Citrus Sinensis ID: 040984

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50-
Protein Sequence
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Secondary Structure (PSIPRED)
cEEEEEccccccEEEEEHHHHccccccHHHccEEHHHHHHcccccEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
Coil and Loop (DISEMBL)
mkikvvapperkysvWIGGSILASLSTFQQMWIskgeydesgpsivhrkcf
Flexible Loop (DISEMBL)
mkikvvapperkysvwIGGSILASLSTFQQMWISKgeydesgpsivhrkcf
Low Complexity Region (SEG)
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Disordered region (IsUnstruct)
**********RKYSVWIGGSILASLSTFQQMWISKG***************
Disordered Region (DISOPRED)
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Disordered Region (DISEMBL)
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY*************
Disordered Region (DISPRO)
*KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	51	2.2.26 [Sep-21-2011]
Q39758	376	Actin OS=Fucus vesiculosu	N/A	no	1.0	0.135	0.980	1e-24
P02580	376	Actin-3 OS=Glycine max GN	no	no	1.0	0.135	1.0	2e-24
O65314	378	Actin OS=Scherffelia dubi	N/A	no	1.0	0.134	0.960	2e-24
P53498	377	Actin OS=Chlamydomonas re	N/A	no	1.0	0.135	0.960	3e-24
Q10AZ4	377	Actin-3 OS=Oryza sativa s	yes	no	1.0	0.135	1.0	3e-24
A2XNS1	377	Actin-3 OS=Oryza sativa s	N/A	no	1.0	0.135	1.0	3e-24
P26182	376	Actin OS=Achlya bisexuali	N/A	no	1.0	0.135	0.960	3e-24
P23344	381	Actin-2 OS=Daucus carota	N/A	no	1.0	0.133	1.0	3e-24
P20904	377	Actin OS=Volvox carteri P	N/A	no	1.0	0.135	0.960	3e-24
P30168	377	Actin-71 OS=Solanum tuber	N/A	no	1.0	0.135	0.960	4e-24

>sp|Q39758|ACT_FUCVE Actin OS=Fucus vesiculosus PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/51 (98%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 326 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 376

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.
Fucus vesiculosus (taxid: 49266)

>sp|P02580|ACT3_SOYBN Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 326 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Glycine max (taxid: 3847)

>sp|O65314|ACT_SCHDU Actin OS=Scherffelia dubia PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 328 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 378

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Scherffelia dubia (taxid: 3190)

>sp|P53498|ACT_CHLRE Actin OS=Chlamydomonas reinhardtii PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q10AZ4|ACT3_ORYSJ Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XNS1|ACT3_ORYSI Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P26182|ACT_ACHBI Actin OS=Achlya bisexualis PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSIL+SLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 326 MKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Achlya bisexualis (taxid: 4766)

>sp|P23344|ACT2_DAUCA Actin-2 OS=Daucus carota PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 331 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 381

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Daucus carota (taxid: 4039)

>sp|P20904|ACT_VOLCA Actin OS=Volvox carteri PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Volvox carteri (taxid: 3067)

>sp|P30168|ACT6_SOLTU Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2

 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Solanum tuberosum (taxid: 4113)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	51
161015608	294	actin, partial [Spumella-like flagellate	1.0	0.173	0.980	3e-23
194022336	209	actin [Amphidinium carterae]	1.0	0.244	0.960	4e-23
2492668	376	RecName: Full=Actin gi|1419540|emb|CAA67	1.0	0.135	0.980	5e-23
161015587	299	actin, partial [Spumella-like flagellate	1.0	0.170	0.980	6e-23
399514676	251	actin 1, partial [Eriobotrya japonica]	1.0	0.203	1.0	6e-23
53829590	303	actin [Stramenopile sp. ex Nuclearia del	1.0	0.168	0.980	7e-23
193890828	376	actin [Amphidinium carterae]	1.0	0.135	0.960	7e-23
161015610	299	actin, partial [Spumella-like flagellate	1.0	0.170	0.980	7e-23
209981337	225	actin [Camellia sinensis]	1.0	0.226	1.0	8e-23
193890866	376	actin [Amphidinium carterae]	1.0	0.135	0.960	8e-23

>gi|161015608|gb|ABX55856.1| actin, partial [Spumella-like flagellate 391f]

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/51 (98%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 238 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 288

Source: Spumella-like flagellate 391f

Species: Spumella-like flagellate 391f

Family: Chromulinaceae

Order: Chromulinales

Class: Chrysophyceae

Superkingdom: Eukaryota

>gi|194022336|gb|ACF32716.1| actin [Amphidinium carterae]

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/51 (96%), Positives = 51/51 (100%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSIL+SLSTFQQMWISKGEYDESGP+IVHRKCF
Sbjct: 159 MKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKGEYDESGPTIVHRKCF 209

Source: Amphidinium carterae

Species: Amphidinium carterae

Genus: Amphidinium

Family: Gymnodiniaceae

Order: Gymnodiniales

Class: Dinophyceae

Superkingdom: Eukaryota

>gi|2492668|sp|Q39758.1|ACT_FUCVE RecName: Full=Actin gi|1419540|emb|CAA67388.1| beta-actin [Fucus vesiculosus]

