Citrus Sinensis ID: 040920

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGIR
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEcccccccccccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEccccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
masssssinmiphikydvflsfrgkdvrHNFISHLNAALCRKKIETFIDDklnrgneispslssaiegskISIVIFSKGYASSRLCLNELVKILEsknkygqivvpvfylvdpsdvrnqtgtfgdsFSKLEERFKEKIDMLQTWRIAMREAanlsgfdshgir
Flexible Loop (DISEMBL)
masssssinmiphIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDdklnrgneispslssaiegsKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMReaanlsgfdshgir
Low Complexity Region (SEG)
MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGIR
Disordered region (IsUnstruct)
********NMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRG*********AIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMRE*************
Disordered Region (DISOPRED)
***************YDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEER*****DMLQTWRIAMREAANLSGFDSHGIR
Disordered Region (DISEMBL)
********NMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGIR
Disordered Region (DISPRO)
***********PHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.865	0.123	0.542	4e-38
O82500	1095	Putative disease resistan	no	no	0.914	0.136	0.5	1e-32
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.858	0.107	0.510	2e-31
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.834	0.330	0.416	9e-24
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.895	0.372	0.432	1e-23
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.938	0.432	0.374	2e-22
Q9SYC9	571	Vesicle-associated protei	no	no	0.895	0.255	0.346	3e-19
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.717	0.061	0.291	6e-08
Q9FL92	1372	Probable WRKY transcripti	no	no	0.662	0.078	0.327	7e-07
Q9FHE5	332	Uncharacterized protein P	no	no	0.711	0.349	0.318	0.0005

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 99/142 (69%), Gaps = 1/142 (0%)

Query: 16  YDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIV 74
           YDVFLSFRG+D R  F SHL   L  K I+TF DDK L  G  I   L  AIE S+ +IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 75  IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           +FS+ YA+SR CLNELVKI+E K ++ Q V+P+FY VDPS VRNQ  +F  +F + E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 135 KEKIDMLQTWRIAMREAANLSG 156
           K+ ++ +Q WRIA+ EAANL G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 102/156 (65%), Gaps = 7/156 (4%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
           MASSSS+       +YDVF SFRG+DVR+NF+SHL      K I TF DD + R + I  
Sbjct: 1   MASSSSN-----SWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGH 55

Query: 61  SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L +AI  SKIS+V+FS+ YASS  CL+EL++I++ K + G  V+PVFY VDPSD+R QT
Sbjct: 56  ELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSG 156
           G FG SF  LE    +  +    WR A+ +AAN+ G
Sbjct: 116 GKFGMSF--LETCCGKTEERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 97/145 (66%), Gaps = 5/145 (3%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIV 74
           +YDVF SFRG+DVR +F+SHL   L R K  TFIDD++ R   I P L SAI+ S+I+IV
Sbjct: 11  RYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSAIKESRIAIV 69

Query: 75  IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           IFSK YASS  CLNELV+I +      Q+V+P+F+ VD S+V+ QTG FG  F   EE  
Sbjct: 70  IFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF---EETC 126

Query: 135 KEKI-DMLQTWRIAMREAANLSGFD 158
           K K  D  Q+W+ A+   A ++G+D
Sbjct: 127 KAKSEDEKQSWKQALAAVAVMAGYD 151

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  109 bits (272), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 86/137 (62%), Gaps = 1/137 (0%)

Query: 18  VFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFS 77
           VF++FRGKD+R  F+S L  AL ++KI  FID++  RG  +  SL   I  SKI++VIFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 78  KGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEK 137
           +GY  S  C++ELVKI E  ++   I++P+FY +D   V++ TG FGD+F  L ++++ +
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142

Query: 138 IDMLQTWRIAMREAANL 154
              L  W  A+     L
Sbjct: 143 PKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 89/148 (60%), Gaps = 2/148 (1%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
           MASSSS +   P     VF+ FRG DVR +FIS L  AL    I  FID+    G+E++ 
Sbjct: 1   MASSSSVVKPTP-TGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA- 58

Query: 61  SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L + IE S++++VIFS  +  S  CLNEL KI E K++   IV+P+FY V PS V+   
Sbjct: 59  NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLE 118

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAM 148
           G FGD+F  LE   +  + + Q W+ A+
Sbjct: 119 GKFGDNFRALERNNRHMLPITQKWKEAL 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 3   SSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSL 62
           ++SSS+   P     VF++FRGKD+R+ F+S L  A+    I  FID     G ++  +L
Sbjct: 2   AASSSVRPTP-TGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV-NL 59

Query: 63  SSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGT 122
              I+ S++++VIFSK Y SS  CL+EL +I +  N+ G   +P+FY + PS V    G 
Sbjct: 60  FVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119

Query: 123 FGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGF 157
           FGD+F  L+E++K   +  Q W+ A+     L G 
Sbjct: 120 FGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 88/147 (59%), Gaps = 1/147 (0%)

Query: 2   ASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPS 61
           A+SS+  + I   +Y VF++FRG ++R++F+  L  A+  +KI  F D+   RG  ++  
Sbjct: 344 AASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-Y 402

Query: 62  LSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTG 121
           L   IE S++++ IFS+ Y  S  CL+ELVK+ E   +   +VVPVFY ++ +  +   G
Sbjct: 403 LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMG 462

Query: 122 TFGDSFSKLEERFKEKIDMLQTWRIAM 148
            FGD+   LE  ++ + + +Q W+ A+
Sbjct: 463 AFGDNLRNLEWEYRSEPERIQKWKEAL 489

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 27/144 (18%)

Query: 16  YDVFLSFRGKDV-RHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIV 74
           YDV + +   D+   +FISHL A+LCR+ I  +      + NE+      A+   ++ I+
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVY-----EKFNEV-----DALPKCRVLII 717

Query: 75  IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSD-VRNQTGTFGDSFSKLEER 133
           + +  Y  S      L+ ILE ++   ++V P+FY + P D V N         SK  ER
Sbjct: 718 VLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCN---------SKNYER 763

Query: 134 FKEKIDMLQTWRIAMREAANLSGF 157
           F  + D  + W+ A++E   + G+
Sbjct: 764 FYLQ-DEPKKWQAALKEITQMPGY 786

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 25  KDVRHNFISHLNAALCRKKI-ETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASS 83
           ++VR++F+SHL+ AL RK + + FID   +  NE      S +E +++S++I       S
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSDDSLSNESQ----SMVERARVSVMILPGNRTVS 69

Query: 84  RLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKID 139
              L++LVK+L+ +    Q+VVPV Y V  S+    +      FS +    KE  D
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSALDSKGFSSVHHSRKECSD 122

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana GN=PP2A7 PE=4 SV=1

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 22/138 (15%)

Query: 25  KDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSR 84
           +DV    I+ L   L  K I  FID++  RG  +  +L   I+ SKIS+ IFS+    S+
Sbjct: 51  EDVSKGLINFLEPVLQNKNINVFIDEEEVRGKGLK-NLFKRIQDSKISLAIFSE----SK 105

Query: 85  LCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTW 144
              N+L+K  ES ++     +P+FY VD       TG   D    L+   K K D++ + 
Sbjct: 106 CDFNDLLKNNESADE----AIPIFYKVD------ATGDLAD----LQNSVKCKKDLINS- 150

Query: 145 RIAMREAANLSGFDSHGI 162
             A+ E + L    S G+
Sbjct: 151 --AVEEMSKLLANISVGV 166

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.932	0.135	0.651	5e-51
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.957	0.108	0.621	2e-49
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.914	0.101	0.630	3e-49
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.957	0.124	0.633	4e-48
255564962	1091	TMV resistance protein N, putative [Rici	1.0	0.149	0.591	4e-48
223452603	257	TIR-NBS-LRR type disease resistance prot	0.963	0.610	0.563	4e-47
351725457	250	uncharacterized protein LOC100527494 [Gl	0.963	0.628	0.563	4e-47
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.963	0.100	0.606	2e-46
255555357	1094	leucine-rich repeat-containing protein,	0.914	0.136	0.630	3e-46
351724127	257	TIR-like [Glycine max] gi|225194548|gb|A	0.963	0.610	0.556	5e-46

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 119/152 (78%)

Query: 12  PHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKI 71
           P  KYDVFLSFRG+D R  F+SHL AAL RK+I TFID KLNRG EISPSL  AIE SK+
Sbjct: 11  PQEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKL 70

Query: 72  SIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLE 131
           S+V+FS  YASS+ CL EL KILE K   GQ+V+PVFY VDPS VRNQTG+F D+F++ +
Sbjct: 71  SVVVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHD 130

Query: 132 ERFKEKIDMLQTWRIAMREAANLSGFDSHGIR 163
           +  KEK++ +  WR AMREAANLSG+DSH I+
Sbjct: 131 QLLKEKMEKVLNWRAAMREAANLSGWDSHNIK 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/161 (62%), Positives = 125/161 (77%), Gaps = 5/161 (3%)

Query: 1   MASSSSSINMIPH-IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEIS 59
           MASSS+    + H  KYDVFLSFRGKD R+NF SHL  ALCRKKI+TFIDD+L RG EI+
Sbjct: 1   MASSSA----VAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEIT 56

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P+L   IE S+IS+VIFSK YASS  C++ELVKILE K  YGQIV+PVFY V+PSDV  Q
Sbjct: 57  PALLKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQ 116

Query: 120 TGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
           TG+FG++F++LE+ FK K+D +  WR  +  AA++SG+DS 
Sbjct: 117 TGSFGNAFAELEKNFKGKMDKVPRWRADLTNAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 117/149 (78%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIV 74
           KYDVFLSFRGKD R NF+SHL  ALCRK+I+TFIDDKL RG EI+ +L   IE S+IS++
Sbjct: 12  KYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRTIEESRISVI 71

Query: 75  IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           IFS+ YASS  C++ELVKILE K  YGQIV+PVFY VDPSDV  QTG+FG++F++LE  F
Sbjct: 72  IFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGNAFAELERNF 131

Query: 135 KEKIDMLQTWRIAMREAANLSGFDSHGIR 163
           K+K+D +  WR  +  AAN+SG+DS   R
Sbjct: 132 KQKMDKVPRWRADLTSAANISGWDSQVTR 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 122/161 (75%), Gaps = 5/161 (3%)

Query: 1   MASSSSSINMIPHI-KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEIS 59
           MASSSS    + H  KYDVFLSFRG+D R+NF SHL  ALCRKKI+TFIDD L RG EI+
Sbjct: 1   MASSSS----VAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEIT 56

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P+L   IE S+IS+VIFSK YASS  C++ELVKILE K   GQIV+PVFY VDPSDV  Q
Sbjct: 57  PALLKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQ 116

Query: 120 TGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
           TG+FG++FS+LE  FK K+D +  WR  M  AA++SG+DS 
Sbjct: 117 TGSFGNAFSELENIFKGKMDKVPRWRADMTYAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564962|ref|XP_002523474.1| TMV resistance protein N, putative [Ricinus communis] gi|223537302|gb|EEF38933.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 120/164 (73%), Gaps = 1/164 (0%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEIS 59
           M   +SS N+ P   YDVFLSFRG D RHN ISHL AAL RK + TFIDD  L+RG EIS
Sbjct: 1   MPPPTSSSNVPPKTSYDVFLSFRGADTRHNLISHLYAALSRKHVTTFIDDHGLDRGEEIS 60

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P+L  AIE SKIS++IFS+ YASS+ CL+ELVKI+E      + V+PVFY VDPSDVR Q
Sbjct: 61  PTLLKAIEESKISVIIFSENYASSKWCLDELVKIMECMKTMSRNVLPVFYHVDPSDVRKQ 120

Query: 120 TGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGIR 163
           TG+FG +F  ++E+FK  +D +Q W  A+ EAANLSG+DS+  R
Sbjct: 121 TGSFGQAFGVVKEKFKGSMDRVQRWSTALTEAANLSGWDSNNYR 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223452603|gb|ACM89628.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 123/158 (77%), Gaps = 1/158 (0%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
           MA S+SS +  PH K++VFLSFRG+D R+ F  HL+A+L R ++ T+ID  L RG EIS 
Sbjct: 1   MAWSTSS-SSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRLQVNTYIDYNLQRGEEISS 59

Query: 61  SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           SL  AIE +K+S+V+FSK Y +S+ CL+EL+KILE KN  GQIV+P+FY +DPS VRNQT
Sbjct: 60  SLLRAIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVLPIFYDIDPSHVRNQT 119

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFD 158
           GT+ ++F+K E+  + ++D +Q WR+A+REAANLSG+D
Sbjct: 120 GTYAEAFAKHEKHLQGQMDKVQKWRVALREAANLSGWD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725457|ref|NP_001236837.1| uncharacterized protein LOC100527494 [Glycine max] gi|255632476|gb|ACU16588.1| unknown [Glycine max]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 123/158 (77%), Gaps = 1/158 (0%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
           MA S+SS +  PH K++VFLSFRG+D R+ F  HL+A+L R ++ T+ID  L RG EIS 
Sbjct: 1   MAWSTSS-SSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRLQVNTYIDYNLQRGEEISS 59

Query: 61  SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           SL  AIE +K+S+V+FSK Y +S+ CL+EL+KILE KN  GQIV+P+FY +DPS VRNQT
Sbjct: 60  SLLRAIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVLPIFYDIDPSHVRNQT 119

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFD 158
           GT+ ++F+K E+  + ++D +Q WR+A+REAANLSG+D
Sbjct: 120 GTYTEAFAKHEKHLQGQMDKVQKWRVALREAANLSGWD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 121/160 (75%), Gaps = 3/160 (1%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
           MASSS+   +    KYDVFLSFRGKD R+NF SHL   L R+KI+TFIDD+L RG EI+P
Sbjct: 1   MASSSA---VARKWKYDVFLSFRGKDTRNNFTSHLCKDLRRQKIKTFIDDRLERGEEITP 57

Query: 61  SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L   IE S++SIVIFS+ YASS  CL+ELVKILE K  YGQIV+PVFY VDPSDV  QT
Sbjct: 58  ALLKTIEESRVSIVIFSENYASSPWCLDELVKILECKETYGQIVLPVFYHVDPSDVDEQT 117

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
           G+FG++FS+LE+ FK K+  +  WR  +  AA++SG+DS 
Sbjct: 118 GSFGNAFSELEKNFKGKMGKVPRWRADLTYAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 111/149 (74%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIV 74
           KYDVFLSFRG+D R+NF SHL+AAL  KKI TFIDD L RGNEISPSL  AIE SKIS+V
Sbjct: 22  KYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKISVV 81

Query: 75  IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           I S+ Y SS+ CL ELVKILE     GQ+V+PVFY VDPS VRNQTG+F D F++ EE  
Sbjct: 82  IISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEESL 141

Query: 135 KEKIDMLQTWRIAMREAANLSGFDSHGIR 163
               + +Q+WR A++E ANLSG+ S   R
Sbjct: 142 SVSKEKVQSWRAALKEVANLSGWHSTSTR 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724127|ref|NP_001236023.1| TIR-like [Glycine max] gi|225194548|gb|ACN81802.1| TIR-like protein [Glycine max]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 121/158 (76%), Gaps = 1/158 (0%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
           MA S+SS +  PH K++VFLSFRG+D R+ F  HL+A+L R ++ T+ID  L RG EIS 
Sbjct: 1   MAWSTSS-SSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRHQVNTYIDYNLQRGEEISS 59

Query: 61  SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           SL  AIE +K+S+V+FSK Y +S+ CL+EL+KILE KN  GQIV P+FY +DPS VRNQT
Sbjct: 60  SLLRAIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVWPIFYDIDPSHVRNQT 119

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFD 158
           GT+ ++F+K E+  + ++  +Q WR+A+REAANLSG+D
Sbjct: 120 GTYAEAFAKHEKHLQGQMVKVQKWRVALREAANLSGWD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.901	0.469	0.493	6.5e-35
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.932	0.132	0.535	8.2e-35
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.944	0.106	0.537	5.7e-32
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.901	0.123	0.469	3e-31
TAIR|locus:2100182	1007	AT3G44400 [Arabidopsis thalian	0.883	0.142	0.465	7.5e-31
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.901	0.118	0.463	8.4e-31
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.932	0.123	0.522	1.4e-30
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.865	0.118	0.524	1.7e-30
TAIR|locus:2170408	1139	AT5G46270 [Arabidopsis thalian	0.920	0.131	0.503	2e-30
TAIR|locus:2130245	1040	AT4G16900 [Arabidopsis thalian	0.932	0.146	0.506	2.1e-30

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 75/152 (49%), Positives = 105/152 (69%)

Query:     8 INMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIE 67
             +N  P +K+DVF+SFR KD R NF+SHL   L RK+I+TF+ D+L        SL  AIE
Sbjct:     1 MNSSPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLK-AIE 59

Query:    68 GSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSF 127
              SKIS+++FS+ +  SR CL+E+V IL+ K K+GQIV+PV Y VDP D+ NQTG+FGD+F
Sbjct:    60 VSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAF 119

Query:   128 SKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159
             +K     ++K + LQ W+ +  EA NL G+ +
Sbjct:   120 AKR----RDKAEQLQEWKDSFTEAINLPGWST 147

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 389 (142.0 bits), Expect = 8.2e-35, P = 8.2e-35
 Identities = 84/157 (53%), Positives = 106/157 (67%)

Query:     1 MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEIS 59
             MASSSSS        YDVFLSFRG+D R  F SHL   L  K I+TF DDK L  G  I 
Sbjct:     1 MASSSSSSRW----SYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIP 56

Query:    60 PSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
               L  AIE S+ +IV+FS+ YA+SR CLNELVKI+E K ++ Q V+P+FY VDPS VRNQ
Sbjct:    57 GELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQ 116

Query:   120 TGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSG 156
               +F  +F + E ++K+ ++ +Q WRIA+ EAANL G
Sbjct:   117 KESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 5.7e-32, P = 5.7e-32
 Identities = 86/160 (53%), Positives = 103/160 (64%)

Query:     1 MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
             MA+SSSS       +YDVF SF G DVR  F+SHL  AL  K I TFID  + R   I+P
Sbjct:     1 MAASSSSGRR----RYDVFPSFSGVDVRKTFLSHLIEALDGKSINTFIDHGIERSRTIAP 56

Query:    61 SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L SAI  ++ISIVIFSK YASS  CLNELV+I +  N  GQ+V+PVFY VDPS+VR QT
Sbjct:    57 ELISAIREARISIVIFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQT 116

Query:   121 GTFGDSFSKLEERFKEKI--DMLQTWRIAMREAANLSGFD 158
             G FG  F K  E  K+K   D  Q W  A+ + AN++G D
Sbjct:   117 GEFGKVFEKTCEVSKDKQPGDQKQRWVQALTDIANIAGED 156

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 3.0e-31, P = 3.0e-31
 Identities = 70/149 (46%), Positives = 101/149 (67%)

Query:    15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIV 74
             K+DVF SF G DVR  F+SH+  +  RK I+TFID+ + R   I P L  AI+GSKI+IV
Sbjct:    97 KHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIKGSKIAIV 156

Query:    75 IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
             + S+ YASS  CL+EL +I++ +   GQIV+ +FY VDP+D++ QTG FG +F+K   R 
Sbjct:   157 LLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVDPTDIKKQTGEFGKAFTKTC-RG 215

Query:   135 KEKIDMLQTWRIAMREAANLSGFDSHGIR 163
             K K + ++ WR A+ + A ++G+ SH  R
Sbjct:   216 KPK-EQVERWRKALEDVATIAGYHSHSWR 243

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 7.5e-31, P = 7.5e-31
 Identities = 68/146 (46%), Positives = 100/146 (68%)

Query:    15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIV 74
             K+DVF SF G DVR  F+SH+  +  RK I+TFID+ + R   I P L  AI+GSKI+IV
Sbjct:    47 KHDVFPSFHGADVRRTFLSHIKESFRRKGIDTFIDNNIERSKSIGPELKEAIKGSKIAIV 106

Query:    75 IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
             + S+ YASS  CL+EL +I++ +   GQIV+ +FY V+P+D++ QTG FG +F+K   R 
Sbjct:   107 LLSRKYASSSWCLDELAEIMKCREMVGQIVMTIFYEVEPTDIKKQTGEFGKAFTKTC-RG 165

Query:   135 KEKIDMLQTWRIAMREAANLSGFDSH 160
             K K + ++ WR A+ + A ++G+ SH
Sbjct:   166 KTK-EHIERWRKALEDVATIAGYHSH 190

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 8.4e-31, P = 8.4e-31
 Identities = 69/149 (46%), Positives = 101/149 (67%)

Query:    15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIV 74
             K+DVF SF G DVR  F+SH+  +  RK I+TFID+ + R   I P L  AI+GSKI+IV
Sbjct:    93 KHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIKGSKIAIV 152

Query:    75 IFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
             + S+ YASS  CL+EL +I++ +   GQIV+ +FY V+P+D++ QTG FG +F+K   R 
Sbjct:   153 LLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVEPTDIKKQTGEFGKAFTKTC-RG 211

Query:   135 KEKIDMLQTWRIAMREAANLSGFDSHGIR 163
             K K + ++ WR A+ + A ++G+ SH  R
Sbjct:   212 KPK-EQVERWRKALEDVATIAGYHSHSWR 239

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 83/159 (52%), Positives = 104/159 (65%)

Query:     1 MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
             MASSSS         YDVF SF G+DVR +F+SHL   L RK I TFID+ + R + I+P
Sbjct:     1 MASSSSR-----SWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAP 55

Query:    61 SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L SAI  S ISIV+FSK YASS  CLNELV+I +   +  QIV+P+FY VDPSDVR QT
Sbjct:    56 DLLSAINNSMISIVVFSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQT 115

Query:   121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159
               FG+ F K+    K + D+ Q W  A+ E A+++G DS
Sbjct:   116 REFGEFF-KVTCVGKTE-DVKQQWIEALEEVASIAGHDS 152

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 1.7e-30, P = 1.7e-30
 Identities = 76/145 (52%), Positives = 100/145 (68%)

Query:    16 YDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDD-KLNRGNEISPSLSSAIEGSKISIV 74
             YDVF+SFRG DVR NF+SHL  +L R  I TF+DD +L RG  ISP L +AIE SKI IV
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    75 IFSKGYASSRLCLNELVKILES-KNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEER 133
             + +K YASS  CL+ELV I++S KN    +V P+F  VDPSD+R Q G++  SFSK   +
Sbjct:    77 VLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSK--HK 134

Query:   134 FKEKIDMLQTWRIAMREAANLSGFD 158
                 ++ L+ WR A+ + AN+SG+D
Sbjct:   135 NSHPLNKLKDWREALTKVANISGWD 159

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170408 AT5G46270 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 2.0e-30, P = 2.0e-30
 Identities = 80/159 (50%), Positives = 103/159 (64%)

Query:     1 MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
             MASSSSS N +    YDVFLSFRG DVR  F SH    L RK I  F D+++ R + + P
Sbjct:    12 MASSSSSRNWL----YDVFLSFRGGDVRVTFRSHFLKELDRKLITAFRDNEIERSHSLWP 67

Query:    61 SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L  AI+ S+I++VIFSK YASS  CLNEL++I+   +K   IV+PVFY VDPS VR+Q 
Sbjct:    68 DLEQAIKDSRIAVVIFSKNYASSSWCLNELLEIVNCNDK---IVIPVFYGVDPSQVRHQI 124

Query:   121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159
             G FG  F K  +R  E++     W+ A+ + AN+ GFDS
Sbjct:   125 GDFGKIFEKTCKRQTEQVK--NQWKKALTDVANMLGFDS 161

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130245 AT4G16900 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 80/158 (50%), Positives = 103/158 (65%)

Query:     1 MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
             MA++SSS +     +YDVF SF G DVR  F+S+L  A  R+ I TF+D  + R   I+P
Sbjct:     1 MAAASSSCSR----RYDVFPSFSGVDVRKTFLSNLLEAFDRRSINTFMDHGIERSRTIAP 56

Query:    61 SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L SAI  ++ISIVIFSK YASS  CL+ELV+I    N +GQ+V+ VFY VDPS+VR QT
Sbjct:    57 ELISAIREARISIVIFSKNYASSTWCLDELVEIHNRLNDWGQLVISVFYDVDPSEVRKQT 116

Query:   121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFD 158
             G FGD F K  E  KE+ D  Q W  A+ +  N++G D
Sbjct:   117 GEFGDVFKKTCED-KEE-DQKQRWMQALVDITNIAGED 152

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-41
pfam01582	135	pfam01582, TIR, TIR domain	2e-40
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	3e-38
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	1e-14
pfam13676	102	pfam13676, TIR_2, TIR domain	3e-09

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  146 bits (370), Expect = 2e-41
 Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 6/159 (3%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISP 60
            +SSSSS N +    YDVF SF G+DVR  F+SH    L RK I  F D+++ R   + P
Sbjct: 2   ASSSSSSRNWV----YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDP 57

Query: 61  SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L  AI  S+I++V+FSK YASS  CLNEL++I+  K + GQ+V+PVFY +DPS VR QT
Sbjct: 58  ELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT 117

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159
           G FG++F K  +   E  D    W+ A+ + AN+ G+ S
Sbjct: 118 GDFGEAFEKTCQNKTE--DEKIQWKQALTDVANILGYHS 154

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  132 bits (334), Expect = 2e-40
 Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 3/135 (2%)

Query: 18  VFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIF 76
           VF+SF GKD R  F+SHL   L  K I+  IDD+    G  I  +L  AIE S+ +IVIF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 77  SKGYASSRLCLNELVKILESKNKYG--QIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           S  YASS  CL+ELV+I++   + G  ++++P+FY VDPSDVR Q+G FG +F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 135 KEKIDMLQTWRIAMR 149
            +K D ++ W+ A+ 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  127 bits (320), Expect = 3e-38
 Identities = 58/142 (40%), Positives = 82/142 (57%), Gaps = 4/142 (2%)

Query: 15  KYDVFLSFRGK-DVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISI 73
           +YDVF+S+ GK DVR+ F+SHL   L    +  FIDD    G ++   +  AIE S+I+I
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAI 59

Query: 74  VIFSKGYASSRLCLNELVKILESKNKYGQI-VVPVFYLVDPSDVRNQTGTFGDSFSKLEE 132
           V+ S  YA S  CL+ELV  LE+  + G + V+P+FY V PSDVR Q G F   F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 133 RFKEKIDMLQTWRIAMREAANL 154
           ++ E  +  Q W+ A+    + 
Sbjct: 120 KWPED-EKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 22/158 (13%)

Query: 5   SSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLS 63
           SSS +  P    DVF++ RG D +    + L   L R  +  F+D+K +  G+++   ++
Sbjct: 19  SSSSSAKPC---DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKIN 75

Query: 64  SAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTF 123
           SAI   K+ + +FS  Y  S  CL+EL  I+ESK +    V+P+F  V PS +R      
Sbjct: 76  SAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR------ 125

Query: 124 GDSFSKLEERFKEKIDMLQTWRIAMREAANLSG--FDS 159
                 + +      + ++ +  A+ EA    G  FDS
Sbjct: 126 ------VVDNGTCPDEEIRRFNWALEEAKYTVGLTFDS 157

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 18  VFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFS 77
           VF+S+   D    +   L  AL    I  ++D  +  G +    +  A+  + + +V+ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 78  KGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDV 116
             Y +S  C  E    LE     G+ ++PV   ++  ++
Sbjct: 59  PAYLASPWCRAEWGAALER----GKRLIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.94
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.79
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.22
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.72
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.01
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.17
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	95.23
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	93.04
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	92.89
COG4271	233	Predicted nucleotide-binding protein containing TI	91.98
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	83.98

>PLN03210 Resistant to P

Probab=100.00  E-value=6.8e-46  Score=349.79  Aligned_cols=158  Identities=47%  Similarity=0.754  Sum_probs=148.1

Q ss_pred             CCCCCCCCCCCCCceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCC
Q 040920            1 MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGY   80 (163)
Q Consensus         1 m~~~~~~~~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y   80 (163)
                      ||||||++   +.++|||||||||+|+|++|++||+.+|.++||.+|+|+++++|+.|.+++.+||++|+++|||||++|
T Consensus         1 ~~~~~~~~---~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y   77 (1153)
T PLN03210          1 MASSSSSS---RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY   77 (1153)
T ss_pred             CCCCCCCC---CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence            77776544   358999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCchhhHHHHHHHHHhhhhcCceeEeEEEecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 040920           81 ASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH  160 (163)
Q Consensus        81 ~~S~wC~~El~~~~~~~~~~~~~viPVfy~v~p~~v~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~  160 (163)
                      ++|.||++||++|++|.++++++|+||||+|+|+|||+|+|.||++|.+++++.  +.+++++||.||++||+++||++.
T Consensus        78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~  155 (1153)
T PLN03210         78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQ  155 (1153)
T ss_pred             ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecC
Confidence            999999999999999999999999999999999999999999999999988764  478999999999999999999987


Q ss_pred             CCC
Q 040920          161 GIR  163 (163)
Q Consensus       161 ~~~  163 (163)
                      +++
T Consensus       156 ~~~  158 (1153)
T PLN03210        156 NWP  158 (1153)
T ss_pred             CCC
Confidence            653

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=1.7e-45  Score=282.62  Aligned_cols=130  Identities=32%  Similarity=0.562  Sum_probs=121.3

Q ss_pred             ceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHH
Q 040920           14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVK   92 (163)
Q Consensus        14 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~   92 (163)
                      ..|||||||+|+|+|++|++||+.+|+++||++|+|+. +.+|+.|.+.|.+||++|+++|+|||++|++|.||++||++
T Consensus        25 ~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~  104 (187)
T PLN03194         25 KPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELAL  104 (187)
T ss_pred             CCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHH
Confidence            57999999999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCceeEeEEEecCCcccccc-cCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 040920           93 ILESKNKYGQIVVPVFYLVDPSDVRNQ-TGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH  160 (163)
Q Consensus        93 ~~~~~~~~~~~viPVfy~v~p~~v~~q-~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~  160 (163)
                      |+++.    ..||||||+|+|+|||+| .|.             .+.+++++||.||++|++++|+++.
T Consensus       105 I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194        105 IMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             HHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence            99873    489999999999999997 432             2368999999999999999999875

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.94  E-value=1.4e-26  Score=169.78  Aligned_cols=137  Identities=40%  Similarity=0.651  Sum_probs=115.7

Q ss_pred             eeeEEEeccc-cccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHH
Q 040920           15 KYDVFLSFRG-KDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKI   93 (163)
Q Consensus        15 ~ydVFISy~~-~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~   93 (163)
                      +|||||||++ ++....|+.+|...|...|+.+|.|+....|... .+|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            4899999998 3445689999999999999999998763333333 3999999999999999999999999999999999


Q ss_pred             HHhhhh-cCceeEeEEEecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhc
Q 040920           94 LESKNK-YGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAAN  153 (163)
Q Consensus        94 ~~~~~~-~~~~viPVfy~v~p~~v~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~  153 (163)
                      +++..+ +..+||||+++..|+++.++.+.++..+......+..+..+ +.|+.++..+.+
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            987654 67899999999999999999999999998776666543333 799999988764

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=2.4e-28  Score=180.88  Aligned_cols=132  Identities=36%  Similarity=0.526  Sum_probs=114.7

Q ss_pred             EEEeccccccccchHHHHHHHHhcC--CeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHH
Q 040920           18 VFLSFRGKDVRHNFISHLNAALCRK--KIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKIL   94 (163)
Q Consensus        18 VFISy~~~D~~~~fv~~L~~~L~~~--gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~   94 (163)
                      |||||++.+.+..|+.+|.++|+++  |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|.||+.||..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333568999999999999  999999886 9999999999999999999999999999999999999999999


Q ss_pred             HhhhhcC--ceeEeEEEecCCcccc-cccCchHHHHHHHHHHhhhC--hHHHHHHHHHHH
Q 040920           95 ESKNKYG--QIVVPVFYLVDPSDVR-NQTGTFGDSFSKLEERFKEK--IDMLQTWRIAMR  149 (163)
Q Consensus        95 ~~~~~~~--~~viPVfy~v~p~~v~-~q~~~f~~~f~~~~~~~~~~--~e~~~~W~~aL~  149 (163)
                      ++....+  ..|+|||+++.+++++ .+.+.|+..|..+.+....+  .++...|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9876544  8999999999999999 79999999888776665433  578999999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.79  E-value=7.4e-20  Score=127.86  Aligned_cols=87  Identities=30%  Similarity=0.462  Sum_probs=75.4

Q ss_pred             EEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHHHhh
Q 040920           18 VFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESK   97 (163)
Q Consensus        18 VFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~~~~   97 (163)
                      |||||+++|.  .++..|...|++.|+++|+|.++.+|+.+.+.|.++|++|+.+|+++|++|..|+||..|+..+.+  
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            8999999994  699999999999999999997789999999999999999999999999999999999999999843  


Q ss_pred             hhcCceeEeEEEe
Q 040920           98 NKYGQIVVPVFYL  110 (163)
Q Consensus        98 ~~~~~~viPVfy~  110 (163)
                        .+..||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              45589999964

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.22  E-value=2.4e-11  Score=105.09  Aligned_cols=104  Identities=25%  Similarity=0.349  Sum_probs=83.4

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCc----C----
Q 040920           12 PHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYA----S----   82 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~----~----   82 (163)
                      -+.+.||||||+..- ...+++-|...|+-+|++||+|-+ +..|. +...+.+.|...+.+|+|++||.+    +    
T Consensus       609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC  686 (832)
T KOG3678|consen  609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC  686 (832)
T ss_pred             ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence            346799999998764 457999999999999999999988 98886 567899999999999999999976    3    


Q ss_pred             chhhHHHHHHHHHhhhhcCceeEeEEE---------ecCCcccccccC
Q 040920           83 SRLCLNELVKILESKNKYGQIVVPVFY---------LVDPSDVRNQTG  121 (163)
Q Consensus        83 S~wC~~El~~~~~~~~~~~~~viPVfy---------~v~p~~v~~q~~  121 (163)
                      -.|..+||..+++|    +..|||||-         ++.|.|++..+.
T Consensus       687 eDWVHKEl~~Afe~----~KNIiPI~D~aFE~Pt~ed~iPnDirmi~k  730 (832)
T KOG3678|consen  687 EDWVHKELKCAFEH----QKNIIPIFDTAFEFPTKEDQIPNDIRMITK  730 (832)
T ss_pred             HHHHHHHHHHHHHh----cCCeeeeecccccCCCchhcCcHHHHHHHh
Confidence            45666677777766    459999994         256777775543

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.72  E-value=2.6e-08  Score=72.83  Aligned_cols=90  Identities=21%  Similarity=0.326  Sum_probs=48.0

Q ss_pred             eeEEEeccccccccchHHHHHHHHhcC-------Ceee-ee---------cCC-CCCCCcchHHHHHhhhhCceEEEEee
Q 040920           16 YDVFLSFRGKDVRHNFISHLNAALCRK-------KIET-FI---------DDK-LNRGNEISPSLSSAIEGSKISIVIFS   77 (163)
Q Consensus        16 ydVFISy~~~D~~~~fv~~L~~~L~~~-------gi~~-f~---------D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS   77 (163)
                      |+|||||++.|.. ..+..|...+...       .+.. |.         +.. ....+.|...|.++|..|.++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999998853 3677777777652       2211 11         111 12334678899999999999999999


Q ss_pred             cCCcCchhhHHHHHHHHHhhhhcCceeEeEEEe
Q 040920           78 KGYASSRLCLNELVKILESKNKYGQIVVPVFYL  110 (163)
Q Consensus        78 ~~y~~S~wC~~El~~~~~~~~~~~~~viPVfy~  110 (163)
                      ++...|.|+..|+..+++    .+..||.|.+.
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence            999999999999999876    35578887653

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.01  E-value=3.8e-05  Score=56.89  Aligned_cols=64  Identities=20%  Similarity=0.365  Sum_probs=52.0

Q ss_pred             eEEEeccccccc-cchHHHHHHHHhcC-CeeeeecCC-CC--CCCcchHHHHHhhhhCceEEEEeecCC
Q 040920           17 DVFLSFRGKDVR-HNFISHLNAALCRK-KIETFIDDK-LN--RGNEISPSLSSAIEGSKISIVIFSKGY   80 (163)
Q Consensus        17 dVFISy~~~D~~-~~fv~~L~~~L~~~-gi~~f~D~~-~~--~G~~i~~~i~~aI~~S~~~IvvlS~~y   80 (163)
                      .|||||++.... ...|..|...|++. |+.|.+|.. ..  ++.....=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            599999985432 36789999999999 999999986 52  366677777888999999999999554

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.17  E-value=0.0012  Score=48.21  Aligned_cols=96  Identities=21%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             eEEEeccccccccchHHHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCC-c------------C
Q 040920           17 DVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGY-A------------S   82 (163)
Q Consensus        17 dVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y-~------------~   82 (163)
                      .|||.|+ +|.  ..+..+...|+..|+.+.+-.+ ...|..+.+.+.+.+.+++..|++++|+= .            .
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            4899998 553  6888899999988887765444 78899999999999999999999999962 1            2


Q ss_pred             chhhHHHHHHHHHhhhhcCceeEeEEEe--cCCcccc
Q 040920           83 SRLCLNELVKILESKNKYGQIVVPVFYL--VDPSDVR  117 (163)
Q Consensus        83 S~wC~~El~~~~~~~~~~~~~viPVfy~--v~p~~v~  117 (163)
                      -...+.|+..++...  +..+++-+.-+  --|||+.
T Consensus        78 R~NVifE~G~f~g~L--Gr~rv~~l~~~~v~~PSDl~  112 (125)
T PF10137_consen   78 RQNVIFELGLFIGKL--GRERVFILVKGGVELPSDLS  112 (125)
T ss_pred             ccceeehhhHHHhhc--CcceEEEEEcCCccCCcccC
Confidence            344677888877642  23344444321  2355554

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=95.23  E-value=0.064  Score=35.98  Aligned_cols=67  Identities=19%  Similarity=0.165  Sum_probs=49.1

Q ss_pred             eEEEeccccccccchHHHHHHHHhcCCeeeeecCCC-CCCCcchHHHHHhhhhCceEEEEeecCCcCch
Q 040920           17 DVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKL-NRGNEISPSLSSAIEGSKISIVIFSKGYASSR   84 (163)
Q Consensus        17 dVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~-~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~   84 (163)
                      .||||-.-.|.. .--..|...|.+.|.....-+.+ ..+....+.+++.|++|+++|.++-..|-..+
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~   68 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP   68 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence            389998777753 34567777887777766543333 33556667899999999999999999997643

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=93.04  E-value=0.62  Score=32.69  Aligned_cols=67  Identities=18%  Similarity=0.069  Sum_probs=50.1

Q ss_pred             cchHHHHHHHHhcCCeeeeecCC--CC---CC----CcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHHHh
Q 040920           29 HNFISHLNAALCRKKIETFIDDK--LN---RG----NEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILES   96 (163)
Q Consensus        29 ~~fv~~L~~~L~~~gi~~f~D~~--~~---~G----~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~~~   96 (163)
                      ..+...+.+.|++.|+.+|...+  ..   .+    ..|.+.-.++|++|+++|+++...- .+.-+..|+..+...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            46889999999999999997553  21   12    2344555679999999999998766 567788899998764

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=92.89  E-value=0.11  Score=42.40  Aligned_cols=98  Identities=17%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHh--cCCeeeeecCC----CCCCCcchHHHHHhhh--hCceEEEEeecCCcCc
Q 040920           12 PHIKYDVFLSFRGKDVRHNFISHLNAALC--RKKIETFIDDK----LNRGNEISPSLSSAIE--GSKISIVIFSKGYASS   83 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~--~~gi~~f~D~~----~~~G~~i~~~i~~aI~--~S~~~IvvlS~~y~~S   83 (163)
                      ..+.||+=|||.|+- | +.|+....+++  ..-+..|+|..    +-+|+ +. .++.-+-  .|+..+|.+..+|...
T Consensus       174 ~~~~~DiG~SFaGEA-R-~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~-~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         174 SEKPVDSGISFAGEA-R-NLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LV-STLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             cccccceeeEeehhh-h-hHHHHHHHhhhcccCCceeeeechhhccccCcc-HH-HhcccccCceEEEEEEEeCCceEEe
Confidence            567899999999975 3 79999999998  33456777754    33443 22 3333332  5888999999999999


Q ss_pred             hhhHHHHHHHHHhhhhcCceeEeEEE-ecCCcc
Q 040920           84 RLCLNELVKILESKNKYGQIVVPVFY-LVDPSD  115 (163)
Q Consensus        84 ~wC~~El~~~~~~~~~~~~~viPVfy-~v~p~~  115 (163)
                      .||.-|...+-+..  .-+.+.||-| +++-+-
T Consensus       250 ~~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a  280 (329)
T COG4916         250 STCHIEGLEGRLNP--ILDTGFRIKYLYADNIA  280 (329)
T ss_pred             eeeccchhhccccc--cccccceEEEEecCCcc
Confidence            99999987764421  1245667766 344433

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=91.98  E-value=0.63  Score=36.76  Aligned_cols=101  Identities=23%  Similarity=0.222  Sum_probs=68.7

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHhc--CCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCc--------
Q 040920           12 PHIKYDVFLSFRGKDVRHNFISHLNAALCR--KKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYA--------   81 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~--~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~--------   81 (163)
                      ++.+ .|||-|+++    ..+.....+|.+  +-..+|.|.-+..|..+.+.+.+-|.+++..|++.+|+=.        
T Consensus        80 p~~k-kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~  154 (233)
T COG4271          80 PNLK-KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSR  154 (233)
T ss_pred             CCce-eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccch
Confidence            3344 999999763    366666666653  3456777777889999999999999999999999999844        


Q ss_pred             ------CchhhHHHHHHHHHhhhhcCceeEeEEEe----cCCcccccc
Q 040920           82 ------SSRLCLNELVKILESKNKYGQIVVPVFYL----VDPSDVRNQ  119 (163)
Q Consensus        82 ------~S~wC~~El~~~~~~~~~~~~~viPVfy~----v~p~~v~~q  119 (163)
                            .......||...+...  ++.+|+-+.-+    --|||+...
T Consensus       155 ~k~~praRqNVifELGm~mgrL--gRkrv~Il~k~~envelPSDi~Gv  200 (233)
T COG4271         155 EKAFPRARQNVIFELGMFMGRL--GRKRVMILMKRDENVELPSDIAGV  200 (233)
T ss_pred             hhccccccccchhhHhhHHhhc--ccceEEEEecccccccCccccCce
Confidence                  1223567888777643  23344433321    237776543

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=83.98  E-value=7.5  Score=24.64  Aligned_cols=61  Identities=16%  Similarity=0.094  Sum_probs=37.6

Q ss_pred             HHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHHHhhhhcCceeE
Q 040920           33 SHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVV  105 (163)
Q Consensus        33 ~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~vi  105 (163)
                      .-|+.-|++.|+++-..+.          ..+++....-++++++|.+.-+.  ..++..+.+..+.++..||
T Consensus         8 ~a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            4567778888988844331          12344557889999999966553  3455555555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		1e-30
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-30

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 88/143 (61%), Gaps = 3/143 (2%)
Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISI 73
           KYDVFLSFRG D RHNFIS L   L R+ I TF DDK L  G   SP L S IE S+ ++
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 74  VIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEER 133
           V+ S+ YA+S  CL+ELV I++ + K    V+P+FY V+P+ VR QTG   + F K   R
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127
Query: 134 FKEKIDMLQTWRIAMREAANLSG 156
             E  + +  WR A+   A LSG
Sbjct: 128 --EDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 4/159 (2%)
Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETF-IDDKLNRGNEIS 59
           ++ S++     P ++Y+VFLSFRG D R  F   L  +L R KI TF  DD+L +G EI 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80
Query: 60  PSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRN 118
           P+L  AI+ SKI + I S GYA S+ CL EL +I+  + +   +I++P+FY+VDPSDVR+
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140
Query: 119 QTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGF 157
           QTG +  +F K   +F  +   +Q W+ A+++  +L G+
Sbjct: 141 QTGCYKKAFRKHANKFDGQ--TIQNWKDALKKVGDLKGW 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	9e-86
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-85
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	7e-68
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	6e-12
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	1e-06
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	1e-04
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	2e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  248 bits (635), Expect = 9e-86
 Identities = 71/162 (43%), Positives = 94/162 (58%), Gaps = 10/162 (6%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEIS 59
           M+S +++       KYDVFLSFRG D RHNFIS L   L R+ I TF DDK L  G   S
Sbjct: 1   MSSHTAT-------KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFS 53

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P L S IE S+ ++V+ S+ YA+S  CL+ELV I++ + K    V+P+FY V+P+ VR Q
Sbjct: 54  PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQ 113

Query: 120 TGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHG 161
           TG   + F K   R     + +  WR A+   A LSG  S  
Sbjct: 114 TGVLAEQFKKHASREDP--EKVLKWRQALTNFAQLSGDCSGD 153

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  248 bits (635), Expect = 2e-85
 Identities = 66/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)

Query: 1   MASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDD-KLNRGNEIS 59
           ++ S++     P ++Y+VFLSFRG D R  F   L  +L R KI TF DD +L +G EI 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRN 118
           P+L  AI+ SKI + I S GYA S+ CL EL +I+  + +   +I++P+FY+VDPSDVR+
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140

Query: 119 QTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGIR 163
           QTG +  +F K   +F      +Q W+ A+++  +L G+      
Sbjct: 141 QTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKND 183

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  202 bits (515), Expect = 7e-68
 Identities = 27/148 (18%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 2   ASSSSSINMIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISP 60
           A  +++ ++     +D+F+S   +D + +F+  L   L     E + DD  L  G+ +  
Sbjct: 7   AGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65

Query: 61  SLSSAIEGSKISIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           S+   +  S+  IV+ S  +        EL  + + ++     ++P+++ V   +V + +
Sbjct: 66  SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAM 148
            T  D  +         +D +    +A+
Sbjct: 126 PTMADKLAFNTSTK--SVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 58.9 bits (143), Expect = 6e-12
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAAL--CRKKIETFIDDK-LNRGNEISPSLSSAIEGSKI 71
            YDV +    +D        L + L      +  F+  +    G  I   L  A+  S  
Sbjct: 10  DYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 72  SIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117
            +++ + G+     C  ++++ L          +P+   +  +   
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 15  KYDVFLSFRGKD---VRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKI 71
           ++  F+S+   D   V++  I +L        I  +     + G  IS ++ S IE S  
Sbjct: 35  RFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESY-FDPGKSISENIVSFIEKSYK 93

Query: 72  SIVIFSKGYASSRLCLNEL 90
           SI + S  +  +  C  E 
Sbjct: 94  SIFVLSPNFVQNEWCHYEF 112

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 16 YDVFLSFRGKD---VRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKIS 72
          YD F+S+  +D   V +  +  L       K+     D    G  I  ++  +IE S  +
Sbjct: 6  YDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRD-FIHGKWIIDNIIDSIEKSHKT 64

Query: 73 IVIFSKGYASSRLCLNEL 90
          + + S+ +  S     EL
Sbjct: 65 VFVLSENFVKSEWXKYEL 82

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 15  KYDVFLSFRGKDVR---------HNFISHLNAALCRKK--IETFIDDK-LNRGNEISPSL 62
            YD +LS+   D             F   +   +  K    + FI D+ L         +
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 63  SSAIEGSKISIVIFSKGYA-SSRLCLNELVKIL-ESKNKYGQIVVPVFY 109
           +  ++ SK  I++ +  Y       + EL   L          V+ +  
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIEC 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2js7_A	160	Myeloid differentiation primary response protein M	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.25
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.03
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	94.12
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	90.04
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	80.59

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=5.4e-55  Score=340.46  Aligned_cols=151  Identities=43%  Similarity=0.772  Sum_probs=140.8

Q ss_pred             CCCCceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHH
Q 040920           10 MIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLN   88 (163)
Q Consensus        10 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~   88 (163)
                      ..+.++||||||||++|+|+.|++||+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||++|+||++
T Consensus        30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~  109 (204)
T 3ozi_A           30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM  109 (204)
T ss_dssp             ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred             CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence            568899999999999999989999999999999999999977 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh-cCceeEeEEEecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccCCC
Q 040920           89 ELVKILESKNK-YGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGI  162 (163)
Q Consensus        89 El~~~~~~~~~-~~~~viPVfy~v~p~~v~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~~~  162 (163)
                      ||++|++|.++ ++++||||||+|+|++||+|+|.||++|.+|++++  +.+++++||.||++||+++||++.+.
T Consensus       110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~  182 (204)
T 3ozi_A          110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKN  182 (204)
T ss_dssp             HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred             HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCC
Confidence            99999999865 57899999999999999999999999999999887  47899999999999999999999764

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-53  Score=326.86  Aligned_cols=147  Identities=48%  Similarity=0.752  Sum_probs=127.6

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHH
Q 040920           12 PHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNEL   90 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El   90 (163)
                      .+++||||||||++|+|.+|++||+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            4578999999999999989999999999999999999977 999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcCceeEeEEEecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 040920           91 VKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH  160 (163)
Q Consensus        91 ~~~~~~~~~~~~~viPVfy~v~p~~v~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~  160 (163)
                      ++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++  .+.+++++||.||++|||++||++.
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            9999999889999999999999999999999999999999987  5689999999999999999999984

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=2.8e-37  Score=231.37  Aligned_cols=136  Identities=18%  Similarity=0.284  Sum_probs=117.6

Q ss_pred             CCCCceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHH
Q 040920           10 MIPHIKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLN   88 (163)
Q Consensus        10 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~   88 (163)
                      +++.++|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.|.++|.++|++|+++|+|+|++|++|.||++
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            56789999999999999 568999999999999999999997 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCceeEeEEEecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHh
Q 040920           89 ELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREA  151 (163)
Q Consensus        89 El~~~~~~~~~~~~~viPVfy~v~p~~v~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v  151 (163)
                      ||..++++...++++||||||+++|++|++|+|.|++.|....     ....+.++-..|.++
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~-----~~~~~~~ia~~l~~l  151 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT-----STKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET-----TTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc-----CcccHHHHHHHHHHH
Confidence            9999999877778899999999999999999999998775221     133455555555543

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=3.1e-31  Score=197.41  Aligned_cols=132  Identities=14%  Similarity=0.222  Sum_probs=93.0

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHhc--CCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHH
Q 040920           12 PHIKYDVFLSFRGKDVRHNFISHLNAALCR--KKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLN   88 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~--~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~   88 (163)
                      .++.|||||||+++|+  .|+.+|..+|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||+.
T Consensus         7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~   84 (146)
T 3ub2_A            7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY   84 (146)
T ss_dssp             TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred             CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence            5578999999999997  589999999998  6999999877 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCceeEeEEEecCCcccc----cccCchHHHHHHHHHHhhhChHHHHHHHHHH
Q 040920           89 ELVKILESKNKYGQIVVPVFYLVDPSDVR----NQTGTFGDSFSKLEERFKEKIDMLQTWRIAM  148 (163)
Q Consensus        89 El~~~~~~~~~~~~~viPVfy~v~p~~v~----~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL  148 (163)
                      |+..|+.+...+..+||||||+++++++.    ........   .....|..-.+.|.+|+.||
T Consensus        85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~---~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGR---GPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETT---SGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeecc---ChHhhHHHHHHHHHHHHHhc
Confidence            99999997633344788999998866554    33321111   12233333467889998876

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=3.8e-27  Score=175.61  Aligned_cols=104  Identities=15%  Similarity=0.272  Sum_probs=92.1

Q ss_pred             CCceeeEEEeccccccccchHHH-HHHHHhcC--CeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhH
Q 040920           12 PHIKYDVFLSFRGKDVRHNFISH-LNAALCRK--KIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCL   87 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~~--gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~   87 (163)
                      .++.|||||||+++|.  .|+.+ |..+|++.  |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4578999999999997  79986 99999986  999999887 999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hhhhcCceeEeEEEe-cCCcccc
Q 040920           88 NELVKILE-SKNKYGQIVVPVFYL-VDPSDVR  117 (163)
Q Consensus        88 ~El~~~~~-~~~~~~~~viPVfy~-v~p~~v~  117 (163)
                      .|+..|+. +.++++++||||||+ +.+..+.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            99999985 445667899999995 4554444

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=1.8e-26  Score=173.97  Aligned_cols=100  Identities=18%  Similarity=0.312  Sum_probs=90.0

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHhcC--CeeeeecCC-CCCCCcchHHHHHhhh-hCceEEEEeecCCcCchhhH
Q 040920           12 PHIKYDVFLSFRGKDVRHNFISHLNAALCRK--KIETFIDDK-LNRGNEISPSLSSAIE-GSKISIVIFSKGYASSRLCL   87 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~--gi~~f~D~~-~~~G~~i~~~i~~aI~-~S~~~IvvlS~~y~~S~wC~   87 (163)
                      .++.|||||||+++|.  .||.+|..+|+++  |+++|+|++ +.+|+.+.++|.++|+ +|+++|+|+|++|++|.||+
T Consensus        13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~   90 (160)
T 2js7_A           13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD   90 (160)
T ss_dssp             CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred             CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence            4578999999999995  7999999999984  699999887 9999999999999999 79999999999999999999


Q ss_pred             HHHHHHHHhh-hhcCceeEeEEEecCC
Q 040920           88 NELVKILESK-NKYGQIVVPVFYLVDP  113 (163)
Q Consensus        88 ~El~~~~~~~-~~~~~~viPVfy~v~p  113 (163)
                      .|+..|+++. ++++++||||||+.-+
T Consensus        91 ~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           91 FQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            9999999875 4456799999997554

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=3.1e-26  Score=175.48  Aligned_cols=99  Identities=18%  Similarity=0.312  Sum_probs=85.3

Q ss_pred             CCceeeEEEeccccccccchHHH-HHHHHhc--CCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhH
Q 040920           12 PHIKYDVFLSFRGKDVRHNFISH-LNAALCR--KKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCL   87 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~--~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~   87 (163)
                      .++.|||||||+++|.  .||.. |..+|++  +|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus        32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~  109 (178)
T 2j67_A           32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH  109 (178)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred             CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence            6688999999999996  79975 9999998  8999999887 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhhcCceeEeEEEecC
Q 040920           88 NELVKILES-KNKYGQIVVPVFYLVD  112 (163)
Q Consensus        88 ~El~~~~~~-~~~~~~~viPVfy~v~  112 (163)
                      .|+..|+.+ .++++++||||||+..
T Consensus       110 ~El~~a~~~~~~~~~~~vIpV~~~~i  135 (178)
T 2j67_A          110 YEFYFAHHNLFHENSDHIILILLEPI  135 (178)
T ss_dssp             THHHHTTCC-------CEEEEESSCC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCC
Confidence            999999864 4556789999999643

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.4e-25  Score=168.99  Aligned_cols=101  Identities=19%  Similarity=0.210  Sum_probs=88.8

Q ss_pred             ceeeEEEecccccc---------ccchHHHHHH-HHh-cCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCc
Q 040920           14 IKYDVFLSFRGKDV---------RHNFISHLNA-ALC-RKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYA   81 (163)
Q Consensus        14 ~~ydVFISy~~~D~---------~~~fv~~L~~-~L~-~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~   81 (163)
                      +.|||||||+++|.         +..||.+|.. .|+ +.|+++|+|++ +.||+.+.++|.++|++|+.+|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            46999999999996         3578888665 699 79999999887 999999999999999999999999999997


Q ss_pred             -CchhhHHHHHHHHHhh-hhcCceeEeEEEecCCc
Q 040920           82 -SSRLCLNELVKILESK-NKYGQIVVPVFYLVDPS  114 (163)
Q Consensus        82 -~S~wC~~El~~~~~~~-~~~~~~viPVfy~v~p~  114 (163)
                       .|.||..|+..|+.+. +++++.||||++...+.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence             9999999999999875 56678999999875554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=1.5e-19  Score=164.25  Aligned_cols=101  Identities=17%  Similarity=0.290  Sum_probs=90.3

Q ss_pred             CCceeeEEEeccccccccchH-HHHHHHHhc-----CCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCch
Q 040920           12 PHIKYDVFLSFRGKDVRHNFI-SHLNAALCR-----KKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSR   84 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~   84 (163)
                      ..+.|||||||+++|.  .|| ..|...|+.     .|+++|++++ +.||+.+.++|.++|++|+++|+|+|++|+.|+
T Consensus       667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~  744 (844)
T 3j0a_A          667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG  744 (844)
T ss_dssp             SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred             cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence            5679999999999996  687 779999985     5899999887 999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhh-hhcCceeEeEEEecCCc
Q 040920           85 LCLNELVKILESK-NKYGQIVVPVFYLVDPS  114 (163)
Q Consensus        85 wC~~El~~~~~~~-~~~~~~viPVfy~v~p~  114 (163)
                      ||..|+..|+.+. ++++++||||||+..|.
T Consensus       745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             STTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            9999999998754 56778999999975543

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.25  E-value=9.3e-07  Score=62.32  Aligned_cols=72  Identities=11%  Similarity=0.021  Sum_probs=52.4

Q ss_pred             ceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHH
Q 040920           14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKI   93 (163)
Q Consensus        14 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~   93 (163)
                      .+|.+||||+.+|.    ...|...|.+.|+.. .|              +.|+.|.++|++.++...+|+||..|+..+
T Consensus         3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            46999999999882    334444443435432 22              678999999999999999999999999887


Q ss_pred             HHhhhhcCceeEeEE
Q 040920           94 LESKNKYGQIVVPVF  108 (163)
Q Consensus        94 ~~~~~~~~~~viPVf  108 (163)
                      .+.    +..||-|.
T Consensus        64 ~~~----gkpIigV~   74 (111)
T 1eiw_A           64 RKS----SKPIITVR   74 (111)
T ss_dssp             TTT----TCCEEEEC
T ss_pred             HHc----CCCEEEEE
Confidence            653    44566654

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.03  E-value=0.0035  Score=47.59  Aligned_cols=111  Identities=21%  Similarity=0.257  Sum_probs=73.5

Q ss_pred             eeeEEEec--------------cccccccchHHHHHHHHhcCCeeeeecCC-C----C---C-CCcchHHHHHhhhhCce
Q 040920           15 KYDVFLSF--------------RGKDVRHNFISHLNAALCRKKIETFIDDK-L----N---R-GNEISPSLSSAIEGSKI   71 (163)
Q Consensus        15 ~ydVFISy--------------~~~D~~~~fv~~L~~~L~~~gi~~f~D~~-~----~---~-G~~i~~~i~~aI~~S~~   71 (163)
                      +--+|++|              ..+|.  .....|..--.+..+-.|.|-. .    .   . -..|...|.+.|..|+.
T Consensus         5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~   82 (189)
T 3hyn_A            5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN   82 (189)
T ss_dssp             CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred             ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence            44578888              44554  4566666666655554556642 2    1   2 23577889999999999


Q ss_pred             EEEEeecCCcCchhhHHHHHHHHHhhhhcCceeEeEEEecC-CcccccccCchHHHHHHH
Q 040920           72 SIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPVFYLVD-PSDVRNQTGTFGDSFSKL  130 (163)
Q Consensus        72 ~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~viPVfy~v~-p~~v~~q~~~f~~~f~~~  130 (163)
                      +|+++|++...|.|...|+..+++   +.+..||-|..+-. .+++.+-.|.|......+
T Consensus        83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~  139 (189)
T 3hyn_A           83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDL  139 (189)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHH
T ss_pred             EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccchhhHhhc
Confidence            999999999999999999999872   23567887765422 335554445544433333

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=94.12  E-value=0.42  Score=35.12  Aligned_cols=86  Identities=12%  Similarity=0.080  Sum_probs=58.9

Q ss_pred             CCceeeEEEecc--ccccccchHHHHHHHHhcCCeeeeecCC--CCCCCcchHHHHHhhhhCceEEEEeec--CCcCchh
Q 040920           12 PHIKYDVFLSFR--GKDVRHNFISHLNAALCRKKIETFIDDK--LNRGNEISPSLSSAIEGSKISIVIFSK--GYASSRL   85 (163)
Q Consensus        12 ~~~~ydVFISy~--~~D~~~~fv~~L~~~L~~~gi~~f~D~~--~~~G~~i~~~i~~aI~~S~~~IvvlS~--~y~~S~w   85 (163)
                      +...-.+++.-.  ..+....+...+...|++.|+.+|.-.+  ...+..|.+.-.++|++|+++|++++|  .-..++-
T Consensus         7 ~~~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G   86 (161)
T 2f62_A            7 HHMRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG   86 (161)
T ss_dssp             CCCCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH
T ss_pred             hhhhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc
Confidence            445556666632  2232036889999999999999987443  222334445558899999999999996  3334556


Q ss_pred             hHHHHHHHHHhh
Q 040920           86 CLNELVKILESK   97 (163)
Q Consensus        86 C~~El~~~~~~~   97 (163)
                      ...|+..+....
T Consensus        87 TafEiGyA~Alg   98 (161)
T 2f62_A           87 TAFEVGCAAALN   98 (161)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCC
Confidence            888999987653

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=90.04  E-value=2.5  Score=30.75  Aligned_cols=78  Identities=10%  Similarity=0.054  Sum_probs=51.9

Q ss_pred             eeeEEEecccc-c-cccchHHHHHHHHhcCCeeeeecCCC-----CCCC-------cchHHHHHhhhhCceEEEEeecCC
Q 040920           15 KYDVFLSFRGK-D-VRHNFISHLNAALCRKKIETFIDDKL-----NRGN-------EISPSLSSAIEGSKISIVIFSKGY   80 (163)
Q Consensus        15 ~ydVFISy~~~-D-~~~~fv~~L~~~L~~~gi~~f~D~~~-----~~G~-------~i~~~i~~aI~~S~~~IvvlS~~y   80 (163)
                      +..|||+=.-. + ........+...|++.| .|+.+...     ..|.       .+...-.+.|++|+++|++++   
T Consensus        11 ~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~---   86 (165)
T 2khz_A           11 PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT---   86 (165)
T ss_dssp             CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS---
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC---
Confidence            45799984322 1 11225588999999999 88654332     1221       122334579999999999997   


Q ss_pred             cCchhhHHHHHHHHHh
Q 040920           81 ASSRLCLNELVKILES   96 (163)
Q Consensus        81 ~~S~wC~~El~~~~~~   96 (163)
                      ..+.-+..|+..+...
T Consensus        87 ~~d~Gt~~EiGyA~al  102 (165)
T 2khz_A           87 QPSLGVGYELGRAVAL  102 (165)
T ss_dssp             SCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHC
Confidence            5577799999998764

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=80.59  E-value=7.8  Score=28.30  Aligned_cols=66  Identities=9%  Similarity=0.146  Sum_probs=47.6

Q ss_pred             chHHHHHHHHhcC--CeeeeecCC--C---CCCCc----chHHHHHhhhhCceEEEEeecCCcCchhhHHHHHHHHHh
Q 040920           30 NFISHLNAALCRK--KIETFIDDK--L---NRGNE----ISPSLSSAIEGSKISIVIFSKGYASSRLCLNELVKILES   96 (163)
Q Consensus        30 ~fv~~L~~~L~~~--gi~~f~D~~--~---~~G~~----i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~~El~~~~~~   96 (163)
                      .+...+.++|+.+  |+.+|.-.+  .   .++..    |...-.++|++|+++|.++. ....+.....|+..+...
T Consensus        20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~   96 (162)
T 3ehd_A           20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK   96 (162)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC
Confidence            5788899999864  899986433  1   12222    44455568999999999995 344678889999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	1e-17
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	1e-15

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 1e-17
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISI 73
           ++  F+S+ G D      + L   L ++ ++  + ++    G  I  ++ + IE S  SI
Sbjct: 12  QFHAFISYSGHD-SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 74  VIFSKGYASSRLCLNELVKILESKNKYGQIV-VPVFYLVDPSDVRNQT 120
            + S  +  S  C  EL     +    G    + +     P      +
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 1e-15
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 13  HIKYDVFLSFRGKD---VRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGS 69
           +I YD F+S+  +D   V +  +  L       K+          G  I  ++  +IE S
Sbjct: 3   NICYDAFVSYSERDAYWVENLMVQELENFNPPFKL-CLHKRDFIHGKWIIDNIIDSIEKS 61

Query: 70  KISIVIFSKGYASSRLCLNELVKIL-ESKNKYGQIVVPVFYLVDPSDVRNQ 119
             ++ + S+ +  S  C  EL        ++     + +           Q
Sbjct: 62  HKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.9
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.89
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	93.22
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.6
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	83.16

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.1e-25  Score=162.88  Aligned_cols=103  Identities=18%  Similarity=0.360  Sum_probs=91.5

Q ss_pred             CCCCceeeEEEeccccccccchH-HHHHHHHhcCCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhH
Q 040920           10 MIPHIKYDVFLSFRGKDVRHNFI-SHLNAALCRKKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCL   87 (163)
Q Consensus        10 ~~~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~   87 (163)
                      +..+++|||||||+++|.  .|| ..|...|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+.|.||.
T Consensus         7 ~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~   84 (161)
T d1fyva_           7 LQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCH   84 (161)
T ss_dssp             SSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHH
T ss_pred             cCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHH
Confidence            447789999999999995  577 5799999999999999887 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hhcCceeEeEEEecCCc
Q 040920           88 NELVKILESK-NKYGQIVVPVFYLVDPS  114 (163)
Q Consensus        88 ~El~~~~~~~-~~~~~~viPVfy~v~p~  114 (163)
                      .|+..++.+. +.+..++|||+++..|.
T Consensus        85 ~E~~~a~~~~~~~~~~~lIpV~l~~~~~  112 (161)
T d1fyva_          85 YELYFAHHNLFHEGSNSLILILLEPIPQ  112 (161)
T ss_dssp             HHHHTTSCCCSCSSCSSEEEEESSCCCG
T ss_pred             HHHHHHHHHHHHcCCCceeEEEEecCch
Confidence            9999998754 45667999999974443

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-24  Score=160.04  Aligned_cols=101  Identities=17%  Similarity=0.272  Sum_probs=88.4

Q ss_pred             CCceeeEEEeccccccccchH-HHHHHHHhc--CCeeeeecCC-CCCCCcchHHHHHhhhhCceEEEEeecCCcCchhhH
Q 040920           12 PHIKYDVFLSFRGKDVRHNFI-SHLNAALCR--KKIETFIDDK-LNRGNEISPSLSSAIEGSKISIVIFSKGYASSRLCL   87 (163)
Q Consensus        12 ~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~--~gi~~f~D~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wC~   87 (163)
                      .++.|||||||+++|.  .|| ..|...|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            6789999999999995  576 568999976  4999999877 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhhcCceeEeEEEecCCc
Q 040920           88 NELVKILES-KNKYGQIVVPVFYLVDPS  114 (163)
Q Consensus        88 ~El~~~~~~-~~~~~~~viPVfy~v~p~  114 (163)
                      .|+..++.. .++++.++|||+++..|.
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~~  107 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPIEK  107 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccCch
Confidence            999887654 356778999999974443

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.22  E-value=0.18  Score=35.05  Aligned_cols=69  Identities=10%  Similarity=0.023  Sum_probs=52.9

Q ss_pred             cchHHHHHHHHhcCCeeeeecCC--CCCCCcchHHHHHhhhhCceEEEEeecC--CcCchhhHHHHHHHHHhh
Q 040920           29 HNFISHLNAALCRKKIETFIDDK--LNRGNEISPSLSSAIEGSKISIVIFSKG--YASSRLCLNELVKILESK   97 (163)
Q Consensus        29 ~~fv~~L~~~L~~~gi~~f~D~~--~~~G~~i~~~i~~aI~~S~~~IvvlS~~--y~~S~wC~~El~~~~~~~   97 (163)
                      ..+...+...|+++|+.++.-.+  ......|-..-.+.|++|+++|+++++-  -..++-+..|+..+....
T Consensus        18 ~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~alg   90 (152)
T d2f62a1          18 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN   90 (152)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCC
Confidence            46789999999999999997433  3333456677788999999999999852  234566888999998754

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.60  E-value=0.25  Score=31.19  Aligned_cols=62  Identities=18%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             ceeeEEEeccccccccchHHHHHHHHhcCCeeeeecCCCCCCCcchHHHHHhhhhCceEEEEeecC
Q 040920           14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSKG   79 (163)
Q Consensus        14 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~   79 (163)
                      ...+|||..-++.. ...+..|...|++.|+++-+|..   +..+...+..|-..---+++|+-++
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCcHHHHHHHHHhcCCCeEEecCCc
Confidence            35789999888765 47899999999999999998763   4466667777766555566666654

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=83.16  E-value=5.2  Score=27.28  Aligned_cols=86  Identities=9%  Similarity=0.100  Sum_probs=55.7

Q ss_pred             eeeEEEec---cccccccchHHHHHHHHhcCC--eeeeecC--CC--------CCCC--------cchHHHHHhhhhCce
Q 040920           15 KYDVFLSF---RGKDVRHNFISHLNAALCRKK--IETFIDD--KL--------NRGN--------EISPSLSSAIEGSKI   71 (163)
Q Consensus        15 ~ydVFISy---~~~D~~~~fv~~L~~~L~~~g--i~~f~D~--~~--------~~G~--------~i~~~i~~aI~~S~~   71 (163)
                      +..|||+=   +..  ...++..+.+.|+++|  +.+|.-.  ..        +-+.        .|-..-.++|++|++
T Consensus         7 ~~kIYLAgP~F~~~--~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~   84 (167)
T d1s2da_           7 TGKIYLGSPFYSDA--QRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATC   84 (167)
T ss_dssp             CEEEEEECCCSSHH--HHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSE
T ss_pred             CceEEEECCCCCHH--HHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCE
Confidence            46677763   322  2368899999999887  6776421  11        0111        133345578999999


Q ss_pred             EEEEeecCCcCchhhHHHHHHHHHhhhhcCceeEeE
Q 040920           72 SIVIFSKGYASSRLCLNELVKILESKNKYGQIVVPV  107 (163)
Q Consensus        72 ~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~viPV  107 (163)
                      +|+++...... .-...|+..+....    ..||-+
T Consensus        85 vIA~ldg~~~D-~GTa~EiG~A~a~g----KPvi~~  115 (167)
T d1s2da_          85 GVFLYDMDQLD-DGSAFEIGFMRAMH----KPVILV  115 (167)
T ss_dssp             EEEEEESSSCC-HHHHHHHHHHHHTT----CCEEEE
T ss_pred             EEEEeCCCCCC-ccHHHHHHHHHHCC----CeEEEE
Confidence            99999887654 45677999988753    355544