Citrus Sinensis ID: 040981

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIHG
cHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHEEEEEEEEEEEEEEEEHcccccccccccccHHHHHHHHHHHHHccccccccccccccccHEEEEccccccEEEEEcHHHHHHHHHHHHHHHHHcc
MIAELIGTYFIIFAGCGAvavdkiygkvtfpgvcvTWGLIVMVMIYSLAHisgahfnpGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLslmldvtpqayfgtvpvgsnaQSFVAEIIISFLLMFVISgavtddraigqfgGVAVGMTIMLNVFVagpisgasmnparsigpaivkhKFRGIWLYIIGPVIGTVTGGFAYNLIKIHG
MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIHG
MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYiigpvigtvtggFAYNLIKIHG
**AELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKI**
MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIHG
MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIHG
MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIHG
iiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
iiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiii
iiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRooooooHHHHHHHHHHHHHHHHHHiiiiii
SSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiii
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIHG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query211 2.2.26 [Sep-21-2011]
P49173270 Probable aquaporin NIP-ty N/A no 0.985 0.770 0.759 8e-92
Q9FIZ9283 Putative aquaporin NIP4-1 yes no 0.985 0.734 0.698 5e-82
Q8W036283 Probable aquaporin NIP4-2 no no 0.985 0.734 0.693 2e-81
Q40746284 Aquaporin NIP1-1 OS=Oryza yes no 0.985 0.732 0.602 6e-67
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi no no 0.985 0.707 0.560 9e-66
Q0JPT5303 Aquaporin NIP1-2 OS=Oryza no no 0.985 0.686 0.548 1e-65
P08995271 Nodulin-26 OS=Glycine max no no 0.985 0.767 0.521 4e-64
Q0DK16286 Aquaporin NIP1-3 OS=Oryza no no 0.985 0.727 0.598 9e-64
Q9ATN4282 Aquaporin NIP1-1 OS=Zea m N/A no 0.985 0.737 0.588 1e-62
Q9C6T0323 Aquaporin NIP3-1 OS=Arabi no no 0.985 0.643 0.509 2e-58
>sp|P49173|NIP1_NICAL Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1 Back     alignment and function desciption
 Score =  336 bits (861), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 158/208 (75%), Positives = 185/208 (88%)

Query: 1   MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGV 60
           +IAE IGTYF+IFAGCG+VAV+KIYG VTFPG+CVTWGLIVMVM+Y++ +ISGAHFNP V
Sbjct: 45  LIAEAIGTYFVIFAGCGSVAVNKIYGSVTFPGICVTWGLIVMVMVYTVGYISGAHFNPAV 104

Query: 61  TIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAE 120
           TI  +IF +F W+QVPLYI+AQ++GS+LASGTL+L+ DVTPQAYFGTVPVGSN QS   E
Sbjct: 105 TITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSNGQSLAIE 164

Query: 121 IIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVK 180
           IIISFLLMFVISG  TDDRAIGQ  G+AVGMTI LNVFVAGPISGASMNPARSIGPAIVK
Sbjct: 165 IIISFLLMFVISGVATDDRAIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAIVK 224