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/51 (98%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 326 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 376

Source: Fucus vesiculosus

Species: Fucus vesiculosus

Genus: Fucus

Family: Fucaceae

Order: Fucales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

>gi|161015587|gb|ABX55848.1| actin, partial [Spumella-like flagellate JBAF32]

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/51 (98%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 247 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 297

Source: Spumella-like flagellate JBAF32

Species: Spumella-like flagellate JBAF32

Class: Chrysophyceae

Superkingdom: Eukaryota

>gi|399514676|gb|AFP43693.1| actin 1, partial [Eriobotrya japonica]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 201 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 251

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53829590|gb|AAU94674.1| actin [Stramenopile sp. ex Nuclearia delicatula CCAP1552/1]

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/51 (98%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 251 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 301

Source: Stramenopile sp. ex Nuclearia delicatula CCAP1552/1

Species: Stramenopile sp. ex Nuclearia delicatula CCAP1552/1

Superkingdom: Eukaryota

>gi|193890828|gb|ACF28577.1| actin [Amphidinium carterae]

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/51 (96%), Positives = 51/51 (100%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSIL+SLSTFQQMWISKGEYDESGP+IVHRKCF
Sbjct: 326 MKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKGEYDESGPTIVHRKCF 376

Source: Amphidinium carterae

Species: Amphidinium carterae

Genus: Amphidinium

Family: Gymnodiniaceae

Order: Gymnodiniales

Class: Dinophyceae

Superkingdom: Eukaryota

>gi|161015610|gb|ABX55857.1| actin, partial [Spumella-like flagellate 376hm]

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/51 (98%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 247 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 297

Source: Spumella-like flagellate 376hm

Species: Spumella-like flagellate 376hm

Family: Chromulinaceae

Order: Chromulinales

Class: Chrysophyceae

Superkingdom: Eukaryota

>gi|209981337|gb|ACJ05349.1| actin [Camellia sinensis]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct: 175 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 225

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193890866|gb|ACF28596.1| actin [Amphidinium carterae]

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/51 (96%), Positives = 51/51 (100%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSIL+SLSTFQQMWISKGEYDESGP+IVHRKCF
Sbjct: 326 MKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKGEYDESGPTIVHRKCF 376

Source: Amphidinium carterae

Species: Amphidinium carterae

Genus: Amphidinium

Family: Gymnodiniaceae

Order: Gymnodiniales

Class: Dinophyceae

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	51
TAIR|locus:2178128	377	ACT7 "actin 7" [Arabidopsis th	1.0	0.135	0.980	6.1e-23
DICTYBASE|DDB_G0275023	376	act22 "actin" [Dictyostelium d	1.0	0.135	0.960	1.3e-22
FB|FBgn0000043	376	Act42A "Actin 42A" [Drosophila	1.0	0.135	0.960	1.3e-22
TAIR|locus:2040656	377	ACT1 "AT2G37620" [Arabidopsis	1.0	0.135	0.960	1.3e-22
TAIR|locus:2099302	377	ACT11 "AT3G12110" [Arabidopsis	1.0	0.135	0.960	1.3e-22
TAIR|locus:2075160	377	ACT12 "AT3G46520" [Arabidopsis	1.0	0.135	0.960	1.3e-22
TAIR|locus:2084410	377	ACT3 "AT3G53750" [Arabidopsis	1.0	0.135	0.960	1.3e-22
TAIR|locus:2148298	377	ACT4 "actin 4" [Arabidopsis th	1.0	0.135	0.960	1.3e-22
DICTYBASE|DDB_G0289811	376	act10 "actin" [Dictyostelium d	1.0	0.135	0.941	1.6e-22
DICTYBASE|DDB_G0289663	376	act5 "actin" [Dictyostelium di	1.0	0.135	0.941	1.6e-22

TAIR|locus:2178128 ACT7 "actin 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 50/51 (98%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:   327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007010 "cytoskeleton organization" evidence=RCA;TAS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009845 "seed germination" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0051301 "cell division" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

DICTYBASE|DDB_G0275023 act22 "actin" [Dictyostelium discoideum (taxid:44689)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:   326 MKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376

GO:0006909 "phagocytosis" evidence=IEP

GO:0001891 "phagocytic cup" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0032009 "early phagosome" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0017022 "myosin binding" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IDA

FB|FBgn0000043 Act42A "Actin 42A" [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:   326 MKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005884 "actin filament" evidence=ISS;NAS

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

TAIR|locus:2040656 ACT1 "AT2G37620" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:   327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=TAS

GO:0048589 "developmental growth" evidence=IMP

GO:0048767 "root hair elongation" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2099302 ACT11 "AT3G12110" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:   327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005856 "cytoskeleton" evidence=ISS

TAIR|locus:2075160 ACT12 "AT3G46520" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:   327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=RCA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2084410 ACT3 "AT3G53750" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:   327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2148298 ACT4 "actin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:   327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

DICTYBASE|DDB_G0289811 act10 "actin" [Dictyostelium discoideum (taxid:44689)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 48/51 (94%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:   326 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376

GO:0006909 "phagocytosis" evidence=IEP

GO:0001891 "phagocytic cup" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0032009 "early phagosome" evidence=IDA

GO:0042331 "phototaxis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0006935 "chemotaxis" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0006897 "endocytosis" evidence=TAS

GO:0000910 "cytokinesis" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0031252 "cell leading edge" evidence=TAS

GO:0031143 "pseudopodium" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017022 "myosin binding" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

DICTYBASE|DDB_G0289663 act5 "actin" [Dictyostelium discoideum (taxid:44689)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 48/51 (94%), Positives = 50/51 (98%)

Query:     1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
             MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:   326 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376

GO:0006909 "phagocytosis" evidence=IEP

GO:0001891 "phagocytic cup" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0032009 "early phagosome" evidence=IDA

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042331 "phototaxis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0006935 "chemotaxis" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0006897 "endocytosis" evidence=TAS

GO:0000910 "cytokinesis" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0031252 "cell leading edge" evidence=TAS

GO:0031143 "pseudopodium" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017022 "myosin binding" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P04829	ACT3_BOMMO	No assigned EC number	0.9411	1.0	0.1356	N/A	no
O17320	ACT_CRAGI	No assigned EC number	0.9607	1.0	0.1356	N/A	no
P02580	ACT3_SOYBN	No assigned EC number	1.0	1.0	0.1356	no	no
P0CJ47	ACT3_ARATH	No assigned EC number	0.9607	1.0	0.1352	yes	no
P0CJ46	ACT1_ARATH	No assigned EC number	0.9607	1.0	0.1352	yes	no
P92176	ACT2_LUMTE	No assigned EC number	0.9411	1.0	0.1356	N/A	no
Q26065	ACT_PLAMG	No assigned EC number	0.9411	1.0	0.1356	N/A	no
P30163	ACT2_ONCVO	No assigned EC number	0.9411	1.0	0.1356	N/A	no
P30168	ACT6_SOLTU	No assigned EC number	0.9607	1.0	0.1352	N/A	no
O81221	ACT_GOSHI	No assigned EC number	0.9607	1.0	0.1352	N/A	no
P30167	ACT3_SOLTU	No assigned EC number	0.9607	1.0	0.1352	N/A	no
P30164	ACT1_PEA	No assigned EC number	0.9607	1.0	0.1356	N/A	no
P18602	ACT3_ARTSX	No assigned EC number	0.9411	1.0	0.1559	N/A	no
P41113	ACT3_PODCA	No assigned EC number	0.9411	1.0	0.1356	N/A	no
P46258	ACT3_PEA	No assigned EC number	0.9607	1.0	0.1352	N/A	no
P30161	ACT_COSCS	No assigned EC number	0.9803	1.0	0.1540	N/A	no
P23344	ACT2_DAUCA	No assigned EC number	1.0	1.0	0.1338	N/A	no
P53496	ACT11_ARATH	No assigned EC number	0.9607	1.0	0.1352	yes	no
Q553U6	ACT22_DICDI	No assigned EC number	0.9607	1.0	0.1356	yes	no
P53504	ACT1_SORBI	No assigned EC number	0.9607	1.0	0.1352	N/A	no
P53502	ACT_FUCDI	No assigned EC number	0.9803	1.0	0.136	N/A	no
P02572	ACT2_DROME	No assigned EC number	0.9607	1.0	0.1356	yes	no
Q10DV7	ACT1_ORYSJ	No assigned EC number	0.9607	1.0	0.1352	yes	no
O17503	ACTC_BRALA	No assigned EC number	0.9411	1.0	0.136	N/A	no
Q07903	ACTC_STRPU	No assigned EC number	0.9411	1.0	0.1356	yes	no
P30172	ACT12_SOLTU	No assigned EC number	0.9803	1.0	0.1428	N/A	no
P26197	ACT2_ABSGL	No assigned EC number	0.9607	1.0	0.1352	N/A	no
Q39758	ACT_FUCVE	No assigned EC number	0.9803	1.0	0.1356	N/A	no
P41112	ACT1_PODCA	No assigned EC number	0.9411	1.0	0.1356	N/A	no
O65315	ACT_COLSC	No assigned EC number	0.9607	1.0	0.1352	N/A	no
Q93129	ACTC_BRABE	No assigned EC number	0.9411	1.0	0.136	N/A	no
P20904	ACT_VOLCA	No assigned EC number	0.9607	1.0	0.1352	N/A	no
Q25010	ACT3A_HELAM	No assigned EC number	0.9411	1.0	0.1356	N/A	no
P53498	ACT_CHLRE	No assigned EC number	0.9607	1.0	0.1352	N/A	no
P53497	ACT12_ARATH	No assigned EC number	0.9607	1.0	0.1352	yes	no
Q05214	ACT1_TOBAC	No assigned EC number	0.9607	1.0	0.1352	N/A	no
P30171	ACT11_SOLTU	No assigned EC number	0.9607	1.0	0.1352	N/A	no
P30173	ACT13_SOLTU	No assigned EC number	0.9803	1.0	0.1352	N/A	no
P53492	ACT7_ARATH	No assigned EC number	0.9803	1.0	0.1352	yes	no
P53464	ACTM_HELTB	No assigned EC number	0.9411	1.0	0.1356	N/A	no
P26182	ACT_ACHBI	No assigned EC number	0.9607	1.0	0.1356	N/A	no
P53463	ACTM_HELER	No assigned EC number	0.9411	1.0	0.1356	N/A	no
Q10AZ4	ACT3_ORYSJ	No assigned EC number	1.0	1.0	0.1352	yes	no
A2XNS1	ACT3_ORYSI	No assigned EC number	1.0	1.0	0.1352	N/A	no
O65314	ACT_SCHDU	No assigned EC number	0.9607	1.0	0.1349	N/A	no
A2XLF2	ACT1_ORYSI	No assigned EC number	0.9607	1.0	0.1352	N/A	no
P07830	ACT1_DICDI	No assigned EC number	0.9411	1.0	0.1356	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ACT1	SubName- Full=Putative uncharacterized protein;; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells (By similarity) (378 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	ERF49	AP2/ERF domain-containing transcription factor (227 aa)							•		0.679
	grail3.0001032301	hypothetical protein (450 aa)							•		0.679
	estExt_fgenesh4_pg.C_LG_VI0537	hypothetical protein (301 aa)							•		0.679
	PPO2	polyphenol oxidase (582 aa)							•		0.510
	eugene3.00131305	ABC transporter family of the mitochondria family (762 aa)							•		0.510
	ERF71	AP2/ERF domain-containing transcription factor (234 aa)							•		0.510

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	51
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	2e-33
pfam00022	367	pfam00022, Actin, Actin	2e-31
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	3e-31
smart00268	373	smart00268, ACTIN, Actin	1e-26
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	2e-22
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	7e-21
PTZ00452	375	PTZ00452, PTZ00452, actin; Provisional	1e-20
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	3e-11

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score =  115 bits (290), Expect = 2e-33
 Identities = 46/51 (90%), Positives = 49/51 (96%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIKVVAPPERKYSVWIGGSIL+SL TFQQMW++K EYDESGPSIVHRKCF
Sbjct: 328 MKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378

Length = 378

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score =  110 bits (276), Expect = 2e-31
 Identities = 38/52 (73%), Positives = 45/52 (86%), Gaps = 1/52 (1%)

Query: 1   MKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           +K+K++APP ERKYS WIGGSILASL TFQQMW+SK EY+E G S+V RKCF
Sbjct: 316 VKVKIIAPPNERKYSAWIGGSILASLGTFQQMWVSKQEYEEHGSSVVERKCF 367

Length = 367

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score =  109 bits (274), Expect = 3e-31
 Identities = 48/51 (94%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 326 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376

Length = 376

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score = 97.7 bits (244), Expect = 1e-26
 Identities = 39/51 (76%), Positives = 46/51 (90%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           +K+KV+APPERKYSVW+GGSILASLSTF+ MWI+K EY+ESG  IV RKCF
Sbjct: 323 LKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEESGSQIVERKCF 373

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score = 86.2 bits (213), Expect = 2e-22
 Identities = 32/51 (62%), Positives = 43/51 (84%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           + I++ APPERK+S +IGGSILASL+TF+++WISK E+DE G  I+HRK F
Sbjct: 330 ITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380

Length = 380

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score = 82.5 bits (204), Expect = 7e-21
 Identities = 27/51 (52%), Positives = 35/51 (68%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
            K+ V+ PP+     W+G SILASL TFQQ+WI+K EY+E GP I+  K F
Sbjct: 394 WKVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444

Length = 444

>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional

 Score = 81.7 bits (201), Expect = 1e-20
 Identities = 34/51 (66%), Positives = 41/51 (80%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           +KI+V APP+R++S WIGGSI  +LST Q  WI + EYDE GPSIVHRKCF
Sbjct: 325 LKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375

Length = 375

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 22/48 (45%), Positives = 33/48 (68%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHR 48
           + + VV+ P ++Y+VW GGS+LAS   F+++  +K EYDE GPSI   
Sbjct: 360 IDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRY 407

Length = 414

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	51
PTZ00452	375	actin; Provisional	99.78
PTZ00466	380	actin-like protein; Provisional	99.76
PTZ00281	376	actin; Provisional	99.75
KOG0676	372	consensus Actin and related proteins [Cytoskeleton	99.75
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	99.73
PTZ00004	378	actin-2; Provisional	99.73
PTZ00280	414	Actin-related protein 3; Provisional	99.7
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	99.69
COG5277	444	Actin and related proteins [Cytoskeleton]	99.6
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	99.6
KOG0679	426	consensus Actin-related protein - Arp4p/Act3p [Cyt	99.55
KOG0680	400	consensus Actin-related protein - Arp6p [Cytoskele	99.37
KOG0681	645	consensus Actin-related protein - Arp5p [Cytoskele	99.17
KOG0677	389	consensus Actin-related protein Arp2/3 complex, su	98.99
KOG0678	415	consensus Actin-related protein Arp2/3 complex, su	98.98
KOG0797	618	consensus Actin-related protein [Cytoskeleton]	98.8

>PTZ00452 actin; Provisional

Probab=99.78  E-value=1.5e-19  Score=109.02  Aligned_cols=50  Identities=68%  Similarity=1.258  Sum_probs=47.8

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      +++|.++++|++++|+|||++|+++.|+++||||+||+|+|++++++||+
T Consensus       326 ~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        326 KIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             eeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            68899999999999999999999999999999999999999999999986

>PTZ00466 actin-like protein; Provisional

Probab=99.76  E-value=6.3e-19  Score=106.50  Aligned_cols=50  Identities=64%  Similarity=1.138  Sum_probs=47.7

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      +|+|..+++|++++|+|||++|+++.|+++||||+||+|+|++++++||+
T Consensus       331 ~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~  380 (380)
T PTZ00466        331 TIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF  380 (380)
T ss_pred             eEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence            58899999999999999999999999999999999999999999999885

>PTZ00281 actin; Provisional

Probab=99.75  E-value=1e-18  Score=105.21  Aligned_cols=50  Identities=94%  Similarity=1.541  Sum_probs=47.8

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      +++|..+++|.+++|+|||++|+++.|++.||||+||+|+|++++++||+
T Consensus       327 ~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~  376 (376)
T PTZ00281        327 KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF  376 (376)
T ss_pred             ceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence            58899999999999999999999999999999999999999999999985

>KOG0676 consensus Actin and related proteins [Cytoskeleton]

Probab=99.75  E-value=6.5e-19  Score=106.72  Aligned_cols=51  Identities=82%  Similarity=1.465  Sum_probs=48.8

Q ss_pred             CeeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         1 ~~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      ++++|+++|++.+++|+||||+|+++.|+++||||+||+|.|++++++|||
T Consensus       322 ~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f  372 (372)
T KOG0676|consen  322 IKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF  372 (372)
T ss_pred             cceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence            368999999999999999999999999999999999999999999999997

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=99.73  E-value=4.7e-19  Score=105.93  Aligned_cols=50  Identities=68%  Similarity=1.381  Sum_probs=45.5

Q ss_pred             eeEEEcCC-CceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPP-ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~-~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      +++|..++ +|.+++|+|||++|+++.|+++||||+||+|+|++++++||+
T Consensus       343 ~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~  393 (393)
T PF00022_consen  343 KVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF  393 (393)
T ss_dssp             TEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred             cceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence            58899988 999999999999999999999999999999999999999996

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>PTZ00004 actin-2; Provisional

Probab=99.73  E-value=3.6e-18  Score=102.83  Aligned_cols=50  Identities=90%  Similarity=1.514  Sum_probs=47.6

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      +++|..+++|++++|+|||++|+++.|++.||||+||+|+|++++.+||+
T Consensus       329 ~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~  378 (378)
T PTZ00004        329 KIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF  378 (378)
T ss_pred             cEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence            57888899999999999999999999999999999999999999999986

>PTZ00280 Actin-related protein 3; Provisional

Probab=99.70  E-value=8.4e-18  Score=102.08  Aligned_cols=48  Identities=46%  Similarity=0.871  Sum_probs=45.2

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeee
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK   49 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~   49 (51)
                      +|+|..++++++++|+|||++|+++.|+++||||+||+|+|+++++++
T Consensus       361 ~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~  408 (414)
T PTZ00280        361 DVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYN  408 (414)
T ss_pred             eEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChHheeec
Confidence            578888899999999999999999999999999999999999999875

>smart00268 ACTIN Actin

Probab=99.69  E-value=1.9e-17  Score=98.85  Aligned_cols=50  Identities=76%  Similarity=1.377  Sum_probs=47.4

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      +++|..++++.+++|.|||++|+++.|++.||||+||+|+|++++++||+
T Consensus       324 ~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~  373 (373)
T smart00268      324 KVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF  373 (373)
T ss_pred             eeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence            57888889999999999999999999999999999999999999999986

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=99.60  E-value=2.9e-16  Score=96.93  Aligned_cols=50  Identities=54%  Similarity=1.075  Sum_probs=47.1

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      .|.|..+++|.+.+|+|||++|+++.|+++||||+||+|+|+++++++++
T Consensus       395 ~v~v~~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~  444 (444)
T COG5277         395 KVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF  444 (444)
T ss_pred             ceeeecCCchhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence            57899999999999999999999999999999999999999999988764

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=99.60  E-value=6.5e-16  Score=92.32  Aligned_cols=47  Identities=83%  Similarity=1.427  Sum_probs=43.5

Q ss_pred             eEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeee
Q 040984            3 IKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK   49 (51)
Q Consensus         3 v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~   49 (51)
                      +++..+++|.+++|+|||++|+++.|++.||||+||+|+|++++++|
T Consensus       325 ~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k  371 (371)
T cd00012         325 VKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK  371 (371)
T ss_pred             EEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence            56777789999999999999999999999999999999999999875

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]

Probab=99.55  E-value=7.3e-16  Score=93.83  Aligned_cols=49  Identities=57%  Similarity=1.152  Sum_probs=42.9

Q ss_pred             eeEEEcCC---CceeeeeehhhhhccccccceeeeeHHHHhhcCC-cceeeec
Q 040984            2 KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGP-SIVHRKC   50 (51)
Q Consensus         2 ~v~v~~~~---~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~-~~~~~~~   50 (51)
                      +++|.+..   +|++++|+|||+||++++|+++||+|+||+|.|. ..+.+||
T Consensus       373 rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc  425 (426)
T KOG0679|consen  373 RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC  425 (426)
T ss_pred             eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence            46777654   7999999999999999999999999999999999 5566666

>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]

Probab=99.37  E-value=3.5e-13  Score=81.31  Aligned_cols=50  Identities=32%  Similarity=0.630  Sum_probs=46.6

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      .++|..|.||...+|.||+.++.++.|...||||+||+|+|++++.++++
T Consensus       350 ~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~  399 (400)
T KOG0680|consen  350 EVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF  399 (400)
T ss_pred             eEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence            47889999999999999999999999999999999999999999987753

>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]

Probab=99.17  E-value=4.6e-12  Score=80.09  Aligned_cols=48  Identities=27%  Similarity=0.491  Sum_probs=45.2

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeee
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK   49 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~   49 (51)
                      +|+|+.+.||.++||+||+.+|..++|...++||+||+|+|+.+++..
T Consensus       591 ~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh  638 (645)
T KOG0681|consen  591 SINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEH  638 (645)
T ss_pred             ceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHH
Confidence            689999999999999999999999999999999999999999988764

>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]

Probab=98.99  E-value=1.6e-10  Score=68.95  Aligned_cols=47  Identities=38%  Similarity=0.846  Sum_probs=41.9

Q ss_pred             eeEEEcCCCceeeeeehhhhhcc-ccccceeeeeHHHHhhcCCcceee
Q 040984            2 KIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR   48 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~-~~~~~~~~vtr~ey~E~G~~~~~~   48 (51)
                      +|+|.+||.+...+++||+++|. +.+-+++|+||+||+|.|.+.+.+
T Consensus       338 kiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k  385 (389)
T KOG0677|consen  338 KIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNK  385 (389)
T ss_pred             EEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHh
Confidence            68888999999999999999998 466778999999999999987654

>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]

Probab=98.98  E-value=9.8e-11  Score=71.06  Aligned_cols=47  Identities=36%  Similarity=0.632  Sum_probs=42.7

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceee
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHR   48 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~   48 (51)
                      +|+|+...-.++++|.||+++++.++|...+-||++|+|+|+++++.
T Consensus       361 dvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~  407 (415)
T KOG0678|consen  361 DVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRT  407 (415)
T ss_pred             eeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhChhhhhc
Confidence            46777777789999999999999999999999999999999999875

>KOG0797 consensus Actin-related protein [Cytoskeleton]

Probab=98.80  E-value=8.9e-10  Score=69.66  Aligned_cols=49  Identities=27%  Similarity=0.712  Sum_probs=45.2

Q ss_pred             eeEEEcCC---CceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeec
Q 040984            2 KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC   50 (51)
Q Consensus         2 ~v~v~~~~---~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~   50 (51)
                      .|.|+.+|   ||++-+|+||++++.+....++||++.||+-+|.++++.|+
T Consensus       563 ~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~  614 (618)
T KOG0797|consen  563 TVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKK  614 (618)
T ss_pred             ceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhcc
Confidence            47888877   89999999999999999999999999999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	51
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		5e-25
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		5e-25
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		6e-25
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		1e-24
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		2e-24
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		2e-24
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		2e-24
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		2e-24
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		2e-24
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		2e-24
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		2e-24
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		2e-24
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		2e-24
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		3e-24
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		3e-24
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		3e-24
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		3e-24
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		3e-24
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		3e-24
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		3e-24
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		3e-24
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		3e-24
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		3e-24
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		3e-24
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		3e-24
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		3e-24
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		6e-24
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		5e-23
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		5e-23
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		4e-22
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		4e-22
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		2e-21
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		2e-20
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		2e-20
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		4e-20
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		1e-19
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		1e-19
3b63_D	357	Actin Filament Model In The Extended Form Of Acroms		3e-17
3b63_F	357	Actin Filament Model In The Extended Form Of Acroms		6e-16
3qb0_A	498	Crystal Structure Of Actin-Related Protein Arp4 Fro		2e-07
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		3e-05
2p9k_B	394	Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta		2e-04
1k8k_B	394	Crystal Structure Of Arp23 COMPLEX Length = 394		2e-04

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  109 bits (272), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 375

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  109 bits (272), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 375

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score =  108 bits (271), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 318 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 368

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score =  107 bits (268), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 309 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 359

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 326 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 376

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 327 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 326 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 376

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 327 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 321 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 371

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score =  107 bits (266), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 320 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 370

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score =  107 bits (266), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 321 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 371

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 375

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKHEYDESGPSIVHRKCF 375

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKHEYDESGPSIVHRKCF 375

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 375

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 375

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 375

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 324 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 374

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 324 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 374

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct: 324 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 374

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score =  102 bits (255), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 49/51 (96%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MK+K++APPERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIVH KCF
Sbjct: 325 MKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 375

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  102 bits (255), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 49/51 (96%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MK+K++APPERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIVH KCF
Sbjct: 325 MKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 375

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/48 (89%), Positives = 47/48 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHR 48
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHR
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHR 372

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/48 (89%), Positives = 47/48 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHR 48
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHR
Sbjct: 326 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHR 373

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/47 (89%), Positives = 46/47 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVH 47
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVH
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 371

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 45/46 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 46
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIV
Sbjct: 320 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIV 365

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/46 (89%), Positives = 45/46 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 46
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIV
Sbjct: 319 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIV 364

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 45/46 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 46
           MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIV
Sbjct: 320 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 365

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 45/46 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 46
           MK+K++APPERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIV
Sbjct: 320 MKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIV 365

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 45/46 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 46
           MK+K++APPERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIV
Sbjct: 320 MKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIV 365

>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/40 (90%), Positives = 39/40 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 40
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE
Sbjct: 318 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 357

>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/38 (89%), Positives = 37/38 (97%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 38
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 320 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEY 357

>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 10  ERKYSVWIGGSILASLSTFQQMWISKGEYDESG 42
           ER+Y  W+GGSIL SL TF Q+W+ K EY+E G
Sbjct: 456 ERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVG 488

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV-HRKCF 51
           + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI  H   F
Sbjct: 363 IDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414

>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 2   KIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 48
           KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct: 341 KIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388

>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 2   KIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 48
           KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct: 341 KIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	51
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	4e-39
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	8e-35
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	2e-33
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	3e-33
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	2e-32

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score =  130 bits (328), Expect = 4e-39
 Identities = 46/51 (90%), Positives = 50/51 (98%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score =  120 bits (303), Expect = 8e-35
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 1   MKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51
           +K +++      ER+Y  W+GGSIL SL TF Q+W+ K EY+E G   +    F
Sbjct: 444 LKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score =  115 bits (291), Expect = 2e-33
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK-CF 51
           + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI      F
Sbjct: 363 IDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score =  115 bits (289), Expect = 3e-33
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLST-FQQMWISKGEYDESGPSIVHRKC 50
            KI++  PP RK+ V++GG++LA +       W+++ EY E G  ++ +  
Sbjct: 340 FKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score =  112 bits (283), Expect = 2e-32
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 50
           + + V++   ++ +VW GGS+LA    F     +K +Y+E G SI  R  
Sbjct: 372 VDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQ 421

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	51
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	99.78
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	99.75
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	99.72
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	99.71
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	99.7
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	99.65
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	99.63
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	80.25

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.78  E-value=2.3e-20  Score=113.00  Aligned_cols=49  Identities=33%  Similarity=0.639  Sum_probs=46.7

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeec
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC   50 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~   50 (51)
                      +|+|.++++|++++|+|||+||+++.|+++||||+||+|+|++++++++
T Consensus       373 ~vkv~~~~~r~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~  421 (427)
T 3dwl_A          373 DVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQ  421 (427)
T ss_dssp             CCCEECCTTCTTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCC
T ss_pred             eEEEecCCccccceecCceeeccccchhheeEEHHHHhhhChHhheecc
Confidence            5889999999999999999999999999999999999999999999874

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=99.75  E-value=8.3e-20  Score=112.39  Aligned_cols=50  Identities=28%  Similarity=0.686  Sum_probs=47.0

Q ss_pred             eeEEEcCC---CceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~---~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      +|+|++++   ||++++|+|||+||+++.|+++||||+||+|+|++++++||.
T Consensus       538 ~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          538 NVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA  590 (593)
T ss_dssp             CCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred             eEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence            47899887   899999999999999999999999999999999999999984

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2e-19  Score=110.93  Aligned_cols=50  Identities=42%  Similarity=0.945  Sum_probs=46.6

Q ss_pred             CeeEEEcC---CCceeeeeehhhhhccccccceeeeeHHHHhhcCC-cceeeec
Q 040984            1 MKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGP-SIVHRKC   50 (51)
Q Consensus         1 ~~v~v~~~---~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~-~~~~~~~   50 (51)
                      ++|+|.++   ++|.+++|+|||+||+++.|+++||||+||+|+|+ +++++||
T Consensus       444 ~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc  497 (498)
T 3qb0_A          444 LKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF  497 (498)
T ss_dssp             SCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred             CeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccC
Confidence            36889987   78999999999999999999999999999999999 8999987

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=99.71  E-value=6e-19  Score=105.26  Aligned_cols=49  Identities=39%  Similarity=0.745  Sum_probs=46.2

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeec
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC   50 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~   50 (51)
                      +|+|..+++|.+++|+|||++|+++.|+++||||+||+|+|++++++++
T Consensus       364 ~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~itk~ey~e~G~~~~~~~~  412 (418)
T 1k8k_A          364 DVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNP  412 (418)
T ss_dssp             CCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCC
T ss_pred             eEEEeCCCccccceeHhHHHHHcCccHhheEEEHHHHhhhCHHHHhhhc
Confidence            4788999999999999999999999999999999999999999999865

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=99.70  E-value=1.9e-18  Score=102.28  Aligned_cols=50  Identities=90%  Similarity=1.528  Sum_probs=44.1

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      +++|..+++|.+++|+||+++++++.|+++||||+||+|+|++++++||+
T Consensus       326 ~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~  375 (375)
T 2fxu_A          326 KIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF  375 (375)
T ss_dssp             CCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred             eEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence            47888899999999999999999999999999999999999999999985

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=99.65  E-value=9e-18  Score=106.08  Aligned_cols=51  Identities=25%  Similarity=0.741  Sum_probs=47.5

Q ss_pred             CeeEEEcCCCc---eeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984            1 MKIKVVAPPER---KYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF   51 (51)
Q Consensus         1 ~~v~v~~~~~~---~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~   51 (51)
                      ++|+|+++|++   ++++|+|||+||+++.|+++||||+||+|.|++++++||+
T Consensus       599 ~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~~k~~  652 (655)
T 4am6_A          599 FPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCI  652 (655)
T ss_dssp             CCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred             eeeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheEeccc
Confidence            46899999865   9999999999999999999999999999999999999974

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=99.63  E-value=2.4e-17  Score=98.34  Aligned_cols=47  Identities=34%  Similarity=0.809  Sum_probs=1.3

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccc-eeeeeHHHHhhcCCcceee
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQ-QMWISKGEYDESGPSIVHR   48 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~-~~~vtr~ey~E~G~~~~~~   48 (51)
                      +|+|..+++|.+++|+|||++++++.|+ ++||||+||+|+|++++++
T Consensus       341 ~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~  388 (394)
T 1k8k_B          341 KIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK  388 (394)
T ss_dssp             CC----------------------------------------------
T ss_pred             EEEEecCCCcceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence            5788888999999999999999999999 9999999999999999876

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=80.25  E-value=0.17  Score=29.18  Aligned_cols=26  Identities=15%  Similarity=0.210  Sum_probs=20.1

Q ss_pred             EEEcCCCceeeeeehhhhhccc-cccc
Q 040984            4 KVVAPPERKYSVWIGGSILASL-STFQ   29 (51)
Q Consensus         4 ~v~~~~~~~~~aW~G~s~~a~~-~~~~   29 (51)
                      +|..+++|.+++|.|+++++.. +.|+
T Consensus       304 ~v~~~~~p~~ava~Gaa~~a~~~~~~~  330 (344)
T 1jce_A          304 SVIRSEEPLTAVAKGAGMVLDKVNILK  330 (344)
T ss_dssp             CEEECSSTTTHHHHHHHHGGGCHHHHT
T ss_pred             CccccCChHHHHHHHHHHHHhChHHHH
Confidence            4555678999999999999974 4453

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	51
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	1e-29
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	1e-25

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (254), Expect = 1e-29
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV-HRKCF 51
           + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GPSI  H   F
Sbjct: 203 IDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 254

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.5 bits (224), Expect = 1e-25
 Identities = 42/47 (89%), Positives = 46/47 (97%)

Query: 1   MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVH 47
           MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVH
Sbjct: 179 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	51
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	99.81
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	99.73

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=9.7e-22  Score=110.92  Aligned_cols=50  Identities=40%  Similarity=0.786  Sum_probs=46.2

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCccee-eecC
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVH-RKCF   51 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~-~~~~   51 (51)
                      +|+|.++++|++++|+|||++|+++.|+++||||+||+|+|+++++ ++||
T Consensus       204 ~i~v~~~~~r~~s~W~Ggsila~l~~f~~~~Itk~eY~E~G~~iv~~rk~f  254 (258)
T d1k8ka2         204 DVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF  254 (258)
T ss_dssp             CCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCCCC
T ss_pred             eeeEecCCCCCceehHHHHHHHcCccHHhheecHHHHhhhChHHHhcCCCc
Confidence            4788999999999999999999999999999999999999999995 5675

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=2.2e-19  Score=99.51  Aligned_cols=46  Identities=89%  Similarity=1.470  Sum_probs=43.4

Q ss_pred             eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCccee
Q 040984            2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVH   47 (51)
Q Consensus         2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~   47 (51)
                      +++|..+++|++++|+|||++|+++.|+++||||+||+|+|++++|
T Consensus       180 ~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         180 KIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             CCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             ceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            4788999999999999999999999999999999999999999875