Citrus Sinensis ID: 040962

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGTQKPPSCL
cEEEEEEccEEEEcEEEEccccEEEEEEcEEcEEEEEEEEEccccccccccccccccccEEEEccEEcccccEEEEccccEEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEcEEEEcEEEEcccccEEEEEEEcccccccccccccEEEEcEEEEEEEEEEccccEEEEEccccccEEcEEEEEEEEEEEcccccccEEEEccEEEEcccccccccc
cEEEEEEccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccccccEEccccccccccEcccccc
SMVFNFVTnsrisgitsvnsknahISLYGCHkvsidnikitapyqspntdgikigdskgikithssigtgddCIALlsgstninvtdvtcgpghgisvgslgryanernvhglavrnctfrgttngvriktwaspqanvasgftfenifmsnvenpividqmycphgscnqkitsnvqikdvtyrniwgtssTKVAVnfqcsktfpcenivlqdiylvhngrdgaatsscnfvdgdsygtqkppscl
smvfnfvtnsrisgitsvnsknAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSscnfvdgdsygtqkppscl
SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTdgikigdskgikiTHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGTQKPPSCL
**VFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFV**************
SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGTQKPPSCL
SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDS**********
SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGTQKPPSCL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGTQKPPSCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
P49063444 Exopolygalacturonase clon no no 0.983 0.547 0.493 8e-65
P35337397 Polygalacturonase OS=Bras N/A no 1.0 0.622 0.475 3e-63
P24548362 Exopolygalacturonase (Fra N/A no 0.971 0.662 0.491 4e-63
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.979 0.641 0.458 3e-62
Q39766407 Polygalacturonase OS=Goss N/A no 0.979 0.594 0.456 3e-60
Q39786407 Polygalacturonase OS=Goss N/A no 0.979 0.594 0.452 7e-60
P35339410 Exopolygalacturonase OS=Z N/A no 1.0 0.602 0.443 6e-59
Q05967396 Polygalacturonase OS=Nico N/A no 0.991 0.618 0.461 1e-58
P26216410 Exopolygalacturonase OS=Z N/A no 1.0 0.602 0.435 6e-57
P35338410 Exopolygalacturonase OS=Z N/A no 1.0 0.602 0.431 2e-56
>sp|P49063|PGLR2_ARATH Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2 Back     alignment and function desciption
 Score =  246 bits (629), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 160/243 (65%)

Query: 4   FNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKIT 63
           F  +TNS+I+ ITS NSK  H+++  C  +++ +I I AP +S NTDGI IG S G+ + 
Sbjct: 194 FTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLI 253

Query: 64  HSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGT 123
            + I TGDDC+++  G+ N+ V +V CGPGHGIS+GSLGRY NE+ V G+ VR C  + T
Sbjct: 254 GAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNT 313

Query: 124 TNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVT 183
            NGVRIKTW      +AS   FE+I M NV  P++IDQ YCP+G C   + S V++ DVT
Sbjct: 314 DNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVT 373

Query: 184 YRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGTQKP 243
            + I GTS+TKVAV   CSK  PC NI L DI LVHNG++G A S+C+ +     G   P
Sbjct: 374 IKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGKLVP 433

Query: 244 PSC 246
            +C
Sbjct: 434 AAC 436
May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 6EC: 7
>sp|P35337|PGLR_BRANA Polygalacturonase OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1 Back     alignment and function description
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
225423446 396 PREDICTED: exopolygalacturonase [Vitis v 0.995 0.621 0.578 2e-74
297842619 404 predicted protein [Arabidopsis lyrata su 0.995 0.608 0.562 2e-73
449483282 403 PREDICTED: exopolygalacturonase-like [Cu 1.0 0.612 0.546 7e-73
224061322 367 predicted protein [Populus trichocarpa] 0.991 0.667 0.550 7e-73
224106375 395 predicted protein [Populus trichocarpa] 1.0 0.625 0.536 9e-72
15225803 664 glycosyl hydrolase and polygalacturonase 0.983 0.365 0.552 9e-71
5734763 369 Similar to polygalacturonase [Arabidopsi 0.995 0.666 0.542 2e-70
15220038 402 Pectin lyase-like protein [Arabidopsis t 0.995 0.611 0.542 3e-70
297823097 404 hypothetical protein ARALYDRAFT_902380 [ 0.983 0.601 0.544 1e-69
297844650 401 glycoside hydrolase family 28 protein [A 1.0 0.615 0.528 4e-69
>gi|225423446|ref|XP_002273801.1| PREDICTED: exopolygalacturonase [Vitis vinifera] gi|297738101|emb|CBI27302.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/247 (57%), Positives = 181/247 (73%), Gaps = 1/247 (0%)

Query: 1   SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGI 60
           S+ F FVTN RI  ITS+NSK  H ++Y   K+SI+++KI AP +SPNTDGI IG S  I
Sbjct: 151 SLSFKFVTNGRIDHITSINSKMFHFNIYDNQKISINHVKILAPAESPNTDGIHIGRSNDI 210

Query: 61  KITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTF 120
           +IT+S I TGDDCI+L  GS +I++ +V CGPGHGISVGSLG+   E  V G+ VRNCTF
Sbjct: 211 RITNSEIRTGDDCISLKQGSRDIHIQNVQCGPGHGISVGSLGKDEGEEEVRGITVRNCTF 270

Query: 121 RGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIK 180
           +G+ NG+RIKTWA+   N+AS FTFE+I + NV NPI IDQ YCPH  CN+   S V+IK
Sbjct: 271 QGSDNGLRIKTWAASTRNIASDFTFEDIVVENVRNPINIDQEYCPHPPCNEG-ESQVEIK 329

Query: 181 DVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGT 240
           +V +RNI GTSSTKVAV+  CS   PC +I L +I LV++ + G ATSSC  V+G S G 
Sbjct: 330 NVKFRNIRGTSSTKVAVSLICSSRIPCSDIELHNIDLVYHDQGGPATSSCRHVNGVSSGV 389

Query: 241 QKPPSCL 247
           Q+PPSC+
Sbjct: 390 QRPPSCI 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297842619|ref|XP_002889191.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335032|gb|EFH65450.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449483282|ref|XP_004156544.1| PREDICTED: exopolygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224061322|ref|XP_002300425.1| predicted protein [Populus trichocarpa] gi|222847683|gb|EEE85230.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106375|ref|XP_002314146.1| predicted protein [Populus trichocarpa] gi|222850554|gb|EEE88101.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15225803|ref|NP_180874.1| glycosyl hydrolase and polygalacturonase domain-containing protein [Arabidopsis thaliana] gi|2924778|gb|AAC04907.1| putative polygalacturonase [Arabidopsis thaliana] gi|330253698|gb|AEC08792.1| glycosyl hydrolase and polygalacturonase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5734763|gb|AAD50028.1|AC007651_23 Similar to polygalacturonase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15220038|ref|NP_173158.1| Pectin lyase-like protein [Arabidopsis thaliana] gi|332191430|gb|AEE29551.1| Pectin lyase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297823097|ref|XP_002879431.1| hypothetical protein ARALYDRAFT_902380 [Arabidopsis lyrata subsp. lyrata] gi|297325270|gb|EFH55690.1| hypothetical protein ARALYDRAFT_902380 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297844650|ref|XP_002890206.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] gi|297336048|gb|EFH66465.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2020352402 AT1G17150 [Arabidopsis thalian 1.0 0.614 0.512 5.8e-66
TAIR|locus:2046555 664 AT2G33160 [Arabidopsis thalian 0.983 0.365 0.520 9.4e-66
TAIR|locus:2032125404 AT1G78400 [Arabidopsis thalian 1.0 0.611 0.495 6.9e-63
TAIR|locus:2047223404 AT2G15450 [Arabidopsis thalian 1.0 0.611 0.498 7.9e-62
TAIR|locus:2066251402 AT2G26620 [Arabidopsis thalian 1.0 0.614 0.489 2.7e-61
TAIR|locus:2047153404 AT2G15470 [Arabidopsis thalian 1.0 0.611 0.490 9e-61
TAIR|locus:2030797404 AT1G43080 [Arabidopsis thalian 1.0 0.611 0.490 1.2e-60
TAIR|locus:2047218402 AT2G15460 [Arabidopsis thalian 0.983 0.604 0.497 2.4e-60
TAIR|locus:2077437401 AT3G07840 [Arabidopsis thalian 0.995 0.613 0.469 6.4e-60
TAIR|locus:2030791444 AT1G43090 [Arabidopsis thalian 0.967 0.538 0.502 8.1e-60
TAIR|locus:2020352 AT1G17150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 127/248 (51%), Positives = 166/248 (66%)