Query: 181 HKFRGIWLYIIGPVIGTVTGGFAYNLIK 208
           H + G+W+Y++GP+IGT+ G F YNLI+
Sbjct: 225 HVYTGLWVYVVGPIIGTLAGAFVYNLIR 252
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Nicotiana alata (taxid: 4087)
>sp|Q9FIZ9|NIP41_ARATH Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function description
>sp|Q0JPT5|NIP12_ORYSJ Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2 Back     alignment and function description
>sp|P08995|NO26_SOYBN Nodulin-26 OS=Glycine max PE=1 SV=2 Back     alignment and function description
>sp|Q0DK16|NIP13_ORYSJ Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q9ATN4|NIP11_MAIZE Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6T0|NIP31_ARATH Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
356551787273 PREDICTED: LOW QUALITY PROTEIN: probable 0.952 0.736 0.752 4e-91
356499099261 PREDICTED: probable aquaporin NIP-type-l 0.962 0.777 0.745 4e-90
1346736270 RecName: Full=Probable aquaporin NIP-typ 0.985 0.770 0.759 4e-90
224069322279 aquaporin, MIP family, NIP subfamily [Po 0.952 0.720 0.769 7e-90
449464154269 PREDICTED: probable aquaporin NIP-type-l 0.985 0.773 0.721 4e-85
449518356269 PREDICTED: probable aquaporin NIP-type-l 0.985 0.773 0.721 5e-85
255570110 367 Nodulin-26, putative [Ricinus communis] 0.985 0.566 0.730 5e-84
224108337263 aquaporin, MIP family, NIP subfamily [Po 0.962 0.771 0.711 6e-84
255584467252 Nodulin-26, putative [Ricinus communis] 0.985 0.825 0.727 6e-84
357492183268 Aquaporin MIP family NIP subfamily [Medi 0.962 0.757 0.697 3e-83
>gi|356551787|ref|XP_003544255.1| PREDICTED: LOW QUALITY PROTEIN: probable aquaporin NIP-type-like [Glycine max] Back     alignment and taxonomy information
 Score =  339 bits (870), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 188/206 (91%)

Query: 3   AELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTI 62
           AE+IGTYF++FAGCG+VAV+KIYG VTFPGVCVTWGLIVMVMIYSL HISGAHFNP VTI
Sbjct: 48  AEVIGTYFVVFAGCGSVAVNKIYGSVTFPGVCVTWGLIVMVMIYSLRHISGAHFNPAVTI 107

Query: 63  ALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEII 122
            LAIFR+F ++QVPLYI AQ++GS+LASGTL+LMLDVTP+AYFGTVPVGSN QS VAE+I
Sbjct: 108 TLAIFRRFSYKQVPLYIFAQLLGSILASGTLALMLDVTPKAYFGTVPVGSNGQSLVAEVI 167

Query: 123 ISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHK 182
           I+FLLMFVIS   TDD+A+G F GVAVGMTIMLNVF+AGP+SGASMNPARSIGPA++KH 
Sbjct: 168 ITFLLMFVISAVSTDDKAVGDFAGVAVGMTIMLNVFIAGPVSGASMNPARSIGPALIKHV 227

Query: 183 FRGIWLYIIGPVIGTVTGGFAYNLIK 208
           ++G+W+Y++GP++G++ G  AYN ++
Sbjct: 228 YQGLWIYVVGPIVGSIAGALAYNFLR 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356499099|ref|XP_003518381.1| PREDICTED: probable aquaporin NIP-type-like [Glycine max] Back     alignment and taxonomy information
>gi|1346736|sp|P49173.1|NIP1_NICAL RecName: Full=Probable aquaporin NIP-type; AltName: Full=Pollen-specific membrane integral protein gi|665948|gb|AAA62235.1| putative membrane integral protein [Nicotiana alata] Back     alignment and taxonomy information
>gi|224069322|ref|XP_002302955.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222844681|gb|EEE82228.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449464154|ref|XP_004149794.1| PREDICTED: probable aquaporin NIP-type-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449518356|ref|XP_004166208.1| PREDICTED: probable aquaporin NIP-type-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255570110|ref|XP_002526017.1| Nodulin-26, putative [Ricinus communis] gi|223534664|gb|EEF36357.1| Nodulin-26, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224108337|ref|XP_002314811.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222863851|gb|EEF00982.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255584467|ref|XP_002532963.1| Nodulin-26, putative [Ricinus communis] gi|223527256|gb|EEF29414.1| Nodulin-26, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357492183|ref|XP_003616380.1| Aquaporin MIP family NIP subfamily [Medicago truncatula] gi|355517715|gb|AES99338.1| Aquaporin MIP family NIP subfamily [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.985 0.734 0.665 1.6e-72
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.985 0.734 0.665 5.3e-72
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.985 0.707 0.537 9.3e-59
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.985 0.702 0.476 6.3e-53
TAIR|locus:2826185323 NIP3;1 "NOD26-like intrinsic p 0.985 0.643 0.490 7.2e-52
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.890 0.652 0.482 1e-45
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.976 0.675 0.437 1.2e-42
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.976 0.691 0.404 2.8e-41
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.976 0.677 0.423 3.3e-40
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.985 0.756 0.374 3.6e-34
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 139/209 (66%), Positives = 165/209 (78%)

Query:     1 MIAELIGTYFIIFAGCGAVAVDKIYG-KVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPG 59
             +IAE+IGTYFIIF+GCG V V+ +YG  +TFPG+CVTWGLIVMVMIYS  HISGAHFNP 
Sbjct:    45 LIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPA 104

Query:    60 VTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVA 119
             VT+  A+FR+F W QVPLYI AQ+ GSLLAS TL LM +VTP+A+FGT P  S+ Q+ VA
Sbjct:   105 VTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGTTPTDSSGQALVA 164

Query:   120 EIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIV 179
             EIIISFLLMFVISG  TD RA G+  G+AVGMTI+LNVFVAGPISGASMNPARS+GPAIV
Sbjct:   165 EIIISFLLMFVISGVATDSRATGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIV 224

Query:   180 KHKFRGIWLYXXXXXXXXXXXXFAYNLIK 208
               +++GIW+Y            F YN ++
Sbjct:   225 MGRYKGIWVYIVGPFVGIFAGGFVYNFMR 253
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40746NIP11_ORYSJNo assigned EC number0.60280.98570.7323yesno
O26206AQPM_METTHNo assigned EC number0.33050.96680.8292yesno
Q8DB17AQPZ_VIBVUNo assigned EC number0.32730.97630.8917yesno
Q89EG9AQPZ_BRAJANo assigned EC number0.33480.97150.8541yesno
Q7MIV9AQPZ_VIBVYNo assigned EC number0.33180.97630.8917yesno
Q88F17AQPZ_PSEPKNo assigned EC number0.33180.96200.8826yesno
Q7N5C1AQPZ_PHOLLNo assigned EC number0.37210.97630.8917yesno
P49173NIP1_NICALNo assigned EC number0.75960.98570.7703N/Ano
Q87MQ5AQPZ_VIBPANo assigned EC number0.32880.95260.8663yesno
Q9HWZ3AQPZ_PSEAENo assigned EC number0.32880.95730.8820yesno
Q7NU39AQPZ_CHRVONo assigned EC number0.34090.96680.8908yesno
O28846AQPM_ARCFUNo assigned EC number0.35710.94780.8130yesno
Q9V5Z7AQP_DROMENo assigned EC number0.34430.94780.8163yesno
Q7WKG2AQPZ_BORBRNo assigned EC number0.36320.95730.8559yesno
Q9C4Z5AQPM_METTMNo assigned EC number0.33050.98100.8414yesno
Q7W917AQPZ_BORPANo assigned EC number0.36320.95730.8559yesno
Q9FIZ9NIP41_ARATHNo assigned EC number0.69850.98570.7349yesno
P60925AQPZ_RHOPANo assigned EC number0.32430.97630.8583yesno
Q8EHC1AQPZ_SHEONNo assigned EC number0.31360.96680.8908yesno
Q7PWV1AQP_ANOGANo assigned EC number0.32710.95260.804yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II002259
aquaporin, MIP family, NIP subfamily (279 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-114
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 3e-78
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 3e-61
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 4e-55
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 8e-48
pfam00230218 pfam00230, MIP, Major intrinsic protein 2e-47
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 6e-46
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 9e-45
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-35
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 4e-31
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 3e-24
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 9e-19
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 4e-18
PLN00183 274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 8e-05
cd00333 228 cd00333, MIP, Major intrinsic protein (MIP) superf 6e-04
pfam00230 218 pfam00230, MIP, Major intrinsic protein 0.003
COG0580 241 COG0580, GlpF, Glycerol uptake facilitator and rel 0.003
PTZ00016 294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 0.003
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information 
 Score =  328 bits (841), Expect = e-114
 Identities = 148/209 (70%), Positives = 176/209 (84%), Gaps = 1/209 (0%)

Query: 1   MIAELIGTYFIIFAGCGAVAVDKIY-GKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPG 59
           +IAE+IGTYFIIF+GCG V V+ +Y G +TFPG+CVTWGLIVMVMIYS  HISGAHFNP 
Sbjct: 45  LIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPA 104

Query: 60  VTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVA 119
           VT+  AIFR+F W QVPLYI AQ+ GSLLAS TL LM +VTP+A+FGT P  S+ Q+ VA
Sbjct: 105 VTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVA 164

Query: 120 EIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIV 179
           EIIISFLLMFVISG  TD RA+G+  G+AVGMTI+LNVFVAGPISGASMNPARS+GPAIV
Sbjct: 165 EIIISFLLMFVISGVATDSRAVGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIV 224

Query: 180 KHKFRGIWLYIIGPVIGTVTGGFAYNLIK 208
             +++GIW+YI+GP +G + GGF YNLI+
Sbjct: 225 MGRYKGIWVYIVGPFVGIIAGGFVYNLIR 253

Length = 283
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 211
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.68
PLN00184 296 aquaporin NIP1; Provisional 99.67
PLN00183 274 putative aquaporin NIP7; Provisional 99.65
PLN00167 256 aquaporin TIP5; Provisional 99.6
PLN00166 250 aquaporin TIP2; Provisional 99.59
PLN00182 283 putative aquaporin NIP4; Provisional 99.57
PRK05420 231 aquaporin Z; Provisional 99.56
PTZ00016 294 aquaglyceroporin; Provisional 99.55
PLN00027 252 aquaporin TIP; Provisional 99.55
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.55
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.52
TIGR00861 216 MIP MIP family channel proteins. processes. Some m 99.44
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.43
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.36
PF00230 227 MIP: Major intrinsic protein; InterPro: IPR000425 99.32
COG2116265 FocA Formate/nitrite family of transporters [Inorg 89.83
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-52  Score=340.32  Aligned_cols=209  Identities=39%  Similarity=0.732  Sum_probs=190.9

Q ss_pred             ChhHHHHHHHHHHHHhhhhhhccc-cCCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHHH
Q 040981            1 MIAELIGTYFIIFAGCGAVAVDKI-YGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYI   79 (211)
Q Consensus         1 ~~aEf~GT~~lv~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~yi   79 (211)
                      +++||+||++++|.+|++...+.+ .+..+.+.+++.+|+.+++.++.++++||||+|||||+++++.||+++.+++.|+
T Consensus        14 ~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~   93 (238)
T KOG0223|consen   14 LIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYI   93 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHH
Confidence            478999999999999999887774 3366788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccC----ccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHH
Q 040981           80 VAQVVGSLLASGTLSLMLDVT----PQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIML  155 (211)
Q Consensus        80 ~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~  155 (211)
                      .+|++|+++|+.+++.+.+++    ........|+.+..|+++.|++.||.|+++++...+|+|+. .+.|+.+|+.+.+
T Consensus        94 vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~-~~a~l~IG~~v~~  172 (238)
T KOG0223|consen   94 VAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS-ELAPLAIGFSVGL  172 (238)
T ss_pred             HHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-ccHHHHHHHHHHH
Confidence            999999999999999998864    11222345667899999999999999999999977887765 8999999999999


Q ss_pred             HHHHhcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhcC
Q 040981          156 NVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIH  210 (211)
Q Consensus       156 ~~~~~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~~  210 (211)
                      .++..+++||++|||||+|||++..++|++||+||++|++|+++++++||+++.+
T Consensus       173 ~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~  227 (238)
T KOG0223|consen  173 NILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIP  227 (238)
T ss_pred             HHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999865

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 4e-22
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 5e-22
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 4e-21
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 9e-21
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 3e-20
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 9e-20
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 9e-20
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 2e-19
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-19
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 4e-18
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 5e-18
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 5e-18
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 6e-18
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 7e-18
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-17
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-17
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 4e-17
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 5e-17
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 7e-17
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-16
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 1e-15
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 3e-15
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 1e-14
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 9e-12
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 9e-12
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-11
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-11
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-11
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 2e-10
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 8e-04
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 19/201 (9%)
Query: 1   MIAELIGTYFIIFAGCGAVAVDKIYGK--VTFPGVCVTWGLIVMVMIYSLAHISGAHFNP 58
           + AE  GT++++F GCG+  +   +    + F GV + WGL V+ M +++ HISG HFNP
Sbjct: 8   LAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGHFNP 67
Query: 59  GVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLD-----------VTPQAYFGT 107
            VTI L    +F  ++V  Y++AQVVG ++A+  L L+                  Y   
Sbjct: 68  AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 127
Query: 108 VPVG-SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGA 166
            P G S   + V E+++S   + VI GA TD  A   F  +A+G+ + L   ++ P++  
Sbjct: 128 SPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAPAGFAPIAIGLALTLIHLISIPVTNT 186
Query: 167 SMNPARSIGPAIVKHKFRGIW 187
           S+NPARS   AI    F+G W
Sbjct: 187 SVNPARSTAVAI----FQGGW 203
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-68
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 6e-05
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 6e-68
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 4e-05
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 9e-68
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 5e-07
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 2e-67
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 2e-06
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 3e-66
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 1e-06
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-65
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 6e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 6e-63
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 1e-06
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-61
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 3e-05
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 5e-59
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-04
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 9e-58
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 9e-05
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-56
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 4e-06
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 8e-53
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 2e-52
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 1e-05
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
 Score =  208 bits (532), Expect = 2e-68
 Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 17/222 (7%)

Query: 2   IAELIGTYFIIFAGCGAVAVDKIY--GKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPG 59
            AE  GT++++F G G+  +   +    + F GV + +GL V+ M +++ HISG HFNP 
Sbjct: 9   AAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPA 68

Query: 60  VTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNA----- 114
           VTI L    +F  ++V  Y++AQVVG ++A+  L L+               SN      
Sbjct: 69  VTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHS 128

Query: 115 -------QSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGAS 167
                   + V E+++S   + VI GA TD  A   F  +A+G+   L   ++ P++  S
Sbjct: 129 PGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAPAGFAPIAIGLACTLIHLISIPVTNTS 187

Query: 168 MNPARSIGPAIVKHKF--RGIWLYIIGPVIGTVTGGFAYNLI 207
           +NPARS   AI +  +    +W + + P++G + GG  Y  +
Sbjct: 188 VNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTL 229
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.61
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.53
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.53
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.52
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.51
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.51
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.5
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.48
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.47
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.47
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.47
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.46
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.46
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.7e-53  Score=341.03  Aligned_cols=209  Identities=28%  Similarity=0.477  Sum_probs=181.1

Q ss_pred             ChhHHHHHHHHHHHHhhhhhhccc---cCCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhH
Q 040981            1 MIAELIGTYFIIFAGCGAVAVDKI---YGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPL   77 (211)
Q Consensus         1 ~~aEf~GT~~lv~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~   77 (211)
                      +++||+||++|+++++++.....+   .+..++..++++||+++.+.+++++++||||+|||||+++++.||+++++.+.
T Consensus         7 ~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~   86 (223)
T 3gd8_A            7 VTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVF   86 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCCHHHHHH
Confidence            369999999999999988764221   12456788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCccc---cccccccCCchhHHHHHHHHHHHHHHHHhhheecCCc-CCCchhHHHHHHH
Q 040981           78 YIVAQVVGSLLASGTLSLMLDVTPQA---YFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRA-IGQFGGVAVGMTI  153 (211)
Q Consensus        78 yi~aQ~~Ga~~g~~~~~~~~~~~~~~---~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~-~~~~~~~~ig~~v  153 (211)
                      |+++|++|+++|+.+++.+++++...   ...+.|+.+..++++.|+++|++|+++++...+++|. .+...|+.+|+.+
T Consensus        87 Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~pl~iGl~v  166 (223)
T 3gd8_A           87 YIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSV  166 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCCCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCccHHHHHHH
Confidence            99999999999999999988654221   1223455688899999999999999999997554443 2457899999999


Q ss_pred             HHHHHHhcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhc
Q 040981          154 MLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKI  209 (211)
Q Consensus       154 ~~~~~~~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~  209 (211)
                      .+.+...++.||+++|||||||||++.++|+++|+||++|++|+++++++||+++.
T Consensus       167 ~~~~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~  222 (223)
T 3gd8_A          167 AIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFC  222 (223)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcC
Confidence            88887777899999999999999999999999999999999999999999999875
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 211
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-33
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 6e-31
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-26
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 4e-26
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  117 bits (295), Expect = 2e-33
 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 12/219 (5%)

Query: 1   MIAELIGTYFIIFAGCGAVAVDKIY--------GKVTFPGVCVTWGLIVMVMIYSLAHIS 52
           ++AE +     IF   G+                      V + +GL +  +  S+ HIS
Sbjct: 14  VVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHIS 73

Query: 53  GAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLM---LDVTPQAYFGTVP 109
           GAH NP VT+ L +  Q    +  +YI+AQ VG+++A+  LS +   L           P
Sbjct: 74  GAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAP 133

Query: 110 VGSNAQSFVAEIIISFLLMFVISGAVTDDR-AIGQFGGVAVGMTIMLNVFVAGPISGASM 168
             ++ Q    EII +  L+  +       R  +G  G +A+G ++ L   +A   +G  +
Sbjct: 134 GVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGI 193

Query: 169 NPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLI 207
           NPARS G +++ H F+  W++ +GP IG       Y+ I
Sbjct: 194 NPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFI 232
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.56
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.46
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.39
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.38
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.6e-51  Score=333.86  Aligned_cols=211  Identities=34%  Similarity=0.523  Sum_probs=182.1

Q ss_pred             ChhHHHHHHHHHHHHhhhhhhcccc-CCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHHH
Q 040981            1 MIAELIGTYFIIFAGCGAVAVDKIY-GKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYI   79 (211)
Q Consensus         1 ~~aEf~GT~~lv~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~yi   79 (211)
                      +++||+||++++|+++++....... +..+...+++++|+++.+.+++++++||||+|||||+++++.||+++++.+.|+
T Consensus         6 ~lAEflGT~~lvf~g~g~~~~~~~~~~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~~~~~~Yi   85 (254)
T d1fx8a_           6 CIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFI   85 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcHHHhHHHH
Confidence            4799999999999998876543332 345667889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCcc-------------------cccccccc--CCchhHHHHHHHHHHHHHHHHhhheecC
Q 040981           80 VAQVVGSLLASGTLSLMLDVTPQ-------------------AYFGTVPV--GSNAQSFVAEIIISFLLMFVISGAVTDD  138 (211)
Q Consensus        80 ~aQ~~Ga~~g~~~~~~~~~~~~~-------------------~~~~~~p~--~s~~~~~~~E~~~t~~l~~~~~~~~~~~  138 (211)
                      ++|++|+++|+++++.++++...                   ..+.+.|+  .+.+++++.|++.|++|+++++.+.+++
T Consensus        86 ~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~il~~~~~~  165 (254)
T d1fx8a_          86 VSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDG  165 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999988753211                   11223343  4789999999999999999999987665


Q ss_pred             Cc--CCCchhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhh-------------ccCCceeeeeechhHHHHHHHHH
Q 040981          139 RA--IGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVK-------------HKFRGIWLYIIGPVIGTVTGGFA  203 (211)
Q Consensus       139 ~~--~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~-------------~~~~~~~vy~v~p~~Ga~la~~~  203 (211)
                      |+  ++...|+.+|+.+...+...+++||+++|||||||||++.             ++|+++|+||++|++|+++++++
T Consensus       166 ~~~~~~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP~~Ga~ia~~~  245 (254)
T d1fx8a_         166 NGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFA  245 (254)
T ss_dssp             SSSCCGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTTHHHHHHHHHH
T ss_pred             cCCCcccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHHHHHHHHHHHH
Confidence            43  3456899999999999999999999999999999999985             47899999999999999999999


Q ss_pred             HHhhhcCC
Q 040981          204 YNLIKIHG  211 (211)
Q Consensus       204 ~~~~~~~~  211 (211)
                      ||+++.+|
T Consensus       246 y~~l~~~~  253 (254)
T d1fx8a_         246 YRKLIGRH  253 (254)
T ss_dssp             HHHHTGGG
T ss_pred             HHHHHhhh
Confidence            99998764
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure