------CCCCCC
Confidence                                                                                      234467


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhC--CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCH
Q 040887          196 KSPLSLAIEMGNTDVLEYILRSL--PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA  273 (394)
Q Consensus       196 ~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~  273 (394)
                      .||||+|+..|+.+++++|++.+  ..+..+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence            88999999999999999999875  3355667788888888888888888888888888888888899999999999999


Q ss_pred             HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL  353 (394)
Q Consensus       274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  353 (394)
                      +++++|++.+.+. +..+..|.||||+|+..++.+++++|+++|++       ++.+|..|+||||+|+..++...+..|
T Consensus       158 ~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-------~~~~d~~g~t~l~~A~~~~~~~~~~~l  229 (237)
T 3b7b_A          158 DIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-------VTLKNKEGETPLQCASLNSQVWSALQM  229 (237)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------TTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-------CCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999887665 77888899999999999999999999999988       888899999999999998888666655


Q ss_pred             Hh
Q 040887          354 LR  355 (394)
Q Consensus       354 l~  355 (394)
                      ++
T Consensus       230 ~~  231 (237)
T 3b7b_A          230 SK  231 (237)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.5e-42  Score=286.63  Aligned_cols=205  Identities=20%  Similarity=0.212  Sum_probs=177.6

Q ss_pred             HHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCc-c
Q 040887          175 AIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGY-S  252 (394)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~-~  252 (394)
                      +++++|++.|.++....+..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|. +
T Consensus        37 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~  116 (253)
T 1yyh_A           37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD  116 (253)
T ss_dssp             ---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC
T ss_pred             HHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            6666677777766656788899999999999999999999997644 6677889999999999999999999999987 8


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC
Q 040887          253 ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE  332 (394)
Q Consensus       253 ~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  332 (394)
                      ++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.|++       ++.+|.
T Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~  188 (253)
T 1yyh_A          117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-------KDMQNN  188 (253)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCT
T ss_pred             ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCC
Confidence            9999999999999999999999999999987665 88999999999999999999999999999999       999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      .|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+++|+.+......
T Consensus       189 ~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          189 REETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999 999999999999999999999988764443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.4e-41  Score=279.20  Aligned_cols=222  Identities=23%  Similarity=0.305  Sum_probs=205.7

Q ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchh
Q 040887           68 LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLT  147 (394)
Q Consensus        68 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~  147 (394)
                      +++.++..|.||||+|+..|+.+++++|+++|++++                                            
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------------------------------------------   38 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID--------------------------------------------   38 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT--------------------------------------------
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC--------------------------------------------
Confidence            577889999999999999999999999999988764                                            


Q ss_pred             hhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCC
Q 040887          148 MAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSS  226 (394)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~  226 (394)
                                                                ..+..|.||||+|+..|+.+++++|++.+.. +..+..
T Consensus        39 ------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   76 (237)
T 3b7b_A           39 ------------------------------------------TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE   76 (237)
T ss_dssp             ------------------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTT
T ss_pred             ------------------------------------------ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC
Confidence                                                      2344688999999999999999999987654 566788


Q ss_pred             CCChHHHHHhcCCHHHHHHHHhcC-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887          227 GKSPLQVATKKRNLGVCYLLEVNG-YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG  305 (394)
Q Consensus       227 ~~~~l~~a~~~~~~~~~~~L~~~g-~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  305 (394)
                      |.||||.|+..++.+++++|++.| .+++..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+..|
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCC
Confidence            999999999999999999999998 899999999999999999999999999999987766 888999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +.+++++|++.|++       ++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|.||+++|+..+..+..
T Consensus       156 ~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~  226 (237)
T 3b7b_A          156 CVDIAEILLAAKCD-------LHAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSA  226 (237)
T ss_dssp             CHHHHHHHHTTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred             CHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999       9999999999999999999999999999999 99999999999999999999887654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.9e-42  Score=280.38  Aligned_cols=218  Identities=22%  Similarity=0.237  Sum_probs=135.7

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhh
Q 040887           39 LTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENA  118 (394)
Q Consensus        39 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  118 (394)
                      +..+.||||.||+.|+.+.+++|+..++..++..+..|.||||+|+..|+.+++++|++.|++++               
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------   67 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN---------------   67 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC---------------
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC---------------
Confidence            34578999999999999999999999877788889999999999999999999999999887763               


Q ss_pred             cCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcH
Q 040887          119 MGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSP  198 (394)
Q Consensus       119 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  198 (394)
                                                                                             .++..|.||
T Consensus        68 -----------------------------------------------------------------------~~~~~g~t~   76 (231)
T 3aji_A           68 -----------------------------------------------------------------------DKDDAGWSP   76 (231)
T ss_dssp             -----------------------------------------------------------------------CCCTTSCCH
T ss_pred             -----------------------------------------------------------------------CcCCCCCCH
Confidence                                                                                   233346677


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887          199 LSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVE  278 (394)
Q Consensus       199 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~  278 (394)
                      ||+|+..++.+++++|++.+                                ++++.++..|.||||+|+..|+.+++++
T Consensus        77 L~~A~~~~~~~~v~~Ll~~g--------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~  124 (231)
T 3aji_A           77 LHIAASAGXDEIVKALLVKG--------------------------------AHVNAVNQNGCTPLHYAASKNRHEIAVM  124 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT--------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHcC--------------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            77777666666666666543                                3334444444455555555555555555


Q ss_pred             HHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 040887          279 LLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR  358 (394)
Q Consensus       279 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  358 (394)
                      |++.+.+. +..+..|.||||+|+..|+.+++++|++.|++       ++.+|..|+||||+|+..++.+++++|+++| 
T Consensus       125 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-  195 (231)
T 3aji_A          125 LLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-------TNIQDTEGNTPLHLACDEERVEEAKFLVTQG-  195 (231)
T ss_dssp             HHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             HHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-------ccccCCCCCCHHHHHHHCCCHHHHHHHHHCC-
Confidence            54443333 44444455555555555555555555555544       4445555555555555555555555555554 


Q ss_pred             CCCCCcccCCCcHHHHHHhhhhcch
Q 040887          359 SNPDLKNKQGMTAYKMALREYYMQT  383 (394)
Q Consensus       359 ad~~~~~~~g~t~l~~a~~~~~~~~  383 (394)
                      ++++.+|..|.||+++|.+.++.+.
T Consensus       196 a~~~~~~~~g~t~l~~A~~~~~~~i  220 (231)
T 3aji_A          196 ASIYIENKEEKTPLQVAKGGLGLIL  220 (231)
T ss_dssp             CCSCCCCTTSCCHHHHSCHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHhhHHHHH
Confidence            5555555555555555544444333

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=297.62  Aligned_cols=279  Identities=19%  Similarity=0.143  Sum_probs=243.8

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM  115 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  115 (394)
                      ...+..|.|+||.||+.|+.+.+++|+...+.+++.+|..|.||||+|+..|+.+++++|+++|++++           .
T Consensus        18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------~   86 (351)
T 3utm_A           18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-----------A   86 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------C
T ss_pred             eeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------c
Confidence            44667789999999999999999999998788899999999999999999999999999999999874           4


Q ss_pred             hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887          116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED  195 (394)
Q Consensus       116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  195 (394)
                      .+..|.||||.|+..+                  +.                       +++++|++.|.+++ ..+..|
T Consensus        87 ~~~~g~t~L~~A~~~g------------------~~-----------------------~iv~~Ll~~g~~~~-~~~~~g  124 (351)
T 3utm_A           87 KDKGGLVPLHNACSYG------------------HY-----------------------EVTELLLKHGACVN-AMDLWQ  124 (351)
T ss_dssp             CCTTCCCHHHHHHHTT------------------CH-----------------------HHHHHHHHTTCCTT-CCCTTC
T ss_pred             cCCCCCcHHHHHHHCC------------------CH-----------------------HHHHHHHHCCCCCC-CCCCCC
Confidence            4667999999998776                  22                       89999999999887 577889


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHH
Q 040887          196 KSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHAN  274 (394)
Q Consensus       196 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~  274 (394)
                      .||||+|+..++.+++++|++.+.. ...+..+.+|++.++..+..+...+...            ..++..++..+..+
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~  192 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK------------GHSLLQAAREADLA  192 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH------------HHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhc------------ccHHHHHHHhccHH
Confidence            9999999999999999999987544 5667889999999988777766665543            23678889999999


Q ss_pred             HHHHHHHhcCCCCccccCCCchHHHHHHHc---CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887          275 VMVELLKEWRCPSLFVTDNGCNILHFAAKN---GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       275 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  351 (394)
                      .+..++...... ...+..|.||||+|+..   +..+++++|++.|++       ++.+|..|+||||+|+..|+.++++
T Consensus       193 ~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~g~~~~v~  264 (351)
T 3utm_A          193 KVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-------VNEKNKDFMTPLHVAAERAHNDVME  264 (351)
T ss_dssp             HHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-------cCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999998876555 55778899999999999   568999999999999       9999999999999999999999999


Q ss_pred             HHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          352 ALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       352 ~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      +|+++| ++++.+|..|.||||+|+..|+.+......
T Consensus       265 ~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll  300 (351)
T 3utm_A          265 VLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLL  300 (351)
T ss_dssp             HHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999 999999999999999999999887764443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-41  Score=290.87  Aligned_cols=266  Identities=24%  Similarity=0.231  Sum_probs=192.5

Q ss_pred             HHHHhccchhhhhccCCcc-----chhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887           11 EAAIRGNIDDFLFSDIPKQ-----DLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      .++..+..+.++.......     ........++.+|.||||.||..|+.++|++|++.|. +++..+..|.||||+||.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA-DINYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC-CTTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHH
Confidence            4566666666666111111     1111123356678999999999999999999999975 799999999999999999


Q ss_pred             cCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887           86 AGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI  165 (394)
Q Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (394)
                      .|+.+++++|+++|++++.           .+.                                               
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~-----------~~~-----------------------------------------------  104 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQ-----------PDN-----------------------------------------------  104 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTC-----------CCT-----------------------------------------------
T ss_pred             cCCHHHHHHHHHCCCCCCC-----------CCC-----------------------------------------------
Confidence            9999999999999998742           233                                               


Q ss_pred             hhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHH
Q 040887          166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCY  244 (394)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~  244 (394)
                                                  .|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..+..++++
T Consensus       105 ----------------------------~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  156 (299)
T 1s70_B          105 ----------------------------EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ  156 (299)
T ss_dssp             ----------------------------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHH
T ss_pred             ----------------------------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHH
Confidence                                        344555555555555555555554322 333444555555555555554443


Q ss_pred             HHH-hcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 040887          245 LLE-VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTM  323 (394)
Q Consensus       245 ~L~-~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  323 (394)
                      .++ ..+.+++.....+.++++        ..+..++..+.......+..|.||||+|+..|+.+++++|++.|++    
T Consensus       157 ~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d----  224 (299)
T 1s70_B          157 NEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD----  224 (299)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC----
T ss_pred             HHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC----
Confidence            332 334444333222222332        2345566666666566788899999999999999999999999999    


Q ss_pred             hhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887          324 DEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       324 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~  379 (394)
                         ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|.+..
T Consensus       225 ---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          225 ---VNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             ---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCSGG
T ss_pred             ---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHHH
Confidence               9999999999999999999999999999999 999999999999999997654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-40  Score=273.73  Aligned_cols=216  Identities=21%  Similarity=0.242  Sum_probs=177.2

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCC
Q 040887           42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGN  121 (394)
Q Consensus        42 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  121 (394)
                      |+||||+||+.|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.|++++.                 
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------   64 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL-----------------   64 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG-----------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc-----------------
Confidence            789999999999999999999998866677899999999999999999999999998854320                 


Q ss_pred             cHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 040887          122 TALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSL  201 (394)
Q Consensus       122 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  201 (394)
                                                                                        ....+..|.||||+
T Consensus        65 ------------------------------------------------------------------~~~~~~~g~t~L~~   78 (228)
T 2dzn_A           65 ------------------------------------------------------------------DDYPDDSGWTPFHI   78 (228)
T ss_dssp             ------------------------------------------------------------------GGCCCTTSCCHHHH
T ss_pred             ------------------------------------------------------------------cccCCCCCCCHHHH
Confidence                                                                              00133456667666


Q ss_pred             HHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 040887          202 AIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK  281 (394)
Q Consensus       202 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~  281 (394)
                      |+..|+.+++++|++.+.                              +.+++..+..|.||||+|+..|+.+++++|++
T Consensus        79 A~~~~~~~~~~~Ll~~g~------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  128 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPL------------------------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE  128 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSS------------------------------CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCC------------------------------CcccccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence            666666666666655321                              15667778888899999999999999999998


Q ss_pred             hcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHH-hcCCC
Q 040887          282 EWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP-GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL-RYGRS  359 (394)
Q Consensus       282 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~a  359 (394)
                      .+.+. +.++..|.||||+|+..|+.+++++|++.| ++       ++.+|..|+||||+|+..|+.+++++|+ ++| +
T Consensus       129 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a  199 (228)
T 2dzn_A          129 NGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-A  199 (228)
T ss_dssp             TTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC-------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-C
T ss_pred             cCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc-------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-C
Confidence            86655 778888999999999999999999999999 66       8889999999999999999999999999 777 9


Q ss_pred             CCCCcccCCCcHHHHHHhhh
Q 040887          360 NPDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       360 d~~~~~~~g~t~l~~a~~~~  379 (394)
                      +++.+|..|+||+++|.+.+
T Consensus       200 ~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          200 EYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             CSCCBCTTSCBGGGGCSSTT
T ss_pred             CCCccCCCCCcHHHHHHHHH
Confidence            99999999999999997654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.4e-40  Score=275.40  Aligned_cols=191  Identities=20%  Similarity=0.249  Sum_probs=166.9

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHH----h-CCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHH
Q 040887          190 CKNIEDKSPLSLAIEMGNTDVLEYILR----S-LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPI  264 (394)
Q Consensus       190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~----~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l  264 (394)
                      .+|..|.||||+|+..|+.+++++|++    . ...+..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            456678888888888888888888876    2 23455667788888888888888999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCC---CCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC-CCCCcHHHH
Q 040887          265 HLACKNGHANVMVELLKEWRC---PSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD-EDGNTPLHL  340 (394)
Q Consensus       265 ~~a~~~~~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~g~t~L~~  340 (394)
                      |+|+..|+.+++++|++.++.   ..+..+..|.||||+|+..++.+++++|++.|++       ++..+ ..|.||||+
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~~~g~t~L~~  156 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-------IDAVDIKSGRSPLIH  156 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTTCCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-------cccccccCCCcHHHH
Confidence            999999999999999998762   4577889999999999999999999999999999       88888 789999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          341 AALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       341 A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      |+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+......
T Consensus       157 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  203 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLV  203 (241)
T ss_dssp             HHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999 999999999999999999999877654443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.4e-42  Score=285.36  Aligned_cols=227  Identities=17%  Similarity=0.183  Sum_probs=160.6

Q ss_pred             hcCCCCchHHHHHHhcCCHHHHHHHHHhCCCC-------cccccCCCCCHHHHHHHcCcH-HHHHHHHhhccCCCCCCCC
Q 040887           37 KVLTDGSSLLHVAAKSGHGEITAKIAQYYPFL-------INKTNNQGDTPLHCAARAGKL-NTATALVDFAKHIPSTSQA  108 (394)
Q Consensus        37 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~~~~~~~~  108 (394)
                      ++|..+.+||+.||..|+.++|++||+.++.+       ++..+..|.|||+.|+..++. .++++|++.|++++     
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-----   80 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-----   80 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTT-----
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-----
Confidence            36777889999999999999999999876532       455667788888888877664 47788888877764     


Q ss_pred             cchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCc
Q 040887          109 PVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS  188 (394)
Q Consensus       109 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  188 (394)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (269)
T 4b93_B           81 --------------------------------------------------------------------------------   80 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHH
Q 040887          189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLA  267 (394)
Q Consensus       189 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a  267 (394)
                       .++.+|.||||+|+..|+.+++++|++.+.. ...+..|.||++.|+..++.+++++|++.|++++.++..|.||||+|
T Consensus        81 -~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A  159 (269)
T 4b93_B           81 -VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYA  159 (269)
T ss_dssp             -CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             -CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence             3455688888888888888888888886543 55667788899999988888999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCC-
Q 040887          268 CKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH-  346 (394)
Q Consensus       268 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-  346 (394)
                      +..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+++++ 
T Consensus       160 ~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-------~~~~d~~G~TpL~~A~~~~~i  231 (269)
T 4b93_B          160 CSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGAS-------VQVLNKRQRTAVDCAEQNSKI  231 (269)
T ss_dssp             HHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-------SCCCCTTSCCSGGGSCTTCHH
T ss_pred             HHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-------CCCcCCCCCCHHHHHHhCCcH
Confidence            9999999999999987665 88889999999999999999999999999998       89999999999999988775 


Q ss_pred             HHHHHHHHhcC
Q 040887          347 SQVVYALLRYG  357 (394)
Q Consensus       347 ~~~~~~Ll~~g  357 (394)
                      .+++++|...+
T Consensus       232 ~~lL~~l~~~~  242 (269)
T 4b93_B          232 MELLQVVPSCV  242 (269)
T ss_dssp             HHHTTC-----
T ss_pred             HHHHHHHHHhc
Confidence            34444444444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.3e-41  Score=297.28  Aligned_cols=278  Identities=17%  Similarity=0.069  Sum_probs=224.3

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      .|+||+||..|+.+.++++...+.++    +.+|.+|.||||+||..|+.++|++|++.++   +..+..|.||||+|+.
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~g~t~L~~A~~   93 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIETGVSP----TIQNRFGCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIHLAVM   93 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT----TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC---CCCCBTTBCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCc----cccCCCCCcHHHHHHHcCCHHHHHHHHHCCC---CccccCCCCHHHHHHH
Confidence            68999999999999999966555555    6689999999999999999999999999977   3334579999999999


Q ss_pred             cCcHHHHHHHHhh----ccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccch
Q 040887           86 AGKLNTATALVDF----AKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAI  161 (394)
Q Consensus        86 ~~~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (394)
                      .|+.+++++|++.    |++++.                     .. .......+..                       
T Consensus        94 ~g~~~~v~~Ll~~~~~~~~~~~~---------------------~~-~~~~~~~~~~-----------------------  128 (364)
T 3ljn_A           94 ANKTDLVVALVEGAKERGQMPES---------------------LL-NECDEREVNE-----------------------  128 (364)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHH---------------------HH-TCCCCCCEEE-----------------------
T ss_pred             cCCHHHHHHHHHhccccCCCHHH---------------------HH-hhcchHhhhh-----------------------
Confidence            9999999999998    443210                     00 0000000000                       


Q ss_pred             hhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcC
Q 040887          162 DDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMG--NTDVLEYILRSLPS-GISWSSGKSPLQVATKKR  238 (394)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~  238 (394)
                                             .. ....+..|.||||+|+..|  +.+++++|++.+.. +..+..|.||||+|+..|
T Consensus       129 -----------------------~~-~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g  184 (364)
T 3ljn_A          129 -----------------------IG-SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR  184 (364)
T ss_dssp             -----------------------ET-TEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             -----------------------hc-cccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence                                   00 0135667899999999999  99999999997644 667788999999999999


Q ss_pred             CHHHHHHHHhcCcc-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHH
Q 040887          239 NLGVCYLLEVNGYS-----ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAI  313 (394)
Q Consensus       239 ~~~~~~~L~~~g~~-----~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  313 (394)
                      +.+++++|++.|++     ++..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|
T Consensus       185 ~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~L  263 (364)
T 3ljn_A          185 NREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKEL  263 (364)
T ss_dssp             CHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHHH
T ss_pred             CHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhChHHHHHHH
Confidence            99999999999998     9999999999999999999999999999987776 88999999999999999999999999


Q ss_pred             HhCCCCCCcch-----hhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 040887          314 IEIPGTNMTMD-----EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP  361 (394)
Q Consensus       314 l~~~~~~~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~  361 (394)
                      +++|++.....     ......+..++||++.|+..++.+.+..|+..+ ++.
T Consensus       264 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~-~~~  315 (364)
T 3ljn_A          264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK-LDE  315 (364)
T ss_dssp             HHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH-HHH
T ss_pred             HHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH-HHH
Confidence            99987620000     001124567899999999999888888888877 443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=269.05  Aligned_cols=233  Identities=14%  Similarity=0.136  Sum_probs=198.7

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM  115 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  115 (394)
                      ...|..|.||||.||..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|++.|++++.           
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------   70 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGY-DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ-----------   70 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCC-CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh-----------
Confidence            3468889999999999999999999999975 7899999999999999999999999999999877531           


Q ss_pred             hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887          116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED  195 (394)
Q Consensus       116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  195 (394)
                                                                                                ..+..|
T Consensus        71 --------------------------------------------------------------------------~~~~~~   76 (240)
T 3eu9_A           71 --------------------------------------------------------------------------LGGDLN   76 (240)
T ss_dssp             --------------------------------------------------------------------------CBTTTT
T ss_pred             --------------------------------------------------------------------------hcCCcC
Confidence                                                                                      122346


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC-H
Q 040887          196 KSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH-A  273 (394)
Q Consensus       196 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~-~  273 (394)
                      .|||++|+..++.+++++|++.+.. +..+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..+. .
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV  156 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH
Confidence            7888888888888888888886543 5556778899999999999999999999999999999999999999997666 7


Q ss_pred             HHHHHHHHhcCCCCccccC-CCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887          274 NVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA  352 (394)
Q Consensus       274 ~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  352 (394)
                      +++++|++.+.+. +..+. .|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+..|+.+++++
T Consensus       157 ~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~l~~A~~~~~~~~v~~  228 (240)
T 3eu9_A          157 DPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-------VDAQNIKGESALDLAKQRKNVWMINH  228 (240)
T ss_dssp             TTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-------TTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            8888888887766 55665 899999999999999999999999998       89999999999999999999999999


Q ss_pred             HHhcCCCCCCC
Q 040887          353 LLRYGRSNPDL  363 (394)
Q Consensus       353 Ll~~g~ad~~~  363 (394)
                      |++.+ ++...
T Consensus       229 L~~~~-~~~~~  238 (240)
T 3eu9_A          229 LQEAR-QAKGY  238 (240)
T ss_dssp             HHHHC------
T ss_pred             HHHhh-hccCc
Confidence            99998 65543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=277.40  Aligned_cols=224  Identities=25%  Similarity=0.299  Sum_probs=173.5

Q ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhh
Q 040887           70 NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMA  149 (394)
Q Consensus        70 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~  149 (394)
                      ..+|..+.|||+.||..|+.++|++||+.|++.......                                         
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~-----------------------------------------   43 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAED-----------------------------------------   43 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccc-----------------------------------------
Confidence            345777889999999999999999999998753211000                                         


Q ss_pred             hhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCH-HHHHHHHHhCC-CCCCCCCC
Q 040887          150 HSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNT-DVLEYILRSLP-SGISWSSG  227 (394)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~-~~~~~~~~  227 (394)
                                                           .....+..+.|||+.|+..+.. .++++|++.+. .+..+..|
T Consensus        44 -------------------------------------~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G   86 (269)
T 4b93_B           44 -------------------------------------TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG   86 (269)
T ss_dssp             --------------------------------------------------------------------CCCCTTCCCTTS
T ss_pred             -------------------------------------cccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence                                                 0002344677888888876664 47788887654 46778899


Q ss_pred             CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCH
Q 040887          228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA  307 (394)
Q Consensus       228 ~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  307 (394)
                      .||||+|+..|+.+++++|++.|++++.++..|.||+|.|+..++.+++++|++.+.+. +.+|..|.||||+|+..|+.
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCG
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999999999999999999999999999999999999987766 88999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhh
Q 040887          308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY  380 (394)
Q Consensus       308 ~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~  380 (394)
                      +++++|++.|++       +|.++..|+||||+|+..|+.+++++|+++| +|++.+|..|+||||+|++++.
T Consensus       166 ~~v~~Ll~~gad-------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          166 ELVALLLQHGAS-------INASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             GGHHHHHHTTCC-------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHHCCCC-------CCccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCc
Confidence            999999999999       9999999999999999999999999999999 9999999999999999988765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.2e-38  Score=261.96  Aligned_cols=185  Identities=21%  Similarity=0.247  Sum_probs=169.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCC--CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887          194 EDKSPLSLAIEMGNTDVLEYILRSLPS--GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG  271 (394)
Q Consensus       194 ~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~  271 (394)
                      .+.+||+.|+..|+.+.++++++....  ...+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence            467889999999999999988876543  455678899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887          272 HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       272 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  351 (394)
                      +.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.|++       ++.++..|.||||+|+..|+.++++
T Consensus        85 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~  156 (231)
T 3aji_A           85 XDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-------PDAKDHYDATAMHRAAAKGNLKMVH  156 (231)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            999999999987766 78899999999999999999999999999999       8999999999999999999999999


Q ss_pred             HHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887          352 ALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE  387 (394)
Q Consensus       352 ~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~  387 (394)
                      +|+++| ++++.+|..|.||||+|+..|+.+.....
T Consensus       157 ~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  191 (231)
T 3aji_A          157 ILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFL  191 (231)
T ss_dssp             HHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            999999 99999999999999999999987765443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.3e-39  Score=261.80  Aligned_cols=158  Identities=18%  Similarity=0.194  Sum_probs=127.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887          194 EDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG  271 (394)
Q Consensus       194 ~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~  271 (394)
                      .|.||||+|+..++.+++++|++.+.  .+..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|
T Consensus        57 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  136 (223)
T 2f8y_A           57 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN  136 (223)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC
Confidence            34455555555555555555554432  2333455666667777777777777777778888889999999999999999


Q ss_pred             CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887          272 HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       272 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  351 (394)
                      +.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++       ++.+|..|.||||+|+..++.++++
T Consensus       137 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~i~~  208 (223)
T 2f8y_A          137 NVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-------RDITDHMDRLPRDIAQERMHHDIVR  208 (223)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-------CccccccCCCHHHHHHHhcchHHHH
Confidence            999999999986665 88899999999999999999999999999998       8999999999999999999999999


Q ss_pred             HHHhcCCCC
Q 040887          352 ALLRYGRSN  360 (394)
Q Consensus       352 ~Ll~~g~ad  360 (394)
                      +|+++| +.
T Consensus       209 ~L~~~g-~~  216 (223)
T 2f8y_A          209 LLDEYN-LV  216 (223)
T ss_dssp             HHHHTT-CS
T ss_pred             HHHHcC-CC
Confidence            999999 54

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.2e-39  Score=275.49  Aligned_cols=225  Identities=16%  Similarity=0.114  Sum_probs=171.1

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM  115 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  115 (394)
                      +.+|.+|.||||+||..|+.+++++|++.+. +++..  +|+||||+|+..|+.+++++|+++|++++            
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------   89 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGA-LKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDS------------   89 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTG-GGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTT------------
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------
Confidence            4466666666666666666666666666643 44544  36666666666666666666666666543            


Q ss_pred             hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887          116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED  195 (394)
Q Consensus       116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  195 (394)
                                                                                                .++..|
T Consensus        90 --------------------------------------------------------------------------~~d~~g   95 (285)
T 3kea_A           90 --------------------------------------------------------------------------QFDDKG   95 (285)
T ss_dssp             --------------------------------------------------------------------------CCCTTS
T ss_pred             --------------------------------------------------------------------------CcCCCC
Confidence                                                                                      345567


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCC-CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCH
Q 040887          196 KSPLSLAIEMGNTDVLEYILRSLPS-GISWSSG-KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA  273 (394)
Q Consensus       196 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~-~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~  273 (394)
                      .||||+|+..|+.+++++|++.+.. +..+..| .||||+|+..++.+++++|++.|.+.... ..|.||||+|+..|+.
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~  174 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHV  174 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChH
Confidence            7888888888888888888877543 4455666 68888888888888888888888766322 2789999999999999


Q ss_pred             HHHHHHHHhcCCCCccccCCCchH-HHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887          274 NVMVELLKEWRCPSLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA  352 (394)
Q Consensus       274 ~~v~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  352 (394)
                      +++++|++.+.+. +.++..|.|| ||+|+..++.+++++|+++|++       ++.+|       +.|+..|+.+++++
T Consensus       175 ~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-------~~~~~-------~~a~~~~~~~iv~~  239 (285)
T 3kea_A          175 DMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-------IYSAN-------LENVLLDDAEIAKM  239 (285)
T ss_dssp             HHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-------STTTT-------GGGGTTTCHHHHHH
T ss_pred             HHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-------CCCCC-------hhhhhcCCHHHHHH
Confidence            9999999987765 8889999997 9999999999999999999998       77776       36677899999999


Q ss_pred             HHhcCCCCCCCccc
Q 040887          353 LLRYGRSNPDLKNK  366 (394)
Q Consensus       353 Ll~~g~ad~~~~~~  366 (394)
                      |+++| +++...+.
T Consensus       240 Ll~~g-~~~~~~~~  252 (285)
T 3kea_A          240 IIEKH-VEYKSDSY  252 (285)
T ss_dssp             HHHHH-HHHTTCTT
T ss_pred             HHHcC-CCCCCccc
Confidence            99999 77655443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-40  Score=286.65  Aligned_cols=271  Identities=16%  Similarity=0.072  Sum_probs=203.6

Q ss_pred             cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHh
Q 040887           52 SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFML  131 (394)
Q Consensus        52 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  131 (394)
                      ....++|++|++.|. +++..+..|.|+++     |+.+++++|+++|++++.                 ++++.++...
T Consensus        29 ~~~~dlv~~ll~~ga-~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~-----------------~~~~~a~~~~   85 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPL-KIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI-----------------QEMPTSLNND   85 (327)
T ss_dssp             ECCTTCCCSTTTSSC-CCEECBCCCCCCCH-----HHHHHHHHHHHHHHC------------------------------
T ss_pred             hhcCchHHHHhhCCc-ccccCCCCCCcccC-----chhHHHHHHHHhccCCcc-----------------ccchHhhhcc
Confidence            566788999999965 79999999999988     999999999999998632                 2333332210


Q ss_pred             CccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHH
Q 040887          132 GRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVL  211 (394)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  211 (394)
                      ...               .   ..............+......+++++|++.|.+++..++..|.||||+|+..|+.+++
T Consensus        86 ~~~---------------~---~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v  147 (327)
T 1sw6_A           86 SSN---------------R---NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELV  147 (327)
T ss_dssp             ------------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHH
T ss_pred             ccc---------------c---cccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHH
Confidence            000               0   0000000011122344555668999999999999965899999999999999999999


Q ss_pred             HHHHHhCCC-CCCCCCCCChHHHHHhcCC---HHHHHHHHhcC-ccccccCCCCCcHHHHHHH----cCCHHHHHHHHHh
Q 040887          212 EYILRSLPS-GISWSSGKSPLQVATKKRN---LGVCYLLEVNG-YSALKKNKETLYPIHLACK----NGHANVMVELLKE  282 (394)
Q Consensus       212 ~~ll~~~~~-~~~~~~~~~~l~~a~~~~~---~~~~~~L~~~g-~~~~~~~~~g~~~l~~a~~----~~~~~~v~~Ll~~  282 (394)
                      ++|++.+.. +..+..|.||||+|+..|+   .++++.|++.+ .+++.++..|.||||+|+.    .|+.+++++|++.
T Consensus       148 ~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          148 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             HHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            999998654 6677899999999999988   56666666665 7799999999999999999    8999999999987


Q ss_pred             c-------------------CCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887          283 W-------------------RCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL  343 (394)
Q Consensus       283 ~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  343 (394)
                      .                   ...++.++..|.||||+|+.      +++|++.+         ++.+|..|+||||+|+.
T Consensus       228 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~---------~n~~d~~G~TpLh~A~~  292 (327)
T 1sw6_A          228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM---------LNAQDSNGDTCLNIAAR  292 (327)
T ss_dssp             HHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHT---------TTCCCTTSCCHHHHHHH
T ss_pred             HHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC---------CCCCCCCCCCHHHHHHH
Confidence            3                   45558889999999999985      99999983         88999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887          344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       344 ~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~  379 (394)
                      .|+.+++++|+++| +|++.+|..|+||||+|++.|
T Consensus       293 ~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          293 LGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred             cCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence            99999999999999 999999999999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.9e-39  Score=272.66  Aligned_cols=260  Identities=19%  Similarity=0.124  Sum_probs=180.8

Q ss_pred             cCCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHH
Q 040887            4 VLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCA   83 (394)
Q Consensus         4 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   83 (394)
                      ...|+||.||..|+.+.++++...+.+ ...++.++..|.||||+||..|+.+++++|+++|+ +++.++..|+||||+|
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A   85 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAG-HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA-GVLVAERGGHTALHLA   85 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTT-SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSSCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCC-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHH
Confidence            458999999999999999995433332 12257789999999999999999999999999976 7999999999999999


Q ss_pred             HHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhh
Q 040887           84 ARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDD  163 (394)
Q Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (394)
                      +..|+.+++++|++.|++..........    ..             .                                
T Consensus        86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~----~~-------------~--------------------------------  116 (282)
T 1oy3_D           86 CRVRAHTCACVLLQPRPSHPRDASDTYL----TQ-------------S--------------------------------  116 (282)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC---------------------------------------------------------
T ss_pred             HHcCCcchhHhhhccCCCCchhhHHHHh----hc-------------c--------------------------------
Confidence            9999999999999999875422111000    00             0                                


Q ss_pred             hhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH-H-hCCCCCCCCCCCChHHHHHhcCCHH
Q 040887          164 TIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL-R-SLPSGISWSSGKSPLQVATKKRNLG  241 (394)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll-~-~~~~~~~~~~~~~~l~~a~~~~~~~  241 (394)
                                           ..   .....+.++++.++..+....+..++ . ....+..+..|.||||+|+..|+.+
T Consensus       117 ---------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  172 (282)
T 1oy3_D          117 ---------------------QD---CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE  172 (282)
T ss_dssp             ---------------------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ---------------------cc---cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHH
Confidence                                 00   01112334444444333322222111 1 1223455677888888888888888


Q ss_pred             HHHHHHhcCccccccCCC-CCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q 040887          242 VCYLLEVNGYSALKKNKE-TLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN  320 (394)
Q Consensus       242 ~~~~L~~~g~~~~~~~~~-g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  320 (394)
                      ++++|++.|++++..+.. |.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++ 
T Consensus       173 ~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-  250 (282)
T 1oy3_D          173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAP-  250 (282)
T ss_dssp             HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC-
T ss_pred             HHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcHHHHHHHHcCCC-
Confidence            999999999999988854 999999999999999999999997665 88999999999999999999999999999999 


Q ss_pred             CcchhhccccCCCCCcHHHHHHHcCC
Q 040887          321 MTMDEVVNKMDEDGNTPLHLAALHGH  346 (394)
Q Consensus       321 ~~~~~~~~~~~~~g~t~L~~A~~~~~  346 (394)
                            ++.+|..|.|||++|.....
T Consensus       251 ------~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          251 ------EPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             ------CCCCC---------------
T ss_pred             ------cCcCCCcccccccccCCccc
Confidence                  99999999999999987653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=257.18  Aligned_cols=227  Identities=22%  Similarity=0.257  Sum_probs=203.6

Q ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhh
Q 040887           69 INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTM  148 (394)
Q Consensus        69 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~  148 (394)
                      ++..|..|.|||+.|+..|+.+++++|++.|++++                                             
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~---------------------------------------------   36 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVR---------------------------------------------   36 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT---------------------------------------------
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcC---------------------------------------------
Confidence            34567889999999999999999999999988763                                             


Q ss_pred             hhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC--CCCCC
Q 040887          149 AHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSG--ISWSS  226 (394)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~  226 (394)
                                                               ..+..|.||||+|+..|+.+++++|++.+...  .....
T Consensus        37 -----------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   75 (240)
T 3eu9_A           37 -----------------------------------------QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL   75 (240)
T ss_dssp             -----------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred             -----------------------------------------CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence                                                     24456889999999999999999999987653  33345


Q ss_pred             CCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCC
Q 040887          227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGH  306 (394)
Q Consensus       227 ~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  306 (394)
                      +.||||.|+..++.+++++|++.|++++.++..|.||||.|+..|+.+++++|++.+... +..+..|.||||+|+..++
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCC
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCC
Confidence            899999999999999999999999999999999999999999999999999999987765 8889999999999997766


Q ss_pred             -HHHHHHHHhCCCCCCcchhhccccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          307 -ADMVKAIIEIPGTNMTMDEVVNKMDE-DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       307 -~~~~~~Ll~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                       .+++++|++.|++       ++..+. .|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|++.|+.+..
T Consensus       155 ~~~~~~~L~~~~~~-------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v  226 (240)
T 3eu9_A          155 SVDPTRLLLTFNVS-------VNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMI  226 (240)
T ss_dssp             SSTTHHHHHHTTCC-------TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHhcCCC-------cchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence             8999999999999       888887 9999999999999999999999999 99999999999999999999998876


Q ss_pred             hhHHHh
Q 040887          385 IAEKQE  390 (394)
Q Consensus       385 ~~~~~~  390 (394)
                      ....+.
T Consensus       227 ~~L~~~  232 (240)
T 3eu9_A          227 NHLQEA  232 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.7e-38  Score=258.58  Aligned_cols=220  Identities=21%  Similarity=0.202  Sum_probs=180.9

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCC-CCccc-ccCCCCCHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP-FLINK-TNNQGDTPLHCA   83 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~-~~~~g~t~L~~A   83 (394)
                      +|+||.|+..|+.+.++++...+.+.   ....|.+|.||||+|+..|+.+++++|++.++ .+++. .+..|.||||+|
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSL---LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGG---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccc---cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            78999999999999999954444333   45689999999999999999999999999973 24555 889999999999


Q ss_pred             HHcCcHHHHHHHHhhc--cCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccch
Q 040887           84 ARAGKLNTATALVDFA--KHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAI  161 (394)
Q Consensus        84 ~~~~~~~~v~~Ll~~g--a~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (394)
                      +..|+.+++++|++.|  ++++                                                          
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~~----------------------------------------------------------  101 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDLN----------------------------------------------------------  101 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCTT----------------------------------------------------------
T ss_pred             HHcCCHHHHHHHHhCCCCcccc----------------------------------------------------------
Confidence            9999999999999987  3321                                                          


Q ss_pred             hhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHH
Q 040887          162 DDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLG  241 (394)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~  241 (394)
                                                  ..+..|.||||+|+..++.++                               
T Consensus       102 ----------------------------~~~~~g~t~L~~A~~~~~~~~-------------------------------  122 (228)
T 2dzn_A          102 ----------------------------KITNQGVTCLHLAVGKKWFEV-------------------------------  122 (228)
T ss_dssp             ----------------------------CCCTTCCCHHHHHHHTTCHHH-------------------------------
T ss_pred             ----------------------------cCCcCCCCHHHHHHHcCCHhH-------------------------------
Confidence                                        233345555555555555554                               


Q ss_pred             HHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHH-hCCCCC
Q 040887          242 VCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAII-EIPGTN  320 (394)
Q Consensus       242 ~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~~~~~  320 (394)
                       +++|++.|++++.++..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|+ +.|++ 
T Consensus       123 -~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-  200 (228)
T 2dzn_A          123 -SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-  200 (228)
T ss_dssp             -HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-
T ss_pred             -HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-
Confidence             455555677788888999999999999999999999999986666889999999999999999999999999 88998 


Q ss_pred             CcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040887          321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY  356 (394)
Q Consensus       321 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  356 (394)
                            ++.+|..|+|||++|+..   +++++|+++
T Consensus       201 ------~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          201 ------YDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             ------SCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             ------CCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence                  899999999999999754   566777653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.7e-38  Score=266.51  Aligned_cols=216  Identities=17%  Similarity=0.129  Sum_probs=191.6

Q ss_pred             hcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHH
Q 040887           51 KSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFM  130 (394)
Q Consensus        51 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~  130 (394)
                      +..+.+.+..|+..+  +++.+|..|.||||+|+..|+.+++++|++.|++++.                          
T Consensus         8 ~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--------------------------   59 (285)
T 3kea_A            8 NTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--------------------------   59 (285)
T ss_dssp             GGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC--------------------------
T ss_pred             HhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--------------------------
Confidence            344555555555543  4799999999999999999999999999999887631                          


Q ss_pred             hCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHH
Q 040887          131 LGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDV  210 (394)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  210 (394)
                                                                                  .  +|.||||+|+..|+.++
T Consensus        60 ------------------------------------------------------------~--~g~t~L~~A~~~g~~~~   77 (285)
T 3kea_A           60 ------------------------------------------------------------L--ENEFPLHQAATLEDTKI   77 (285)
T ss_dssp             ------------------------------------------------------------C--TTCCHHHHHTTSSSCHH
T ss_pred             ------------------------------------------------------------C--CCCCHHHHHHHcCCHHH
Confidence                                                                        1  37899999999999999


Q ss_pred             HHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCC-CcHHHHHHHcCCHHHHHHHHHhcCCCCc
Q 040887          211 LEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET-LYPIHLACKNGHANVMVELLKEWRCPSL  288 (394)
Q Consensus       211 ~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g-~~~l~~a~~~~~~~~v~~Ll~~~~~~~~  288 (394)
                      +++|++.+.. +..+..|.||||+|+..|+.+++++|++.|++++.++..| .||||+|+..|+.+++++|++.++....
T Consensus        78 v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  157 (285)
T 3kea_A           78 VKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD  157 (285)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC
T ss_pred             HHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc
Confidence            9999997654 5677889999999999999999999999999999999999 8999999999999999999999876522


Q ss_pred             cccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCCCccc
Q 040887          289 FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTP-LHLAALHGHSQVVYALLRYGRSNPDLKNK  366 (394)
Q Consensus       289 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~  366 (394)
                        ...|.||||+|+..|+.+++++|+++|++       ++.+|..|+|| ||+|+..|+.+++++|+++| ++++.+|.
T Consensus       158 --~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-------~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~  226 (285)
T 3kea_A          158 --LAILLSCIHITIKNGHVDMMILLLDYMTS-------TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANL  226 (285)
T ss_dssp             --CSTHHHHHHHHHHTTCHHHHHHHHHHHHH-------TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTG
T ss_pred             --ccCCccHHHHHHHcChHHHHHHHHHcCCC-------CCcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCh
Confidence              12899999999999999999999999998       99999999998 99999999999999999999 99999885

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2e-39  Score=267.29  Aligned_cols=222  Identities=21%  Similarity=0.212  Sum_probs=185.1

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCC---CcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchh
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF---LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDL  112 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  112 (394)
                      +.+|.+|.||||+||..|+.+++++|++.+..   +++.++..|.||||+|+..|+.+++++|+++|++++         
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------   72 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE---------   72 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC---------
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence            34789999999999999999999999998653   689999999999999999999999999999988864         


Q ss_pred             hhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccC
Q 040887          113 LRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKN  192 (394)
Q Consensus       113 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (394)
                                                                                                   .++
T Consensus        73 -----------------------------------------------------------------------------~~~   75 (236)
T 1ikn_D           73 -----------------------------------------------------------------------------LRD   75 (236)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             -----------------------------------------------------------------------------CcC
Confidence                                                                                         234


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC
Q 040887          193 IEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH  272 (394)
Q Consensus       193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~  272 (394)
                      ..|.||||+|+..++.+++++|++.+....                          ....++..+..|.||||+|+..|+
T Consensus        76 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--------------------------~~~~~~~~~~~g~t~L~~A~~~~~  129 (236)
T 1ikn_D           76 FRGNTPLHLACEQGCLASVGVLTQSCTTPH--------------------------LHSILKATNYNGHTCLHLASIHGY  129 (236)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTS--------------------------SSCGGGCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccchh--------------------------HHHHhhccCCCCCCHHHHHHHcCC
Confidence            467888888888888888888887653311                          112256677889999999999999


Q ss_pred             HHHHHHHHHhcCCCCccccC-CCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887          273 ANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       273 ~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  351 (394)
                      .+++++|++.+.+. +..+. .|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+..|+.++++
T Consensus       130 ~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~tpl~~A~~~~~~~~~~  201 (236)
T 1ikn_D          130 LGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-------VNRVTYQGYSPYQLTWGRPSTRIQQ  201 (236)
T ss_dssp             HHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------SCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCcccCCCCCHHHHHHccCchHHHH
Confidence            99999999988776 66776 899999999999999999999999999       9999999999999999999999999


Q ss_pred             HHHhcCCCCCC--CcccCCCcHHHHHHhh
Q 040887          352 ALLRYGRSNPD--LKNKQGMTAYKMALRE  378 (394)
Q Consensus       352 ~Ll~~g~ad~~--~~~~~g~t~l~~a~~~  378 (394)
                      +|+++| +++.  .++..|.||.+.+...
T Consensus       202 ~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          202 QLGQLT-LENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHTTS-CGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHcc-hhhhhcCCccchHHHHhhhccc
Confidence            999999 8776  8899999998876544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.2e-36  Score=244.55  Aligned_cols=195  Identities=25%  Similarity=0.296  Sum_probs=172.6

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhh
Q 040887           39 LTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENA  118 (394)
Q Consensus        39 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  118 (394)
                      +..+.||||.||..|+.+.+++|+..++.+++..+..|.||||+|+..|+.+++++|+++|++++               
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------   66 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN---------------   66 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------
Confidence            35688999999999999999999999888899999999999999999999999999999988864               


Q ss_pred             cCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcH
Q 040887          119 MGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSP  198 (394)
Q Consensus       119 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  198 (394)
                                                                                             ..+..|.||
T Consensus        67 -----------------------------------------------------------------------~~~~~g~t~   75 (201)
T 3hra_A           67 -----------------------------------------------------------------------LQNSISDSP   75 (201)
T ss_dssp             -----------------------------------------------------------------------CCCTTSCCH
T ss_pred             -----------------------------------------------------------------------CCCCCCCCH
Confidence                                                                                   234457788


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887          199 LSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVE  278 (394)
Q Consensus       199 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~  278 (394)
                      ||+|+..++.+++++|++.                               .+.+++..+..|.||||+|+..|+.+++++
T Consensus        76 l~~A~~~~~~~~~~~Ll~~-------------------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  124 (201)
T 3hra_A           76 YLYAGAQGRTEILAYMLKH-------------------------------ATPDLNKHNRYGGNALIPAAEKGHIDNVKL  124 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-------------------------------SCCCTTCCCTTSCCSHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhc-------------------------------cCcccccccCCCCcHHHHHHHcCCHHHHHH
Confidence            8888888888888877754                               345677788889999999999999999999


Q ss_pred             HHHhcCCCCccccCCCchHHHHHHHcCC-----HHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          279 LLKEWRCPSLFVTDNGCNILHFAAKNGH-----ADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL  353 (394)
Q Consensus       279 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  353 (394)
                      |++.++..++..+..|.||||+|+..++     .+++++|++.|++       ++.+|..|+||||+|+..|+.+++++|
T Consensus       125 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~~~~~L  197 (201)
T 3hra_A          125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-------QSIKDNSGRTAMDYANQKGYTEISKIL  197 (201)
T ss_dssp             HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-------CCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence            9999866678899999999999999988     9999999999999       899999999999999999999999999


Q ss_pred             HhcC
Q 040887          354 LRYG  357 (394)
Q Consensus       354 l~~g  357 (394)
                      +++|
T Consensus       198 l~~G  201 (201)
T 3hra_A          198 AQYN  201 (201)
T ss_dssp             HTCC
T ss_pred             HhcC
Confidence            9986

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.9e-37  Score=250.90  Aligned_cols=208  Identities=19%  Similarity=0.207  Sum_probs=191.1

Q ss_pred             HHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCc
Q 040887          173 LVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGY  251 (394)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~  251 (394)
                      ..+++++|++.|.++....+..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.+.
T Consensus         3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   82 (223)
T 2f8y_A            3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA   82 (223)
T ss_dssp             --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred             cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            346778889999999877789999999999999999999999997644 6677889999999999999999999999987


Q ss_pred             -cccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhcccc
Q 040887          252 -SALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM  330 (394)
Q Consensus       252 -~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  330 (394)
                       +++..+..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..|+.+++++|++.|++       ++.+
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~  154 (223)
T 2f8y_A           83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-------KDMQ  154 (223)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-------TTCC
T ss_pred             CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------CCCc
Confidence             88999999999999999999999999999987665 88899999999999999999999999999999       9999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHHH
Q 040887          331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQ  389 (394)
Q Consensus       331 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~~  389 (394)
                      |..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|++.++.+......+
T Consensus       155 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~  212 (223)
T 2f8y_A          155 NNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDE  212 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence            999999999999999999999999999 9999999999999999999998877655444

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3e-37  Score=263.86  Aligned_cols=246  Identities=20%  Similarity=0.248  Sum_probs=188.6

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      .++|+.||..|+++.++++...+.++    +..|.+|.||||+||..|+.+++++|++.|+ +++.+|..|.||||+|+.
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLERGADI----NYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCT----TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCC----cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHH
Confidence            58999999999999999955555554    6689999999999999999999999999965 799999999999999999


Q ss_pred             cCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887           86 AGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI  165 (394)
Q Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (394)
                      .|+.+++++|+++|++++.           .+..|.                                            
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~-----------~~~~g~--------------------------------------------  140 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGA-----------VNSEGD--------------------------------------------  140 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTC-----------CCTTSC--------------------------------------------
T ss_pred             cCCHHHHHHHHhCCCCCCC-----------cCCCCC--------------------------------------------
Confidence            9999999999999988642           233344                                            


Q ss_pred             hhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCC-HHHHH
Q 040887          166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRN-LGVCY  244 (394)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~  244 (394)
                                                     |||++|+..++.++++.++........      .......... ..+..
T Consensus       141 -------------------------------t~l~~A~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~~~~~~~~~  183 (299)
T 1s70_B          141 -------------------------------TPLDIAEEEAMEELLQNEVNRQGVDIE------AARKEEERIMLRDARQ  183 (299)
T ss_dssp             -------------------------------CHHHHCCSHHHHHHHHHHHHHHTCCHH------HHHHHHHHHHHHHHHH
T ss_pred             -------------------------------CHHHHHHhcchHHHHHHHHhhcCCCch------hhhhhhhhHHHHHHHH
Confidence                                           455555444455555554443211100      0000000000 12334


Q ss_pred             HHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcch
Q 040887          245 LLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMD  324 (394)
Q Consensus       245 ~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  324 (394)
                      ++..........+..|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|+++|++     
T Consensus       184 ~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad-----  257 (299)
T 1s70_B          184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD-----  257 (299)
T ss_dssp             HHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred             HHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-----
Confidence            455555555567788999999999999999999999987665 88999999999999999999999999999999     


Q ss_pred             hhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       325 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                        ++.+|..|+||||+|+.. ..+.++.|++..
T Consensus       258 --~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~~  287 (299)
T 1s70_B          258 --MEAVNKVGQTAFDVADED-ILGYLEELQKKQ  287 (299)
T ss_dssp             --TTCCCTTSCCTTTSCCSG-GGHHHHHHHHHT
T ss_pred             --CCCcCCCCCCHHHHHHHH-HHHHHHHHHHHH
Confidence              999999999999999764 456666666654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=9.3e-37  Score=257.01  Aligned_cols=237  Identities=17%  Similarity=0.145  Sum_probs=163.7

Q ss_pred             hhcCCCCchHHHHHHhcCCHHHHHHHHHhC---CCCcc----cccCCCCCHHHHHHHc---CcHHHHHHHHhhccCCCCC
Q 040887           36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYY---PFLIN----KTNNQGDTPLHCAARA---GKLNTATALVDFAKHIPST  105 (394)
Q Consensus        36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~---~~~~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~  105 (394)
                      +..|.+|.||||+||+.|+.++|+.|++.+   +.+++    ..+..|+||||+|+..   |+.+++++|++.|++++. 
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~-   85 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS-   85 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC-
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc-
Confidence            458899999999999999999999999842   33343    4578999999999987   999999999999876421 


Q ss_pred             CCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCC
Q 040887          106 SQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDP  185 (394)
Q Consensus       106 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  185 (394)
                                                                                             ++.++....
T Consensus        86 -----------------------------------------------------------------------~~~~i~~~~   94 (273)
T 2pnn_A           86 -----------------------------------------------------------------------LKQFVNASY   94 (273)
T ss_dssp             -----------------------------------------------------------------------HHHHHTCCC
T ss_pred             -----------------------------------------------------------------------hhHHhhccc
Confidence                                                                                   001111100


Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHH
Q 040887          186 KLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIH  265 (394)
Q Consensus       186 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~  265 (394)
                         ...+..|.||||+|+..|+.+++++|++.+........+. .                 ....+....+..|.||||
T Consensus        95 ---~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-~-----------------~~~~~~~~~~~~g~tpL~  153 (273)
T 2pnn_A           95 ---TDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD-F-----------------FKKTKGRPGFYFGELPLS  153 (273)
T ss_dssp             ---CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSG-G-----------------GSSCSSSCCCCSCBSHHH
T ss_pred             ---ccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccc-c-----------------cccccccccccCCCCHHH
Confidence               0234457777777777777777777776543311111100 0                 000122233447999999


Q ss_pred             HHHHcCCHHHHHHHHH---hcCCCCccccCCCchHHHHHHHcCC---------HHHHHHHHhCCCCCCcchhhcc-----
Q 040887          266 LACKNGHANVMVELLK---EWRCPSLFVTDNGCNILHFAAKNGH---------ADMVKAIIEIPGTNMTMDEVVN-----  328 (394)
Q Consensus       266 ~a~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~-----  328 (394)
                      +|+..|+.+++++|++   .+.+ ++.+|..|+||||+|+..++         .+++++|++.|++       ++     
T Consensus       154 ~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-------~n~~~~~  225 (273)
T 2pnn_A          154 LAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK-------LHPTLKL  225 (273)
T ss_dssp             HHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-------HCTTCCG
T ss_pred             HHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh-------ccccccc
Confidence            9999999999999999   5544 48899999999999999888         8999999999988       65     


Q ss_pred             --ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHH
Q 040887          329 --KMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYK  373 (394)
Q Consensus       329 --~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~  373 (394)
                        .+|..|+||||+|+..|+.+++++|+++|..||......+.+|-+
T Consensus       226 ~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          226 EEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             ccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence              589999999999999999999999999994499998888887754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.4e-35  Score=245.11  Aligned_cols=216  Identities=16%  Similarity=0.137  Sum_probs=163.3

Q ss_pred             CCchHHHHHHhcCCHH----HHHHHHHhCCCCccc----ccCCCCCHHHHHHHc---CcHHHHHHHHhhccCCCCCCCCc
Q 040887           41 DGSSLLHVAAKSGHGE----ITAKIAQYYPFLINK----TNNQGDTPLHCAARA---GKLNTATALVDFAKHIPSTSQAP  109 (394)
Q Consensus        41 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~~  109 (394)
                      .|+||||+||..|+.+    ++++|++.+. +++.    .|..|+||||+|+..   |+.+++++|++.|++++..... 
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~-~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~-   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK-YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL-   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG-
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCC-CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh-
Confidence            4899999999999997    6677777865 7887    899999999999999   9999999999998876422100 


Q ss_pred             chhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCcc
Q 040887          110 VDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSC  189 (394)
Q Consensus       110 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  189 (394)
                         +                                                                    ..  . ..
T Consensus        79 ---~--------------------------------------------------------------------~~--~-~~   84 (256)
T 2etb_A           79 ---V--------------------------------------------------------------------NA--Q-CT   84 (256)
T ss_dssp             ---G--------------------------------------------------------------------GC--C-CC
T ss_pred             ---c--------------------------------------------------------------------cc--c-cc
Confidence               0                                                                    00  0 00


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHH
Q 040887          190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC  268 (394)
Q Consensus       190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~  268 (394)
                      .++..|.||||+|+..|+.+++++|++.+.. +..+..+..                    ..+.+..+..|.||||+|+
T Consensus        85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~--------------------~~~~~~~~~~g~tpL~~A~  144 (256)
T 2etb_A           85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF--------------------QKHQGTCFYFGELPLSLAA  144 (256)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG--------------------SCCSSSCCCSCSSHHHHHH
T ss_pred             cccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccc--------------------cccccccccCCCCHHHHHH
Confidence            2334567777777777777777776665432 111111100                    0112222334999999999


Q ss_pred             HcCCHHHHHHHHH---hcCCCCccccCCCchHHHHHHH--cCCHH-------HHHHHHhCCCCCCcchhhc-------cc
Q 040887          269 KNGHANVMVELLK---EWRCPSLFVTDNGCNILHFAAK--NGHAD-------MVKAIIEIPGTNMTMDEVV-------NK  329 (394)
Q Consensus       269 ~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~--~~~~~-------~~~~Ll~~~~~~~~~~~~~-------~~  329 (394)
                      ..|+.+++++|++   .+.+ ++.+|..|+||||+|+.  .++.+       ++++|+++|++       +       +.
T Consensus       145 ~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~-------~~~~~~~~~~  216 (256)
T 2etb_A          145 CTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR-------LCPTVQLEEI  216 (256)
T ss_dssp             HTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-------HSTTCCGGGC
T ss_pred             HcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC-------cccccccccc
Confidence            9999999999999   5544 48889999999999998  78888       99999999988       7       89


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 040887          330 MDEDGNTPLHLAALHGHSQVVYALLRYGRSNP  361 (394)
Q Consensus       330 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~  361 (394)
                      +|..|+||||+|+..|+.+++++|+++| +++
T Consensus       217 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~  247 (256)
T 2etb_A          217 SNHQGLTPLKLAAKEGKIEIFRHILQRE-FSG  247 (256)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHH-HHH
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHhCC-CCC
Confidence            9999999999999999999999999998 543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-36  Score=261.12  Aligned_cols=252  Identities=15%  Similarity=0.017  Sum_probs=192.9

Q ss_pred             ccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCccc-----------------ccCCCCC
Q 040887           16 GNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINK-----------------TNNQGDT   78 (394)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----------------~~~~g~t   78 (394)
                      ...+.++++...+.++    +..+..|.|+++     |+.++|++|+++|. +++.                 ......+
T Consensus        30 ~~~dlv~~ll~~ga~i----~~~~~~g~~~~~-----g~~~~v~~Ll~~g~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~   99 (327)
T 1sw6_A           30 FTHDLTSDFLSSPLKI----MKALPSPVVNDN-----EQKMKLEAFLQRLL-FPEIQEMPTSLNNDSSNRNSEGGSSNQQ   99 (327)
T ss_dssp             CCTTCCCSTTTSSCCC----EECBCCCCCCCH-----HHHHHHHHHHHHHH-C---------------------------
T ss_pred             hcCchHHHHhhCCccc----ccCCCCCCcccC-----chhHHHHHHHHhcc-CCccccchHhhhcccccccccccCCccc
Confidence            3445566666666665    668899999987     99999999999974 2222                 1111223


Q ss_pred             HHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcc
Q 040887           79 PLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPT  158 (394)
Q Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (394)
                      .+|.|+..+..+++++|++.|++++..          .+..|.||||+|+..+                  +.       
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~----------~d~~g~TpLh~Aa~~g------------------~~-------  144 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIP----------VDEHGNTPLHWLTSIA------------------NL-------  144 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSC----------CSTTCCCHHHHHHHTT------------------CH-------
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccc----------cCCCCCcHHHHHHHcC------------------CH-------
Confidence            458888888999999999999998531          5778999999999877                  33       


Q ss_pred             cchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHHhC--CCCCCCCCCCChHHH
Q 040887          159 LAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGN---TDVLEYILRSL--PSGISWSSGKSPLQV  233 (394)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~--~~~~~~~~~~~~l~~  233 (394)
                                      +++++|++.|.+++ .++..|.||||+|+..|+   .++++.|++.+  ..+..+..|.||||+
T Consensus       145 ----------------~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  207 (327)
T 1sw6_A          145 ----------------ELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  207 (327)
T ss_dssp             ----------------HHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             ----------------HHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHH
Confidence                            99999999999998 788899999999999988   56666666653  346677899999999


Q ss_pred             HHh----cCCHHHHHHHHhc--------------------CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcc
Q 040887          234 ATK----KRNLGVCYLLEVN--------------------GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLF  289 (394)
Q Consensus       234 a~~----~~~~~~~~~L~~~--------------------g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~  289 (394)
                      |+.    .++.+++++|++.                    |++++.++..|.||||.|+.      +++|++.   .++.
T Consensus       208 A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~  278 (327)
T 1sw6_A          208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNA  278 (327)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH---TTTC
T ss_pred             HHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCC
Confidence            999    8999999999877                    88999999999999999985      7889887   3578


Q ss_pred             ccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcC
Q 040887          290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG  345 (394)
Q Consensus       290 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  345 (394)
                      +|..|+||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+..|
T Consensus       279 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad-------~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          279 QDSNGDTCLNIAARLGNISIVDALLDYGAD-------PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-------TTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CcccCCCCCCHHHHHHhcC
Confidence            899999999999999999999999999999       9999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.2e-34  Score=229.56  Aligned_cols=188  Identities=22%  Similarity=0.217  Sum_probs=174.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHc
Q 040887          193 IEDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN  270 (394)
Q Consensus       193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~  270 (394)
                      ..+.|||+.|+..|+.+.++.|+....  .+..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            357899999999999999999998654  466678899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCcchhhccccCCCCCcHHHHHHHcCC---
Q 040887          271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP-GTNMTMDEVVNKMDEDGNTPLHLAALHGH---  346 (394)
Q Consensus       271 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---  346 (394)
                      |+.+++++|++..+..++..+..|.||||+|+..|+.+++++|++.| ++       ++.+|..|+||||+|+..++   
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~~g~t~L~~A~~~~~~~~  155 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-------IDFQNDFGYTALIEAVGLREGNQ  155 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC-------TTCCCTTSCCHHHHHHHSSCCSH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------cCCCCCCCCCHHHHHHHhccchh
Confidence            99999999998888777999999999999999999999999999999 66       89999999999999999998   


Q ss_pred             --HHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          347 --SQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       347 --~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                        .+++++|+++| ++++.+|..|.|||++|++.|+.+......
T Consensus       156 ~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  198 (201)
T 3hra_A          156 LYQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILA  198 (201)
T ss_dssp             HHHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence              99999999999 999999999999999999999887764443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=9.7e-34  Score=232.76  Aligned_cols=187  Identities=25%  Similarity=0.243  Sum_probs=169.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh-C-CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccc-----cccCCCCCcHHHH
Q 040887          194 EDKSPLSLAIEMGNTDVLEYILRS-L-PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSA-----LKKNKETLYPIHL  266 (394)
Q Consensus       194 ~~~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~-----~~~~~~g~~~l~~  266 (394)
                      .|.||||+|+..|+.+++++|++. + ..+..+..|.||||+|+..|+.+++++|++.|.++     +.++..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            478999999999999999999986 3 44667789999999999999999999999999987     5677899999999


Q ss_pred             HHHcCCHHHHHHHHHhcCCCCccccC-------------CCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCC
Q 040887          267 ACKNGHANVMVELLKEWRCPSLFVTD-------------NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDED  333 (394)
Q Consensus       267 a~~~~~~~~v~~Ll~~~~~~~~~~~~-------------~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  333 (394)
                      |+..|+.+++++|++.+.+. +..+.             .|.||||+|+..|+.+++++|+++|++       ++.+|..
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~  153 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-------IRAQDSL  153 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTT
T ss_pred             HHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-------CCCCCCC
Confidence            99999999999999987665 54443             799999999999999999999999999       9999999


Q ss_pred             CCcHHHHHHHcCCHHHH----HHHHhcCCCCC------CCcccCCCcHHHHHHhhhhcchhhhHHH
Q 040887          334 GNTPLHLAALHGHSQVV----YALLRYGRSNP------DLKNKQGMTAYKMALREYYMQTSIAEKQ  389 (394)
Q Consensus       334 g~t~L~~A~~~~~~~~~----~~Ll~~g~ad~------~~~~~~g~t~l~~a~~~~~~~~~~~~~~  389 (394)
                      |+||||+|+..++.+++    ++|+++| +++      +.+|..|+|||++|++.|+.+......+
T Consensus       154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          154 GNTVLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             SCCHHHHHHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCHHHHHHHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999988    9999999 887      5899999999999999999887644443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=8.2e-34  Score=218.99  Aligned_cols=158  Identities=33%  Similarity=0.410  Sum_probs=139.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHH
Q 040887          197 SPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANV  275 (394)
Q Consensus       197 ~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~  275 (394)
                      ++|+.|+..|+.++|++|++.+.+ +..+..|.|||++|+..+..+++++|++.|++++.++..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            468899999999999999987644 6778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040887          276 MVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR  355 (394)
Q Consensus       276 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  355 (394)
                      +++|++.+.+. +.+|..|+||||+|+..|+.+++++|++.|++       ++.+|..|+||||+|+..|+.+++++|++
T Consensus        86 v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  157 (169)
T 4gpm_A           86 VKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-------VNTSDSDGRTPLDLAREHGNEEVVKLLEK  157 (169)
T ss_dssp             HHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------ccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999987665 88899999999999999999999999999998       89999999999999999999999999999


Q ss_pred             cCCCCCCC
Q 040887          356 YGRSNPDL  363 (394)
Q Consensus       356 ~g~ad~~~  363 (394)
                      +| |+++.
T Consensus       158 ~G-A~ie~  164 (169)
T 4gpm_A          158 QG-GWLEH  164 (169)
T ss_dssp             C-------
T ss_pred             CC-CCcCC
Confidence            99 88753

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.6e-35  Score=242.72  Aligned_cols=190  Identities=22%  Similarity=0.277  Sum_probs=170.7

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCC-----CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHH
Q 040887          190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLP-----SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPI  264 (394)
Q Consensus       190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l  264 (394)
                      ..+..|.||||+|+..|+.+++++|++.+.     .+..+..|.||||+|+..++.+++++|++.|++++.++..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            467789999999999999999999988653     466778899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCC-----CccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC-CCCcHH
Q 040887          265 HLACKNGHANVMVELLKEWRCP-----SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE-DGNTPL  338 (394)
Q Consensus       265 ~~a~~~~~~~~v~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~-~g~t~L  338 (394)
                      |+|+..|+.+++++|++.+...     .+..+..|.||||+|+..|+.+++++|++.|++       ++.++. .|+|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~~g~tpL  155 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-------VNAQEPCNGRTAL  155 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-------TTCCCTTTCCCHH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCCCCCCCCCHH
Confidence            9999999999999999987542     466788899999999999999999999999999       899997 999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887          339 HLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE  387 (394)
Q Consensus       339 ~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~  387 (394)
                      |+|+..|+.+++++|+++| ++++.+|..|.|||++|+..|+.+.....
T Consensus       156 ~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L  203 (236)
T 1ikn_D          156 HLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQL  203 (236)
T ss_dssp             HHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHH
Confidence            9999999999999999999 99999999999999999999887765443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.3e-33  Score=216.43  Aligned_cols=150  Identities=30%  Similarity=0.350  Sum_probs=142.7

Q ss_pred             ChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHH
Q 040887          229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD  308 (394)
Q Consensus       229 ~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  308 (394)
                      ++|+.|++.|+.++++.|++.|++++.++..|.||||+|+..++.+++++|++.+.+. +.++..|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHH
Confidence            4789999999999999999999999999999999999999999999999999987766 889999999999999999999


Q ss_pred             HHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887          309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE  387 (394)
Q Consensus       309 ~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~  387 (394)
                      ++++|++.|++       +|.+|.+|+||||+|+..|+.+++++|+++| +|++.+|.+|+|||++|++.|+.+.....
T Consensus        85 ~v~~Ll~~gad-------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~L  155 (169)
T 4gpm_A           85 VVKLLISKGAD-------VNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLL  155 (169)
T ss_dssp             HHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHCcCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999       9999999999999999999999999999999 99999999999999999999987765443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=8.1e-34  Score=237.40  Aligned_cols=213  Identities=16%  Similarity=0.162  Sum_probs=158.1

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHH----hCCCCccccc----CCCCCHHHHHH---HcCcHHHHHHHHhhccCCCCCCC
Q 040887           39 LTDGSSLLHVAAKSGHGEITAKIAQ----YYPFLINKTN----NQGDTPLHCAA---RAGKLNTATALVDFAKHIPSTSQ  107 (394)
Q Consensus        39 ~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~~~  107 (394)
                      +..|+|+||.||+.|+.+.++.|++    .+. +++..+    ..|+||||+|+   ..|+.+++++|++.|+++...  
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~--   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM--   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH--
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch--
Confidence            4678999999999999995555554    754 566555    77999999999   679999999999998764210  


Q ss_pred             CcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCC
Q 040887          108 APVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKL  187 (394)
Q Consensus       108 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  187 (394)
                                                                                            ..++.  ...
T Consensus        79 ----------------------------------------------------------------------~~~~~--~~~   86 (260)
T 3jxi_A           79 ----------------------------------------------------------------------REFIN--SPF   86 (260)
T ss_dssp             ----------------------------------------------------------------------HHHHT--CCB
T ss_pred             ----------------------------------------------------------------------Hhhhc--ccc
Confidence                                                                                  00000  000


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccC----------
Q 040887          188 SCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN----------  257 (394)
Q Consensus       188 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~----------  257 (394)
                       ...+..|.||||+|+..|+.+++++|++                                .|++++.++          
T Consensus        87 -~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--------------------------------~ga~~~~~~~~~~~~~~~~  133 (260)
T 3jxi_A           87 -RDVYYRGQTALHIAIERRCKHYVELLVE--------------------------------KGADVHAQARGRFFQPKDE  133 (260)
T ss_dssp             -CCSSEESBCHHHHHHHTTCHHHHHHHHH--------------------------------TTCCTTCCCEECCCSSSCC
T ss_pred             -cccccCCCCHHHHHHHcCCHHHHHHHHh--------------------------------CCCCcCccccccccCcccc
Confidence             0233345666666666666666665555                                444444444          


Q ss_pred             ----CCCCcHHHHHHHcCCHHHHHHHHH---hcCCCCccccCCCchHHHHHHHcCC---------HHHHHHHHhCCCCCC
Q 040887          258 ----KETLYPIHLACKNGHANVMVELLK---EWRCPSLFVTDNGCNILHFAAKNGH---------ADMVKAIIEIPGTNM  321 (394)
Q Consensus       258 ----~~g~~~l~~a~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~~~~  321 (394)
                          ..|.||||+|+..|+.+++++|++   .+.+. +.+|..|+||||+|+..++         .+++++|++.|++..
T Consensus       134 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          134 GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             CCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence                679999999999999999999999   55444 8899999999999998887         799999999998810


Q ss_pred             cchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 040887          322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP  361 (394)
Q Consensus       322 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~  361 (394)
                      .....++.+|..|+||||+|+..|+.+++++|+++| +++
T Consensus       213 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~  251 (260)
T 3jxi_A          213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE-IAD  251 (260)
T ss_dssp             TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-HHH
T ss_pred             cccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC-CCc
Confidence            000011779999999999999999999999999998 543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.2e-33  Score=233.16  Aligned_cols=186  Identities=22%  Similarity=0.195  Sum_probs=165.1

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHHhCCC-CC----CCCCCCChHHHHHhc---CCHHHHHHHHhcCcccccc------
Q 040887          195 DKSPLSLAIEMGNTD----VLEYILRSLPS-GI----SWSSGKSPLQVATKK---RNLGVCYLLEVNGYSALKK------  256 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~----~~~~ll~~~~~-~~----~~~~~~~~l~~a~~~---~~~~~~~~L~~~g~~~~~~------  256 (394)
                      |.||||.|+..|+.+    ++++|++.+.. +.    .+..|.||||+|+..   |+.+++++|++.|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            789999999999997    55666666554 43    578999999999999   9999999999999887633      


Q ss_pred             -----CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCC-------------CchHHHHHHHcCCHHHHHHHHh---
Q 040887          257 -----NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-------------GCNILHFAAKNGHADMVKAIIE---  315 (394)
Q Consensus       257 -----~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~L~~A~~~~~~~~~~~Ll~---  315 (394)
                           +..|.||||+|+..|+.+++++|++.+.+. +..+..             |.||||+|+..|+.+++++|++   
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                 367999999999999999999999997665 667665             9999999999999999999999   


Q ss_pred             CCCCCCcchhhccccCCCCCcHHHHHHH--cCCHH-------HHHHHHhcCCCCC-------CCcccCCCcHHHHHHhhh
Q 040887          316 IPGTNMTMDEVVNKMDEDGNTPLHLAAL--HGHSQ-------VVYALLRYGRSNP-------DLKNKQGMTAYKMALREY  379 (394)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~-------~~~~Ll~~g~ad~-------~~~~~~g~t~l~~a~~~~  379 (394)
                      .|++       ++.+|..|+||||+|+.  .++.+       ++++|+++| +++       +.+|..|.||||+|++.|
T Consensus       161 ~ga~-------~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g  232 (256)
T 2etb_A          161 QPAS-------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEG  232 (256)
T ss_dssp             CCCC-------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             cCCC-------cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhC
Confidence            8998       99999999999999999  78888       999999999 999       999999999999999999


Q ss_pred             hcchhhhHHH
Q 040887          380 YMQTSIAEKQ  389 (394)
Q Consensus       380 ~~~~~~~~~~  389 (394)
                      +.+......+
T Consensus       233 ~~~~v~~Ll~  242 (256)
T 2etb_A          233 KIEIFRHILQ  242 (256)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHh
Confidence            9877644443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.5e-32  Score=231.31  Aligned_cols=190  Identities=18%  Similarity=0.151  Sum_probs=164.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhC---CCC------CCCCCCCChHHHHHhc---CCHHHHHHHHhcCccc----
Q 040887          190 CKNIEDKSPLSLAIEMGNTDVLEYILRSL---PSG------ISWSSGKSPLQVATKK---RNLGVCYLLEVNGYSA----  253 (394)
Q Consensus       190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~---~~~------~~~~~~~~~l~~a~~~---~~~~~~~~L~~~g~~~----  253 (394)
                      ..+..|.||||.|+..|+.++++.|++.+   ...      ..+..|.||||+|+..   |+.+++++|++.|++.    
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence            46778999999999999999999888742   222      2367899999999986   8999999999998753    


Q ss_pred             ---cc----cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccC--------------CCchHHHHHHHcCCHHHHHH
Q 040887          254 ---LK----KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTD--------------NGCNILHFAAKNGHADMVKA  312 (394)
Q Consensus       254 ---~~----~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~L~~A~~~~~~~~~~~  312 (394)
                         +.    .+..|.||||+|+..|+.+++++|++.+.+. +..+.              .|.||||+|+..|+.+++++
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence               22    5668999999999999999999999997666 66665              79999999999999999999


Q ss_pred             HHh---CCCCCCcchhhccccCCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCCCC-------CcccCCCcHHH
Q 040887          313 IIE---IPGTNMTMDEVVNKMDEDGNTPLHLAALHGH---------SQVVYALLRYGRSNPD-------LKNKQGMTAYK  373 (394)
Q Consensus       313 Ll~---~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~ad~~-------~~~~~g~t~l~  373 (394)
                      |++   .|++       ++.+|..|+||||+|+..|+         .+++++|+++| ++++       .+|..|.||||
T Consensus       167 Ll~~~~~gad-------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~  238 (273)
T 2pnn_A          167 LLQNSWQPAD-------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLA  238 (273)
T ss_dssp             HHHCSSCCCC-------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHH
T ss_pred             HHhcccCCCC-------ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHH
Confidence            999   8998       99999999999999999998         89999999999 9996       59999999999


Q ss_pred             HHHhhhhcchhhhHH
Q 040887          374 MALREYYMQTSIAEK  388 (394)
Q Consensus       374 ~a~~~~~~~~~~~~~  388 (394)
                      +|++.|+.+......
T Consensus       239 ~A~~~g~~~iv~~Ll  253 (273)
T 2pnn_A          239 LAASSGKIGVLAYIL  253 (273)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHhChHHHHHHHH
Confidence            999999987764443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.98  E-value=2.2e-34  Score=249.87  Aligned_cols=268  Identities=15%  Similarity=0.101  Sum_probs=183.5

Q ss_pred             hhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCC--cccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCc
Q 040887           32 HHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFL--INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAP  109 (394)
Q Consensus        32 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  109 (394)
                      -+.+...+.++.||||+||+.|+.++|++|++.++..  .+..+..|.||||+|+..|+.++|++|+++|+++.      
T Consensus        82 ~~~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~------  155 (376)
T 2aja_A           82 WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI------  155 (376)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH------
T ss_pred             HHHHHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------
Confidence            3445667778889999999999999999999987521  22345567889999999999999999999987531      


Q ss_pred             chhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCcc
Q 040887          110 VDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSC  189 (394)
Q Consensus       110 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  189 (394)
                        .....+.. .||||.|+..+                  +.                       +++++|++.|+++..
T Consensus       156 --~~~i~~~~-~TpLh~Aa~~G------------------~~-----------------------eiv~~Ll~~ga~~~~  191 (376)
T 2aja_A          156 --MAMIQAEN-YHAFRLAAENG------------------HL-----------------------HVLNRLCELAPTEAT  191 (376)
T ss_dssp             --HHHHSHHH-HHHHHHHHHTT------------------CH-----------------------HHHHHHHHSCGGGHH
T ss_pred             --ccccCCCC-CCHHHHHHHCC------------------CH-----------------------HHHHHHHHcCCccch
Confidence              01222223 88999998776                  33                       899999999888652


Q ss_pred             -ccCCCCCcHHHHHH-HcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHH
Q 040887          190 -CKNIEDKSPLSLAI-EMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLA  267 (394)
Q Consensus       190 -~~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a  267 (394)
                       ..+..|.||||+|+ ..|+.+++++|++.+.      .+.|||+.|+..|+.+++++|++.|++++..+    ++++.|
T Consensus       192 ~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A  261 (376)
T 2aja_A          192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLS  261 (376)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTT
T ss_pred             hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHH
Confidence             25666889999999 9999999999987542      37899999999999999999999988876554    367778


Q ss_pred             HHcCCHHHH------------HHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC
Q 040887          268 CKNGHANVM------------VELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN  335 (394)
Q Consensus       268 ~~~~~~~~v------------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~  335 (394)
                      +..|+.+++            +.|+..+                   ..+..+.+++|++.+.......  .......++
T Consensus       262 ~~~g~~~vv~~~~~~~~~~~~~~li~~~-------------------~~~~~~~~~~Ll~~~~vk~l~~--~g~~~n~~~  320 (376)
T 2aja_A          262 NPDGVFDLVTKSECLQGFYMLRNLIRRN-------------------DEVLLDDIRFLLSIPGIKALAP--TATIPGDAN  320 (376)
T ss_dssp             SSSSCCCCSSHHHHHHHHHHHHHHHHHC-------------------CGGGHHHHHHHHTSTTTGGGSS--CCSSTTCCC
T ss_pred             HHCCChhhhcHHhhhhhHHHHHHHHHcc-------------------hhhHHHHHHHHHhChhhhhhhc--cCCCCCCcc
Confidence            888877643            3333331                   1134677888887654210000  112234677


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       336 t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      ||||+|+..|+.+++++|++.|    .+++..|.|++.+|..+|..+..
T Consensus       321 ~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~  365 (376)
T 2aja_A          321 ELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLR  365 (376)
T ss_dssp             HHHHHHHHHTCTTHHHHHTTSH----HHHHSCC----------------
T ss_pred             HHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhccccccccccccHH
Confidence            9999999999999999999876    57888999999999999987765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=1.3e-31  Score=209.34  Aligned_cols=168  Identities=20%  Similarity=0.143  Sum_probs=148.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCC--CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC
Q 040887          195 DKSPLSLAIEMGNTDVLEYILRSLPS--GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH  272 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~  272 (394)
                      +.+|||.|+..|+.+++++|++.+..  +..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            46899999999999999999987654  5567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887          273 ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA  352 (394)
Q Consensus       273 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  352 (394)
                      .+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.|++       ++.+|..|+||||+|+..|+.+++++
T Consensus        82 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~~~~~  153 (172)
T 3v30_A           82 TDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-------LTTEADSGYTPMDLAVALGYRKVQQV  153 (172)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------ccccCCCCCCHHHHHHHhCcHHHHHH
Confidence            99999999987665 88899999999999999999999999999999       89999999999999999999999999


Q ss_pred             HHhcCCCCCCCcccCCCcH
Q 040887          353 LLRYGRSNPDLKNKQGMTA  371 (394)
Q Consensus       353 Ll~~g~ad~~~~~~~g~t~  371 (394)
                      |+++| +++..++..|.||
T Consensus       154 L~~~~-~~~~~~~~~~~~p  171 (172)
T 3v30_A          154 IENHI-LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHH-HHHSCC-------
T ss_pred             HHHHH-HHHhcccCCCCCC
Confidence            99999 8999999988887

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=7.3e-32  Score=226.69  Aligned_cols=189  Identities=23%  Similarity=0.275  Sum_probs=153.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCC---CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCc-cccccCCCCCcHHHHHH---
Q 040887          196 KSPLSLAIEMGNTDVLEYILRSLP---SGISWSSGKSPLQVATKKRNLGVCYLLEVNGY-SALKKNKETLYPIHLAC---  268 (394)
Q Consensus       196 ~~~l~~a~~~~~~~~~~~ll~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~-~~~~~~~~g~~~l~~a~---  268 (394)
                      .+++|.|+..++.+.++.+++...   .+..+..|.||||+|+..|+.+++++|++.|. +++..+..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            456677888888888777765422   35666788888888888888888888888887 88888888888988888   


Q ss_pred             --HcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCC
Q 040887          269 --KNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH  346 (394)
Q Consensus       269 --~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  346 (394)
                        ..++.+++++|++.+... +..+..|.||||+|+..|+.+++++|++.|++       ++.+|..|+||||+|+..|+
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-------~n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-------VNVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTC
T ss_pred             hhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-------CCCCCCCCCCHHHHHHHCCC
Confidence              567788888888887554 66777888999999988888999999988888       88888888999999998888


Q ss_pred             HHHHHHHHh-cCCCCCCCcccCCCcHHHHHHhhhhcchhhhHHHhhhc
Q 040887          347 SQVVYALLR-YGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEKSM  393 (394)
Q Consensus       347 ~~~~~~Ll~-~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~  393 (394)
                      .+++++|++ .| ++++.+|..|.|||++|++.|+.+......++.-+
T Consensus       229 ~~iv~~Ll~~~g-ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          229 KEIAGLLLAVPS-CDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             HHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhcCC-CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            999999888 66 88888888899999999888887776655554433

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=6e-31  Score=209.34  Aligned_cols=160  Identities=19%  Similarity=0.222  Sum_probs=93.1

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHH
Q 040887          190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC  268 (394)
Q Consensus       190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~  268 (394)
                      .++..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            3455566666666666666666666654322 334445556666666666666666666656555555555566666666


Q ss_pred             HcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHH
Q 040887          269 KNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ  348 (394)
Q Consensus       269 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  348 (394)
                      ..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++       ++.+|..|.||||+|+..|+.+
T Consensus       110 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD-------ISARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-------CCCcCCCCCCHHHHHHHhCcHH
Confidence            666666666555554433 55555556666666666666666666665555       5555555666666666666666


Q ss_pred             HHHHHHhcC
Q 040887          349 VVYALLRYG  357 (394)
Q Consensus       349 ~~~~Ll~~g  357 (394)
                      ++++|+++|
T Consensus       182 ~v~~Ll~~~  190 (192)
T 2rfm_A          182 VIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            666655544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.5e-31  Score=222.23  Aligned_cols=188  Identities=18%  Similarity=0.084  Sum_probs=161.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----hCCC-CCC----CCCCCChHHHHH---hcCCHHHHHHHHhcCcc--------
Q 040887          193 IEDKSPLSLAIEMGNTDVLEYILR----SLPS-GIS----WSSGKSPLQVAT---KKRNLGVCYLLEVNGYS--------  252 (394)
Q Consensus       193 ~~~~~~l~~a~~~~~~~~~~~ll~----~~~~-~~~----~~~~~~~l~~a~---~~~~~~~~~~L~~~g~~--------  252 (394)
                      ..+.++|+.|+..|+.+.++.|++    .+.. +..    +..|.||||+|+   ..|+.+++++|++.|++        
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            457899999999999996555554    5443 222    266999999999   67999999999998854        


Q ss_pred             ---ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc--------------CCCchHHHHHHHcCCHHHHHHHHh
Q 040887          253 ---ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT--------------DNGCNILHFAAKNGHADMVKAIIE  315 (394)
Q Consensus       253 ---~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~~~~Ll~  315 (394)
                         .+..+..|.||||+|+..|+.+++++|++.+.+. +..+              ..|.||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence               3445558999999999999999999999987666 6666              589999999999999999999999


Q ss_pred             ---CCCCCCcchhhccccCCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCCC-------CCcccCCCcHHHHHH
Q 040887          316 ---IPGTNMTMDEVVNKMDEDGNTPLHLAALHGH---------SQVVYALLRYGRSNP-------DLKNKQGMTAYKMAL  376 (394)
Q Consensus       316 ---~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~ad~-------~~~~~~g~t~l~~a~  376 (394)
                         .|++       ++.+|..|+||||+|+..++         .+++++|+++| +++       +.+|..|.||||+|+
T Consensus       162 ~~~~ga~-------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~  233 (260)
T 3jxi_A          162 NGHKQAD-------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAA  233 (260)
T ss_dssp             CSSCCCC-------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             ccccCCC-------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHH
Confidence               8988       99999999999999999888         79999999999 998       789999999999999


Q ss_pred             hhhhcchhhhHHH
Q 040887          377 REYYMQTSIAEKQ  389 (394)
Q Consensus       377 ~~~~~~~~~~~~~  389 (394)
                      +.|+.+......+
T Consensus       234 ~~g~~~~v~~Ll~  246 (260)
T 3jxi_A          234 KTGKIGIFQHIIR  246 (260)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            9999887654443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=5e-31  Score=221.59  Aligned_cols=160  Identities=20%  Similarity=0.244  Sum_probs=148.2

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHH-----hcCCHHHHHHHHhcCccccccCCCCCc
Q 040887          190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVAT-----KKRNLGVCYLLEVNGYSALKKNKETLY  262 (394)
Q Consensus       190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~-----~~~~~~~~~~L~~~g~~~~~~~~~g~~  262 (394)
                      ..|..|.||||+|+..|+.+++++|++.+.  .+..+..|.||||+|+     ..+..+++++|++.|.+.+..+..|.|
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  185 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT  185 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCC
Confidence            467789999999999999999999999874  4667788999999999     567779999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHh-CCCCCCcchhhccccCCCCCcHHHHH
Q 040887          263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTPLHLA  341 (394)
Q Consensus       263 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~L~~A  341 (394)
                      |||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+..|+.+++++|++ .|++       ++.+|..|+||||+|
T Consensus       186 pLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-------~~~~d~~g~TpL~~A  257 (276)
T 4hbd_A          186 ALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD-------ISLTDRDGSTALMVA  257 (276)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-------TTCCCTTSCCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-------CcCcCCCCCCHHHHH
Confidence            999999999999999999997766 8899999999999999999999999999 8988       999999999999999


Q ss_pred             HHcCCHHHHHHHHhcC
Q 040887          342 ALHGHSQVVYALLRYG  357 (394)
Q Consensus       342 ~~~~~~~~~~~Ll~~g  357 (394)
                      +..|+.+++++|++++
T Consensus       258 ~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          258 LDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHTCHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHhcc
Confidence            9999999999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.2e-30  Score=207.57  Aligned_cols=161  Identities=22%  Similarity=0.136  Sum_probs=150.6

Q ss_pred             CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHH
Q 040887          221 GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHF  300 (394)
Q Consensus       221 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  300 (394)
                      +..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~  107 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMW  107 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence            445678999999999999999999999999999999999999999999999999999999997665 8889999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhh
Q 040887          301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY  380 (394)
Q Consensus       301 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~  380 (394)
                      |+..++.+++++|+++|++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+..|+
T Consensus       108 A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGAN-------VNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCc
Confidence            9999999999999999999       9999999999999999999999999999999 9999999999999999999998


Q ss_pred             cchhhhHHHh
Q 040887          381 MQTSIAEKQE  390 (394)
Q Consensus       381 ~~~~~~~~~~  390 (394)
                      .+......+.
T Consensus       180 ~~~v~~Ll~~  189 (192)
T 2rfm_A          180 QEVIKIFTEV  189 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            8776554443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2.5e-30  Score=200.96  Aligned_cols=155  Identities=19%  Similarity=0.153  Sum_probs=82.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCH
Q 040887          195 DKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA  273 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~  273 (394)
                      |.||||.|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            44555555555555555555554322 33344455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL  353 (394)
Q Consensus       274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  353 (394)
                      +++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+..|+.+++++|
T Consensus        83 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~l~~A~~~~~~~~~~~L  154 (167)
T 3v31_A           83 DIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-------PTIETDSGYNSMDLAVALGYRSVQQVI  154 (167)
T ss_dssp             HHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            5555555544333 44455555555555555555555555555555       455555555555555555555555555


Q ss_pred             HhcC
Q 040887          354 LRYG  357 (394)
Q Consensus       354 l~~g  357 (394)
                      ++++
T Consensus       155 ~~~~  158 (167)
T 3v31_A          155 ESHL  158 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.4e-30  Score=200.03  Aligned_cols=157  Identities=25%  Similarity=0.297  Sum_probs=132.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCH
Q 040887          195 DKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA  273 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~  273 (394)
                      ..+||+.|+..|+.+++++|++.+.. +..+..|.||||+|+. ++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            45888999999999999988876543 5566778899998888 888888888888888888888889999999999999


Q ss_pred             HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL  353 (394)
Q Consensus       274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  353 (394)
                      +++++|++.+.+. +.++..|.||||+|+..|+.+++++|++.|++.      ++.+|..|+||||+|+..|+.+++++|
T Consensus        84 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~g~t~l~~A~~~~~~~~~~~L  156 (162)
T 1ihb_A           84 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYGRNEVVSLM  156 (162)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC------CCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999888876554 778888899999999999999999999888874      578888888999999999999999999


Q ss_pred             HhcCCCC
Q 040887          354 LRYGRSN  360 (394)
Q Consensus       354 l~~g~ad  360 (394)
                      +++| ||
T Consensus       157 l~~G-Ad  162 (162)
T 1ihb_A          157 QANG-AG  162 (162)
T ss_dssp             HHTC---
T ss_pred             HHhC-CC
Confidence            9888 64

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=8e-30  Score=198.29  Aligned_cols=158  Identities=23%  Similarity=0.276  Sum_probs=144.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHc
Q 040887          192 NIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN  270 (394)
Q Consensus       192 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~  270 (394)
                      ...+.++++.|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            34567899999999999999999997644 66678899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHH
Q 040887          271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV  350 (394)
Q Consensus       271 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  350 (394)
                      |+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|+++|++       ++.+|..|.||||+|+..|+.+++
T Consensus        91 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-------VNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHhCCHHHH
Confidence            9999999999987665 78899999999999999999999999999999       899999999999999999999999


Q ss_pred             HHHHhcC
Q 040887          351 YALLRYG  357 (394)
Q Consensus       351 ~~Ll~~g  357 (394)
                      ++|+++|
T Consensus       163 ~~L~~~G  169 (169)
T 2y1l_E          163 EILQKLN  169 (169)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHcC
Confidence            9999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1e-29  Score=197.42  Aligned_cols=152  Identities=20%  Similarity=0.263  Sum_probs=143.0

Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887          226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG  305 (394)
Q Consensus       226 ~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  305 (394)
                      .|.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcC
Confidence            4789999999999999999999999999999999999999999999999999999996665 888999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887          306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI  385 (394)
Q Consensus       306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~  385 (394)
                      +.+++++|++.|++       ++.+|..|+||||+|+..|+.+++++|+++|.. ++.+|..|.||+++|++.|+.+...
T Consensus        81 ~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           81 YTDIVKMLLDCGVD-------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             CHHHHHHHHHHTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHCCCC-------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            99999999999999       999999999999999999999999999999877 6889999999999999999877753


Q ss_pred             h
Q 040887          386 A  386 (394)
Q Consensus       386 ~  386 (394)
                      .
T Consensus       153 ~  153 (167)
T 3v31_A          153 V  153 (167)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=5.7e-30  Score=199.12  Aligned_cols=154  Identities=29%  Similarity=0.377  Sum_probs=144.5

Q ss_pred             CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887          225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN  304 (394)
Q Consensus       225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  304 (394)
                      ..+.++|+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            55678999999999999999999999999999999999999999999999999999987665 88899999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      |+.+++++|++.|++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|++.|+.+..
T Consensus        91 ~~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E           91 GHLEIVEVLLKNGAD-------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             TCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHcCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence            999999999999999       9999999999999999999999999999999 99999999999999999999987665


Q ss_pred             hhH
Q 040887          385 IAE  387 (394)
Q Consensus       385 ~~~  387 (394)
                      ...
T Consensus       163 ~~L  165 (169)
T 2y1l_E          163 EIL  165 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=8.6e-30  Score=194.73  Aligned_cols=150  Identities=22%  Similarity=0.250  Sum_probs=140.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHH
Q 040887          196 KSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANV  275 (394)
Q Consensus       196 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~  275 (394)
                      .++|+.|+..|+.+++++|++.+.....+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.++
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   82 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHH
Confidence            47999999999999999999988776678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          276 MVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL  353 (394)
Q Consensus       276 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  353 (394)
                      +++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+..|+.+++++|
T Consensus        83 v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           83 VEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999987665 88899999999999999999999999999998       899999999999999999999999987

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.1e-29  Score=194.24  Aligned_cols=147  Identities=27%  Similarity=0.298  Sum_probs=139.1

Q ss_pred             CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCH
Q 040887          228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA  307 (394)
Q Consensus       228 ~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  307 (394)
                      .++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChH
Confidence            579999999999999999999999876 5888999999999999999999999987665 88899999999999999999


Q ss_pred             HHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       308 ~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +++++|+++|++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+..|+.+..
T Consensus        81 ~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~  149 (153)
T 1awc_B           81 NIVEVLLKHGAD-------VNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHHHHHHTTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999       9999999999999999999999999999999 99999999999999999999987654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.3e-29  Score=196.51  Aligned_cols=152  Identities=21%  Similarity=0.219  Sum_probs=141.6

Q ss_pred             CCChHHHHHhcCCHHHHHHHHhcCcc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887          227 GKSPLQVATKKRNLGVCYLLEVNGYS-ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG  305 (394)
Q Consensus       227 ~~~~l~~a~~~~~~~~~~~L~~~g~~-~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  305 (394)
                      +.+|||.|+..|+.++++.|+..+.+ ++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            46899999999999999999999877 7889999999999999999999999999987665 888999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887          306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI  385 (394)
Q Consensus       306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~  385 (394)
                      +.+++++|++.|++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+..|+.+...
T Consensus        81 ~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A           81 YTDIVGLLLERDVD-------INIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             CHHHHHHHHTTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHcCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHH
Confidence            99999999999999       9999999999999999999999999999999 999999999999999999999877654


Q ss_pred             hH
Q 040887          386 AE  387 (394)
Q Consensus       386 ~~  387 (394)
                      ..
T Consensus       153 ~L  154 (172)
T 3v30_A          153 VI  154 (172)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1e-29  Score=199.68  Aligned_cols=166  Identities=20%  Similarity=0.194  Sum_probs=149.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887          194 EDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG  271 (394)
Q Consensus       194 ~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~  271 (394)
                      .+.++|+.|+..|+.+++++|++...  .+..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            46789999999999999999998743  3667788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887          272 HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       272 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  351 (394)
                      +.+++++|++.+.+. +..+..|.||||+|+..++.+++++|+++|++       ++.+|..|.|||++|+..++.++++
T Consensus        84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~tpl~~A~~~~~~~~~~  155 (179)
T 3f6q_A           84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-------VSICNKYGEMPVDKAKAPLRELLRE  155 (179)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------SSBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-------cchhccCCCCcHHHHHHHHHHHHHH
Confidence            999999999987665 88899999999999999999999999999999       8999999999999999999999999


Q ss_pred             HHHhcCCCCCCCcccCC
Q 040887          352 ALLRYGRSNPDLKNKQG  368 (394)
Q Consensus       352 ~Ll~~g~ad~~~~~~~g  368 (394)
                      +|+++| ++++..+..+
T Consensus       156 ~L~~~g-~~~~~~~~~~  171 (179)
T 3f6q_A          156 RAEKMG-QNLNRIPYKD  171 (179)
T ss_dssp             HHHHTT-CCCSCBCCCC
T ss_pred             HHHHhh-cCcccCCccc
Confidence            999999 9998776654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=4.1e-29  Score=191.75  Aligned_cols=152  Identities=22%  Similarity=0.245  Sum_probs=141.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhC--CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC
Q 040887          195 DKSPLSLAIEMGNTDVLEYILRSL--PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH  272 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~  272 (394)
                      +.+||+.|+..|+.+++++|++..  ..+..+..|.||||+ +..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            458999999999999999999985  557778889999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887          273 ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA  352 (394)
Q Consensus       273 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  352 (394)
                      .+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++. ++       ++.+|..|.||||+|+..|+.+++++
T Consensus        81 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-------~~~~~~~g~t~l~~A~~~~~~~~v~~  151 (156)
T 1bd8_A           81 LDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-------LHRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             HHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-------TTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-------CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            99999999987665 88899999999999999999999999999 77       89999999999999999999999999


Q ss_pred             HHhc
Q 040887          353 LLRY  356 (394)
Q Consensus       353 Ll~~  356 (394)
                      |+++
T Consensus       152 Ll~~  155 (156)
T 1bd8_A          152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9975

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.9e-29  Score=195.01  Aligned_cols=153  Identities=25%  Similarity=0.267  Sum_probs=142.5

Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887          226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG  305 (394)
Q Consensus       226 ~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  305 (394)
                      ...+||+.|+..|+.+++++|++.|++++.++..|.||||+|+. |+.+++++|++.+.+. +.++..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            45789999999999999999999999999999999999999999 9999999999987665 888999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CCCcccCCCcHHHHHHhhhhcchh
Q 040887          306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN-PDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad-~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +.+++++|+++|++       ++.+|..|+||||+|+..|+.+++++|+++| ++ ++.++..|.|||++|++.|+.+..
T Consensus        82 ~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~l~~A~~~~~~~~~  153 (162)
T 1ihb_A           82 FLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEVV  153 (162)
T ss_dssp             CHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc-CCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            99999999999998       9999999999999999999999999999999 66 699999999999999999987765


Q ss_pred             hhHH
Q 040887          385 IAEK  388 (394)
Q Consensus       385 ~~~~  388 (394)
                      ....
T Consensus       154 ~~Ll  157 (162)
T 1ihb_A          154 SLMQ  157 (162)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.5e-29  Score=196.15  Aligned_cols=158  Identities=25%  Similarity=0.264  Sum_probs=112.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC--CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHH
Q 040887          191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPS--GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC  268 (394)
Q Consensus       191 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~  268 (394)
                      .+..+.+||+.|+..|+.+++++|++....  ...+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            344567788888888888888888764333  333455667777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHH
Q 040887          269 KNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ  348 (394)
Q Consensus       269 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  348 (394)
                      ..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+. ++.+
T Consensus        84 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~a~~-~~~~  154 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-------PTKKNRDGNTPLDLVKD-GDTD  154 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCTGGGSCT-TCHH
T ss_pred             HcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CcccCCCCCChhHhHhc-CChH
Confidence            777777777777765554 66677777777777777777777777777777       67777777777777665 6777


Q ss_pred             HHHHHHhcC
Q 040887          349 VVYALLRYG  357 (394)
Q Consensus       349 ~~~~Ll~~g  357 (394)
                      ++++|++.|
T Consensus       155 i~~~L~~~g  163 (165)
T 3twr_A          155 IQDLLRGDA  163 (165)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHhhcc
Confidence            777777766

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1e-30  Score=215.19  Aligned_cols=180  Identities=13%  Similarity=0.023  Sum_probs=135.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC
Q 040887          193 IEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH  272 (394)
Q Consensus       193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~  272 (394)
                      ..|.|||+.|+..++.+.++.|++.+........+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            35899999999999999999999988776666788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC-cHHHHH--HHcCCHHH
Q 040887          273 ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN-TPLHLA--ALHGHSQV  349 (394)
Q Consensus       273 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~-t~L~~A--~~~~~~~~  349 (394)
                      .+++++|++.+.+. +.+|..|+||||+|+..|+.+++++|+++|++       ++.++..|. ||||+|  +..|+.++
T Consensus        83 ~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~~~~t~l~~a~~~~~g~~~~  154 (239)
T 1ycs_B           83 TEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-------VFAMTYSDMQTAADKCEEMEEGYTQC  154 (239)
T ss_dssp             HHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred             HHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------cceecCCCCcchHHHHHHhhhccHHH
Confidence            99999999987665 88999999999999999999999999999999       899998877 999999  78899999


Q ss_pred             HHHHHhcCCCCCCCc---------ccCCCcHHHHHHhhhhc
Q 040887          350 VYALLRYGRSNPDLK---------NKQGMTAYKMALREYYM  381 (394)
Q Consensus       350 ~~~Ll~~g~ad~~~~---------~~~g~t~l~~a~~~~~~  381 (394)
                      +++|+++| ++++..         +..+.++++++.+.|..
T Consensus       155 ~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~  194 (239)
T 1ycs_B          155 SQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGDC  194 (239)
T ss_dssp             HHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred             HHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCCCE
Confidence            99999999 888876         55688899888887753

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=7.6e-29  Score=194.75  Aligned_cols=154  Identities=23%  Similarity=0.293  Sum_probs=140.6

Q ss_pred             CCCCChHHHHHhcCCHHHHHHHHhc-CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHH
Q 040887          225 SSGKSPLQVATKKRNLGVCYLLEVN-GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAK  303 (394)
Q Consensus       225 ~~~~~~l~~a~~~~~~~~~~~L~~~-g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  303 (394)
                      ..+.++|+.|+..|+.++++.|++. +.+++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            4578999999999999999998887 6789999999999999999999999999999997665 8889999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcch
Q 040887          304 NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT  383 (394)
Q Consensus       304 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~  383 (394)
                      .|+.+++++|+++|++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|++.+..+.
T Consensus        82 ~~~~~~v~~Ll~~g~~-------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~  153 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD-------INAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELL  153 (179)
T ss_dssp             TTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHH
Confidence            9999999999999999       9999999999999999999999999999999 9999999999999999999887665


Q ss_pred             hhhH
Q 040887          384 SIAE  387 (394)
Q Consensus       384 ~~~~  387 (394)
                      ....
T Consensus       154 ~~~L  157 (179)
T 3f6q_A          154 RERA  157 (179)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=4.4e-32  Score=221.04  Aligned_cols=195  Identities=13%  Similarity=0.072  Sum_probs=164.3

Q ss_pred             HHHHhcCCCCcc--ccCCCCCcHHHHHHHcCCHHHHHHHHHhCC-CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCcccc
Q 040887          178 YFLVSLDPKLSC--CKNIEDKSPLSLAIEMGNTDVLEYILRSLP-SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSAL  254 (394)
Q Consensus       178 ~~l~~~~~~~~~--~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~  254 (394)
                      +.|++.+.++..  ..+.++.||||.|+..|+.+++++|++.+. .+..+..|.||||+|+..|+.+++++|++.|++++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n   81 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN   81 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            456777766552  345567789999999999999999999764 46677899999999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc-CCCchHHHHH--HHcCCHHHHHHHHhCCCCCCcchhhccccC
Q 040887          255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT-DNGCNILHFA--AKNGHADMVKAIIEIPGTNMTMDEVVNKMD  331 (394)
Q Consensus       255 ~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  331 (394)
                      .++..|.||||+|+..|+.+++++|++.+.+. +..+ ..|.||||+|  +..|+.+++++|++.|++       ++.+|
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-------~~~~~  153 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQS-------MGLMN  153 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-------TTTSG
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-------ccccc
Confidence            99999999999999999999999999998777 5554 6999999999  999999999999999998       89999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCC--CCCcccCCCcHHHHHHhhhhcchh
Q 040887          332 EDGNTPLHLAALHGHSQVVYALLRYGRSN--PDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       332 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad--~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      ..|.||++.++....   .++|++.| ++  ++.+|..|+||||+|+..|+.+..
T Consensus       154 ~~~~~~l~~~~~~~~---~~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v  204 (229)
T 2vge_A          154 SGAVYALWDYSAEFG---DELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYV  204 (229)
T ss_dssp             GGEEEESSCBCCSST---TBCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred             CCchHHHHHHhhccc---cccCcccc-ccccccccCCCcccHHHHHHHcCCccee
Confidence            999999996655443   36788888 88  678899999999999999987654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=4.7e-29  Score=193.31  Aligned_cols=152  Identities=23%  Similarity=0.228  Sum_probs=138.6

Q ss_pred             CCCCCCChHHHHHhcCCHHHHHHHHh-cCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHH
Q 040887          223 SWSSGKSPLQVATKKRNLGVCYLLEV-NGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFA  301 (394)
Q Consensus       223 ~~~~~~~~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  301 (394)
                      .+..+.+||+.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence            34667899999999999999999987 56677888889999999999999999999999987665 88999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhc
Q 040887          302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYM  381 (394)
Q Consensus       302 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~  381 (394)
                      +..|+.+++++|++.|++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|.+ +..
T Consensus        83 ~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~  153 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAV-------VNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDT  153 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCH
T ss_pred             HHcCcHHHHHHHHhCCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CCh
Confidence            999999999999999999       9999999999999999999999999999999 9999999999999999887 554


Q ss_pred             chh
Q 040887          382 QTS  384 (394)
Q Consensus       382 ~~~  384 (394)
                      +..
T Consensus       154 ~i~  156 (165)
T 3twr_A          154 DIQ  156 (165)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.1e-28  Score=187.85  Aligned_cols=149  Identities=24%  Similarity=0.265  Sum_probs=138.6

Q ss_pred             CCChHHHHHhcCCHHHHHHHHhc-CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887          227 GKSPLQVATKKRNLGVCYLLEVN-GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG  305 (394)
Q Consensus       227 ~~~~l~~a~~~~~~~~~~~L~~~-g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  305 (394)
                      +.+||+.|+..|+.++++.|++. +.+++..+..|.||||+ +..|+.+++++|++.+.+. +..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            46899999999999999999888 45899999999999999 9999999999999987665 889999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887          306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI  385 (394)
Q Consensus       306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~  385 (394)
                      +.+++++|++.|++       ++.+|..|+||||+|+..|+.+++++|++.  ++++.+|..|.|||++|+..|+.+...
T Consensus        80 ~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~  150 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD-------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             CHHHHHHHHHTTCC-------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             cHHHHHHHHHcCCC-------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            99999999999999       999999999999999999999999999998  899999999999999999999876654


Q ss_pred             h
Q 040887          386 A  386 (394)
Q Consensus       386 ~  386 (394)
                      .
T Consensus       151 ~  151 (156)
T 1bd8_A          151 I  151 (156)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=5e-31  Score=228.89  Aligned_cols=236  Identities=16%  Similarity=0.051  Sum_probs=168.6

Q ss_pred             CchHHHHHHh-cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcC
Q 040887           42 GSSLLHVAAK-SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG  120 (394)
Q Consensus        42 g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  120 (394)
                      +.+++++|+. .++.++++++++.+.        +++||||+|+..|+.+++++|++.|+.....        .      
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~--------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~--------~------  122 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGI--------KSEVICFVAAITGCSSALDTLCLLLTSDEIV--------K------  122 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTC--------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSC--------C------
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCC--------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHH--------H------
Confidence            4578888877 578899999998854        2459999999999999999999987621100        0      


Q ss_pred             CcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHH
Q 040887          121 NTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLS  200 (394)
Q Consensus       121 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  200 (394)
                                                                                           ..+..|.||||
T Consensus       123 ---------------------------------------------------------------------~~~~~~~tpL~  133 (376)
T 2aja_A          123 ---------------------------------------------------------------------VIQAENYQAFR  133 (376)
T ss_dssp             -----------------------------------------------------------------------CHHHHHHHH
T ss_pred             ---------------------------------------------------------------------HhccCCCCHHH
Confidence                                                                                 01112456888


Q ss_pred             HHHHcCCHHHHHHHHHhCCC----CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccc--cCCCCCcHHHHHH-HcCCH
Q 040887          201 LAIEMGNTDVLEYILRSLPS----GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK--KNKETLYPIHLAC-KNGHA  273 (394)
Q Consensus       201 ~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~--~~~~g~~~l~~a~-~~~~~  273 (394)
                      +|+..|+.+++++|++.++.    +..... .||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+ ..|+.
T Consensus       134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~  212 (376)
T 2aja_A          134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH  212 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH
Confidence            88888888888888887642    222222 7899999999999999999999988776  7788899999999 99999


Q ss_pred             HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHc---------
Q 040887          274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH---------  344 (394)
Q Consensus       274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---------  344 (394)
                      +++++|++.+.        .|.||||+|+.+|+.+++++|+++|++       ++.++.    +++.|+..         
T Consensus       213 eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~-------~~~~~~----~l~~A~~~g~~~vv~~~  273 (376)
T 2aja_A          213 NVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNR-------LKEMHD----AFKLSNPDGVFDLVTKS  273 (376)
T ss_dssp             HHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHH-------HHHHHT----TTTTTSSSSCCCCSSHH
T ss_pred             HHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcc-------cccccH----HHHHHHHCCChhhhcHH
Confidence            99999988542        378999999999999999999988876       433321    22222222         


Q ss_pred             ------------------CCHHHHHHHHhcCCC----CCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          345 ------------------GHSQVVYALLRYGRS----NPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       345 ------------------~~~~~~~~Ll~~g~a----d~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                                        +..+.+++|++.+..    +.......+.||+++|++.|+.+......
T Consensus       274 ~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl  339 (376)
T 2aja_A          274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL  339 (376)
T ss_dssp             HHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHT
T ss_pred             hhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHH
Confidence                              234566777764311    11223345678999999999988765443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.9e-28  Score=187.73  Aligned_cols=143  Identities=21%  Similarity=0.149  Sum_probs=117.4

Q ss_pred             CCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCch-HHHHH
Q 040887          223 SWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCN-ILHFA  301 (394)
Q Consensus       223 ~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A  301 (394)
                      ....+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+ .|+.+++++|++.+.+. +.++..|.| |||+|
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA   85 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence            4467889999999999999999999999999999999999999985 99999999999987665 889999999 99999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHH
Q 040887          302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA  375 (394)
Q Consensus       302 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a  375 (394)
                      +..|+.+++++|+++|++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.++..|.||.+-+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~-------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGAR-------LDVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCC-------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHCCCHHHHHHHHHcCCC-------CcccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence            999999999999999999       9999999999999999999999999999999 99999999999998744

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3e-27  Score=176.62  Aligned_cols=130  Identities=21%  Similarity=0.178  Sum_probs=112.7

Q ss_pred             CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCC-CchHHH
Q 040887          221 GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILH  299 (394)
Q Consensus       221 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~  299 (394)
                      +..+..+.||||.|+..++.+++++|++.|++++.++..|.||||+|+. |+.+++++|++.+.+. +.++.. |.||||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~   83 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVH   83 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHH
Confidence            4456778888888888888888888888888888888899999999999 9999999999887665 778888 899999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 040887          300 FAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN  360 (394)
Q Consensus       300 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad  360 (394)
                      +|+..|+.+++++|+++|++       ++.+|..|+||||+|+..++.+++++|+++| +|
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G-ad  136 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHRAGAR-------LDVCDAWGRLPVDLAEEQGHRDIARYLHAAT-GD  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTCCC-------CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH-CC
T ss_pred             HHHHcCCHHHHHHHHHcCCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence            99999999999999999988       8888999999999999999999999999988 64

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=2.6e-28  Score=191.50  Aligned_cols=162  Identities=12%  Similarity=-0.003  Sum_probs=117.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCH----HHHHHHHhcCccccccCCCCCcHHHHHHHc
Q 040887          195 DKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNL----GVCYLLEVNGYSALKKNKETLYPIHLACKN  270 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~  270 (394)
                      ++++|+.|+..|+.+.++.++..+.....+..|.||||+|+..++.    +++++|++.|++++.++..|+||||+|+..
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~   85 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG   85 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            4567888888888888888877654433335678888888887764    478888888888888888888888888887


Q ss_pred             CC------HHHHHHHHHhcCCCCccccCCCc-hHHHHHHHcC-----CHHHHHHHHh-CCCCCCcchhhccccCCCCCcH
Q 040887          271 GH------ANVMVELLKEWRCPSLFVTDNGC-NILHFAAKNG-----HADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTP  337 (394)
Q Consensus       271 ~~------~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~  337 (394)
                      ++      .+++++|++.+.+. +.+|..|. ||||+|+..+     ..+++++|++ .|++       ++.+|..|+||
T Consensus        86 ~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-------~~~~d~~G~Tp  157 (186)
T 3t8k_A           86 GGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-------LLIKDKWGLTA  157 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-------TTCCCTTSCCH
T ss_pred             CCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-------CcccCCCCCCH
Confidence            76      45677777776555 77777777 7777777733     3457777777 7777       77777777777


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCcc
Q 040887          338 LHLAALHGHSQVVYALLRYGRSNPDLKN  365 (394)
Q Consensus       338 L~~A~~~~~~~~~~~Ll~~g~ad~~~~~  365 (394)
                      ||+|+..|+.+++++|+++. .+.++++
T Consensus       158 L~~A~~~~~~~~v~~L~~~~-~~~~~~~  184 (186)
T 3t8k_A          158 LEFVKRCQKPIALKMMEDYI-KKYNLKE  184 (186)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH-HHHTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHHH-HHHhccc
Confidence            77777777777777777765 4444443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.3e-27  Score=196.67  Aligned_cols=152  Identities=25%  Similarity=0.245  Sum_probs=109.9

Q ss_pred             CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887          225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN  304 (394)
Q Consensus       225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  304 (394)
                      ..|.||||.|+..+..+.++.|++.|++++.. ..|.||||.|+..|+.+++++|++.+.+. +.+|..|.||||+|+..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            46899999999999999999999999999864 78899999999999999999999988754 88999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCC-cHHHHH--Hhhhhc
Q 040887          305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGM-TAYKMA--LREYYM  381 (394)
Q Consensus       305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~-t~l~~a--~~~~~~  381 (394)
                      |+.+++++|+++|++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.++..|. ||+++|  +..|+.
T Consensus        81 g~~~~v~~Ll~~ga~-------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~  152 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVN-------VNAADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYT  152 (239)
T ss_dssp             TCHHHHHHHHHHTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             CCHHHHHHHHHcCCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccH
Confidence            999999999999999       9999999999999999999999999999999 99999998888 999999  677776


Q ss_pred             chhhh
Q 040887          382 QTSIA  386 (394)
Q Consensus       382 ~~~~~  386 (394)
                      +....
T Consensus       153 ~~~~~  157 (239)
T 1ycs_B          153 QCSQF  157 (239)
T ss_dssp             CHHHH
T ss_pred             HHHHH
Confidence            65433

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.5e-27  Score=194.26  Aligned_cols=159  Identities=17%  Similarity=0.079  Sum_probs=138.2

Q ss_pred             HHHHHhCCC----CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCC
Q 040887          212 EYILRSLPS----GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPS  287 (394)
Q Consensus       212 ~~ll~~~~~----~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~  287 (394)
                      +.|++.+..    +.....+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. 
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-   80 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-   80 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-
Confidence            445554333    334456778899999999999999999999999999999999999999999999999999987665 


Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC-CCCCcHHHHH--HHcCCHHHHHHHHhcCCCCCCCc
Q 040887          288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD-EDGNTPLHLA--ALHGHSQVVYALLRYGRSNPDLK  364 (394)
Q Consensus       288 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~g~ad~~~~  364 (394)
                      +..|..|+||||+|+..|+.+++++|++.|++       ++.++ ..|+||||+|  +..|+.+++++|++.| ++++.+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-------~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~  152 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAA-------IFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLM  152 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTS
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccc
Confidence            88999999999999999999999999999999       88886 6999999999  9999999999999999 999999


Q ss_pred             ccCCCcHHHHHHhhh
Q 040887          365 NKQGMTAYKMALREY  379 (394)
Q Consensus       365 ~~~g~t~l~~a~~~~  379 (394)
                      |..|.||++.+...+
T Consensus       153 ~~~~~~~l~~~~~~~  167 (229)
T 2vge_A          153 NSGAVYALWDYSAEF  167 (229)
T ss_dssp             GGGEEEESSCBCCSS
T ss_pred             cCCchHHHHHHhhcc
Confidence            999999998655443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=7e-26  Score=167.10  Aligned_cols=126  Identities=40%  Similarity=0.573  Sum_probs=116.3

Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887          226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG  305 (394)
Q Consensus       226 ~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  305 (394)
                      +|.||||.|+..++.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.+... +.++..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence            4788999999999999999999999999999999999999999999999999999987665 788899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 040887          306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN  360 (394)
Q Consensus       306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad  360 (394)
                      +.+++++|++.|++       ++.+|..|+||||+|+..++.+++++|+++| +|
T Consensus        80 ~~~~~~~Ll~~g~~-------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G-ad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-AY  126 (126)
T ss_dssp             CHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CC
T ss_pred             hHHHHHHHHHcCCC-------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CC
Confidence            99999999999998       8999999999999999999999999999998 65

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=3.3e-27  Score=185.19  Aligned_cols=148  Identities=13%  Similarity=0.037  Sum_probs=130.7

Q ss_pred             CCChHHHHHhcCCHHHHHHHHhcCccccccC-CCCCcHHHHHHHcCCH----HHHHHHHHhcCCCCccccCCCchHHHHH
Q 040887          227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKN-KETLYPIHLACKNGHA----NVMVELLKEWRCPSLFVTDNGCNILHFA  301 (394)
Q Consensus       227 ~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~-~~g~~~l~~a~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  301 (394)
                      +.++|+.|++.|+.+.++.+...+.+  .++ ..|+||||+|+..++.    +++++|++.+.+. +.++..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            46899999999999888888887753  344 6799999999999975    5899999987766 88999999999999


Q ss_pred             HHcCC------HHHHHHHHhCCCCCCcchhhccccCCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCCCCcccCC
Q 040887          302 AKNGH------ADMVKAIIEIPGTNMTMDEVVNKMDEDGN-TPLHLAALHG-----HSQVVYALLR-YGRSNPDLKNKQG  368 (394)
Q Consensus       302 ~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~g~ad~~~~~~~g  368 (394)
                      +..++      .+++++|+++|++       +|.+|..|+ ||||+|+..+     +.+++++|++ +| +|++.+|..|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad-------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G  154 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD-------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWG  154 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC-------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTS
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC-------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCC
Confidence            99987      6889999999999       999999999 9999999954     4579999999 88 9999999999


Q ss_pred             CcHHHHHHhhhhcchhh
Q 040887          369 MTAYKMALREYYMQTSI  385 (394)
Q Consensus       369 ~t~l~~a~~~~~~~~~~  385 (394)
                      +||||+|.+.|+.+...
T Consensus       155 ~TpL~~A~~~~~~~~v~  171 (186)
T 3t8k_A          155 LTALEFVKRCQKPIALK  171 (186)
T ss_dssp             CCHHHHHHTTTCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHH
Confidence            99999999999876643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1.8e-26  Score=172.36  Aligned_cols=128  Identities=16%  Similarity=0.109  Sum_probs=119.5

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccc
Q 040887          250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK  329 (394)
Q Consensus       250 g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  329 (394)
                      +.+++..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+. ++.+++++|+++|++       ++.
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-------~~~   72 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-------PNC   72 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-------SSC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-------CCC
Confidence            5678889999999999999999999999999987665 8889999999999999 999999999999999       999


Q ss_pred             cCCC-CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887          330 MDED-GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE  387 (394)
Q Consensus       330 ~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~  387 (394)
                      +|.. |+||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+..++.+.....
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~L  130 (136)
T 1d9s_A           73 ADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYL  130 (136)
T ss_dssp             CBTTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999 999999999999999999999999 99999999999999999999987765443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=5.2e-26  Score=169.86  Aligned_cols=125  Identities=25%  Similarity=0.278  Sum_probs=116.1

Q ss_pred             CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887          225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN  304 (394)
Q Consensus       225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  304 (394)
                      ..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999987665 88899999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      |+.+++++|+++|++       ++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~g~~-------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGAD-------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCC-------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999       8999999999999999999999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=1.7e-26  Score=172.81  Aligned_cols=125  Identities=26%  Similarity=0.325  Sum_probs=112.6

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccc
Q 040887          250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK  329 (394)
Q Consensus       250 g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  329 (394)
                      |+|+ .++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.|++       ++.
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~   71 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-------VNT   71 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-------ccC
Confidence            5666 67889999999999999999999999987665 78899999999999999999999999999998       899


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          330 MDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       330 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|...+..+..
T Consensus        72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l  125 (137)
T 3c5r_A           72 TGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLL  125 (137)
T ss_dssp             CCGGGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHH
Confidence            9999999999999999999999999998 99999999999999999988776554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.6e-25  Score=170.26  Aligned_cols=143  Identities=19%  Similarity=0.177  Sum_probs=115.0

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCc-HHHHH
Q 040887          190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLY-PIHLA  267 (394)
Q Consensus       190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~-~l~~a  267 (394)
                      ..+..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+ .++.+++++|++.|++++.++..|.| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            3566789999999999999999999987644 666788999999985 89999999999999999999999999 99999


Q ss_pred             HHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHH
Q 040887          268 CKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA  341 (394)
Q Consensus       268 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A  341 (394)
                      +..|+.+++++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++       ++.++..|.||.+-+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-------TRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------------
T ss_pred             HHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-------CCccCcCcCcccccC
Confidence            9999999999999997665 88999999999999999999999999999999       999999999998744

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=5.1e-25  Score=161.42  Aligned_cols=115  Identities=23%  Similarity=0.284  Sum_probs=104.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCc
Q 040887          257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNT  336 (394)
Q Consensus       257 ~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t  336 (394)
                      +..|.+|||.|+..|+.+++++|++.+.+. +.++..|.||||+|+..++.+++++|++.|++       ++.+|..|+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~d~~g~t   75 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-------INAPDKHHIT   75 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-------TTCCCTTSCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------CCcCCCCCCC
Confidence            456789999999999999999999987665 88899999999999999999999999999999       9999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhh
Q 040887          337 PLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY  380 (394)
Q Consensus       337 ~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~  380 (394)
                      |||+|+..++.+++++|+++| ++++.+|..|.||+++|...+.
T Consensus        76 pL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           76 PLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCCHHH
Confidence            999999999999999999998 9999999999999999965543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=8.4e-25  Score=163.25  Aligned_cols=123  Identities=24%  Similarity=0.314  Sum_probs=113.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC
Q 040887          256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN  335 (394)
Q Consensus       256 ~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~  335 (394)
                      ....+.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..++.+++++|++.|++       ++.+|..|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~d~~g~   81 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-------VNAVDAIGF   81 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCcCCCCCC
Confidence            3456789999999999999999999997665 88899999999999999999999999999999       999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887          336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE  387 (394)
Q Consensus       336 t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~  387 (394)
                      ||||+|+..|+.+++++|+++| ++++.+|..|.|||++|++.|+.+.....
T Consensus        82 t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  132 (136)
T 2jab_A           82 TPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEIL  132 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999999 99999999999999999999987765443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=184.40  Aligned_cols=140  Identities=18%  Similarity=0.117  Sum_probs=122.6

Q ss_pred             CCChHHHHHhcCCHHHHHHHHhcCccccc------cCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCCccccCCCchH
Q 040887          227 GKSPLQVATKKRNLGVCYLLEVNGYSALK------KNKETLYPIHLACKN---GHANVMVELLKEWRCPSLFVTDNGCNI  297 (394)
Q Consensus       227 ~~~~l~~a~~~~~~~~~~~L~~~g~~~~~------~~~~g~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~  297 (394)
                      ..++|+.|+..++.+.++.|+..|.+++.      .+..|.||||+|+..   ++.+++++|++.+.+. +.+|..|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence            44679999999999989889999999887      688999999999997   8999999999997765 8899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHh
Q 040887          298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR  377 (394)
Q Consensus       298 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~  377 (394)
                      ||+|+..|+.+++++|++.|++       ++.+|..|+||||+|+..++.+++++|+++| ++      .|.||||+|++
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad-------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~  295 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRAL-------VGTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYS  295 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC----
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHh
Confidence            9999999999999999999999       9999999999999999999999999999999 65      58999999999


Q ss_pred             hhhc
Q 040887          378 EYYM  381 (394)
Q Consensus       378 ~~~~  381 (394)
                      .|+.
T Consensus       296 ~g~~  299 (301)
T 2b0o_E          296 WVIS  299 (301)
T ss_dssp             ----
T ss_pred             cCCc
Confidence            8864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=6e-24  Score=156.66  Aligned_cols=121  Identities=38%  Similarity=0.510  Sum_probs=112.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHH
Q 040887          259 ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPL  338 (394)
Q Consensus       259 ~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L  338 (394)
                      +|.||||.|+..|+.+++++|++.+... +..+..|.||||+|+..++.+++++|++.|++       ++.+|..|+|||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~~g~t~l   72 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------VNAKDKNGRTPL   72 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTSCCHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-------CcccCCCCCcHH
Confidence            4899999999999999999999987665 77899999999999999999999999999999       899999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          339 HLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       339 ~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      |+|+..++.+++++|+++| ++++.+|..|.||+++|+..++.+......
T Consensus        73 ~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  121 (126)
T 1n0r_A           73 HLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLL  121 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            9999999999999999999 999999999999999999999877654443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=6e-25  Score=164.38  Aligned_cols=128  Identities=24%  Similarity=0.285  Sum_probs=115.2

Q ss_pred             CCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHH
Q 040887          222 ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFA  301 (394)
Q Consensus       222 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  301 (394)
                      ..+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999987665 88899999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       302 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      +..++.+++++|++.|++       ++.+|..|+||||+|+..+..+++++|.+.+
T Consensus        84 ~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGAS-------RNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCC-------TTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHcCCHHHHHHHHHcCCC-------CCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            999999999999999999       9999999999999999999999988887766

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=1.1e-24  Score=177.18  Aligned_cols=137  Identities=19%  Similarity=0.163  Sum_probs=109.8

Q ss_pred             CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887          225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN  304 (394)
Q Consensus       225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  304 (394)
                      ..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++..+..++.+|..|.||||+|+..
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            45678888888888888888888889999999999999999999999999999999985555688999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCC
Q 040887          305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGM  369 (394)
Q Consensus       305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~  369 (394)
                      |+.+++++|++.|++       ++.+|..|+||||+|+..++.++++.|++.| ++...++..|.
T Consensus       151 ~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~~  207 (222)
T 3ehr_A          151 GYADIVQLLLAKGAR-------TDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAEDY  207 (222)
T ss_dssp             TCHHHHHHHHHHTCC-------SCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred             CCHHHHHHHHHcCCC-------CccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhhh
Confidence            999999999999999       8999999999999999999999999999999 88888777654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=9.1e-24  Score=154.71  Aligned_cols=113  Identities=18%  Similarity=0.105  Sum_probs=103.2

Q ss_pred             CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887          225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN  304 (394)
Q Consensus       225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  304 (394)
                      ..+.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+..
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence            56788999999999999999999999999999999999999999999999999999987665 88999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcC
Q 040887          305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG  345 (394)
Q Consensus       305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  345 (394)
                      ++.+++++|+++|++       ++.+|..|+||||+|...+
T Consensus        84 ~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           84 GHVSCVKLLLSKGAD-------KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             TCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHCCCHH
T ss_pred             CCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHhCCHH
Confidence            999999999999999       8999999999999995433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=1.6e-23  Score=164.71  Aligned_cols=107  Identities=20%  Similarity=0.164  Sum_probs=51.2

Q ss_pred             CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc-CCCchHHHHHHHcCC
Q 040887          228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT-DNGCNILHFAAKNGH  306 (394)
Q Consensus       228 ~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~  306 (394)
                      .||||.|+..|+.++++.|++ |.+++.++..|.||||+|+..|+.+++++|++.+.+. +..+ ..|+||||+|+..|+
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~~~  122 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVR  122 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhcCc
Confidence            344444444444444444444 4444444445555555555555555555555444333 3333 445555555555555


Q ss_pred             HHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887          307 ADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL  343 (394)
Q Consensus       307 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  343 (394)
                      .+++++|+++|++       ++.+|..|+||||+|+.
T Consensus       123 ~~~v~~Ll~~ga~-------~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          123 PEVVEALVELGAD-------IEVEDERGLTALELARE  152 (183)
T ss_dssp             HHHHHHHHHHTCC-------TTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHcCCC-------CcCCCCCCCCHHHHHHH
Confidence            5555555555544       44455555555555543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=3.2e-23  Score=163.01  Aligned_cols=117  Identities=26%  Similarity=0.331  Sum_probs=108.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC-CCCC
Q 040887          257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD-EDGN  335 (394)
Q Consensus       257 ~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~g~  335 (394)
                      +..|.||||.|+..|+.++++.|++ +. .++..|..|.||||+|+..|+.+++++|+++|++       ++.++ ..|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~~g~  111 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-------LDHRDMRGGL  111 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCSSSSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCcCCCCCCC
Confidence            4578899999999999999999999 44 5588999999999999999999999999999999       88888 8999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcch
Q 040887          336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT  383 (394)
Q Consensus       336 t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~  383 (394)
                      ||||+|+..|+.+++++|+++| ++++.+|..|.|||++|++.+..+.
T Consensus       112 tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~  158 (183)
T 3deo_A          112 TALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTP  158 (183)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHHHTCC
T ss_pred             CHHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhccCcc
Confidence            9999999999999999999999 9999999999999999998866543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.3e-23  Score=170.94  Aligned_cols=123  Identities=26%  Similarity=0.333  Sum_probs=113.0

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhC-CCCCCcchhhccccCCC
Q 040887          255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI-PGTNMTMDEVVNKMDED  333 (394)
Q Consensus       255 ~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~  333 (394)
                      ..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+..|+.+++++|++. |++       ++.+|..
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-------~~~~d~~  139 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-------LNQQNKL  139 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-------CCCCCTT
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-------ccccCCC
Confidence            34567899999999999999999999987665 88899999999999999999999999999 888       9999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhh
Q 040887          334 GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIA  386 (394)
Q Consensus       334 g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~  386 (394)
                      |+||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+..+..+....
T Consensus       140 g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~  191 (222)
T 3ehr_A          140 GDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKK  191 (222)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHH
Confidence            999999999999999999999999 9999999999999999999887665433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=3.6e-23  Score=170.37  Aligned_cols=139  Identities=16%  Similarity=0.139  Sum_probs=109.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccC-CCCCcHHHHHHHcCC
Q 040887          194 EDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN-KETLYPIHLACKNGH  272 (394)
Q Consensus       194 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~-~~g~~~l~~a~~~~~  272 (394)
                      .|.||||+|+..|+.+++++|++....+..+..|.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+..|+
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~  123 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR  123 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            5778888888888888888888844556677778888888888888888888888888887777 678888888888888


Q ss_pred             HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887          273 ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA  352 (394)
Q Consensus       273 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  352 (394)
                      .+++++|++.+.+. +.+|..|.||||+|+..++                        ...+.||||+|+..|+.+++++
T Consensus       124 ~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------------~~~~~~~l~~a~~~g~~~iv~~  178 (244)
T 3ui2_A          124 PEVVEALVELGADI-EVEDERGLTALELAREILK------------------------TTPKGNPMQFGRRIGLEKVINV  178 (244)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------------ccCCCCHHHHHHHcChHHHHHH
Confidence            88888888876555 7778888888888874221                        2356788888888888888888


Q ss_pred             HHhcC
Q 040887          353 LLRYG  357 (394)
Q Consensus       353 Ll~~g  357 (394)
                      |++.+
T Consensus       179 L~~~~  183 (244)
T 3ui2_A          179 LEGQV  183 (244)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=7.3e-23  Score=168.54  Aligned_cols=166  Identities=18%  Similarity=0.179  Sum_probs=132.6

Q ss_pred             HHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcH
Q 040887           10 FEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKL   89 (394)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~   89 (394)
                      +.++..|+.+.++......       ...+.+|.||||+||+.|+.+++++|++ + .+++.+|..|+||||+|+..|+.
T Consensus        20 l~~~~~g~~~~~~~~~~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~g~~   90 (244)
T 3ui2_A           20 LIEWKDGHSPSWVPSSYIA-------ADVVSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSD   90 (244)
T ss_dssp             EEEESSCCCCEEEEGGGSC-------HHHHHHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHHHTCH
T ss_pred             HHHHHcCCCcccccccccc-------cccccCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHHCCCH
Confidence            3344555655555533222       2245679999999999999999999999 4 47899999999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhh
Q 040887           90 NTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNI  169 (394)
Q Consensus        90 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (394)
                      +++++|+++|++++..+          +..|.||||.|+..+                  +.                  
T Consensus        91 ~~v~~Ll~~ga~~~~~~----------~~~g~t~L~~A~~~g------------------~~------------------  124 (244)
T 3ui2_A           91 KCVRLLAEAGADLDHRD----------MRGGLTALHMAAGYV------------------RP------------------  124 (244)
T ss_dssp             HHHHHHHHTTCCTTCCC----------SSSCCCHHHHHHHTT------------------CH------------------
T ss_pred             HHHHHHHHcCCCCCcCC----------CCCCCCHHHHHHHcC------------------CH------------------
Confidence            99999999999975332          256999999998776                  22                  


Q ss_pred             hhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhc
Q 040887          170 INSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVN  249 (394)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~  249 (394)
                           +++++|++.|.+++ .++..|.||||+|+..++.                ..+.+||++|+..|+.+++++|.+.
T Consensus       125 -----~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~~----------------~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          125 -----EVVEALVELGADIE-VEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             -----HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHTT----------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHhc----------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence                 89999999999988 6888999999999863321                5678999999999999999999987


Q ss_pred             Ccc
Q 040887          250 GYS  252 (394)
Q Consensus       250 g~~  252 (394)
                      +.+
T Consensus       183 ~~~  185 (244)
T 3ui2_A          183 VFE  185 (244)
T ss_dssp             HEE
T ss_pred             ccc
Confidence            654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=2e-22  Score=139.45  Aligned_cols=93  Identities=43%  Similarity=0.594  Sum_probs=83.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHH
Q 040887          259 ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPL  338 (394)
Q Consensus       259 ~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L  338 (394)
                      +|+||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|++.|++       ++.+|..|+|||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~g~t~l   72 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------VNAKDKNGRTPL   72 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCccCCCCCCHH
Confidence            4789999999999999999999987665 88899999999999999999999999999998       899999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCC
Q 040887          339 HLAALHGHSQVVYALLRYGRSN  360 (394)
Q Consensus       339 ~~A~~~~~~~~~~~Ll~~g~ad  360 (394)
                      |+|+..|+.+++++|+++| ++
T Consensus        73 ~~A~~~~~~~~~~~Ll~~g-a~   93 (93)
T 1n0q_A           73 HLAARNGHLEVVKLLLEAG-AY   93 (93)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-CC
T ss_pred             HHHHHcCCHHHHHHHHHcC-CC
Confidence            9999999999999999998 64

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=1.9e-21  Score=162.81  Aligned_cols=159  Identities=21%  Similarity=0.209  Sum_probs=79.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCC-C-CC------------------------------CCChHHHHHhcC
Q 040887          191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGIS-W-SS------------------------------GKSPLQVATKKR  238 (394)
Q Consensus       191 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~-~~------------------------------~~~~l~~a~~~~  238 (394)
                      .|..+.++++.+...|+..+.+++....+.... . ..                              ..++|+.|+..+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            456677788888888888777766543322111 0 00                              112444444444


Q ss_pred             CHHHHHHHHhcCcccc------ccCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHH
Q 040887          239 NLGVCYLLEVNGYSAL------KKNKETLYPIHLACKN---GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM  309 (394)
Q Consensus       239 ~~~~~~~L~~~g~~~~------~~~~~g~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  309 (394)
                      ..+.++.++..|.+++      ..+..|.||||+|+..   |+.+++++|++.+++. +.+|..|+||||+|+..|+.++
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~  220 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAEC  220 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence            4444444444444422      2234445555555544   4445555555443333 4444445555555555555555


Q ss_pred             HHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       310 ~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      +++|+++|++       ++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       221 v~~Ll~~gad-------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          221 LKLLLRGKAS-------IEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCC-------CCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            5555555544       4444555555555555555555555555544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=3e-22  Score=173.19  Aligned_cols=149  Identities=16%  Similarity=0.074  Sum_probs=118.5

Q ss_pred             CCCCChHHHHHhc-CCHHHHHHHHhcCccccccC--CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHH
Q 040887          225 SSGKSPLQVATKK-RNLGVCYLLEVNGYSALKKN--KETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFA  301 (394)
Q Consensus       225 ~~~~~~l~~a~~~-~~~~~~~~L~~~g~~~~~~~--~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  301 (394)
                      ..+.++||.|+.. ++.++++.|+..|++++..+  ..|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            4556899999999 99999999999999999988  89999999999999999999999997665 88999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC--CCCCCcccCCCcHHHHHHhhh
Q 040887          302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR--SNPDLKNKQGMTAYKMALREY  379 (394)
Q Consensus       302 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--ad~~~~~~~g~t~l~~a~~~~  379 (394)
                      +..|+.+++++|+++|++       ++.+|..|.||||+|+..++.+++++|++.+.  ++....+..+.|+++++....
T Consensus       276 ~~~g~~~~v~~LL~~Gad-------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          276 TILGHTGLACLFLKRGAD-------LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHcCcHHHHHHHHHCcCC-------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999999999       99999999999999999999999999998762  233456778889999887654


Q ss_pred             hc
Q 040887          380 YM  381 (394)
Q Consensus       380 ~~  381 (394)
                      ..
T Consensus       349 ~~  350 (368)
T 3jue_A          349 LM  350 (368)
T ss_dssp             --
T ss_pred             hh
Confidence            43

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=1.3e-22  Score=171.74  Aligned_cols=139  Identities=18%  Similarity=0.068  Sum_probs=119.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCC-------CCCCCCChHHHHHhc---CCHHHHHHHHhcCccccccCCCCCcHH
Q 040887          195 DKSPLSLAIEMGNTDVLEYILRSLPSGI-------SWSSGKSPLQVATKK---RNLGVCYLLEVNGYSALKKNKETLYPI  264 (394)
Q Consensus       195 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~-------~~~~~~~~l~~a~~~---~~~~~~~~L~~~g~~~~~~~~~g~~~l  264 (394)
                      ..++|+.|+..++.+.++.|++.+....       .+..|.||||+|+..   ++.+++++|++.|++++.++..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            4578999999999999999998765533       477899999999997   888999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHc
Q 040887          265 HLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH  344 (394)
Q Consensus       265 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  344 (394)
                      |+|+..|+.+++++|++.+++. +.+|..|.||||+|+..++.+++++|++.|++             .|.||||+|+.+
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------------~g~tpLh~A~~~  296 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------------TFAFPLHVDYSW  296 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------------TTSSCCC-----
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------------CCCChhHHHHhc
Confidence            9999999999999999987766 88999999999999999999999999998854             578999999998


Q ss_pred             CCH
Q 040887          345 GHS  347 (394)
Q Consensus       345 ~~~  347 (394)
                      |+.
T Consensus       297 g~~  299 (301)
T 2b0o_E          297 VIS  299 (301)
T ss_dssp             ---
T ss_pred             CCc
Confidence            864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=1.2e-22  Score=146.82  Aligned_cols=109  Identities=35%  Similarity=0.443  Sum_probs=99.1

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCC
Q 040887          255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG  334 (394)
Q Consensus       255 ~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g  334 (394)
                      .++..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..++.+++++|++.|++       ++.+|..|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~d~~g   75 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-------VNARSKDG   75 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-------TTCCCTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-------CcccCCCC
Confidence            46788999999999999999999999987665 78899999999999999999999999999998       89999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHH
Q 040887          335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAY  372 (394)
Q Consensus       335 ~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l  372 (394)
                      +||||+|+..++.+++++|+++| ++++.++..|.+|-
T Consensus        76 ~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           76 NTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence            99999999999999999999999 99999999999874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=8.2e-21  Score=158.93  Aligned_cols=159  Identities=19%  Similarity=0.159  Sum_probs=130.4

Q ss_pred             CCCCCCChHHHHHhcCCHHHHHHHHhcCccc-----ccc--------------------------CCCCCcHHHHHHHcC
Q 040887          223 SWSSGKSPLQVATKKRNLGVCYLLEVNGYSA-----LKK--------------------------NKETLYPIHLACKNG  271 (394)
Q Consensus       223 ~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~-----~~~--------------------------~~~g~~~l~~a~~~~  271 (394)
                      .+..+.++++.+...|+..+..++...-.+.     ...                          .....++|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            4456778999998888887766664321110     000                          001125799999999


Q ss_pred             CHHHHHHHHHhcCCC-----CccccCCCchHHHHHHHc---CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887          272 HANVMVELLKEWRCP-----SLFVTDNGCNILHFAAKN---GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL  343 (394)
Q Consensus       272 ~~~~v~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  343 (394)
                      +.+.+..++..+.+.     ++..+..|.||||+|+..   ++.+++++|+++|++       +|.+|..|+||||+|+.
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-------in~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-------LDKQTGKGSTALHYCCL  214 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-------TTCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-------ccccCCCCCCHHHHHHH
Confidence            999999999988775     244578899999999999   899999999999999       99999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHHH
Q 040887          344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQ  389 (394)
Q Consensus       344 ~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~~  389 (394)
                      .|+.+++++|+++| +|++.+|..|.||||+|+..|+.+......+
T Consensus       215 ~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          215 TDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             TTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999 9999999999999999999998777544433

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=6.5e-21  Score=164.79  Aligned_cols=124  Identities=16%  Similarity=0.194  Sum_probs=112.5

Q ss_pred             cCCCCCcHHHHHHHc-CCHHHHHHHHHhcCCCCcccc--CCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC
Q 040887          256 KNKETLYPIHLACKN-GHANVMVELLKEWRCPSLFVT--DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE  332 (394)
Q Consensus       256 ~~~~g~~~l~~a~~~-~~~~~v~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  332 (394)
                      ....+.++||.|+.. ++.++++.|++.+.+. +..+  ..|.||||+|+..|+.+++++|+++|++       ++.+|.
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-------vn~~d~  266 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-------VNQADS  266 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCT
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-------CCCCCC
Confidence            334566899999999 9999999999987766 6677  7899999999999999999999999999       999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      .|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.+......
T Consensus       267 ~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl  321 (368)
T 3jue_A          267 AGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLR  321 (368)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999999999 999999999999999999999877754443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=1.4e-20  Score=130.13  Aligned_cols=93  Identities=35%  Similarity=0.495  Sum_probs=85.6

Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887          226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG  305 (394)
Q Consensus       226 ~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  305 (394)
                      +|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence            3789999999999999999999999999999999999999999999999999999987766 888999999999999999


Q ss_pred             CHHHHHHHHhCCCC
Q 040887          306 HADMVKAIIEIPGT  319 (394)
Q Consensus       306 ~~~~~~~Ll~~~~~  319 (394)
                      +.+++++|++.|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=2.5e-20  Score=134.57  Aligned_cols=108  Identities=28%  Similarity=0.308  Sum_probs=97.1

Q ss_pred             CCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHH
Q 040887          223 SWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAA  302 (394)
Q Consensus       223 ~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  302 (394)
                      .+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|++.+.+. +..+..|.||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence            4577888999999999999999999999999999999999999999999999999999987665 888999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHH
Q 040887          303 KNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPL  338 (394)
Q Consensus       303 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L  338 (394)
                      ..++.+++++|+++|++       ++.++..|.||-
T Consensus        84 ~~~~~~~~~~Ll~~ga~-------~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGAD-------VNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSS-------HHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCC-------CCcCCccccccc
Confidence            99999999999999999       999999998873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=3.6e-19  Score=127.06  Aligned_cols=89  Identities=30%  Similarity=0.413  Sum_probs=73.1

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccC
Q 040887          288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQ  367 (394)
Q Consensus       288 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~  367 (394)
                      ...+.+|.||||+|+..|+.+++++|++.|++       ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~   89 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD-------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKF   89 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTT
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccC
Confidence            45677888888888888888888888888887       8888888888888888888888888888888 888888888


Q ss_pred             CCcHHHHHHhhhhcchh
Q 040887          368 GMTAYKMALREYYMQTS  384 (394)
Q Consensus       368 g~t~l~~a~~~~~~~~~  384 (394)
                      |.|||++|+..|..+..
T Consensus        90 g~tpl~~A~~~~~~~~~  106 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLA  106 (110)
T ss_dssp             SCCHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHcCCHHHH
Confidence            88888888888876554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=1.1e-18  Score=124.50  Aligned_cols=92  Identities=23%  Similarity=0.293  Sum_probs=82.2

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCC
Q 040887          254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDED  333 (394)
Q Consensus       254 ~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  333 (394)
                      ...+.+|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|+++|++       ++.+|..
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~   89 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-------VXAQDKF   89 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTT
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------ccccccC
Confidence            446678899999999999999999999986655 88899999999999999999999999999998       8999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHH
Q 040887          334 GNTPLHLAALHGHSQVVYAL  353 (394)
Q Consensus       334 g~t~L~~A~~~~~~~~~~~L  353 (394)
                      |+||||+|+..|+.+++++|
T Consensus        90 g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             SCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	394
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 6e-26
 Identities = 86/364 (23%), Positives = 140/364 (38%), Gaps = 50/364 (13%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
              + LH+AA++GH E+   + Q     +N       TPLHCAAR G  N    L++   
Sbjct: 32  KVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160
           +    + A    L +    G+     AL          T    + L +A           
Sbjct: 91  NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA----------- 139

Query: 161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS 220
                        V +A  L+  D   +        +PL +A+   N D+++ +L    S
Sbjct: 140 --------AKYGKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 190

Query: 221 -GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVEL 279
                 +G +PL +A K+  + V   L   G SA  ++ + + P+HLA + GHA  MV L
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE-MVAL 249

Query: 280 LKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE------------------------ 315
           L   +        +G   LH  A+ GH  +   +I+                        
Sbjct: 250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 309

Query: 316 --IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYK 373
             +    +     VN   + G +PLH AA  GH+ +V  LL+ G ++P+  +  G T   
Sbjct: 310 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLA 368

Query: 374 MALR 377
           +A R
Sbjct: 369 IAKR 372

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 3e-25
 Identities = 84/327 (25%), Positives = 128/327 (39%), Gaps = 31/327 (9%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPST 105
           LHVA+  GH  I   + Q      N +N + +TPLH AARAG    A  L+         
Sbjct: 4   LHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-------- 54

Query: 106 SQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI 165
           ++A V+    +     T LH A  + G  N+ +  +  ++     +     P        
Sbjct: 55  NKAKVN---AKAKDDQTPLHCAARI-GHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 110

Query: 166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL-RSLPSGISW 224
               + +L+               C   +  +PL +A + G   V E +L R      + 
Sbjct: 111 HVETVLALLEKEASQ--------ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 162

Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
            +G +PL VA    NL +  LL   G S          P+H+A K     V   LL+   
Sbjct: 163 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

Query: 285 CPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344
             +   +  G   LH AA+ GHA+MV          ++     N  ++ G TPLHL A  
Sbjct: 223 SANAE-SVQGVTPLHLAAQEGHAEMVA-------LLLSKQANGNLGNKSGLTPLHLVAQE 274

Query: 345 GHSQVVYALLRYGRSNPDLKNKQGMTA 371
           GH  V   L+++G    D   + G T 
Sbjct: 275 GHVPVADVLIKHG-VMVDATTRMGYTP 300

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 4e-19
 Identities = 63/306 (20%), Positives = 121/306 (39%), Gaps = 31/306 (10%)

Query: 69  INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEAL 128
                 +G TPLH AA+ GK+  A  L++   H  +  +  +  L +     N  + + L
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 129 FMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS 188
              G  +    +  G   T  H     N        ++                      
Sbjct: 185 LPRG-GSPHSPAWNG--YTPLHIAAKQNQVEVARSLLQYGGSA----------------- 224

Query: 189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSG-ISWSSGKSPLQVATKKRNLGVCYLLE 247
             ++++  +PL LA + G+ +++  +L    +G +   SG +PL +  ++ ++ V  +L 
Sbjct: 225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 248 VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA 307
            +G       +    P+H+A   G+   +V+ L + +      T  G + LH AA+ GH 
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIK-LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD--LKN 365
           D+V  +++  G +       N++  DG TPL +A   G+  V   L           + +
Sbjct: 344 DIVTLLLKN-GAS------PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

Query: 366 KQGMTA 371
           K  M+ 
Sbjct: 397 KHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 8e-16
 Identities = 66/307 (21%), Positives = 109/307 (35%), Gaps = 30/307 (9%)

Query: 78  TPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVW 137
           TPLH A+  G L     L+           A  +   + N    T LH A    G   V 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ--------RGASPN---VSNVKVETPLHMAARA-GHTEVA 49

Query: 138 RTSI-AGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK 196
           +  +   + +        +    A               +   L+  +   +        
Sbjct: 50  KYLLQNKAKVNAKAKDDQTPLHCA--------ARIGHTNMVKLLLENNANPNLATTAGHT 101

Query: 197 SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKK 256
                A E     VL  + +          G +PL VA K   + V  LL          
Sbjct: 102 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 161

Query: 257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI 316
            K  L P+H+A  + + ++ V+LL            NG   LH AAK    ++ +++++ 
Sbjct: 162 GKNGLTPLHVAVHHNNLDI-VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 220

Query: 317 PGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
            G+              G TPLHLAA  GH+++V   L   ++N +L NK G+T   +  
Sbjct: 221 GGSANAE-------SVQGVTPLHLAAQEGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVA 272

Query: 377 REYYMQT 383
           +E ++  
Sbjct: 273 QEGHVPV 279

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 3e-11
 Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 30/259 (11%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
           +G + LHVA    + +I  K+        +     G TPLH AA+  ++  A +L+ +  
Sbjct: 164 NGLTPLHVAVHHNNLDI-VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160
                          E+  G T LH A    G   +    ++  +     +     P   
Sbjct: 223 SAN-----------AESVQGVTPLHLAAQE-GHAEMVALLLSKQANGNLGNKSGLTPLHL 270

Query: 161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS 220
           +       + +        L+     +         +PL +A   GN  +++++L+    
Sbjct: 271 VAQEGHVPVAD-------VLIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQAD 322

Query: 221 G-ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVEL 279
                  G SPL  A ++ +  +  LL  NG S  + + +   P+ +A + G+ +V  ++
Sbjct: 323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV-TDV 381

Query: 280 LKEWRCPSLFVTDNGCNIL 298
           LK        VTD    +L
Sbjct: 382 LKV-------VTDETSFVL 393

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 2e-21
 Identities = 43/325 (13%), Positives = 94/325 (28%), Gaps = 45/325 (13%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
           + + LL  A ++   ++  ++ +    +  +    G TPLH A +  + +    L+    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160
                 +       +    G+  L +     G           ++   A  Y        
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS 220
           +        +               +          + L  A E G+ +VL+ +L  + +
Sbjct: 124 LYKRGANVNLRRK----------TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 221 GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL 280
            ++                                  +  L    L+  +     +  LL
Sbjct: 174 DVNACD----------------------------NMGRNALIHALLSSDDSDVEAITHLL 205

Query: 281 KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHL 340
            +         + G   L  A +  H  +V+ ++E           +N  D DG T L L
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE------INDTDSDGKTALLL 259

Query: 341 AALHGHSQVVYALLRYGRSNPDLKN 365
           A      ++   L + G ++ D  +
Sbjct: 260 AVELKLKKIAELLCKRG-ASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 2e-15
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 6/187 (3%)

Query: 193 IEDKSPLSLAIEMGNTDVLEYILRS--LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNG 250
           +ED   L  A++  + D+++ +L      +      G +PL  A +     +  LL  +G
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 251 YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMV 310
              + + K    P  LA   G   ++                 G      AA  G    +
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLF-LSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 311 KAIIEIPGTNMTMD---EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQ 367
           K + +            E   ++ + G T L  AA  GH +V+  LL    ++ +  +  
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 368 GMTAYKM 374
           G  A   
Sbjct: 182 GRNALIH 188

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 2e-14
 Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 41/251 (16%)

Query: 169 IINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWS-SG 227
           + N  V +   L+     ++  +     +PL  A++M   D++E +LR     +    +G
Sbjct: 13  VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72

Query: 228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK------ 281
            +P  +A    ++ +  L    G    + +         A   G    +  L K      
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132

Query: 282 ---EWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN------------------ 320
              + +     +   G   L  AA+ GH +++K +++  G +                  
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192

Query: 321 ---MTMDEV----------VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQ 367
                ++ +          VN   E G TPL LA    H  +V  LL       +  +  
Sbjct: 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 252

Query: 368 GMTAYKMALRE 378
           G TA  +A+  
Sbjct: 253 GKTALLLAVEL 263

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 5e-07
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 296 NILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
           ++L  A +N   D+V+ ++E  G N     V  + +E G TPLH A       +V  LLR
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEG-GAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 356 YGRSNPDLKNKQGMTAYKMALREYYMQ 382
           +G      K          A+      
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKL 87

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.2 bits (207), Expect = 1e-18
 Identities = 38/320 (11%), Positives = 75/320 (23%), Gaps = 69/320 (21%)

Query: 40  TDGSSLLHVAAKSGHGEI--TAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
                +  VAA +G      T  +      ++     +       AA  G L+    L  
Sbjct: 88  IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC- 146

Query: 98  FAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNP 157
                     AP +++ M  A    A   A        +                     
Sbjct: 147 --------ELAPTEIMAMIQAENYHAFRLAAENGHLHVLN--------------RLCEL- 183

Query: 158 TLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRS 217
                                   +     +  +     +    A+  G+ +V+ ++L  
Sbjct: 184 ------------------------APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 219

Query: 218 LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMV 277
                             +     V   +  +      + KE      L+  +G  +++ 
Sbjct: 220 ------PVMLAYAEIHEFEYGEKYVNPFIARHV----NRLKEMHDAFKLSNPDGVFDLVT 269

Query: 278 ELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTP 337
           +                   L         D ++ ++ IPG           +  D N  
Sbjct: 270 KSECLQ-------GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP--TATIPGDANEL 320

Query: 338 LHLAALHGHSQVVYALLRYG 357
           L LA   G+      LL   
Sbjct: 321 LRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.5 bits (161), Expect = 1e-12
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 15/153 (9%)

Query: 242 VCYLLEVNGYSALKKNKETLYPIHLACKNGHANV----------MVELLKEWRCPSLFVT 291
             + +  N  S +  + +    I L        V               K+    +    
Sbjct: 28  FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKG 87

Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
                I   AA  G +  +  +  +    +T DE+V  +  +      LAA +GH  V+ 
Sbjct: 88  IKSEVICFVAAITGCSSALDTLCLL----LTSDEIVKVIQAENYQAFRLAAENGHLHVLN 143

Query: 352 ALLRYGRS-NPDLKNKQGMTAYKMALREYYMQT 383
            L     +    +   +   A+++A    ++  
Sbjct: 144 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 176

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.1 bits (147), Expect = 6e-11
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 255 KKNKETLYPIHLACKNGHANV--MVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKA 312
           KK  ++     +A   G ++    + LL         +          AA+NGH  ++  
Sbjct: 85  KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR 144

Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAY 372
           + E+        E++  +  +      LAA +GH  V+  L     +      +      
Sbjct: 145 LCELAP-----TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA 199

Query: 373 KMALREYYMQTSIAE 387
                      ++  
Sbjct: 200 FRWAAVGRGHHNVIN 214

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.2 bits (196), Expect = 1e-17
 Identities = 46/312 (14%), Positives = 90/312 (28%), Gaps = 42/312 (13%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLIN-KTNNQGDTPLHCAARAGKLNTATALVDFAKHIPS 104
           LH  A +G   IT  I +     +N        T LH  A       +  L+        
Sbjct: 6   LHTEA-AGSYAITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 105 TSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT 164
            + A V+     +   NT L  A+    R  V     AG+  T+ +    S         
Sbjct: 62  AAGADVN---AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL------- 111

Query: 165 IKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW 224
                                + +  ++      +  + ++                I  
Sbjct: 112 --------------------HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 151

Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
            +       + K        +          +  +    +H A +  +  ++  L+ E  
Sbjct: 152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 211

Query: 285 CPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344
                  ++G   +  AA+ G  ++V  +I+  G +      V  +D   +T   LA  +
Sbjct: 212 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GAS------VEAVDATDHTARQLAQAN 264

Query: 345 GHSQVVYALLRY 356
            H  +V    R 
Sbjct: 265 NHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 16/253 (6%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFL-------INKTNNQGDTPLHCAARAGKLNTAT 93
              ++LH  A +   E +  +  +           +N  +   +TPL  A  A +     
Sbjct: 32  HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 91

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYF 153
            L+         +++    L    A  +  +   +    ++      +  + +T      
Sbjct: 92  YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 151

Query: 154 LSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEY 213
            +          +      LV     +          +  + ++ L  A ++ N  +++Y
Sbjct: 152 HNE------GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 205

Query: 214 ILRSLPSGISW--SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG 271
           ++    S        GK+P+ +A ++  + V   L   G S    +        LA  N 
Sbjct: 206 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN 265

Query: 272 HANVMVELLKEWR 284
           H N+ V++    R
Sbjct: 266 HHNI-VDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 283 WRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA 342
                      G   LH+AA+  +  +VK ++   G+N          DEDG TP+ LAA
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK------QDEDGKTPIMLAA 229

Query: 343 LHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
             G  +VV  L++ G ++ +  +    TA ++A   
Sbjct: 230 QEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 18/93 (19%)

Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD-EDGNTPLHLAALHGHSQVVYALLRY 356
           LH  A  G   + + I           E VN +D     T LH  A +  ++    L+ +
Sbjct: 6   LHTEAA-GSYAITEPITR---------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH 55

Query: 357 GRS-------NPDLKNKQGMTAYKMALREYYMQ 382
                     + +  +    T   +A+     +
Sbjct: 56  EAKECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
           PI L  +   +  + E +      ++    +   +LH+ A N  A+  + +I        
Sbjct: 3   PIKLHTEAAGSYAITEPITR-ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 323 MDEV-VNKMDEDGNTPLH 339
                VN MD D NTPL 
Sbjct: 62  AAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 15/203 (7%)

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSG---------ISWSSGKSPLQVATKKRNLG 241
               +++ L       + +  E ++                      +PL +A   R   
Sbjct: 29  DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 88

Query: 242 VCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK--EWRCPSLFVTDNGCNILH 299
           +   L   G      NK     +H A  N    +MV +L   + +     +  NG   L 
Sbjct: 89  LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 148

Query: 300 FAAKNGHADMVK----AIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
             A N   D V      + +    +       +     G T LH AA   +  +V  L+ 
Sbjct: 149 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 208

Query: 356 YGRSNPDLKNKQGMTAYKMALRE 378
              SN D +++ G T   +A +E
Sbjct: 209 EKGSNKDKQDEDGKTPIMLAAQE 231

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.5 bits (184), Expect = 6e-16
 Identities = 30/229 (13%), Positives = 75/229 (32%), Gaps = 14/229 (6%)

Query: 160 AIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR--- 216
           +       +  + L  +     +    L+   +    +PL     + N ++++++++   
Sbjct: 72  SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 131

Query: 217 --SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHAN 274
                  +  S     ++      +     LL+      + ++      +H         
Sbjct: 132 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 191

Query: 275 VMVELLKEW-RCPSLFVTDNGCNILHFAAKNGHADMVKA-------IIEIPGTNMTMDEV 326
                 K +      ++       +        +            I+E       +  +
Sbjct: 192 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 251

Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
           +N  D +G+T L++AA  G+  +V ALL YG ++P + NK G+      
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.8 bits (138), Expect = 6e-10
 Identities = 34/303 (11%), Positives = 87/303 (28%), Gaps = 45/303 (14%)

Query: 43  SSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHI 102
            + L         E+   +        ++  +      H +         + L +     
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFD-------SLLQEVNDAF 92

Query: 103 PSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSI-AGSSLTMAHSYFLSNPTLAI 161
           P      ++L    +  GNT LH    +   + + +  +  GS+     +   S    A+
Sbjct: 93  P---NTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYGDNMGESCLVKAV 148

Query: 162 DDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSG 221
                 +       + Y    L       ++  +++ L   I            +     
Sbjct: 149 KSVNNYDSGTFEALLDYLYPCLI-----LEDSMNRTILHHIIITSGMTGCSAAAK----- 198

Query: 222 ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
                            ++ + ++++           E     +        +++  L  
Sbjct: 199 --------------YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 244

Query: 282 EWRCPSL--FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLH 339
           +W   ++      NG   L+ AA+ G+  +V A+++  G +          ++ G  P+ 
Sbjct: 245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GAD------PFIANKSGLRPVD 297

Query: 340 LAA 342
             A
Sbjct: 298 FGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 36  EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF--LINKTNNQGDTPLHCAARAGKLNTAT 93
           +    +  S  +         I   +   +    ++N  ++ GDT L+ AAR G ++   
Sbjct: 217 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 276

Query: 94  ALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           AL+D+         A   +    N  G   +   
Sbjct: 277 ALLDY--------GADPFI---ANKSGLRPVDFG 299

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 6e-15
 Identities = 49/295 (16%), Positives = 85/295 (28%), Gaps = 42/295 (14%)

Query: 68  LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
           +       GDT LH A           L+ F         A  + L ++N +G TALH A
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGF--------SAGHEYLDLQNDLGQTALHLA 52

Query: 128 LFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKL 187
             +     V +   AG+ + +A     +   LA                           
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAERGGHTALHLAC-------------------------- 86

Query: 188 SCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLE 247
              +       L         D  +  L         +S       +            E
Sbjct: 87  -RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145

Query: 248 VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA 307
                   +N +   P+H+A  +  A ++  L       +      G   LH A +   A
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205

Query: 308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD 362
            +++ +++  G +             G TPL  A L  +  +   L  +G   P+
Sbjct: 206 SVLELLLKA-GAD------PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 2e-11
 Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 7/251 (2%)

Query: 34  IFEKVLTDGSSLLHVAAKSGHGEITAKIAQY--YPFLINKTNNQGDTPLHCAARAGKLNT 91
           +F  V  DG + LH+A    H      +  +      ++  N+ G T LH AA  G+ +T
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 92  ATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHS 151
              L      +    +     L +   +        L      +  R +           
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR-PSHPRDASDTYLTQSQDC 119

Query: 152 YFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVL 211
              ++   A  D+              + + L+ +          + +    EM      
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL--- 176

Query: 212 EYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG 271
                +  +    + G++PL +A + +   V  LL   G     +      P+  A    
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236

Query: 272 HANVMVELLKE 282
           +  +   LL+ 
Sbjct: 237 NPIL-ARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 1e-08
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRYG--RSNPDLKNKQGMTAYKMA 375
           V   + EDG+T LHLA +H H   +  LL +       DL+N  G TA  +A
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 9e-08
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 10/165 (6%)

Query: 227 GKSPLQVATKKRNLGVC-YLLE--VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEW 283
           G + L +A   ++     +LL           +N      +HLA   G A+ + + L   
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK-LYAA 67

Query: 284 RCPSLFVTDNGCNILHFAAKNGHADMVKAIIE------IPGTNMTMDEVVNKMDEDGNTP 337
               L     G   LH A +         +++         ++  + +  +   +  + P
Sbjct: 68  GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127

Query: 338 LHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
             + +               R   + +N  G T   +A+     +
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 1e-13
 Identities = 48/275 (17%), Positives = 84/275 (30%), Gaps = 51/275 (18%)

Query: 76  GDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVN 135
           GDTPLH A   G L     LV+  +         +D   + N +  T LH A+       
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQ----GGRELD---IYNNLRQTPLHLAVITTLPSV 55

Query: 136 VWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED 195
           V     AG+S      +  +   LA +         S   +   L S  P     +    
Sbjct: 56  VRLLVTAGASPMALDRHGQTAAHLACEH-------RSPTCLRALLDSAAPGTLDLEARNY 108

Query: 196 KSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
               +L + +                                       LLE        
Sbjct: 109 DGLTALHVAVNTECQETV-----------------------------QLLLERGADIDAV 139

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
             K    P+  A +N   +++ +LL +          +G + LH A+  G   +V+ ++ 
Sbjct: 140 DIKSGRSPLIHAVENNSLSMV-QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 198

Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
             G +       +  +   +TPL +A       ++
Sbjct: 199 S-GAD------SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 1e-10
 Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 19/240 (7%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQYYPFL---INKTNNQGDTPLHCAARAGKLNTATALVD 97
           DG + LH+A   G+     ++   +      ++  NN   TPLH A      +    LV 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 98  FAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNP 157
                 +  +       +     +     AL                    A    ++  
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 158 TLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRS 217
                                 L+     +        +SPL  A+E  +  +++ +L+ 
Sbjct: 122 CQETVQ---------------LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 166

Query: 218 -LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVM 276
                    SG S L  A+ +  L +   L  +G  +  KN     P+ +A      +++
Sbjct: 167 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 6e-09
 Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 37/221 (16%)

Query: 194 ED-KSPLSLAIEMGNTDVLEYILRSLPSG-----ISWSSGKSPLQVATKKRNLGVCYLLE 247
           ED  +PL +A+  GN   +  ++     G     I  +  ++PL +A       V  LL 
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 248 VNGYSALKKNKETLYPIHLACKNGHAN---VMVELLKEWRCPSLFVTDNGCNILHFAAKN 304
             G S +  ++      HLAC++        +++              +G   LH A   
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 305 GHADMVKAIIEIPGTNMTMDEV---------------------------VNKMDEDGNTP 337
              + V+ ++E       +D                             VN     G++ 
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 180

Query: 338 LHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
           LH A+  G   +V  L+R G ++  LKN    T   +A   
Sbjct: 181 LHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 332 EDGNTPLHLAALHGHSQVVYALLRYGRS---NPDLKNKQGMTAYKMALREYYMQ 382
           EDG+TPLH+A + G+   V+ L+   +      D+ N    T   +A+      
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 54

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.1 bits (162), Expect = 4e-13
 Identities = 36/272 (13%), Positives = 85/272 (31%), Gaps = 33/272 (12%)

Query: 71  KTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFM 130
           K           A  +G       L++          A ++     N  G TALH+A  +
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLE--------RGADIN---YANVDGLTALHQA-CI 82

Query: 131 LGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCC 190
              V++ +  +   +           P  A       +I   L++    + +++ +    
Sbjct: 83  DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142

Query: 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNG 250
            +I ++  +   ++         I  +                            L    
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI-------------MLRDARQWLNSGH 189

Query: 251 YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMV 310
            + ++  K     +H+A   G+  V+  L++     ++    +G   LH AA  G  +  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEAC 248

Query: 311 KAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA 342
           + ++E    +      +  +++ G T   +A 
Sbjct: 249 RILVE-NLCD------MEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (145), Expect = 6e-11
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
           +    +       +        + L       +    +G   LH AA  G+ +++K +  
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL-- 218

Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
                +     VN  D DG TPLH AA  G  +    L+     + +  NK G TA+ +A
Sbjct: 219 -----IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVA 272

Query: 376 LRE 378
             +
Sbjct: 273 DED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.4 bits (137), Expect = 6e-10
 Identities = 48/266 (18%), Positives = 83/266 (31%), Gaps = 14/266 (5%)

Query: 25  DIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA 84
           D+    +     KV  D  ++   A  SG  E   ++ +     IN  N  G T LH A 
Sbjct: 23  DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQAC 81

Query: 85  RAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTS---- 140
               ++    LV+   +I          L    + G   + E L   G       S    
Sbjct: 82  IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141

Query: 141 ---IAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKS 197
              IA             N      +  +      ++  A   ++              +
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201

Query: 198 PLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKK 256
            L +A   G T+VL+ ++++     I    G +PL  A        C +L  N       
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261

Query: 257 NKETLYPIHLACKNGHANVMVELLKE 282
           NK       +A ++     ++  L+E
Sbjct: 262 NKVGQTAFDVADED-----ILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
           V  +   +   A  +G  + V  ++E  G +      +N  + DG T LH A +  +  +
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLER-GAD------INYANVDGLTALHQACIDDNVDM 88

Query: 350 VYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
           V  L+  G +     N+  +  +  A   Y   
Sbjct: 89  VKFLVENGANINQPDNEGWIPLHAAASCGYLDI 121

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 329 KMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
           K+  D       A   G ++ V  LL  G ++ +  N  G+TA   A
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQA 80

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 2e-11
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 9/130 (6%)

Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
            +G +PL  A  K    +  +L   G +   K+      +H A   G+  ++  LL    
Sbjct: 101 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 160

Query: 285 CPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344
             ++     G   LH A      +  K ++   G +      +   +++  TPL +A   
Sbjct: 161 STNI-QDTEGNTPLHLACDEERVEEAKLLVSQ-GAS------IYIENKEEKTPLQVAK-G 211

Query: 345 GHSQVVYALL 354
           G   ++  ++
Sbjct: 212 GLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 4e-10
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 242 VCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFA 301
           +   +  +   A + ++++   +H AC  GH  ++  LL+     +         +    
Sbjct: 19  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA- 77

Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
                        EI    +     VN ++++G TPLH AA     ++   LL  G +NP
Sbjct: 78  -------ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANP 129

Query: 362 DLKNKQGMTA 371
           D K+    TA
Sbjct: 130 DAKDHYEATA 139

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 4e-10
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 10/197 (5%)

Query: 180 LVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGIS-WSSGKSPLQVATKKR 238
            +  D  L+   + + ++ L  A   G+T+++E++L+          +G SPL +A    
Sbjct: 22  SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 81

Query: 239 NLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNIL 298
              +   L   G      N+    P+H A       + V LL+    P           +
Sbjct: 82  RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEATAM 140

Query: 299 HFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR 358
           H AA  G+  M+  +       +      N  D +GNTPLHLA      +    L+  G 
Sbjct: 141 HRAAAKGNLKMIHIL-------LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG- 192

Query: 359 SNPDLKNKQGMTAYKMA 375
           ++  ++NK+  T  ++A
Sbjct: 193 ASIYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 6e-09
 Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 22/238 (9%)

Query: 45  LLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPS 104
           ++   A SG  E   +       L  +T+    T LH A  AG       L+     +  
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 105 TSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT 164
              A    L +  + G   + +AL   G   V   +  G +     +             
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAAS------------ 112

Query: 165 IKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GIS 223
                  +   IA  L+         K+  + + +  A   GN  ++  +L    S  I 
Sbjct: 113 ------KNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 165

Query: 224 WSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
            + G +PL +A  +  +    LL   G S   +NKE   P+ +A K G   ++  +++
Sbjct: 166 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-07
 Identities = 40/240 (16%), Positives = 71/240 (29%), Gaps = 22/240 (9%)

Query: 77  DTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNV 136
           +  +   A +GKL      +           A   L    +    TALH A    G   +
Sbjct: 4   NLMVCNLAYSGKLEELKESI----------LADKSLATRTDQDSRTALHWACSA-GHTEI 52

Query: 137 WRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK 196
               +              +P        +  I+ +L+     +           N    
Sbjct: 53  VEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV--------NAVNQNGC 104

Query: 197 SPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
           +PL  A      ++   +L    +         + +  A  K NL + ++L     S   
Sbjct: 105 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 164

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
           ++ E   P+HLAC         +LL                 L   AK G   ++K ++E
Sbjct: 165 QDTEGNTPLHLACDEERVEE-AKLLVSQGASIYIENKEEKTPLQ-VAKGGLGLILKRMVE 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 3e-09
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 6/85 (7%)

Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
           LH A        V+ ++    +       + + D+DG  PLH +      ++   LL   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSL------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

Query: 358 RSNPDLKNKQGMTAYKMALREYYMQ 382
            +                +      
Sbjct: 58  ENVNLDDYPDDSGWTPFHIACSVGN 82

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 8e-08
 Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 22/240 (9%)

Query: 46  LHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPST 105
           LH A          ++    P L+ + +  G  PLH +         + L+   +++   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 106 SQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI 165
                      +   +    E +                 L         N       T 
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKS---------------LYDRPLKPDLNKITNQGVTC 108

Query: 166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISW- 224
               +          +  +      K+  ++ PL  A  +G+  ++E +     S ++W 
Sbjct: 109 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 168

Query: 225 -SSGKSPLQVATKKRNLGVC-YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKE 282
              G +PL  A  + +      L+E  G      + +      +A        + +    
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ----VKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 5/188 (2%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISW--SSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
           PL  A        ++ +L S PS +      G+ PL  +   +   +   L     +   
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
            +                  +             +  +   I +      H  + K   E
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLE---VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
           +    +     V   D+    PLH AA  G  +++  L   G+S  + ++KQG T    A
Sbjct: 120 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 376 LREYYMQT 383
           L E +   
Sbjct: 180 LAEGHGDA 187

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 37/240 (15%), Positives = 68/240 (28%), Gaps = 17/240 (7%)

Query: 77  DTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNV 136
           + PLH A    +      L+           +   LL  ++  G   LH ++        
Sbjct: 1   NYPLHQACMENEFFKVQELLH----------SKPSLLLQKDQDGRIPLHWSVSFQAHEIT 50

Query: 137 WRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK 196
                   ++ +      S  T         N+          L     K++        
Sbjct: 51  SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 110

Query: 197 SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK- 255
                  +         I       I     + PL  A    +L +  LL   G SA+  
Sbjct: 111 LA---VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 167

Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
           ++K+   P+  A   GH +  V L++++      V + G      A       + K  + 
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 11/48 (22%), Positives = 17/48 (35%)

Query: 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
           N PLH A +      V  LL    S    K++ G      ++     +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 4e-09
 Identities = 32/208 (15%), Positives = 66/208 (31%), Gaps = 12/208 (5%)

Query: 76  GDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVN 135
           GD+ LH A    +      ++   K       A ++    +N +  T LH A+       
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKG----DLAFLN---FQNNLQQTPLHLAVITNQPEI 54

Query: 136 VWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED 195
                 AG    +      +   LA +     ++     +           +    N   
Sbjct: 55  AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH---LHSILKATNYNG 111

Query: 196 KSPLSLAIEMGNTDVLEYILR--SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSA 253
            + L LA   G   ++E ++   +  +     +G++ L +A   +N  +  LL   G   
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 171

Query: 254 LKKNKETLYPIHLACKNGHANVMVELLK 281
            +   +   P  L        +  +L +
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 6e-08
 Identities = 42/223 (18%), Positives = 64/223 (28%), Gaps = 17/223 (7%)

Query: 41  DGSSLLHVAAKSGHGEITAKIAQY---YPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
           DG S LH+A       +T ++ +        +N  NN   TPLH A              
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT---------NQ 51

Query: 98  FAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNP 157
                          LR         L      L  V V   S     L         N 
Sbjct: 52  PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 111

Query: 158 TLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTD-VLEYILR 216
              +        +     I   LVSL   ++  +    ++ L LA+++ N D V   +  
Sbjct: 112 HTCLHLASIHGYLG----IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 167

Query: 217 SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKE 259
                     G SP Q+   + +  +   L       L+   E
Sbjct: 168 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 1e-07
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 262 YPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNM 321
             +HLA  +G+  ++  L+      +     NG   LH A    + D+V  ++   G ++
Sbjct: 113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADV 171

Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD-LKNKQGMTAY 372
                 N++   G +P  L      +++   L +    N   L   +   +Y
Sbjct: 172 ------NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 217

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 333 DGNTPLHLAALHGHSQVVYALLRYGRS---NPDLKNKQGMTAYKMALREYYMQ 382
           DG++ LHLA +H    +   ++R  +      + +N    T   +A+     +
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPE 53

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
           +G + LH A  +    +   +I     ++     +N  +    TPLHLA +   
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF---LNFQNNLQQTPLHLAVITNQ 51

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (115), Expect = 7e-08
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 9/158 (5%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN 257
            L  A   G  D +  ++ +     +   G SPL +A +  +     +L   G S   + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 258 KETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP 317
           K    P+H+A   GHAN++  L  +               LH+A ++ H ++V+      
Sbjct: 65  KVDRTPLHMAASEGHANIVEVL-LKHGADVNAKDMLKMTALHWATEHNHQEVVEL----- 118

Query: 318 GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
              +     V+   +   T   ++  +G+  +   +L+
Sbjct: 119 --LIKYGADVHTQSKFCKTAFDISIDNGNEDLA-EILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
           D    L  AA  G    V  L+  G   P   +  G +   +A +  +  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG--APFTTDWLGTSPLHLAAQYGHFS 48

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 24/157 (15%), Positives = 44/157 (28%), Gaps = 8/157 (5%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN 257
            LS A   G+   +  +L          +      +           L  +   ++    
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 258 KETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP 317
             +                +++L E           G   +H A + GH  +V  +    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124

Query: 318 GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
                    +++ D  G TPL LA   G   +V  L 
Sbjct: 125 D--------LHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 8e-04
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 334 GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
               L  AA  G  Q V  LL     +PD  N+ G TA ++ +      
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAI 50

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 5e-07
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 34/135 (25%)

Query: 257 NKETLYPIHLACKNGHANVMVELLKEW-----RCPSLFVTDNGCNILHFAAKN---GHAD 308
               L+ +  A K      +++   +      + P     +     LH A ++       
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 309 MVKAIIE--------------------------IPGTNMTMDEVVNKMDEDGNTPLHLAA 342
           +V  +++                               +     +   +E G TPL +A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 343 LHGHSQVVYALLRYG 357
              H      L +  
Sbjct: 123 RLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 198 PLSLAIEMGNTDVLEYILR-------SLPSGISWSSGKSPLQVATK---KRNLGVCYLLE 247
            L  A++  +   L             +P        ++ L +A +   + +L +   L 
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 248 VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA 307
            N  +  K+  +    +H  C   +A  +  LL+      +   ++G   L  A +  H 
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHE 127

Query: 308 DMVKAIIE 315
              + + +
Sbjct: 128 HCEELLTQ 135

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 9/204 (4%)

Query: 176 IAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVAT 235
           +   L++   +L+   +   ++ L LA      D  + +L +     S  +       A 
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 236 KKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-G 294
              +    + + +   +     +       L      A   +          +   DN G
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 295 CNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
              LH+AA   + + V          +      +  D+   TPL LAA  G  +   ALL
Sbjct: 124 KTALHWAAAVNNTEAVN-------ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL 176

Query: 355 RYGRSNPDLKNKQGMTAYKMALRE 378
               +N ++ +        +A   
Sbjct: 177 DNF-ANREITDHMDRLPRDVASER 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 36/231 (15%), Positives = 70/231 (30%), Gaps = 31/231 (13%)

Query: 58  TAKIAQYYPFLIN-------KTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPV 110
           TA++      L+          +  G+T LH AAR  + + A  L+D      S      
Sbjct: 1   TAQVISD---LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 57

Query: 111 DLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNII 170
             L    A     + + L      N+      G++  +  +       +    T   +I 
Sbjct: 58  TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI- 116

Query: 171 NSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMG-NTDVLEYILRSLPSGISWSSGKS 229
                                +   K+ L  A  +     V   ++            ++
Sbjct: 117 ------------------NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDET 158

Query: 230 PLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL 280
           PL +A ++ +      L  N  +    +     P  +A +  H ++ V LL
Sbjct: 159 PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDI-VRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 9e-04
 Identities = 14/58 (24%), Positives = 19/58 (32%)

Query: 325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
           E+   MD+ G T LHLAA    +     LL  G       N      +     +    
Sbjct: 14  ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGV 71

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 2e-06
 Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 7/161 (4%)

Query: 197 SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKK 256
           + L+ A   G+ + L  +L++    ++ ++     + A +   LG   +           
Sbjct: 3   NELASAAARGDLEQLTSLLQN---NVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANP 59

Query: 257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI 316
           + +      +      A  +  L       +    ++    L        A     +  +
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL----HLAAKEGHLRVV 115

Query: 317 PGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
                     V   +  G+T   LA L+G ++VV  +   G
Sbjct: 116 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 5e-04
 Identities = 16/117 (13%), Positives = 27/117 (23%), Gaps = 25/117 (21%)

Query: 263 PIHLACKNGHANVMVELLKE-------------------------WRCPSLFVTDNGCNI 297
            +  A   G    +  LL+                               L   +  C  
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
                +  H    +  ++           ++  D  G  P+ LA   GH  V   L 
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.001
 Identities = 17/118 (14%), Positives = 36/118 (30%)

Query: 198 PLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN 257
            L+ A   G  + +  +L +  +  + +S            +  V  LL ++G      +
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 258 KETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
             TL               + +L             G   +  A + GH D+ + +  
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-50  Score=356.83  Aligned_cols=355  Identities=23%  Similarity=0.242  Sum_probs=300.8

Q ss_pred             HHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHc
Q 040887            7 PAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARA   86 (394)
Q Consensus         7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~   86 (394)
                      ||||.||..|+++.|+++...+.++    +..|.+|+||||+||+.|+.+++++|+++|+ +++.++..|.||||+|+..
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i----n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-di~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP----NVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS----CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSCCCTTSCCHHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC----CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcC-CCCCCCCCCCCHHHHHHHc
Confidence            7999999999999999966556655    6689999999999999999999999999976 7999999999999999999


Q ss_pred             CcHHHHHHHHhhccCCCCCCCCcchh----------------------hhhhhhcCCcHHHHHHHHhCccceeeecccCC
Q 040887           87 GKLNTATALVDFAKHIPSTSQAPVDL----------------------LRMENAMGNTALHEALFMLGRVNVWRTSIAGS  144 (394)
Q Consensus        87 ~~~~~v~~Ll~~ga~~~~~~~~~~~~----------------------~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~  144 (394)
                      |+.+++++|++.++++..........                      ....+..+.++++.++..+....+..++..+.
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999988765544332221                      12235667788888887765555544443333


Q ss_pred             chhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCC
Q 040887          145 SLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GIS  223 (394)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~  223 (394)
                      ....        .......++..++..+..+++++|+..|.+++ ..+..|.||++.++.....++...++..... ...
T Consensus       157 ~~~~--------~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~  227 (408)
T d1n11a_         157 HPNA--------AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE  227 (408)
T ss_dssp             CTTC--------CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCc--------CCCcCchHHHHHHHcCCHHHHHHHHhcCCccc-ccCCCCCCcchhhhccchhhhhhhhhhcccccccc
Confidence            2211        11122345667777888899999999998887 5777889999999999999999888875443 445


Q ss_pred             CCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHH
Q 040887          224 WSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAK  303 (394)
Q Consensus       224 ~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  303 (394)
                      +..+.||++.|+..+..++++.+...+...+..+..|.+|++.|++.++.+++++|++.+.+. +..+..+.||||.++.
T Consensus       228 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~  306 (408)
T d1n11a_         228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASH  306 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcc
Confidence            577899999999999999999999999999999999999999999999999999999987665 7788899999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcch
Q 040887          304 NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT  383 (394)
Q Consensus       304 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~  383 (394)
                      .++.++++++++.|++       +|.+|.+|+||||+|+++|+.+++++|+++| ||++++|.+|+||||+|++.|+.+.
T Consensus       307 ~~~~~~~~~ll~~g~~-------in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G-Ad~n~~d~~G~t~L~~A~~~~~~~i  378 (408)
T d1n11a_         307 YGNIKLVKFLLQHQAD-------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYISV  378 (408)
T ss_dssp             SSCSHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTCHHH
T ss_pred             cCcceeeeeecccccc-------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999       9999999999999999999999999999999 9999999999999999999999765


Q ss_pred             h
Q 040887          384 S  384 (394)
Q Consensus       384 ~  384 (394)
                      .
T Consensus       379 v  379 (408)
T d1n11a_         379 T  379 (408)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-44  Score=316.70  Aligned_cols=323  Identities=25%  Similarity=0.250  Sum_probs=273.6

Q ss_pred             chHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCc
Q 040887           43 SSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNT  122 (394)
Q Consensus        43 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t  122 (394)
                      .||||+||..|+.++|++|+++|+ +++..|..|+||||+||..|+.+++++|+++|++++           ..+..|.|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~-~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~-----------~~~~~g~t   68 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-----------AKAKDDQT   68 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTC-CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-----------CCCTTSCC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-----------CCCCCCCC
Confidence            399999999999999999999975 799999999999999999999999999999999974           45677999


Q ss_pred             HHHHHHHHhCccceeeecccCCchhhh-------------------------hhcccCCcccchhhhhhhhhhhhHHHHH
Q 040887          123 ALHEALFMLGRVNVWRTSIAGSSLTMA-------------------------HSYFLSNPTLAIDDTIKTNIINSLVAIA  177 (394)
Q Consensus       123 ~l~~a~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (394)
                      ||+.|+..+....+..++.........                         ...............+..+...+..+++
T Consensus        69 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v  148 (408)
T d1n11a_          69 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA  148 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHH
Confidence            999999888655544433222111100                         0011111111223345566667778999


Q ss_pred             HHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCcccccc
Q 040887          178 YFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKK  256 (394)
Q Consensus       178 ~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~  256 (394)
                      ++|++.+.+++ ..+.+|.+||++|+..++.+++++|++.+.. +..+..+.||++.++.....+....+...+......
T Consensus       149 ~~ll~~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~  227 (408)
T d1n11a_         149 ELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE  227 (408)
T ss_dssp             HHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHcCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccccccc
Confidence            99999999887 6777899999999999999999999987643 567788999999999999999999999999888889


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCc
Q 040887          257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNT  336 (394)
Q Consensus       257 ~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t  336 (394)
                      +..+.|||+.|+..+..+++++++...... +..+..|.||++.|+..++.+++++|++.|++       ++..+..+.|
T Consensus       228 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-------~~~~~~~~~t  299 (408)
T d1n11a_         228 SVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-------VDATTRMGYT  299 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-------TTCCCSSCCC
T ss_pred             CCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-------cccccccccc
Confidence            999999999999999999999998876655 77889999999999999999999999999999       8999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887          337 PLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE  387 (394)
Q Consensus       337 ~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~  387 (394)
                      |||.|+..++.++++++++.| ++++.+|.+|.||||+|++.|+.+.....
T Consensus       300 ~L~~~~~~~~~~~~~~ll~~g-~~in~~d~~G~T~Lh~A~~~g~~~iv~~L  349 (408)
T d1n11a_         300 PLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLL  349 (408)
T ss_dssp             HHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cchhhcccCcceeeeeecccc-ccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999 99999999999999999999988765443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-42  Score=285.46  Aligned_cols=246  Identities=20%  Similarity=0.161  Sum_probs=176.5

Q ss_pred             hhhcCCCCchHHHHHHhcCCHHHHHHHHHhCC--CCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchh
Q 040887           35 FEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP--FLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDL  112 (394)
Q Consensus        35 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  112 (394)
                      +..++++|+||||+||+.|+.+++++|++.++  ..++..|..|+||||+||..|+.+++++|+++|++++         
T Consensus         2 ~~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~---------   72 (255)
T d1oy3d_           2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---------   72 (255)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---------
T ss_pred             CccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccc---------
Confidence            34578999999999999999999999999864  2377888999999999999999999999999999874         


Q ss_pred             hhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccC
Q 040887          113 LRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKN  192 (394)
Q Consensus       113 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (394)
                        ..|..|.||||.|+..+                  ..                       +++++|++.+....... 
T Consensus        73 --~~d~~g~tpL~~A~~~~------------------~~-----------------------~~~~~Ll~~~~~~~~~~-  108 (255)
T d1oy3d_          73 --VAERGGHTALHLACRVR------------------AH-----------------------TCACVLLQPRPSHPRDA-  108 (255)
T ss_dssp             --CCCTTSCCHHHHHTTTT------------------CH-----------------------HHHHHHSSSCCSSCCCC-
T ss_pred             --ccccccchhhhhhhccC------------------ch-----------------------HHHHHHHhhccchhccc-
Confidence              23445566666655433                  11                       44444444433221100 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCH-HHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887          193 IEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIHLACKNG  271 (394)
Q Consensus       193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~  271 (394)
                         ...+.........                .....++......... .........+.+++.++..|.||||+|++.+
T Consensus       109 ---~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~  169 (255)
T d1oy3d_         109 ---SDTYLTQSQDCTP----------------DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK  169 (255)
T ss_dssp             ------------------------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTT
T ss_pred             ---chhhhhHHhhhcc----------------cchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccc
Confidence               0000000000000                0000111111111111 2333344556778889999999999999999


Q ss_pred             CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887          272 HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       272 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  351 (394)
                      +.+++++|++.+.......+..|.||||+|++.|+.+++++|+++|++       ++.+|..|+||||+|+..++.++++
T Consensus       170 ~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad-------in~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-------PTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             ccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            999999999998888777788999999999999999999999999999       9999999999999999999999999


Q ss_pred             HHHhcCCCC
Q 040887          352 ALLRYGRSN  360 (394)
Q Consensus       352 ~Ll~~g~ad  360 (394)
                      +|+++| |+
T Consensus       243 ~Ll~~G-a~  250 (255)
T d1oy3d_         243 LLRAHG-AP  250 (255)
T ss_dssp             HHHHTT-CC
T ss_pred             HHHHcC-CC
Confidence            999999 65

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-39  Score=264.45  Aligned_cols=224  Identities=20%  Similarity=0.214  Sum_probs=194.5

Q ss_pred             chHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCc
Q 040887           43 SSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNT  122 (394)
Q Consensus        43 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t  122 (394)
                      +||||+||..|+.++|+.|++..+.+++.+|.+|+||||+|+..|+.+++++|+++|++++...                
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~----------------   64 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD----------------   64 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGG----------------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccc----------------
Confidence            5899999999999999999998888899999999999999999999999999999998763110                


Q ss_pred             HHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHH
Q 040887          123 ALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLA  202 (394)
Q Consensus       123 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a  202 (394)
                                                                                         ..+..|.+|++++
T Consensus        65 -------------------------------------------------------------------~~~~~~~~~~~~~   77 (229)
T d1ixva_          65 -------------------------------------------------------------------YPDDSGWTPFHIA   77 (229)
T ss_dssp             -------------------------------------------------------------------CCCTTSCCHHHHH
T ss_pred             -------------------------------------------------------------------ccccccccccccc
Confidence                                                                               2344577888888


Q ss_pred             HHcCCHHHHHHHHHhCCC---CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          203 IEMGNTDVLEYILRSLPS---GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVEL  279 (394)
Q Consensus       203 ~~~~~~~~~~~ll~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~L  279 (394)
                      +..+..++++.++..+..   ...+..+.++++.++..++.++++.|+..|.+.+..+..|+||||+|+..|+.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc
Confidence            888888888877765432   34456678899999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHh-CCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 040887          280 LKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR  358 (394)
Q Consensus       280 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  358 (394)
                      ++.++..++.+|.+|+||||+|+.+|+.+++++|++ .|++       ++.+|.+|+||||+|+.   .+++++|+++| 
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad-------~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g-  226 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-------YDLVDNKGAKAEDVALN---EQVKKFFLNNV-  226 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-------SCCCCTTSCCTGGGCSC---HHHHHHHHHHC-
T ss_pred             cccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC-------CCCcCCCCCCHHHHHhh---HHHHHHHHHcC-
Confidence            998877778899999999999999999999999996 5888       89999999999999984   58999999998 


Q ss_pred             CC
Q 040887          359 SN  360 (394)
Q Consensus       359 ad  360 (394)
                      +|
T Consensus       227 ~d  228 (229)
T d1ixva_         227 VD  228 (229)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=266.45  Aligned_cols=263  Identities=17%  Similarity=0.161  Sum_probs=220.2

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHhCCCCccccc-CCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhc
Q 040887           41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTN-NQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAM  119 (394)
Q Consensus        41 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~  119 (394)
                      ++.|+||.||+.|+.++|++|+++|+ +++.++ ..|+||||+|+..|+.+++++|++.|....           ..+..
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~-din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-----------~~~~~   71 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-----------LRKKN   71 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------CCCTT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCC-CcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-----------ccccc
Confidence            36799999999999999999999975 687665 579999999999999999999999988763           33445


Q ss_pred             CCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHH
Q 040887          120 GNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPL  199 (394)
Q Consensus       120 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  199 (394)
                      +.+|.+.+...+                  .                       .+...+.++...+.. ..+..+.+++
T Consensus        72 ~~~~~~~~~~~~------------------~-----------------------~~~~~~~~~~~~~~~-~~~~~~~~~l  109 (285)
T d1wdya_          72 GATPFLLAAIAG------------------S-----------------------VKLLKLFLSKGADVN-ECDFYGFTAF  109 (285)
T ss_dssp             CCCHHHHHHHHT------------------C-----------------------HHHHHHHHHTTCCTT-CBCTTCCBHH
T ss_pred             cchhhHHHhhcC------------------C-----------------------ccccchhhhhccccc-ccccCCCchh
Confidence            777887776655                  1                       155566666655543 4677899999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCC-----------CCCCCCCCChHHHHHhcCCHHHHHHHHh-cCccccccCCCCCcHHHHH
Q 040887          200 SLAIEMGNTDVLEYILRSLPS-----------GISWSSGKSPLQVATKKRNLGVCYLLEV-NGYSALKKNKETLYPIHLA  267 (394)
Q Consensus       200 ~~a~~~~~~~~~~~ll~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g~~~l~~a  267 (394)
                      +.|+..++...+..++.....           ......|.||||+|++.++.+++++|++ .|++++..+..|.++++.+
T Consensus       110 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~  189 (285)
T d1wdya_         110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA  189 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccc
Confidence            999999999999988875433           1223668999999999999999998885 5899999999999988876


Q ss_pred             HHcC----CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhC-CCCCCcchhhccccCCCCCcHHHHHH
Q 040887          268 CKNG----HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI-PGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       268 ~~~~----~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      ...+    ..+++++|++.+.+. +.++..|.||||+|+..|+.+++++|++. |++       ++.+|.+|+||||+|+
T Consensus       190 ~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d-------in~~d~~G~TpL~~A~  261 (285)
T d1wdya_         190 LLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-------INDTDSDGKTALLLAV  261 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-------TTCCCTTSCCHHHHHH
T ss_pred             cccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHcCCCC-------CcCCCCCCCCHHHHHH
Confidence            5543    356889999987665 88899999999999999999999999985 667       9999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCccc
Q 040887          343 LHGHSQVVYALLRYGRSNPDLKNK  366 (394)
Q Consensus       343 ~~~~~~~~~~Ll~~g~ad~~~~~~  366 (394)
                      ++|+.+++++||++| ||+|++|.
T Consensus       262 ~~~~~eiv~~Ll~~G-Ad~n~~d~  284 (285)
T d1wdya_         262 ELKLKKIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             HTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred             HcCCHHHHHHHHHCC-CCCCcccC
Confidence            999999999999999 99999884

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=257.63  Aligned_cols=219  Identities=20%  Similarity=0.239  Sum_probs=191.2

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCC
Q 040887           42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGN  121 (394)
Q Consensus        42 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  121 (394)
                      .++.|+.+|..|+.+.|+.++...+.+++.+|..|+||||+|+..|+.+++++|++.+.+..                  
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~------------------   64 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN------------------   64 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC------------------
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc------------------
Confidence            45789999999999999999988888899999999999999999999999999998866542                  


Q ss_pred             cHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 040887          122 TALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSL  201 (394)
Q Consensus       122 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  201 (394)
                                                                                          ..+..+.++++.
T Consensus        65 --------------------------------------------------------------------~~~~~~~~~~~~   76 (223)
T d1uoha_          65 --------------------------------------------------------------------DKDDAGWSPLHI   76 (223)
T ss_dssp             --------------------------------------------------------------------CCCTTCCCHHHH
T ss_pred             --------------------------------------------------------------------cccccccccccc
Confidence                                                                                122345678888


Q ss_pred             HHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887          202 AIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL  280 (394)
Q Consensus       202 a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll  280 (394)
                      ++..++.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..+..+++++|+
T Consensus        77 ~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~  156 (223)
T d1uoha_          77 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL  156 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhc
Confidence            8888888888888876533 556777888999999999999999999999999999999999999999999999999998


Q ss_pred             HhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040887          281 KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR  355 (394)
Q Consensus       281 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  355 (394)
                      ..+.+. +..|..|+||||+|+..|+.+++++|++.|++       ++.+|.+|+||||+| ..|+.+++++||+
T Consensus       157 ~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad-------~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         157 YYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-------IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             ccccee-eeccCCCCceeccccccCcHHHHHHHHHCCCC-------CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            876664 88999999999999999999999999999999       999999999999998 4789999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.9e-38  Score=265.21  Aligned_cols=262  Identities=14%  Similarity=0.084  Sum_probs=189.4

Q ss_pred             CHHHHHHHHhccchhhhhcc-CCccchhhHhhhcC-CCCchHHHHHHhcCCHHHHHHHHHhC-------CCCcccccCCC
Q 040887            6 DPAYFEAAIRGNIDDFLFSD-IPKQDLHHIFEKVL-TDGSSLLHVAAKSGHGEITAKIAQYY-------PFLINKTNNQG   76 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~-------~~~~~~~~~~g   76 (394)
                      +||||.++..+..+.++... ..+.+      ..+ .+|+||||+||..|+.++|++|+...       +.++|.+|..|
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G   74 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE   74 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC------cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCC
Confidence            57888777777776666633 32333      244 46999999999999999998875431       34899999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCC
Q 040887           77 DTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSN  156 (394)
Q Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (394)
                      +||||+|+..|+.+++++|+++|++++           ..+..|.||++.+...+..                       
T Consensus        75 ~TpLh~A~~~g~~~iv~~Ll~~Gad~n-----------~~~~~g~t~l~~a~~~~~~-----------------------  120 (277)
T d2fo1e1          75 NTPLMLAVLARRRRLVAYLMKAGADPT-----------IYNKSERSALHQAAANRDF-----------------------  120 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSC-----------CCCTTCCCHHHHHHHTTCH-----------------------
T ss_pred             Ceeeccccccccccccccccccccccc-----------cccccccccccchhhhcch-----------------------
Confidence            999999999999999999999999974           3345567777776655411                       


Q ss_pred             cccchhhhhhhhhhhhHHHHHHHHHhcCC--CCccccCCCCCcHHHHHHHcCCHH---HHHHHHHhCCCCCCCCCCCChH
Q 040887          157 PTLAIDDTIKTNIINSLVAIAYFLVSLDP--KLSCCKNIEDKSPLSLAIEMGNTD---VLEYILRSLPSGISWSSGKSPL  231 (394)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~l~~a~~~~~~~---~~~~ll~~~~~~~~~~~~~~~l  231 (394)
                                        .+..++...+.  ......+..+.++.+.+...+..+   .+..+.+.......        
T Consensus       121 ------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  174 (277)
T d2fo1e1         121 ------------------GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY--------  174 (277)
T ss_dssp             ------------------HHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC--------
T ss_pred             ------------------hhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccc--------
Confidence                              11222211110  000123445556666655544322   22222222111000        


Q ss_pred             HHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHH
Q 040887          232 QVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVK  311 (394)
Q Consensus       232 ~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  311 (394)
                                      ......+..+..|.||||.++..++.+++.+++...+...+.+|..|.||||+|+..|+.++++
T Consensus       175 ----------------~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~  238 (277)
T d2fo1e1         175 ----------------DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM  238 (277)
T ss_dssp             ----------------CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ----------------cccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHH
Confidence                            0112234567789999999999999999999888878877889999999999999999999999


Q ss_pred             HHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040887          312 AIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY  356 (394)
Q Consensus       312 ~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  356 (394)
                      +|+++|++       ++.+|.+|+||||+|++.|+.+++++|++.
T Consensus       239 ~Ll~~gad-------in~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         239 YLIQQGAS-------VEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHTTCC-------SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHCcCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999       999999999999999999999999999863

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-36  Score=242.23  Aligned_cols=202  Identities=22%  Similarity=0.250  Sum_probs=183.3

Q ss_pred             hhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhc
Q 040887          171 NSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVN  249 (394)
Q Consensus       171 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~  249 (394)
                      .+..+.++.+++.++.....+|..|+||||+|+..|+.+++++++..... ......+.++++.++..++.+++++|++.
T Consensus        13 ~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~   92 (223)
T d1uoha_          13 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK   92 (223)
T ss_dssp             TTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhcc
Confidence            33447777777777766668999999999999999999999999987654 44456678999999999999999999999


Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccc
Q 040887          250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK  329 (394)
Q Consensus       250 g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  329 (394)
                      |++++..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+..++.+++++|++.+.+       ++.
T Consensus        93 ~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~-------i~~  164 (223)
T d1uoha_          93 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-------TNI  164 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------SCC
T ss_pred             CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccce-------eee
Confidence            9999999999999999999999999999999987665 88899999999999999999999999999999       999


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcc
Q 040887          330 MDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ  382 (394)
Q Consensus       330 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~  382 (394)
                      +|..|+||||+|+..|+.+++++|+++| +|++.+|.+|+||||+|. .|+.+
T Consensus       165 ~d~~g~TpL~~Aa~~g~~~~v~~LL~~G-ad~~~~d~~g~tpl~~A~-~~~~~  215 (223)
T d1uoha_         165 QDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVAK-GGLGL  215 (223)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHCC-TTHHH
T ss_pred             ccCCCCceeccccccCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-CCCHH
Confidence            9999999999999999999999999999 999999999999999984 45544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=6.9e-37  Score=258.51  Aligned_cols=236  Identities=26%  Similarity=0.270  Sum_probs=179.5

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhh
Q 040887           39 LTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENA  118 (394)
Q Consensus        39 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  118 (394)
                      +.+|.|+|+.||..|+.++|++||++|+ +++..|..|.||||+|+..|+.+++++|+++|+++..              
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Ga-dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~--------------  101 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGA-DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ--------------  101 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCC-CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC--------------
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCC-CCCccCCCCCcHHHHHHhcCCceeeeeeccccccccc--------------
Confidence            4557899999999999999999999976 7999999999999999999999999999999877531              


Q ss_pred             cCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcH
Q 040887          119 MGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSP  198 (394)
Q Consensus       119 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  198 (394)
                                                                                              .+..+.+|
T Consensus       102 ------------------------------------------------------------------------~~~~~~~~  109 (291)
T d1s70b_         102 ------------------------------------------------------------------------PDNEGWIP  109 (291)
T ss_dssp             ------------------------------------------------------------------------CCTTSCCH
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    22235566


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHh-cCccccccCCCCCcHHHHHHHcCCHHHH
Q 040887          199 LSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEV-NGYSALKKNKETLYPIHLACKNGHANVM  276 (394)
Q Consensus       199 l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g~~~l~~a~~~~~~~~v  276 (394)
                      |+.++..++.++++.|++.+.. ...+..+.+++++|+..+..+.+..++. .+.++......+..+.        ....
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~--------~~~~  181 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--------LRDA  181 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HHHH
T ss_pred             ccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccc--------cccc
Confidence            6666666677777776665433 3445566677777776666655555443 3333222111111111        1112


Q ss_pred             HHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040887          277 VELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY  356 (394)
Q Consensus       277 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  356 (394)
                      ...+..........+..|.||||+|+..|+.+++++|++.|++       ++.++..|+||||+|+..|+.+++++|+++
T Consensus       182 ~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-------in~~~~~g~TpL~~A~~~g~~~iv~lLl~~  254 (291)
T d1s70b_         182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-------VNIKDYDGWTPLHAAAHWGKEEACRILVEN  254 (291)
T ss_dssp             HHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec-------ccccccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            2233333444466778899999999999999999999999998       999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCcHHHHHHh
Q 040887          357 GRSNPDLKNKQGMTAYKMALR  377 (394)
Q Consensus       357 g~ad~~~~~~~g~t~l~~a~~  377 (394)
                      | +|++.+|..|+||||+|++
T Consensus       255 G-adv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         255 L-CDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             T-CCTTCCCTTSCCTTTSCCS
T ss_pred             C-CCCCCcCCCCCCHHHHHHH
Confidence            9 9999999999999999976

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-35  Score=246.22  Aligned_cols=243  Identities=21%  Similarity=0.201  Sum_probs=170.5

Q ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhh
Q 040887           70 NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMA  149 (394)
Q Consensus        70 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~  149 (394)
                      ...+.+|+||||+||..|+.+++++|+++|+++.        .++.++..|.||||+|+..+                  
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~--------~i~~~~~~g~TpL~~A~~~g------------------   56 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE--------YLDLQNDLGQTALHLAAILG------------------   56 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG--------GGGCCCTTSCCHHHHHHHHT------------------
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------cccCcCCCCCCccchHHhhc------------------
Confidence            3457899999999999999999999999998853        23556778888888888766                  


Q ss_pred             hhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCC
Q 040887          150 HSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKS  229 (394)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  229 (394)
                      +.                       +++++|++.|.+++ .++..|.|||++|+..++.+++++|++...........  
T Consensus        57 ~~-----------------------~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--  110 (255)
T d1oy3d_          57 EA-----------------------STVEKLYAAGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD--  110 (255)
T ss_dssp             CH-----------------------HHHHHHHHTTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----
T ss_pred             cc-----------------------cccccccccccccc-ccccccchhhhhhhccCchHHHHHHHhhccchhcccch--
Confidence            22                       88888888888877 57778888888888888888888887654332211110  


Q ss_pred             hHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHH
Q 040887          230 PLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM  309 (394)
Q Consensus       230 ~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  309 (394)
                      .+.......                 .......++..............+........+.++..|.||||+|+..++.++
T Consensus       111 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~  173 (255)
T d1oy3d_         111 TYLTQSQDC-----------------TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM  173 (255)
T ss_dssp             --------------------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hhhhHHhhh-----------------cccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccccccc
Confidence            100000000                 000001111111111111222222223333446788999999999999999999


Q ss_pred             HHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887          310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK  388 (394)
Q Consensus       310 ~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~  388 (394)
                      +++|++.+++.      ....+..|.||||+|++.|+.+++++|+++| ++++.+|..|.||||+|++.+..+..-...
T Consensus       174 v~~Ll~~~~~~------~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g-adin~~d~~g~t~L~~A~~~~~~~i~~~Ll  245 (255)
T d1oy3d_         174 VRLLRDAGADL------NKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLR  245 (255)
T ss_dssp             HHHHHHHTCCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             ccchhcccccc------cccccccccccccccccccHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999999983      3445778999999999999999999999999 999999999999999999999987764443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.6e-36  Score=254.49  Aligned_cols=255  Identities=20%  Similarity=0.255  Sum_probs=195.6

Q ss_pred             chHHHHHHhc-CCHHHHHHHHHhCCCCccccc-CCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcC
Q 040887           43 SSLLHVAAKS-GHGEITAKIAQYYPFLINKTN-NQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG  120 (394)
Q Consensus        43 ~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  120 (394)
                      .||||++++. |+.++++.|.+. +  ++..+ ..|+||||+||..|+.++|++|+.+                      
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~-~--~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~----------------------   55 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRE-S--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVH----------------------   55 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTT-T--TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHH----------------------
T ss_pred             CChHHHHHHhCCCHHHHHHHHhc-C--CCcCCCCCCccHHHHHHHcCCHHHHHHHHhc----------------------
Confidence            4799877765 555555555554 3  44444 4699999999999999999999863                      


Q ss_pred             CcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHH
Q 040887          121 NTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLS  200 (394)
Q Consensus       121 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  200 (394)
                                                                             ..+.+++.|.+++ .+|..|.||||
T Consensus        56 -------------------------------------------------------~~~~~l~~Gadvn-~~d~~G~TpLh   79 (277)
T d2fo1e1          56 -------------------------------------------------------EAKECIAAGADVN-AMDCDENTPLM   79 (277)
T ss_dssp             -------------------------------------------------------HHHHHHHTCCCTT-CCCTTSCCHHH
T ss_pred             -------------------------------------------------------chhHHHHcCCCcc-ccCCCCCeeec
Confidence                                                                   3355666777777 56778888888


Q ss_pred             HHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcC---ccccccCCCCCcHHHHHHHcCCHHH-
Q 040887          201 LAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNG---YSALKKNKETLYPIHLACKNGHANV-  275 (394)
Q Consensus       201 ~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g---~~~~~~~~~g~~~l~~a~~~~~~~~-  275 (394)
                      +|+..|+.+++++|++.+.. +..+..|.||++.|+..++..++..+...+   ..++..+..+.++.+.+...+..+. 
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV  159 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccc
Confidence            88888888888888887543 556677888888888888887777776554   2345566777888888888776543 


Q ss_pred             --HHHHHHhcCC-------CCccccCCCchHHHHHHHcCCHHHHHHHHh-CCCCCCcchhhccccCCCCCcHHHHHHHcC
Q 040887          276 --MVELLKEWRC-------PSLFVTDNGCNILHFAAKNGHADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTPLHLAALHG  345 (394)
Q Consensus       276 --v~~Ll~~~~~-------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  345 (394)
                        +..+......       .....+..|.||||+++..++.+++++++. .+.+       ++.+|..|+||||+|+..|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~-------~~~~d~~g~tpL~~A~~~g  232 (277)
T d2fo1e1         160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-------KDKQDEDGKTPIMLAAQEG  232 (277)
T ss_dssp             HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-------TTCCCTTCCCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccCCCCcccccccccccccccccccccccc-------ccccCCCCCCHHHHHHHcC
Confidence              3333332211       123456679999999999999999997664 5555       8889999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhh
Q 040887          346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIA  386 (394)
Q Consensus       346 ~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~  386 (394)
                      +.+++++|+++| +|++.+|.+|.||||+|++.|+.+..-.
T Consensus       233 ~~~iv~~Ll~~g-adin~~d~~G~T~L~~A~~~~~~~iv~l  272 (277)
T d2fo1e1         233 RIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDI  272 (277)
T ss_dssp             CHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999 9999999999999999999998766543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=241.47  Aligned_cols=264  Identities=17%  Similarity=0.106  Sum_probs=215.5

Q ss_pred             CCHHHHHHHHhccchhhhhccCCccchhhHhhhc-CCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHH
Q 040887            5 LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKV-LTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCA   83 (394)
Q Consensus         5 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   83 (394)
                      .++.|+.|+++||++.|+++...+.++    +.+ +..|.||||+||..|+.+++++|++.+. .....+..+.+|.+.|
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~di----n~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~-~~~~~~~~~~~~~~~~   79 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANV----NFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCc----CccCCCCCCCHHHHHHHcCCHHHhhhhccccc-cccccccccchhhHHH
Confidence            378999999999999999966666665    334 4579999999999999999999999976 5777788999999999


Q ss_pred             HHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhh
Q 040887           84 ARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDD  163 (394)
Q Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (394)
                      +..+..+...++++...+.           ...+..+.++++.++..+..                              
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~a~~~~~~------------------------------  118 (285)
T d1wdya_          80 AIAGSVKLLKLFLSKGADV-----------NECDFYGFTAFMEAAVYGKV------------------------------  118 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-----------TCBCTTCCBHHHHHHHTTCH------------------------------
T ss_pred             hhcCCccccchhhhhcccc-----------cccccCCCchhHHHHHhcch------------------------------
Confidence            9999999999999986553           23456788899998876622                              


Q ss_pred             hhhhhhhhhHHHHHHHHHhcCCCCc---------cccCCCCCcHHHHHHHcCCHHHHHHHHHhC--CCCCCCCCCCChHH
Q 040887          164 TIKTNIINSLVAIAYFLVSLDPKLS---------CCKNIEDKSPLSLAIEMGNTDVLEYILRSL--PSGISWSSGKSPLQ  232 (394)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~  232 (394)
                                 ..+..++....+..         ......|.||||+|+..++.+++++|++..  ..+..+..+.++..
T Consensus       119 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~  187 (285)
T d1wdya_         119 -----------KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI  187 (285)
T ss_dssp             -----------HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH
T ss_pred             -----------hhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccc
Confidence                       22233333222211         134556899999999999999999999864  33555667777777


Q ss_pred             HHHhcC----CHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHH
Q 040887          233 VATKKR----NLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD  308 (394)
Q Consensus       233 ~a~~~~----~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  308 (394)
                      .+...+    ...++++|++.|++++.++..|.||||.|++.|+.+++++|++..+.+++.+|.+|.||||+|+++|+.+
T Consensus       188 ~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~e  267 (285)
T d1wdya_         188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            654433    2378999999999999999999999999999999999999999877777999999999999999999999


Q ss_pred             HHHHHHhCCCCCCcchhhccccCC
Q 040887          309 MVKAIIEIPGTNMTMDEVVNKMDE  332 (394)
Q Consensus       309 ~~~~Ll~~~~~~~~~~~~~~~~~~  332 (394)
                      ++++|+++|++       +|++|.
T Consensus       268 iv~~Ll~~GAd-------~n~~d~  284 (285)
T d1wdya_         268 IAELLCKRGAS-------TDCGDL  284 (285)
T ss_dssp             HHHHHHHHSSC-------SCCSSC
T ss_pred             HHHHHHHCCCC-------CCcccC
Confidence            99999999999       888774

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-34  Score=235.48  Aligned_cols=223  Identities=19%  Similarity=0.172  Sum_probs=182.4

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCc---ccccCCCCCHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLI---NKTNNQGDTPLHC   82 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~g~t~L~~   82 (394)
                      ++|||+||.+|+++.++.+.....   ..++.+|.+|+||||+||..|+.+++++|++.|+ ++   +..+..|.||+|+
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~---~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~~~~~~~~~~~   76 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKP---SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME-NVNLDDYPDDSGWTPFHI   76 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCG---GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCT-TCCGGGCCCTTSCCHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCC---CcccccCCCCCCHHHHHHHcCCccccchhhhhhc-cccccccccccccccccc
Confidence            589999999999999998443222   2357899999999999999999999999999975 44   4567889999999


Q ss_pred             HHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchh
Q 040887           83 AARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAID  162 (394)
Q Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (394)
                      |+..+..++++.++..+......                                                         
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------   99 (229)
T d1ixva_          77 ACSVGNLEVVKSLYDRPLKPDLN---------------------------------------------------------   99 (229)
T ss_dssp             HHHHTCHHHHHHHHSSSSCCCTT---------------------------------------------------------
T ss_pred             ccccccccccccccccccccccc---------------------------------------------------------
Confidence            99999999999999887654211                                                         


Q ss_pred             hhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHH
Q 040887          163 DTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLG  241 (394)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~  241 (394)
                                                 ..+..+.++++.++..++.+++++|++.+.. ...+..|.||||.|+..++.+
T Consensus       100 ---------------------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_         100 ---------------------------KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             ---------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             ---------------------------ccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccc
Confidence                                       2333566788888888888888888776544 445677888888888888888


Q ss_pred             HHHHHHhcC-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 040887          242 VCYLLEVNG-YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGT  319 (394)
Q Consensus       242 ~~~~L~~~g-~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  319 (394)
                      ++++|++.+ .+++.++..|.||||+|+.+|+.+++++|+++.+.+++.+|..|.||||+|+.   .+++++|+++|++
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            888888876 67788899999999999999999999999987665568899999999999874   5799999999875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-34  Score=230.81  Aligned_cols=222  Identities=23%  Similarity=0.234  Sum_probs=184.0

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHHh---CCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhh
Q 040887           40 TDGSSLLHVAAKSGHGEITAKIAQY---YPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRME  116 (394)
Q Consensus        40 ~~g~t~Lh~A~~~g~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  116 (394)
                      ++|+||||+||+.|+.+++++|++.   .+.+++.+|..|+||||+|+..|+.+++++|+++|++++.            
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~------------   68 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA------------   68 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------------
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccc------------
Confidence            4799999999999999999999862   3558999999999999999999999999999999887632            


Q ss_pred             hhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCC
Q 040887          117 NAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK  196 (394)
Q Consensus       117 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  196 (394)
                                                                                                ....+.
T Consensus        69 --------------------------------------------------------------------------~~~~~~   74 (228)
T d1k1aa_          69 --------------------------------------------------------------------------LDRHGQ   74 (228)
T ss_dssp             --------------------------------------------------------------------------CCTTSC
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      233466


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHH
Q 040887          197 SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVM  276 (394)
Q Consensus       197 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v  276 (394)
                      ++++.|...++.++++.+........                            ...+.......++++.+.........
T Consensus        75 ~~~~~a~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~  126 (228)
T d1k1aa_          75 TAAHLACEHRSPTCLRALLDSAAPGT----------------------------LDLEARNYDGLTALHVAVNTECQETV  126 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTS----------------------------CCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccchhhhhhcccccc----------------------------ccccccccccccccccccccccchhh
Confidence            78888888888888887766532211                            11223445566788888888888888


Q ss_pred             HHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040887          277 VELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY  356 (394)
Q Consensus       277 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  356 (394)
                      ..|..............+.++|+.|+..+...+++++++.|..       ++.+|..|+||||+|+..|+.+++++|+++
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  199 (228)
T d1k1aa_         127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-------VNAQMYSGSSALHSASGRGLLPLVRTLVRS  199 (228)
T ss_dssp             HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             hhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc-------cccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence            8888877666666777889999999999999999999999988       888999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCcHHHHHHhhhhcch
Q 040887          357 GRSNPDLKNKQGMTAYKMALREYYMQT  383 (394)
Q Consensus       357 g~ad~~~~~~~g~t~l~~a~~~~~~~~  383 (394)
                      | +|++++|.+|.||||+|+++|+.+.
T Consensus       200 G-ad~n~~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         200 G-ADSSLKNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             T-CCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             C-CCCCCCCCCCCCHHHHHHhCCCccc
Confidence            8 9999999999999999998887543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.2e-34  Score=244.76  Aligned_cols=244  Identities=20%  Similarity=0.247  Sum_probs=187.6

Q ss_pred             CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887            6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR   85 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   85 (394)
                      .|+|+.||..||++.|+++...+.++    +.+|.+|.||||+|+..|+.+++++|++++. +....+..+.|||++|+.
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadv----n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADI----NYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCT----TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCC----CccCCCCCcHHHHHHhcCCceeeeeeccccc-cccccccccccccccccc
Confidence            58899999999999999966666665    6799999999999999999999999999975 678888999999999999


Q ss_pred             cCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887           86 AGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI  165 (394)
Q Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (394)
                      .++.+++++|++.|+..+           ..+.                                               
T Consensus       116 ~~~~~~~~~l~~~~~~~~-----------~~~~-----------------------------------------------  137 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVG-----------AVNS-----------------------------------------------  137 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTT-----------CCCT-----------------------------------------------
T ss_pred             ccccchhhcccccCcccc-----------cccc-----------------------------------------------
Confidence            999999999999987653           1222                                               


Q ss_pred             hhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHH
Q 040887          166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYL  245 (394)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  245 (394)
                                                  .+.+++++|+..+..+.++.++.......     ..................
T Consensus       138 ----------------------------~~~~~~~~a~~~~~~~~~~~ll~~~~~~~-----~~~~~~~~~~~~~~~~~~  184 (291)
T d1s70b_         138 ----------------------------EGDTPLDIAEEEAMEELLQNEVNRQGVDI-----EAARKEEERIMLRDARQW  184 (291)
T ss_dssp             ----------------------------TSCCHHHHCCSHHHHHHHHHHHHHHTCCH-----HHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------cCccccccccccccchhcccccccccccc-----ccccccccccccccchhh
Confidence                                        34455555555555555555554311100     000000000111133444


Q ss_pred             HHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchh
Q 040887          246 LEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDE  325 (394)
Q Consensus       246 L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  325 (394)
                      +..........+..|.||||.|+..|+.+++++|++.+.+. +.++..|+||||+|+..|+.++|++|+++|++      
T Consensus       185 ~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad------  257 (291)
T d1s70b_         185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD------  257 (291)
T ss_dssp             HHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred             hcccccccccccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCCCC------
Confidence            55555566677888999999999999999999999887665 88899999999999999999999999999999      


Q ss_pred             hccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       326 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                       ++.+|..|+||||+|++    +++++|.+..
T Consensus       258 -v~~~d~~G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         258 -MEAVNKVGQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             -TTCCCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             -CCCcCCCCCCHHHHHHH----HHHHHHHHHh
Confidence             99999999999999975    5666666543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-34  Score=230.14  Aligned_cols=197  Identities=22%  Similarity=0.234  Sum_probs=163.1

Q ss_pred             CCchHHHHHHhcCCHHHHHH----HHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhh
Q 040887           41 DGSSLLHVAAKSGHGEITAK----IAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRME  116 (394)
Q Consensus        41 ~g~t~Lh~A~~~g~~~~v~~----Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  116 (394)
                      +|.||||+|+..|+.++++.    +...+ .+++..|..|+||||+||..|+.+++++|+++|++++             
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~-~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-------------   66 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDL-AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-------------   66 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----C-CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-------------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCC-CCcccCCCCCCcccccccccccccccccccccccccc-------------
Confidence            69999999999998655544    44454 4789999999999999999999999999999988764             


Q ss_pred             hhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCC
Q 040887          117 NAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK  196 (394)
Q Consensus       117 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  196 (394)
                                                                                               .++..|.
T Consensus        67 -------------------------------------------------------------------------~~d~~g~   73 (221)
T d1iknd_          67 -------------------------------------------------------------------------LRDFRGN   73 (221)
T ss_dssp             -------------------------------------------------------------------------CCCTTCC
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     3455678


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHH
Q 040887          197 SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVM  276 (394)
Q Consensus       197 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v  276 (394)
                      +||++++..++.++++.+++.+.....                          ..........|.||||.|+..++.+++
T Consensus        74 t~l~~~~~~~~~~~~~~l~~~~~~~~~--------------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~  127 (221)
T d1iknd_          74 TPLHLACEQGCLASVGVLTQSCTTPHL--------------------------HSILKATNYNGHTCLHLASIHGYLGIV  127 (221)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSS--------------------------SCGGGCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccchhhhhcccccc--------------------------cccccccccccchhhhHHhhcCChhhe
Confidence            888888888888888888875432111                          112334556688999999999999999


Q ss_pred             HHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040887          277 VELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY  356 (394)
Q Consensus       277 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  356 (394)
                      .+|+..+.......+.+|.||||+|+..|+.+++++|+++|++       ++.+|.+|+||||+|+..++.+++++|++.
T Consensus       128 ~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-------~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         128 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             eeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc-------ccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999988877555667899999999999999999999999999       999999999999999999999999999998


Q ss_pred             C
Q 040887          357 G  357 (394)
Q Consensus       357 g  357 (394)
                      +
T Consensus       201 ~  201 (221)
T d1iknd_         201 T  201 (221)
T ss_dssp             S
T ss_pred             C
Confidence            7

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.6e-32  Score=217.72  Aligned_cols=204  Identities=20%  Similarity=0.244  Sum_probs=169.8

Q ss_pred             HHHHHHHHHhCCCCccc-ccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCc
Q 040887           55 GEITAKIAQYYPFLINK-TNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGR  133 (394)
Q Consensus        55 ~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~  133 (394)
                      .++|++|+++|+ +++. .|.+|+||||+||..|+.+++++|++.|++++.                             
T Consensus         2 ~~~v~~Ll~~g~-din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~-----------------------------   51 (209)
T d1ot8a_           2 AQVISDLLAQGA-ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANS-----------------------------   51 (209)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------------------------
T ss_pred             HHHHHHHHHCCC-CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccc-----------------------------
Confidence            588999999976 6876 588999999999999999999999999888642                             


Q ss_pred             cceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887          134 VNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEY  213 (394)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  213 (394)
                                                                               ++..+.++++.++..++......
T Consensus        52 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_          52 ---------------------------------------------------------QDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             ---------------------------------------------------------CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ---------------------------------------------------------ccccccccccccccccccccccc
Confidence                                                                     23345556666666666555444


Q ss_pred             HHHhCCC--CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc
Q 040887          214 ILRSLPS--GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT  291 (394)
Q Consensus       214 ll~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~  291 (394)
                      .......  ......+.++.+.+.........+.|...+.+++.++..|.|||+.++..+..+++..+++.+... +..|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d  153 (209)
T d1ot8a_          75 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQD  153 (209)
T ss_dssp             HHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc-cccc
Confidence            4433222  333355677777777778888888899999999999999999999999999999999999987665 8889


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL  353 (394)
Q Consensus       292 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  353 (394)
                      ..|.||||+|+..|+.+++++|+++|++       ++.+|..|+||||+|+++|+.++|++|
T Consensus       154 ~~g~TpL~~A~~~g~~~~v~~Ll~~gad-------~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         154 DKDETPLFLAAREGSYEASKALLDNFAN-------REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccchhccccHHHHHHHHHHCCCC-------CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999       999999999999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=214.38  Aligned_cols=183  Identities=22%  Similarity=0.285  Sum_probs=158.0

Q ss_pred             CCCcHHHHHHHcCCHHHHH----HHHHhC-CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHH
Q 040887          194 EDKSPLSLAIEMGNTDVLE----YILRSL-PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC  268 (394)
Q Consensus       194 ~~~~~l~~a~~~~~~~~~~----~ll~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~  268 (394)
                      +|.||||+|+..|+.+++.    ++...+ ..+..+..|.||||+|+..++.+++++|++.|++++.++..|.+||+.++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999965554    444433 34677889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHhcCCC-----CccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC-CCCCcHHHHHH
Q 040887          269 KNGHANVMVELLKEWRCP-----SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD-EDGNTPLHLAA  342 (394)
Q Consensus       269 ~~~~~~~v~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~g~t~L~~A~  342 (394)
                      ..++.++++.|+..+...     .......|.||||.|+..++.+.+++|++.|+.       ++..+ .+|+||||+|+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~-------~~~~~~~~G~T~L~~A~  153 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-------VNAQEPCNGRTALHLAV  153 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-------TTCCCTTTCCCHHHHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcc-------cccccccCCCCcccccc
Confidence            999999999999865332     233445689999999999999999999999988       66554 67999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          343 LHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       343 ~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      +.|+.+++++|+++| +|++.+|.+|+||||+|++.++.+..
T Consensus       154 ~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         154 DLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             ccccHHHHHHHHhcC-CcccccCCCCCCHHHHHHHCCCHHHH
Confidence            999999999999999 99999999999999999999876654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=3.9e-30  Score=205.77  Aligned_cols=201  Identities=19%  Similarity=0.232  Sum_probs=177.9

Q ss_pred             HHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcC-cc
Q 040887          175 AIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNG-YS  252 (394)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g-~~  252 (394)
                      +++++|+++|++++...|.+|.||||+|+..|+.+++++|++.+.. +..+..+.++++.++..+............ ..
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN   82 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999866788999999999999999999999997654 677788999999999999886555555443 33


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC
Q 040887          253 ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE  332 (394)
Q Consensus       253 ~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  332 (394)
                      .......+.++.+.+.........+.|...+... +.++..|.|||++++..+..++++.+++.+.+       ++.+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-------~~~~d~  154 (209)
T d1ot8a_          83 LNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN-------RDAQDD  154 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCT
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc-------cccccc
Confidence            3445567788999998899999988888876554 78899999999999999999999999999998       899999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887          333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS  384 (394)
Q Consensus       333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~  384 (394)
                      .|.||||+|+..|+.+++++|+++| +|++.+|..|+||||+|+++|+.+..
T Consensus       155 ~g~TpL~~A~~~g~~~~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASKALLDNF-ANREITDHMDRLPRDVASERLHHDIV  205 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccchhccccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999999999999999 99999999999999999999997655

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.97  E-value=1.9e-32  Score=235.08  Aligned_cols=237  Identities=17%  Similarity=0.077  Sum_probs=149.2

Q ss_pred             hhHhhhcCCCCchHHHHHHhcCCHHHHHH---HHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCC
Q 040887           32 HHIFEKVLTDGSSLLHVAAKSGHGEITAK---IAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQA  108 (394)
Q Consensus        32 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  108 (394)
                      ...+..++..|.||||+||+.|+.+++++   |++.+ .+++.++..|+||||+||..|+.++|++|++.|++++     
T Consensus        80 ~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~-~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~-----  153 (346)
T d2ajaa1          80 WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD-EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI-----  153 (346)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC-SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH-----
T ss_pred             hhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC-CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-----
Confidence            34557788999999999999999888776   56664 5899999999999999999999999999999998862     


Q ss_pred             cchhhhhhh--hcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCC
Q 040887          109 PVDLLRMEN--AMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPK  186 (394)
Q Consensus       109 ~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  186 (394)
                            ..+  ..|.                                                                 
T Consensus       154 ------~~~~~~~g~-----------------------------------------------------------------  162 (346)
T d2ajaa1         154 ------MAMIQAENY-----------------------------------------------------------------  162 (346)
T ss_dssp             ------HHHHSHHHH-----------------------------------------------------------------
T ss_pred             ------ccccccCCC-----------------------------------------------------------------
Confidence                  222  2344                                                                 


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC----CCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccC-----
Q 040887          187 LSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSG----ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN-----  257 (394)
Q Consensus       187 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~----~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~-----  257 (394)
                                ||||+|+..|+.+++++|++.++..    .....+.+|++.|+.+|+.+++++|++.|++++..+     
T Consensus       163 ----------t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~  232 (346)
T d2ajaa1         163 ----------HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE  232 (346)
T ss_dssp             ----------HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTT
T ss_pred             ----------ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHH
Confidence                      5555555555555555555443221    111223445555555666666666666555544321     


Q ss_pred             --CCCCcHHHHHHHcCCHHHHHHHHHhcCCC-Ccccc-------CCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhc
Q 040887          258 --KETLYPIHLACKNGHANVMVELLKEWRCP-SLFVT-------DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVV  327 (394)
Q Consensus       258 --~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~-~~~~~-------~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  327 (394)
                        ..+.++++.++..+..+....+....... ....+       ..+.++++.|+..+..+++++|++.+.......  .
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~--~  310 (346)
T d2ajaa1         233 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP--T  310 (346)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSS--C
T ss_pred             cCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcc--c
Confidence              11223444443333333322222111110 01111       123578889999999999999999887631111  3


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          328 NKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       328 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      +..+.+|+||||+|++.|+.++|++||+.+
T Consensus       311 ~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         311 ATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             CSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence            345568999999999999999999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-29  Score=201.45  Aligned_cols=220  Identities=17%  Similarity=0.143  Sum_probs=168.8

Q ss_pred             CCHHHHHHHHhccchhhhhcc----CCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHH
Q 040887            5 LDPAYFEAAIRGNIDDFLFSD----IPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPL   80 (394)
Q Consensus         5 ~~~~l~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   80 (394)
                      -+||||.||..|+.+.++.+.    ..+.++    +.+|.+|+||||+||..|+.+++++|+++++ +++..+..|.+++
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i----n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga-~~~~~~~~~~~~~   77 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL----DIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-SPMALDRHGQTAA   77 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS----CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CccCCCCCccceehhcccccccccccccccc-ccccccccccccc
Confidence            489999999999999998832    233333    5689999999999999999999999999966 6888999999999


Q ss_pred             HHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccc
Q 040887           81 HCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA  160 (394)
Q Consensus        81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (394)
                      +.|+..++.++++.+..........                                                       
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  102 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLD-------------------------------------------------------  102 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCC-------------------------------------------------------
T ss_pred             ccccccccccchhhhhhcccccccc-------------------------------------------------------
Confidence            9999999999999888763321100                                                       


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCH
Q 040887          161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNL  240 (394)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~  240 (394)
                                                 .........++++.+.........+.+...                       
T Consensus       103 ---------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-----------------------  132 (228)
T d1k1aa_         103 ---------------------------LEARNYDGLTALHVAVNTECQETVQLLLER-----------------------  132 (228)
T ss_dssp             ---------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------------------
T ss_pred             ---------------------------ccccccccccccccccccccchhhhhhhcc-----------------------
Confidence                                       001222345666666665555555555443                       


Q ss_pred             HHHHHHHhcCcc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 040887          241 GVCYLLEVNGYS-ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGT  319 (394)
Q Consensus       241 ~~~~~L~~~g~~-~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  319 (394)
                               ..+ .......+.+|++.|+..+...+++.+++.+... +.++..|.||||+|+..|+.+++++|+++|++
T Consensus       133 ---------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad  202 (228)
T d1k1aa_         133 ---------GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD  202 (228)
T ss_dssp             ---------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ---------ccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCC
Confidence                     221 2234456778888888888888888888876554 77788889999999999999999999999988


Q ss_pred             CCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887          320 NMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY  351 (394)
Q Consensus       320 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  351 (394)
                             ++.+|.+|+||||+|+++|+.+++|
T Consensus       203 -------~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         203 -------SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             -------TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             -------CCCCCCCCCCHHHHHHhCCCccccC
Confidence                   8888999999999999888888875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-27  Score=178.90  Aligned_cols=153  Identities=25%  Similarity=0.315  Sum_probs=107.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHH
Q 040887          197 SPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANV  275 (394)
Q Consensus       197 ~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~  275 (394)
                      +|||+|+..|+.+++++|++.+.+ +..+..|.||||+|+ .++.+++++|++.|++++..+..+.+|++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            577777777777777777765433 555666777777664 566777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040887          276 MVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR  355 (394)
Q Consensus       276 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  355 (394)
                      +..|++.+... +..+..|.+|+|+|+..++.+++++|+++++.+      ++.+|..|+||||+|+..++.+++++|++
T Consensus        82 ~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~------~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_          82 LQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccc------ccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            77777665544 566677777777777777777777777776633      66677777777777777777777777777


Q ss_pred             cC
Q 040887          356 YG  357 (394)
Q Consensus       356 ~g  357 (394)
                      +|
T Consensus       155 ~G  156 (156)
T d1ihba_         155 NG  156 (156)
T ss_dssp             TC
T ss_pred             cC
Confidence            65

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5.9e-27  Score=177.18  Aligned_cols=145  Identities=27%  Similarity=0.302  Sum_probs=105.0

Q ss_pred             ChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHH
Q 040887          229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD  308 (394)
Q Consensus       229 ~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  308 (394)
                      |||+.|++.|+.+++++|++.|++++ .+..|.||||+|+..++.+++..++...... ...+..+.++++.++...+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccc-cccccccccccccccccccce
Confidence            66777777777777777777777665 5667777777777777777777776665554 445556667777777777777


Q ss_pred             HHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcch
Q 040887          309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT  383 (394)
Q Consensus       309 ~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~  383 (394)
                      ++++++..+.+       .+.++.+|+||||+|+..|+.+++++|+++| +|++.+|.+|.|||++|+.+|+.+.
T Consensus        82 ~~~~l~~~~~~-------~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_          82 IVEVLLKHGAD-------VNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HHHHHHTTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             eeecccccCCc-------cccccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCCHHH
Confidence            77777777776       6677777777777777777777777777777 7777777777777777777777654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.5e-26  Score=174.98  Aligned_cols=149  Identities=22%  Similarity=0.254  Sum_probs=141.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHH
Q 040887          197 SPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVM  276 (394)
Q Consensus       197 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v  276 (394)
                      |||+.|++.|+.+++++|++.++....+..|.||||+|+..++.+++..+.............+.++++.++.....+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV   83 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcccccCCCccccccccccccccccccccccccccccccccccccccccccccceee
Confidence            89999999999999999999998877889999999999999999999999999888888888899999999999999999


Q ss_pred             HHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887          277 VELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL  353 (394)
Q Consensus       277 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  353 (394)
                      ++++..+... ..++..|.||||+|+..|+.+++++|++.|++       ++.+|.+|.||||+|+.+|+.+++++|
T Consensus        84 ~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-------~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          84 EVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccC-------CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999887665 78899999999999999999999999999999       999999999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=174.23  Aligned_cols=150  Identities=23%  Similarity=0.256  Sum_probs=134.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhC--CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHH
Q 040887          197 SPLSLAIEMGNTDVLEYILRSL--PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHAN  274 (394)
Q Consensus       197 ~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~  274 (394)
                      ..|+.|+..|+.++|+.|++..  ..+..+..|.||||+|+. ++.++++.|++.+.+++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            4689999999999999999854  445677889999998874 7788899999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887          275 VMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL  354 (394)
Q Consensus       275 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  354 (394)
                      +++++++.+.+. +.++..|.||||+|+..|+.+++++|+ .|++       ++.+|.+|+||||+|+..|+.+++++|+
T Consensus        83 ~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          83 TLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD-------LHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-------TTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             cccccccccccc-ccccCCCCeeecccccccccccccccc-cccc-------ccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999987665 778999999999999999999999888 5777       8999999999999999999999999999


Q ss_pred             hc
Q 040887          355 RY  356 (394)
Q Consensus       355 ~~  356 (394)
                      ++
T Consensus       154 ~h  155 (156)
T d1bd8a_         154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            75

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=176.28  Aligned_cols=150  Identities=27%  Similarity=0.285  Sum_probs=140.6

Q ss_pred             ChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHH
Q 040887          229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD  308 (394)
Q Consensus       229 ~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  308 (394)
                      ++||.|+..|+.++++.|++.|++++.++..|.||||+|+ .|+.+++++|++.+.+. +..+..|.++++.++..+..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccccc
Confidence            7999999999999999999999999999999999999875 78999999999987765 888999999999999999999


Q ss_pred             HHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887          309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE  387 (394)
Q Consensus       309 ~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~  387 (394)
                      .++.|++.+..       ++..+..|.+|||+|+..++.+++++|+++++.+++.+|..|.||||+|++.++.+.....
T Consensus        81 ~~~~l~~~~~~-------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          81 TLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccc-------ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999998       8999999999999999999999999999999679999999999999999999987765433

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=2.7e-28  Score=209.14  Aligned_cols=232  Identities=15%  Similarity=0.097  Sum_probs=150.3

Q ss_pred             CHHHHHHHHhccchhhhh---ccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCccccc--CCCCCHH
Q 040887            6 DPAYFEAAIRGNIDDFLF---SDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTN--NQGDTPL   80 (394)
Q Consensus         6 ~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~--~~g~t~L   80 (394)
                      .|+|+.||.+|+.+.+++   +...+.++    +.+|.+|+||||+||+.|+.++|++|++.|+ +++..+  ..|+|||
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i----n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~-~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIV----KVIQAENYQAFRLAAENGHLHVLNRLCELAP-TEIMAMIQAENYHAF  165 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSC----C--CHHHHHHHHHHHHTTCHHHHHHHHHSCT-TTHHHHHSHHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcc----cccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CccccccccCCCChh
Confidence            689999999999888776   44555554    6789999999999999999999999999976 566655  4699999


Q ss_pred             HHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccc
Q 040887           81 HCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA  160 (394)
Q Consensus        81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (394)
                      |+|+..|+.++|++|++.|++..        .....+..+.||++.|+..+                  +          
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~--------~~~~~~~~~~t~l~~A~~~g------------------~----------  209 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEA--------TAMIQAENYYAFRWAAVGRG------------------H----------  209 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGH--------HHHHHHHHHHHHHHHHSTTC------------------C----------
T ss_pred             HHHHHHhhHHHHHHHHHcCCccc--------ccccccCCCcchhhHHhhcC------------------H----------
Confidence            99999999999999999977531        12333444555555555443                  1          


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCH
Q 040887          161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNL  240 (394)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~  240 (394)
                                   .+++++|++.|.++.        ++.+.+...++..+..+++                  +...+..
T Consensus       210 -------------~~iv~~Ll~~ga~~~--------~~~~~~~~~~~~~~~~~~~------------------~~~~~~~  250 (346)
T d2ajaa1         210 -------------HNVINFLLDCPVMLA--------YAEIHEFEYGEKYVNPFIA------------------RHVNRLK  250 (346)
T ss_dssp             -------------HHHHHHHTTSHHHHH--------HHHHCTTTTTTTTHHHHHH------------------HHHHHHH
T ss_pred             -------------HHHHHHHHhCCCCcc--------hHHHHHHHcCcHhhhHHHH------------------Hhhccch
Confidence                         266666666554432        2223333333322222222                  2222222


Q ss_pred             HHHHHHHhcCcc--cccc-------CCCCCcHHHHHHHcCCHHHHHHHHHhcCCC----CccccCCCchHHHHHHHcCCH
Q 040887          241 GVCYLLEVNGYS--ALKK-------NKETLYPIHLACKNGHANVMVELLKEWRCP----SLFVTDNGCNILHFAAKNGHA  307 (394)
Q Consensus       241 ~~~~~L~~~g~~--~~~~-------~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~  307 (394)
                      +....+.....+  .+..       ...+.++++.++..+..+++++|++.+...    ....+.+|+||||+|++.|+.
T Consensus       251 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~  330 (346)
T d2ajaa1         251 EMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ  330 (346)
T ss_dssp             HHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT
T ss_pred             HHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcH
Confidence            211111111110  0000       111236788888899999999999865432    233456789999999999999


Q ss_pred             HHHHHHHhCC
Q 040887          308 DMVKAIIEIP  317 (394)
Q Consensus       308 ~~~~~Ll~~~  317 (394)
                      +++++|++.+
T Consensus       331 e~v~lLL~~p  340 (346)
T d2ajaa1         331 GACALLLSIP  340 (346)
T ss_dssp             THHHHHTTSH
T ss_pred             HHHHHHhCCC
Confidence            9999999753

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-26  Score=173.94  Aligned_cols=146  Identities=25%  Similarity=0.277  Sum_probs=133.5

Q ss_pred             ChHHHHHhcCCHHHHHHHHh-cCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCH
Q 040887          229 SPLQVATKKRNLGVCYLLEV-NGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA  307 (394)
Q Consensus       229 ~~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  307 (394)
                      ..|+.|+..|+.+.++.|+. .+.+++.++..|.||||+|+ .++.+++++|++.+.+. +..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            46999999999988888776 58899999999999999886 58899999999987765 77888999999999999999


Q ss_pred             HHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887          308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI  385 (394)
Q Consensus       308 ~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~  385 (394)
                      ++++++++.|++       ++.+|..|+||||+|+..|+.+++++|+ .| ++++.+|.+|+||||+|++.|+.+...
T Consensus        82 ~~~~~~l~~~~~-------~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~  150 (156)
T d1bd8a_          82 DTLKVLVEHGAD-------VNVPDGTGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHHHHHHTTCC-------SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             cccccccccccc-------cccccCCCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999998       8999999999999999999999999887 56 899999999999999999999977553

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.1e-26  Score=166.10  Aligned_cols=108  Identities=24%  Similarity=0.296  Sum_probs=100.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHH
Q 040887          261 LYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHL  340 (394)
Q Consensus       261 ~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~  340 (394)
                      .|||++|++.|+.+++++|++.+.+. +.++..|+||||+|+..|+.+++++|++.|++       ++.+|..|+||||+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-------in~~d~~g~tpLh~   74 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-------INAPDKHHITPLLS   74 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-------TTCCSSSCSCHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce-------eeecccccccchhh
Confidence            47999999999999999999987665 88899999999999999999999999999998       99999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHh
Q 040887          341 AALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR  377 (394)
Q Consensus       341 A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~  377 (394)
                      |+.+|+.+++++|+++| +|++.+|.+|.||||+|..
T Consensus        75 A~~~~~~~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          75 AVYEGHVSCVKLLLSKG-ADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHTTTCCHHHHHHHTTC-CCSSSSSSSTCCCCCTCSS
T ss_pred             hhhcCchhhhhhhhccc-ccceeeCCCCCCHHHHHhH
Confidence            99999999999999999 9999999999999999843

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.2e-26  Score=191.50  Aligned_cols=182  Identities=20%  Similarity=0.202  Sum_probs=126.2

Q ss_pred             hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCH-------HHHHHHHhcCccc
Q 040887          182 SLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNL-------GVCYLLEVNGYSA  253 (394)
Q Consensus       182 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~-------~~~~~L~~~g~~~  253 (394)
                      ..+.+++...|..|+||||+|+..|+.+++++|++.+.. +..+..|.||||.|+..++.       +++.++.   ...
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~  170 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCL  170 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGG
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhh
Confidence            345566655588899999999999999999999987654 66778899999999986642       3444443   345


Q ss_pred             cccCCCCCcHHHHHHHcCCH----H--------HHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHH-----HHhC
Q 040887          254 LKKNKETLYPIHLACKNGHA----N--------VMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKA-----IIEI  316 (394)
Q Consensus       254 ~~~~~~g~~~l~~a~~~~~~----~--------~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~-----Ll~~  316 (394)
                      ..++..|+||||.++..+..    .        ++.++++............+.++++.+........++.     ++..
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            66788899999988765442    2        34455565555545555566666666555443333332     2222


Q ss_pred             CCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHH
Q 040887          317 PGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL  376 (394)
Q Consensus       317 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~  376 (394)
                      .         +|.+|.+|+||||+|++.|+.+++++|+++| ||++++|..|+|||+||+
T Consensus       251 ~---------in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 M---------LNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             T---------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             C---------ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            2         7899999999999999999999999999999 999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-25  Score=162.42  Aligned_cols=121  Identities=22%  Similarity=0.174  Sum_probs=110.9

Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCc-hHHHHHHHc
Q 040887          226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGC-NILHFAAKN  304 (394)
Q Consensus       226 ~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~  304 (394)
                      .+.++||.|+..|+.+++++|++.|++++.++..|.||+|.| ..|+.+++++|++.+.+. +..+..+. ||||+|++.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc-cccccccccccccccccc-cccccccccccccccccc
Confidence            356899999999999999999999999999999999999976 479999999999988776 66777665 699999999


Q ss_pred             CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040887          305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR  355 (394)
Q Consensus       305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  355 (394)
                      |+.+++++|+++|++       ++.+|..|+||||+|+++|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~-------~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR-------LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCC-------SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc-------cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999       99999999999999999999999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=4e-26  Score=163.21  Aligned_cols=107  Identities=19%  Similarity=0.125  Sum_probs=101.7

Q ss_pred             CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCH
Q 040887          228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA  307 (394)
Q Consensus       228 ~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  307 (394)
                      .|||++|++.|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+.+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCch
Confidence            47999999999999999999999999999999999999999999999999999987765 88999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHH
Q 040887          308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA  342 (394)
Q Consensus       308 ~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~  342 (394)
                      +++++|+++|++       ++.+|.+|+||||+|.
T Consensus        82 ~~v~~Ll~~Gad-------~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSKGAD-------KTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTTCCC-------SSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhccccc-------ceeeCCCCCCHHHHHh
Confidence            999999999999       9999999999999983

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.1e-24  Score=181.55  Aligned_cols=79  Identities=20%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcH-------HHHHHHHhhccCCCCCCCCcc
Q 040887           38 VLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKL-------NTATALVDFAKHIPSTSQAPV  110 (394)
Q Consensus        38 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~ga~~~~~~~~~~  110 (394)
                      .|.+|+||||+||..|+.++|++|++.|+ +++.+|..|+||||.||..++.       +++++|...            
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~------------  169 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGS-NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC------------  169 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG------------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh------------
Confidence            48899999999999999999999999975 8999999999999999987752       455555433            


Q ss_pred             hhhhhhhhcCCcHHHHHHHHh
Q 040887          111 DLLRMENAMGNTALHEALFML  131 (394)
Q Consensus       111 ~~~~~~~~~~~t~l~~a~~~~  131 (394)
                        +...|..|+||||.++...
T Consensus       170 --~~~~d~~g~t~lh~~~~~~  188 (301)
T d1sw6a_         170 --LILEDSMNRTILHHIIITS  188 (301)
T ss_dssp             --GGEECTTCCCHHHHHHHHH
T ss_pred             --hhhcccccCCHHHHHHHHh
Confidence              3556788999999998766

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=157.28  Aligned_cols=116  Identities=18%  Similarity=0.143  Sum_probs=106.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC-cHH
Q 040887          260 TLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN-TPL  338 (394)
Q Consensus       260 g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~-t~L  338 (394)
                      +.++||+|+..|+.+++++|++++.++ +.++..|.||+|+|+ .|+.+++++|+++|++       ++.++..|. |||
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-------~~~~~~~~~~~~L   73 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-------PNCADPATLTRPV   73 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-------CCCCCTTTCCCHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccc-------ccccccccccccc
Confidence            457999999999999999999987655 889999999999775 7999999999999999       899888876 699


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887          339 HLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI  385 (394)
Q Consensus       339 ~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~  385 (394)
                      |+|++.|+.+++++|+++| ++++.+|..|+||||+|++.|+.+...
T Consensus        74 ~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~G~T~l~~A~~~g~~~~v~  119 (125)
T d1bi7b_          74 HDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVAR  119 (125)
T ss_dssp             HHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccccccccccccccccccc-cccccccCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999 999999999999999999999877653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-24  Score=155.01  Aligned_cols=121  Identities=18%  Similarity=0.114  Sum_probs=108.1

Q ss_pred             ChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHH
Q 040887          229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD  308 (394)
Q Consensus       229 ~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  308 (394)
                      ++|+.|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.+.+. +..|.+|+||||+|+.+|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHHH
Confidence            5788999999999999999999999999999999999999999999999999987665 889999999999999999999


Q ss_pred             HHHHHHhCCCCCCcchhhccccCC-CCCcHHHHH--HHcCCHHHHHHHHhcC
Q 040887          309 MVKAIIEIPGTNMTMDEVVNKMDE-DGNTPLHLA--ALHGHSQVVYALLRYG  357 (394)
Q Consensus       309 ~~~~Ll~~~~~~~~~~~~~~~~~~-~g~t~L~~A--~~~~~~~~~~~Ll~~g  357 (394)
                      ++++|+++|++       ++.++. .|+||++++  ...|+.+++++|+..+
T Consensus        82 ~v~~Ll~~ga~-------v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          82 VCKFLVESGAA-------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHTTCC-------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHcCCC-------cccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999998       887664 578887655  5778899999998764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.6e-24  Score=153.48  Aligned_cols=114  Identities=29%  Similarity=0.318  Sum_probs=103.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHH
Q 040887          262 YPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA  341 (394)
Q Consensus       262 ~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A  341 (394)
                      ++|+.|+..|+.+++++|++++.+. +.+|..|+||||+|+..++.+++++|++.|++       ++.+|.+|+||||+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-------~~~~d~~g~tpLh~A   74 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-------VNAADSDGWTPLHCA   74 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-------TTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccc-------cccccccCccccccc
Confidence            5799999999999999999987765 89999999999999999999999999999999       999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCccc-CCCcHHHHH--Hhhhhcchh
Q 040887          342 ALHGHSQVVYALLRYGRSNPDLKNK-QGMTAYKMA--LREYYMQTS  384 (394)
Q Consensus       342 ~~~~~~~~~~~Ll~~g~ad~~~~~~-~g~t~l~~a--~~~~~~~~~  384 (394)
                      +.+|+.+++++|+++| ++++..+. .|.||++++  .+.|+.+..
T Consensus        75 ~~~g~~~~v~~Ll~~g-a~v~~~~~~~~~~~~~~~~a~~~g~~eiv  119 (130)
T d1ycsb1          75 ASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCS  119 (130)
T ss_dssp             HHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             chhhHHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHHcChHHHH
Confidence            9999999999999999 99998765 588888776  455666554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.2e-22  Score=151.23  Aligned_cols=119  Identities=20%  Similarity=0.222  Sum_probs=100.7

Q ss_pred             HHHHHhcCCHHHHHHHHhcCcccccc------CCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCCccccCCCchHHHHH
Q 040887          231 LQVATKKRNLGVCYLLEVNGYSALKK------NKETLYPIHLACKN---GHANVMVELLKEWRCPSLFVTDNGCNILHFA  301 (394)
Q Consensus       231 l~~a~~~~~~~~~~~L~~~g~~~~~~------~~~g~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  301 (394)
                      |..|++.+....+..+...|.+++..      +..|+||||+|++.   +..+++++|++.+.+. +.+|..|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccccc
Confidence            44566666666666666666665543      66789999999974   6789999999987765 88999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887          302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG  357 (394)
Q Consensus       302 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  357 (394)
                      +..|+.+++++|+++|++       ++.+|..|+||||+|++.|+.+++++|++.+
T Consensus        89 ~~~~~~~~v~~Ll~~gad-------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKAS-------IEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccccCcc-------ccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999999       8999999999999999999999999999987

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.7e-22  Score=148.02  Aligned_cols=117  Identities=18%  Similarity=0.199  Sum_probs=102.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCC-----ccccCCCchHHHHHHHc---CCHHHHHHHHhCCCCCCcchhhccccCCCC
Q 040887          263 PIHLACKNGHANVMVELLKEWRCPS-----LFVTDNGCNILHFAAKN---GHADMVKAIIEIPGTNMTMDEVVNKMDEDG  334 (394)
Q Consensus       263 ~l~~a~~~~~~~~v~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g  334 (394)
                      .|..|++.+....+..++..+.+..     ...+..|+||||+|++.   +..+++++|+++|++       ++.+|.+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-------in~~d~~g   81 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-------LDKQTGKG   81 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-------TTCCCTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-------hhhhhhhh
Confidence            4567788999999888888765432     22366799999999985   678999999999999       99999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887          335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE  387 (394)
Q Consensus       335 ~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~  387 (394)
                      +||||+|+..|+.+++++|+++| ++++.+|..|+||||+|++.|+.+.....
T Consensus        82 ~TpLh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~i~~~L  133 (154)
T d1dcqa1          82 STALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELL  133 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccccccccccC-ccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999 99999999999999999999987775443