Query:     1 SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTXXXXXXXXXXX 60
             +M F+FV NS ++GITS+NSK  H +       SI  + I AP  SPNT           
Sbjct:   154 NMGFDFVKNSSMNGITSLNSKAGHFNFLSVDHFSITRVNIIAPSNSPNTDGIKIALSSNM 213

Query:    61 XXTHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTF 120
               +++ I TGDDCIA+LSG+TN ++ +V CGPGHGIS+GSLG+  +E+NV+GL VRN  F
Sbjct:   214 QISNTHISTGDDCIAMLSGNTNFDIYNVKCGPGHGISIGSLGKNKDEKNVNGLMVRNSVF 273

Query:   121 RGTTNGVRIKTWASPQANVAS-GFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQI 179
              GTTNG+RIKTW S  + +      +EN+ M NVENPI IDQ YCP+  C+    S++QI
Sbjct:   274 TGTTNGIRIKTWESSASTIRIINLVYENLQMINVENPIGIDQKYCPYPPCSNMGDSHIQI 333

Query:   180 KDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYG 239
             ++VT +NIWGTS  KVAV FQCSKTFPC+++ L DI L H+G DG A++ C  VDG + G
Sbjct:   334 RNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLIDINLTHHGVDGPASALCENVDGSATG 393

Query:   240 TQKPPSCL 247
                PP CL
Sbjct:   394 KMVPPHCL 401
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2046555 AT2G33160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032125 AT1G78400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047223 AT2G15450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066251 AT2G26620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047153 AT2G15470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030797 AT1G43080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047218 AT2G15460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077437 AT3G07840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030791 AT1G43090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030024001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (396 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-93
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-77
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-67
PLN02155394 PLN02155, PLN02155, polygalacturonase 2e-65
PLN03010409 PLN03010, PLN03010, polygalacturonase 2e-62
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 4e-60
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-58
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 8e-15
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information 
 Score =  280 bits (718), Expect = 1e-93
 Identities = 131/247 (53%), Positives = 169/247 (68%), Gaps = 1/247 (0%)

Query: 1   SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGI 60
           S+ F  + N+ + GITSVNSK  HI+L  C       +KI+AP  SPNTDGI I  S G+
Sbjct: 157 SVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGV 216

Query: 61  KITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTF 120
            I+ S IGTGDDCI++  G++ + +T + CGPGHGISVGSLGRY NE +V GL VR+CTF
Sbjct: 217 YISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTF 276

Query: 121 RGTTNGVRIKTWA-SPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQI 179
            GTTNG+RIKTWA SP  + A+  TFENI M+NV NPI+IDQ YCP  SC  K  S V +
Sbjct: 277 TGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTL 336

Query: 180 KDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYG 239
            D+ ++NI GTSS++VAV  +CS+  PC+ + LQD++L  +  +G  +SSC  V     G
Sbjct: 337 SDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIG 396

Query: 240 TQKPPSC 246
           TQ PP C
Sbjct: 397 TQIPPPC 403

Length = 404
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PLN02155394 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.97
PLN02218431 polygalacturonase ADPG 99.9
PLN03010409 polygalacturonase 99.9
PLN03003456 Probable polygalacturonase At3g15720 99.9
PLN02793443 Probable polygalacturonase 99.89
PLN02155394 polygalacturonase 99.89
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.88
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.88
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.66
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.61
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.14
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 99.13
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.83
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.74
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.68
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.61
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.47
smart00656190 Amb_all Amb_all domain. 98.46
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.43
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.38
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.36
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.3
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.28
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.18
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.97
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.84
smart00656190 Amb_all Amb_all domain. 97.64
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.13
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.49
PLN02773317 pectinesterase 95.29
PLN02480343 Probable pectinesterase 95.27
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.45
PLN02773317 pectinesterase 94.23
PLN02665366 pectinesterase family protein 93.32
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 92.69
PLN02665366 pectinesterase family protein 92.43
PLN02682369 pectinesterase family protein 92.3
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 92.27
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 91.94
PRK10531422 acyl-CoA thioesterase; Provisional 91.56
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 91.35
PLN02480343 Probable pectinesterase 91.26
PLN02634359 probable pectinesterase 91.25
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 91.03
PLN02682369 pectinesterase family protein 90.89
PLN02176340 putative pectinesterase 90.83
PLN02671359 pectinesterase 90.8
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 90.17
PLN02916502 pectinesterase family protein 89.85
PLN02170529 probable pectinesterase/pectinesterase inhibitor 89.68
PLN02170529 probable pectinesterase/pectinesterase inhibitor 89.65
PLN02432293 putative pectinesterase 89.51
PLN02468565 putative pectinesterase/pectinesterase inhibitor 89.37
PLN02506537 putative pectinesterase/pectinesterase inhibitor 89.36
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 89.01
PLN02497331 probable pectinesterase 89.01
PLN02217670 probable pectinesterase/pectinesterase inhibitor 88.7
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 88.59
PLN02497331 probable pectinesterase 88.52
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 88.43
PLN02432293 putative pectinesterase 88.19
PLN02671359 pectinesterase 88.15
PLN02176340 putative pectinesterase 88.08
PLN02304379 probable pectinesterase 87.83
PLN02201520 probable pectinesterase/pectinesterase inhibitor 87.51
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 87.34
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 87.18
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 86.95
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 86.8
PLN02488509 probable pectinesterase/pectinesterase inhibitor 86.75
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 86.7
PLN02301548 pectinesterase/pectinesterase inhibitor 86.63
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 86.61
PLN02416541 probable pectinesterase/pectinesterase inhibitor 86.58
PLN02634359 probable pectinesterase 86.44
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 86.31
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 86.27
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 86.21
PLN02468565 putative pectinesterase/pectinesterase inhibitor 86.15
PLN02506537 putative pectinesterase/pectinesterase inhibitor 86.02
PLN02416541 probable pectinesterase/pectinesterase inhibitor 85.83
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 85.68
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 84.91
PLN02313587 Pectinesterase/pectinesterase inhibitor 84.87
PLN02314586 pectinesterase 84.65
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 84.64
PRK10531422 acyl-CoA thioesterase; Provisional 84.59
PLN02484587 probable pectinesterase/pectinesterase inhibitor 84.21
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 84.17
PLN02304379 probable pectinesterase 83.97
PLN02197588 pectinesterase 83.94
PLN02916502 pectinesterase family protein 83.9
PLN02201520 probable pectinesterase/pectinesterase inhibitor 83.87
PLN02314586 pectinesterase 83.38
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 83.1
PLN02197588 pectinesterase 82.92
PLN02301548 pectinesterase/pectinesterase inhibitor 82.7
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 82.5
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 82.48
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 82.2
PLN02484587 probable pectinesterase/pectinesterase inhibitor 80.86
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=3.7e-57  Score=406.79  Aligned_cols=245  Identities=45%  Similarity=0.775  Sum_probs=226.4

Q ss_pred             eEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcE
Q 040962            2 MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGST   81 (247)
Q Consensus         2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~   81 (247)
                      |+|.+|++++|+||+++|||+|++++.+|+||+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++
T Consensus       148 i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~  227 (394)
T PLN02155        148 ISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTR  227 (394)
T ss_pred             eeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCc
Confidence            78999999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             eEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCCccEEEEe
Q 040962           82 NINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQ  161 (247)
Q Consensus        82 nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~  161 (247)
                      ||+|+||.|..+||++|||+|++.+.+.++||+|+||+|.++.+|++||+|.++++|.|+||+|+||+|+++++||.|++
T Consensus       228 nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q  307 (394)
T PLN02155        228 NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQ  307 (394)
T ss_pred             eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEe
Confidence            99999999999999999999887667899999999999999999999999865457999999999999999999999999


Q ss_pred             eeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecCCCCEEcEEEEeEEEEecCCCCccCeeeecccccCCCcc
Q 040962          162 MYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGTQ  241 (247)
Q Consensus       162 ~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~  241 (247)
                      .|+......+...+.+.|+||+|+||+++.....++.|.|.++.||+||+|+||+++..++ +++.+.|+++.|.+.+++
T Consensus       308 ~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~-~~~~~~C~n~~G~~~~~~  386 (394)
T PLN02155        308 NYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKG-TPATSFCFNAVGKSLGVI  386 (394)
T ss_pred             cccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCC-CccCcEEeccEeEEcccC
Confidence            9986433222234568999999999999987778899999999999999999999999865 366899999999999999


Q ss_pred             cCCCCC
Q 040962          242 KPPSCL  247 (247)
Q Consensus       242 ~p~~~~  247 (247)
                      .|+|||
T Consensus       387 ~p~~c~  392 (394)
T PLN02155        387 QPTSCL  392 (394)
T ss_pred             Cccccc
Confidence            999997

>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 2e-13
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 2e-10
1nhc_A336 Structural Insights Into The Processivity Of Endopo 4e-10
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 5e-10
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-08
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-07
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 6e-05
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 1e-04
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
Query: 15  ITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTXXXXXXXXXXXXXTHSSIGTGDDCI 74
           ++ +NS N H+        +     I  P  + NT              +S+I TGDD +
Sbjct: 167 VSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNV 226
Query: 75  AL-----LSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRI 129
           A+      + + NI++     G GHG+S+GS         V+ + V +    GTTNG+RI
Sbjct: 227 AIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRI 281
Query: 130 KTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVT 183
           K+  S  A V +G  + N+ M NV  PIVID +Y      N    S++  KDVT
Sbjct: 282 KSDKS-AAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDWSDITFKDVT 334
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 7e-83
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 7e-77
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 3e-74
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 3e-74
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 2e-73
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 2e-72
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-70
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 4e-69
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 7e-59
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-55
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 8e-16
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-10
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-10
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-08
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 5e-08
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  253 bits (647), Expect = 7e-83
 Identities = 53/250 (21%), Positives = 94/250 (37%), Gaps = 14/250 (5%)

Query: 1   SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGI 60
            +    VT+  +  I  V++   H ++  C    + N+ I         DGI +  S  I
Sbjct: 129 ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGS-NI 186

Query: 61  KITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTF 120
            +    +   D+C+ + S + NI V  + C    G ++GSLG   +  ++     RN   
Sbjct: 187 WVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDIV---YRNVYT 243

Query: 121 RGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIK 180
             +     IK+     +   S    EN         + ID  +    +        VQ+ 
Sbjct: 244 WSSNQMYMIKSNGG--SGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA---GDGVQLN 298

Query: 181 DVTYRNIWGTSS---TKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDS 237
           ++T +N  GT +   T+  +   CS T PC ++ L+DI +       +    C    G  
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES-GSSELYLCRSAYGSG 357

Query: 238 YGTQKPPSCL 247
           Y  +   S  
Sbjct: 358 YCLKDSSSHT 367
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.95
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.93
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.93
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.93
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.92
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.92
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.91
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.91
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.9
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.9
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.89
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.88
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.88
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.8
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.79
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.66
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.54
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.51
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.5
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.47
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.47
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.35
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.57
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.57
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.44
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.42
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.39
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.32
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.32
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.31
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.28
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.22
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.1
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 98.03
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.03
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.03
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.8
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.61
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.59
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.59
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.53
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.34
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.3
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.28
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.26
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.8
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.71
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.61
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.6
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.55
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.53
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.16
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.08
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.86
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.86
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.09
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 94.51
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.31
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.28
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.11
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 92.84
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 89.77
2vfm_A559 Bifunctional tail protein; P22 tailspike protein, 88.94
2v5i_A559 Salmonella typhimurium DB7155 bacteriophage DET7 t 88.45
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 87.84
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 87.0
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 86.63
2xc1_A666 Bifunctional tail protein; hydrolase, endoglycosid 86.6
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 86.38
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 86.25
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
Probab=100.00  E-value=7.1e-48  Score=344.74  Aligned_cols=225  Identities=26%  Similarity=0.436  Sum_probs=200.9

Q ss_pred             CeEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCC-C---CCCCCeeeecCcccEEEEeeEEccCCceEEe
Q 040962            1 SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPY-Q---SPNTDGIKIGDSKGIKITHSSIGTGDDCIAL   76 (247)
Q Consensus         1 ~i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~-~---~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i   76 (247)
                      .|+|.+|+|++|+||+++|+|+|++++. |+||+|+|++|.++. +   ++|+||||+.+|+||+|+||+|.++||||++
T Consensus       128 ~i~~~~~~nv~i~~iti~nsp~~~i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIai  206 (362)
T 1czf_A          128 FFYAHGLDSSSITGLNIKNTPLMAFSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAV  206 (362)
T ss_dssp             CEEEEEEETEEEESCEEECCSSCCEEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSSCSEEE
T ss_pred             EEEEeecccEEEEEEEEecCCccEEEEe-eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEecCCCEEEE
Confidence            3789999999999999999999999999 999999999999964 3   7899999999999999999999999999999


Q ss_pred             cCCcEeEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCC-c
Q 040962           77 LSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVE-N  155 (247)
Q Consensus        77 ~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~-~  155 (247)
                      |+ .+||+|+||+|..+|||+|||+|.+ +.+.++||+|+||+|.++.+|++||+|++ ++|.|+||+|+||+|+++. +
T Consensus       207 ks-g~nI~i~n~~~~~ghGisiGS~G~~-~~~~v~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nI~~~ni~~~~v~~~  283 (362)
T 1czf_A          207 NS-GENIWFTGGTCIGGHGLSIGSVGDR-SNNVVKNVTIEHSTVSNSENAVRIKTISG-ATGSVSEITYSNIVMSGISDY  283 (362)
T ss_dssp             SS-EEEEEEESCEEESSCCEEEEEECSS-SCCEEEEEEEEEEEEEEEEEEEEEEEETT-CCEEEEEEEEEEEEEEEEEEE
T ss_pred             eC-CeEEEEEEEEEeCCceeEEeecccc-CCCCEEEEEEEeeEEECCceEEEEEEeCC-CCceEeeEEEEeEEEECcccc
Confidence            99 5999999999999999999999865 45789999999999999999999999987 5799999999999999986 7


Q ss_pred             cEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccC-CceEEEEecCCCCEEcEEEEeEEEEecCCCCccCeeeeccc
Q 040962          156 PIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSST-KVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVD  234 (247)
Q Consensus       156 ~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~-~~~~~i~g~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~  234 (247)
                      ||.|++.|+....+ ..+.+.++|+||+|+||+++... ..++.|.|. +.+|+||+|+||+++..    .....|++++
T Consensus       284 ~i~I~~~Y~~~~~~-~~p~~~~~i~nI~~~ni~gt~~~~~~~i~i~c~-~~~c~ni~~~nv~i~~~----~~~~~C~n~~  357 (362)
T 1czf_A          284 GVVIQQDYEDGKPT-GKPTNGVTIQDVKLESVTGSVDSGATEIYLLCG-SGSCSDWTWDDVKVTGG----KKSTACKNFP  357 (362)
T ss_dssp             EEEEEEEEETTEEC-SCCCSSEEEEEEEEEEEEEEECTTSEEEEEECC-TTTEEEEEEEEEEEESS----BCCSCCBSCC
T ss_pred             cEEEEEecCCCCCC-CCCCCCceEEEEEEEEEEEEecCCceEEEEEeC-CCcCcCEEEEeEEEEcC----CCcccCcCCC
Confidence            99999999863211 11224579999999999999875 578999997 78999999999999852    3457899987


Q ss_pred             c
Q 040962          235 G  235 (247)
Q Consensus       235 ~  235 (247)
                      .
T Consensus       358 ~  358 (362)
T 1czf_A          358 S  358 (362)
T ss_dssp             T
T ss_pred             C
Confidence            4
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2xc1_A Bifunctional tail protein; hydrolase, endoglycosidase, salmonella phage P22; HET: PE4; 1.65A {Enterobacteria phage P22} PDB: 1lkt_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 2e-53
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 6e-47
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-46
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 9e-45
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 2e-44
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 3e-41
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-40
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-38
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  176 bits (446), Expect = 2e-53
 Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 14/249 (5%)

Query: 1   SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGI 60
            +    VT+  +  I  V++   H ++  C    + N+ I         DGI +  S  I
Sbjct: 129 ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLDGIDVWGSN-I 186

Query: 61  KITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTF 120
            +    +   D+C+ + S + NI V  + C    G ++GSLG   +  ++     RN   
Sbjct: 187 WVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDIV---YRNVYT 243

Query: 121 RGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIK 180
             +     IK+     +   S    EN         + ID  +    +        VQ+ 
Sbjct: 244 WSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA---GDGVQLN 298

Query: 181 DVTYRNIWGTSS---TKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDS 237
           ++T +N  GT +   T+  +   CS T PC ++ L+DI +       +    C    G  
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESG-SSELYLCRSAYGSG 357

Query: 238 YGTQKPPSC 246
           Y  +   S 
Sbjct: 358 YCLKDSSSH 366
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.98
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.91
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.89
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.88
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.88
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.88
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.84
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.83
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.64
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.76
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.88
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.84
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.8
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.65
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.59
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.42
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.16
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.77
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.47
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.06
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.86
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.59
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.06
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 92.19
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 91.64
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 90.84
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 88.62
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 88.15
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 82.24
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 80.4
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=5.9e-50  Score=352.71  Aligned_cols=226  Identities=28%  Similarity=0.419  Sum_probs=204.2

Q ss_pred             CeEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCC----CCCCCCeeeecCcccEEEEeeEEccCCceEEe
Q 040962            1 SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPY----QSPNTDGIKIGDSKGIKITHSSIGTGDDCIAL   76 (247)
Q Consensus         1 ~i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~----~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i   76 (247)
                      .|.|.+|+|++|+||+|+|||+|++++.+|++|+|+|++|.++.    +++|+||||+.+|+||+|+||+|.++||||++
T Consensus       106 ~l~~~~~~nv~i~gitl~nsp~w~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIai  185 (339)
T d1ia5a_         106 FFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAV  185 (339)
T ss_dssp             CEEEEEEEEEEEESCEEECCSSCCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEE
T ss_pred             EEEEEecCCCEEeceEEEcCCceEEEEecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEe
Confidence            37899999999999999999999999999999999999999963    46899999999999999999999999999999


Q ss_pred             cCCcEeEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCC-Cc
Q 040962           77 LSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNV-EN  155 (247)
Q Consensus        77 ~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~-~~  155 (247)
                      |+ .+||+|+||+|..+||+++|+.|.. +.+.++||+|+||+|.++.+|++||++.+ ++|.|+||+||||+|+++ ++
T Consensus       186 ks-~~ni~i~n~~c~~ghG~sigslG~~-~~~~v~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nV~f~ni~~~~v~~~  262 (339)
T d1ia5a_         186 NS-GENIYFSGGYCSGGHGLSIGSVGGR-SDNTVKNVTFVDSTIINSDNGVRIKTNID-TTGSVSDVTYKDITLTSIAKY  262 (339)
T ss_dssp             SS-EEEEEEESCEEESSSCEEEEEECSS-SCCEEEEEEEEEEEEESCSEEEEEEEETT-CCCEEEEEEEEEEEEEEESSE
T ss_pred             cC-ccEEEEEEeEEeccccceecccccC-ccccEEEEEEECCcccCCcceeEEeeeCC-CCEEEEEEEEEEEEEeccccc
Confidence            99 6899999999999999999998865 45789999999999999999999999987 579999999999999998 57


Q ss_pred             cEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecCCCCEEcEEEEeEEEEecCCCCccCeeeecccc
Q 040962          156 PIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDG  235 (247)
Q Consensus       156 ~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~  235 (247)
                      ||.|++.|++....   ++..++|+||+|+||+++.....+..+.|.++.||+||+|+||++++.    .+.+.|+++++
T Consensus       263 pI~I~~~Y~~~~~~---~~~~v~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ni~~~nV~itg~----~~~~~C~nv~~  335 (339)
T d1ia5a_         263 GIVVQQNYGDTSST---PTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGG----KTSSKCTNVPS  335 (339)
T ss_dssp             EEEEEEEETCTTSC---CCSSSCEEEEEEEEEEEEECTTSEEEEEECCTTCEEEEEEEEEEEESS----BCCSCCBSCCT
T ss_pred             cEEEEeecCCCCCC---CCCCcEEEeEEEEeEEEEecccCceEEEeCCCCCEeceEEEeEEEcCC----CcceEeECCCc
Confidence            99999999865443   244568999999999999887788888999999999999999999732    45688999986


Q ss_pred             c
Q 040962          236 D  236 (247)
Q Consensus       236 ~  236 (247)
                      .
T Consensus       336 ~  336 (339)
T d1ia5a_         336 G  336 (339)
T ss_dssp             T
T ss_pred             c
Confidence            3
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure