Citrus Sinensis ID: 041009

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAVIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLMVMMIKRMRKSIRRLSHIQAQDGRDYEPPIASVL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccccccHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccccHHHHHHHHHHccccccccccccccHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHEEEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
MAGSVNTLLElrqqdpliverptvnclsetPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVipdkcsdtdvdgrnplhLAAMRGHIDVLEELArakpdaasaRLIWGETILHLCVKHNQLEALKFLLENmgdsellnakddygMTILHLAVADKQIEAIKLLTTSTAIEVNavtangftAWDILAQSKRDTKDWDIGELLRRAgaisaqdlqlpaNELAVIQTNsvtshennqkhegkkdlkgtpwnldDWLEKKRNAAMVVASVISTMgfqaavdppqspqlaaSSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALigdpnssysnntTSAVLVWMAAVGIVSALVHISRLMVMMIKRMRKSIRRLSHiqaqdgrdyeppiasvl
Flexible Loop (DISEMBL)
magsvntllelrqqdplivERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNavtangftawdILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAVIQTNSvtshennqkhegkkdlkgtpWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLMVMMIKRMRKSIRRLshiqaqdgrdyeppiasvl
Low Complexity Region (SEG)
MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAVIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASSFVVWNTigflaslslillliidlpinrilFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLmvmmikrmrksirrLSHIQAQDGRDYEPPIASVL
Disordered region (IsUnstruct)
**************DPLIVERPTVNCLSETPLHVAALLGHEDFAKEILR****************LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAVI**********************TPWNLDDWLEKKRNAAMVVASVISTMGFQAAV*******LAASSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLMVMMIKRMRKSIR*********************
Disordered Region (DISOPRED)
MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAVIQTNSVT**********************DWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLMVMMIKRMR***********************V*
Disordered Region (DISEMBL)
MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAVIQTN***************DLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLMVMMIKRMRKSIRRLSHIQAQDGRDYEPPIASVL
Disordered Region (DISPRO)
MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAVIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLMVMMIKRMRKSIR*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAVIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLMVMMIKRMRKSIRRLSHIQAQDGRDYEPPIASVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.852	0.627	0.264	5e-21
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.831	0.678	0.247	2e-18
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.815	0.675	0.240	2e-16
Q5F478	990	Serine/threonine-protein	yes	no	0.407	0.178	0.329	2e-13
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.456	0.105	0.308	2e-12
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.453	0.105	0.311	8e-12
Q8N8A2	993	Serine/threonine-protein	no	no	0.516	0.225	0.305	2e-11
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.423	0.046	0.320	2e-11
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.423	0.047	0.320	2e-11
Q59H18	835	Serine/threonine-protein	no	no	0.375	0.195	0.290	3e-11

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  102 bits (255), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 183/416 (43%), Gaps = 46/416 (11%)

Query: 31  PLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
           PLH+AA+ GH    + +L     +++      ++ L  A+ +G+  +V  LL    +   
Sbjct: 167 PLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLE 226

Query: 91  DTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLL 150
            +  + +N LHLAA +GH++V++ L    P  A      G+T LH+ VK    E +K LL
Sbjct: 227 ISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLL 286

Query: 151 ENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQS 210
           +   D  ++   D    T LH+A   K+ E ++LL +      N +T +  TA DI    
Sbjct: 287 D--ADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGL 344

Query: 211 KRDTKDWDIGELLRRAGAISAQDLQLPANELAVIQT---NSV------TSHENNQKHEGK 261
               +   I E L R+GA+ A +L  P +EL    T   N V      T   N   H   
Sbjct: 345 PLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNIS 404

Query: 262 KDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASS----------F 311
           K+L+       + +    N+  VVA + +T+ F A    P       S+          F
Sbjct: 405 KELRKLHR---EGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIF 461

Query: 312 VVWNTIGFLASLSLILLLIIDLP------------INRILFAWILAWIMSLAIVAMAITY 359
            ++N +    SL+++++ I  +             IN+++  W+ +   S+A   +A +Y
Sbjct: 462 FIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLM--WLASMCTSVAF--LASSY 517

Query: 360 IVSIALIGDPNSSYSNNTTSAVLVWMAAV-GIVSALVHISRLMVMMIKRMRKSIRR 414
           IV    +G  N   +   T    V MA V G ++  V  S+    M K++ KS RR
Sbjct: 518 IV----VGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKV-KSARR 568

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 173/416 (41%), Gaps = 55/416 (13%)

Query: 32  LHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD 91
            HVAA  GH    KE+LR  P +    D+  +S L+ A+ + ++ IV A+L V P     
Sbjct: 98  FHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMI 157

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
              +G+  LH A   G + +++ L          +   G+T LH+ VK   LE ++ +L+
Sbjct: 158 VRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQ 217

Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
              D  +LN +D  G T LH+A    + +   LL T TAIEVNA+     TA D+  + +
Sbjct: 218 --ADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQ 275

Query: 212 RDTKDWDIGELLRRAGAISAQDLQLPANELAVIQTNSVTSHENN----QKHEGKKDLKGT 267
                 +I E L  AGA   + +       A+ +  S   HE      Q  +  + + G 
Sbjct: 276 YSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGI 335

Query: 268 PWNL----DDWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASS------------- 310
              L     + ++   N+  VVA + +++ F A  + P       S              
Sbjct: 336 AKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFR 395

Query: 311 -FVVWNTIGFLASLSLILLLIIDLPINRILFAW-------ILAWIMSLAIVAMAITY--- 359
            F + N      SL+++++ I        L AW       +++ +  L   A A T+   
Sbjct: 396 VFCLLNATSLFISLAVVVVQI-------TLVAWDTRAQKKVVSVVNKLMWAACACTFGAF 448

Query: 360 -IVSIALIGDPNSSYSNNTTSAVLVWMA-AVGIVSALVHISRLMVMMIKRMRKSIR 413
             ++ A++G  NS            WMA  + ++ A + +  L  M     R+  R
Sbjct: 449 LAIAFAVVGKGNS------------WMAITITLLGAPILVGTLASMCYFVFRQRFR 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 188/411 (45%), Gaps = 57/411 (13%)

Query: 32  LHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD 91
            H+AA  G+      ++   P ++   DS K++ALH A+ +G+  IV  LL    D  + 
Sbjct: 95  FHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAI 154

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
              +G+  LH AA  GH  ++++L   K    +     G+T LH+ VK    E +  L+E
Sbjct: 155 ARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME 214

Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
              D  L+N+ D+ G T LH+AV   + E ++ +     +   AV  +G TA DI  +  
Sbjct: 215 --ADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEK-- 270

Query: 212 RDTKDWDIGELLRRAGAISAQDLQLPANEL-------AVIQTNSVTSHENN----QKHEG 260
             T   +I  LL++ G  +A+ ++ PA ++        + +T S   HE +    Q    
Sbjct: 271 --TGLHEIVPLLQKIGMQNARSIK-PAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRT 327

Query: 261 KKDLKGTPWNLD----DWLEKKRNAAMVVASVISTMGFQAAVDPP--------------- 301
           +++++G    ++    + L    N+  +VA +I+T+ F A  + P               
Sbjct: 328 RREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYS 387

Query: 302 -----QSPQLAASSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWI---MSLAIV 353
                 +P+     FVV+++     SL+++++    + I R     ++A I   M +A +
Sbjct: 388 LGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACI 447

Query: 354 AMAITYI-VSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLMVM 403
            +++ ++ +S  ++G+     +        V + A+G   AL+ +S L  M
Sbjct: 448 MISVAFVSLSFVVVGEKEKPLA--------VGVTAIG---ALIMVSTLGTM 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 11/188 (5%)

Query: 27  LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI- 85
           L  T LH   + GHE+  + +L ++  I  + D+R  + LH A+ +G+   +  LLQ+  
Sbjct: 699 LGCTALHRGIMTGHEECVQMLLEKEVSILCK-DARGRTPLHFAAARGHATWLSELLQIAL 757

Query: 86  -PDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETI--LHLCVKHNQ 142
             + CS  D  G  PLH A   GH + +E L   K      R  +G +   LH C   N 
Sbjct: 758 SEEDCSLKDNQGYTPLHWACYNGHENCIEVLLEQK----FFRKFYGNSFSPLH-CAVIND 812

Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
            E    +L    D+ ++N KDD G T LH A     +E ++LL + +A +VNAV   G T
Sbjct: 813 HENCASMLIGAIDASIVNCKDDKGRTPLHAAAFADHVECLQLLLSHSA-QVNAVDHAGKT 871

Query: 203 AWDILAQS 210
           A  + AQ+
Sbjct: 872 ALMMAAQN 879

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 16/214 (7%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQ 83
           N   ETPLH+AA  GH + AK +L+ K ++ A+  D +  + LH A++ G+  +VK LL+
Sbjct: 434 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLE 491

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI-WGETILHLCVKHNQ 142
              +    T   G  PLH+AA  GH++ +  LA  + +A+ A +   G T LH+  K+ +
Sbjct: 492 NNANPNLATTA-GHTPLHIAAREGHVETV--LALLEKEASQACMTKKGFTPLHVAAKYGK 548

Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
           +   + LLE        NA    G+T LH+AV    ++ +KLL        ++   NG+T
Sbjct: 549 VRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYT 604

Query: 203 AWDILAQSKRDTKDWDIGE-LLRRAGAISAQDLQ 235
              I A+  +     ++   LL+  G+ +A+ +Q
Sbjct: 605 PLHIAAKQNQ----VEVARSLLQYGGSANAESVQ 634

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 18/215 (8%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ- 83
           N   ETPLH+AA  GH + AK +L Q    A        + LH A++ G+ G+VK LL+ 
Sbjct: 430 NVKVETPLHMAARAGHTEVAKYLL-QNKAKANAKAKDDQTPLHCAARIGHTGMVKLLLEN 488

Query: 84  -VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI-WGETILHLCVKHN 141
              P+  +     G  PLH AA  GH+D    LA  + +A+ A +   G T LH+  K+ 
Sbjct: 489 GASPNLATTA---GHTPLHTAAREGHVDTA--LALLEKEASQACMTKKGFTPLHVAAKYG 543

Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
           ++   + LLE+       NA    G+T LH+AV    ++ +KLL        ++   NG+
Sbjct: 544 KVRLAELLLEHDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGY 599

Query: 202 TAWDILAQSKRDTKDWDIGE-LLRRAGAISAQDLQ 235
           T   I A+  +     ++   LL+  G+ +A+ +Q
Sbjct: 600 TPLHIAAKQNQ----IEVARSLLQYGGSANAESVQ 630

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 114/252 (45%), Gaps = 28/252 (11%)

Query: 23  TVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82
           TV+ L  T LH   + GHE+  + +L Q+  I  + DSR  + LH A+ +G+   +  LL
Sbjct: 698 TVDILGCTALHRGIMTGHEECVQMLLEQEVSILCK-DSRGRTPLHYAAARGHATWLSELL 756

Query: 83  QVI--PDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGE--TILHLCV 138
           Q+    + C   D  G  PLH A   G+ + +E L   K      R   G   T LH  +
Sbjct: 757 QMALSEEDCCFKDNQGYTPLHWACYNGNENCIEVLLEQK----CFRKFIGNPFTPLHCAI 812

Query: 139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTA 198
            ++       LL  + DS +++ +DD G T LH A     +E ++LL   +A  VNAV  
Sbjct: 813 INDHGNCASLLLGAI-DSSIVSCRDDKGRTPLHAAAFADHVECLQLLLRHSA-PVNAVDN 870

Query: 199 NGFTAW------------DIL---AQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAV 243
           +G TA             DIL   AQ+    KD D+   L  A +   +   L    L  
Sbjct: 871 SGKTALMMAAENGQAGAVDILVNSAQADLTVKDKDLNTPLHLACSKGHEKCALLI--LDK 928

Query: 244 IQTNSVTSHENN 255
           IQ  S+ + +NN
Sbjct: 929 IQDESLINEKNN 940

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 19/203 (9%)

Query: 30  TPLHVAALLGHEDFAKEIL--RQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           T LHVAA  GH    K +L  R  P  A  L+    + LHIA +K  + +++ L++    
Sbjct: 367 TALHVAAHCGHYRVTKLLLDKRANPN-ARALNG--FTPLHIACKKNRIKVMELLVKYGAS 423

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELAR--AKPDAASARLIWGETILHLCVKHNQLEA 145
             + T+  G  P+H+AA  GH++++  L +  A PD  + R   GET LH+  +  Q+E 
Sbjct: 424 IQAITE-SGLTPIHVAAFMGHLNIVLLLLQNGASPDVTNIR---GETALHMAARAGQVEV 479

Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD 205
           ++ LL N     L++A+     T LH+A    + E ++LL    A   +A T NG+T   
Sbjct: 480 VRCLLRN---GALVDARAREEQTPLHIASRLGKTEIVQLLLQHMA-HPDAATTNGYTPLH 535

Query: 206 ILAQSKRDTKDWDIGELLRRAGA 228
           I A+  +     D+  +L  AGA
Sbjct: 536 ISAREGQ----VDVASVLLEAGA 554

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 19/203 (9%)

Query: 30  TPLHVAALLGHEDFAKEIL--RQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           T LHVAA  GH    K +L  R  P  A  L+    + LHIA +K  + +++ L++    
Sbjct: 367 TALHVAAHCGHYRVTKLLLDKRANPN-ARALNG--FTPLHIACKKNRIKVMELLVKYGAS 423

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELAR--AKPDAASARLIWGETILHLCVKHNQLEA 145
             + T+  G  P+H+AA  GH++++  L +  A PD  + R   GET LH+  +  Q+E 
Sbjct: 424 IQAITE-SGLTPIHVAAFMGHLNIVLLLLQNGASPDVTNIR---GETALHMAARAGQVEV 479

Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD 205
           ++ LL N     L++A+     T LH+A    + E ++LL    A   +A T NG+T   
Sbjct: 480 VRCLLRN---GALVDARAREEQTPLHIASRLGKTEIVQLLLQHMA-HPDAATTNGYTPLH 535

Query: 206 ILAQSKRDTKDWDIGELLRRAGA 228
           I A+  +     D+  +L  AGA
Sbjct: 536 ISAREGQ----VDVASVLLEAGA 554

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q59H18|TNI3K_HUMAN Serine/threonine-protein kinase TNNI3K OS=Homo sapiens GN=TNNI3K PE=1 SV=3

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 23/186 (12%)

Query: 30  TPLHVAALLGHEDFAKEILR--QKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           TPLH+AA  GHE   + +L+      ++ E+  R    LH+AS KG++ I K L++    
Sbjct: 169 TPLHIAAYYGHEQVTRLLLKFGADVNVSGEVGDR---PLHLASAKGFLNIAKLLME---- 221

Query: 88  KCSDTDVDGRN-----PLHLAAMRGHIDVLEELARA----KPDAASARLIWGETILHLCV 138
           + S  DV+ ++     PLH  +  GH D+++ L ++    +P   +   I+G+T LHL  
Sbjct: 222 EGSKADVNAQDNEDHVPLHFCSRFGHHDIVKYLLQSDLEVQPHVVN---IYGDTPLHLAC 278

Query: 139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA-DKQIEAIKLLTTSTAIEVNAVT 197
            + + E  K +++  G +E L  ++ +  T  H A    K I+ +K L     I +N   
Sbjct: 279 YNGKFEVAKEIIQISG-TESLTKENIFSETAFHSACTYGKSIDLVKFLLDQNVININHQG 337

Query: 198 ANGFTA 203
            +G T 
Sbjct: 338 RDGHTG 343

May play a role in cardiac physiology.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
343887300	469	ankyrin repeat family protein [Citrus un	0.974	0.901	0.484	1e-104
343887301	470	Ankyrin repeat family protein [Citrus un	0.940	0.868	0.493	1e-98
343887299	477	ankyrin repeat family protein [Citrus un	0.910	0.828	0.475	2e-96
343887311	473	ankyrin repeat family protein [Citrus un	0.917	0.841	0.472	1e-95
359475962	486	PREDICTED: ankyrin repeat-containing pro	0.822	0.734	0.529	3e-95
359475964	491	PREDICTED: ankyrin repeat-containing pro	0.870	0.769	0.476	1e-88
296081692	444	unnamed protein product [Vitis vinifera]	0.847	0.828	0.5	1e-86
224088778	491	predicted protein [Populus trichocarpa]	0.868	0.767	0.449	2e-83
224092119	471	predicted protein [Populus trichocarpa]	0.788	0.726	0.44	2e-76
359484291	533	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.942	0.767	0.389	7e-76

>gi|343887300|dbj|BAK61846.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/466 (48%), Positives = 294/466 (63%), Gaps = 43/466 (9%)

Query: 3   GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK 62
           GSV +LL+L Q+D L+++R  V+C SETPLH+A++LGHE F +EIL +KP +A ELDSR+
Sbjct: 12  GSVESLLKLLQEDALLLDRSMVSCYSETPLHIASMLGHESFVREILSRKPELAGELDSRR 71

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
           SSALH A+ KG++GIV  LL V P  C   D DG+NPLH+AA++GH++VL EL + +P A
Sbjct: 72  SSALHFAAAKGHLGIVLKLLSVNPKMCCACDRDGKNPLHVAAIKGHVNVLRELVQVRPKA 131

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
               +  GETILH CV +NQLE LK L+E + D E +N+KDD G TILHLAV DKQ+EA+
Sbjct: 132 CRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILHLAVIDKQVEAV 191

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELA 242
           K LT ST IEVNAV ANGFTA DILAQ K D     IGELLR AGA S ++ + PA+   
Sbjct: 192 KFLTGSTTIEVNAVNANGFTALDILAQRKLDMNS-TIGELLRCAGARSLKETREPASGTT 250

Query: 243 VIQTNSV-TSHENNQKHEGK-KDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDP 300
             +T S+ TSH  +  ++G+ +  K      D W EKKRN  MVVAS+I+TM FQA ++P
Sbjct: 251 KTRTGSIITSHSGDPSNQGRERPEKARKKQEDKWSEKKRNTLMVVASLIATMAFQAGLNP 310

Query: 301 P------QSPQLAASS------------------FVVWNTIGFLASLSLILLLIIDLPI- 335
           P       SP+  AS                   F  +NT GF+ASLS+ILL I  +P  
Sbjct: 311 PGGVWQDDSPKNDASRHQAGCSVMLTQDEISYNLFFGFNTTGFVASLSIILLFISGIPFF 370

Query: 336 NRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYS----NNTTSAVLVWMAAVGIV 391
            R  F WIL  IM +AI AMA+ Y+   A++G  NS  S      +T  +L W+  +GI+
Sbjct: 371 KRRFFMWILTVIMWVAISAMALAYL--FAILGITNSGNSMIPWYASTIVLLGWIGFIGIL 428

Query: 392 SALVHISRLMVMMIKR----MRKSIRRLSHIQAQDGRDYEPPIASV 433
             L HI RL+V MIK     M++S R+ S   AQ  R    PI +V
Sbjct: 429 -ILAHIVRLIVKMIKFFLKLMKRSPRQPSSSDAQVAR----PINTV 469

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887301|dbj|BAK61847.1| Ankyrin repeat family protein [Citrus unshiu]

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 219/444 (49%), Positives = 288/444 (64%), Gaps = 36/444 (8%)

Query: 3   GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK 62
           GSV +LL+L Q+D L+++R  V+C SETPLHVA++LGHE+F +EIL +KP +A ELDSR+
Sbjct: 12  GSVESLLKLLQEDALLLDRSMVSCYSETPLHVASMLGHENFVREILSRKPELAGELDSRR 71

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
           SSALH+A+ KG++GIV  L+ V P  C   D DG+NPLH+AA++GH++VL EL + +P A
Sbjct: 72  SSALHLAAAKGHLGIVLKLVSVNPKMCCACDRDGKNPLHVAAIKGHVNVLRELVQVRPKA 131

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
               +  GETILH CV +NQLE LK L+E + D E +N+KDD G TILHLAV DKQ+E I
Sbjct: 132 CRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILHLAVIDKQVETI 191

Query: 183 KLLTTS-TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANEL 241
           K LT S T +EVNAV ANGFTA DILA+ K D  +W IGELLR AGA S ++ + P+  +
Sbjct: 192 KFLTDSCTTLEVNAVNANGFTALDILARRKLDV-NWTIGELLRCAGARSQKETREPSPAI 250

Query: 242 AVIQTNS-VTSHENNQKHEGK-KDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVD 299
               T S +TSH ++  ++G+ +  K      D+W EKKRNA MVVAS+I+TM FQAA++
Sbjct: 251 TQTPTGSIITSHSDDPSNQGRERPEKVRKKQEDEWSEKKRNALMVVASLIATMAFQAALN 310

Query: 300 PP------------QSPQLAASS------------FVVWNTIGFLASLSLILLLIIDLP- 334
           PP             SP  A SS            F  +NT GF+ASLS+ILLLI  +P 
Sbjct: 311 PPGGVWQDDSQANDTSPHDAGSSIMLTNVESVYYLFFGFNTTGFVASLSIILLLISGIPF 370

Query: 335 INRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLV----WMAAVGI 390
             R  F WIL  I  +AI AMA+TY+  +  +G  NS  S       L     W+  +GI
Sbjct: 371 FKRRFFMWILTVITWVAISAMALTYLFGV--VGITNSGNSVAPQCGFLYVMDGWIGLIGI 428

Query: 391 VSALVHISRLMVMMIKRMRKSIRR 414
           +  L HI RLMV MIK + K ++R
Sbjct: 429 L-ILAHIVRLMVKMIKFLLKLMKR 451

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887299|dbj|BAK61845.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 219/461 (47%), Positives = 281/461 (60%), Gaps = 66/461 (14%)

Query: 3   GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK 62
           G++ TLL+L +QDPLI+++   N   ETPLHVAAL GH  FAKEILR+ P +A ELDSR 
Sbjct: 15  GNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRG 74

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
           SS LH+A+QKGYV IVK LLQV PD C   DVDGRNPLH+AAM+G I VL EL RA+P A
Sbjct: 75  SSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFA 134

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
           A +  IW ET+LHLCVKHNQ EALKFL+  M D + LNAKDDYGM+ILHLAVADKQIE I
Sbjct: 135 AYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETI 194

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQ--LPANE 240
             L  +T +EVNA+  +G+TA DILAQS+RD KD DI + LR AGA  A ++Q  L  N 
Sbjct: 195 NYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAIEIQSSLNRNS 254

Query: 241 LAVIQ--------TNSVTSHENNQKHEGKKDLKGTPWNL----------DDWLEKKRNAA 282
            ++ +        +NS+  H+          LK  P             +DWL +KR+A 
Sbjct: 255 TSIGRSVRNNRAVSNSIIPHDQ---------LKALPQECLINLQQKNKTEDWLTRKRDAL 305

Query: 283 MVVASVISTMGFQAAVDPP---------------------QSPQLAA-----------SS 310
           MVVAS+I+TM FQA V+PP                     ++ Q              ++
Sbjct: 306 MVVASLIATMAFQAGVNPPGGVWQDDFPGPGDGSQENSTAEAHQAGTAIIAYKYRSRYAN 365

Query: 311 FVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPN 370
           ++ +NT GF++SLS+ILLLI  LP  R  F W+L   + +AI +MA+TY VSI L+  P 
Sbjct: 366 YLAFNTAGFISSLSIILLLITGLPFKRRFFMWVLTVTVWIAITSMALTYRVSI-LVFTPK 424

Query: 371 SSYSNNT---TSAVLVWMAAVGIVSALVHISRLMVMMIKRM 408
                 T      V VW A +G++  L H  RL+ +  K+ 
Sbjct: 425 KDERTVTRVVEYGVKVWSAVMGLL-LLGHTIRLLAIFFKKF 464

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887311|dbj|BAK61857.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 207/438 (47%), Positives = 280/438 (63%), Gaps = 40/438 (9%)

Query: 3   GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK 62
           GSV +L+ L Q+D L+++R  V+C +ETPLH+A++LGH DF +EI+ QKP +A ELDSRK
Sbjct: 12  GSVASLIHLLQEDALVLDRFMVSCHAETPLHIASMLGHVDFVQEIVSQKPELAGELDSRK 71

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
           +S LH+AS KGY+ IVK L+ V P+ C   D DGRNPLH+AA++GH++VL EL + +P A
Sbjct: 72  ASPLHVASAKGYLVIVKKLVSVNPEMCYVRDRDGRNPLHVAAIKGHVNVLRELVQVRPQA 131

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
           A   +  GETILH CV++NQLE++KFLL+ + D E +N K++ G TILHLAVADKQ EAI
Sbjct: 132 ARMLMDRGETILHACVRYNQLESMKFLLDILSDREFVNYKNNDGNTILHLAVADKQTEAI 191

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELA 242
           K+LTTST IEVNA+ ANG  A DIL Q K D KD +I ELL RA AISA+D      +  
Sbjct: 192 KVLTTSTTIEVNALNANGLAALDILPQIKGDEKDSEIIELLGRASAISARDEGKKKKKKK 251

Query: 243 VIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPP- 301
               +   SH NN     + +         DWL KKR+  MVVAS+I+TM FQ   +PP 
Sbjct: 252 TKTPSK--SHVNNDNLARRDEY--------DWLRKKRSTLMVVASLIATMAFQVGANPPG 301

Query: 302 -----------QSPQLAASS-------------FVVWNTIGFLASLSLILLLIIDLPI-N 336
                      ++P   A S             F+  N+I F+ASLS+ILLL+  LPI N
Sbjct: 302 GLWQDNFVGDEKTPAHNAGSSILADLSPEAYGHFLTSNSIAFVASLSIILLLVSGLPIRN 361

Query: 337 RILFAWILAWIMSLAIVAMAITYIVSIALIGDPN--SSYSNNTTSAVLVWMAAVGIVSAL 394
           RIL  W+L  IM +AI A+A+TY++S++     +  ++Y++     +LVW+    I+   
Sbjct: 362 RILM-WVLMVIMWVAITAIAVTYLLSMSAFTPAHEANTYASVIGYVILVWIGLCAIL-FF 419

Query: 395 VHISRLMVMMIKRMRKSI 412
            H  RLMV +IK +RK I
Sbjct: 420 GHTIRLMVRIIKFIRKLI 437

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475962|ref|XP_002279591.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 209/395 (52%), Positives = 260/395 (65%), Gaps = 38/395 (9%)

Query: 3   GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK 62
           GSV +L EL  +DPLI++R  +N  +ETPLH+AALLGH DFAKEIL QKP +A ELD R+
Sbjct: 9   GSVTSLYELLLKDPLIIDRVMLN-YTETPLHIAALLGHADFAKEILLQKPELAAELDYRR 67

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
           SS LH+A+ KGY+ IVK LL V P+ C   D DGRNP+HLAAMRGH+ VL+EL +AKP A
Sbjct: 68  SSPLHLAAAKGYIEIVKELLFVNPEMCLACDRDGRNPVHLAAMRGHVHVLKELVQAKPHA 127

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
             A L  GETILHLCVKHNQLEALK L+E     E+++AKDD G TILHLAVADKQ+E I
Sbjct: 128 TWAALPRGETILHLCVKHNQLEALKLLVETADAHEIMSAKDDNGFTILHLAVADKQLETI 187

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELA 242
             L +ST+IEVNAV  NG TA DILAQS+RD +D +I ELLR  GA  A+++   A E  
Sbjct: 188 NYLLSSTSIEVNAVNLNGCTASDILAQSRRDVQDMEISELLRHVGAAKAKNISFSAYEFG 247

Query: 243 VIQTNSVTSHENNQKHEG---KKDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVD 299
             +T  ++S  ++Q        K+        DDWL+K+++A MVVAS+I+TM FQA V 
Sbjct: 248 SSRTRGMSSDADDQNRVPCPIGKNCNEFNKKKDDWLDKQQSALMVVASLIATMAFQAGVS 307

Query: 300 PP----------------------QSPQLAA------------SSFVVWNTIGFLASLSL 325
           PP                      ++P  A             +SF+V NTI FLASLS+
Sbjct: 308 PPGDVWGDNSKYDPEGSPAPAPSSETPHTAGLSIMADNNPDAHTSFLVTNTISFLASLSI 367

Query: 326 ILLLIIDLPINRILFAWILAWIMSLAIVAMAITYI 360
           ILLLI  LPINR LF WIL  IM +A+ AM +TY+
Sbjct: 368 ILLLISGLPINRRLFVWILMVIMWIAVTAMTLTYL 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475964|ref|XP_002279612.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 202/424 (47%), Positives = 261/424 (61%), Gaps = 46/424 (10%)

Query: 1   MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDS 60
           M GSV +L +L QQD LI++R  V+C++ETPLHVAA+LGH DF KEIL  KP +A ELDS
Sbjct: 10  MEGSVASLQQLLQQDRLILDRVIVDCITETPLHVAAMLGHTDFVKEILCLKPELARELDS 69

Query: 61  RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKP 120
           R  S LH+AS KGY  +VKA L V PD C   D  GRNPLHLAAM+G  DVL+EL RA+P
Sbjct: 70  RGFSPLHLASAKGYTEVVKAFLLVDPDMCFACDRYGRNPLHLAAMKGRFDVLKELVRARP 129

Query: 121 DAASARLIWGETILHLCVKHNQLEALKFLLENMGD-SELLNAKDDYGMTILHLAVADKQI 179
            AA AR   GETILHLCVK NQLEALKFL+E M D ++L+N +D+ G TILHLAVADKQI
Sbjct: 130 HAARARAERGETILHLCVKQNQLEALKFLVETMDDHNDLVNTRDNNGFTILHLAVADKQI 189

Query: 180 EAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPAN 239
           E +  L ++T +EVNA+  +G TA DIL    RD  D DIGE  R  GA+ A +  LP +
Sbjct: 190 ETVNYLLSNTRVEVNALNTSGLTALDILVHGLRDVGDLDIGEAFRGTGAMRAMNTHLPNH 249

Query: 240 ELAVIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVD 299
              V+Q  S          EG + +K      + WL +KR+A MVVAS+I+TM FQAAV+
Sbjct: 250 HPQVLQLTS----------EGDRSMKSK--GKEHWLTRKRDALMVVASLIATMAFQAAVN 297

Query: 300 PP------------QSPQLAASS-----------------FVVWNTIGFLASLSLILLLI 330
           PP            Q  Q   S                  ++ +NT GF++SLS+IL+LI
Sbjct: 298 PPGGAWQDNSTQNSQDTQAGKSHAAGKAIMADSNEEYYRLYLSYNTTGFISSLSIILMLI 357

Query: 331 IDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNS---SYSNNTTSAVLVWMAA 387
             LP    LF W+L  ++ +AI +MA+TY  ++  +  P+S   + +N     V VW   
Sbjct: 358 TGLPFTHRLFMWMLTVVVWVAITSMALTYRTAMTFL-TPDSAEAAVTNIIVVGVAVWCGV 416

Query: 388 VGIV 391
           + +V
Sbjct: 417 MALV 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081692|emb|CBI20697.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 204/408 (50%), Positives = 257/408 (62%), Gaps = 40/408 (9%)

Query: 36  ALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD 95
           ALLGH DFAKEIL QKP +A ELD R+SS LH+A+ KGY+ IVK LL V P+ C   D D
Sbjct: 14  ALLGHADFAKEILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRD 73

Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
           GRNP+HLAAMRGH+ VL+EL +AKP A  A L  GETILHLCVKHNQLEALK L+E    
Sbjct: 74  GRNPVHLAAMRGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADA 133

Query: 156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTK 215
            E+++AKDD G TILHLAVADKQ+E I  L +ST+IEVNAV  NG TA DILAQS+RD +
Sbjct: 134 HEIMSAKDDNGFTILHLAVADKQLETINYLLSSTSIEVNAVNLNGCTASDILAQSRRDVQ 193

Query: 216 DWDIGELLRRAGAISAQDLQLPANELAVIQTNSVTSHENNQKHEG---KKDLKGTPWNLD 272
           D +I ELLR  GA  A+++   A E    +T  ++S  ++Q        K+        D
Sbjct: 194 DMEISELLRHVGAAKAKNISFSAYEFGSSRTRGMSSDADDQNRVPCPIGKNCNEFNKKKD 253

Query: 273 DWLEKKRNAAMVVASVISTMGFQAAVDPP----------------------QSPQLAA-- 308
           DWL+K+++A MVVAS+I+TM FQA V PP                      ++P  A   
Sbjct: 254 DWLDKQQSALMVVASLIATMAFQAGVSPPGDVWGDNSKYDPEGSPAPAPSSETPHTAGLS 313

Query: 309 ----------SSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAIT 358
                     +SF+V NTI FLASLS+ILLLI  LPINR LF WIL  IM +A+ AM +T
Sbjct: 314 IMADNNPDAHTSFLVTNTISFLASLSIILLLISGLPINRRLFVWILMVIMWIAVTAMTLT 373

Query: 359 YIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIVSALVHISRLMVMMIK 406
           Y+VSI  +  PN    + +    +V  A   +V+ L  +  L++ MIK
Sbjct: 374 YLVSITAL-TPNHELDHLSCMITVVAYAWTCLVALL--LVDLILKMIK 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088778|ref|XP_002308536.1| predicted protein [Populus trichocarpa] gi|222854512|gb|EEE92059.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/416 (44%), Positives = 255/416 (61%), Gaps = 39/416 (9%)

Query: 3   GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK 62
           G+V +LL L Q+D L ++R  V C +ETPLH+AA+LGH +F +EIL +KP +  ELD  +
Sbjct: 53  GNVTSLLILLQEDKLFLDRCAVTCPAETPLHIAAMLGHLEFTREILWRKPDLVNELDLHR 112

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
           SS LH+A+  G++ +V+ LL V  D C   D +  NPLH+A ++G IDVL+EL +AKPDA
Sbjct: 113 SSPLHLATANGHLEVVRVLLLVDADLCLVKDRNRWNPLHVAVIKGRIDVLKELVQAKPDA 172

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLE-NMGDSELLNAKDDYGMTILHLAVADKQIEA 181
              R   GETILHLCVKH QLEALKFL+   + D+E +N++DD G TILHLAVAD++IE 
Sbjct: 173 IRTRGQRGETILHLCVKHYQLEALKFLVGITIADTEFVNSEDDDGFTILHLAVADREIEV 232

Query: 182 IKLLTTSTAIEVNAVTANGFTAWDI-LAQSKRDTKDWDIGELLRRAGAISAQDLQLPANE 240
           I  L + + I+VNA+ ANGFTA DI LAQ +R+ KD DI   LR  GAIS++D+    + 
Sbjct: 233 INYLISESPIQVNALNANGFTALDIVLAQGRRNIKDIDIQNTLREGGAISSKDMPSTMHG 292

Query: 241 LAVIQ-TNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVD 299
           L  I+  NS T +E N             W   +WLE++RNA MVVAS+I+TM FQA + 
Sbjct: 293 LDAIRPNNSTTLNERN------------CWRKKNWLEERRNALMVVASLIATMAFQAGIS 340

Query: 300 PP---------QSPQLAASS---------------FVVWNTIGFLASLSLILLLIIDLPI 335
           PP         Q P  +  +               FV +NT  FLAS+S+I+LLI  LP 
Sbjct: 341 PPNGNWQEDRQQPPSQSHEAGRSIMADKMPDDFAFFVGYNTTSFLASISVIILLISGLPF 400

Query: 336 NRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNSSYSNNTTSAVLVWMAAVGIV 391
              +F WIL  IM +A++A   TY +SI+ +       +     A +V+   +GIV
Sbjct: 401 KWRIFTWILMIIMWIAVIATIWTYYISISCLSSRRGESTTAKAGAAVVFYGVMGIV 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092119|ref|XP_002309480.1| predicted protein [Populus trichocarpa] gi|222855456|gb|EEE93003.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/375 (44%), Positives = 230/375 (61%), Gaps = 33/375 (8%)

Query: 18  IVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGI 77
           +++    +C +ETPLH++A+LGH +F ++IL +KP  A+ELD   SS LH+A+  G++ +
Sbjct: 41  VLDGCATDCFTETPLHISAMLGHLEFTRKILCRKPEFAKELDFLGSSPLHLATANGHLEV 100

Query: 78  VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC 137
           V+ALL V PD C   + DGRNPLH+A ++G +DVL+EL + KP+A   R   GET+LHLC
Sbjct: 101 VRALLSVNPDMCFAQNRDGRNPLHIAVIKGRVDVLKELVQNKPEAVLHRTARGETVLHLC 160

Query: 138 VKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVT 197
           VKH QLEALK L+E + D   +N+KD+ G T+LHLAVADK+IE I  L   T IEVNA+ 
Sbjct: 161 VKHFQLEALKLLVETIKDYGFINSKDEDGSTVLHLAVADKEIEIISFLIMKTEIEVNAIN 220

Query: 198 ANGFTAWDI-LAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAVIQTNSVTSHENN- 255
           A+GFT  DI LAQ +R+ KD D+ + L + GA SA+DL    + L  +   ++ S ++  
Sbjct: 221 ASGFTVLDIALAQGRRNWKDVDVQDSLHQVGASSAKDLSSTMHRLEAVGAVNLRSEDHFT 280

Query: 256 --QKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPP-----QSPQLAA 308
             Q    +K  +   + L +    KRNA M+VAS+I+TM FQA + PP     +  Q A 
Sbjct: 281 SLQSRLKRKYQRRQSYGLGE----KRNALMIVASLIATMAFQAGISPPGGLWQEDSQGAT 336

Query: 309 SS--------------------FVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIM 348
           S+                    FV+ N+I FLASLS+ILLLI  LP       WIL  IM
Sbjct: 337 SNEHHEAGRSIMADKLPAAYNKFVMHNSIAFLASLSVILLLISGLPFRWRFSMWILTAIM 396

Query: 349 SLAIVAMAITYIVSI 363
            +AI     TY++SI
Sbjct: 397 WVAITESTFTYLISI 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484291|ref|XP_002280512.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 185/475 (38%), Positives = 249/475 (52%), Gaps = 66/475 (13%)

Query: 3   GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK 62
           GSVN+L  L  +DPL + R  V C +ETPLHVAA+LGH DFA  +L  KP +   LD R 
Sbjct: 29  GSVNSLKRLMAKDPLTLARAAVTCFNETPLHVAAMLGHLDFASYLLTHKPDMTMALDLRG 88

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
            S LH+AS  GYV  V  LL   PD C   D DGR PLHLA M+G ++V   L  A+P  
Sbjct: 89  RSPLHLASANGYVERVNILLSSNPDACLMRDEDGRTPLHLAVMKGEVEVTRMLVGARPQV 148

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
              +L  GETILH  VK N+L ALK L+E   D E +N+KDDYG T+LH A A KQ E  
Sbjct: 149 TRYKLDQGETILHSAVKQNRLGALKLLVELARDXEFVNSKDDYGNTVLHTATALKQYETA 208

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDL-QLPANEL 241
           K L     +EVNAV  NGFTA DI+    RD K  +I E L +AGA+S+++L  LP    
Sbjct: 209 KYLVKRPEMEVNAVNGNGFTALDIIQHMPRDLKGMEIRESLAKAGALSSRNLPALPGIGH 268

Query: 242 AVIQTNSVTSHENN--------------QKHEGKKDLKGTPW----NLDDWLEKKRNAAM 283
             +  + +T    N               + +  + L+G       N  +W  KKRNA M
Sbjct: 269 EFMGESGITMVIENPQLSPPPPLPAAVLTEAKAPRPLQGREMKIRENKKEWTMKKRNALM 328

Query: 284 VVASVISTMGFQAAVDPPQS------------PQLAASS------------FVVWNTIGF 319
           V A++I+ M FQAAV+PP                LA +S            F+  N + F
Sbjct: 329 VAATLIAGMAFQAAVNPPGGVWGEEKDGSNGKKMLAGTSIMAHNYPEGYRLFMACNAVYF 388

Query: 320 LASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIALIGDPNS-----SYS 374
           +ASLS++ L++  + + R +  W+L  IMS+ +  MA+TY+ SI  I   N      S +
Sbjct: 389 VASLSIVFLVVSGVLVKRRILMWLLMIIMSITLTFMALTYMFSILAIAPTNDDTEAMSPT 448

Query: 375 NNTTSA-----------------VLVWMAAVGIVSALVHISRLMVMMIKRMRKSI 412
           NN T A                 +LVW + +  V ALVHI R ++  + ++ K+I
Sbjct: 449 NNDTEAMLLGHKVPDITYVVGVSLLVWFSLLAFV-ALVHIIRFLIWCVCKVGKAI 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.665	0.649	0.287	8.5e-31
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.582	0.572	0.354	4.9e-30
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.658	0.671	0.292	1.9e-26
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.656	0.623	0.291	6.9e-26
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.617	0.441	0.275	2.5e-22
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.665	0.662	0.295	4.4e-22
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.700	0.705	0.277	2e-21
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.640	0.471	0.284	1.2e-20
TAIR|locus:2012532	441	AT1G14480 "AT1G14480" [Arabido	0.656	0.646	0.279	3.2e-20
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.608	0.496	0.282	6e-19

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 8.5e-31, Sum P(2) = 8.5e-31
 Identities = 89/310 (28%), Positives = 144/310 (46%)

Query:     3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK 62
             GS++ L     ++P I+E         TPLH+A+  G+  FA E++  KP  A +L++  
Sbjct:    12 GSIDELYAHIHENPYILEIIDAIPFINTPLHIASASGNLSFAMELMNLKPSFARKLNTYG 71

Query:    63 SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
              S LH+A ++G   +V +LL+V  D       +G  P H    RG  D++ E   A P  
Sbjct:    72 LSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRRGETDLMTEFLLACPGC 131

Query:   123 ASARLIWGETILHLCVKHNQLEALKFLLE-----NMGDSE-----LLNAKDDYGMTILHL 172
                  + GET LH+ V +++ E L+ LL         D+E      LN +D  G T LH+
Sbjct:   132 IKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLEMQFLNKRDQDGNTALHI 191

Query:   173 AVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232
             A    + +A+K+L   +A+  N     G TA DIL   +    + +I  ++R+ G  S  
Sbjct:   192 AAYQNRFKAVKILVKCSAVNRNIHNRTGLTALDILHNQRDHHANSNIENIIRKWGGKSGN 251

Query:   233 DLQLPANELAVIQTN-SVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVIST 291
              L        ++++  S T H   Q    +              E  R+A +V+A++I T
Sbjct:   252 SLPKSKKVSEILRSPISFTEHLFTQTARYRNQTS----------EGTRSALLVIAALIIT 301

Query:   292 MGFQAAVDPP 301
               +Q A+ PP
Sbjct:   302 ATYQTALQPP 311

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 95/268 (35%), Positives = 141/268 (52%)

Query:    44 AKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA 103
             A +ILRQ  R   +LD    S LH A+  G V  V+A L V    C   D DG+ PLH+A
Sbjct:    31 AGKILRQ--RSVFDLDKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVA 88

Query:   104 AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDS---ELLN 160
              MRG IDV+ E+  +  D      + G+T LHL V H ++EA+  ++E + ++   ++LN
Sbjct:    89 TMRGKIDVIREIVASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLN 148

Query:   161 AKDDYGMTILHLAVADKQIEAIKLLTT-----STAIEVNAVTANGFTAWDILAQSKRDTK 215
              KD+ G T LHLA   K  + I++L       S + EVNA+   G +A D+L     +  
Sbjct:   149 KKDEQGNTALHLATWRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAG 208

Query:   216 DWDIGELLRRAGAISAQDLQLPANELAVIQTNSVTSHENNQKHEGKKDL-KGTPWNLD-D 273
             D +I E L  AGA   +D+     E     T++ T  E   K +  K+L K   +    D
Sbjct:   209 DREIYEKLIEAGAQRGRDIGTTNVERT---TSTSTCQERTMKSQSHKELVKYFTFKKHRD 265

Query:   274 WLEKKRNAAMVVASVISTMGFQAAVDPP 301
                + R+A +VVAS+++T  FQA++ PP
Sbjct:   266 SPSEARSALLVVASLVATATFQASLTPP 293

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 89/304 (29%), Positives = 153/304 (50%)

Query:     2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSR 61
             +GSV+ L  L Q  P I+++  V  +  TPLH A+  G  D A E++  KP  A++L+  
Sbjct:    11 SGSVDDLYSLIQAAPDILQKVDVLPIIHTPLHEASSAGKLDLAMELMILKPSFAKKLNEY 70

Query:    62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
               S LH+A +   V +   L++V P         G  PLHL A +G +D+L +   A P+
Sbjct:    71 GLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAKKGDVDLLTDFLLACPE 130

Query:   122 AASARLIWGETILHLCVKHNQLEALKFL---LENMGDSE-----LLNAKDDYGMTILHLA 173
             +     + GETILH+ + +++ E LK L   ++ M DS+     +LN +D  G T+LHLA
Sbjct:   131 SIKDVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNRRDRGGNTVLHLA 190

Query:   174 VADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD 233
               +   + +K L    +++ N    +G TA D+L +++    + +I E+++ +G  +   
Sbjct:   191 AYENNDKVVKQLVKCLSLDRNIQNKSGMTALDVL-RARGSHMNKEIEEIIQMSGGKTGGS 249

Query:   234 LQLPANELAVIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVISTMG 293
             L     E  +     VT  E+ +    +   +     + D     RNA +V+A++I +  
Sbjct:   250 LS-GIQEWYIFLREPVTFKEHCKTRIARYRSR-----ISDG---SRNALLVIAALIISAT 300

Query:   294 FQAA 297
             FQ A
Sbjct:   301 FQTA 304

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 6.9e-26, P = 6.9e-26
 Identities = 92/316 (29%), Positives = 161/316 (50%)

Query:     2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSR 61
             +G+++ L EL  +DP ++++        TPLHVAA+ G  +FA E++  KP  A +L++ 
Sbjct:    12 SGNIDLLYELIHEDPYVLDKTDHVPFVNTPLHVAAVNGKTEFAMEMMNLKPSFARKLNAD 71

Query:    62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
               + LH+A + G+  +V  +++V P         G  PL +A  R  ID++ E     P+
Sbjct:    72 GLTPLHLAVEHGHFWLVLEVVKVDPSLVRIKGRHGMTPLLVAVSRKKIDLMSEFFLGCPE 131

Query:   122 AASARLIWGETILHLCVK-HNQLEALKFLLENMG--------DSE-----LLNAKDDYGM 167
             +     + GE  LH+ V  ++Q E L  L   MG        D+E     ++N +D  G 
Sbjct:   132 SIVDANVNGENALHIAVNNYDQREGLSVLKVLMGWILRLCQKDAEWIETRVINRRDKDGN 191

Query:   168 TILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI-LAQSKRDTKDWDIGELLRRA 226
             T LHLA  +   +A+KLL  S+ I VN    NG T +DI +  + R+     I  +++R 
Sbjct:   192 TPLHLAAYEINRQAMKLLLESSKINVNIENKNGLTVFDIAVLHNNRE-----IERMVKRH 246

Query:   227 GAISAQDLQLPANELAVIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWL-EKKRNAAMVV 285
             G   +  L      + +  T+ + + + + + E ++  K   ++   W+ E++RNA +VV
Sbjct:   247 GGKRSVSL------VKIKTTSDILASQLSWR-ESRRTKKIRFYS---WISEERRNALLVV 296

Query:   286 ASVISTMGFQAAVDPP 301
             A++I T  +Q  + PP
Sbjct:   297 ATLIVTATYQTVLQPP 312

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 76/276 (27%), Positives = 129/276 (46%)

Query:    32 LHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD 91
             LH+A   GH    + +L  +P++++ +    ++ L  A+ +G+  +V  LL         
Sbjct:   182 LHIACSQGHRSIVQLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEI 241

Query:    92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
             +  +G+N LHLAA +GH+D++  L    P  A      G+T LH+ VK    + ++ LL 
Sbjct:   242 SRSNGKNALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLR 301

Query:   152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
                D  ++   D +G T+LH+A   K+ E +  L       VNA+T +  TA+DI     
Sbjct:   302 --ADPAIVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLT 359

Query:   212 RDTKDWDIGELLRRAGAISAQDLQLPANEL--AVIQTNSVTSHENNQKHEGKKDLKGTPW 269
                +  +I E+L R GA+ A +L  P +EL   V +       +  Q  +  K++ G   
Sbjct:   360 HSEETAEIKEILSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAK 419

Query:   270 NLDDW----LEKKRNAAMVVASVISTMGFQAAVDPP 301
              L       +    N+  VVA + +T+ F A    P
Sbjct:   420 ELRKLHRAGINNATNSVTVVAVLFATVAFAAIFTVP 455

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 92/311 (29%), Positives = 147/311 (47%)

Query:     3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK 62
             GS+N    L +++P I++         TPLHVAA   +  FA E+L  KP  A +L++  
Sbjct:    12 GSINDFYALIEENPYILDNINAVPFVNTPLHVAAASDNIPFAMEMLNLKPSFARKLNTSG 71

Query:    63 SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
              S LH+A +K +   +  LL   P        +G  P HL A+RG ++++ E  +  P  
Sbjct:    72 YSPLHLAVEKDHREFITWLLWRDPGLVRVKGREGITPFHLLAIRGDVNLVAECLKYCPVC 131

Query:   123 ASARLIWGETILHLCVKHNQLEALKFL---LENMG-------DSELLNAKDDYGMTILHL 172
                  + G   LHL V +++ E L+ L   L+ M        +S+ LN KD    T LHL
Sbjct:   132 IQDVSVNGHNALHLAVMNDRFEILQVLTGWLQRMSQKDSASTESDFLNRKDLAHNTPLHL 191

Query:   173 AVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQS--KRDTKDWDIGELLRRAGAIS 230
             A   +  +A+KLL     +++N V A+G T  DIL  +   RD  D D+ +++ + G   
Sbjct:   192 AAYKEDHQAVKLLLQCQLVKLNEVNADGLTFLDILRNNGQSRDL-DKDLEQVVVKTGCKE 250

Query:   231 AQDLQLPANELAVIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVIS 290
             A  L  P  E    Q  S  +   +    G + L+       D  E+ R   +++ ++I 
Sbjct:   251 AASL--PQLEKPSDQFKSPVTFLAHCSI-GIRRLRS------DTSEEGRAVFLIICTLIL 301

Query:   291 TMGFQAAVDPP 301
             T  +Q A+ PP
Sbjct:   302 TSTYQTALQPP 312

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 90/324 (27%), Positives = 149/324 (45%)

Query:     2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSR 61
             +G+V+ L  L  +DP I++   V     TPLH A+  G  D A E++  KP  A++L+S 
Sbjct:    11 SGNVDALYALIHKDPYILQNIDVLPFVHTPLHEASSTGKTDLAMELMVLKPTFAKKLNSD 70

Query:    62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
               S LH+A +   V +   L+++ PD        G  PLHL   +G  ++L E   A P+
Sbjct:    71 GVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKGDANLLTEFLLACPE 130

Query:   122 AASARLIWGETILHLCVKHNQLEALKFL---LENMGDSE-------LLNAKDDYGMTILH 171
             +     + GET LH+ V +++ E LK L   +  +  S+       +LN +D  G TILH
Sbjct:   131 SIKDTNVNGETALHIAVMNDRYEELKVLTGWIHRLHKSDAASTEIHVLNKRDRDGNTILH 190

Query:   172 LAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISA 231
             LA      +A K L    ++  +     G TA DIL ++     +    +++R +G  S 
Sbjct:   191 LAAYKNNHKAFKELLKCISLNRDIQNKGGMTALDIL-RTNGSHMNIKTEKIIRHSGGKSG 249

Query:   232 QDLQLPANELAVIQTNSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAMVVASVIST 291
               L       +V   + +T  E       +   K     + D     RNA +V+ ++I T
Sbjct:   250 VSLS-KVKTASVFLRSPITFVEYCSTTMTR--YKN---RMSDGT---RNALLVITALIIT 300

Query:   292 MGFQAAVDPPQSPQLAASSFVVWN 315
               +Q AV P    ++  +  ++ N
Sbjct:   301 ATYQTAVQPQDKDEIYYTGNIMIN 324

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 83/292 (28%), Positives = 132/292 (45%)

Query:    31 PLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
             PLH+AA+ GH    + +L     +++      ++ L  A+ +G+  +V  LL    +   
Sbjct:   167 PLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLE 226

Query:    91 DTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLL 150
              +  + +N LHLAA +GH++V++ L    P  A      G+T LH+ VK    E +K LL
Sbjct:   227 ISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLL 286

Query:   151 ENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQS 210
             +   D  ++   D    T LH+A   K+ E ++LL +      N +T +  TA DI    
Sbjct:   287 D--ADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGL 344

Query:   211 KRDTKDWDIGELLRRAGAISAQDLQLPANEL--AVIQT-NSV------TSHENNQKHEGK 261
                 +   I E L R+GA+ A +L  P +EL   V Q  N V      T   N   H   
Sbjct:   345 PLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNIS 404

Query:   262 KDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPPQSPQLAASSFVV 313
             K+L+       + +    N+  VVA + +T+ F A    P       S+ VV
Sbjct:   405 KELRKLH---REGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVV 453

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2012532 AT1G14480 "AT1G14480" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 89/318 (27%), Positives = 150/318 (47%)

Query:     2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSR 61
             +GS+N L  L  ++P I+E         TPLHVAA+ G+ +FA E+L  KP  A +L++ 
Sbjct:    11 SGSINELYALIDENPYILENIDAVPFVSTPLHVAAVFGNIEFAMEMLNLKPSFARKLNTS 70

Query:    62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRN---PLHLAAMRGHIDVLEELARA 118
               S LH+A +K     V  +L         + V GRN   P HL  +RG  D++ E    
Sbjct:    71 GYSPLHLAVEKEQSDFVSHMLW---HDGGLSRVKGRNGVTPFHLLVIRGDDDLVAECLIT 127

Query:   119 KPDAASARLIWGETILHLCVKHNQLEALKFL---LENMG-------DSELLNAKD-DYGM 167
              P+      +  +  LHL V +++ E L+ L   ++ M        ++ +LN +D D+  
Sbjct:   128 SPECIEDVNVDRQNALHLAVMNDRFEVLQVLTGWIQRMSQKDAYYIENRVLNKRDFDFN- 186

Query:   168 TILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTK--DWDIGELLRR 225
             T LHLA      +A+KLL     +E N V  +  T  DIL     +    + D+ + + +
Sbjct:   187 TALHLAAYKNDQQALKLLLKCRLVEPNLVNIDDLTFVDILRTQGENAGGGNLDLEQAVIK 246

Query:   226 AGAISAQDLQLPANELAVIQT--NSVTSHENNQKHEGKKDLKGTPWNLDDWLEKKRNAAM 283
              G + A  +     E  ++++  N +T +  + K      +K +  + D      R A +
Sbjct:   247 TGCVEAASMPKFKEESDLLKSPINFMTYYSTSMKR-----MKSSTSDQD------RGAFL 295

Query:   284 VVASVISTMGFQAAVDPP 301
             +V ++I T  +Q A+ PP
Sbjct:   296 IVCTLIITATYQMALQPP 313

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 6.0e-19, P = 6.0e-19
 Identities = 79/280 (28%), Positives = 135/280 (48%)

Query:    33 HVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT 92
             HVAA  GH    KE+LR  P +    D+  +S L+ A+ + ++ IV A+L V P      
Sbjct:    99 HVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIV 158

Query:    93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
               +G+  LH A   G + +++ L          +   G+T LH+ VK   LE ++ +L+ 
Sbjct:   159 RKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQ- 217

Query:   153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
               D  +LN +D  G T LH+A    + +   LL T TAIEVNA+     TA D+  + + 
Sbjct:   218 -ADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQY 276

Query:   213 DTKDWDIGELLRRAGA-----ISAQD----LQLPANELA-VIQTNSVTSHENNQKHEG-K 261
                  +I E L  AGA     I  +D    L+   +++   +Q+  + + + N++  G  
Sbjct:   277 SESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIA 336

Query:   262 KDLKGTPWNLDDWLEKKRNAAMVVASVISTMGFQAAVDPP 301
             K+L+       + ++   N+  VVA + +++ F A  + P
Sbjct:   337 KELRKLH---REAVQNTTNSITVVAVLFASIAFLAIFNLP 373

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032248001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (451 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	434
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-13
pfam13962	114	pfam13962, PGG, Domain of unknown function	7e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-04
smart00248	30	smart00248, ANK, ankyrin repeats	6e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 99.8 bits (249), Expect = 2e-25
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 5/127 (3%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
           D    + LH+A+  G++ +VK LL+   D     D DGR PLHLAA  GH+++++ L   
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQ 178
             D  +AR   G T LHL  ++  L+ +K LL++  D   +NA+D  G T LHLA  +  
Sbjct: 63  GAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGH 118

Query: 179 IEAIKLL 185
           +E +KLL
Sbjct: 119 LEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 88.6 bits (220), Expect = 3e-21
 Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 3/127 (2%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
            +    TPLH+AA  GH +  K +L     +    D+   + LH+A++ G++ IVK LL+
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQL 143
              D  +  D DG  PLHLAA  G++DV++ L +   D  +AR   G T LHL  K+  L
Sbjct: 62  KGADVNA-RDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHL 119

Query: 144 EALKFLL 150
           E +K LL
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.7 bits (210), Expect = 6e-20
 Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
            D DGR PLHLAA  GH++V++ L     D  +     G T LHL  K+  LE +K LLE
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND-GRTPLHLAAKNGHLEIVKLLLE 61

Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
              D   +NA+D  G T LHLA  +  ++ +KLL    A  VNA   +G T   + A++ 
Sbjct: 62  KGAD---VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNG 117

Query: 212 R 212
            
Sbjct: 118 H 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 32  LHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD 91
           LH+AA  G+ +  K +L +   +         +ALH+A++ G + IVK LL+   D    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGADVN-A 56

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
            D DG   LHLAA  G++++++ L     D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 13/101 (12%)

Query: 66  LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRN---PLHLAAMRGHIDVLEELARAKPDA 122
           LH+A++ G + +VK LL+         DV+  +    LHLAA  G++++++ L     D 
Sbjct: 1   LHLAAKNGNLELVKLLLE------KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADV 54

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD 163
            +A+   G T LHL  ++  LE +K LLE+  D   +N KD
Sbjct: 55  -NAKDKDGNTALHLAARNGNLEIVKLLLEHGAD---INLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 100 LHLAAMRGHIDVLEELARAKPDAASARLIWGET--ILHLCVKHNQLEALKFLLENMGDSE 157
           LHLAA  G++++++ L     D     +  G+T   LHL  ++  LE +K LLE+  D  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD-----VNLGDTDTALHLAARNGNLEIVKLLLEHGAD-- 53

Query: 158 LLNAKDDYGMTILHLAVADKQIEAIKLL 185
            +NAKD  G T LHLA  +  +E +KLL
Sbjct: 54  -VNAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 64.5 bits (158), Expect = 7e-13
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 19/114 (16%)

Query: 272 DDWLEKKRNAAMVVASVISTMGFQAAVDPPQS------------PQLAASS-----FVVW 314
            +WLEK RN+ +VVA++I+T+ F A   PP              P LA        F V 
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 315 NTIGFLASLSLILLLIIDLPINRILFAWILA--WIMSLAIVAMAITYIVSIALI 366
           NTI F+ASL  ++LL+  +P        +LA   ++ L+++++ + +      +
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 11/222 (4%)

Query: 27  LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
                L +            +L     ++   D + +  L +A           L  ++ 
Sbjct: 4   SLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVD 63

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQL--- 143
              +  D+DGR PLH AA +G   +++ L  +  D  +A+   G+T LHL   +      
Sbjct: 64  RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEG 122

Query: 144 --EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
             E  K LLE   D ++ N +D+ G T LH A  +   + ++LL      + N+  + G 
Sbjct: 123 NIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL-LEAGADPNSRNSYGV 181

Query: 202 TAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQLPANELAV 243
           TA D  A++ R     ++ +LL   G   +            
Sbjct: 182 TALDPAAKNGRI----ELVKLLLDKGLHLSLLKFNLEGVANA 219

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 35  AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT-- 92
            A  G+    +E+L+ K    +  DS+  + LHIA+ KGY   V  LL+     C+    
Sbjct: 532 VASTGNAALLEELLKAK-LDPDIGDSKGRTPLHIAASKGYEDCVLVLLK---HACNVHIR 587

Query: 93  DVDGRNPLHLAAMRGH---IDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
           D +G   L  A    H     +L   A      A+  L      L    K N L A+K L
Sbjct: 588 DANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDL------LCTAAKRNDLTAMKEL 641

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
           L+   +   ++++D  G T L +A+A+  ++ ++LL  + A    A T + F+
Sbjct: 642 LKQGLN---VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFS 691

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLL 150
           GR  LH AA+ G +++++ L     D        G T LH+  ++  LE LK LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDIN-RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
          T LH+AA  G+ +  K +L     +    D   ++ALH+A++ G + IVK LL+   D  
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADV-NAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 56  EELDSRKSSALH---IASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVL 112
           E +D    +AL+   + +    V  V+ LL    D  +     G+ PLHL  +    + +
Sbjct: 5   ESVDIIMEAALYDYLLNASNVTVEEVRRLLAAGADV-NFRGEYGKTPLHLY-LHYSSEKV 62

Query: 113 EELARAKPDAAS---ARLIWGETILHLCVKHNQ-LEALKFLLENMGDSELLNAKDDYGMT 168
           +++ R   +A +   A    G T LHL + +   L+ +K L++   D   +NAKD  G T
Sbjct: 63  KDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD---VNAKDKVGRT 119

Query: 169 ILHLAVADKQIEA--IKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA 226
            LH+ ++   I    I+LL    A +VNA+   G T   +L +S+    + ++  LL  A
Sbjct: 120 PLHVYLSGFNINPKVIRLLLRKGA-DVNALDLYGMTPLAVLLKSRN--ANVELLRLLIDA 176

Query: 227 GA 228
           GA
Sbjct: 177 GA 178

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
           +ALH A+  G + +VK LL+   D  + TD DG   LH+AA  G+++VL+ L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 15/142 (10%)

Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSDTDV---DGRNPLHLAAMRGHIDVLEELAR--A 118
           S LH A ++G V  V+ LL +   K +D DV   DG  PLHLA +   +D+++ L    A
Sbjct: 70  SELHDAVEEGDVKAVEELLDL--GKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIARGA 126

Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQ 178
            PD  +       + LHL V    ++ ++ L+++      L+ +D  G T L +A+A   
Sbjct: 127 DPDIPNTDKF---SPLHLAVMMGDIKGIELLIDHKA---CLDIEDCCGCTPLIIAMAKGD 180

Query: 179 IEAIKLLTTSTAIEVNAVTANG 200
           I   K+L  S A  ++    NG
Sbjct: 181 IAICKMLLDSGA-NIDYFGKNG 201

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 132 TILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           T LH      +LE +K+LLE       +N  D+ G T LH+A  +  +E +KLL
Sbjct: 3   TALHKAAISGRLELVKYLLEK---GVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 29  ETPLHVAALLGHE-----DFAKEILRQKPR--IAEELDSRKSSALHIASQKGYVGIVKAL 81
           +TPLH+AAL G+      + AK +L       +    D   ++ LH A+  G   IV+ L
Sbjct: 107 DTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL 166

Query: 82  LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN 141
           L+   D  +  +  G   L  AA  G I++++ L       +  +            K N
Sbjct: 167 LEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRN 225

Query: 142 QLEALKFLLE 151
            L     ++ 
Sbjct: 226 ILNLTSLIIA 235

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 52/199 (26%), Positives = 75/199 (37%), Gaps = 34/199 (17%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYV-----GIVKALLQ- 83
            PL++A    + D  K +L     I        S+ LH  S   Y       IVK LL+ 
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSS-TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95

Query: 84  -VIPDKCSDTDVDGRNPLHLAAMR--GHIDVLEELA--RAKPDAASARLIWGETILHLCV 138
               +   +  +    PL  A  +      ++E L    A  +  ++    GE +LHL +
Sbjct: 96  GANVNAPDNNGI---TPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD---GENLLHLYL 149

Query: 139 K--HNQLEALKFLLENMGD------SELL-------NAKDDYGMTILHLAVADKQIEAIK 183
           +     L+ LK L++   D         L       N KD YG T LH AV +   E +K
Sbjct: 150 ESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVK 209

Query: 184 LLTTSTAIEVNAVTANGFT 202
            L    A   N V   G T
Sbjct: 210 YLLDLGA-NPNLVNKYGDT 227

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
           D  + LH A   G +  +EEL      A       G T LHL     +L+ +K L+    
Sbjct: 67  DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA 126

Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDT 214
           D ++ N       + LHLAV    I+ I+LL    A  ++     G T   I+A +K D 
Sbjct: 127 DPDIPNTDK---FSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPL-IIAMAKGDI 181

Query: 215 KDWDIGELLRRAGA 228
               I ++L  +GA
Sbjct: 182 ---AICKMLLDSGA 192

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 90  SDTDVDGRNP-----LHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
              DV+ ++      LH A  +G ++ ++ L     D  +     G   +H+ +KHN  +
Sbjct: 113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFD 171

Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
            +K LLE        N KD+ G + LH A        IKLL       +     NGFT
Sbjct: 172 IIKLLLEK---GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN-HIMNKCKNGFT 225

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 115 LARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173
           L    P   +A    G T LHL  K+  LE +++LL+   D   LN +D  G+T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD---LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 75  VGIVKALLQVIPDKCSDTDVDGRNPLH--LAAMRGHIDVLEELARAKPDAASARLIWGET 132
           V +++ L+    D     D   R+ LH  L + +    ++ EL RA  D A A  + G T
Sbjct: 167 VELLRLLIDAGADVY-AVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA-ATDMLGNT 224

Query: 133 ILHLCVKHNQLEALK---FLLENMGDSELLNAKDDYGMTILHLA-VADKQIEAIKLLTTS 188
            LH     +  +       L+  +      NA++ YG T LH A V +      +L+   
Sbjct: 225 PLHSMATGSSCKRSLVLPLLIAGISI----NARNRYGQTPLHYAAVFNNPRACRRLIALG 280

Query: 189 TAIEVNAVTANGFTA 203
              ++NAV+++G T 
Sbjct: 281 A--DINAVSSDGNTP 293

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  G+ED    +L+    +    D+  ++AL  A    +  I + L        
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIR-DANGNTALWNAISAKHHKIFRILYHFA--SI 616

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
           SD    G + L  AA R  +  ++EL +   +  S     G T L + +  + ++ ++ L
Sbjct: 617 SDPHAAG-DLLCTAAKRNDLTAMKELLKQGLNVDSEDH-QGATALQVAMAEDHVDMVRLL 674

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQI-EAIKLLTTSTAIEVNAVTANG 200
           + N  D +  N  DD+  T L   +  +++  +I ++ +  A E +     G
Sbjct: 675 IMNGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEPDLGRDGG 726

Length = 823

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 43/143 (30%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 77  IVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR--AKPDAASARLIWGETIL 134
           I K LL    D        G   LH A       + E L    A  +          + L
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD---KTNNSPL 205

Query: 135 HLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD-KQIEAIKLLTTSTAIEV 193
           H  VKH     +  LLEN G S   +A+D  G T LH++V   K  + +KLL      +V
Sbjct: 206 HHAVKHYNKPIVHILLEN-GAS--TDARDKCGNTPLHISVGYCKDYDILKLLLEHGV-DV 261

Query: 194 NA-VTANGFTAWDILAQSKRDTK 215
           NA     G TA     +S+R  K
Sbjct: 262 NAKSYILGLTALHSSIKSERKLK 284

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82
          T LH AA+ G  +  K +L +   I    D   ++ALHIA++ G + ++K LL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPD 121
           DGR PLHLAA  G+++V++ L     D
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPD 121
           DG  PLHLAA  GH++V++ L  A  D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 12/75 (16%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--- 115
           D    + LHIA   G+V +V+ LL+   D  +  D DG+ PL LA   G  +V++ L   
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFREVVQLLSRH 170

Query: 116 --------ARAKPDA 122
                   A AKPD+
Sbjct: 171 SQCHFELGANAKPDS 185

Length = 664

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 160 NAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
           NA+D+ G T LHLA ++  +E +KLL  + A +VNA   +G T 
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGA-DVNAKDNDGRTP 43

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 14/167 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           E+ LH A   G     +E+L       +       + LH+A+    + I+K L+     +
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA----R 124

Query: 89  CSDTDV---DGRNPLHLAAMRGHIDVLEELA--RAKPDAASARLIWGETILHLCVKHNQL 143
            +D D+   D  +PLHLA M G I  +E L   +A  D        G T L + +    +
Sbjct: 125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC---CGCTPLIIAMAKGDI 181

Query: 144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
              K LL++  + +         +  L  A+ + +I+ ++L     A
Sbjct: 182 AICKMLLDSGANIDYFGKNGC--VAALCYAIENNKIDIVRLFIKRGA 226

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	99.98
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.91
PHA02792	631	ankyrin-like protein; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
PF13962	113	PGG: Domain of unknown function	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.67
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.57
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.51
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.36
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.33
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.32
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.29
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.77
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.66
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.64
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.64
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.62
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.59
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
PF13606	30	Ank_3: Ankyrin repeat	98.45
PF13606	30	Ank_3: Ankyrin repeat	98.44
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.43
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.41
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.41
KOG0522	560	consensus Ankyrin repeat protein [General function	98.28
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.18
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.16
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.12
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.11
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.07
KOG2384	223	consensus Major histocompatibility complex protein	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.94
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.88
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.86
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.84
KOG2384	223	consensus Major histocompatibility complex protein	97.79
KOG0511	516	consensus Ankyrin repeat protein [General function	97.69
KOG2505	591	consensus Ankyrin repeat protein [General function	96.59
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.28
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.25
KOG2505	591	consensus Ankyrin repeat protein [General function	95.68
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.06
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.32
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.96
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	90.4
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.71
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.88
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	85.46
PF10011	371	DUF2254: Predicted membrane protein (DUF2254); Int	80.95

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-36  Score=248.31  Aligned_cols=198  Identities=28%  Similarity=0.360  Sum_probs=177.1

Q ss_pred             ChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 041009            4 SVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ   83 (434)
Q Consensus         4 ~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~   83 (434)
                      ....++++++.+|.-++ ...|.+|+||||+||..|+.+++++|++...-.++..|..||||||.||..|+.++|+.|+.
T Consensus        15 ~~~kveel~~s~~kSL~-~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~   93 (226)
T KOG4412|consen   15 EEFKVEELIQSDPKSLN-ARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLN   93 (226)
T ss_pred             hHHHHHHHHhcChhhhh-ccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhc
Confidence            34567888888884332 22345899999999999999999999975444457789999999999999999999999999


Q ss_pred             h-CCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCC
Q 041009           84 V-IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK  162 (434)
Q Consensus        84 ~-~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  162 (434)
                      + ++++ +..++.|.||||+|+..|+.+++++|+++++.+ ..+|..|.||||-|+.-|..+++++|+..|+.   +|.+
T Consensus        94 r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~~a~---~n~q  168 (226)
T KOG4412|consen   94 RSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP---LNTQ  168 (226)
T ss_pred             CCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhcCCC---CCcc
Confidence            9 6666 899999999999999999999999999999766 88899999999999999999999999999988   9999


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          163 DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       163 d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      |..|+||||.|...|+.++..+|+++|+ |.+..|++| ||+..+..
T Consensus       169 Dk~G~TpL~~al~e~~~d~a~lLV~~gA-d~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  169 DKYGFTPLHHALAEGHPDVAVLLVRAGA-DTDREDKEG-TALRIACN  213 (226)
T ss_pred             cccCccHHHHHHhccCchHHHHHHHhcc-ceeeccccC-chHHHHHH
Confidence            9999999999988899999999999998 999999999 99887765

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-33  Score=261.97  Aligned_cols=212  Identities=17%  Similarity=0.136  Sum_probs=188.8

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.+.++.|++.+..     ..|.+|.||||+|+..|+.++++.|++.+++. +..  +|.||||+|+..|+.+++++|
T Consensus         9 ~~~~~~~~~Lis~~a~-----~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF-----KADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             cCHHHHHHHHHhCCCC-----CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHH
Confidence            4778999999998753     35888999999999999999999999999876 333  478999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCC-ChHHHHHHHcCCHHHHHHHHHhcCCCcccc
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG-ETILHLCVKHNQLEALKFLLENMGDSELLN  160 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  160 (434)
                      ++.+++. +.+|..|+||||+|+..|+.++++.|++++++. ..++..| .||||+|+..|+.+++++|++++++.    
T Consensus        81 L~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~----  154 (284)
T PHA02791         81 LFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST----  154 (284)
T ss_pred             HHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc----
Confidence            9999887 789999999999999999999999999999987 4556666 59999999999999999999987541    


Q ss_pred             CCC-CCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCH-HHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009          161 AKD-DYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA-WDILAQSKRDTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       161 ~~d-~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~-l~la~~~~~~~~~~~i~~~L~~~g~~~~~~  233 (434)
                       .| ..|+||||+|+..|+.+++++|+++|+ +++.+|..|.|| ||+|+.    .+..+++++|+++|++....
T Consensus       155 -~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA-d~n~~d~~g~t~~L~~Aa~----~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        155 -FDLAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLAID----NKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             -cccccCccHHHHHHHcCCHHHHHHHHHCCC-CCCcccCCCCChHHHHHHH----cCCHHHHHHHHHCCCCCccC
Confidence             23 358999999999999999999999998 999999999987 999999    77889999999999987544

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-34  Score=234.85  Aligned_cols=196  Identities=30%  Similarity=0.325  Sum_probs=176.1

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccC-CCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELD-SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  106 (434)
                      +.++.+.+|......-++.+++..+.-++.+| .+|+||||+||..|+.+++.+|++...-..+.+|..||||||+|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            46788999999888999999999985445555 59999999999999999999999765444577899999999999999


Q ss_pred             CCHHHHHHHHHh-CCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009          107 GHIDVLEELARA-KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL  185 (434)
Q Consensus       107 g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L  185 (434)
                      |+.++++.|+.+ ++++ +..+..|.|+||+|+..|+.|+.++|+++|+.   ++.+|..|.||||-|+..|..+++++|
T Consensus        83 g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~---i~~kD~~~qtplHRAAavGklkvie~L  158 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL---IRIKDKQGQTPLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             CcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCC---CcccccccCchhHHHHhccchhhHHHH
Confidence            999999999999 7777 77888999999999999999999999999988   899999999999999999999999999


Q ss_pred             hhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          186 TTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       186 l~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      +..++ .+|..|..|+||||.|.-    .++.+..-+|.++|++...
T Consensus       159 i~~~a-~~n~qDk~G~TpL~~al~----e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  159 ISQGA-PLNTQDKYGFTPLHHALA----EGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             HhcCC-CCCcccccCccHHHHHHh----ccCchHHHHHHHhccceee
Confidence            99997 999999999999999954    3467888899999988644

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.1e-33  Score=275.15  Aligned_cols=217  Identities=23%  Similarity=0.224  Sum_probs=200.4

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.+   .+..+..|.||||+|+..|+.++++.|+++|++. +..+..|.||||.|+..|+.+++++|
T Consensus        12 ~g~~~iv~~Ll~~g~~---~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~L   87 (413)
T PHA02875         12 FGELDIARRLLDIGIN---PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEEL   87 (413)
T ss_pred             hCCHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHH
Confidence            6999999999999855   3556778999999999999999999999999876 67788999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      ++.++...+..+.+|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|+.+++++|+++|++   ++.
T Consensus        88 l~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~---~~~  163 (413)
T PHA02875         88 LDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC---LDI  163 (413)
T ss_pred             HHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCC
Confidence            99998876677889999999999999999999999999988 66788899999999999999999999999998   889


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCC-CHHHHHHHccCCCchhHHHHHHHHcCCCcc
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF-TAWDILAQSKRDTKDWDIGELLRRAGAISA  231 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~-t~l~la~~~~~~~~~~~i~~~L~~~g~~~~  231 (434)
                      +|..|+||||+|+..|+.+++++|+++|+ +++..+.+|. ||+|+|+.    .+..+++++|.+.|++..
T Consensus       164 ~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~~~t~l~~A~~----~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        164 EDCCGCTPLIIAMAKGDIAICKMLLDSGA-NIDYFGKNGCVAALCYAIE----NNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCcCCCCCCchHHHHHHH----cCCHHHHHHHHHCCcCcc
Confidence            99999999999999999999999999998 9999998875 88998998    667899999999999864

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-32  Score=252.88  Aligned_cols=205  Identities=19%  Similarity=0.226  Sum_probs=181.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+...   +..  +|+||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..|+.+++++|
T Consensus        40 ~g~~eiv~~Ll~~ga~~---n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~L  113 (284)
T PHA02791         40 DNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLF  113 (284)
T ss_pred             cCCHHHHHHHHHCcCCC---cCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            68999999999988653   322  4789999999999999999999999887 78899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCC-CHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCcccc
Q 041009           82 LQVIPDKCSDTDVDGR-NPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLN  160 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~-tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  160 (434)
                      ++.+++. +.++..|+ ||||+|+..|+.+++++|++++++...  ...|.||||+|+++|+.+++++|+++|++   ++
T Consensus       114 l~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd---~n  187 (284)
T PHA02791        114 VKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTS---TN  187 (284)
T ss_pred             HHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--cccCccHHHHHHHcCCHHHHHHHHHCCCC---CC
Confidence            9999987 67788875 899999999999999999998775421  13589999999999999999999999999   88


Q ss_pred             CCCCCCCcH-HHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009          161 AKDDYGMTI-LHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       161 ~~d~~g~t~-LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                      .+|..|.|| ||+|+..|+.+++++|+++|+ +++.+|.+| +++          ...|++++|+++.++-
T Consensus       188 ~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga-~in~~~~~~-~~l----------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        188 TNNSLLFIPDIKLAIDNKDLEMLQALFKYDI-NIYSVNLEN-VLL----------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCccCcccC-ccC----------CCHHHHHHHHHhhhhh
Confidence            999999987 999999999999999999998 999999965 555          4467999999876654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=259.31  Aligned_cols=199  Identities=27%  Similarity=0.307  Sum_probs=181.2

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccC-CCCCcHHHHHHHcCCHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELD-SRKSSALHIASQKGYVGIVKA   80 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~g~~~iv~~   80 (434)
                      .|+++.++.+++...  .+.+..|.+|-|+||+||.+++.+++++|+++++++ |..+ ..|.||||+|+++|+..++++
T Consensus        54 ~G~l~~v~~lve~~g--~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~l  130 (600)
T KOG0509|consen   54 YGELETVKELVESEG--ESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDL  130 (600)
T ss_pred             cchHHHHHHHHhhcC--cCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHH
Confidence            699999999999842  234667889999999999999999999999999998 5555 788999999999999999999


Q ss_pred             HHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCcccc
Q 041009           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLN  160 (434)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  160 (434)
                      |+++|+++ +.+|.+|.+|+|.|+..|+...+-+|+.++.+. +.+|.+|+||||+|+.+|....++.|++.++.   ++
T Consensus       131 LlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~---~~  205 (600)
T KOG0509|consen  131 LLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS---LL  205 (600)
T ss_pred             HHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhccc---cc
Confidence            99999998 899999999999999999999999999999776 88899999999999999998889999999988   67


Q ss_pred             CCC-CCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          161 AKD-DYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       161 ~~d-~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      .+| .+|+||||+|+..|+.+++. |+..++.+.+..|.+|+||+++|.+
T Consensus       206 ~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  206 LTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             ccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHH
Confidence            776 89999999999999999999 5555555999999999999999977

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-31  Score=266.55  Aligned_cols=200  Identities=23%  Similarity=0.274  Sum_probs=179.0

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      +||++.++.|++.++...  +..+..|.||||.|+..|+.++|++|++.|+++ +..+..|.||||.|+..|+.+++++|
T Consensus        11 ~gd~~~v~~ll~~~~~~~--n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~L   87 (434)
T PHA02874         11 SGDIEAIEKIIKNKGNCI--NISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKLL   87 (434)
T ss_pred             cCCHHHHHHHHHcCCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            699999999998876644  345778999999999999999999999999987 77889999999999999999999999


Q ss_pred             HhhCCCC----------------------CccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 041009           82 LQVIPDK----------------------CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVK  139 (434)
Q Consensus        82 l~~~~~~----------------------~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  139 (434)
                      ++.|.+.                      .+.+|..|.||||+|+..|+.+++++|++++++. +.+|..|.||||+|+.
T Consensus        88 l~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~  166 (434)
T PHA02874         88 IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIK  166 (434)
T ss_pred             HHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHH
Confidence            9887543                      2457888999999999999999999999999887 6678889999999999


Q ss_pred             cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       140 ~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      +|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|++.|+ +++..+..|.||+|.|+.
T Consensus       167 ~~~~~iv~~Ll~~g~~---~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~-~i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        167 HNFFDIIKLLLEKGAY---ANVKDNNGESPLHNAAEYGDYACIKLLIDHGN-HIMNKCKNGFTPLHNAII  232 (434)
T ss_pred             CCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCcCCCCCCCCHHHHHHH
Confidence            9999999999999998   78889999999999999999999999999987 888888888888888876

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=271.33  Aligned_cols=213  Identities=27%  Similarity=0.280  Sum_probs=104.9

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHH--hcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC--CHHHH
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAA--LLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG--YVGIV   78 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv   78 (434)
                      |+.++++.|++.++++   +..|..|.||||+|+  ..|+.++++.|+++|+++ +..|..|.||||+|+..|  +.+++
T Consensus        84 ~~~~iv~~Ll~~ga~i---~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv  159 (480)
T PHA03100         84 DVKEIVKLLLEYGANV---NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKIL  159 (480)
T ss_pred             chHHHHHHHHHCCCCC---CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHH
Confidence            4444444444444332   233444455555555  445555555555544443 344444555555555544  44555


Q ss_pred             HHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCC------ChHHHHHHHcCC--HHHHHHHH
Q 041009           79 KALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG------ETILHLCVKHNQ--LEALKFLL  150 (434)
Q Consensus        79 ~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g------~t~Lh~A~~~g~--~~~v~~Ll  150 (434)
                      ++|+++|++. +.+|..|.||||+|+..|+.+++++|++++++. ...+..|      .||||.|+..|+  .+++++|+
T Consensus       160 ~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll  237 (480)
T PHA03100        160 KLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLL  237 (480)
T ss_pred             HHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHH
Confidence            5555554444 344444555555555555555555555544444 2223333      445555555554  55555555


Q ss_pred             HhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          151 ENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       151 ~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      +.|++   ++.+|..|+||||+|+..|+.+++++|++.|+ |++.+|..|.||+|+|+.    .+..+++++|.+.|++
T Consensus       238 ~~g~d---in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga-d~n~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        238 SYGVP---INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA-NPNLVNKYGDTPLHIAIL----NNNKEIFKLLLNNGPS  308 (480)
T ss_pred             HcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCcHHHHHHH----hCCHHHHHHHHhcCCC
Confidence            55444   44555555555555555555555555555555 555555555555555554    3344555555555543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.9e-31  Score=264.94  Aligned_cols=214  Identities=16%  Similarity=0.179  Sum_probs=188.7

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCC--HHHHHH
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGY--VGIVKA   80 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~--~~iv~~   80 (434)
                      ++.++++.|++.+.++   +.+|.+|.||||+||..|+.++++.|+++|+++ +.+|..|.||||+|+..++  .+++++
T Consensus        50 ~~~~iv~~Ll~~Gadv---n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~l  125 (446)
T PHA02946         50 LDERFVEELLHRGYSP---NETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINL  125 (446)
T ss_pred             CCHHHHHHHHHCcCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            4678999999999654   678999999999999999999999999999987 7889999999999988764  899999


Q ss_pred             HHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCC--HHHHHHHHHhcCCCcc
Q 041009           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQ--LEALKFLLENMGDSEL  158 (434)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~  158 (434)
                      |+++|+++....|.+|.|||| |+..|+.++++.|++.+.+. ...|..|+||||.|+..++  .+++++|++.|++   
T Consensus       126 Ll~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad---  200 (446)
T PHA02946        126 LVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS---  200 (446)
T ss_pred             HHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC---
Confidence            999999985467899999998 66779999999999999887 7778999999999987554  6899999999999   


Q ss_pred             ccCCCCCCCcHHHHHHHcC--cHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009          159 LNAKDDYGMTILHLAVADK--QIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       159 ~~~~d~~g~t~LhlA~~~~--~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                      ++.+|.+|+||||+|+..+  +.+++++|++ ++ ++|.+|.+|.||||+|+...   ...+++++|+..|+..
T Consensus       201 in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga-din~~d~~G~TpLh~A~~~~---~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        201 PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST-DVNKQNKFGDSPLTLLIKTL---SPAHLINKLLSTSNVI  269 (446)
T ss_pred             CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC-CCCCCCCCCCCHHHHHHHhC---ChHHHHHHHHhCCCCC
Confidence            8999999999999999886  7899999985 55 99999999999999998832   2247888999988654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.98  E-value=9.6e-31  Score=261.23  Aligned_cols=226  Identities=23%  Similarity=0.265  Sum_probs=192.1

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCch----------------------hhccC
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRI----------------------AEELD   59 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~----------------------~~~~d   59 (434)
                      .|+.++++.|++.+.++   +..+..|.||||.|+..|+.+++++|+++|.+.                      .+.+|
T Consensus        45 ~g~~~iv~~Ll~~Ga~~---n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~  121 (434)
T PHA02874         45 SGDAKIVELFIKHGADI---NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKD  121 (434)
T ss_pred             cCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCC
Confidence            69999999999999664   556888999999999999999999999887542                      35678


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 041009           60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVK  139 (434)
Q Consensus        60 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  139 (434)
                      ..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++++++. ...+..|.||||+|++
T Consensus       122 ~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~  199 (434)
T PHA02874        122 AELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAE  199 (434)
T ss_pred             CCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            89999999999999999999999999987 789999999999999999999999999999887 5678889999999999


Q ss_pred             cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHH
Q 041009          140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDI  219 (434)
Q Consensus       140 ~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i  219 (434)
                      .|+.+++++|++.|++   ++.++..|.||||+|+..+. +.+++|+ .++ +++.+|.+|.||||+|+...   ...++
T Consensus       200 ~g~~~iv~~Ll~~g~~---i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~-~in~~d~~G~TpLh~A~~~~---~~~~i  270 (434)
T PHA02874        200 YGDYACIKLLIDHGNH---IMNKCKNGFTPLHNAIIHNR-SAIELLI-NNA-SINDQDIDGSTPLHHAINPP---CDIDI  270 (434)
T ss_pred             cCCHHHHHHHHhCCCC---CcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCC-CCCCcCCCCCCHHHHHHhcC---CcHHH
Confidence            9999999999999988   78888899999999998765 4556665 344 88888999999999988722   24678


Q ss_pred             HHHHHHcCCCccccCCCChhhh
Q 041009          220 GELLRRAGAISAQDLQLPANEL  241 (434)
Q Consensus       220 ~~~L~~~g~~~~~~~~~~~~~~  241 (434)
                      +++|.+.|++.........+.+
T Consensus       271 v~~Ll~~gad~n~~d~~g~TpL  292 (434)
T PHA02874        271 IDILLYHKADISIKDNKGENPI  292 (434)
T ss_pred             HHHHHHCcCCCCCCCCCCCCHH
Confidence            8999999888655444333333

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=264.09  Aligned_cols=219  Identities=17%  Similarity=0.125  Sum_probs=193.2

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhc-----CCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC---
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALL-----GHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG---   73 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g---   73 (434)
                      .++.++++.|++.+.++   +..|..|.||||.|+..     ++.++++.|+++|+++ +..|..|+||||+|+..|   
T Consensus        48 ~~~~~iv~~Ll~~Gadv---n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~  123 (489)
T PHA02798         48 SPSTDIVKLFINLGANV---NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYIN  123 (489)
T ss_pred             CCCHHHHHHHHHCCCCC---CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcC
Confidence            36889999999999664   66789999999999864     6789999999999997 888999999999999886   


Q ss_pred             CHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCC---HHHHHHHHHhCCcccccccCCCChHHHHHHHc----CCHHHH
Q 041009           74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH---IDVLEELARAKPDAASARLIWGETILHLCVKH----NQLEAL  146 (434)
Q Consensus        74 ~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~---~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~----g~~~~v  146 (434)
                      +.+++++|+++|+++ +..|.+|.||||+|+..|+   .+++++|+++|+++....+..|.||||.++.+    ++.+++
T Consensus       124 ~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~iv  202 (489)
T PHA02798        124 NLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADIL  202 (489)
T ss_pred             hHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHH
Confidence            789999999999998 8999999999999999998   99999999999998555566799999998764    478999


Q ss_pred             HHHHHhcCCCc------------------------------------cccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          147 KFLLENMGDSE------------------------------------LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       147 ~~Ll~~~~~~~------------------------------------~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      ++|+++|++..                                    -+|.+|..|+||||+|+..++.+++++|++.|+
T Consensus       203 k~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GA  282 (489)
T PHA02798        203 KLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGG  282 (489)
T ss_pred             HHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCC
Confidence            99998876421                                    146678899999999999999999999999998


Q ss_pred             ccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009          191 IEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       191 ~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                       |++.+|..|.||||+|+.    .+..++++.|.+.++..
T Consensus       283 -din~~d~~G~TpL~~A~~----~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        283 -DINIITELGNTCLFTAFE----NESKFIFNSILNKKPNK  317 (489)
T ss_pred             -cccccCCCCCcHHHHHHH----cCcHHHHHHHHccCCCH
Confidence             999999999999999998    66788999998877764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=9.7e-31  Score=268.09  Aligned_cols=218  Identities=19%  Similarity=0.195  Sum_probs=188.4

Q ss_pred             CCChHHHHHHHhcC-CCccccccc-CCCCCCHHHHHHh--cCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCC--H
Q 041009            2 AGSVNTLLELRQQD-PLIVERPTV-NCLSETPLHVAAL--LGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGY--V   75 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~-~~~~~~~~~-~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~--~   75 (434)
                      .|+.++++.|++.+ .++   +.. |..|.||||.|+.  +++.++++.|+++|+++ +..|..|.||||+|+..|+  .
T Consensus       152 ~v~leiVk~LLe~G~ADI---N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~  227 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNL---NYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCA  227 (764)
T ss_pred             CCCHHHHHHHHHCCCCCc---ccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCH
Confidence            48899999999998 553   555 7889999999865  46899999999999987 8889999999999999995  5


Q ss_pred             HHHHHHHhhCCCCCccCCCCCCCHHHHH-------------------------------------HHhCCHHHHHHHHHh
Q 041009           76 GIVKALLQVIPDKCSDTDVDGRNPLHLA-------------------------------------AMRGHIDVLEELARA  118 (434)
Q Consensus        76 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~A-------------------------------------a~~g~~~~v~~Ll~~  118 (434)
                      +++++|++.|+++ +.+|..|.||||.|                                     +..|+.++++.|+++
T Consensus       228 eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        228 SVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence            9999999999997 88999999999975                                     455788999999999


Q ss_pred             CCcccccccCCCChHHHHHHH--cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHH--------------cCcHHHH
Q 041009          119 KPDAASARLIWGETILHLCVK--HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA--------------DKQIEAI  182 (434)
Q Consensus       119 ~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~--------------~~~~~iv  182 (434)
                      +++. +.+|.+|+||||+|+.  +++.+++++|++.|++   ++.+|..|+||||+|+.              .++.+++
T Consensus       307 GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD---IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVV  382 (764)
T PHA02716        307 GVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND---LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVI  382 (764)
T ss_pred             CCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC---CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHH
Confidence            9987 6778999999999864  4678999999999999   89999999999999875              3688999


Q ss_pred             HHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       183 ~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      ++|+++|+ +++.+|..|.||||.++.........+++++|...|+.
T Consensus       383 klLL~~GA-DIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~  428 (764)
T PHA02716        383 QCLISLGA-DITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVL  428 (764)
T ss_pred             HHHHHCCC-CCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcch
Confidence            99999988 99999999999999543333335668899999987754

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=263.42  Aligned_cols=217  Identities=25%  Similarity=0.301  Sum_probs=199.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHH-----HHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHH--HcCC
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHV-----AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIAS--QKGY   74 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~-----Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa--~~g~   74 (434)
                      .|+.++++.|++.+.+.   +..+..|.||||+     |+..|+.++++.|+++|+++ +..|..|.||||+|+  ..|+
T Consensus        45 ~~~~~ivk~Ll~~g~~~---~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~  120 (480)
T PHA03100         45 ARNIDVVKILLDNGADI---NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNS  120 (480)
T ss_pred             cCCHHHHHHHHHcCCCC---CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccCh
Confidence            68999999999998653   5567789999999     99999999999999999998 888999999999999  9999


Q ss_pred             HHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC--CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 041009           75 VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG--HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN  152 (434)
Q Consensus        75 ~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  152 (434)
                      .+++++|++.|++. +..|..|.||||.|+..|  +.++++.|++++++. +..+..|.||||+|+..|+.+++++|+++
T Consensus       121 ~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  198 (480)
T PHA03100        121 YSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDN  198 (480)
T ss_pred             HHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            99999999999887 789999999999999999  999999999999987 56677899999999999999999999999


Q ss_pred             cCCCccccCCCCCC------CcHHHHHHHcCc--HHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHH
Q 041009          153 MGDSELLNAKDDYG------MTILHLAVADKQ--IEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLR  224 (434)
Q Consensus       153 ~~~~~~~~~~d~~g------~t~LhlA~~~~~--~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~  224 (434)
                      |++   ++..+..|      .||||.|+..++  .+++++|+++|. +++.+|..|.||||+|+.    .+..+++++|.
T Consensus       199 ga~---~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~-din~~d~~g~TpL~~A~~----~~~~~iv~~Ll  270 (480)
T PHA03100        199 GAD---INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV-PINIKDVYGFTPLHYAVY----NNNPEFVKYLL  270 (480)
T ss_pred             CCC---ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHH----cCCHHHHHHHH
Confidence            998   78888888      899999999999  999999999987 999999999999999998    66689999999


Q ss_pred             HcCCCccc
Q 041009          225 RAGAISAQ  232 (434)
Q Consensus       225 ~~g~~~~~  232 (434)
                      +.|++...
T Consensus       271 ~~gad~n~  278 (480)
T PHA03100        271 DLGANPNL  278 (480)
T ss_pred             HcCCCCCc
Confidence            99997544

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=261.61  Aligned_cols=194  Identities=25%  Similarity=0.234  Sum_probs=91.4

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCC-------
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGY-------   74 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~-------   74 (434)
                      .|+.++++.|++.+.++   +..|.+|.||||+||..|+.+.++.|++.+....   ...+.+|++.|+..|+       
T Consensus        47 ~g~~e~vk~Ll~~gadv---n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~~l~~a~~~~~~ei~~~L  120 (477)
T PHA02878         47 ARNLDVVKSLLTRGHNV---NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS---VFYTLVAIKDAFNNRNVEIFKII  120 (477)
T ss_pred             cCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc---cccchhhHHHHHHcCCHHHHHHH
Confidence            46777777777766442   4556667777777776665554444443321110   0111122222221111       


Q ss_pred             --------------------------HHHHHHHHhhCCCCCccCCCC-CCCHHHHHHHhCCHHHHHHHHHhCCccccccc
Q 041009           75 --------------------------VGIVKALLQVIPDKCSDTDVD-GRNPLHLAAMRGHIDVLEELARAKPDAASARL  127 (434)
Q Consensus        75 --------------------------~~iv~~Ll~~~~~~~~~~d~~-g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~  127 (434)
                                                .+++++|++.|+++ +..|.. |.||||+|+..|+.+++++|++++++. +..|
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d  198 (477)
T PHA02878        121 LTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPD  198 (477)
T ss_pred             HhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcC
Confidence                                      11344444444444 334444 455555555555555555555444443 3334


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHc-CcHHHHHHhhhccccccccccc-CCCCHHH
Q 041009          128 IWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD-KQIEAIKLLTTSTAIEVNAVTA-NGFTAWD  205 (434)
Q Consensus       128 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~-~~~~iv~~Ll~~~~~~~~~~n~-~g~t~l~  205 (434)
                      ..|.||||.|++.|+.+++++|++.|++   ++.+|..|+||||+|+.. ++.+++++|+++|+ +++..+. .|.||||
T Consensus       199 ~~g~tpLh~A~~~~~~~iv~~Ll~~ga~---in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga-dvn~~~~~~g~TpLh  274 (477)
T PHA02878        199 KTNNSPLHHAVKHYNKPIVHILLENGAS---TDARDKCGNTPLHISVGYCKDYDILKLLLEHGV-DVNAKSYILGLTALH  274 (477)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC-CCCccCCCCCCCHHH
Confidence            4445555555555555555555554444   444444455555554432 34445555544444 4444443 4445555


Q ss_pred             HH
Q 041009          206 IL  207 (434)
Q Consensus       206 la  207 (434)
                      +|
T Consensus       275 ~A  276 (477)
T PHA02878        275 SS  276 (477)
T ss_pred             HH
Confidence            44

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.6e-30  Score=256.22  Aligned_cols=222  Identities=26%  Similarity=0.291  Sum_probs=181.9

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCch---------------------------
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRI---------------------------   54 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~---------------------------   54 (434)
                      .|+.+.++.|++.+   .+.+..|..|.||||.||..++.|..+.|++.++++                           
T Consensus       131 ~~~~s~L~~Ll~~~---~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l  207 (929)
T KOG0510|consen  131 SGNYSCLKLLLDYG---ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFL  207 (929)
T ss_pred             cchHHHHHHHHHhc---CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhh
Confidence            45666666666666   334556666667777777777766666666655443                           


Q ss_pred             ----------hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCC--------------ccCCCCCCCHHHHHHHhCCHH
Q 041009           55 ----------AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC--------------SDTDVDGRNPLHLAAMRGHID  110 (434)
Q Consensus        55 ----------~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~--------------~~~d~~g~tpL~~Aa~~g~~~  110 (434)
                                ++..|..|.||||.|+..|+.++++.+|+.+....              +..|++|.||||+|++.|+.+
T Consensus       208 ~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~  287 (929)
T KOG0510|consen  208 PEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPE  287 (929)
T ss_pred             ccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChh
Confidence                      24456778888888888888888888888765432              346899999999999999999


Q ss_pred             HHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          111 VLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       111 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      .++.|+..|.+. +.++.++.||||.|+.+|+...++.|++ -.+..+.|..|..|+||||+|++.|+..++++|++.|+
T Consensus       288 svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA  365 (929)
T KOG0510|consen  288 SVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGA  365 (929)
T ss_pred             HHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcCh
Confidence            999999999998 7778999999999999999999999999 44556799999999999999999999999999999999


Q ss_pred             cccc--ccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          191 IEVN--AVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       191 ~~~~--~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      ...+  ..|.+|+||||.|+.    .+...+++.|+.+|++...
T Consensus       366 ~~~~~~e~D~dg~TaLH~Aa~----~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  366 LFLNMSEADSDGNTALHLAAK----YGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             hhhcccccccCCchhhhHHHH----hccHHHHHHHHHcCCceee
Confidence            6665  559999999999999    7888999999999999743

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.3e-30  Score=254.04  Aligned_cols=195  Identities=24%  Similarity=0.191  Sum_probs=183.0

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  107 (434)
                      .+++||.|+..|+.++++.|++.|.++ +..+..|.||||+|+..|+.+++++|++.|+++ +..+.++.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINP-NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEG   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCC
Confidence            579999999999999999999999987 777889999999999999999999999999886 677889999999999999


Q ss_pred             CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009          108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT  187 (434)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~  187 (434)
                      +.++++.|++.++......+.+|.||||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad---~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~  156 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD---PDIPNTDKFSPLHLAVMMGDIKGIELLID  156 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999887677778899999999999999999999999999   78899999999999999999999999999


Q ss_pred             cccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          188 STAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       188 ~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      +|+ +++.+|..|.||||+|+.    .+..+++++|.+.|++...
T Consensus       157 ~g~-~~~~~d~~g~TpL~~A~~----~g~~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        157 HKA-CLDIEDCCGCTPLIIAMA----KGDIAICKMLLDSGANIDY  196 (413)
T ss_pred             cCC-CCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCCc
Confidence            988 999999999999999999    6778999999999998644

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.6e-29  Score=255.62  Aligned_cols=217  Identities=21%  Similarity=0.241  Sum_probs=154.7

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcC---CHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC-CHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLG---HEDFAKEILRQKPRIAEELDSRKSSALHIASQKG-YVGI   77 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~i   77 (434)
                      ++++++++.|++.+.++   +..+..|.||||+|+..|   +.++++.|++.|+++ +..|..|.||||+|+..| +.++
T Consensus        24 ~~~~~~v~~Ll~~ga~v---n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~i   99 (471)
T PHA03095         24 NVTVEEVRRLLAAGADV---NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDV   99 (471)
T ss_pred             CCCHHHHHHHHHcCCCc---ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHH
Confidence            57888888888888653   556778888888888888   888888888888887 777888888888888888 5888


Q ss_pred             HHHHHhhCCCCCccCCCCCCCHHHHHH--HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC--CHHHHHHHHHhc
Q 041009           78 VKALLQVIPDKCSDTDVDGRNPLHLAA--MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN--QLEALKFLLENM  153 (434)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpL~~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~  153 (434)
                      +++|++.|+++ +.+|..|.||||+|+  ..++.++++.|+++++++ ...|..|.||||+|+..+  +.+++++|++.|
T Consensus       100 v~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g  177 (471)
T PHA03095        100 IKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAG  177 (471)
T ss_pred             HHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence            88888888887 778888888888888  456788888888888876 556777888888777655  467777777777


Q ss_pred             CCCccccCCCCCCCcHHHHHHHc--CcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009          154 GDSELLNAKDDYGMTILHLAVAD--KQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       154 ~~~~~~~~~d~~g~t~LhlA~~~--~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                      ++   ++..|..|+||||+|+..  +..++++.|++.|. +++.+|..|.||||+|+....  ....+++.+.+.|++.
T Consensus       178 ~~---~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~-~~~~~d~~g~tpLh~Aa~~~~--~~~~~v~~ll~~g~di  250 (471)
T PHA03095        178 AD---VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGC-DPAATDMLGNTPLHSMATGSS--CKRSLVLPLLIAGISI  250 (471)
T ss_pred             CC---CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCC-CCcccCCCCCCHHHHHHhcCC--chHHHHHHHHHcCCCC
Confidence            66   455566666666666543  45556666655554 555555555555555554221  1123444445555443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.4e-29  Score=255.72  Aligned_cols=198  Identities=22%  Similarity=0.217  Sum_probs=176.3

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 041009           24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (434)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A  103 (434)
                      .+..+.||||.||..|+.++|+.|+++|+++ +..|..|.||||+||..|+.++++.|++.+... ..  ..+.+|++.|
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-~~--~~~~~~l~~a  108 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC-SV--FYTLVAIKDA  108 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc-cc--ccchhhHHHH
Confidence            4557899999999999999999999999987 788999999999999999999999999987654 22  5678899999


Q ss_pred             HHhCCH---------------------------------HHHHHHHHhCCcccccccCC-CChHHHHHHHcCCHHHHHHH
Q 041009          104 AMRGHI---------------------------------DVLEELARAKPDAASARLIW-GETILHLCVKHNQLEALKFL  149 (434)
Q Consensus       104 a~~g~~---------------------------------~~v~~Ll~~~~~~~~~~~~~-g~t~Lh~A~~~g~~~~v~~L  149 (434)
                      +..|+.                                 ++++.|+++|+++ +..+.. |.||||+|+.+|+.+++++|
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence            887763                                 3788899999998 555666 99999999999999999999


Q ss_pred             HHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       150 l~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      ++.|++   ++.+|..|+||||+|+..++.+++++|++.|+ +++.+|..|.||||+|+...   +..+++++|.+.|++
T Consensus       188 l~~gad---~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga-~in~~d~~g~TpLh~A~~~~---~~~~iv~~Ll~~gad  260 (477)
T PHA02878        188 LSYGAN---VNIPDKTNNSPLHHAVKHYNKPIVHILLENGA-STDARDKCGNTPLHISVGYC---KDYDILKLLLEHGVD  260 (477)
T ss_pred             HHCCCC---CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHhc---CCHHHHHHHHHcCCC
Confidence            999999   89999999999999999999999999999988 99999999999999998622   357899999999998


Q ss_pred             cccc
Q 041009          230 SAQD  233 (434)
Q Consensus       230 ~~~~  233 (434)
                      ....
T Consensus       261 vn~~  264 (477)
T PHA02878        261 VNAK  264 (477)
T ss_pred             CCcc
Confidence            7554

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.5e-29  Score=254.78  Aligned_cols=215  Identities=16%  Similarity=0.161  Sum_probs=154.2

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcC------CHHHHHHHHhcCCchhhccCCCCCcHHHHHHHc---C
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLG------HEDFAKEILRQKPRIAEELDSRKSSALHIASQK---G   73 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~---g   73 (434)
                      |+.++++.|++.+.++   +..+ .+.||||.|+..+      +.++++.|+++|+++ +.+|..|.||||.|+..   |
T Consensus        48 ~~~~iv~~Ll~~GAdv---n~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~  122 (494)
T PHA02989         48 VKIKIVKLLIDNGADV---NYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNIN  122 (494)
T ss_pred             CChHHHHHHHHcCCCc---cCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccC
Confidence            4677888888877653   3333 4678888776643      457788888888876 67788888888877654   5


Q ss_pred             CHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh--CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC----CHHHHH
Q 041009           74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR--GHIDVLEELARAKPDAASARLIWGETILHLCVKHN----QLEALK  147 (434)
Q Consensus        74 ~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g----~~~~v~  147 (434)
                      +.+++++|+++|+++.+.+|..|.||||+|+..  ++.+++++|+++|+++....+..|.||||.|+.++    +.++++
T Consensus       123 ~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~  202 (494)
T PHA02989        123 NCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIK  202 (494)
T ss_pred             cHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHH
Confidence            678888888888776456777888888887654  57788888888888775445667888888876654    778888


Q ss_pred             HHHHhcCCCcc-----------------------------------ccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccc
Q 041009          148 FLLENMGDSEL-----------------------------------LNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIE  192 (434)
Q Consensus       148 ~Ll~~~~~~~~-----------------------------------~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~  192 (434)
                      +|++.|++.+.                                   +|.+|..|+||||+|+..++.+++++|++.|+ |
T Consensus       203 ~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Ga-d  281 (494)
T PHA02989        203 YLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGD-D  281 (494)
T ss_pred             HHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCC-C
Confidence            88887765221                                   24556667777777777777777777777777 7


Q ss_pred             ccccccCCCCHHHHHHHccCCCchhHHHHHHHHcC
Q 041009          193 VNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG  227 (434)
Q Consensus       193 ~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g  227 (434)
                      ++.+|..|.||||+|+.    .+..++++.|++.+
T Consensus       282 in~~d~~G~TpL~~A~~----~~~~~iv~~LL~~~  312 (494)
T PHA02989        282 IYNVSKDGDTVLTYAIK----HGNIDMLNRILQLK  312 (494)
T ss_pred             ccccCCCCCCHHHHHHH----cCCHHHHHHHHhcC
Confidence            77777777777777777    45567777776654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=3e-29  Score=257.19  Aligned_cols=234  Identities=18%  Similarity=0.118  Sum_probs=190.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCC--HHHHHHHHhcCCchhhccCCCCCcHHHHH----------
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGH--EDFAKEILRQKPRIAEELDSRKSSALHIA----------   69 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A----------   69 (434)
                      .|+.++++.|++.+.++   +..|..|.||||+|+..|+  .++|+.|+++|+++ +.+|..|+||||+|          
T Consensus       189 ~~~~eIVklLLe~GADV---N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~E  264 (764)
T PHA02716        189 YVDIDILEWLCNNGVNV---NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPE  264 (764)
T ss_pred             cCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHH
Confidence            46789999999999654   6678999999999999995  58999999999997 88899999999975          


Q ss_pred             ---------------------------HHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH--hCCHHHHHHHHHhCC
Q 041009           70 ---------------------------SQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM--RGHIDVLEELARAKP  120 (434)
Q Consensus        70 ---------------------------a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~--~g~~~~v~~Ll~~~~  120 (434)
                                                 +..|+.+++++|++.|+++ +.+|.+|+||||+|+.  .++.+++++|+++|.
T Consensus       265 IvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA  343 (764)
T PHA02716        265 ITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN  343 (764)
T ss_pred             HHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence                                       3457889999999999987 8899999999999764  468999999999999


Q ss_pred             cccccccCCCChHHHHHHH--------------cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHH----HHcCcHHHH
Q 041009          121 DAASARLIWGETILHLCVK--------------HNQLEALKFLLENMGDSELLNAKDDYGMTILHLA----VADKQIEAI  182 (434)
Q Consensus       121 ~~~~~~~~~g~t~Lh~A~~--------------~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA----~~~~~~~iv  182 (434)
                      +. +.+|..|+||||+|+.              .++.+++++|+++|++   ++.+|..|+||||.+    ...++.+++
T Consensus       344 DI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD---In~kn~~G~TPLh~y~~~a~n~~~~dIv  419 (764)
T PHA02716        344 DL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD---ITAVNCLGYTPLTSYICTAQNYMYYDII  419 (764)
T ss_pred             CC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC---CCCcCCCCCChHHHHHHHHHhcChHHHH
Confidence            87 6788999999999875              3689999999999999   899999999999942    335678888


Q ss_pred             HHhhhccc------------------------------------------------------------ccccccccCCCC
Q 041009          183 KLLTTSTA------------------------------------------------------------IEVNAVTANGFT  202 (434)
Q Consensus       183 ~~Ll~~~~------------------------------------------------------------~~~~~~n~~g~t  202 (434)
                      ++|++.+.                                                            .+++..|..|.|
T Consensus       420 klLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~T  499 (764)
T PHA02716        420 DCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMT  499 (764)
T ss_pred             HHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCC
Confidence            88877532                                                            123556789999


Q ss_pred             HHHHHHHccCC-CchhHHHHHHHHcCCCccccCCCChhhhhhh
Q 041009          203 AWDILAQSKRD-TKDWDIGELLRRAGAISAQDLQLPANELAVI  244 (434)
Q Consensus       203 ~l~la~~~~~~-~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  244 (434)
                      |||+|+..... ....+++++|++.|++.........+++...
T Consensus       500 PLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A  542 (764)
T PHA02716        500 PLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLT  542 (764)
T ss_pred             HHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHH
Confidence            99999984321 1234677999999998766554444444333

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=5.6e-29  Score=251.61  Aligned_cols=216  Identities=19%  Similarity=0.139  Sum_probs=195.4

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcC-CHHHHHHHHhcCCchhhccCCCCCcHHHHHH--HcCCHHHHH
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLG-HEDFAKEILRQKPRIAEELDSRKSSALHIAS--QKGYVGIVK   79 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa--~~g~~~iv~   79 (434)
                      ++.++++.|++.+.++   +..|..|.||||+|+..| +.++++.|+++|+++ +..|..|.||||+|+  ..++.++++
T Consensus        61 ~~~~iv~~Ll~~Gadi---n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~  136 (471)
T PHA03095         61 KVKDIVRLLLEAGADV---NAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIR  136 (471)
T ss_pred             ChHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHH
Confidence            5899999999999664   667889999999999999 599999999999997 888999999999999  556899999


Q ss_pred             HHHhhCCCCCccCCCCCCCHHHHHHHhC--CHHHHHHHHHhCCcccccccCCCChHHHHHHHc--CCHHHHHHHHHhcCC
Q 041009           80 ALLQVIPDKCSDTDVDGRNPLHLAAMRG--HIDVLEELARAKPDAASARLIWGETILHLCVKH--NQLEALKFLLENMGD  155 (434)
Q Consensus        80 ~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~  155 (434)
                      +|++.|+++ +..|..|.||||+|+..+  +.++++.|++++++.... |..|+||||.++..  +..++++.|++.|++
T Consensus       137 ~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~  214 (471)
T PHA03095        137 LLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCD  214 (471)
T ss_pred             HHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC
Confidence            999999998 789999999999998876  689999999999998555 88999999999875  678999999999999


Q ss_pred             CccccCCCCCCCcHHHHHHHcCcH--HHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          156 SELLNAKDDYGMTILHLAVADKQI--EAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       156 ~~~~~~~d~~g~t~LhlA~~~~~~--~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                         .+.+|..|+||||+|+..++.  .+++.|++.|. ++|.+|.+|.||||+|+.    .+..+++++|++.|++...
T Consensus       215 ---~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~-din~~d~~g~TpLh~A~~----~~~~~~v~~LL~~gad~n~  285 (471)
T PHA03095        215 ---PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI-SINARNRYGQTPLHYAAV----FNNPRACRRLIALGADINA  285 (471)
T ss_pred             ---CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence               889999999999999999864  57888888877 999999999999999998    6678999999999998654

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=5.4e-29  Score=247.37  Aligned_cols=215  Identities=15%  Similarity=0.163  Sum_probs=185.0

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCC--HHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGH--EDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVK   79 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~   79 (434)
                      .|+.++++.|++.+.++   +.+|.+|.||||+|+..++  .++++.|+++|+++....|..|.|||| ||..|+.++++
T Consensus        82 ~g~~eiv~lLL~~GAdi---n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~  157 (446)
T PHA02946         82 INNNRIVAMLLTHGADP---NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFK  157 (446)
T ss_pred             cCCHHHHHHHHHCcCCC---CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHH
Confidence            68999999999998653   6679999999999998764  899999999999985567999999998 67789999999


Q ss_pred             HHHhhCCCCCccCCCCCCCHHHHHHHhC--CHHHHHHHHHhCCcccccccCCCChHHHHHHHcC--CHHHHHHHHHhcCC
Q 041009           80 ALLQVIPDKCSDTDVDGRNPLHLAAMRG--HIDVLEELARAKPDAASARLIWGETILHLCVKHN--QLEALKFLLENMGD  155 (434)
Q Consensus        80 ~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~  155 (434)
                      +|++.+.+. +.+|..|+||||.|+..+  +.+++++|+++++++ +.+|.+|+||||+|+.+|  +.+++++|++ |++
T Consensus       158 ~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad  234 (446)
T PHA02946        158 KIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD  234 (446)
T ss_pred             HHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC
Confidence            999999887 889999999999988755  468999999999988 677889999999999986  7899999985 777


Q ss_pred             CccccCCCCCCCcHHHHHHHcCc-HHHHHHhhhccccc-------------------cccc-ccCCCCHHHHHHHccCCC
Q 041009          156 SELLNAKDDYGMTILHLAVADKQ-IEAIKLLTTSTAIE-------------------VNAV-TANGFTAWDILAQSKRDT  214 (434)
Q Consensus       156 ~~~~~~~d~~g~t~LhlA~~~~~-~~iv~~Ll~~~~~~-------------------~~~~-n~~g~t~l~la~~~~~~~  214 (434)
                         +|.+|.+|+||||+|+..++ .+++++|+++++..                   ++.. +..|.||||+|+.    .
T Consensus       235 ---in~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~----~  307 (446)
T PHA02946        235 ---VNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVE----V  307 (446)
T ss_pred             ---CCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHH----c
Confidence               89999999999999999987 58899999887521                   1111 2357799999999    7


Q ss_pred             chhHHHHHHHHcCCCc
Q 041009          215 KDWDIGELLRRAGAIS  230 (434)
Q Consensus       215 ~~~~i~~~L~~~g~~~  230 (434)
                      +..+++++|++.|+..
T Consensus       308 g~~eivk~Ll~~~~~~  323 (446)
T PHA02946        308 GSIRCVKYLLDNDIIC  323 (446)
T ss_pred             CCHHHHHHHHHCCCcc
Confidence            7899999999988643

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=243.35  Aligned_cols=201  Identities=26%  Similarity=0.326  Sum_probs=176.1

Q ss_pred             CCChHHHHHHHhcCCC--cccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCch--------------hhccCCCCCcH
Q 041009            2 AGSVNTLLELRQQDPL--IVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRI--------------AEELDSRKSSA   65 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~--~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--------------~~~~d~~g~tp   65 (434)
                      +|..|.++-.+.+++.  ..+.+-.|..|.||||.|+..|+.++++.+|+.+...              ++..|.+|.||
T Consensus       197 s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tp  276 (929)
T KOG0510|consen  197 SGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTP  276 (929)
T ss_pred             hcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCch
Confidence            4666777777763331  1233445778999999999999999999999886542              45669999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHH-hCCcccccccCCCChHHHHHHHcCCHH
Q 041009           66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR-AKPDAASARLIWGETILHLCVKHNQLE  144 (434)
Q Consensus        66 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~  144 (434)
                      ||+||+.|+.+.++.|+..|++. +.++.++.||||.||++|+.+.++.|++ .+....+..|..|+||||+|+++|+..
T Consensus       277 LH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~  355 (929)
T KOG0510|consen  277 LHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDR  355 (929)
T ss_pred             HHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHH
Confidence            99999999999999999999998 8899999999999999999999999999 666666778889999999999999999


Q ss_pred             HHHHHHHhcCCCcccc--CCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHH
Q 041009          145 ALKFLLENMGDSELLN--AKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI  206 (434)
Q Consensus       145 ~v~~Ll~~~~~~~~~~--~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~l  206 (434)
                      +++.|+++|+..  .+  ..|.+|+||||+|+..|+..+++.|+.+|+ ++..+|+.|.+++|+
T Consensus       356 v~qlLl~~GA~~--~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga-~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  356 VVQLLLNKGALF--LNMSEADSDGNTALHLAAKYGNTSAVQKLISHGA-DIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHhcChhh--hcccccccCCchhhhHHHHhccHHHHHHHHHcCC-ceeeccccccccccc
Confidence            999999999983  22  569999999999999999999999999999 999999999999995

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-28  Score=258.60  Aligned_cols=218  Identities=22%  Similarity=0.190  Sum_probs=182.4

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.++   +..|..|.||||+||..|+.++|+.|+++|++. +..+..|.||||+|+..|+.++++.|
T Consensus       155 ~~~~~i~k~Ll~~Gadv---n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~L  230 (682)
T PHA02876        155 QDELLIAEMLLEGGADV---NAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAI  230 (682)
T ss_pred             CCcHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            58899999999999664   667899999999999999999999999999987 77788899999999998888888777


Q ss_pred             HhhCCCC----------------------------CccCCCCCCCHHHHHHHhCCH-HHHHHHHHhCCcccccccCCCCh
Q 041009           82 LQVIPDK----------------------------CSDTDVDGRNPLHLAAMRGHI-DVLEELARAKPDAASARLIWGET  132 (434)
Q Consensus        82 l~~~~~~----------------------------~~~~d~~g~tpL~~Aa~~g~~-~~v~~Ll~~~~~~~~~~~~~g~t  132 (434)
                      ++.+.+.                            .+..|..|.||||+|+..|+. ++++.|++.+.+. +..|.+|+|
T Consensus       231 l~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~T  309 (682)
T PHA02876        231 IDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGET  309 (682)
T ss_pred             HhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCC
Confidence            6654331                            245677889999999998886 5888888888876 666788999


Q ss_pred             HHHHHHHcC-CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHc-CcHHHHHHhhhcccccccccccCCCCHHHHHHHc
Q 041009          133 ILHLCVKHN-QLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD-KQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQS  210 (434)
Q Consensus       133 ~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~-~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~  210 (434)
                      |||+|+.+| ..+++++|++.|++   ++.+|..|+||||+|+.. ++.+++++|++.|+ +++.+|..|.||||+|+. 
T Consensus       310 pLh~Aa~~g~~~~~v~~Ll~~gad---in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~ga-din~~d~~G~TpLh~Aa~-  384 (682)
T PHA02876        310 PLYLMAKNGYDTENIRTLIMLGAD---VNAADRLYITPLHQASTLDRNKDIVITLLELGA-NVNARDYCDKTPIHYAAV-  384 (682)
T ss_pred             HHHHHHHhCCCHHHHHHHHHcCCC---CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCC-CCccCCCCCCCHHHHHHH-
Confidence            999999888 58888999988888   788888888999988875 46788888888877 888888888999998888 


Q ss_pred             cCCCchhHHHHHHHHcCCCccc
Q 041009          211 KRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       211 ~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                         .+..+++++|.+.|++...
T Consensus       385 ---~~~~~iv~~Ll~~gad~~~  403 (682)
T PHA02876        385 ---RNNVVIINTLLDYGADIEA  403 (682)
T ss_pred             ---cCCHHHHHHHHHCCCCccc
Confidence               5667888888888887544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.7e-28  Score=219.79  Aligned_cols=176  Identities=15%  Similarity=0.168  Sum_probs=157.5

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC--CHHHHHHHHhhCCCCCccCC-CCCCCHH
Q 041009           24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG--YVGIVKALLQVIPDKCSDTD-VDGRNPL  100 (434)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d-~~g~tpL  100 (434)
                      ..+.+.||||.|+..|+.+.|+.|++.    .+..|..|.||||+|+..+  +.+++++|+++|+++ +.++ ..|.|||
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpL   91 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSAL   91 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHH
Confidence            345689999999999999999999975    3567899999999999855  899999999999998 5665 5899999


Q ss_pred             HHHHHh---CCHHHHHHHHHhCCcccccccCCCChHHHHHHH--cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHH-HH
Q 041009          101 HLAAMR---GHIDVLEELARAKPDAASARLIWGETILHLCVK--HNQLEALKFLLENMGDSELLNAKDDYGMTILHL-AV  174 (434)
Q Consensus       101 ~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~Lhl-A~  174 (434)
                      |+|+..   ++.+++++|+++++++ +.+|..|.||||.|+.  +++.+++++|++.|++   ++.+|.+|+||||. |+
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad---in~~d~~g~t~Lh~~a~  167 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS---FLNKDFDNNNILYSYIL  167 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---cccccCCCCcHHHHHHH
Confidence            998764   4799999999999988 6789999999999986  4689999999999999   89999999999996 56


Q ss_pred             HcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          175 ADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       175 ~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      ..++.+++++|+++|+ +++.+|..|.||+|+|..
T Consensus       168 ~~~~~~iv~~Ll~~Ga-di~~~d~~g~tpl~la~~  201 (209)
T PHA02859        168 FHSDKKIFDFLTSLGI-DINETNKSGYNCYDLIKF  201 (209)
T ss_pred             hcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHhh
Confidence            7889999999999988 999999999999999976

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.5e-28  Score=253.94  Aligned_cols=219  Identities=20%  Similarity=0.203  Sum_probs=188.5

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCH-HHHHHHHhcCCchhhccCCCCCcHHHHHHHcC-CHHHHHH
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHE-DFAKEILRQKPRIAEELDSRKSSALHIASQKG-YVGIVKA   80 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~iv~~   80 (434)
                      |+.+.++.|++.+.+   .+..|..|.||||+|+..|+. ++++.|++.+.++ +..|..|.||||+|+..| +.++++.
T Consensus       251 ~~~~~~~~Ll~~g~~---vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~  326 (682)
T PHA02876        251 EDLETSLLLYDAGFS---VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRT  326 (682)
T ss_pred             CCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHH
Confidence            455556666665533   355678899999999999986 6899999999887 788999999999999999 5999999


Q ss_pred             HHhhCCCCCccCCCCCCCHHHHHHHh-CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccc
Q 041009           81 LLQVIPDKCSDTDVDGRNPLHLAAMR-GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELL  159 (434)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpL~~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  159 (434)
                      |+..+++. +..|..|.||||+|+.. ++.++++.|++.+.+. +.+|..|.||||+|+..|+.+++++|++.|++   +
T Consensus       327 Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad---~  401 (682)
T PHA02876        327 LIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYGAD---I  401 (682)
T ss_pred             HHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---c
Confidence            99999987 78999999999999986 4788999999999887 67788999999999999999999999999999   8


Q ss_pred             cCCCCCCCcHHHHHHHcCc-HHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccccC
Q 041009          160 NAKDDYGMTILHLAVADKQ-IEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDL  234 (434)
Q Consensus       160 ~~~d~~g~t~LhlA~~~~~-~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~~  234 (434)
                      +..+..|.||||+|+..+. ..++++|+++|+ ++|.+|.+|+||||+|+...   ...+++++|.+.|++.....
T Consensus       402 ~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~ga-din~~d~~G~TpLh~Aa~~~---~~~~iv~lLl~~Gad~n~~d  473 (682)
T PHA02876        402 EALSQKIGTALHFALCGTNPYMSVKTLIDRGA-NVNSKNKDLSTPLHYACKKN---CKLDVIEMLLDNGADVNAIN  473 (682)
T ss_pred             cccCCCCCchHHHHHHcCCHHHHHHHHHhCCC-CCCcCCCCCChHHHHHHHhC---CcHHHHHHHHHCCCCCCCCC
Confidence            8899999999999987665 567899999987 99999999999999998722   24689999999999865543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1e-28  Score=239.16  Aligned_cols=200  Identities=23%  Similarity=0.224  Sum_probs=179.1

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  107 (434)
                      ..+-.+.|+.+|+.+-|+.+++.....++..|.+|.|+||+||.+++.+++++|+++++++...-...+.||||+|+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            35678899999999999999999444458889999999999999999999999999999994444478999999999999


Q ss_pred             CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009          108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT  187 (434)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~  187 (434)
                      ++.++..|+++|+++ ..+|.+|.|++|+|++.|+.-.+-+++.++++   ++.+|.+|+||||+|+.+|+...++.|++
T Consensus       124 ~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d---~d~~D~~grTpLmwAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  124 HISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD---IDLRDNNGRTPLMWAAYKGFALFVRRLLK  199 (600)
T ss_pred             cHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhccc---CCCcCCCCCCHHHHHHHhcccHHHHHHHH
Confidence            999999999999999 88899999999999999999999999999988   89999999999999999999988999999


Q ss_pred             cccccccccc-cCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccccCCC
Q 041009          188 STAIEVNAVT-ANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQL  236 (434)
Q Consensus       188 ~~~~~~~~~n-~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  236 (434)
                      -++ +++..| ++|+||||.|+.    .+..+.+.++.+.|+........
T Consensus       200 f~a-~~~~~d~~~g~TpLHwa~~----~gN~~~v~Ll~~g~~~~d~~~~~  244 (600)
T KOG0509|consen  200 FGA-SLLLTDDNHGNTPLHWAVV----GGNLTAVKLLLEGGADLDKTNTN  244 (600)
T ss_pred             hcc-cccccccccCCchHHHHHh----cCCcceEehhhhcCCcccccccC
Confidence            988 888888 999999999998    55566666777887876655544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.3e-27  Score=240.39  Aligned_cols=216  Identities=18%  Similarity=0.174  Sum_probs=180.2

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhc--CCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC------
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALL--GHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG------   73 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g------   73 (434)
                      +++.++++.|++.+.++   +.. ..|.||||.++..  ++.++|+.|+++|+++ +.++ .+.||||.|+.++      
T Consensus        13 ~~~~~~v~~LL~~Gadv---N~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv-n~~~-~~~tpL~~a~~~~~~~~~~   86 (494)
T PHA02989         13 TVDKNALEFLLRTGFDV---NEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV-NYKG-YIETPLCAVLRNREITSNK   86 (494)
T ss_pred             cCcHHHHHHHHHcCCCc---ccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc-cCCC-CCCCcHHHHHhccCcchhh
Confidence            47899999999999664   444 4689999876654  3789999999999998 5555 5799999998754      


Q ss_pred             CHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh---CCHHHHHHHHHhCCcccccccCCCChHHHHHHHc--CCHHHHHH
Q 041009           74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR---GHIDVLEELARAKPDAASARLIWGETILHLCVKH--NQLEALKF  148 (434)
Q Consensus        74 ~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~  148 (434)
                      +.+++++|++.|+++ +.+|.+|.||||.|+..   |+.+++++|+++|+++....|..|+||||+|+..  ++.+++++
T Consensus        87 ~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~  165 (494)
T PHA02989         87 IKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKI  165 (494)
T ss_pred             HHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHH
Confidence            478999999999998 88999999999988765   6799999999999998567788999999998764  58999999


Q ss_pred             HHHhcCCCccccC-CCCCCCcHHHHHHHcC----cHHHHHHhhhcccccc------------------------------
Q 041009          149 LLENMGDSELLNA-KDDYGMTILHLAVADK----QIEAIKLLTTSTAIEV------------------------------  193 (434)
Q Consensus       149 Ll~~~~~~~~~~~-~d~~g~t~LhlA~~~~----~~~iv~~Ll~~~~~~~------------------------------  193 (434)
                      |+++|++   ++. .|..|.||||+|+..+    +.+++++|+++|+ ++                              
T Consensus       166 Ll~~Gad---i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga-~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~  241 (494)
T PHA02989        166 LLSFGVN---LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV-NIETNNNGSESVLESFLDNNKILSKKEFKVLN  241 (494)
T ss_pred             HHHcCCC---ccccccccCCChHHHHHhcccccccHHHHHHHHhCCC-CccccCCccccHHHHHHHhchhhcccchHHHH
Confidence            9999999   676 6889999999998764    8899999998875 44                              


Q ss_pred             --------cccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          194 --------NAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       194 --------~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                              |.+|..|.||||+|+.    .+..+++++|++.|++...
T Consensus       242 ~l~~~advn~~d~~G~TpL~~Aa~----~~~~~~v~~LL~~Gadin~  284 (494)
T PHA02989        242 FILKYIKINKKDKKGFNPLLISAK----VDNYEAFNYLLKLGDDIYN  284 (494)
T ss_pred             HHHhCCCCCCCCCCCCCHHHHHHH----hcCHHHHHHHHHcCCCccc
Confidence                    4556678888888887    5667888888888887644

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.1e-27  Score=242.05  Aligned_cols=211  Identities=20%  Similarity=0.186  Sum_probs=173.2

Q ss_pred             hHHHHHHHhcCCCcccccccCCCCCCHHHHHHhc---CCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCH----HH
Q 041009            5 VNTLLELRQQDPLIVERPTVNCLSETPLHVAALL---GHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYV----GI   77 (434)
Q Consensus         5 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~----~i   77 (434)
                      ++.+++|+.++...   +..|.+|+||||+||..   |+.++|+.|++.|+++ +..|..|+||||+|+..|+.    ++
T Consensus        12 ~~~~~~l~~~~~~~---~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~   87 (661)
T PHA02917         12 LDELKQMLRDRDPN---DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDI   87 (661)
T ss_pred             HHHHHHHHhccCcc---cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHH
Confidence            57889999766442   55689999999997555   8899999999999998 67899999999999999985    45


Q ss_pred             HHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHH--HHcCCHHHHHHHHHhcCC
Q 041009           78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC--VKHNQLEALKFLLENMGD  155 (434)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~  155 (434)
                      ++.|++.+... +..|  ..+++|.|+.+|+.+++++|+++|.++ +.+|.+|+||||.+  +.+|+.+++++|+++|++
T Consensus        88 ~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~  163 (661)
T PHA02917         88 AMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS  163 (661)
T ss_pred             HHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC
Confidence            67888775542 3333  236788899999999999999999998 67788999999965  457899999999999999


Q ss_pred             CccccCCC---CCC-----------CcHHHHHHH-----------cCcHHHHHHhhhcccccccccccCCCCHHHHHHHc
Q 041009          156 SELLNAKD---DYG-----------MTILHLAVA-----------DKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQS  210 (434)
Q Consensus       156 ~~~~~~~d---~~g-----------~t~LhlA~~-----------~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~  210 (434)
                         ++.+|   ..|           .||||+|+.           .++.+++++|+++|+ |+|.+|.+|.||||+|+..
T Consensus       164 ---vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga-dvn~~d~~G~TpLh~A~~~  239 (661)
T PHA02917        164 ---VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI-KPSSIDKNYCTALQYYIKS  239 (661)
T ss_pred             ---ccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC-CcccCCCCCCcHHHHHHHc
Confidence               55544   334           599999986           468999999999998 9999999999999999983


Q ss_pred             cCCCchhHHHHHHHHcCCCc
Q 041009          211 KRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       211 ~~~~~~~~i~~~L~~~g~~~  230 (434)
                      ..  ...+++++|.+ |++.
T Consensus       240 g~--~~~eivk~Li~-g~d~  256 (661)
T PHA02917        240 SH--IDIDIVKLLMK-GIDN  256 (661)
T ss_pred             CC--CcHHHHHHHHh-CCcc
Confidence            32  12479999975 6643

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=9e-28  Score=223.55  Aligned_cols=213  Identities=27%  Similarity=0.321  Sum_probs=180.9

Q ss_pred             CCChHHHHHHHhcCC--CcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhh--------ccCCCCCcHHHHHHH
Q 041009            2 AGSVNTLLELRQQDP--LIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAE--------ELDSRKSSALHIASQ   71 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~--------~~d~~g~tpLh~Aa~   71 (434)
                      .|++..+..|+....  ++.+....+.+|.|||-+||++||.++|++|+++......        -...+|-+||..|+.
T Consensus        14 ~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsa   93 (615)
T KOG0508|consen   14 DGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASA   93 (615)
T ss_pred             hhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhc
Confidence            366666777765433  2222233456789999999999999999999996433212        224678899999999


Q ss_pred             cCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHH
Q 041009           72 KGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE  151 (434)
Q Consensus        72 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  151 (434)
                      .||.++|+.|+++++++ +....-..|||-.||..|+.+++++|+++++|+ +..|+.|.|.||+|+..|+.+++++|++
T Consensus        94 AGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle  171 (615)
T KOG0508|consen   94 AGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLE  171 (615)
T ss_pred             cCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHH
Confidence            99999999999999887 556666779999999999999999999999998 7889999999999999999999999999


Q ss_pred             hcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHH
Q 041009          152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR  225 (434)
Q Consensus       152 ~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~  225 (434)
                      .|+|   +|.++..|||+||.+++.|+.+++++|+++|+ .++ +|..|.|||-.|+.    .+..++++.|..
T Consensus       172 ~gAD---vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga-~i~-~d~~GmtPL~~Aa~----tG~~~iVe~L~~  236 (615)
T KOG0508|consen  172 QGAD---VNAKSYKGNTALHDCAESGSVDIVQLLLKHGA-KID-VDGHGMTPLLLAAV----TGHTDIVERLLQ  236 (615)
T ss_pred             hCCC---cchhcccCchHHHhhhhcccHHHHHHHHhCCc-eee-ecCCCCchHHHHhh----hcchHHHHHHhc
Confidence            9999   99999999999999999999999999999987 443 46669999999988    677888888886

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=4.1e-26  Score=219.88  Aligned_cols=207  Identities=18%  Similarity=0.106  Sum_probs=175.7

Q ss_pred             HHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchh-----hccCCCCCcHHHHHHH--cCCHHHHHHH
Q 041009            9 LELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIA-----EELDSRKSSALHIASQ--KGYVGIVKAL   81 (434)
Q Consensus         9 ~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~Aa~--~g~~~iv~~L   81 (434)
                      ++++..+.++   +..+.+|     +|+..+..|+++.|+.++.+..     -..+..++|+||+|+.  .|+.+++++|
T Consensus        66 ~~~~~~~~~i---~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         66 DYFRIHRDNI---DQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHcCcch---hhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            3455565443   3334444     8999999999999999999862     1578889999999999  8999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCccccccc-----CCCChHHHHHHHcCCHHHHHHHHHhcCCC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARL-----IWGETILHLCVKHNQLEALKFLLENMGDS  156 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~-----~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  156 (434)
                      +++|+++ +.  .++.||+|.|+..|+.+++++|+++|.+..+..+     ..+.+++|.|+.+++.+++++|+++|++ 
T Consensus       138 I~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-  213 (437)
T PHA02795        138 VDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-  213 (437)
T ss_pred             HHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-
Confidence            9999998 44  3558999999999999999999999975433321     3478899999999999999999999999 


Q ss_pred             ccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccC----CCchhHHHHHHHHcCCCc
Q 041009          157 ELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR----DTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       157 ~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~----~~~~~~i~~~L~~~g~~~  230 (434)
                        +|.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+....    ...+.+++++|++.|+..
T Consensus       214 --IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA-dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        214 --INQLDAGGRTLLYRAIYAGYIDLVSWLLENGA-NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             --cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence              99999999999999999999999999999998 999999999999999998442    123578999999988754

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.3e-25  Score=227.34  Aligned_cols=217  Identities=20%  Similarity=0.209  Sum_probs=181.7

Q ss_pred             ChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhc--CCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHc-----CCHH
Q 041009            4 SVNTLLELRQQDPLIVERPTVNCLSETPLHVAALL--GHEDFAKEILRQKPRIAEELDSRKSSALHIASQK-----GYVG   76 (434)
Q Consensus         4 ~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~-----g~~~   76 (434)
                      +++.|+.|++....    +. ..+|.|+++.+...  ++.++|+.|+++|+++ +..|..|.||||.|+.+     ++.+
T Consensus        17 ~~~~v~~ll~~~~~----~~-~~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKSCNP----NE-IVNEYSIFQKYLQRDSPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhcCCh----hh-hcccchHHHHHHhCCCCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            56789999975421    11 13477877654444  5899999999999987 88899999999999864     6789


Q ss_pred             HHHHHHhhCCCCCccCCCCCCCHHHHHHHhC---CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCC---HHHHHHHH
Q 041009           77 IVKALLQVIPDKCSDTDVDGRNPLHLAAMRG---HIDVLEELARAKPDAASARLIWGETILHLCVKHNQ---LEALKFLL  150 (434)
Q Consensus        77 iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll  150 (434)
                      ++++|++.|+++ +.+|.+|.||||+|+..|   +.+++++|+++|+++ ...|.+|.||||+|++.++   .+++++|+
T Consensus        91 iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll  168 (489)
T PHA02798         91 IVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLL  168 (489)
T ss_pred             HHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHH
Confidence            999999999997 889999999999999986   789999999999998 7788999999999999988   99999999


Q ss_pred             HhcCCCccccCCC-CCCCcHHHHHHHc----CcHHHHHHhhhccc-----------------------------------
Q 041009          151 ENMGDSELLNAKD-DYGMTILHLAVAD----KQIEAIKLLTTSTA-----------------------------------  190 (434)
Q Consensus       151 ~~~~~~~~~~~~d-~~g~t~LhlA~~~----~~~~iv~~Ll~~~~-----------------------------------  190 (434)
                      +.|++   ++.++ ..|.||||.++..    ++.+++++|+++|+                                   
T Consensus       169 ~~gad---in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l  245 (489)
T PHA02798        169 EKGVD---INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFI  245 (489)
T ss_pred             HhCCC---cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHH
Confidence            99999   77774 5789999998764    47888888887653                                   


Q ss_pred             ---ccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccccCC
Q 041009          191 ---IEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQ  235 (434)
Q Consensus       191 ---~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~~~  235 (434)
                         .|+|.+|..|.||||+|+.    .+..+++++|++.|++......
T Consensus       246 ~~~~dvN~~d~~G~TPL~~A~~----~~~~~~v~~LL~~GAdin~~d~  289 (489)
T PHA02798        246 FSYIDINQVDELGFNPLYYSVS----HNNRKIFEYLLQLGGDINIITE  289 (489)
T ss_pred             HhcCCCCCcCcCCccHHHHHHH----cCcHHHHHHHHHcCCcccccCC
Confidence               2566788899999999998    6678999999999998655433

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3.5e-25  Score=198.30  Aligned_cols=164  Identities=19%  Similarity=0.161  Sum_probs=144.7

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcC--CHHHHHHHHhcCCchhhccC-CCCCcHHHHHHHc---CCH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLG--HEDFAKEILRQKPRIAEELD-SRKSSALHIASQK---GYV   75 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~---g~~   75 (434)
                      .|+++.++.|++..      +..|..|.||||+|+..+  +.++++.|+++|+++ +..+ ..|.||||+|+..   ++.
T Consensus        31 ~~~~~~vk~Li~~~------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~  103 (209)
T PHA02859         31 KDDIEGVKKWIKFV------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEP  103 (209)
T ss_pred             hCcHHHHHHHHHhh------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccH
Confidence            58999999999752      346788999999999854  899999999999998 5555 5899999998764   479


Q ss_pred             HHHHHHHhhCCCCCccCCCCCCCHHHHHHH--hCCHHHHHHHHHhCCcccccccCCCChHHHH-HHHcCCHHHHHHHHHh
Q 041009           76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAM--RGHIDVLEELARAKPDAASARLIWGETILHL-CVKHNQLEALKFLLEN  152 (434)
Q Consensus        76 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~-A~~~g~~~~v~~Ll~~  152 (434)
                      +++++|+++|+++ +.+|.+|.||||.|+.  .++.+++++|++++.+. ..+|.+|.||||. ++..++.+++++|++.
T Consensus       104 eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~  181 (209)
T PHA02859        104 EILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDKKIFDFLTSL  181 (209)
T ss_pred             HHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCHHHHHHHHHc
Confidence            9999999999998 8899999999999876  46899999999999887 6678999999996 5678899999999999


Q ss_pred             cCCCccccCCCCCCCcHHHHHHHcC
Q 041009          153 MGDSELLNAKDDYGMTILHLAVADK  177 (434)
Q Consensus       153 ~~~~~~~~~~d~~g~t~LhlA~~~~  177 (434)
                      |++   ++.+|..|.||||+|...+
T Consensus       182 Gad---i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        182 GID---INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCC---CCCCCCCCCCHHHHHhhhh
Confidence            999   8999999999999998764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=7.7e-25  Score=225.95  Aligned_cols=217  Identities=17%  Similarity=0.084  Sum_probs=175.1

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHH----HHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHED----FAKEILRQKPRIAEELDSRKSSALHIASQKGYVGI   77 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i   77 (434)
                      .|+.++++.|++.+.++   +..+.+|.||||.|+..|+.+    +++.|++.+... +..|  ..+++|+|+..|+.++
T Consensus        45 ~~~~~~v~~Ll~~ga~v---~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~  118 (661)
T PHA02917         45 CNNVEVVKLLLDSGTNP---LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--FNIFSYMKSKNVDVDL  118 (661)
T ss_pred             cCcHHHHHHHHHCCCCc---cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHH
Confidence            48899999999999664   567889999999999999954    567787765432 3323  2377888999999999


Q ss_pred             HHHHHhhCCCCCccCCCCCCCHHHHH--HHhCCHHHHHHHHHhCCccccc--ccCCC-----------ChHHHHHHH---
Q 041009           78 VKALLQVIPDKCSDTDVDGRNPLHLA--AMRGHIDVLEELARAKPDAASA--RLIWG-----------ETILHLCVK---  139 (434)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpL~~A--a~~g~~~~v~~Ll~~~~~~~~~--~~~~g-----------~t~Lh~A~~---  139 (434)
                      +++|+++|+++ +.+|.+|.||||.|  +..|+.+++++|+++|++....  .+..|           .||||+|+.   
T Consensus       119 vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~  197 (661)
T PHA02917        119 IKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHL  197 (661)
T ss_pred             HHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcc
Confidence            99999999998 89999999999964  4578999999999999987422  22233           599999986   


Q ss_pred             --------cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcH--HHHHHhhhccccccc----ccccCCCCHHH
Q 041009          140 --------HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQI--EAIKLLTTSTAIEVN----AVTANGFTAWD  205 (434)
Q Consensus       140 --------~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~--~iv~~Ll~~~~~~~~----~~n~~g~t~l~  205 (434)
                              +++.+++++|+++|++   +|.+|.+|+||||+|+..|+.  +++++|++ |+ +++    ..|..|.+|++
T Consensus       198 ~~~~~~~~~~~~eiv~~Li~~Gad---vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~-d~~~~~~~~~~~~~~~~~  272 (661)
T PHA02917        198 YSESDTRAYVRPEVVKCLINHGIK---PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI-DNTAYSYIDDLTCCTRGI  272 (661)
T ss_pred             cccccccccCcHHHHHHHHHCCCC---cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC-cccccccccCcccccchH
Confidence                    5689999999999999   999999999999999999985  79999975 55 554    45667888888


Q ss_pred             HHHHcc-----CCCchhHHHHHHHHcCCCc
Q 041009          206 ILAQSK-----RDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       206 la~~~~-----~~~~~~~i~~~L~~~g~~~  230 (434)
                      ++....     ......+++++|+++|+..
T Consensus       273 ~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~  302 (661)
T PHA02917        273 MADYLNSDYRYNKDVDLDLVKLFLENGKPH  302 (661)
T ss_pred             HHHHHHhhccccccchHHHHHHHHhCCCCC
Confidence            887311     1123678999999999863

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=219.09  Aligned_cols=217  Identities=18%  Similarity=0.135  Sum_probs=180.2

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHH--HHhcCCHHHHHHHHh------------------------------
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHV--AALLGHEDFAKEILR------------------------------   49 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~--Aa~~g~~~~v~~Ll~------------------------------   49 (434)
                      +++.|+++.|++.+.++   +.+|.+|+||||+  |+..|+.|+|+.|++                              
T Consensus       212 ~n~~eiv~lLIs~GadI---N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (672)
T PHA02730        212 SLSKDVIKCLIDNNVSI---HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRV  288 (672)
T ss_pred             ccCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhc
Confidence            56899999999999654   7789999999995  656688999999999                              


Q ss_pred             --cCCchhhc--------------------cCCCCCc---------------------HHHHHHHcC---CHHHHHHHHh
Q 041009           50 --QKPRIAEE--------------------LDSRKSS---------------------ALHIASQKG---YVGIVKALLQ   83 (434)
Q Consensus        50 --~~~~~~~~--------------------~d~~g~t---------------------pLh~Aa~~g---~~~iv~~Ll~   83 (434)
                        ++.+. ..                    .|..|.+                     .||.-...+   +.+++++|++
T Consensus       289 ~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs  367 (672)
T PHA02730        289 TPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD  367 (672)
T ss_pred             ccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence              45544 22                    4666755                     677777766   5899999999


Q ss_pred             hCCCCCccCCCCCCCHHHHHHHhCC----HHHHHHHHHhCCc-ccccccCCCChHHHH---HHHcC---------CHHHH
Q 041009           84 VIPDKCSDTDVDGRNPLHLAAMRGH----IDVLEELARAKPD-AASARLIWGETILHL---CVKHN---------QLEAL  146 (434)
Q Consensus        84 ~~~~~~~~~d~~g~tpL~~Aa~~g~----~~~v~~Ll~~~~~-~~~~~~~~g~t~Lh~---A~~~g---------~~~~v  146 (434)
                      +|+++ +. +..|.||||+|+..++    .+++++|+++|++ ..+.+|.+|.||||.   |...+         ..+++
T Consensus       368 ~GAdI-N~-k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~iv  445 (672)
T PHA02730        368 NGATM-DK-TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVF  445 (672)
T ss_pred             CCCCC-Cc-CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHH
Confidence            99998 54 4789999999998885    8999999999874 346778899999994   33332         23579


Q ss_pred             HHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccccccccc-CCCCHHHHHHHccCCCchhHHHHHHHH
Q 041009          147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTA-NGFTAWDILAQSKRDTKDWDIGELLRR  225 (434)
Q Consensus       147 ~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~-~g~t~l~la~~~~~~~~~~~i~~~L~~  225 (434)
                      ++|+++|++   +|.+|..|+||||+|+..++.+++++|+++|+ +++..|+ .|.||+|.|+...  .+..+++++|++
T Consensus       446 k~LIs~GAD---INakD~~G~TPLh~Aa~~~~~eive~LI~~GA-dIN~~d~~~g~TaL~~Aa~~~--~~~~eIv~~LLs  519 (672)
T PHA02730        446 DILSKYMDD---IDMIDNENKTLLYYAVDVNNIQFARRLLEYGA-SVNTTSRSIINTAIQKSSYRR--ENKTKLVDLLLS  519 (672)
T ss_pred             HHHHhcccc---hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCC-CCCCCCCcCCcCHHHHHHHhh--cCcHHHHHHHHH
Confidence            999999999   99999999999999999999999999999999 9999997 6999999987621  245789999999


Q ss_pred             cCCCc
Q 041009          226 AGAIS  230 (434)
Q Consensus       226 ~g~~~  230 (434)
                      +|+..
T Consensus       520 ~ga~i  524 (672)
T PHA02730        520 YHPTL  524 (672)
T ss_pred             cCCCH
Confidence            88764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.8e-25  Score=212.52  Aligned_cols=211  Identities=13%  Similarity=0.052  Sum_probs=173.3

Q ss_pred             CChHHHHHHHhcCCCccc---ccccCCCCCCHHHHHHh--cCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHH
Q 041009            3 GSVNTLLELRQQDPLIVE---RPTVNCLSETPLHVAAL--LGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGI   77 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~---~~~~~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i   77 (434)
                      +..|+++.|+.++.++.-   .-..+.+++|+||.|+.  .|+.++|+.|+++|+++ +.  .++.||||.|+..|+.++
T Consensus        88 ~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eI  164 (437)
T PHA02795         88 TYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSV  164 (437)
T ss_pred             chHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHH
Confidence            567899999999876320   00356779999999999  89999999999999998 44  356899999999999999


Q ss_pred             HHHHHhhCCCCCccC-----CCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 041009           78 VKALLQVIPDKCSDT-----DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN  152 (434)
Q Consensus        78 v~~Ll~~~~~~~~~~-----d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  152 (434)
                      +++|+++|++..+..     +..+.+++|.|+..++.++++.|++++++. +.+|..|.||||+|+.+|+.+++++|+++
T Consensus       165 Vk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~  243 (437)
T PHA02795        165 VEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLEN  243 (437)
T ss_pred             HHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            999999997543322     234789999999999999999999999988 77899999999999999999999999999


Q ss_pred             cCCCccccCCCCCCCcHHHHHHHcC--------cHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHH
Q 041009          153 MGDSELLNAKDDYGMTILHLAVADK--------QIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLR  224 (434)
Q Consensus       153 ~~~~~~~~~~d~~g~t~LhlA~~~~--------~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~  224 (434)
                      |++   ++.+|..|+||||+|+..|        +.+++++|+++|+ +++.....+   ...      .....++.+.+.
T Consensus       244 GAd---IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga-dI~~~~~~~---~~~------~~~n~~~ik~lI  310 (437)
T PHA02795        244 GAN---VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL-SIDCIKLAI---LNN------TIENHDVIKLCI  310 (437)
T ss_pred             CCC---CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC-CCCchhHHh---hhc------ccchHHHHHHHH
Confidence            999   8999999999999999988        4699999999888 766544322   110      112456777777


Q ss_pred             HcCCCc
Q 041009          225 RAGAIS  230 (434)
Q Consensus       225 ~~g~~~  230 (434)
                      +.+...
T Consensus       311 ~y~~~l  316 (437)
T PHA02795        311 KYFMMV  316 (437)
T ss_pred             HHHHhc
Confidence            765543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=5.2e-25  Score=235.19  Aligned_cols=176  Identities=24%  Similarity=0.314  Sum_probs=163.2

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  104 (434)
                      +..+.++||.||..|+.++++.|++.|.++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||.|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHH
Confidence            445789999999999999999999999987 888999999999999999999999999999987 889999999999999


Q ss_pred             HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009          105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL  184 (434)
Q Consensus       105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~  184 (434)
                      ..|+.++++.|++.+...   ....+.++||.|+.+|+.++++.|+++|++   +|.+|.+|+||||+|+..|+.+++++
T Consensus       600 ~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad---in~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        600 SAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN---VDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            999999999999876543   234578999999999999999999999999   89999999999999999999999999


Q ss_pred             hhhcccccccccccCC-CCHHHHHHH
Q 041009          185 LTTSTAIEVNAVTANG-FTAWDILAQ  209 (434)
Q Consensus       185 Ll~~~~~~~~~~n~~g-~t~l~la~~  209 (434)
                      |+++|+ |++..|..| .||.+++..
T Consensus       674 Ll~~GA-dv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        674 LIMNGA-DVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHcCC-CCCCCCCCCCCCHHHHHHH
Confidence            999998 999999988 999998754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=4.5e-25  Score=205.65  Aligned_cols=180  Identities=24%  Similarity=0.325  Sum_probs=160.5

Q ss_pred             CCChHHHHHHHhcCC---Cc---ccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCH
Q 041009            2 AGSVNTLLELRQQDP---LI---VERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYV   75 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~---~~---~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~   75 (434)
                      +|+.+++++|+++-.   +.   .....-+..|-+||..|+..||.++|+.|+++++++ |.......|||..||..|+.
T Consensus        52 nGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~l  130 (615)
T KOG0508|consen   52 NGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHL  130 (615)
T ss_pred             cCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchh
Confidence            699999999998321   11   112223456889999999999999999999999776 77778888999999999999


Q ss_pred             HHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009           76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD  155 (434)
Q Consensus        76 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  155 (434)
                      +++++|+++++++ .+.|..|.|.||+||.+||.+++++|++.++|. +.++..|+|+||.|++.|+.+++++|+.+|+.
T Consensus       131 eivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~  208 (615)
T KOG0508|consen  131 EIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAK  208 (615)
T ss_pred             HHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCce
Confidence            9999999999998 899999999999999999999999999999998 77789999999999999999999999999986


Q ss_pred             CccccCCCCCCCcHHHHHHHcCcHHHHHHhhhc
Q 041009          156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTS  188 (434)
Q Consensus       156 ~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~  188 (434)
                          -.+|..|.|||..|+..|+.+++++|++.
T Consensus       209 ----i~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  209 ----IDVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             ----eeecCCCCchHHHHhhhcchHHHHHHhcC
Confidence                35678899999999999999999999963

>PHA02792 ankyrin-like protein; Provisional

Probab=99.92  E-value=4.4e-24  Score=213.12  Aligned_cols=221  Identities=12%  Similarity=0.042  Sum_probs=181.4

Q ss_pred             CCCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHh-cCCHHHHHHHHhcCCch-------------------------
Q 041009            1 MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAAL-LGHEDFAKEILRQKPRI-------------------------   54 (434)
Q Consensus         1 ~~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~-~g~~~~v~~Ll~~~~~~-------------------------   54 (434)
                      .+||+|+++.|++++.++   +..+..|.||+|+|+. .|+.|++++|+++|++.                         
T Consensus        81 ~n~~lElvk~LI~~GAdv---N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~  157 (631)
T PHA02792         81 DNIDIELLKLLISKGLEI---NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDD  157 (631)
T ss_pred             hcccHHHHHHHHHcCCCc---ccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhh
Confidence            369999999999999764   5667779999999966 69999999999999752                         


Q ss_pred             ----------hhccCCCCCcHHHHHHHcC-------CHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC--CHHHHHHH
Q 041009           55 ----------AEELDSRKSSALHIASQKG-------YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG--HIDVLEEL  115 (434)
Q Consensus        55 ----------~~~~d~~g~tpLh~Aa~~g-------~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~~~v~~L  115 (434)
                                .+..|..|.||||+|+..+       +.|+++.|+++|++. +..|..|.||||+|+.+.  ..|+++.|
T Consensus       158 ~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L  236 (631)
T PHA02792        158 ELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDAL  236 (631)
T ss_pred             hccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHH
Confidence                      2345677999999999999       899999999999998 778999999999999998  66777777


Q ss_pred             HHhCCcc-------------------------------------------------------------------------
Q 041009          116 ARAKPDA-------------------------------------------------------------------------  122 (434)
Q Consensus       116 l~~~~~~-------------------------------------------------------------------------  122 (434)
                      +...-+-                                                                         
T Consensus       237 ~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~  316 (631)
T PHA02792        237 FDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSY  316 (631)
T ss_pred             HhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhc
Confidence            6621100                                                                         


Q ss_pred             ---------------cccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCC--CcHHHHHHHcCcHH---HH
Q 041009          123 ---------------ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYG--MTILHLAVADKQIE---AI  182 (434)
Q Consensus       123 ---------------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g--~t~LhlA~~~~~~~---iv  182 (434)
                                     .......+.++++.|+.+|+.+++++|+++|++   ++.+|.+|  .||||+|......+   ++
T Consensus       317 ~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD---IN~kD~~g~~~TpLh~A~~n~~~~v~~Il  393 (631)
T PHA02792        317 HTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNV---VVEDDDNIINIMPLFPTLSIHESDVLSIL  393 (631)
T ss_pred             CCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCc---hhhhcCCCCChhHHHHHHHhccHhHHHHH
Confidence                           000011245678889999999999999999999   88888775  69999988776554   57


Q ss_pred             HHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009          183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       183 ~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~  233 (434)
                      ++|+++|+ |+|.+|..|.||||+|+.    .+..+++++|.++|++....
T Consensus       394 klLIs~GA-DIN~kD~~G~TPLh~Aa~----~~n~eivelLLs~GADIN~k  439 (631)
T PHA02792        394 KLCKPYID-DINKIDKHGRSILYYCIE----SHSVSLVEWLIDNGADINIT  439 (631)
T ss_pred             HHHHhcCC-ccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCCCCc
Confidence            88899998 999999999999999998    66789999999999986543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=2.6e-25  Score=232.37  Aligned_cols=216  Identities=32%  Similarity=0.413  Sum_probs=181.4

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC-CHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG-YVGIVKA   80 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~iv~~   80 (434)
                      .|.++.++.+++.+..   .+..+..|.||||.|+.+++.++++.+++++++. +..+..|.||+|.|+..| ..++...
T Consensus       384 ~g~~~~v~Lll~~ga~---~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~  459 (1143)
T KOG4177|consen  384 SGRVSVVELLLEAGAD---PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARL  459 (1143)
T ss_pred             cCchhHHHhhhhccCC---cccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhh
Confidence            5778888888888855   3566777888888888888888888888888887 777888889999988888 7888888


Q ss_pred             HHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcc--------------------------------cccccC
Q 041009           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA--------------------------------ASARLI  128 (434)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~--------------------------------~~~~~~  128 (434)
                      +++.+.+. +..-..|.||||.|+..|+.+++..+++.++..                                .+.++.
T Consensus       460 l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~  538 (1143)
T KOG4177|consen  460 LLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTG  538 (1143)
T ss_pred             HhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcc
Confidence            88888777 777888888888888888888888888755221                                144556


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHH
Q 041009          129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILA  208 (434)
Q Consensus       129 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~  208 (434)
                      +|.||||.|+.+|+..+|++|+++|++   ++.+|+.|+||||.|+..|+.+|+++|+++|+ ++|..|.+|.|||++|.
T Consensus       539 r~~TpLh~A~~~g~v~~VkfLLe~gAd---v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA-~vna~d~~g~TpL~iA~  614 (1143)
T KOG4177|consen  539 RGYTPLHVAVHYGNVDLVKFLLEHGAD---VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGA-SVNAADLDGFTPLHIAV  614 (1143)
T ss_pred             cccchHHHHHhcCCchHHHHhhhCCcc---ccccCCCCCChhhHHHHcChHHHHHHHHHcCC-CCCcccccCcchhHHHH
Confidence            688999999999999999999999999   88999999999999999999999999999988 99999999999999998


Q ss_pred             HccCCCchhHHHHHHHHcCCCc
Q 041009          209 QSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       209 ~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                      .    .+..++++.+...++..
T Consensus       615 ~----lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  615 R----LGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             H----hcccchhhHHHhccCcc
Confidence            8    77788889888888875

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=4.5e-25  Score=230.60  Aligned_cols=195  Identities=26%  Similarity=0.296  Sum_probs=170.5

Q ss_pred             hHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhh
Q 041009            5 VNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV   84 (434)
Q Consensus         5 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~   84 (434)
                      .+....+++.+   .+.+.....|.||||.|+..||.++++.+++.++.. +...+.|.+++|.|...+...+++.++++
T Consensus       454 ~~~~~~l~~~g---~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~~~  529 (1143)
T KOG4177|consen  454 LQIARLLLQYG---ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILLEH  529 (1143)
T ss_pred             hhhhhhHhhcC---CCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHhhc
Confidence            34444455544   234666778889999999999999888888888665 56677888999999999999999999999


Q ss_pred             CCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCC
Q 041009           85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDD  164 (434)
Q Consensus        85 ~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~  164 (434)
                      +.+. +.++.+|+||||.|+.+|+.++|++|++++++. +.+++.|+||||.|+..|+.+++++|+++|++   +|..|.
T Consensus       530 ga~v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~---vna~d~  604 (1143)
T KOG4177|consen  530 GANV-DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS---VNAADL  604 (1143)
T ss_pred             CCce-ehhcccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcCCC---CCcccc
Confidence            8887 889999999999999999999999999999998 67779999999999999999999999999999   999999


Q ss_pred             CCCcHHHHHHHcCcHHHHHHhhhccccc-----ccccccCCCCHHHHHHH
Q 041009          165 YGMTILHLAVADKQIEAIKLLTTSTAIE-----VNAVTANGFTAWDILAQ  209 (434)
Q Consensus       165 ~g~t~LhlA~~~~~~~iv~~Ll~~~~~~-----~~~~n~~g~t~l~la~~  209 (434)
                      +|.||||+|+..|+.+++++++..++ +     ....+..|.+|.+++..
T Consensus       605 ~g~TpL~iA~~lg~~~~~k~l~~~~~-~~~~~~~~~e~~~g~~p~~v~e~  653 (1143)
T KOG4177|consen  605 DGFTPLHIAVRLGYLSVVKLLKVVTA-TPAATDPVKENRKGAVPEDVAEE  653 (1143)
T ss_pred             cCcchhHHHHHhcccchhhHHHhccC-ccccccchhhhhcccChhhHHHH
Confidence            99999999999999999999999887 5     77778899999998765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=2.8e-24  Score=228.26  Aligned_cols=215  Identities=17%  Similarity=0.171  Sum_probs=169.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHH-HHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC---CHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLH-VAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG---YVGI   77 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh-~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g---~~~i   77 (434)
                      +||++.++.++++.+. .+.+..|..|+|||| .|+..++.++++.|++.+.     .+..|.||||.|+..+   ..++
T Consensus        27 ~g~~~~v~~lL~~~~~-~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~l  100 (743)
T TIGR00870        27 RGDLASVYRDLEEPKK-LNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAI  100 (743)
T ss_pred             cCCHHHHHHHhccccc-cCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHH
Confidence            6999999999988432 455778899999999 8999999999999999887     5788999999998732   2334


Q ss_pred             HHHHHhhCCCC---------CccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccc-------------cCCCChHHH
Q 041009           78 VKALLQVIPDK---------CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASAR-------------LIWGETILH  135 (434)
Q Consensus        78 v~~Ll~~~~~~---------~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~-------------~~~g~t~Lh  135 (434)
                      ++.+.+.+.+.         ....+..|.||||+|+.+|+.++++.|+++|++.....             ...|+||||
T Consensus       101 l~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~  180 (743)
T TIGR00870       101 LLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLN  180 (743)
T ss_pred             HHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHH
Confidence            44444443221         11223579999999999999999999999998874211             135899999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcC---------cHHHHHHhhhcccc--cc----cccccCC
Q 041009          136 LCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADK---------QIEAIKLLTTSTAI--EV----NAVTANG  200 (434)
Q Consensus       136 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~---------~~~iv~~Ll~~~~~--~~----~~~n~~g  200 (434)
                      .|+..|+.+++++|+++|++   ++.+|..|+||||+|+..+         ...+.+++++.++.  +.    +..|++|
T Consensus       181 ~Aa~~~~~~iv~lLl~~gad---in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g  257 (743)
T TIGR00870       181 AAACLGSPSIVALLSEDPAD---ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQG  257 (743)
T ss_pred             HHHHhCCHHHHHHHhcCCcc---hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCC
Confidence            99999999999999999998   8999999999999999886         23455666655431  23    7789999


Q ss_pred             CCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          201 FTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       201 ~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      .||+|+|+.    .+..++.+.+.+.+..
T Consensus       258 ~TPL~~A~~----~g~~~l~~lLL~~~~~  282 (743)
T TIGR00870       258 LTPLKLAAK----EGRIVLFRLKLAIKYK  282 (743)
T ss_pred             CCchhhhhh----cCCccHHHHHHHHHHh
Confidence            999999998    6667888988875443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=8.5e-24  Score=213.23  Aligned_cols=199  Identities=15%  Similarity=0.084  Sum_probs=161.6

Q ss_pred             ccCCCCCCHHHHHHhcC---CHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC--CHHHHHHHHhhCCCC-CccCCCCC
Q 041009           23 TVNCLSETPLHVAALLG---HEDFAKEILRQKPRIAEELDSRKSSALHIASQKG--YVGIVKALLQVIPDK-CSDTDVDG   96 (434)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~-~~~~d~~g   96 (434)
                      .+|..|+||||+|+..|   +.++|+.|+++|+++ +.+|..|+||||+|+..+  +.|++++|++.|++. .+..|..+
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence            56788999999999997   599999999999998 788999999999999977  799999999996533 14467778


Q ss_pred             CCHHHHHHH--hCCHHHHHHHHH-hCCccccccc----CCCChHHHHHHHcCCHHHHHHHHHhcCCCc-c---ccCCCCC
Q 041009           97 RNPLHLAAM--RGHIDVLEELAR-AKPDAASARL----IWGETILHLCVKHNQLEALKFLLENMGDSE-L---LNAKDDY  165 (434)
Q Consensus        97 ~tpL~~Aa~--~g~~~~v~~Ll~-~~~~~~~~~~----~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-~---~~~~d~~  165 (434)
                      .+|||.++.  +++.+++++|+. .+.++....+    ..|.+|++++..+++.|++++|+++|++.. .   ....|..
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~  194 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD  194 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence            999999988  899999999996 4555533322    378999999999999999999999999831 0   0123334


Q ss_pred             C-CcHHHHHH------HcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHH
Q 041009          166 G-MTILHLAV------ADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR  225 (434)
Q Consensus       166 g-~t~LhlA~------~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~  225 (434)
                      + .|.||++.      .++..+++++|+++|+ |+|.+|.+|.||||++....  ..+.|++++|++
T Consensus       195 ~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Ga-dIN~kd~~G~TpLh~~~~~~--~~~~eiv~~Li~  258 (672)
T PHA02730        195 RCKNSLHYYILSHRESESLSKDVIKCLIDNNV-SIHGRDEGGSLPIQYYWSCS--TIDIEIVKLLIK  258 (672)
T ss_pred             ccchhHHHHHHhhhhhhccCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcC--cccHHHHHHHHh
Confidence            4 45666443      4578999999999998 99999999999999743311  344799999998

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=8.9e-23  Score=203.81  Aligned_cols=223  Identities=14%  Similarity=0.058  Sum_probs=177.5

Q ss_pred             CCChHHHHHHHhcCCCcc---------------------------------cccccCCCCCCHHHHHHhcC-------CH
Q 041009            2 AGSVNTLLELRQQDPLIV---------------------------------ERPTVNCLSETPLHVAALLG-------HE   41 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~---------------------------------~~~~~~~~g~t~Lh~Aa~~g-------~~   41 (434)
                      +|+.|+++.|++.+.+..                                 ..+..|..|.||||+|+..+       +.
T Consensus       116 ~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~  195 (631)
T PHA02792        116 NPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSL  195 (631)
T ss_pred             CCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCH
Confidence            589999999999886521                                 01234567999999999999       89


Q ss_pred             HHHHHHHhcCCchhhccCCCCCcHHHHHHHcC--CHHHHHHHHhhCCCCCcc------------C---------------
Q 041009           42 DFAKEILRQKPRIAEELDSRKSSALHIASQKG--YVGIVKALLQVIPDKCSD------------T---------------   92 (434)
Q Consensus        42 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~------------~---------------   92 (434)
                      |+++.|+++|+++ +..|..|.||||+|+.+.  +.|+++.|++..-+-+..            +               
T Consensus       196 ~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll  274 (631)
T PHA02792        196 DVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLL  274 (631)
T ss_pred             HHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHH
Confidence            9999999999998 778999999999999988  678888877632210000            0               


Q ss_pred             -------------------------------------------------------------CCCCCCHHHHHHHhCCHHH
Q 041009           93 -------------------------------------------------------------DVDGRNPLHLAAMRGHIDV  111 (434)
Q Consensus        93 -------------------------------------------------------------d~~g~tpL~~Aa~~g~~~~  111 (434)
                                                                                   ......+++.|+..|+.++
T Consensus       275 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eI  354 (631)
T PHA02792        275 SGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKV  354 (631)
T ss_pred             hCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHH
Confidence                                                                         0012556889999999999


Q ss_pred             HHHHHHhCCcccccccCC--CChHHHHHHHcCCH---HHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009          112 LEELARAKPDAASARLIW--GETILHLCVKHNQL---EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT  186 (434)
Q Consensus       112 v~~Ll~~~~~~~~~~~~~--g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll  186 (434)
                      +++|+++|++. ..+|.+  +.||||.|...+..   +++++++++|++   +|.+|..|.||||+|+..++.+++++|+
T Consensus       355 VelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD---IN~kD~~G~TPLh~Aa~~~n~eivelLL  430 (631)
T PHA02792        355 VEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD---INKIDKHGRSILYYCIESHSVSLVEWLI  430 (631)
T ss_pred             HHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc---cccccccCcchHHHHHHcCCHHHHHHHH
Confidence            99999999998 455655  46999998877664   357889999999   9999999999999999999999999999


Q ss_pred             hcccccccccccCCCCHHHHHHHccCC------CchhHHHHHHHHcCCCc
Q 041009          187 TSTAIEVNAVTANGFTAWDILAQSKRD------TKDWDIGELLRRAGAIS  230 (434)
Q Consensus       187 ~~~~~~~~~~n~~g~t~l~la~~~~~~------~~~~~i~~~L~~~g~~~  230 (434)
                      ++|+ +++.+|..|.||+++|......      ....++++++++.|...
T Consensus       431 s~GA-DIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        431 DNGA-DINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HCCC-CCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            9988 9999999999999998752211      12345678888777543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.3e-23  Score=177.64  Aligned_cols=207  Identities=24%  Similarity=0.251  Sum_probs=182.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+-+..+....-+++-.+  ..+++|.+++|.|+-+|+.+.+...+.++... ++.+..+++|+.+++..-+.+.+..+
T Consensus        72 s~nsd~~v~s~~~~~~~~~--~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~~~~  148 (296)
T KOG0502|consen   72 SGNSDVAVQSAQLDPDAID--ETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVVDLL  148 (296)
T ss_pred             cCCcHHHHHhhccCCCCCC--CCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHHHHH
Confidence            4666777777777766543  35677999999999999999999999999887 78899999999999999988888777


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      .+..   .+..|+.|.|||.||+..|+++++++|++.|+++ ....++.+++|.+|+..|..+++++|++++.+   +|.
T Consensus       149 ~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vd---VNv  221 (296)
T KOG0502|consen  149 VNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVD---VNV  221 (296)
T ss_pred             hhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC---cce
Confidence            6653   3678999999999999999999999999999998 66778899999999999999999999999999   999


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHH
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLR  224 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~  224 (434)
                      -|.+|-|||-+|++.++.+|++.|+..|+ |++.-+..|.+++++|..    .++. +++..+
T Consensus       222 yDwNGgTpLlyAvrgnhvkcve~Ll~sGA-d~t~e~dsGy~~mdlAVa----lGyr-~Vqqvi  278 (296)
T KOG0502|consen  222 YDWNGGTPLLYAVRGNHVKCVESLLNSGA-DVTQEDDSGYWIMDLAVA----LGYR-IVQQVI  278 (296)
T ss_pred             eccCCCceeeeeecCChHHHHHHHHhcCC-CcccccccCCcHHHHHHH----hhhH-HHHHHH
Confidence            99999999999999999999999999999 999999999999999988    4444 444433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=3.3e-22  Score=213.77  Aligned_cols=165  Identities=20%  Similarity=0.223  Sum_probs=149.8

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .||.+.++.|++.+.+   .+..|..|+||||+||..|+.++++.|+++|+++ +.+|.+|+||||+|+..|+.+++++|
T Consensus       535 ~g~~~~l~~Ll~~G~d---~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L  610 (823)
T PLN03192        535 TGNAALLEELLKAKLD---PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRIL  610 (823)
T ss_pred             cCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            5999999999999855   4678999999999999999999999999999987 88899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      ++.++..   .+..|.++||.|+..|+.++++.|+++++++ +.+|.+|+||||+|+..|+.+++++|+++|++   ++.
T Consensus       611 ~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd---v~~  683 (823)
T PLN03192        611 YHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRLLIMNGAD---VDK  683 (823)
T ss_pred             HhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC---CCC
Confidence            9876544   3456789999999999999999999999998 67799999999999999999999999999999   888


Q ss_pred             CCCCC-CcHHHHHHHcC
Q 041009          162 KDDYG-MTILHLAVADK  177 (434)
Q Consensus       162 ~d~~g-~t~LhlA~~~~  177 (434)
                      .|.+| .||++++....
T Consensus       684 ~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        684 ANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCCCCCCCHHHHHHHHH
Confidence            88888 99999886543

>PF13962 PGG: Domain of unknown function

Probab=99.89  E-value=1.5e-22  Score=162.07  Aligned_cols=94  Identities=37%  Similarity=0.586  Sum_probs=81.9

Q ss_pred             hHHHHhhhhHHHHHHHHHHHHhhhhcCCCCCc--c------------c-hhhHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 041009          273 DWLEKKRNAAMVVASVISTMGFQAAVDPPQSP--Q------------L-AASSFVVWNTIGFLASLSLILLLIIDLP---  334 (434)
Q Consensus       273 ~wlk~t~~s~~vva~Liat~~f~a~~~~pgg~--~------------~-~f~~f~~~~~~a~~~S~~~~~~~~~~~~---  334 (434)
                      ||+++++|++++||+||||+||||++|||||+  +            + .|.+|+++|++||++|++++++++++++   
T Consensus         2 ~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~~   81 (113)
T PF13962_consen    2 KWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDFR   81 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            59999999999999999999999999999996  1            2 8999999999999999999999886552   


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041009          335 INRILFAWILAWIMSLAIVAMAITYIVSIALI  366 (434)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  366 (434)
                      ..++..++....+|++++.+|++||++|+++|
T Consensus        82 ~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   82 RFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            22334567778899999999999999999875

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.2e-22  Score=193.22  Aligned_cols=199  Identities=27%  Similarity=0.307  Sum_probs=167.9

Q ss_pred             CCCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHH
Q 041009            1 MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (434)
Q Consensus         1 ~~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~   80 (434)
                      +.||.+.+..|+..+..   .+..|.+|.|+||.||...+.+||++|+++++++ +..|..||||||.|+..|+..++++
T Consensus        49 ~~~d~~ev~~ll~~ga~---~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~  124 (527)
T KOG0505|consen   49 SRGDLEEVRKLLNRGAS---PNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEY  124 (527)
T ss_pred             ccccHHHHHHHhccCCC---ccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHH
Confidence            36899999999998854   3777999999999999999999999999999998 8899999999999999999999999


Q ss_pred             HHhhCCCCCccCCCCCCCHHHHHH-------------HhCC-H------------HHHHHHHHhCCcccccccCCCChHH
Q 041009           81 LLQVIPDKCSDTDVDGRNPLHLAA-------------MRGH-I------------DVLEELARAKPDAASARLIWGETIL  134 (434)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpL~~Aa-------------~~g~-~------------~~v~~Ll~~~~~~~~~~~~~g~t~L  134 (434)
                      |++.+++. ...|.+|..|...+-             ..|. +            +=++..+..+... ...+..|-|.|
T Consensus       125 li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~-d~~~~rG~T~l  202 (527)
T KOG0505|consen  125 LIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAEL-DARHARGATAL  202 (527)
T ss_pred             HHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccc-cccccccchHH
Confidence            99999987 556666665543321             1111 1            1122222334443 44455599999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          135 HLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       135 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      |+|+.+|..++.++|++.|.+   ++.+|.+|+||||.|+..|+.+..++|+++++ +.+..+..|.||++++..
T Consensus       203 HvAaa~Gy~e~~~lLl~ag~~---~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga-~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  203 HVAAANGYTEVAALLLQAGYS---VNIKDYDGWTPLHAAAHWGQEDACELLVEHGA-DMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHhhhHHHHHHHHHHhccC---cccccccCCCcccHHHHhhhHhHHHHHHHhhc-ccchhhhcCCCCccchhh
Confidence            999999999999999999999   89999999999999999999999999999999 999999999999999876

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=4e-23  Score=174.75  Aligned_cols=190  Identities=23%  Similarity=0.205  Sum_probs=164.4

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL   82 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll   82 (434)
                      |+.+++..+|.++...   +.++--+.+|+.+++...|.+.+..+.++   .+|..|+.|.|||.+|+..|++++|++||
T Consensus       107 ~s~~k~sttltN~~rg---nevs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL  180 (296)
T KOG0502|consen  107 GSVDKVSTTLTNGARG---NEVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLL  180 (296)
T ss_pred             CCcceeeeeecccccC---CccccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHH
Confidence            4455555566555432   45667789999999999999988887774   34678999999999999999999999999


Q ss_pred             hhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCC
Q 041009           83 QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK  162 (434)
Q Consensus        83 ~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  162 (434)
                      +.|+++ +...+...++|..|++.|..+++++|+.++++. +.-|-+|-|||.+|++.|+.++++.|++.|++   ++..
T Consensus       181 ~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd---~t~e  255 (296)
T KOG0502|consen  181 NSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLNSGAD---VTQE  255 (296)
T ss_pred             HcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHhcCCC---cccc
Confidence            999998 788888999999999999999999999999998 67799999999999999999999999999999   8999


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHH
Q 041009          163 DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD  205 (434)
Q Consensus       163 d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~  205 (434)
                      |..|++++.+|+..|+. +|+..+++.. +.+.+|+.-.||+|
T Consensus       256 ~dsGy~~mdlAValGyr-~Vqqvie~h~-lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  256 DDSGYWIMDLAVALGYR-IVQQVIEKHA-LKLCQDSEKRTPLH  296 (296)
T ss_pred             cccCCcHHHHHHHhhhH-HHHHHHHHHH-HHHhhcccCCCCCC
Confidence            99999999999999988 7777777655 67777776666654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.8e-22  Score=182.86  Aligned_cols=180  Identities=26%  Similarity=0.326  Sum_probs=155.2

Q ss_pred             CCHHHHHHHHhc----CC----chhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh----
Q 041009           39 GHEDFAKEILRQ----KP----RIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR----  106 (434)
Q Consensus        39 g~~~~v~~Ll~~----~~----~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~----  106 (434)
                      -+.+.|+.-+..    .+    .++|..|.+|+|+||||+..+|+++|+.||+.+-...+.+|+-|+||+++|+..    
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~  316 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQ  316 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcc
Confidence            356666655432    22    235778999999999999999999999999998777799999999999999864    


Q ss_pred             -CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009          107 -GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL  185 (434)
Q Consensus       107 -g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L  185 (434)
                       .+.++|..|+..+. .+-.-...|.|+|++|+.+|+.++++.|+.+|+|   +|.+|.+|.|+|..|+.+|+.+++++|
T Consensus       317 ~~d~~vV~~LF~mgn-VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd---VNiQDdDGSTALMCA~EHGhkEivklL  392 (452)
T KOG0514|consen  317 PADRTVVERLFKMGD-VNAKASQHGQTALMLAVSHGRVDMVKALLACGAD---VNIQDDDGSTALMCAAEHGHKEIVKLL  392 (452)
T ss_pred             hhhHHHHHHHHhccC-cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC---CccccCCccHHHhhhhhhChHHHHHHH
Confidence             46789999998544 4344456699999999999999999999999999   999999999999999999999999999


Q ss_pred             hhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHc
Q 041009          186 TTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA  226 (434)
Q Consensus       186 l~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~  226 (434)
                      +..+.+|....|.+|.|+|.+|.+    .++.+|.-+|..+
T Consensus       393 LA~p~cd~sLtD~DgSTAl~IAle----agh~eIa~mlYa~  429 (452)
T KOG0514|consen  393 LAVPSCDISLTDVDGSTALSIALE----AGHREIAVMLYAH  429 (452)
T ss_pred             hccCcccceeecCCCchhhhhHHh----cCchHHHHHHHHH
Confidence            999999999999999999999998    7778888877653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=5.5e-22  Score=194.90  Aligned_cols=228  Identities=25%  Similarity=0.264  Sum_probs=182.1

Q ss_pred             CCCChHHHHHHHhcCC----------CcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHH
Q 041009            1 MAGSVNTLLELRQQDP----------LIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIAS   70 (434)
Q Consensus         1 ~~G~~~~v~~Ll~~~~----------~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa   70 (434)
                      +.||++.+..|++...          .-.+.+..|.+|.|+||.||.+|+.++++.|+++.+-+ +..|..|.+|||+|+
T Consensus        12 ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaa   90 (854)
T KOG0507|consen   12 KAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAA   90 (854)
T ss_pred             hcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehh
Confidence            3688899999887321          11223556778999999999999999999999988876 677899999999999


Q ss_pred             HcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHH
Q 041009           71 QKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLL  150 (434)
Q Consensus        71 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  150 (434)
                      ..|+.|+++.++..+... +..+..|.||||.|+..||.+++.+|+.++.++ ..+|..+.|+|.+|++.|..++++.|+
T Consensus        91 w~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll  168 (854)
T KOG0507|consen   91 WNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLL  168 (854)
T ss_pred             hcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHh
Confidence            999999999999988444 888889999999999999999999999999988 566788999999999999999999888


Q ss_pred             HhcCCCc---c--ccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHH
Q 041009          151 ENMGDSE---L--LNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR  225 (434)
Q Consensus       151 ~~~~~~~---~--~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~  225 (434)
                      +..-...   .  -..++..+-+|||+|+++|+.++++.|++.|- |+|...++| |+||.|+.    -+..+++.+|.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~-din~~t~~g-talheaal----cgk~evvr~ll~  242 (854)
T KOG0507|consen  169 QKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF-DINYTTEDG-TALHEAAL----CGKAEVVRFLLE  242 (854)
T ss_pred             hhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC-Ccccccccc-hhhhhHhh----cCcchhhhHHHh
Confidence            7621100   0  12345677889999999999999999998876 888887776 88888887    445678888888


Q ss_pred             cCCCccccCCCC
Q 041009          226 AGAISAQDLQLP  237 (434)
Q Consensus       226 ~g~~~~~~~~~~  237 (434)
                      .|.......+..
T Consensus       243 ~gin~h~~n~~~  254 (854)
T KOG0507|consen  243 IGINTHIKNQHG  254 (854)
T ss_pred             hccccccccccc
Confidence            888765544443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=2e-21  Score=176.13  Aligned_cols=163  Identities=20%  Similarity=0.210  Sum_probs=144.8

Q ss_pred             cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHc-----CCHHHHHHHHhhCCCCCccCCCCC
Q 041009           22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQK-----GYVGIVKALLQVIPDKCSDTDVDG   96 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~-----g~~~iv~~Ll~~~~~~~~~~d~~g   96 (434)
                      |-.|.+|+|+||+|+.++++++|+.||+.+...++.+|.-|+||.++|+-.     .+.++|+.|.+.|.-. -.....|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN-aKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN-AKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc-hhhhhhc
Confidence            445888999999999999999999999999988899999999999999843     4678999999886543 3445679


Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHc
Q 041009           97 RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD  176 (434)
Q Consensus        97 ~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~  176 (434)
                      .|+|++|+.+|+.++++.|+..+++. +.+|.+|.|+|++|+++|+.|++++|+....-.  +...|.+|.|+|.+|...
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd--~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD--ISLTDVDGSTALSIALEA  417 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCccc--ceeecCCCchhhhhHHhc
Confidence            99999999999999999999999998 778999999999999999999999999765322  778899999999999999


Q ss_pred             CcHHHHHHhhhc
Q 041009          177 KQIEAIKLLTTS  188 (434)
Q Consensus       177 ~~~~iv~~Ll~~  188 (434)
                      |+.+|..+|..+
T Consensus       418 gh~eIa~mlYa~  429 (452)
T KOG0514|consen  418 GHREIAVMLYAH  429 (452)
T ss_pred             CchHHHHHHHHH
Confidence            999999888765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=1.9e-21  Score=191.12  Aligned_cols=213  Identities=24%  Similarity=0.285  Sum_probs=181.8

Q ss_pred             CCCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHH
Q 041009            1 MAGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (434)
Q Consensus         1 ~~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~   80 (434)
                      |+|+.++++.|++.++.+ +.  .|..|.+|||+|+..|+.++++.++.++.. .+..+..|.||||.|++.||.+++.+
T Consensus        58 Lng~~~is~llle~ea~l-dl--~d~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~  133 (854)
T KOG0507|consen   58 LNGQNQISKLLLDYEALL-DL--CDTKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFY  133 (854)
T ss_pred             hcCchHHHHHHhcchhhh-hh--hhccCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHH
Confidence            689999999999987753 32  357799999999999999999999999944 48889999999999999999999999


Q ss_pred             HHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcc-------cccccCCCChHHHHHHHcCCHHHHHHHHHhc
Q 041009           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA-------ASARLIWGETILHLCVKHNQLEALKFLLENM  153 (434)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  153 (434)
                      |++++++. -++|+.+.|++..|++.|..++++.|+...-..       ...++..+.+|||.|+++|+.++++.|++.|
T Consensus       134 Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag  212 (854)
T KOG0507|consen  134 LLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAG  212 (854)
T ss_pred             HHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcC
Confidence            99999998 689999999999999999999999999862211       1234456789999999999999999999999


Q ss_pred             CCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHH
Q 041009          154 GDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLR  224 (434)
Q Consensus       154 ~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~  224 (434)
                      .+   +|.... .-|+||-|+..|..+++.+|++.|. +..++|.+|+|+|++...... ....++.-.+.
T Consensus       213 ~d---in~~t~-~gtalheaalcgk~evvr~ll~~gi-n~h~~n~~~qtaldil~d~~~-~~~~ei~ga~~  277 (854)
T KOG0507|consen  213 FD---INYTTE-DGTALHEAALCGKAEVVRFLLEIGI-NTHIKNQHGQTALDIIIDLQE-NRRYEIAGAVK  277 (854)
T ss_pred             CC---cccccc-cchhhhhHhhcCcchhhhHHHhhcc-ccccccccchHHHHHHHhcch-hhhhhhhhhhh
Confidence            98   776655 4599999999999999999999977 999999999999999877544 33444544443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=9.3e-21  Score=163.45  Aligned_cols=129  Identities=17%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             cCCCCCCHHHHHHhcCCH----HHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHH---HHHHHhhCCCCCccCC-CC
Q 041009           24 VNCLSETPLHVAALLGHE----DFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGI---VKALLQVIPDKCSDTD-VD   95 (434)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i---v~~Ll~~~~~~~~~~d-~~   95 (434)
                      .+.++.++||.||+.|+.    ++++.|++.++.+ +..|..|+||||+|+..|+.+.   +++|++.++++ +.+| ..
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~   93 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGT   93 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            344455555555555554    3333344444433 4445555555555555554332   45555555444 3344 24


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHH-hCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009           96 GRNPLHLAAMRGHIDVLEELAR-AKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD  155 (434)
Q Consensus        96 g~tpL~~Aa~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  155 (434)
                      |.||||+|+..|+.+++++|++ .+.+. ..++..|+||||+|+..++.+++++|+++|++
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAV  153 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5555555555555555555553 33333 33344455555555555555555555554444

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=9.4e-21  Score=154.71  Aligned_cols=141  Identities=30%  Similarity=0.350  Sum_probs=131.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHH
Q 041009           65 ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE  144 (434)
Q Consensus        65 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  144 (434)
                      -+-+|+..+..+.|+.||+..++..+.+|.+|+||||.|+.+||.++++.|+..+++. +.+...|+||||.|++.++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            3678999999999999999999999999999999999999999999999999999998 777888999999999999999


Q ss_pred             HHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcH-HHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQI-EAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       145 ~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~-~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      ++.+|+++|++   +|+......||||+|+..++. ..+++|+..+.+++...++.+.||+++|.+
T Consensus       145 va~~LLqhgaD---VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  145 VAGRLLQHGAD---VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             HHHHHHhccCc---ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence            99999999999   999999999999999987654 567888888888999999999999999987

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=162.39  Aligned_cols=141  Identities=19%  Similarity=0.204  Sum_probs=124.6

Q ss_pred             hccCCCCCcHHHHHHHcCCH----HHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHH---HHHHHHhCCccccccc-
Q 041009           56 EELDSRKSSALHIASQKGYV----GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDV---LEELARAKPDAASARL-  127 (434)
Q Consensus        56 ~~~d~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~---v~~Ll~~~~~~~~~~~-  127 (434)
                      +..+.++.++||.||+.|+.    +++++|.+.+... +.+|..|+||||+|+..|+.+.   +++|++++++. +.++ 
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~   91 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NAREL   91 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCC
Confidence            56678889999999999998    5666777777765 7789999999999999998654   89999999988 5555 


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHH-hcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCC
Q 041009          128 IWGETILHLCVKHNQLEALKFLLE-NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT  202 (434)
Q Consensus       128 ~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t  202 (434)
                      ..|.||||+|+.+|+.+++++|++ .|++   ++.+|.+|.||||+|+..++.+++++|+++++ +++.++..|..
T Consensus        92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga-~~~~~~~~~~~  163 (166)
T PHA02743         92 GTGNTLLHIAASTKNYELAEWLCRQLGVN---LGAINYQHETAYHIAYKMRDRRMMEILRANGA-VCDDPLSIGLS  163 (166)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhccCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcccCCcc
Confidence            589999999999999999999995 7888   88899999999999999999999999999988 99999888764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.85  E-value=6.5e-21  Score=202.59  Aligned_cols=193  Identities=21%  Similarity=0.151  Sum_probs=152.8

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhc--CCchhhccCCCCCcHHH-HHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQ--KPRIAEELDSRKSSALH-IASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~g~tpLh-~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A  103 (434)
                      .++.+++.||..|+.+.++.++++  +.+. +..|..|.|||| .|+.+++.++++.|++.+.     .+..|.||||.|
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            468999999999999999999998  5555 778999999999 8889999999999999876     577899999999


Q ss_pred             HHhC---CHHHHHHHHHhCCcc---------cccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC--------
Q 041009          104 AMRG---HIDVLEELARAKPDA---------ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD--------  163 (434)
Q Consensus       104 a~~g---~~~~v~~Ll~~~~~~---------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d--------  163 (434)
                      +..+   ..++++.+....++.         ....+..|.||||+|+.+|+.+++++|+++|++   ++.++        
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd---v~~~~~~~~~~~~  166 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS---VPARACGDFFVKS  166 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC---CCcCcCCchhhcC
Confidence            9732   223344444433321         111234699999999999999999999999998   55432        


Q ss_pred             ------CCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCC-----chhHHHHHHHHcCCC
Q 041009          164 ------DYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDT-----KDWDIGELLRRAGAI  229 (434)
Q Consensus       164 ------~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~-----~~~~i~~~L~~~g~~  229 (434)
                            ..|.||||+|+..++.+++++|+++|+ |++..|+.|+||+|+|+......     ....+.+.+...++.
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga-din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPA-DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK  242 (743)
T ss_pred             CCCCcccccccHHHHHHHhCCHHHHHHHhcCCc-chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence                  368999999999999999999999998 99999999999999998843211     122355666665554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=3.6e-20  Score=160.45  Aligned_cols=130  Identities=21%  Similarity=0.296  Sum_probs=86.0

Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhh------CCCCCccCCCCCCCHHHHHHHhCC----HHHHHHHHHhCCccccc
Q 041009           56 EELDSRKSSALHIASQKGYVGIVKALLQV------IPDKCSDTDVDGRNPLHLAAMRGH----IDVLEELARAKPDAASA  125 (434)
Q Consensus        56 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~------~~~~~~~~d~~g~tpL~~Aa~~g~----~~~v~~Ll~~~~~~~~~  125 (434)
                      +.+|..|.||||+|+..|+.++++.|+..      +++. +.+|..|.||||+|+..|+    .++++.|++.+++. +.
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~   92 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NA   92 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CC
Confidence            34566677777777777777777766432      2332 5566677777777777776    46667777766665 33


Q ss_pred             cc-CCCChHHHHHHHcCCHHHHHHHHH-hcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          126 RL-IWGETILHLCVKHNQLEALKFLLE-NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       126 ~~-~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      ++ .+|+||||+|+.+++.+++++|++ .+.+   ++.+|.+|.||||+|+..++.+++++|++.++
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~---~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGID---LHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            34 367777777777777777777775 3565   66667777777777777777777777776554

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=8.4e-20  Score=158.16  Aligned_cols=129  Identities=22%  Similarity=0.245  Sum_probs=114.1

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhc------CCchhhccCCCCCcHHHHHHHcCC----HHHHHHHHhhCCCCCccCC
Q 041009           24 VNCLSETPLHVAALLGHEDFAKEILRQ------KPRIAEELDSRKSSALHIASQKGY----VGIVKALLQVIPDKCSDTD   93 (434)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~------~~~~~~~~d~~g~tpLh~Aa~~g~----~~iv~~Ll~~~~~~~~~~d   93 (434)
                      .|..|+||||+|+..|+.++++.|+..      +.+ ++.+|..|+||||+|+..|+    .+++++|++.+++. +.+|
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~   94 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQE   94 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCC
Confidence            467799999999999999999998653      344 48889999999999999999    58999999999987 6777


Q ss_pred             C-CCCCHHHHHHHhCCHHHHHHHHHh-CCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009           94 V-DGRNPLHLAAMRGHIDVLEELARA-KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD  155 (434)
Q Consensus        94 ~-~g~tpL~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  155 (434)
                      . +|.||||+|+..|+.+++++|++. +.+. ...|.+|+||||.|+..++.+++++|++.++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4 899999999999999999999984 6665 67788999999999999999999999987654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.6e-19  Score=167.79  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=115.9

Q ss_pred             CCCCC-CHHHHHHhcCCHHHHHHHHhcCCchhhcc----CCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccC-CCCCCC
Q 041009           25 NCLSE-TPLHVAALLGHEDFAKEILRQKPRIAEEL----DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT-DVDGRN   98 (434)
Q Consensus        25 ~~~g~-t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-d~~g~t   98 (434)
                      |..|. ++||.|+..|+.++++.|+++|+++ +.+    |..|.||||+|+..|+.+++++|+++|+++ +.. +..|.|
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~T  106 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKIT  106 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCC
Confidence            44444 5677777778888888888888876 444    457888888888888888888888888887 554 457888


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCc
Q 041009           99 PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQ  178 (434)
Q Consensus        99 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~  178 (434)
                      |||.|+..|+.++++.|+++++++ +.+|..|.||||+|++.++.+++..+..        +..+..+.+|++++   ++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---~n  174 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICD--------NEISNFYKHPKKIL---IN  174 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcC--------CcccccccChhhhh---cc
Confidence            888888888888888888888887 5667788888888888888777655542        12456677788765   36


Q ss_pred             HHHHHHhhhccc
Q 041009          179 IEAIKLLTTSTA  190 (434)
Q Consensus       179 ~~iv~~Ll~~~~  190 (434)
                      .+++++|+++..
T Consensus       175 ~ei~~~Lish~v  186 (300)
T PHA02884        175 FDILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHHHH
Confidence            788888887654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.5e-19  Score=168.01  Aligned_cols=157  Identities=20%  Similarity=0.145  Sum_probs=132.4

Q ss_pred             hccCCCCCcH-HHHHHHcCCHHHHHHHHhhCCCCCccC----CCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCC
Q 041009           56 EELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDT----DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG  130 (434)
Q Consensus        56 ~~~d~~g~tp-Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~----d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  130 (434)
                      ..+|..|+|+ ||.|+..|+.+++++|+++|+++ +.+    |..|.||||+|+..|+.+++++|+++|+++....+..|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            4567778765 56667779999999999999987 555    46899999999999999999999999999854345679


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHc
Q 041009          131 ETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQS  210 (434)
Q Consensus       131 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~  210 (434)
                      .||||.|+.+|+.+++++|++.|++   ++.+|..|.||||+|+..++.+++..+...     + .+..+.+|.+++.  
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAd---in~kd~~G~TpL~~A~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~--  173 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGAD---INIQTNDMVTPIELALMICNNFLAFMICDN-----E-ISNFYKHPKKILI--  173 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHhCChhHHHHhcCC-----c-ccccccChhhhhc--
Confidence            9999999999999999999999999   899999999999999999988887666532     2 4677788888652  


Q ss_pred             cCCCchhHHHHHHHHcCCC
Q 041009          211 KRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       211 ~~~~~~~~i~~~L~~~g~~  229 (434)
                           ..++.++|..++..
T Consensus       174 -----n~ei~~~Lish~vl  187 (300)
T PHA02884        174 -----NFDILKILVSHFIL  187 (300)
T ss_pred             -----cHHHHHHHHHHHHH
Confidence                 36788999988774

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.82  E-value=3.3e-17  Score=163.54  Aligned_cols=164  Identities=28%  Similarity=0.339  Sum_probs=103.4

Q ss_pred             cccCCCCCCHHHHHHhc---CCHHHHHHHHhcCCchhhcc----CCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccC--
Q 041009           22 PTVNCLSETPLHVAALL---GHEDFAKEILRQKPRIAEEL----DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT--   92 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~--   92 (434)
                      +.+..-|+|.||.|..+   ++.++++.|++..|.+++..    .-.|.||||.|+.+.+.++|++|++.|+|+ +.+  
T Consensus       137 ~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~  215 (782)
T KOG3676|consen  137 NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARAC  215 (782)
T ss_pred             ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhh
Confidence            44566799999999874   56789999999888765443    457999999999999999999999999886 221  


Q ss_pred             -------C--------------CCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHH
Q 041009           93 -------D--------------VDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE  151 (434)
Q Consensus        93 -------d--------------~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  151 (434)
                             |              ..|..||-.||..++.|++++|+++++|+ +.+|.+|+|+||..+.+-..++.+++++
T Consensus       216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~  294 (782)
T KOG3676|consen  216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALE  294 (782)
T ss_pred             ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHh
Confidence                   1              12345555555555555555555555554 4445555555555555545555555555


Q ss_pred             hcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhc
Q 041009          152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS  188 (434)
Q Consensus       152 ~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~  188 (434)
                      +|++ .+...++.+|-|||-+|++.|..++.+.+++.
T Consensus       295 ~ga~-~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  295 LGAN-ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCC-ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            5544 23344445555555555555555555555544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=9.8e-20  Score=155.43  Aligned_cols=129  Identities=16%  Similarity=0.139  Sum_probs=61.6

Q ss_pred             ccCCCCCCHHHHHHhcCCHHHHHHHHhcC------CchhhccCCCCCcHHHHHHHcCCH---HHHHHHHhhCCCCCccCC
Q 041009           23 TVNCLSETPLHVAALLGHEDFAKEILRQK------PRIAEELDSRKSSALHIASQKGYV---GIVKALLQVIPDKCSDTD   93 (434)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~------~~~~~~~d~~g~tpLh~Aa~~g~~---~iv~~Ll~~~~~~~~~~d   93 (434)
                      ..|.+|.||||+||..|+.  ++.+...+      +......|..|.||||+|+..|+.   +++++|++.+++. +.+|
T Consensus        12 ~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~   88 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKE   88 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccC
Confidence            3455566666666666552  12111111      112233455555555555555543   2345555555544 3343


Q ss_pred             -CCCCCHHHHHHHhCCHHHHHHHHHh-CCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009           94 -VDGRNPLHLAAMRGHIDVLEELARA-KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD  155 (434)
Q Consensus        94 -~~g~tpL~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  155 (434)
                       .+|.||||+|+..|+.+++++|+.. +.+. +.+|..|+||||+|+..|+.+++++|++.|++
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             2455555555555555555555542 3333 34444455555555555555555555554443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.6e-19  Score=154.15  Aligned_cols=134  Identities=19%  Similarity=0.219  Sum_probs=111.3

Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCC--C----CCccCCCCCCCHHHHHHHhCCH---HHHHHHHHhCCcccc
Q 041009           54 IAEELDSRKSSALHIASQKGYVGIVKALLQVIP--D----KCSDTDVDGRNPLHLAAMRGHI---DVLEELARAKPDAAS  124 (434)
Q Consensus        54 ~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~--~----~~~~~d~~g~tpL~~Aa~~g~~---~~v~~Ll~~~~~~~~  124 (434)
                      ..+..|..|.||||+|+..|+.  ++++...+.  +    .....|.+|.||||+|+..|+.   ++++.|++.+.+. +
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n   85 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-N   85 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-c
Confidence            3467799999999999999984  333332221  1    2245689999999999999987   4688999999987 4


Q ss_pred             ccc-CCCChHHHHHHHcCCHHHHHHHHHh-cCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccccc
Q 041009          125 ARL-IWGETILHLCVKHNQLEALKFLLEN-MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVN  194 (434)
Q Consensus       125 ~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~  194 (434)
                      .++ ..|+||||+|+..|+.+++++|++. |.+   ++.+|..|.||||+|+..|+.+++++|+++|+ +.+
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d---~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga-~~~  153 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVN---MEILNYAFKTPYYVACERHDAKMMNILRAKGA-QCK  153 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---CccccCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCC
Confidence            555 5899999999999999999999974 788   88999999999999999999999999999887 543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=1.3e-19  Score=172.51  Aligned_cols=193  Identities=24%  Similarity=0.246  Sum_probs=161.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHH
Q 041009           31 PLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHID  110 (434)
Q Consensus        31 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~  110 (434)
                      .+.-||..|+.+-++.|+..++.+ +..+.+|.|+||-+|...+.+||++|++.++++ +..|..|+||+|.|+..||..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHH
Confidence            466688889999999999999887 888999999999999999999999999999998 899999999999999999999


Q ss_pred             HHHHHHHhCCcccccccCCCChHHHHHHH-------------cC--------C-----HHHHHHHHHhcCCCccccCCCC
Q 041009          111 VLEELARAKPDAASARLIWGETILHLCVK-------------HN--------Q-----LEALKFLLENMGDSELLNAKDD  164 (434)
Q Consensus       111 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~-------------~g--------~-----~~~v~~Ll~~~~~~~~~~~~d~  164 (434)
                      ++++|+.++++. ...+..|..|+..+..             .|        .     ..-+...+..|..   ....+.
T Consensus       121 i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~---~d~~~~  196 (527)
T KOG0505|consen  121 IVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE---LDARHA  196 (527)
T ss_pred             HHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc---cccccc
Confidence            999999999887 4445555555544221             11        0     1122334445666   566666


Q ss_pred             CCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccccC
Q 041009          165 YGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDL  234 (434)
Q Consensus       165 ~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~~  234 (434)
                      .|.|.||+|+.+|+.++.++|+++|. +++++|.+|.||||.|+.    .+.++..++|.++|++.....
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~-~~~~~D~dgWtPlHAAA~----Wg~~~~~elL~~~ga~~d~~t  261 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGY-SVNIKDYDGWTPLHAAAH----WGQEDACELLVEHGADMDAKT  261 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhcc-CcccccccCCCcccHHHH----hhhHhHHHHHHHhhcccchhh
Confidence            79999999999999999999999988 999999999999999999    777889999999999865543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.78  E-value=4.2e-19  Score=179.74  Aligned_cols=219  Identities=25%  Similarity=0.287  Sum_probs=199.2

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+-|+++.|+.++.++   ..+|+.|.+||.+|+-.||..+|+.|+++.+++-...|..+.|+|.+||..|..++|++|
T Consensus       767 ggh~e~vellv~rgani---ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelL  843 (2131)
T KOG4369|consen  767 GGHREEVELLVVRGANI---EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELL  843 (2131)
T ss_pred             CccHHHHHHHHHhcccc---cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHH
Confidence            58899999999999775   556899999999999999999999999999999888899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHhcCCCcccc
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARL-IWGETILHLCVKHNQLEALKFLLENMGDSELLN  160 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  160 (434)
                      |..+++. ..++...+|||.+|..-|.+++++.|+..|.++..... +.|-.||.+|..+|+.+..+.|++.|.+   +|
T Consensus       844 l~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsd---iN  919 (2131)
T KOG4369|consen  844 LNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSD---IN  919 (2131)
T ss_pred             HHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccch---hc
Confidence            9999887 67888999999999999999999999999988754433 5689999999999999999999999998   77


Q ss_pred             CC-CCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          161 AK-DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       161 ~~-d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      .. ..+-||+|-+|+-.|..+++.+|+...+ ++..+-..|.|||.-++.    .++.++-++|+.+|++...
T Consensus       920 aqIeTNrnTaltla~fqgr~evv~lLLa~~a-nvehRaktgltplme~As----gGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  920 AQIETNRNTALTLALFQGRPEVVFLLLAAQA-NVEHRAKTGLTPLMEMAS----GGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             cccccccccceeeccccCcchHHHHHHHHhh-hhhhhcccCCcccchhhc----CCccccchhhhhccccccc
Confidence            64 4577999999999999999999999888 899999999999999888    7788999999999999654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=4.3e-18  Score=139.25  Aligned_cols=143  Identities=24%  Similarity=0.233  Sum_probs=124.5

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH
Q 041009           30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (434)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  109 (434)
                      -.+-+|+..+....|+.||+..++.++.+|.+|+||||-|+.+|+.+|++.|+..+++. ..+...|+||||-||+-.+.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccch
Confidence            34778999999999999999999999999999999999999999999999999999998 88899999999999999999


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHHHHHHcCCHH-HHHHHHH-hcCCCccccCCCCCCCcHHHHHHHcC
Q 041009          110 DVLEELARAKPDAASARLIWGETILHLCVKHNQLE-ALKFLLE-NMGDSELLNAKDDYGMTILHLAVADK  177 (434)
Q Consensus       110 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~-~v~~Ll~-~~~~~~~~~~~d~~g~t~LhlA~~~~  177 (434)
                      +++..|++++++. +.......||||+|+..++.. .+++|+. .+..   ...++..+.||+.+|-+.+
T Consensus       144 ~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~---pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  144 EVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH---PGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccC---hhhhcCccchHHHHHHHhh
Confidence            9999999999998 666777899999999988754 4555554 3333   3445678899999997654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=6.3e-19  Score=155.21  Aligned_cols=152  Identities=25%  Similarity=0.276  Sum_probs=116.8

Q ss_pred             HHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHH
Q 041009           70 SQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL  149 (434)
Q Consensus        70 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  149 (434)
                      |+.|+.--|++-|+......+.-|..|.+|||+|++.||..+++.|+.+|+.. +..+....||||+|+.+|+.++++.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHH
Confidence            34444444444455444444778888888888888888888888888888877 55566678899999999999999999


Q ss_pred             HHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       150 l~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      ++..+|   +|+.++.|+|||||||.-|+..+.+-|+..|+ .+++-|++|.||++.|..    .-...+.+.-.+.|..
T Consensus        87 l~~kad---vnavnehgntplhyacfwgydqiaedli~~ga-~v~icnk~g~tpldkakp----~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen   87 LSRKAD---VNAVNEHGNTPLHYACFWGYDQIAEDLISCGA-AVNICNKKGMTPLDKAKP----MLKNTLLEIAEKHGQS  158 (448)
T ss_pred             HHHhcc---cchhhccCCCchhhhhhhcHHHHHHHHHhccc-eeeecccCCCCchhhhch----HHHHHHHHHHHHhCCC
Confidence            988888   89999999999999999999999999999888 889999999999997754    2223344444555554


Q ss_pred             c
Q 041009          230 S  230 (434)
Q Consensus       230 ~  230 (434)
                      .
T Consensus       159 ~  159 (448)
T KOG0195|consen  159 P  159 (448)
T ss_pred             C
Confidence            3

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=8.3e-18  Score=148.19  Aligned_cols=132  Identities=29%  Similarity=0.280  Sum_probs=84.2

Q ss_pred             hcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHH
Q 041009           37 LLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELA  116 (434)
Q Consensus        37 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll  116 (434)
                      +.|+.--|+..++......+.-|..|.+|||+||+.|+..+++.|+.+|+.+ +..+....||||+|+..||.+++..|+
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHH
Confidence            3344444444444444444666666667777777767766777776666665 555555666777777777777776666


Q ss_pred             HhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHH
Q 041009          117 RAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA  173 (434)
Q Consensus       117 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA  173 (434)
                      ++.++. +..+..|+||||+||..|...+.+-|+..|+.   ++..+++|.|||..|
T Consensus        88 ~~kadv-navnehgntplhyacfwgydqiaedli~~ga~---v~icnk~g~tpldka  140 (448)
T KOG0195|consen   88 SRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAA---VNICNKKGMTPLDKA  140 (448)
T ss_pred             HHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccce---eeecccCCCCchhhh
Confidence            666665 55566667777777776666666666666666   666666677776655

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=6.3e-16  Score=126.15  Aligned_cols=122  Identities=39%  Similarity=0.537  Sum_probs=64.8

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  104 (434)
                      |.+|.||||.|+..|+.++++.|++.+++. +..|..|.||||+|+..++.+++++|++.+... +..+..|.||+|.|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHH
Confidence            344556666666666666666666555544 444555555666655555555555555555433 344455555555555


Q ss_pred             HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHH
Q 041009          105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL  149 (434)
Q Consensus       105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  149 (434)
                      ..++.+++++|++++.+. ...+..|.||++.|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            555555555555544333 22334444555555555444444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=6.4e-16  Score=126.12  Aligned_cols=125  Identities=39%  Similarity=0.585  Sum_probs=114.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHH
Q 041009           57 ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHL  136 (434)
Q Consensus        57 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  136 (434)
                      ..|.+|.||||+|+..|+.+++++|++.+.+. ...+..|.+|+|.|+..++.++++.|++.++.. ...+..|.||+|.
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHH
Confidence            35678999999999999999999999999886 678899999999999999999999999998765 5557889999999


Q ss_pred             HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009          137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT  186 (434)
Q Consensus       137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll  186 (434)
                      |++.++.+++++|++.+.+   .+..|..|.||+|+|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999877   7888999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.67  E-value=4.8e-17  Score=165.06  Aligned_cols=220  Identities=20%  Similarity=0.215  Sum_probs=154.7

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .||..+|+.|++.+.++-  ...|..++|+|-+||..|..++|+.||..+++. .-++-...|||.+|...|+.++++.|
T Consensus       800 agh~tvV~~llk~ha~ve--aQsdrtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~l  876 (2131)
T KOG4369|consen  800 AGHITVVQDLLKAHADVE--AQSDRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHAL  876 (2131)
T ss_pred             cCchHHHHHHHhhhhhhh--hhcccccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHH
Confidence            478889999998887642  345778999999999999999999999999887 66788888999999999999999999


Q ss_pred             HhhCCCCCcc-CCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCcccc
Q 041009           82 LQVIPDKCSD-TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLN  160 (434)
Q Consensus        82 l~~~~~~~~~-~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  160 (434)
                      +..|.++... -.+.|..||..|+.+||.+..+.|++.+.++.....-+.+|+|-+|+-.|+.|++.+|+...++   +.
T Consensus       877 lS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an---ve  953 (2131)
T KOG4369|consen  877 LSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN---VE  953 (2131)
T ss_pred             hhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh---hh
Confidence            9998877433 2356889999999999988888888887776544444455556666555555555555555444   44


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHhhhccc----------------------------------ccccccccCCCCHHHH
Q 041009          161 AKDDYGMTILHLAVADKQIEAIKLLTTSTA----------------------------------IEVNAVTANGFTAWDI  206 (434)
Q Consensus       161 ~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~----------------------------------~~~~~~n~~g~t~l~l  206 (434)
                      .+-+.|-|||.-++..|..++-++|+..|+                                  ..++.+|++|+|+|-+
T Consensus       954 hRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwl 1033 (2131)
T KOG4369|consen  954 HRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWL 1033 (2131)
T ss_pred             hhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccch
Confidence            444444444444444444444444443332                                  1455667788888887


Q ss_pred             HHHccCCCchhHHHHHHHHcCCCcc
Q 041009          207 LAQSKRDTKDWDIGELLRRAGAISA  231 (434)
Q Consensus       207 a~~~~~~~~~~~i~~~L~~~g~~~~  231 (434)
                      |+.    .+....+.+|.+.+++..
T Consensus      1034 a~~----Gg~lss~~il~~~~ad~d 1054 (2131)
T KOG4369|consen 1034 ASA----GGALSSCPILVSSVADAD 1054 (2131)
T ss_pred             hcc----CCccccchHHhhcccChh
Confidence            776    455566677777666643

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=5e-16  Score=119.46  Aligned_cols=89  Identities=38%  Similarity=0.573  Sum_probs=50.1

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcH
Q 041009          100 LHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQI  179 (434)
Q Consensus       100 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~  179 (434)
                      ||+|++.|+.++++.|++.+++...     |+||||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|+.+|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGAD---INSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTC---TT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhccc---ccccCCCCCCHHHHHHHcCCH
Confidence            4556666666666666655444311     55566666666666666666666655   555556666666666666666


Q ss_pred             HHHHHhhhcccccccccc
Q 041009          180 EAIKLLTTSTAIEVNAVT  197 (434)
Q Consensus       180 ~iv~~Ll~~~~~~~~~~n  197 (434)
                      +++++|+++|. +++.+|
T Consensus        73 ~~~~~Ll~~g~-~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEHGA-DVNIRN   89 (89)
T ss_dssp             HHHHHHHHTTT--TTSS-
T ss_pred             HHHHHHHHcCC-CCCCcC
Confidence            66666665544 555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=9e-16  Score=118.02  Aligned_cols=85  Identities=33%  Similarity=0.474  Sum_probs=56.1

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHH
Q 041009           32 LHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDV  111 (434)
Q Consensus        32 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~  111 (434)
                      ||+||..|+.++++.|++.+.+. +.    |+||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHH
Confidence            56777777777777777766554 11    666777777777777777777766665 5666667777777777777777


Q ss_pred             HHHHHHhCCcc
Q 041009          112 LEELARAKPDA  122 (434)
Q Consensus       112 v~~Ll~~~~~~  122 (434)
                      +++|+++++++
T Consensus        75 ~~~Ll~~g~~~   85 (89)
T PF12796_consen   75 VKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHTTT-T
T ss_pred             HHHHHHcCCCC
Confidence            77777666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.57  E-value=3e-14  Score=142.65  Aligned_cols=149  Identities=19%  Similarity=0.205  Sum_probs=129.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCC--CCCCHHHHHHhcCCHHHHHHHHhcCCchhhcc---------CC----------
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNC--LSETPLHVAALLGHEDFAKEILRQKPRIAEEL---------DS----------   60 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~--~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~---------d~----------   60 (434)
                      +|+-++++.|++-.|..++-...+.  .|+||||+|+.+.+.++|+.|++.|+|+ +.+         |.          
T Consensus       156 ~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~  234 (782)
T KOG3676|consen  156 DGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYT  234 (782)
T ss_pred             hhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCc
Confidence            3556888899998887665444433  5999999999999999999999999986 221         11          


Q ss_pred             ----CCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCc-ccccccCCCChHHH
Q 041009           61 ----RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD-AASARLIWGETILH  135 (434)
Q Consensus        61 ----~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~Lh  135 (434)
                          .|..||.+||..++.|++++|+++++|+ +.+|.+|.|.||..+..-..++...+++++++ ....+|..|-|||.
T Consensus       235 G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLt  313 (782)
T KOG3676|consen  235 GYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLT  313 (782)
T ss_pred             ceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHH
Confidence                3678999999999999999999999998 99999999999999999999999999999988 22677889999999


Q ss_pred             HHHHcCCHHHHHHHHHh
Q 041009          136 LCVKHNQLEALKFLLEN  152 (434)
Q Consensus       136 ~A~~~g~~~~v~~Ll~~  152 (434)
                      +|++-|+.++++.+++.
T Consensus       314 LAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  314 LAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHhhhHHHHHHHHHh
Confidence            99999999999999998

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.55  E-value=3.3e-14  Score=104.23  Aligned_cols=104  Identities=24%  Similarity=0.318  Sum_probs=93.1

Q ss_pred             CHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcC
Q 041009           98 NPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADK  177 (434)
Q Consensus        98 tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~  177 (434)
                      --+.|+.++|.++-++..+..+-+....  ..|++|||+|+..|+.+++++|+..|++   ++.+|+.|-|||--|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHHHHh
Confidence            3467899999999999999888666433  3799999999999999999999999999   9999999999999999999


Q ss_pred             cHHHHHHhhhcccccccccccCCCCHHHHH
Q 041009          178 QIEAIKLLTTSTAIEVNAVTANGFTAWDIL  207 (434)
Q Consensus       178 ~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la  207 (434)
                      +.++|++|++.|+ |.....-+|.+.++.+
T Consensus        79 H~~cVklLL~~GA-drt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   79 HRDCVKLLLQNGA-DRTIHAPDGTALIEAT  107 (117)
T ss_pred             hHHHHHHHHHcCc-ccceeCCCchhHHhhc
Confidence            9999999999999 8888888998888754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=2.6e-13  Score=122.76  Aligned_cols=130  Identities=36%  Similarity=0.456  Sum_probs=107.9

Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCC-----HHHHHHHHHhCC--cccccccC
Q 041009           56 EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH-----IDVLEELARAKP--DAASARLI  128 (434)
Q Consensus        56 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~-----~~~v~~Ll~~~~--~~~~~~~~  128 (434)
                      ...+..+.+++|.++..+..+++++++..+.+. +.+|.+|.||+|+|+..|+     .++++.|++.++  +.....|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            455677888888888888888888888888888 7888888888888888888     888888888888  56677788


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcc
Q 041009          129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST  189 (434)
Q Consensus       129 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~  189 (434)
                      .|.||||+|+..|+.++++.+++.|++   .+.++..|.|++|.|+..++.++++.+.+.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCC---CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            888888888888888888888888887   6777888888888888888888888887754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=1.4e-13  Score=124.52  Aligned_cols=130  Identities=31%  Similarity=0.456  Sum_probs=120.9

Q ss_pred             cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCC-----HHHHHHHHhhCC--CCCccCCC
Q 041009           22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGY-----VGIVKALLQVIP--DKCSDTDV   94 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~-----~~iv~~Ll~~~~--~~~~~~d~   94 (434)
                      ...+..+.+++|.++..+..+.++.++..+.+. +..|..|.||||+|+..|+     .+++++|++.++  +....+|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            344566899999999999999999999999999 9999999999999999999     999999999999  66678899


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhc
Q 041009           95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENM  153 (434)
Q Consensus        95 ~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  153 (434)
                      .|.||||+|+..|+.++++.|++.++++ ...+..|.|+++.|+..++.++++.+.+.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999988 566889999999999999999999999865

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.51  E-value=1.2e-13  Score=101.35  Aligned_cols=102  Identities=22%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH
Q 041009           30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (434)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  109 (434)
                      --..+++++|..|-|+..+..+-++....  .|++|||+|+-.|+.+++++|+..|+++ +.+|+.|.|||..|+..||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~--ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY--GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh--CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhH
Confidence            44577888888888888888886653332  7888888888888888888888888887 77888888888888888888


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHH
Q 041009          110 DVLEELARAKPDAASARLIWGETILH  135 (434)
Q Consensus       110 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh  135 (434)
                      +++++|++++++- ..+..+|.+.+.
T Consensus        81 ~cVklLL~~GAdr-t~~~PdG~~~~e  105 (117)
T KOG4214|consen   81 DCVKLLLQNGADR-TIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHcCccc-ceeCCCchhHHh
Confidence            8888888888775 455555655443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=1.1e-12  Score=90.34  Aligned_cols=54  Identities=37%  Similarity=0.516  Sum_probs=33.3

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL   82 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll   82 (434)
                      |.||||+||..|+.+++++|++++.++ +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567777777777777777777776665 555777777777777777777777664

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.8e-12  Score=123.28  Aligned_cols=118  Identities=25%  Similarity=0.284  Sum_probs=101.4

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHH
Q 041009           32 LHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDV  111 (434)
Q Consensus        32 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~  111 (434)
                      |.-|+..|.+|+|+.++..-.|. ...|.+|.|+||-|+..||.+||+||++.|.++ +..|.+||||||+|+.++++.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHH
Confidence            44588889999999999987776 778999999999999999999999999999998 8999999999999999999999


Q ss_pred             HHHHHHhCCcccccccCCCChHHHHHH--HcCCHHHHHHHHH
Q 041009          112 LEELARAKPDAASARLIWGETILHLCV--KHNQLEALKFLLE  151 (434)
Q Consensus       112 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~  151 (434)
                      ++.|++.|+.+....-.++.|+..-+-  +.|...|.+||..
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999887666677888776653  4566777777764

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.36  E-value=4e-12  Score=112.54  Aligned_cols=121  Identities=22%  Similarity=0.206  Sum_probs=79.0

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCC
Q 041009           29 ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH  108 (434)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~  108 (434)
                      +.||.-++..|+.+....||+..... +.+|..|.|||..|+..|+.++++.|++.|+|+...++..++||||.|+..|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            46666666666666666666654333 56666666666666666666666666666666666666666667766666666


Q ss_pred             HHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHH
Q 041009          109 IDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE  151 (434)
Q Consensus       109 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  151 (434)
                      .++.+.|++.|+.. ...+.-|+|+-..|+.-|+.++|..+-+
T Consensus        92 ~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   92 QDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             chHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            66666666666665 4455556666666666666666665543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.33  E-value=3.5e-12  Score=87.82  Aligned_cols=54  Identities=43%  Similarity=0.607  Sum_probs=39.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHH
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELA  116 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll  116 (434)
                      |.||||+|+..|+.+++++|++++.++ +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888887776 666888888888888888888888775

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=8.3e-12  Score=130.30  Aligned_cols=105  Identities=24%  Similarity=0.222  Sum_probs=84.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHH
Q 041009           65 ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE  144 (434)
Q Consensus        65 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  144 (434)
                      .|+.|+..|+.+.++.|++.++++ +.+|.+|.||||+|+..|+.+++++|++++++. +.+|.+|.||||+|+.+|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHH
Confidence            477888888888888888888877 778888888888888888888888888888877 667888888888888888888


Q ss_pred             HHHHHHHh-------cCCCccccCCCCCCCcHHHHHH
Q 041009          145 ALKFLLEN-------MGDSELLNAKDDYGMTILHLAV  174 (434)
Q Consensus       145 ~v~~Ll~~-------~~~~~~~~~~d~~g~t~LhlA~  174 (434)
                      ++++|+++       +++   .+..+..|++|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~---~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGAN---AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCC---CCccccCCCCccchhh
Confidence            88888887       555   5556666666655443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.32  E-value=1.3e-12  Score=90.46  Aligned_cols=48  Identities=35%  Similarity=0.443  Sum_probs=25.8

Q ss_pred             ccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHH
Q 041009          159 LNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDIL  207 (434)
Q Consensus       159 ~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la  207 (434)
                      ++.+|..|+||||+|+..|+.+++++|++.+. |++.+|++|+||+|+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~-d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA-DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC-CCCCCcCCCCCHHHhC
Confidence            67777777777777777777777777775555 7777777777777765

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=1.5e-11  Score=108.93  Aligned_cols=115  Identities=16%  Similarity=0.147  Sum_probs=99.5

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      +||.+....|+..-.+   .+..|.+|.|+|..|+..|+.++|+.|++.|++++..++..+.||||+|+-+|+.++.+.|
T Consensus        22 Kndt~~a~~LLs~vr~---vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrll   98 (396)
T KOG1710|consen   22 KNDTEAALALLSTVRQ---VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLL   98 (396)
T ss_pred             cCcHHHHHHHHHHhhh---hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHH
Confidence            5788888888886433   3778999999999999999999999999999999888888999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKP  120 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  120 (434)
                      ++.|+.. ...|.-|+|+-..|+..|+-++|..+-++-+
T Consensus        99 ldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t  136 (396)
T KOG1710|consen   99 LDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNHIT  136 (396)
T ss_pred             HhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcccc
Confidence            9999887 7788899999999999999999887765443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.32  E-value=1.9e-12  Score=89.66  Aligned_cols=55  Identities=35%  Similarity=0.479  Sum_probs=17.5

Q ss_pred             HhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 041009           48 LRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (434)
Q Consensus        48 l~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A  103 (434)
                      |++++..++..|..|.||||+||..|+.+++++|++.+.+. +.+|.+|+||+|+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            33443333444555555555555555555555555444444 44555555555544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=7.6e-12  Score=119.08  Aligned_cols=121  Identities=26%  Similarity=0.226  Sum_probs=104.7

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcH
Q 041009          100 LHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQI  179 (434)
Q Consensus       100 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~  179 (434)
                      |.-|+..|.+|+|+.++..-.|+ ...+++|-|+||-|+-.||.+||+||++.|++   +|+.|.+|+||||.|+..++.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan---VNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN---VNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc---ccCccCCCCchhhhhhhcCch
Confidence            35588999999999999877776 66688899999999999999999999999999   999999999999999999999


Q ss_pred             HHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHc
Q 041009          180 EAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA  226 (434)
Q Consensus       180 ~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~  226 (434)
                      .+++.|+++|+.-+...-.++.||.+-+-..  ..++..+.++|...
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~--eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEM--EEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchh--hhhHHHHHHHHHHH
Confidence            9999999999955666667899999876552  35667788888653

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.29  E-value=1.3e-11  Score=128.78  Aligned_cols=106  Identities=24%  Similarity=0.176  Sum_probs=96.4

Q ss_pred             CHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcC
Q 041009           98 NPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADK  177 (434)
Q Consensus        98 tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~  177 (434)
                      .+|+.|+..|+.+.++.|++.+++. +.+|.+|+||||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|+..|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad---vn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD---PTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCC
Confidence            3588999999999999999999987 67788999999999999999999999999999   8999999999999999999


Q ss_pred             cHHHHHHhhhc-------ccccccccccCCCCHHHHHH
Q 041009          178 QIEAIKLLTTS-------TAIEVNAVTANGFTAWDILA  208 (434)
Q Consensus       178 ~~~iv~~Ll~~-------~~~~~~~~n~~g~t~l~la~  208 (434)
                      +.+++++|+++       ++ +.+..+..|.+|+....
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga-~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGA-NAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHHHHHHhCCCcccccCC-CCCccccCCCCccchhh
Confidence            99999999988       55 77888888888876543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.77  E-value=5.1e-09  Score=105.04  Aligned_cols=145  Identities=17%  Similarity=0.108  Sum_probs=101.8

Q ss_pred             HHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009           76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD  155 (434)
Q Consensus        76 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  155 (434)
                      .+--++-+.+.+..+++|..|+|+||+|+..|..+++++|+++|.+..-.....|+||||-|+.+|+.+++..|+.+|..
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            35556666677778889999999999999999999999999999988666557799999999999999999999999987


Q ss_pred             CccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccc-cccccCCCCHHHHHHHccCCCchhHHHHHHHHcCC
Q 041009          156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEV-NAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA  228 (434)
Q Consensus       156 ~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~-~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~  228 (434)
                         +..+|++|.+||..-++-....+. .-...+. |+ ..-+|.++|.-+   ....+....+.+.++...|.
T Consensus       112 ---L~i~Dkeglsplq~~~r~~~~~i~-~~~d~pn-dvy~wG~N~N~tLGi---gn~~~~~~Pe~Vdlf~~Sg~  177 (1267)
T KOG0783|consen  112 ---LRIKDKEGLSPLQFLSRVLSSTIH-PVLDLPN-DVYGWGTNVNNTLGI---GNGKEPSSPERVDLFKTSGQ  177 (1267)
T ss_pred             ---eEEecccCCCHHHHHhhccccccc-cccCCcc-ceeEecccccccccc---cCCCCCCChHHhHHHHhccH
Confidence               888999999999887664332221 1111111 11 111223333222   23344556778887776554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=1.5e-08  Score=101.80  Aligned_cols=97  Identities=23%  Similarity=0.132  Sum_probs=85.8

Q ss_pred             HHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCC-CCCCHHHHHHHhCCHHHHHHHHHhCCc
Q 041009           43 FAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV-DGRNPLHLAAMRGHIDVLEELARAKPD  121 (434)
Q Consensus        43 ~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~-~g~tpL~~Aa~~g~~~~v~~Ll~~~~~  121 (434)
                      +...+-+.+.+..+..|..|+|+||+|+..|..+++++|+++|.++ ..+|. .|+||||-|+.+|++|++-.|+.++..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            4556667778888999999999999999999999999999999988 66665 599999999999999999999999977


Q ss_pred             ccccccCCCChHHHHHHHcC
Q 041009          122 AASARLIWGETILHLCVKHN  141 (434)
Q Consensus       122 ~~~~~~~~g~t~Lh~A~~~g  141 (434)
                      . ..+|++|.+||..-++-.
T Consensus       112 L-~i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  112 L-RIKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             e-EEecccCCCHHHHHhhcc
Confidence            6 788999999998877643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.66  E-value=6.8e-08  Score=93.23  Aligned_cols=119  Identities=21%  Similarity=0.125  Sum_probs=92.2

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCC-CCccCCCCCCCHHHHHHHhCCHH
Q 041009           32 LHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD-KCSDTDVDGRNPLHLAAMRGHID  110 (434)
Q Consensus        32 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~d~~g~tpL~~Aa~~g~~~  110 (434)
                      +..|+..++.--++....+|.++ ..++.+..+.||+|+..|+-|+|+++|++++. +.++.|..|.|+||.|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            45566777777777777777776 56677788888888888888888888888753 45667788888888888888888


Q ss_pred             HHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 041009          111 VLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN  152 (434)
Q Consensus       111 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  152 (434)
                      +..+|++.++.. ...|..|.||-.-|-+.|..+..-||-.+
T Consensus       949 vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            888888888776 55677788888888888888888887654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.64  E-value=2.1e-07  Score=88.69  Aligned_cols=95  Identities=22%  Similarity=0.261  Sum_probs=84.9

Q ss_pred             cccCCCCCCH------HHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCC
Q 041009           22 PTVNCLSETP------LHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD   95 (434)
Q Consensus        22 ~~~~~~g~t~------Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~   95 (434)
                      ..+|.+|-+.      ||..++.|+.+..-.||..|++.+....+.|.||||.|++.|+..-+++|+-.|+++ ...|.+
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~  199 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSS  199 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCC
Confidence            4456665554      899999999999999999999987777789999999999999999999999999998 889999


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHH
Q 041009           96 GRNPLHLAAMRGHIDVLEELAR  117 (434)
Q Consensus        96 g~tpL~~Aa~~g~~~~v~~Ll~  117 (434)
                      |+||+.+|-..||-++.+.|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999888887776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.64  E-value=1.2e-07  Score=91.53  Aligned_cols=118  Identities=17%  Similarity=0.070  Sum_probs=82.8

Q ss_pred             HHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCc-ccccccCCCChHHHHHHHcCCHHH
Q 041009           67 HIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD-AASARLIWGETILHLCVKHNQLEA  145 (434)
Q Consensus        67 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~Lh~A~~~g~~~~  145 (434)
                      .-|+..++.--++..-..|.++ .+++.+-.+.||+|++.|+-++++++++++|. ..+..|..|+|+||-|+..++..+
T Consensus       871 l~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            3444445444444444455555 56777777888888888888888888887764 334556678888888887788788


Q ss_pred             HHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhc
Q 041009          146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS  188 (434)
Q Consensus       146 v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~  188 (434)
                      ..+|++.|+.   +...|..|.||-.-|-..|+.+...+|-..
T Consensus       950 c~~lvdagas---l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDAGAS---LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcchh---heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            8888887777   677777888888877777777777777544

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.62  E-value=3.7e-08  Score=93.27  Aligned_cols=93  Identities=25%  Similarity=0.231  Sum_probs=85.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHH
Q 041009          129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILA  208 (434)
Q Consensus       129 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~  208 (434)
                      ++...+.+|++.|....++-+.-.|.|   ++.+|.+.+|+||+|+..|+.+++++|++.-.++++.+|..|+||||-|.
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D---~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMD---LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhccc---ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            456788999999999999999988999   99999999999999999999999999999999999999999999999999


Q ss_pred             HccCCCchhHHHHHHHHcCC
Q 041009          209 QSKRDTKDWDIGELLRRAGA  228 (434)
Q Consensus       209 ~~~~~~~~~~i~~~L~~~g~  228 (434)
                      +    .++.+++++|.++..
T Consensus       582 ~----F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 H----FKHKEVVKLLEEAQY  597 (622)
T ss_pred             h----cCcHHHHHHHHHHhc
Confidence            8    788999999987643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.59  E-value=5.5e-08  Score=92.11  Aligned_cols=93  Identities=28%  Similarity=0.306  Sum_probs=57.3

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHH
Q 041009           93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHL  172 (434)
Q Consensus        93 d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~Lhl  172 (434)
                      +.++..++.+|++.|.+..++.+.-.+.|. +.+|.+.+|+||+|+..|+.+++++|++.....  .+.+|.+|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~--~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD--PDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCC--CChhhccCCCcchH
Confidence            344555666666666666666655555555 555666666666666666666666666543221  45666666666666


Q ss_pred             HHHcCcHHHHHHhhhc
Q 041009          173 AVADKQIEAIKLLTTS  188 (434)
Q Consensus       173 A~~~~~~~iv~~Ll~~  188 (434)
                      |...++.+++++|-+.
T Consensus       580 A~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhcCcHHHHHHHHHH
Confidence            6666666666666554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=3e-07  Score=88.74  Aligned_cols=92  Identities=26%  Similarity=0.329  Sum_probs=76.7

Q ss_pred             CHHHHHHhcCCHHHHHHHHhc-CCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCC
Q 041009           30 TPLHVAALLGHEDFAKEILRQ-KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH  108 (434)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~  108 (434)
                      -|||+++...+.+-....+.. -...++..|..|.||||+|+..|+.+.++.|+..+++. .++|++|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            459999998887766664443 34445788999999999999999999999999999988 8899999999999999999


Q ss_pred             HHHHHHHHHhCCcc
Q 041009          109 IDVLEELARAKPDA  122 (434)
Q Consensus       109 ~~~v~~Ll~~~~~~  122 (434)
                      .+++..++.+....
T Consensus       101 ~q~i~~vlr~~~~q  114 (560)
T KOG0522|consen  101 EQIITEVLRHLKYQ  114 (560)
T ss_pred             HHHHHHHHHHhHHH
Confidence            99998888765443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.45  E-value=2.3e-07  Score=54.79  Aligned_cols=27  Identities=37%  Similarity=0.511  Sum_probs=15.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCC
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDK   88 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~   88 (434)
                      |+||||+||..|+.|++++|+++++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            555666666666666666666555543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.44  E-value=2e-07  Score=55.07  Aligned_cols=25  Identities=44%  Similarity=0.541  Sum_probs=12.9

Q ss_pred             CCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          166 GMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       166 g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      |+||||+|++.|+.+++++|+++|+
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            4555555555555555555555543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.43  E-value=2.4e-07  Score=56.31  Aligned_cols=31  Identities=35%  Similarity=0.430  Sum_probs=16.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHhhhcccccccccc
Q 041009          166 GMTILHLAVADKQIEAIKLLTTSTAIEVNAVT  197 (434)
Q Consensus       166 g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n  197 (434)
                      |+||||+|+..|+.+++++|+++|+ +++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga-~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGA-DINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTS-CTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcC-CCCCCC
Confidence            5555555555555555555555544 555444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.41  E-value=4.7e-07  Score=55.03  Aligned_cols=27  Identities=41%  Similarity=0.468  Sum_probs=14.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCC
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDK   88 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~   88 (434)
                      |.||||+|+..|+.+++++|+++++++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            455555555555555555555555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.41  E-value=1e-06  Score=84.13  Aligned_cols=85  Identities=25%  Similarity=0.223  Sum_probs=56.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCc
Q 041009           99 PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQ  178 (434)
Q Consensus        99 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~  178 (434)
                      -||..++.|+.+..-.|+..|++.....-..|.||||+|++.|+..-+++|+-.|+|   ++..|.+|+||+.+|-..|+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD---~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD---PGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC---CCCCCCCCCcHHHHHHhcCc
Confidence            366666777777666666666666555555667777777777776666777777776   66677777777777766666


Q ss_pred             HHHHHHhh
Q 041009          179 IEAIKLLT  186 (434)
Q Consensus       179 ~~iv~~Ll  186 (434)
                      -++.+.|+
T Consensus       213 ~~laeRl~  220 (669)
T KOG0818|consen  213 HELAERLV  220 (669)
T ss_pred             hHHHHHHH
Confidence            66555444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.28  E-value=2.3e-06  Score=82.74  Aligned_cols=66  Identities=26%  Similarity=0.307  Sum_probs=60.1

Q ss_pred             ccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCC
Q 041009           21 RPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD   87 (434)
Q Consensus        21 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~   87 (434)
                      ....|..|+||||+|+..||.+.++.|+..++++ ..+|..|++|||.|+..|+.+++..++.+...
T Consensus        48 id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~~  113 (560)
T KOG0522|consen   48 IDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNEQIITEVLRHLKY  113 (560)
T ss_pred             eccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCHHHHHHHHHHhHH
Confidence            3557889999999999999999999999999998 78899999999999999999999988887544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.18  E-value=4.9e-06  Score=80.98  Aligned_cols=88  Identities=24%  Similarity=0.218  Sum_probs=50.3

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCch---hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCC
Q 041009           32 LHVAALLGHEDFAKEILRQKPRI---AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH  108 (434)
Q Consensus        32 Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~  108 (434)
                      |..|+...+...+-.||.+|...   ....+.+|.|+||+||+.|+..+.++|+-.+.+. ..+|.+|.|+|.+|-..|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            44455555555566666555321   1222445566666666666666666666666555 5566666666666666666


Q ss_pred             HHHHHHHHHhCC
Q 041009          109 IDVLEELARAKP  120 (434)
Q Consensus       109 ~~~v~~Ll~~~~  120 (434)
                      -+++..|+.+|.
T Consensus       707 qec~d~llq~gc  718 (749)
T KOG0705|consen  707 QECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHHcCC
Confidence            666666666543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.16  E-value=8.9e-06  Score=83.18  Aligned_cols=122  Identities=25%  Similarity=0.185  Sum_probs=98.3

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHhcCCc---hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHH
Q 041009           26 CLSETPLHVAALLGHEDFAKEILRQKPR---IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHL  102 (434)
Q Consensus        26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~  102 (434)
                      ..++--.-.|+..|+...|+.+++....   ..+..|.-|.++|+.|..+.+.|+.++|++++-..        ..+|..
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHH
Confidence            3456677889999999999999987654   34788999999999999999999999999986443        348999


Q ss_pred             HHHhCCHHHHHHHHHhCCccc---------ccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009          103 AAMRGHIDVLEELARAKPDAA---------SARLIWGETILHLCVKHNQLEALKFLLENMGD  155 (434)
Q Consensus       103 Aa~~g~~~~v~~Ll~~~~~~~---------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  155 (434)
                      |+..|.++.++.++.+.....         ...-..+.||+.+||..++.|++++|+++|+.
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            999999999999998643321         12223478999999999999999999999876

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.12  E-value=2.7e-06  Score=88.66  Aligned_cols=127  Identities=19%  Similarity=0.117  Sum_probs=54.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhh-CCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHH
Q 041009           59 DSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC  137 (434)
Q Consensus        59 d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  137 (434)
                      ...|.+-+|+++..++.-.++.+++. +... ...|.+|...+|. |..++++..-+++.-.....+.+|.+|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            33444444444444444444444443 2211 2333333333444 2233334443333333333344444444444444


Q ss_pred             HHcCCHHHHHHHHHhcCCCcc---ccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009          138 VKHNQLEALKFLLENMGDSEL---LNAKDDYGMTILHLAVADKQIEAIKLLTT  187 (434)
Q Consensus       138 ~~~g~~~~v~~Ll~~~~~~~~---~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~  187 (434)
                      +.+|+..++..|++.|+++.+   .+..+..|.|+-.+|-.+|+..+..+|-+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            444444444444444433221   12223345666666666666555555544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.11  E-value=8.2e-06  Score=79.47  Aligned_cols=94  Identities=24%  Similarity=0.203  Sum_probs=74.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHcc
Q 041009          133 ILHLCVKHNQLEALKFLLENMGDSELLNA-KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK  211 (434)
Q Consensus       133 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~  211 (434)
                      -|.-|+.......+-+|+.+|....+.+. .+.+|+|+||+|+..|+....++|+-+|. |+.++|.+|+|+|-+|.+  
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~-dv~~rda~g~t~l~yar~--  703 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGV-DVMARDAHGRTALFYARQ--  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCc-cceecccCCchhhhhHhh--
Confidence            45667777777777888888866543333 35577899999999999999999987776 999999999999998887  


Q ss_pred             CCCchhHHHHHHHHcCCCcc
Q 041009          212 RDTKDWDIGELLRRAGAISA  231 (434)
Q Consensus       212 ~~~~~~~i~~~L~~~g~~~~  231 (434)
                        .+..++.+.|+.+|-...
T Consensus       704 --a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  704 --AGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             --cccHHHHHHHHHcCCCcc
Confidence              677889999998887643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.07  E-value=1.3e-05  Score=82.13  Aligned_cols=113  Identities=21%  Similarity=0.174  Sum_probs=93.1

Q ss_pred             CCChHHHHHHHhcCC-CcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHH
Q 041009            2 AGSVNTLLELRQQDP-LIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~   80 (434)
                      +||...|+..++... ..++.|+.|.-|+++|+.|+.+.|.++++.|++..-+.        ..+|.+|+..|..++|+.
T Consensus        35 ~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~  106 (822)
T KOG3609|consen   35 NGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVEL  106 (822)
T ss_pred             cCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHH
Confidence            589999999998543 34667889999999999999999999999999976543        458899999999999999


Q ss_pred             HHhhCCCC---------CccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcc
Q 041009           81 LLQVIPDK---------CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA  122 (434)
Q Consensus        81 Ll~~~~~~---------~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~  122 (434)
                      ++.+....         ....-..+.|||..||..+++|+++.|+.++...
T Consensus       107 ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  107 LLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            99874332         0122345689999999999999999999988764

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.96  E-value=1.9e-05  Score=66.62  Aligned_cols=65  Identities=22%  Similarity=0.099  Sum_probs=42.1

Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCC
Q 041009           56 EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKP  120 (434)
Q Consensus        56 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  120 (434)
                      +.+|..||||+++|+..|+.+.+.+|+.++...+...|..|.+++.+|-+.|+.++++.|.+...
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            55666666666666666666666666666633335666666666666666666666666666533

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.94  E-value=1.8e-05  Score=73.50  Aligned_cols=122  Identities=28%  Similarity=0.308  Sum_probs=80.5

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCC
Q 041009           29 ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH  108 (434)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~  108 (434)
                      .--|..||+.|+.+.|+.|++.|.++ |..|...++||.+|+-.||.+++++||++|+-. ..-.-+|..+ |+++.+.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLnd~  113 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALNDR  113 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhhHH
Confidence            34589999999999999999988887 899999999999999999999999999999864 3333345544 45554433


Q ss_pred             H-------HHHHHHHHhCCcccccccCCCChHHH------HHHHcCC-HHHHHHHHHhc
Q 041009          109 I-------DVLEELARAKPDAASARLIWGETILH------LCVKHNQ-LEALKFLLENM  153 (434)
Q Consensus       109 ~-------~~v~~Ll~~~~~~~~~~~~~g~t~Lh------~A~~~g~-~~~v~~Ll~~~  153 (434)
                      +       ++.+.+=.+.|-..........|.||      ++.++|. .+.=++++..+
T Consensus       114 IR~mllsydi~KA~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~ar  172 (516)
T KOG0511|consen  114 IRRMLLSYDILKAFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEAR  172 (516)
T ss_pred             HHHHHHHHHHHHHhhccCCcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhh
Confidence            2       33333333333332222223334443      3444443 34556666544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.88  E-value=1.4e-05  Score=83.46  Aligned_cols=127  Identities=19%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHHHh-CCcccccccCCCChHHHHHHHcCCHHHHHHHHHh-cCCCccccCCCCCCCc
Q 041009           91 DTDVDGRNPLHLAAMRGHIDVLEELARA-KPDAASARLIWGETILHLCVKHNQLEALKFLLEN-MGDSELLNAKDDYGMT  168 (434)
Q Consensus        91 ~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t  168 (434)
                      ...-.|++.+|.++..+..-.++.+++- +... ...|.+|...+|+++ .++.+..-+++.. |..   ++.+|..|+|
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~a---i~i~D~~G~t  643 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGYEWAFLPISADGVA---IDIRDRNGWT  643 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCCceeEEEEeecccc---cccccCCCCc
Confidence            3455678888888888888888777774 2222 344666777777744 4445554444433 333   7778888888


Q ss_pred             HHHHHHHcCcHHHHHHhhhcccc-----cccccccCCCCHHHHHHHccCCCchhHHHHHHHHc
Q 041009          169 ILHLAVADKQIEAIKLLTTSTAI-----EVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA  226 (434)
Q Consensus       169 ~LhlA~~~~~~~iv~~Ll~~~~~-----~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~  226 (434)
                      |||+|+..|+.+++..|.+.++.     |++..+-.|.|+-++|..    .++..+..+|.+.
T Consensus       644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s----~g~~gia~~lse~  702 (975)
T KOG0520|consen  644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA----NGHKGIAGYLSEK  702 (975)
T ss_pred             ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc----ccccchHHHHhhh
Confidence            88888888888888888766552     233334467788877765    3444454544443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.86  E-value=1.4e-05  Score=83.76  Aligned_cols=78  Identities=33%  Similarity=0.397  Sum_probs=74.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHH
Q 041009          129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILA  208 (434)
Q Consensus       129 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~  208 (434)
                      .|.++||.|+..+...++++|++.|++   +|..|..|+||||.+...|+...+..++++++ +.++.+.+|.+|+++|.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~---vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a-~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD---VNALDSKGRTPLHHATASGHTSIACLLLKRGA-DPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc---chhhhccCCCcchhhhhhcccchhhhhccccc-cccccCccCcchhhHHh
Confidence            479999999999999999999999999   99999999999999999999999999999888 99999999999999998


Q ss_pred             Hc
Q 041009          209 QS  210 (434)
Q Consensus       209 ~~  210 (434)
                      ..
T Consensus       731 ~~  732 (785)
T KOG0521|consen  731 EA  732 (785)
T ss_pred             hh
Confidence            74

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.84  E-value=1.7e-05  Score=83.18  Aligned_cols=87  Identities=29%  Similarity=0.331  Sum_probs=67.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 041009           60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVK  139 (434)
Q Consensus        60 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  139 (434)
                      ..|.|+||.|+..|..-++++|++.+++. +..|..|.+|+|.+...|+...+..+++++++. ...+.+|.+++++|.+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHHhh
Confidence            45678888888888888888888888885 788888888888888888888888888887777 6667778888888877


Q ss_pred             cCCHHHHHH
Q 041009          140 HNQLEALKF  148 (434)
Q Consensus       140 ~g~~~~v~~  148 (434)
                      ..+.+++-+
T Consensus       732 ~~~~d~~~l  740 (785)
T KOG0521|consen  732 AANADIVLL  740 (785)
T ss_pred             hccccHHHH
Confidence            655444433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.79  E-value=5.2e-05  Score=64.02  Aligned_cols=69  Identities=17%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             cccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCC
Q 041009           20 ERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK   88 (434)
Q Consensus        20 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~   88 (434)
                      +.+..|.+|.|||+.|+..|+.+.+.+|+.++...+...|..|.+++.+|-..|..++++.|.+...+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            347789999999999999999999999999997777999999999999999999999999999886554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.69  E-value=0.00011  Score=68.38  Aligned_cols=74  Identities=24%  Similarity=0.199  Sum_probs=62.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 041009           63 SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVK  139 (434)
Q Consensus        63 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  139 (434)
                      .--|..||+.|+.+.++.|++.|.++ +..|....+||.+|+..||.+++++|+++|+-+ .....+|.-++ +++.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~-YgaL  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCH-YGAL  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhh-hhhh
Confidence            34589999999999999999988887 899999999999999999999999999999987 44445566553 4433

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.59  E-value=0.0013  Score=63.57  Aligned_cols=69  Identities=20%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             cCCHHHHHHHHHhcCCCcc---ccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          140 HNQLEALKFLLENMGDSEL---LNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       140 ~g~~~~v~~Ll~~~~~~~~---~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      ......+++|.+++...++   ....|..-.|+||+|+..|..+++.+|++.++ |+..+|..|.||++++..
T Consensus       401 ~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~-Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  401 KPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC-DPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             cCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC-CchhcccCCCCccccccc
Confidence            3446678888887655221   22345567899999999999999999999995 999999999999998764

>smart00248 ANK ankyrin repeats

Probab=96.28  E-value=0.0073  Score=33.97  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=12.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCC
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIP   86 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~   86 (434)
                      |.||+|+|+..|+.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3445555555555555555544433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.25  E-value=0.0074  Score=33.94  Aligned_cols=28  Identities=36%  Similarity=0.440  Sum_probs=25.2

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCCch
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQKPRI   54 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~   54 (434)
                      .|.||+|+|+..|+.++++.|++.+.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3789999999999999999999988754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.68  E-value=0.023  Score=55.33  Aligned_cols=42  Identities=38%  Similarity=0.419  Sum_probs=26.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  104 (434)
                      -.|+||+|+..|.-+++.+||+.++|+ ..+|..|.||..+++
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            456666666666666666666666555 556666666665554

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.06  E-value=0.16  Score=44.68  Aligned_cols=47  Identities=13%  Similarity=0.098  Sum_probs=32.7

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhh
Q 041009           30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV   84 (434)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~   84 (434)
                      -.|--|+..-+.+.+..++..+.+-        .+++.+|..++..+++.+|+.+
T Consensus       155 isledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhh
Confidence            4456677777777777766654443        4677788877778888888876

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.32  E-value=0.3  Score=43.03  Aligned_cols=120  Identities=16%  Similarity=0.236  Sum_probs=83.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC--CccccCCCCCCCcHHHHHH--
Q 041009           99 PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD--SELLNAKDDYGMTILHLAV--  174 (434)
Q Consensus        99 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~d~~g~t~LhlA~--  174 (434)
                      .|--|+...+.+-+..++....+        -.+++-++..++..+++-+|+.+..-  .+++....  +---+.++.  
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHhh
Confidence            35567777777777666653222        35688889988899999999976432  11122221  222344443  


Q ss_pred             HcCcHHHHHHhhhccccccccc---ccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          175 ADKQIEAIKLLTTSTAIEVNAV---TANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       175 ~~~~~~iv~~Ll~~~~~~~~~~---n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      ...+.++.++++++|-+++|..   -+.|.|.||-|.+    .+..+++.+|+++|+....
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~K----y~~~emi~~Llk~GA~~~k  282 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMK----YKNSEMIAFLLKYGAISGK  282 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHh----cCcHHHHHHHHHcCccccC
Confidence            3357889999999999998865   4689999999999    7778999999999997543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.96  E-value=1.3  Score=37.98  Aligned_cols=141  Identities=11%  Similarity=0.007  Sum_probs=88.7

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  106 (434)
                      +-...|.-|++++-..+++..-+.....    -...++.+-.||+..+.|+|+++-+.-      .-.+-.+-+..|...
T Consensus        45 ~~~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL------~i~~~~~iFdIA~~~  114 (192)
T PF03158_consen   45 DMWCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNL------HIYNPEDIFDIAFAK  114 (192)
T ss_pred             CHHHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhcc------CCCCchhhhhhhhhc
Confidence            3445677788888888777765532211    134567788899999999999984431      122334556778877


Q ss_pred             CCHHHHH----HHHHhCCcccccccCC--CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHH
Q 041009          107 GHIDVLE----ELARAKPDAASARLIW--GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIE  180 (434)
Q Consensus       107 g~~~~v~----~Ll~~~~~~~~~~~~~--g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~  180 (434)
                      .+.+...    .++++.... ...|..  -..-|..|+..|-...+-..++.|++   ++      +++|-.|+..++.+
T Consensus       115 kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~---~~------~~vls~Av~ynhRk  184 (192)
T PF03158_consen  115 KDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN---VD------IIVLSQAVKYNHRK  184 (192)
T ss_pred             cchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc---cc------HHHHHHHHHhhHHH
Confidence            7776532    233332211 111100  11346678888888888888888776   22      28888999998888


Q ss_pred             HHHHhhh
Q 041009          181 AIKLLTT  187 (434)
Q Consensus       181 iv~~Ll~  187 (434)
                      ++.+++.
T Consensus       185 IL~yfi~  191 (192)
T PF03158_consen  185 ILDYFIR  191 (192)
T ss_pred             HHHHhhc
Confidence            8887763

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=90.40  E-value=1.9  Score=36.98  Aligned_cols=111  Identities=19%  Similarity=0.169  Sum_probs=76.4

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHH----HHHHhhCCCCCccCCC--CCCCHH
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIV----KALLQVIPDKCSDTDV--DGRNPL  100 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv----~~Ll~~~~~~~~~~d~--~g~tpL  100 (434)
                      ..++.+-.||+..+.|+|+++-+.-.-      .+-.+-+-.|...++.+..    .+++++.... .-.|.  --..-|
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl  147 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHL  147 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHH
Confidence            367899999999999999999553221      1223556778888887652    2233332111 00110  011346


Q ss_pred             HHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHH
Q 041009          101 HLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE  151 (434)
Q Consensus       101 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  151 (434)
                      ..|+..|-.+.+...+++|.+.       ..++|..|+++++..++.+++.
T Consensus       148 ~~a~~kgll~F~letlkygg~~-------~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  148 EKAAAKGLLPFVLETLKYGGNV-------DIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHCCCHHHHHHHHHcCCcc-------cHHHHHHHHHhhHHHHHHHhhc
Confidence            8899999999999999988776       2379999999999999998864

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.71  E-value=0.8  Score=33.41  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=29.2

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhh
Q 041009           29 ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV   84 (434)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~   84 (434)
                      +..+..|+..|+.|+++.+++.+...        ...+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34556667777777777666543211        2456666666666677776665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.88  E-value=1.1  Score=32.76  Aligned_cols=47  Identities=17%  Similarity=0.140  Sum_probs=33.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHh
Q 041009           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA  118 (434)
Q Consensus        64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~  118 (434)
                      ..+..|+..|+.|+++.+++.+...        ...+..|+...+.+++++|+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4567888888888888887654211        3467788888888888888875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.46  E-value=2.2  Score=31.08  Aligned_cols=48  Identities=23%  Similarity=0.288  Sum_probs=34.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041009          307 AASSFVVWNTIGFLASLSLILLLIIDLPINRILFAWILAWIMSLAIVAMAITYIVSIA  364 (434)
Q Consensus       307 ~f~~f~~~~~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  364 (434)
                      .--+++++|++||..|+....+=++-+|..+..          -...+|.++|.+|..
T Consensus        12 dspawi~f~waafg~s~~m~~~gi~~lPVD~w~----------KGy~~MG~lfltgSt   59 (95)
T COG4298          12 DSPAWIMFNWAAFGASYFMLGLGIWLLPVDLWT----------KGYWAMGILFLTGST   59 (95)
T ss_pred             CCchhHhHHHHHHHHHHHHHHHHhheechHHHH----------HHHHHHHHHHHhcch
Confidence            344677889999999999888888878876532          123347777777753

>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins

Probab=80.95  E-value=40  Score=32.97  Aligned_cols=21  Identities=10%  Similarity=0.232  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 041009          347 IMSLAIVAMAITYIVSIALIG  367 (434)
Q Consensus       347 ~~~~~~~~~~~a~~~~~~~~~  367 (434)
                      .....+..++.+|+.++....
T Consensus        93 ~~q~vLg~Figtfvy~l~~l~  113 (371)
T PF10011_consen   93 VTQVVLGTFIGTFVYSLLVLI  113 (371)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            445666667777777776654

Their exact function, has not, as yet, been defined.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	434
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-13
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-14
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-12
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-12
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-11
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-10
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		9e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-06
1uoh_A	226	Human Gankyrin Length = 226		2e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		7e-06
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		8e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		6e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		6e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		7e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-04
2nyj_A	273	Crystal Structure Of The Ankyrin Repeat Domain Of T		4e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		6e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		9e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAA 123
           + LH+A++ G++ +VK LL+   D  +  D +GR PLHLAA  GH++V++ L  A  D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
           +A+   G T LHL  ++  LE +K LLE   D   +NAKD  G T LHLA  +  +E +K
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 184 LLTTSTA 190
           LL  + A
Sbjct: 119 LLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
           +GR PLHLAA  GH++V++ L  A  D  +A+   G T LHL  ++  LE +K LLE   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDT 214
           D   +NAKD  G T LHLA  +  +E +KLL  + A +VNA   NG T   + A++    
Sbjct: 60  D---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGH-- 113
Query: 215 KDWDIGELLRRAGA 228
              ++ +LL  AGA
Sbjct: 114 --LEVVKLLLEAGA 125

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQ 83
           N   ETPLH+AA  GH + AK +L+ K ++ A+  D +  + LH A++ G+  +VK LL+
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLE 101
Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI-WGETILHLCVKHNQ 142
              +    T   G  PLH+AA  GH++ +  LA  + +A+ A +   G T LH+  K+ +
Sbjct: 102 NNANPNLATTA-GHTPLHIAAREGHVETV--LALLEKEASQACMTKKGFTPLHVAAKYGK 158
Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
           +   + LLE        NA    G+T LH+AV    ++ +KLL        ++   NG+T
Sbjct: 159 VRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYT 214
Query: 203 AWDILAQSKRDTKDWDIGE-LLRRAGAISAQDLQ 235
              I A+  +     ++   LL+  G+ +A+ +Q
Sbjct: 215 PLHIAAKQNQ----VEVARSLLQYGGSANAESVQ 244

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 9/133 (6%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D  G+ PLHLAA++GH++++E L +   D  +A  + G+T LHL   +  LE ++ LL+N
Sbjct: 44  DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM-GDTPLHLAALYGHLEIVEVLLKN 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
             D   +NA D YG T LHLA     +E +++L    A +VNA    G TA+DI      
Sbjct: 103 GAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI----SI 154
Query: 213 DTKDWDIGELLRR 225
           D  + D+ E+L++
Sbjct: 155 DNGNEDLAEILQK 167

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D DG  PLHLAA  GH++++E L +A  D  +A+   G T LHL  +   LE ++ LL+ 
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
             D   +NAKD  G T LHLA  +  +E +++L  + A +VNA    G T +D+      
Sbjct: 91  GAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAI---- 142
Query: 213 DTKDWDIGELLRRA 226
           D  + DI E+L++A
Sbjct: 143 DNGNEDIAEVLQKA 156

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D DG  PLHLAA  GH++++E L +A  D  +A+   G T LHL  +   LE ++ LL+ 
Sbjct: 44  DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
             D   +NAKD  G T LHLA  +  +E +++L  + A +VNA    G TA+DI      
Sbjct: 103 GAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTAFDI----SI 154
Query: 213 DTKDWDIGELLR 224
           D  + D+ E+L+
Sbjct: 155 DNGNEDLAEILQ 166

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D DG  PLHLAA  GH++++E L +A  D  +A+   G T LHL  +   LE ++ LL+ 
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
             D   +NAKD  G T LHLA  +  +E +++L  + A +VNA    G T +D+  +   
Sbjct: 91  GAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAIREGH 146
Query: 213 DTKDWDIGELLRRA 226
           +    DI E+L++A
Sbjct: 147 E----DIAEVLQKA 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 69  ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
           A++ G    VK LL+   D  + +D DG+ PLHLAA  GH +V++ L     D  +A+  
Sbjct: 11  AAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDS 68
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
            G+T LHL  ++   E +K LL    D    NAKD  G T LHLA  +   E +KLL + 
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
            A + N   ++G T  D+     R+  + ++ +LL + G 
Sbjct: 126 GA-DPNTSDSDGRTPLDLA----REHGNEEVVKLLEKQGG 160

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D  G  PLHLAA  GH++++E L +   D  +A+   G T LHL  +   LE ++ LL+N
Sbjct: 44  DFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
             D   +NA D +G T LHLA     +E +++L  + A +VNA    G TA+DI      
Sbjct: 103 GAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA-DVNAQDKFGKTAFDI----SI 154
Query: 213 DTKDWDIGELLRR 225
           D  + D+ E+L++
Sbjct: 155 DNGNEDLAEILQK 167

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           DV G  PLHLAA  GH++++E L +   D  +A    G T LHL      LE ++ LL+N
Sbjct: 44  DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
             D   +NAKDD G+T LHLA     +E +++L    A +VNA    G TA+DI   +  
Sbjct: 103 GAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISINNGN 158
Query: 213 DTKDWDIGELLRR 225
           +    D+ E+L++
Sbjct: 159 E----DLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
           TD  G  PLHLAA  GH++++E L +   D  +A   +G T LHL   +  LE ++ LL+
Sbjct: 43  TDWLGHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
           +  D   +NAKD  G T LHLA  D  +E +++L    A +VNA    G TA+DI     
Sbjct: 102 HGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI----S 153
Query: 212 RDTKDWDIGELLRR 225
            D  + D+ E+L++
Sbjct: 154 IDNGNEDLAEILQK 167

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
           +GR PLHLAA  GH++V++ L  A  D  +A+   G T LHL  ++  LE +K LLE   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
           D   +NAKD  G T LHLA  +  +E +KLL  + A
Sbjct: 60  D---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
           TD DG  PLHLAA  GH++++E L +   D  ++ L  G T LHL      LE ++ LL+
Sbjct: 43  TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL-TGITPLHLAAATGHLEIVEVLLK 101
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
           +  D   +NA D+ G T LHLA     +E +++L    A +VNA    G TA+DI     
Sbjct: 102 HGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----S 153
Query: 212 RDTKDWDIGELLR 224
            D  + D+ E+L+
Sbjct: 154 IDNGNEDLAEILQ 166

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 69  ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
           A++ G    VK L++   D  + +D DGR PLH AA  GH ++++ L     D  +A+  
Sbjct: 11  AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDS 68
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
            G T LH   K    E +K L+    D   +NAKD  G T LH A  +   E +KLL + 
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGAD---VNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
            A +VN   ++G T  D+     R+  + +I +LL + G 
Sbjct: 126 GA-DVNTSDSDGRTPLDLA----REHGNEEIVKLLEKQGG 160

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
           TD  G  PLHLAA  GH++++E L +   D  +A  I G T LHL      LE ++ LL+
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLK 101
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
           +  D   +NA D +G T LHLA     +E +++L    A +VNA    G TA+DI     
Sbjct: 102 HGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----S 153
Query: 212 RDTKDWDIGELLRR 225
            D  + D+ E+L++
Sbjct: 154 IDNGNEDLAEILQK 167

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 69  ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
           A++ G    VK LL+   D  + +D DGR PLH AA  GH ++++ L     D  +A+  
Sbjct: 11  AAENGNKDRVKDLLENGADPNA-SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDS 68
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
            G T LH   ++   E +K LL    D    NAKD  G T LH A  +   E +KLL + 
Sbjct: 69  DGRTPLHYAAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
            A + N   ++G T  D+     R+  + +I +LL + G 
Sbjct: 126 GA-DPNTSDSDGRTPLDLA----REHGNEEIVKLLEKQGG 160

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
           TD  G  PLHLAA  GH++++E L +   D  +A  I G T LHL      LE ++ LL+
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLK 101
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
           +  D   +NA D +G T LHLA     +E +++L    A +VNA    G TA+DI     
Sbjct: 102 HGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----S 153
Query: 212 RDTKDWDIGELLRR 225
            D  + D+ E+L++
Sbjct: 154 IDNGNEDLAEILQK 167

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           +   +TPLH+AA +GH +  + +L+    +   LD   S+ LH+A+++G++ IV+ LL+ 
Sbjct: 44  DTYGDTPLHLAARVGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQ 142
             D  +D D  G  PLHLAA  GH++++E L +   D  +A+  +G+T   + + +  
Sbjct: 103 GADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGN 158

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
           +A   +G+T LHL  +   LE ++ LL+N  D   +NA D  G T LHLA     +E ++
Sbjct: 41  NAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD---VNALDFSGSTPLHLAAKRGHLEIVE 97
Query: 184 LLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
           +L    A +VNA    G T   + A    DT   +I E+L + GA ++AQD
Sbjct: 98  VLLKYGA-DVNADDTIGSTPLHLAA----DTGHLEIVEVLLKYGADVNAQD 143

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 69  ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
           A++ G    VK L++   D  + +D DGR PLH AA  GH +V++ L     D  +A+  
Sbjct: 11  AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDS 68
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
            G T LH   ++   E +K L+    D   +NAKD  G T LH A  +   E +KLL + 
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
            A +VN   ++G T  D+     R+  + ++ +LL + G 
Sbjct: 126 GA-DVNTSDSDGRTPLDLA----REHGNEEVVKLLEKQGG 160

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
           G  PLHLAA  GH++++E L +   D  +A    G T LHL      LE ++ LL+N  D
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTK 215
              +NA D  G T LHLA     +E +++L    A +VNA    G TA+DI      D  
Sbjct: 106 ---VNANDHNGFTPLHLAANIGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----SIDNG 157
Query: 216 DWDIGELLRR 225
           + D+ E+L++
Sbjct: 158 NEDLAEILQK 167

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
           TD +G  PLHLAA  G ++++E L +   D  +A    G T LHL      LE ++ LL+
Sbjct: 35  TDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI-LAQS 210
           +  D   +NA D  G T LHLA    Q+E +++L    A +VNA  A G TA+DI + Q 
Sbjct: 94  HGAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA-DVNAQDALGLTAFDISINQG 149
Query: 211 KRD 213
           + D
Sbjct: 150 QED 152

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D  G  PLHLAA+ GH++++E L +   D  +A  ++G T LHL      LE ++ LL+ 
Sbjct: 44  DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD-VYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
             D   +NA D  G T LHLA  +  +E +++L    A +VNA    G TA+DI
Sbjct: 103 GAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
           D + S+ LH+A+  G+  IV+ LL+   D  +  D DG  PLHLAA  GH++++E L + 
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
             D  +A+  +G T LHL      LE ++ LL++  D   +NA+D +G T   +++
Sbjct: 103 GAD-VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDA-ASARLIWGETILHLCVKHNQLEALKFLLENMG 154
           G  PLHL    GH++++E L +   D  AS +  W  T LHL      LE ++ LL+   
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW--TPLHLAAYRGHLEIVEVLLKYGA 104
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDT 214
           D   +NA D  G T LHLA  D  +E +++L    A +VNA    G TA+DI      D 
Sbjct: 105 D---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI----SIDN 156
Query: 215 KDWDIGELLRR 225
            + D+ E+L++
Sbjct: 157 GNEDLAEILQK 167

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
           D+  ++ LH+A+  G++ IV+ LL+   D    +DV G  PLHLAA  GH++++E L + 
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
             D  +A    G T LHL  K   LE ++ LL++  D   +NA+D +G T   +++
Sbjct: 103 GAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D  G  PLHLAA  GH++++E L +   D  +A    G T L L      LE ++ LL+N
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
             D   +NA D  G T LHLA     +E +++L  + A +VNA    G TA+DI      
Sbjct: 103 GAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDI----SI 154
Query: 213 DTKDWDIGELLRR 225
           D  + D+ E+L++
Sbjct: 155 DNGNEDLAEILQK 167

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
           G  PLHLAA RGH++++E L +   D  +AR IWG T LHL      LE ++ LLE   D
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 156 SELLNAKDDYGMTILHLAV 174
              +NA+D +G T   +++
Sbjct: 106 ---VNAQDKFGKTAFDISI 121

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 28  SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
             TPLH+AA +GH +  + +LR    +   +D+  ++ LH+A+  G++ IV+ LL+   D
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
             +  D  G  PL+LAA  GH++++E L +   D  +A+  +G+T   + +
Sbjct: 94  -VNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 142

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
           G  PLHLAA RGH++++E L +   D  +A  IWG T LHL      LE ++ LLE   D
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 156 SELLNAKDDYGMTILHLAV 174
              +NA+D +G T   +++
Sbjct: 106 ---VNAQDKFGKTAFDISI 121

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ----VI 85
           +PLH AA  GH D    +++    I +     + + L  A++  ++  VK L++    V 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL-------ARAKPDAASARLIWGETILHLCV 138
           P      D +G   LHLAA +GH +V++ L          + D     +IW     H   
Sbjct: 72  P-----KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH--- 123
Query: 139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTA 198
               ++ +K LL    D   +N +D+     LH A     ++  ++L  +   +++AV  
Sbjct: 124 ----VDLVKLLLSKGSD---INIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNI 175
Query: 199 NGFTAWDILAQSKR 212
           +G +   I A+  R
Sbjct: 176 HGDSPLHIAARENR 189

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
           G  PLHLAA RGH++++E L +   D  +A   WG T LHL      LE ++ LLE   D
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 156 SELLNAKDDYGMTILHLAV 174
              +NA+D +G T   +++
Sbjct: 106 ---VNAQDKFGKTAFDISI 121

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
           DG  PLH AA  GH + +++L     D  +AR   G T LHL  K+   E +K LL    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVT 197
           D   +NA+   G T  HLA  +   E +KLL    A +VNA +
Sbjct: 67  D---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-DVNARS 105

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 26  CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV- 84
           C+S   +   A  G  D  KE +     +A   D    +ALH A   G+  IV+ LLQ+ 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
           +P   +D D  G +PLH+AA  G  ++++ L   K    +A    G T LH     N+ E
Sbjct: 64  VP--VNDKDDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
               LLE   + +   AKD Y  T +H A A   ++ + +L
Sbjct: 121 IAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHIL 158

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 26  CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV- 84
           C+S   +   A  G  D  KE +     +A   D    +ALH A   G+  IV+ LLQ+ 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
           +P   +D D  G +PLH+AA  G  ++++ L   K    +A    G T LH     N+ E
Sbjct: 64  VP--VNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
               LLE   + +   AKD Y  T +H A A   ++ + +L
Sbjct: 121 IAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHIL 158

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 28  SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           S T LH A   GH +   E L Q      + D    S LHIA+  G   IVKALL     
Sbjct: 40  SRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK-GA 97
Query: 88  KCSDTDVDGRNPLHLAAM--RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEA 145
           + +  + +G  PLH AA   R  I V+     A PDA      +  T +H       L+ 
Sbjct: 98  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH---YEATAMHRAAAKGNLKM 154
Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
           +  LL     +   N +D  G T LHLA  ++++E  KLL +  A
Sbjct: 155 IHILLYYKAST---NIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 28  SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           S T LH A   GH +   E L Q      + D    S LHIA+  G   IVKALL     
Sbjct: 41  SRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK-GA 98
Query: 88  KCSDTDVDGRNPLHLAAM--RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEA 145
           + +  + +G  PLH AA   R  I V+     A PDA      +  T +H       L+ 
Sbjct: 99  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH---YEATAMHRAAAKGNLKM 155
Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
           +  LL     +   N +D  G T LHLA  ++++E  KLL +  A
Sbjct: 156 IHILLYYKAST---NIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           N L +TPLH+A +    + A+ +L       E  D R ++ LH+A ++G +  V  L Q 
Sbjct: 39  NNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQ- 96
Query: 85  IPDKCSD---------TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILH 135
               C+          T+ +G   LHLA++ G++ ++E L     D  +     G T LH
Sbjct: 97  ---SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 153
Query: 136 LCVKHNQLEALKFLLENMGD 155
           L V     + +  LL+   D
Sbjct: 154 LAVDLQNPDLVSLLLKCGAD 173

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEEL----------DSRKSSALHIASQKGY 74
           N L +TPLH+A           ++  +P IAE L          D R ++ LH+A ++G 
Sbjct: 42  NNLQQTPLHLA-----------VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC 90
Query: 75  VGIVKALLQVIPDKCSD---------TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASA 125
           +  V  L Q     C+          T+ +G   LHLA++ G++ ++E L     D  + 
Sbjct: 91  LASVGVLTQ----SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 126 RLIWGETILHLCVKHNQLEALKFLLENMGD 155
               G T LHL V     + +  LL+   D
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
           TD  G +PLHLAA  GH    E L RA   +  AR     T LH+         ++ LL+
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
           +  D   +NAKD   MT LH A      E ++LL    A +V+  +    TA+DI     
Sbjct: 89  HGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDI----S 140
Query: 212 RDTKDWDIGELLR 224
            D  + D+ E+L+
Sbjct: 141 IDNGNEDLAEILQ 153

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 8/180 (4%)
Query: 27  LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +S  PLH A +       +E+L  KP +  + D      LH +       I   LL  + 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 87  DKCSD--TDVDGRNPLHLAAMRGHIDVLEELARA--KPDAASARLIWGETILHLCVKHNQ 142
           +   D   D  G  P H+A   G+++V++ L     KPD        G T LHL V    
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKW 119
Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
            E  +FL+EN     +   KD +    LH A +   ++ I+LL       VN     G+T
Sbjct: 120 FEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 99  PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL 158
           PLH A M      ++EL  +KP     +   G   LH  V     E   FLL  M +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 159 LNAKDDYGMTILHLAVADKQIEAIK-LLTTSTAIEVNAVTANGFTA 203
            +  DD G T  H+A +   +E +K L       ++N +T  G T 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 8/180 (4%)
Query: 27  LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +S  PLH A +       +E+L  KP +  + D      LH +       I   LL  + 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 87  DKCSD--TDVDGRNPLHLAAMRGHIDVLEELARA--KPDAASARLIWGETILHLCVKHNQ 142
           +   D   D  G  P H+A   G+++V++ L     KPD        G T LHL V    
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKW 119
Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
            E  +FL+EN     +   KD +    LH A +   ++ I+LL       VN     G+T
Sbjct: 120 FEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 99  PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL 158
           PLH A M      ++EL  +KP     +   G   LH  V     E   FLL  M +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 159 LNAKDDYGMTILHLAVADKQIEAIK-LLTTSTAIEVNAVTANGFTA 203
            +  DD G T  H+A +   +E +K L       ++N +T  G T 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 8/180 (4%)
Query: 27  LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +S  PLH A +       +E+L  KP +  + D      LH +       I   LL  + 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 87  DKCSD--TDVDGRNPLHLAAMRGHIDVLEELARA--KPDAASARLIWGETILHLCVKHNQ 142
           +   D   D  G  P H+A   G+++V++ L     KPD        G T LHL V    
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKW 119
Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
            E  +FL+EN     +   KD +    LH A +   ++ I+LL       VN     G+T
Sbjct: 120 FEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 99  PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL 158
           PLH A M      ++EL  +KP     +   G   LH  V     E   FLL  M +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 159 LNAKDDYGMTILHLAVADKQIEAIK-LLTTSTAIEVNAVTANGFTA 203
            +  DD G T  H+A +   +E +K L       ++N +T  G T 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D DG  PLHLAA  GH++++E L +   D  +A   +G T LHL      LE ++ LL++
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLLKYGAD-VNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 153 MGDSELLNAKDDYGMTILHLAV 174
             D   +NA+D +G T   +++
Sbjct: 103 GAD---VNAQDKFGKTAFDISI 121

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
           D RKS+ LH+A+    V IV+ LLQ   D     D  G  PLH A   GH +V E L + 
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161
                +A  +W  T LH     N++E    LL +  D  L+N 
Sbjct: 114 GA-CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
           G  PLHLAAM GH++++E L +   D  +A    G T LHL    + LE ++ LL++  D
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 156 SELLNAKDDYGMTILHLAV 174
              +NA+D +G T   +++
Sbjct: 106 ---VNAQDKFGKTAFDISI 121

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
           +A   WG T LHL      LE ++ LL+N  D   +NA  + G T LHLA     +E ++
Sbjct: 41  NANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD---VNATGNTGRTPLHLAAWADHLEIVE 97
Query: 184 LLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR 225
           +L    A +VNA    G TA+DI      D  + D+ E+L++
Sbjct: 98  VLLKHGA-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 9/93 (9%)
Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
           Q + ++ L+ N  D   +NAKD+YG+T L+LA A   +E +++L  + A +VNAV A GF
Sbjct: 26  QDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVNAVDAIGF 81
Query: 202 TAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
           T   + A         +I E+L + GA ++AQD
Sbjct: 82  TPLHLAAFIGH----LEIAEVLLKHGADVNAQD 110

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 20/157 (12%)
Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRN-----PLHLAAMRGHIDVLEEL-- 115
           SS LH+A+  G   ++  LL+         +   RN     PLHLA  +GH  V++ L  
Sbjct: 87  SSPLHVAALHGRADLIPLLLK------HGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 116 ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA 175
           + AKP+      + G T L         E +  LL++ G S  +NA ++ G T LH AV 
Sbjct: 141 SNAKPNKKD---LSGNTPLIYACSGGHHELVALLLQH-GAS--INASNNKGNTALHEAVI 194
Query: 176 DKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
           +K +  ++LL    A  V  +     TA D   Q+ +
Sbjct: 195 EKHVFVVELLLLHGA-SVQVLNKRQRTAVDCAEQNSK 230

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
           G T LHL   ++ LE ++ LL++  D   +NA D+ G T LHLA     +E +++L    
Sbjct: 47  GNTPLHLAADYDHLEIVEVLLKHGAD---VNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR 225
           A +VNA    G TA+DI      D  + D+ E+L++
Sbjct: 104 A-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 69  ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
           A++ G V  VK L  V    C D +     PLH AA    + V+E L +   D   A+  
Sbjct: 17  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 75
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
            G   LH    +   E  + L+++     ++N  D +  T LH A A  + E  KLL   
Sbjct: 76  GGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229
            A +      +G T  D++        D DI +LLR   A+
Sbjct: 133 GA-DPTKKNRDGNTPLDLVKDG-----DTDIQDLLRGDAAL 167

>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1 Length = 273

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 80  ALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASAR------------- 126
           +L Q +    +D+   G+  LH+A  R +  ++  L     D  +A              
Sbjct: 85  SLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPG 144
Query: 127 LIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILH--LAVADKQIEAIKL 184
             +GE  L L    NQL  +KFLL+N      ++A+D  G T+LH  + VAD  ++  K 
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF 204
Query: 185 LTT 187
           +T+
Sbjct: 205 VTS 207

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 69  ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
           A++ G V  VK L  V    C D +     PLH AA    + V+E L +   D   A+  
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 73
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
            G   LH    +   E  + L+++     ++N  D +  T LH A A  + E  KLL   
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229
            A +      +G T  D++        D DI +LLR   A+
Sbjct: 131 GA-DPTKKNRDGNTPLDLVKDG-----DTDIQDLLRGDAAL 165

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 69  ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
           A++ G V  VK L  V    C D +     PLH AA    + V+E L +   D   A+  
Sbjct: 19  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 77
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
            G   LH    +   E  + L+++     ++N  D +  T LH A A  + E  KLL   
Sbjct: 78  GGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229
            A +      +G T  D++        D DI +LLR   A+
Sbjct: 135 GA-DPTKKNRDGNTPLDLVKDG-----DTDIQDLLRGDAAL 169

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 23/173 (13%)
Query: 30  TPLHVAALLG-----------HEDFAKEI----LRQKPRIAEELDSRKSSALHIASQKGY 74
           TPL +AA+ G           +ED   ++    L Q   +   +D    ++LH+A++   
Sbjct: 4   TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 75  VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETIL 134
               K LL    D  S  D  GR PLH A     + V + L R +    +AR+  G T L
Sbjct: 64  ADAAKRLLDAGADANS-QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPL 122
Query: 135 HLCVKHNQLEALKFLLENM--GDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
            L  +     A++ ++E++   D+++ NA D+ G T LH A A    EA+ +L
Sbjct: 123 ILAAR----LAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNIL 170

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
           G T LHL   ++ LE ++ LL+N  D   +NA D  G T LHL      +E +++L    
Sbjct: 47  GLTPLHLAAMNDHLEIVEVLLKNGAD---VNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR 225
           A +VNA    G TA+DI      D  + D+ E+L++
Sbjct: 104 A-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	434
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-29
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-29
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-27
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
2rfa_A	232	Transient receptor potential cation channel subfa	6e-26
2rfa_A	232	Transient receptor potential cation channel subfa	8e-14
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	6e-24
2pnn_A	273	Transient receptor potential cation channel subfa	4e-20
2pnn_A	273	Transient receptor potential cation channel subfa	2e-12
2pnn_A	273	Transient receptor potential cation channel subfa	1e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-13
2etb_A	256	Transient receptor potential cation channel subfam	2e-22
2etb_A	256	Transient receptor potential cation channel subfam	6e-22
2etb_A	256	Transient receptor potential cation channel subfam	6e-13
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-21
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-05

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  117 bits (297), Expect = 5e-31
 Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 12/183 (6%)

Query: 27  LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +S  PLH A +       +E+L  KP +  + D      LH +       I   LL  + 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 87  D--KCSDTDVDGRNPLHLAAMRGHIDVLEEL----ARAKPDAASARLIWGETILHLCVKH 140
           +       D  G  P H+A   G+++V++ L     +   +  +     G T LHL V  
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT---NQGVTCLHLAVGK 117

Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200
              E  +FL+EN      +  KD +    LH A +   ++ I+LL       VN     G
Sbjct: 118 KWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174

Query: 201 FTA 203
           +T 
Sbjct: 175 WTP 177

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  112 bits (282), Expect = 6e-29
 Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 18/184 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRI--AEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
             PLH +      +    +L +   +   +  D    +  HIA   G + +VK+L     
Sbjct: 37  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY---- 92

Query: 87  DKCSDTDV-----DGRNPLHLAAMRGHIDVLEELAR--AKPDAASARLIWGETILHLCVK 139
           D+    D+      G   LHLA  +   +V + L    A          + +  LH    
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD---KFNQIPLHRAAS 149

Query: 140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTAN 199
              L+ ++ L    G S + N +D  G T L  A+A+   +A  LL      E + V   
Sbjct: 150 VGSLKLIELLCGL-GKSAV-NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207

Query: 200 GFTA 203
           G  A
Sbjct: 208 GAKA 211

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 97.1 bits (243), Expect = 2e-23
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 13/161 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
            TP H+A  +G+ +  K +  +  +    ++ ++  + LH+A  K +  + + L++    
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEEL---ARAKPDAASARLIWGETILHLCVKHNQLE 144
                D   + PLH AA  G + ++E L    ++  +        G T L   +     +
Sbjct: 133 VRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD---KQGWTPLFHALAEGHGD 188

Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           A   L+E  G     +  D+ G     +A+     +  K  
Sbjct: 189 AAVLLVEKYGAE--YDLVDNKGAKAEDVAL---NEQVKKFF 224

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  120 bits (304), Expect = 2e-30
 Identities = 63/208 (30%), Positives = 93/208 (44%), Gaps = 16/208 (7%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +TPLH AA +GH +  K +L           +   + LHIA+++G+V  V ALL+    +
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +     G  PLH+AA  G + V E L    A P+AA      G T LH+ V HN L+ +
Sbjct: 140 -ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN---GLTPLHVAVHHNNLDIV 195

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
           K LL   G     ++    G T LH+A    Q+E  + L        NA +  G T   +
Sbjct: 196 KLLLPRGGS---PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHL 251

Query: 207 LAQSKRDTKDWDIGELLRRAGA-ISAQD 233
            AQ        ++  LL    A  +  +
Sbjct: 252 AAQEGHA----EMVALLLSKQANGNLGN 275

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  118 bits (298), Expect = 2e-29
 Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 11/177 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           ETPLH+AA  GH + AK +L+ K ++         + LH A++ G+  +VK LL+   + 
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +     G  PLH+AA  GH++ +  L    A     + +   G T LH+  K+ ++   
Sbjct: 107 -NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK---GFTPLHVAAKYGKVRVA 162

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
           + LLE        NA    G+T LH+AV    ++ +KLL        ++   NG+T 
Sbjct: 163 ELLLERDAH---PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTP 215

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  117 bits (297), Expect = 2e-29
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 11/177 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLHVA    + D  K +L +             + LHIA+++  V + ++LLQ     
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +   V G  PLHLAA  GH +++  L   +A  +  +     G T LHL  +   +   
Sbjct: 239 NA-ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS---GLTPLHLVAQEGHVPVA 294

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
             L+++      ++A    G T LH+A     I+ +K L    A +VNA T  G++ 
Sbjct: 295 DVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSP 347

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  117 bits (295), Expect = 5e-29
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 14/185 (7%)

Query: 24  VNCLSE---TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA 80
                E   TPLHVA+ +GH    K +L++        + +  + LH+A++ G+  + K 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKY 65

Query: 81  LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCV 138
           LLQ      +    D + PLH AA  GH ++++ L    A P+ A+     G T LH+  
Sbjct: 66  LLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAA 121

Query: 139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTA 198
           +   +E +  LLE              G T LH+A    ++   +LL    A   NA   
Sbjct: 122 REGHVETVLALLEKEAS---QACMTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGK 177

Query: 199 NGFTA 203
           NG T 
Sbjct: 178 NGLTP 182

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (290), Expect = 2e-28
 Identities = 48/179 (26%), Positives = 72/179 (40%), Gaps = 17/179 (9%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLHVAA  G    A+ +L +             + LH+A     + IVK LL     + 
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLL----PRG 202

Query: 90  SD---TDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLE 144
                   +G  PLH+AA +  ++V   L       +A S   + G T LHL  +    E
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES---VQGVTPLHLAAQEGHAE 259

Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
            +  LL    +    N  +  G+T LHL   +  +    +L       V+A T  G+T 
Sbjct: 260 MVALLLSKQAN---GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTP 314

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (276), Expect = 1e-26
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 12/182 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH+AA  GH +    +L ++       +    + LH+ +Q+G+V +   L++     
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
              T   G  PLH+A+  G+I +++ L   +A  +A +     G + LH   +    + +
Sbjct: 305 -DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT---KLGYSPLHQAAQQGHTDIV 360

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA--IEVNAVTANGFTAW 204
             LL+N       N     G T L +A     I    +L   T     V     +  +  
Sbjct: 361 TLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417

Query: 205 DI 206
           + 
Sbjct: 418 ET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.9 bits (250), Expect = 4e-23
 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH+ A  GH   A  +++    + +       + LH+AS  G + +VK LLQ   D 
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +     G +PLH AA +GH D++  L    A P+  S     G T L +  +   +   
Sbjct: 338 -NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS---SDGTTPLAIAKRLGYISVT 393

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLA------VADKQIEAIKL 184
             L     ++  +   D + M+             D+  E I  
Sbjct: 394 DVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEELISF 437

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  114 bits (287), Expect = 3e-30
 Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 10/175 (5%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             +H  A  G  D  KE LR+   +  + D R  + L  AS  G +  V+ LL+   D  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
                +  + L LA+  G+ D++  L       +        G T L   V+ N ++ ++
Sbjct: 64  I-LAKERESALSLASTGGYTDIVGLLLERDVDINIYD---WNGGTPLLYAVRGNHVKCVE 119

Query: 148 FLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
            LL    D   L  + D G T + LAVA    +  +++      ++         
Sbjct: 120 ALLARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIENHIL-KLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  101 bits (254), Expect = 1e-25
 Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 14/172 (8%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
           ++H  + +G +  +K  L+   +  +  D  G  PL  A+  G I+ +  L    A P  
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
            +      E+ L L       + +  LLE   D   +N  D  G T L  AV    ++ +
Sbjct: 65  LA---KERESALSLASTGGYTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCV 118

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
           + L    A ++     +G+T  D+            + +++      +   +
Sbjct: 119 EALLARGA-DLTTEADSGYTPMDLAVALGYR----KVQQVIENHILKLFQSN 165

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 74.0 bits (183), Expect = 8e-16
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
               +H  A +G +D L+E  R   +  +     G T L       ++E ++FLLE   D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
               +       + L LA      + + LL      ++N    NG T 
Sbjct: 62  ---PHILAKERESALSLASTGGYTDIVGLLLERDV-DINIYDWNGGTP 105

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           E+ L +A+  G+ D    +L +   I    D    + L  A +  +V  V+ALL    D 
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAA 123
            +     G  P+ LA   G+  V + +     K   +
Sbjct: 129 -TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  114 bits (289), Expect = 8e-30
 Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 16/197 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +TPLH+A +    + A+ +L       E  D R ++ LH+A ++G +  V  L Q     
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104

Query: 89  CSDTDV-----DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHN 141
              + +     +G   LHLA++ G++ ++E L    A  +A       G T LHL V   
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN--GRTALHLAVDLQ 162

Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
             + +  LL+   D   +N     G +   L          + L   T  E   +     
Sbjct: 163 NPDLVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL-ENLQMLPESE 218

Query: 202 TA--WDILAQSKRDTKD 216
               +D  ++    T+D
Sbjct: 219 DEESYDTESEFTEFTED 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  113 bits (286), Expect = 2e-29
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 18/209 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILR---QKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
           ++ LH+A +   +    E++R            ++ + + LH+A       I +ALL   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI-----WGETILHLCVKH 140
            D     D  G  PLHLA  +G +  +  L ++        ++      G T LHL   H
Sbjct: 69  CDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127

Query: 141 NQLEALKFLLENMGDSELLNAKDD-YGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTAN 199
             L  ++ L+    D   +NA++   G T LHLAV  +  + + LL    A +VN VT  
Sbjct: 128 GYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQ 183

Query: 200 GFTAWDILAQSKRDTKDWDIGELLRRAGA 228
           G++ + +            I + L +   
Sbjct: 184 GYSPYQLTWGR----PSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 93.4 bits (233), Expect = 5e-22
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 13/157 (8%)

Query: 56  EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD---TDVDGRNPLHLAAMRGHIDVL 112
           ++L     S LH+A       +   +++ +    +     +   + PLHLA +    ++ 
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 113 EEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE---NMGDSELLNAKDDYGM 167
           E L  A   P+        G T LHL  +   L ++  L +         +L A +  G 
Sbjct: 62  EALLGAGCDPELRD---FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 168 TILHLAVADKQIEAIKLLTTSTAIEVNAVT-ANGFTA 203
           T LHLA     +  ++LL +  A +VNA    NG TA
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGA-DVNAQEPCNGRTA 154

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (289), Expect = 8e-30
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 16/205 (7%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +TPLH+A +       + ++         LD    +A H+A +      ++ALL      
Sbjct: 47  QTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQL 143
             D    + DG   LH+A      + ++ L    A  DA   +   G + L   V++N L
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK--SGRSPLIHAVENNSL 163

Query: 144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
             ++ LL++  +   +NA+   G + LH A     +  ++ L  S A + +    +  T 
Sbjct: 164 SMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTP 219

Query: 204 WDILAQSKRDTKDWDIGELLRRAGA 228
             +    +      DI        A
Sbjct: 220 LMVARSRRVI----DILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  100 bits (252), Expect = 1e-24
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 16/184 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPR----IAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           +TPLH+A + G+      ++    +    + +  ++ + + LH+A       +V+ L+  
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTA 68

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL----ARAKPDAASARLIWGETILHLCVKH 140
                   D  G+   HLA        L  L    A    D   AR   G T LH+ V  
Sbjct: 69  GASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD-LEARNYDGLTALHVAVNT 126

Query: 141 NQLEALKFLLENMGDSELLNAKD-DYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTAN 199
              E ++ LLE   D   ++A D   G + L  AV +  +  ++LL    A  VNA   +
Sbjct: 127 ECQETVQLLLERGAD---IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA-NVNAQMYS 182

Query: 200 GFTA 203
           G +A
Sbjct: 183 GSSA 186

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 95.2 bits (238), Expect = 1e-22
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 11/157 (7%)

Query: 54  IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD---TDVDGRNPLHLAAMRGHID 110
           +A   D    + LHIA  +G +  V  L+ +      +    +   + PLHLA +     
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 111 VLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL-LNAKDDYGM 167
           V+  L  A A P A       G+T  HL  +H     L+ LL++     L L A++  G+
Sbjct: 61  VVRLLVTAGASPMALD---RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117

Query: 168 TILHLAVADKQIEAIKLLTTSTAIEVNAVTAN-GFTA 203
           T LH+AV  +  E ++LL    A +++AV    G + 
Sbjct: 118 TALHVAVNTECQETVQLLLERGA-DIDAVDIKSGRSP 153

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 158 LLNAKDDYGMTILHLAVADKQIEAIKLL---TTSTAIEVNAVTANGFTAWDILAQSKRDT 214
           +    D+ G T LH+AV    + A+  L         E++       T   +   +    
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP- 59

Query: 215 KDWDIGELLRRAGA-ISAQD 233
               +  LL  AGA   A D
Sbjct: 60  ---SVVRLLVTAGASPMALD 76

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  112 bits (283), Expect = 4e-29
 Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 14/208 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           ET LH+AA     D AK +L          D+   + LH A      G+ + L++     
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
                 DG  PL LAA      +LE+L  + A  +A       G++ LH     N ++A 
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD---DLGKSALHWAAAVNNVDAA 141

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
             LL+N  +    + +++   T L LA  +   E  K+L        +          DI
Sbjct: 142 VVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVL-LDHFANRDITDHMDRLPRDI 197

Query: 207 LAQSKRDTKDWDIGELLRRAGAISAQDL 234
             +        DI  LL     + +  L
Sbjct: 198 AQERMHH----DIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.2 bits (238), Expect = 7e-23
 Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 11/168 (6%)

Query: 39  GHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSD---TDVD 95
                  + + Q   +  + D    +ALH+A++       K LL    +  +D    D  
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL----EASADANIQDNM 57

Query: 96  GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
           GR PLH A       V + L R +     AR+  G T L L  +      L+ L+ +  D
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117

Query: 156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
              +NA DD G + LH A A   ++A  +L  + A   +       T 
Sbjct: 118 ---VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-NKDMQNNREETP 161

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  113 bits (285), Expect = 9e-29
 Identities = 48/215 (22%), Positives = 77/215 (35%), Gaps = 14/215 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  A      D  +++L     +  + +    + LH A Q     IV+ LL+   D 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
                 +G  P  LAA+ G + +L+      A  +       +G T       + +++AL
Sbjct: 66  VL-RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD---FYGFTAFMEAAVYGKVKAL 121

Query: 147 KFLLEN-------MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTAN 199
           KFL +            E        G T L  A     +E +K+L      +VNA    
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 200 GFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
           G  A      S  D+    I  LL   GA ++ + 
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (267), Expect = 3e-26
 Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 28/223 (12%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV---- 84
            TP  +AA+ G     K  L +   +  E D    +A   A+  G V  +K L +     
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 85  -IPDKCSDT----DVDGRNPLHLAAMRGHIDVLEEL---ARAKPDAASARLIWGETILHL 136
            +  K  +        G   L  AA +GH++VL+ L     A  +A       G   L  
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD---NMGRNALIH 188

Query: 137 CVKHNQLEAL----KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIE 192
            +  +    +      LL++  D   +N + + G T L LAV  K +  ++ L     IE
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245

Query: 193 VNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQDL 234
           +N   ++G TA  +  + K       I ELL + GA     DL
Sbjct: 246 INDTDSDGKTALLLAVELKLK----KIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.1 bits (191), Expect = 4e-16
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
            V+  + L  A     +D++++L     +        G T LH  V+ ++ + ++ LL +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
             D      +   G T   LA     ++ +KL  +  A +VN     GFTA
Sbjct: 62  GAD---PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA-DVNECDFYGFTA 108

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  110 bits (278), Expect = 2e-28
 Identities = 34/202 (16%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  +  A          E+  ++  I   +     +     + KG  G++ +        
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGLIPSN------Y 65

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            ++      NPLH AA RG++  L E    R   +        G T L+        + +
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK---AGSTALYWACHGGHKDIV 122

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
           + L         LN ++  G T LH A      + ++LL    A   +        A+D+
Sbjct: 123 EMLFTQPNIE--LNQQNKLGDTALHAAAWKGYADIVQLLLAKGA-RTDLRNIEKKLAFDM 179

Query: 207 LAQSKRDTKDWDIGELLRRAGA 228
              +        + +  +   A
Sbjct: 180 ATNAACA----SLLKKKQGTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  102 bits (256), Expect = 2e-25
 Identities = 28/183 (15%), Positives = 55/183 (30%), Gaps = 17/183 (9%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
           +  +S+T        G                 E      + LH A+++G +  ++  L 
Sbjct: 41  ITDMSDTNWWKGTSKGRTGLIPSN------YVAEQAESIDNPLHEAAKRGNLSWLRECLD 94

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL---ARAKPDAASARLIWGETILHLCVKH 140
                 +  D  G   L+ A   GH D++E L      + +  +     G+T LH     
Sbjct: 95  NRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN---KLGDTALHAAAWK 150

Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200
              + ++ LL         + ++        +A        +K     T        A  
Sbjct: 151 GYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKK-QGTDAVRTLSNAED 206

Query: 201 FTA 203
           +  
Sbjct: 207 YLD 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 90.8 bits (226), Expect = 3e-21
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           + PLH AA  G+  + +E L  +  +   LD   S+AL+ A   G+  IV+ L      +
Sbjct: 74  DNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE 132

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +  +  G   LH AA +G+ D+++ L    A+ D  +   I  +    +         L
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN---IEKKLAFDMATNAACASLL 189

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLA 173
           K               +         +
Sbjct: 190 KKKQGTDAV---RTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 30/136 (22%)

Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPD--------------AAS-------------ARL 127
            G+  +  A         +EL   + D                S              + 
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 128 IWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT 187
              +  LH   K   L  L+  L+N      +N  D  G T L+ A      + +++L T
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 188 STAIEVNAVTANGFTA 203
              IE+N     G TA
Sbjct: 128 QPNIELNQQNKLGDTA 143

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +T LH AA  G+ D  + +L +  R  +  +  K  A  +A+      ++K        +
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

Query: 89  CSDTDVDGRNPLHLAAMRGHID 110
            + ++ +       + +  H  
Sbjct: 200 -TLSNAEDYLDDEDSDLEHHHH 220

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  110 bits (277), Expect = 4e-28
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 14/205 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPL  AA   H +  K +++    + +  D+  S+ LH+A++KG+  +V+ LL      
Sbjct: 45  RTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +  D  G  P+  A    H+D+++ L    +  +            LH       ++  
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD---NEENICLHWAAFSGCVDIA 160

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
           + LL    D   L+A + +G + LH+A  + + + + L   S   +V      G T    
Sbjct: 161 EILLAAKCD---LHAVNIHGDSPLHIAARENRYDCVVLF-LSRDSDVTLKNKEGETPLQC 216

Query: 207 LAQSKRDTKDWDIGELLRRAGAISA 231
            + + +          + +A   SA
Sbjct: 217 ASLNSQV----WSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  108 bits (273), Expect = 1e-27
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 6/175 (3%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            +PLH AA  GH D    +++    I +     + + L  A++  ++  VK L++     
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
               D +G   LHLAA +GH +V++ L        + +   G T +    ++  ++ +K 
Sbjct: 71  -DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129

Query: 149 LLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
           LL    D   +N +D+     LH A     ++  ++L  +   +++AV  +G + 
Sbjct: 130 LLSKGSD---INIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNIHGDSP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 94.4 bits (236), Expect = 2e-22
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)

Query: 56  EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
           +     K S LH A++ G+V I   L+Q   +       D R PL  AA   H++ ++ L
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 116 --ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173
             A A  D        G T LHL  K    E +++LL N G  + +N +DD G T +  A
Sbjct: 64  IKAGALVDPKD---AEGSTCLHLAAKKGHYEVVQYLLSN-GQMD-VNCQDDGGWTPMIWA 118

Query: 174 VADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
              K ++ +KLL +  + ++N         
Sbjct: 119 TEYKHVDLVKLLLSKGS-DINIRDNEENIC 147

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  106 bits (268), Expect = 2e-27
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 9/158 (5%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             +      G+    +  L        + D    S LH A ++G   +V+ L+       
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI- 65

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
           +  +     PLHLAA  GH D++++L   +A  +A +     G   LH      Q +  +
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN---EHGNVPLHYACFWGQDQVAE 122

Query: 148 FLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
            L+ N      ++  + YG   +  A A  +    +  
Sbjct: 123 DLVANGAL---VSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.3 bits (207), Expect = 6e-19
 Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 7/142 (4%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            +PLH A   G     + ++ +  RI   ++    + LH+A+  G+  IV+ LLQ   D 
Sbjct: 40  FSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +  +  G  PLH A   G   V E+L    A     +    +GE  +       +    
Sbjct: 99  -NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN---KYGEMPVDKAKAPLRELLR 154

Query: 147 KFLLENMGDSELLNAKDDYGMT 168
           +   +   +   +  KD +   
Sbjct: 155 ERAEKMGQNLNRIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 71.7 bits (177), Expect = 5e-15
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
             +  + +      G+   +        +  +     G + LH   +  +   ++ L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
                 +N  +    T LHLA +    + ++ L    A ++NAV  +G   
Sbjct: 62  GAR---INVMNRGDDTPLHLAASHGHRDIVQKLLQYKA-DINAVNEHGNVP 108

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 8/80 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
             PLH A   G +  A++++     +    +      +  A       + +   +     
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK----- 159

Query: 89  CSDTDVDGRNPLHLAAMRGH 108
               +++ R P      +G 
Sbjct: 160 -MGQNLN-RIPYKDTFWKGT 177

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (274), Expect = 3e-27
 Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 18/202 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            +PLH A L GH    K +L+   ++   + +   + L  A   G    V  LLQ     
Sbjct: 93  VSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
               + D  +P+H AA RGH++ +  L       D   +      T L+L  ++ Q   +
Sbjct: 152 --QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH---LGTPLYLACENQQRACV 206

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
           K LLE+  D   +N +     + LH  V     E   LL    A +  A  A G    ++
Sbjct: 207 KKLLESGAD---VN-QGKGQDSPLHAVVRTASEELACLLMDFGA-DTQAKNAEGKRPVEL 261

Query: 207 LAQSKRDTKDWDIGELLRRAGA 228
           +       +       L R GA
Sbjct: 262 VPPESPLAQ-----LFLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  106 bits (267), Expect = 2e-26
 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 19/180 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            +P+H AA+ GH+   + ++ Q   +   + +   S LH A   G++  VK LL      
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILL----KH 114

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQL 143
            +       D   PL  A + G  D +  L    A     S       + +H   +   +
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD----LASPIHEAARRGHV 170

Query: 144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
           E +  L+   G+   ++ K  +  T L+LA  ++Q   +K L  S A +VN       + 
Sbjct: 171 ECVNSLIAYGGN---IDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQ-GKGQDSP 225

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 94.1 bits (235), Expect = 6e-22
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
            P       G        L   P + + +     S +H A+  G+   ++ L+       
Sbjct: 35  KPAGPRDFPGIR------LLSNPLMGDAVSDW--SPMHEAAIHGHQLSLRNLISQGWAV- 85

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
           +    D  +PLH A + GH+  ++ L    A+ +  +       T L         + + 
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT---ADWHTPLFNACVSGSWDCVN 142

Query: 148 FLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
            LL++      +  + D   + +H A     +E +  L       ++   ++  T 
Sbjct: 143 LLLQHGAS---VQPESD-LASPIHEAARRGHVECVNSLIAYGG-NIDHKISHLGTP 193

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 22/176 (12%)

Query: 34  VAALLGHEDFAKEILRQKPRIAEELDSRK----SSALHIASQKGYVGIVKALLQVIPDKC 89
           + +   H   +  ++ +   +A     +     S         G   +   L+       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMG------ 54

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
               V   +P+H AA+ GH   L  L       +  +       + LH       L  +K
Sbjct: 55  --DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT---ADHVSPLHEACLGGHLSCVK 109

Query: 148 FLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
            LL++      +N       T L  A      + + LL    A  V    ++  + 
Sbjct: 110 ILLKHGAQ---VNGVTADWHTPLFNACVSGSWDCVNLLLQHGA-SVQP-ESDLASP 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  105 bits (265), Expect = 3e-27
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 10/159 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              +H  A  G   +    + Q+  I    D    + L  A+  G + +V+ LLQ   D 
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
                    + L LA  +G+ D+++ L       +        G T L   V  N ++ +
Sbjct: 63  QL-LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD---WNGGTPLLYAVHGNHVKCV 118

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           K LLE+  D      + D G   + LAVA       +++
Sbjct: 119 KMLLESGAD---PTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 97.8 bits (245), Expect = 2e-24
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 15/172 (8%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
           ++H  + +G +  +   ++      + TD +G  PL  AA  G I V+E L    A P  
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
                   E+ L L       + +K LL+   D   +N  D  G T L  AV    ++ +
Sbjct: 65  LG---KGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCV 118

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
           K+L  S A +    T +G+ + D+            + +++      +    
Sbjct: 119 KMLLESGA-DPTIETDSGYNSMDLAVALGYR----SVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 84.4 bits (210), Expect = 2e-19
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPL  AA  G     + +L+      + L   + SAL +A  KGY  IVK LL    D  
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
              D +G  PL  A    H+  ++ L  + A P   +     G   + L V        +
Sbjct: 97  E-YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD---SGYNSMDLAVALGYRSVQQ 152

Query: 148 FLLENMGDSELLNAKDD 164
            +  ++     L     
Sbjct: 153 VIESHLLK---LLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 95  DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
                +H  A +G +  L          +        G T L     H Q+  ++FLL+N
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTD---EEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
             D            + L LA +    + +K+L      +VN    NG T 
Sbjct: 59  GAD---PQLLGKGRESALSLACSKGYTDIVKMLLDCGV-DVNEYDWNGGTP 105

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  106 bits (267), Expect = 1e-26
 Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 18/188 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILRQK--PRIAEEL-----------DSRKSSALHIASQKGYV 75
            TPL +A+  G          ++  P +  +            D    +ALH+A++    
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70

Query: 76  GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILH 135
              K LL+   D  +  D  GR PLH A       V + L R +     AR+  G T L 
Sbjct: 71  DAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129

Query: 136 LCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNA 195
           L  +      L+ L+ +  D   +NA DD G + LH A A   ++A  +L        + 
Sbjct: 130 LAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVL-LKNGANKDM 185

Query: 196 VTANGFTA 203
                 T 
Sbjct: 186 QNNREETP 193

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  100 bits (251), Expect = 2e-24
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 9/159 (5%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH A     +   + ++R +    +      ++ L +A++    G+++ L+    D 
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +  D  G++ LH AA   ++D    L    A  D  +      ET L L  +    E  
Sbjct: 151 -NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN---NREETPLFLAAREGSYETA 206

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           K LL++  +    +  D        +A      + ++LL
Sbjct: 207 KVLLDHFAN---RDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.9 bits (193), Expect = 1e-16
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPL +AA L  E   ++++     +   +D    SALH A+    V     LL+   +K
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
               +     PL LAA  G  +  + L    A  D              +  +    + +
Sbjct: 184 -DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD---HMDRLPRDIAQERMHHDIV 239

Query: 147 KFLLENMGD 155
           + L      
Sbjct: 240 RLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 16/124 (12%)

Query: 93  DVDGRNPLHLAAMRG-------------HIDVLEELARAKPDAASARLIWGETILHLCVK 139
             DG  PL +A+  G                V+ +         +     GET LHL  +
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTAN 199
           +++ +A K LLE   D    N +D+ G T LH AV+       ++L  + A +++A   +
Sbjct: 67  YSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 200 GFTA 203
           G T 
Sbjct: 124 GTTP 127

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  107 bits (270), Expect = 4e-26
 Identities = 30/192 (15%), Positives = 67/192 (34%), Gaps = 18/192 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIA-------EELDSRKSSALHIASQKGYVGIVKAL 81
            T LH  A     + +++++  + +           +D  +++ L +A       +V  L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

Query: 82  LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAAS--ARLIWGETILHLCVK 139
           ++   D  +  +   R+ LH AA      ++  +  +             G T L +   
Sbjct: 186 MKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244

Query: 140 HNQLEAL---KFLLE-----NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAI 191
           +   + +   K L+E     +   +   +++   G T LH A     +  +K L      
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304

Query: 192 EVNAVTANGFTA 203
             +    +G T 
Sbjct: 305 NKDKQDEDGKTP 316

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  106 bits (268), Expect = 7e-26
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 22/213 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPL +A L         +++         +  + SALH A+     G++  +L     K
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225

Query: 89  CS--DTDVDGRNPLHLAAMRGHIDVLE----------ELARAKPDAASARLIWGETILHL 136
               + D +G   L + A     D +           ++         +    G T LH 
Sbjct: 226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

Query: 137 CVKHNQLEALKFLLENMG-DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNA 195
             + + +  +K+L+   G +    + +D+ G T + LA  + +IE +  L    A  V A
Sbjct: 286 AAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-SVEA 341

Query: 196 VTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
           V A   TA  +   +       +I ++  R   
Sbjct: 342 VDATDHTARQLAQANNHH----NIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  103 bits (259), Expect = 1e-24
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 23/212 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
             P       G++    +      +I  E +      LH  +  G   I + + +   + 
Sbjct: 62  LYPNPQGYGNGNDFLG-DFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNI 119

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELAR----------AKPDAASARLIWGETILHLCV 138
                   R  LH  A     +  E+L            A  +A         T L L V
Sbjct: 120 --IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD---CDENTPLMLAV 174

Query: 139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAI--EVNAV 196
              +   + +L++   D       +    + LH A A++    +  +  ST +  ++  +
Sbjct: 175 LARRRRLVAYLMKAGAD---PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 231

Query: 197 TANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
             NG TA  ++             +LL   GA
Sbjct: 232 DRNGMTAL-MIVAHNEGRDQVASAKLLVEKGA 262

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 25/194 (12%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              LH  A  G     + I R+   I +       + LH  +        + L+     +
Sbjct: 95  PIKLHTEAA-GSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKE 151

Query: 89  CSD-------TDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVK 139
           C          D D   PL LA +     ++  L  A A P   +       + LH    
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN---KSERSALHQAAA 208

Query: 140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADK---QIEAIKLL-------TTST 189
           +     + ++L +      +   D  GMT L +   ++   Q+ + KLL           
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268

Query: 190 AIEVNAVTANGFTA 203
           A   ++    G TA
Sbjct: 269 AARKDSEKYKGRTA 282

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 20/181 (11%)

Query: 28  SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           S+  L  A+  G+    +           EL              G   +       +  
Sbjct: 37  SQHSLLEASYDGYIKRQRN----------ELQHYSLYPNPQGYGNGNDFLGDFNHTNLQI 86

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALK 147
             ++ + +    LH  A  G   + E + R   +    R     T+LH    ++  E  +
Sbjct: 87  P-TEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPR--HNRTVLHWIASNSSAEKSE 142

Query: 148 FLLENMGDSEL-----LNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
            L+ +     +     +NA D    T L LAV  ++   +  L  + A +      +  +
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA-DPTIYNKSERS 201

Query: 203 A 203
           A
Sbjct: 202 A 202

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH AA + +    K ++ +K    ++ D    + + +A+Q+G + +V  L+Q     
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
               D        LA    H ++++   R +P+
Sbjct: 340 -EAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 11/109 (10%), Positives = 26/109 (23%), Gaps = 16/109 (14%)

Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
             ++ L  A+  G+I       +           +          +       F   N+ 
Sbjct: 36  SSQHSLLEASYDGYIKRQRNELQ----------HYSLYPNPQGYGNGNDFLGDFNHTNLQ 85

Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
                   +      LH   A       + + T  ++ +     +  T 
Sbjct: 86  I---PTEPEPESPIKLHTE-AAGSYAITEPI-TRESVNIID-PRHNRTV 128

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +TP+ +AA  G  +    +++Q   + E +D+   +A  +A    +  IV    +  P++
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  104 bits (261), Expect = 6e-26
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 16/204 (7%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH AA+    D  K  + +   + +      S+ LH A+++G++ +V  L++   D 
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHL-CVKHNQLEA 145
            S  D +G + +HLAA  GH  ++  L       D        G T L     + + ++ 
Sbjct: 103 -SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN---GMTPLMWAAYRTHSVDP 158

Query: 146 LKFLLENMGDSELLNAKDDY-GMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAW 204
            + LL        +N  D Y   T LH AV       I LL       V+A    G +A 
Sbjct: 159 TRLLLTFNVS---VNLGDKYHKNTALHWAVLAGNTTVISLL-LEAGANVDAQNIKGESAL 214

Query: 205 DILAQSKRDTKDWDIGELLRRAGA 228
           D+  Q K       +   L+ A  
Sbjct: 215 DLAKQRKNV----WMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 99.8 bits (250), Expect = 3e-24
 Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 12/179 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              +  A   G  +  +E++     +  + D    + LH A+    + +VK  +      
Sbjct: 10  TWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
                     PLH A  +GH+ ++ +L    A P         G + +HL  +      +
Sbjct: 69  DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE---GCSCIHLAAQFGHTSIV 125

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADK-QIEAIKLLTTSTAIEVNAVT-ANGFTA 203
            +L+    D   ++  D  GMT L  A      ++  +LL T     VN     +  TA
Sbjct: 126 AYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV-SVNLGDKYHKNTA 180

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 92.9 bits (232), Expect = 8e-22
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 13/181 (7%)

Query: 56  EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
             +D   +  +  A+Q G     + L++   D     D +    LH AA+   ID+++  
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 116 --ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173
               A  D          T LH   +   L  +  L++   D    +  D  G + +HLA
Sbjct: 62  ISKGAIVDQLGG--DLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGCSCIHLA 116

Query: 174 VADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQ 232
                   +  L  +   +V+ +  NG T   + A  +  +   D   LL      ++  
Sbjct: 117 AQFGHTSIVAYL-IAKGQDVDMMDQNGMTPL-MWAAYRTHSV--DPTRLLLTFNVSVNLG 172

Query: 233 D 233
           D
Sbjct: 173 D 173

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH A L G+      +L     + +  + +  SAL +A Q+  V ++  L +    K
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236

Query: 89  CSD 91
             D
Sbjct: 237 GYD 239

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 69.6 bits (171), Expect = 8e-14
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 96  GRNPLHLAAMRGHIDVLEEL---ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
             +PL LAA    +  L +L      +     A    GET LH+   ++ LEA   L+E 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA---MGETALHIAALYDNLEAAMVLMEA 59

Query: 153 MGD--SELLNAKDDYGMTILHLAVADKQIEAIKLL 185
             +   E + ++   G T LH+AV ++ +  ++ L
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 128 IWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT 187
           +  E+ L L  K N ++AL  LL+  G    ++ +   G T LH+A     +EA  +L  
Sbjct: 1   MIWESPLLLAAKENDVQALSKLLKFEGCE--VHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 188 STA----IEVNAVTANGFTA 203
           +        + +    G TA
Sbjct: 59  AAPELVFEPMTSELYEGQTA 78

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  101 bits (254), Expect = 1e-25
 Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 10/159 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  L  AA  G  +  K++   +     +++ R+S+ LH A+    V +V+ LLQ   D 
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +  D  G  PLH A   GH +V E L    A  + A    +W  T LH      + E  
Sbjct: 69  HA-KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD---LWKFTPLHEAAAKGKYEIC 124

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           K LL++  D      K+  G T L L   D   +   LL
Sbjct: 125 KLLLQHGAD---PTKKNRDGNTPLDLV-KDGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 94.0 bits (235), Expect = 4e-23
 Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 14/173 (8%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--A 116
           +S     L  A++ G V  VK L  V    C D +     PLH AA    + V+E L   
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 117 RAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD 176
            A   A       G   LH    +   E  + L+++      +N  D +  T LH A A 
Sbjct: 65  GADVHAKD---KGGLVPLHNACSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAK 118

Query: 177 KQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229
            + E  KLL    A +      +G T  D++     D +     +LLR   A+
Sbjct: 119 GKYEICKLLLQHGA-DPTKKNRDGNTPLDLVKDGDTDIQ-----DLLRGDAAL 165

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.0 bits (183), Expect = 6e-16
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 91  DTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLL 150
             + +    L  AA  G ++ +++L   +            T LH    +N++  +++LL
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 151 ENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
           ++  D   ++AKD  G+  LH A +    E  +LL    A  VN      FT 
Sbjct: 63  QHGAD---VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTP 111

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  101 bits (254), Expect = 1e-25
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 10/158 (6%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             L  AA  G +D  + ++     +    D+   + LH+A+  G++ IV+ LL+   D  
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
           +  D  G  PL LAA+ GH++++E L    A  +A     + G T LHL      LE ++
Sbjct: 75  A-VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND---MEGHTPLHLAAMFGHLEIVE 130

Query: 148 FLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
            LL+N  D   +NA+D +G T   +++ +   +  ++L
Sbjct: 131 VLLKNGAD---VNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.3 bits (223), Expect = 2e-21
 Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 10/141 (7%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
            L  A++ G    V+ L+    D  +  D  G  PLHLAA  GH++++E L    A  +A
Sbjct: 17  KLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
                  G T L L      LE ++ LL+N  D   +NA D  G T LHLA     +E +
Sbjct: 76  VD---HAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIV 129

Query: 183 KLLTTSTAIEVNAVTANGFTA 203
           ++L  + A +VNA    G TA
Sbjct: 130 EVLLKNGA-DVNAQDKFGKTA 149

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.9 bits (175), Expect = 8e-15
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 95  DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D    L  AA  G  D +  L    A  +A       G T LHL   +  LE ++ LL+N
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAED---ASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
             D   +NA D  GMT L LA     +E +++L  + A +VNA    G T 
Sbjct: 70  GAD---VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA-DVNANDMEGHTP 116

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 64.3 bits (158), Expect = 2e-12
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPL +AAL GH +  + +L+    +    D    + LH+A+  G++ IV+ LL+   D 
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL 115
            +  D  G+    ++   G+ D+ E L
Sbjct: 140 -NAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.6 bits (112), Expect = 3e-06
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
            TPLH+AA+ GH +  + +L+    +    D    +A  I+   G   + + L ++
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  103 bits (258), Expect = 1e-25
 Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 16/202 (7%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  L             E +    R+  + +    + L  +S +G   +V+ ++  + D 
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            S  + +G   LH A   GH ++++ L       +AA      G T LH     N ++  
Sbjct: 64  -SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD---SDGWTPLHCAASCNNVQVC 119

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
           KFL+E+      +   D          + +   +  + L      ++  +      A   
Sbjct: 120 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE-KMGIMNKGVIYALWD 178

Query: 207 LAQSKRDTKDWDIGELLRRAGA 228
                 D       EL  + G 
Sbjct: 179 YEPQNDD-------ELPMKEGD 193

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 14/115 (12%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEEL----ARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
           ++ G+  L             E      R K +           +L       + + ++ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL------PLALLLDSSLEGEFDLVQR 55

Query: 149 LLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
           ++  + D    +  +D G+T LH AV     E +K L       VNA  ++G+T 
Sbjct: 56  IIYEVDD---PSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTP 106

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  105 bits (265), Expect = 2e-25
 Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 26/181 (14%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH+A   G  D AK +                  +H+A       +V AL+      
Sbjct: 54  CTALHLACKFGCVDTAKYLASVG---EVHSLWHGQKPIHLAVMANKTDLVVALV------ 104

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVK--HNQLEAL 146
                  G+ P  L       +V E  +  K          G+T LH CV      LE +
Sbjct: 105 -EGAKERGQMPESLLNECDEREVNEIGSHVK-H------CKGQTALHWCVGLGPEYLEMI 156

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL----TTSTAIEVNAVTANGFT 202
           K L++         AKD    T L  A+  +  EA+ L+     + +++ ++     G +
Sbjct: 157 KILVQLGAS---PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213

Query: 203 A 203
            
Sbjct: 214 H 214

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  104 bits (263), Expect = 4e-25
 Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 24/181 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           + P+H+A +    D    ++            R      + ++     + +    V    
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDEREVNEIGSHV---- 133

Query: 89  CSDTDVDGRNPLHLAAMRG--HIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLE 144
                  G+  LH     G  ++++++ L    A P A        ET L   ++    E
Sbjct: 134 ---KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD---KADETPLMRAMEFRNRE 187

Query: 145 ALKFLLENMGDSE--LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
           AL  +++ +       L+  +  G + LH A+     +           +VN        
Sbjct: 188 ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI-DVNMEDNEHTV 246

Query: 203 A 203
            
Sbjct: 247 P 247

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  103 bits (259), Expect = 1e-24
 Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 28/224 (12%)

Query: 29  ETPLHVAALLG--HEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +T LH    LG  + +  K +++         D    + L  A +      +  ++  +P
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVP 197

Query: 87  DKCS----DTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKH 140
            K S      +  G + LH A +    DV           +            L+L V+ 
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED---NEHTVPLYLSVRA 254

Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTI----------LHLAVADKQIEAIKLLTTSTA 190
             +   K LL+      +       G T+          +  A    + E ++LL     
Sbjct: 255 AMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314

Query: 191 IEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
            EV      G        +         +  +     A +  + 
Sbjct: 315 -EVVRSLNTGAGGAVKRKKKAAP----AVKRMKLAPSAPVRTRS 353

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.8 bits (247), Expect = 4e-23
 Identities = 39/177 (22%), Positives = 62/177 (35%), Gaps = 23/177 (12%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              +HVAA  G  D  + ++          +    +ALH+A + G V   K L  V    
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH 79

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
              +   G+ P+HLA M    D++  L     +        G+    L  + ++ E  + 
Sbjct: 80  ---SLWHGQKPIHLAVMANKTDLVVALVEGAKER-------GQMPESLLNECDEREVNEI 129

Query: 149 LLENMGDSELLNAKDDYGMTILHLAVA--DKQIEAIKLLTTSTAIEVNAVTANGFTA 203
                      + K   G T LH  V    + +E IK+L    A    A      T 
Sbjct: 130 ---------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA-SPTAKDKADETP 176

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 94.6 bits (236), Expect = 1e-21
 Identities = 23/159 (14%), Positives = 45/159 (28%), Gaps = 21/159 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            + LH A L+  ED A   +     +    D+  +  L+++ +   V + K LLQ     
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270

Query: 89  CSD------------TDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETIL 134
                            V   + +  AA     +VL+ L     +   +      G    
Sbjct: 271 LIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSL---NTGAGGA 327

Query: 135 HLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173
               K       +  L        +  +         ++
Sbjct: 328 VKRKKKAAPAVKRMKLAPSAP---VRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 33/165 (20%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
           +D +    +H+AA +G  D +  L      P   +     G T LHL  K   ++  K+L
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF---GCTALHLACKFGCVDTAKYL 72

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA------------------- 190
               G+         +G   +HLAV   + + +  L                        
Sbjct: 73  ASV-GE----VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN 127

Query: 191 -IEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
            I  +     G TA         +    ++ ++L + GA  +A+D
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYL--EMIKILVQLGASPTAKD 170

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 160 NAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
              DD  M  +H+A    Q + ++ L   T +        G TA
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRL-IETGVSPTIQNRFGCTA 56

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 99.8 bits (250), Expect = 3e-25
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 11/159 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  AA  G +D  + ++          D   +S LH+A+Q G+    + LL+    +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +      R PLH+AA  GH +++E L    A  +A     +   T LH   +HN  E +
Sbjct: 61  DA-RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD---MLKMTALHWATEHNHQEVV 116

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           + L++   D   ++ +  +  T   +++ +   +  ++L
Sbjct: 117 ELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 88.6 bits (221), Expect = 3e-21
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
            L  A++ G    V+ L+         TD  G +PLHLAA  GH    E L  A    DA
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
            +       T LH+         ++ LL++  D   +NAKD   MT LH A      E +
Sbjct: 63  RT---KVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVV 116

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLR 224
           +LL    A +V+  +    TA+DI   +  +    D+ E+L+
Sbjct: 117 ELLIKYGA-DVHTQSKFCKTAFDISIDNGNE----DLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 68.6 bits (169), Expect = 4e-14
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
           D    L  AA  G  D +  L        +     G + LHL  ++      + LL    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDW--LGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
                +A+     T LH+A ++     +++L    A +VNA      TA
Sbjct: 59  S---RDARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKDMLKMTA 103

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (257), Expect = 6e-25
 Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 13/177 (7%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            +  + A    +      +L         L++     LH A+      IVK LL    D 
Sbjct: 32  HSASYYAIADNNVRLVCTLLNAGALK-NLLENE--FPLHQAATLEDTKIVKILLFSGLDD 88

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            S  D  G   L+ A   G++  ++       +           +T  +  V  N +  +
Sbjct: 89  -SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT--GWKTSFYHAVMLNDVSIV 145

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
            + L  +             ++ +H+ + +  ++ + LL        N   +  F  
Sbjct: 146 SYFLSEIPS----TFDLAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIP 197

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  100 bits (251), Expect = 4e-24
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 7/158 (4%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           E PLH AA L      K +L        + D + ++AL+ A   G +  VK  ++     
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
                   +   + A M   + ++       P           + +H+ +K+  ++ +  
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA--ILLSCIHITIKNGHVDMMIL 179

Query: 149 LLENMGDSELLNAKDDYGMT-ILHLAVADKQIEAIKLL 185
           LL+ M      N  +       + LA+ +K IE ++ L
Sbjct: 180 LLDYMTS---TNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 14/148 (9%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--A 116
           D    SA + A     V +V  LL     K     ++   PLH AA      +++ L  +
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALK---NLLENEFPLHQAATLEDTKIVKILLFS 84

Query: 117 RAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYG-MTILHLAVA 175
                        G T L+  V    ++ +K  ++       L      G  T  + AV 
Sbjct: 85  GLDDSQFD---DKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVM 138

Query: 176 DKQIEAIKLLTTSTAIEVNAVTANGFTA 203
              +  +    +          A   + 
Sbjct: 139 LNDVSIVSYFLSEIPS--TFDLAILLSC 164

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 21/155 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +T  + A +L         L + P   +   +   S +HI  + G+V ++  LL    D 
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLL----DY 183

Query: 89  CSD---TDVDGRNP-LHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
            +     +     P + LA     I++L+ L +   +          +     V  +  E
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN--------IYSANLENVLLDDAE 235

Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQI 179
             K ++E   +     +        +       +I
Sbjct: 236 IAKMIIEKHVE---YKSDSYTKDLDIVKNNKLDEI 267

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 13/130 (10%), Positives = 42/130 (32%), Gaps = 17/130 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            + +H+    GH D    +L                 + +A     + +++AL +     
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY---- 217

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQL--- 143
               D++  +      +    ++ + +     +  + S      +  +    K +++   
Sbjct: 218 ----DINIYSANLENVLLDDAEIAKMIIEKHVEYKSDS---YTKDLDIVKNNKLDEIISK 270

Query: 144 -EALKFLLEN 152
            + L+ +  N
Sbjct: 271 NKELRLMYVN 280

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  102 bits (257), Expect = 7e-25
 Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 13/174 (7%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           T LH A +  + D  K ++     I  + D+     LH A+  GY+ I + L+       
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV- 132

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
              + +G  PL +A      ++L+          + + +  E       +    +A ++L
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNE-------VNRQGVDIEAARKEEERIMLRDARQWL 185

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
                +          G T LH+A A    E +KLL  +   +VN    +G+T 
Sbjct: 186 NSGHIN---DVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTP 235

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  101 bits (255), Expect = 2e-24
 Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 22/208 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
             PLH AA  G+ D A+ ++ Q   +   ++S   + L IA ++    +++  +      
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEV------ 159

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +   VD              D  + L          +     G T LH+       E L
Sbjct: 160 -NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA---KSGGTALHVAAAKGYTEVL 215

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
           K L++   D   +N KD  G T LH A    + EA ++L  +   ++ AV   G TA+D+
Sbjct: 216 KLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQTAFDV 271

Query: 207 LAQSKRDTKDWDIGELLRRAGA-ISAQD 233
             +         + EL ++     S + 
Sbjct: 272 ADEDILG----YLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.0 bits (245), Expect = 4e-23
 Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 27/209 (12%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ--VIPD 87
               +   +G E   +  + ++ +   + D    +    A   G    V  LL+     +
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKVKFDD--GAVFLAACSSGDTEEVLRLLERGADIN 67

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEA 145
                +VDG   LH A +  ++D+++ L    A  +        G   LH       L+ 
Sbjct: 68  YA---NVDGLTALHQACIDDNVDMVKFLVENGANINQPD---NEGWIPLHAAASCGYLDI 121

Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD 205
            ++L+        + A +  G T L +A  +   E ++         VN    +   A  
Sbjct: 122 AEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEELLQNE-------VNRQGVDIEAA-R 170

Query: 206 ILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
                +   +  D  + L           
Sbjct: 171 KEE-ERIMLR--DARQWLNSGHINDVRHA 196

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 88.7 bits (221), Expect = 5e-20
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 11/153 (7%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--A 116
           D+++     +    G    ++  +            D       A   G  + +  L   
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 117 RAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD 176
            A  + A+   + G T LH     + ++ +KFL+EN  +   +N  D+ G   LH A + 
Sbjct: 63  GADINYAN---VDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHAAASC 116

Query: 177 KQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ 209
             ++  + L +  A  V AV + G T  DI  +
Sbjct: 117 GYLDIAEYLISQGA-HVGAVNSEGDTPLDIAEE 148

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.8 bits (177), Expect = 3e-14
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 10/138 (7%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           E        +   D  + +                +ALH+A+ KGY  ++K L+Q   D 
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELAR--AKPDAASARLIWGETILHLCVKHNQLEAL 146
            +  D DG  PLH AA  G  +    L       +A +     G+T   +  +   L  L
Sbjct: 226 -NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN---KVGQTAFDVADEDI-LGYL 280

Query: 147 KFLLENMGDSELLNAKDD 164
           + L +      L + K +
Sbjct: 281 EELQKKQNL--LHSEKRE 296

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  103 bits (259), Expect = 1e-24
 Identities = 55/228 (24%), Positives = 86/228 (37%), Gaps = 31/228 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  L  AA  G+E+    +L          D RKS+ LH+A+    V IV+ LLQ   D 
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +  D  G  PLH A   GH +V E L    A  +A     +W  T LH     N++E  
Sbjct: 85  HA-KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD---LWQFTPLHEAASKNRVEVC 140

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAI--------------- 191
             LL +  D       + +G + + +A   +  E +       ++               
Sbjct: 141 SLLLSHGAD---PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKT 197

Query: 192 -----EVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
                       +  TA    A +    K   + ELL R GA ++ ++
Sbjct: 198 LALEIINFKQPQSHETA-LHCAVASLHPKRKQVAELLLRKGANVNEKN 244

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  101 bits (253), Expect = 6e-24
 Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 22/178 (12%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
             PLH A   GH +  + +L+    +   +D  + + LH A+ K  V +   LL    D 
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
            +  +  G++ + +A      + L                 G ++L    + + L  +K 
Sbjct: 151 -TLVNCHGKSAVDMAPTPELRERLT------------YEFKGHSLLQAAREAD-LAKVKK 196

Query: 149 LLENMGDSELLNAKDDYGMTILHLAVA---DKQIEAIKLLTTSTAIEVNAVTANGFTA 203
            L           +     T LH AVA    K+ +  +LL    A  VN    +  T 
Sbjct: 197 TLALEII---NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA-NVNEKNKDFMTP 250

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 96.8 bits (242), Expect = 2e-22
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 26/184 (14%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           NC  ++ + +A      +      +               +L  A+++  +  VK  L +
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGH-------------SLLQAAREADLAKVKKTLAL 200

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGH---IDVLEELAR--AKPDAASARLIWGETILHLCVK 139
                          LH A    H     V E L R  A  +  +       T LH+  +
Sbjct: 201 EIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD---FMTPLHVAAE 256

Query: 140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTAN 199
               + ++ L ++      +NA D  G T LH A     ++  +LL +  + + + ++  
Sbjct: 257 RAHNDVMEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRLLLSYGS-DPSIISLQ 312

Query: 200 GFTA 203
           GFTA
Sbjct: 313 GFTA 316

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.8 bits (216), Expect = 5e-19
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 44  AKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA 103
           A ++     +     + +K   L  A       ++  L  +  + C  +D     PLHLA
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLHLA 65

Query: 104 AMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161
           A    + +++ L    A   A       G   LH    +   E  + LL++      +NA
Sbjct: 66  AGYNRVRIVQLLLQHGADVHAKD---KGGLVPLHNACSYGHYEVTELLLKHGAC---VNA 119

Query: 162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
            D +  T LH A +  ++E   LL +  A +   V  +G +A
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGA-DPTLVNCHGKSA 160

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  101 bits (253), Expect = 2e-24
 Identities = 48/222 (21%), Positives = 77/222 (34%), Gaps = 29/222 (13%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ----- 83
           +T LH+AA+LG     +++      +    +    +ALH+A +         LLQ     
Sbjct: 46  QTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104

Query: 84  -------VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL---ARAKPDAASARLIWGETI 133
                   +      T      P  + +     +  E      R + +A +     G T 
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD---GHTP 161

Query: 134 LHLCVKHNQLEALKFLLENMGDSELLNAKD-DYGMTILHLAVADKQIEAIKLLTTSTAIE 192
           LH+ V H   E ++ L +   D   LN  +   G T LHLAV  +    ++LL  + A +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-D 217

Query: 193 VNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
             A    G T                +  LLR  GA      
Sbjct: 218 PTARMYGGRTPLGSALLRPNP----ILARLLRAHGAPEPEDG 255

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 99.2 bits (248), Expect = 1e-23
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 22/190 (11%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEEL-------------DSRKSSALHIASQKGYV 75
            T LH+A  +     A  +L+ +P    +              D+  + A   +      
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

Query: 76  GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETI 133
                         +  + DG  PLH+A +    +++  L  A A  +        G T 
Sbjct: 139 EEEPRDEDWRLQLEA-ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--CGRTP 195

Query: 134 LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEV 193
           LHL V+      L+ LL+   D     A+   G T L  A+        +LL  +     
Sbjct: 196 LHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLL-RAHGAPE 251

Query: 194 NAVTANGFTA 203
                +  + 
Sbjct: 252 PEDGGDKLSP 261

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 97.2 bits (243), Expect = 5e-23
 Identities = 40/190 (21%), Positives = 65/190 (34%), Gaps = 19/190 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILRQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +T LH+A +  HE F   +L         +  +    +ALH+A+  G    V+ L     
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIW----------GETIL 134
                 +  G   LHLA           L   R      ++                   
Sbjct: 70  GVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 135 HLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVN 194
            +  + N     +   E+      L A++  G T LH+AV  K  E ++LL  + A ++N
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQ--LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA-DLN 185

Query: 195 AVTAN-GFTA 203
                 G T 
Sbjct: 186 KPEPTCGRTP 195

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 88.4 bits (220), Expect = 5e-20
 Identities = 31/162 (19%), Positives = 49/162 (30%), Gaps = 16/162 (9%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
            P  V +    E+  +          E  +    + LH+A       +V+ L     D  
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR----DAG 181

Query: 90  SDTDV----DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQL 143
           +D +      GR PLHLA       VLE L  A A P A       G T L   +     
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM---YGGRTPLGSALLRPNP 238

Query: 144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
              + L  +              ++    + +D   +     
Sbjct: 239 ILARLLRAHGAP---EPEDGGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 85.3 bits (212), Expect = 7e-19
 Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 22/184 (11%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCS--DTDVDGRNPLHLAAMRGHIDVLEEL--ARAKP 120
           ALH+A    +   +  LL            +  G+  LHLAA+ G    +E+L  A A  
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 121 DAASARLIWGETILHLCVKHNQLEALKFLLENMGD----------SELLNAKDDYGMTIL 170
             A      G T LHL  +         LL+              ++  +   D      
Sbjct: 72  LVAE---RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 171 HLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-I 229
            +          +       +++ A   +G T   +    K      ++  LLR AGA +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA----EMVRLLRDAGADL 184

Query: 230 SAQD 233
           +  +
Sbjct: 185 NKPE 188

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
              DG   LHLA +  H   L+ L    A  +    +   G+T LHL     +   ++ L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
                    +   +  G T LHLA   +      +L            ++ +  
Sbjct: 65  YAAGAG---VLVAERGGHTALHLACRVRAHTCACVLLQPRP-SHPRDASDTYLT 114

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 8/90 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV---I 85
            TPLH+A         + +L+              + L  A  +    + + L       
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
           P+       D  +P   +      D  +E 
Sbjct: 252 PED----GGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
           G+T LHL V H     L FLL      E L+ ++D G T LHLA    +   ++ L  + 
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
           A  V      G TA  +  + +          +L +   
Sbjct: 69  A-GVLVAERGGHTALHLACRVRAH----TCACVLLQPRP 102

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 1/55 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
            TPL  A L  +   A+ +         E    K S    +             +
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 99.9 bits (249), Expect = 6e-24
 Identities = 46/223 (20%), Positives = 74/223 (33%), Gaps = 48/223 (21%)

Query: 29  ETPLHVAALLGHEDFAKEIL----RQKPRIAEELDSRKSS---ALHIAS---QKGYVGIV 78
              +  A    +    + +L    R K R+ +       +    L  A      G    +
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 79  KALLQV----------IPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--------ARAK- 119
             LL V          +    +D+   G+  LH+A  R ++ ++  L        A A  
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 120 ----PDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV- 174
                        +GE  L L    NQL  +KFLL+N      ++A+D  G T+LH  V 
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193

Query: 175 -ADKQIEAIKLLTT-------------STAIEVNAVTANGFTA 203
            AD  ++  K +T+              T          G T 
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 88.7 bits (220), Expect = 4e-20
 Identities = 38/216 (17%), Positives = 68/216 (31%), Gaps = 49/216 (22%)

Query: 29  ETPLHVAALL---GHEDFAKEILRQKPRI----------AEELDSRKSSALHIASQKGYV 75
           +T L  A L    G  D    +L    +             +   +  +ALHIA ++  +
Sbjct: 55  KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114

Query: 76  GIVKALLQ-------------VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
            +V  L++                 K       G  PL LAA    + +++ L +     
Sbjct: 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP 174

Query: 123 AS--ARLIWGETILHLCVKHNQLEALKFLLENMGDSELL-------------NAKDDYGM 167
           A   AR   G T+LH  V+                +E+L                +  G+
Sbjct: 175 ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL 234

Query: 168 TILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
           T L LA +  +I  +  +     ++      +    
Sbjct: 235 TPLALAASSGKIGVLAYI-----LQRE---IHEPEC 262

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 27/130 (20%), Positives = 40/130 (30%), Gaps = 25/130 (19%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIA--EELDSRKSSALHIASQKGYVGIVK------- 79
           E PL +AA        K +L+   + A     DS  ++ LH   +     +         
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 80  --------ALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGE 131
                   A L         T+  G  PL LAA  G I VL  + + +            
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--------EP 260

Query: 132 TILHLCVKHN 141
              H    H+
Sbjct: 261 ECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 19/130 (14%)

Query: 91  DTDVDGRNPLHLAAMRGHIDVLEELARAKPDAAS-------ARLIWGETILHLCV---KH 140
              +  R  +  A  + +   LE L      +              G+T L   +    +
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67

Query: 141 NQLEALKFLLENMGDSELL--------NAKDDYGMTILHLAVADKQIEAIKLLTTSTAIE 192
            Q + +  LL+    ++ L              G T LH+A+  + +  + LL  + A +
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA-D 126

Query: 193 VNAVTANGFT 202
           V A     F 
Sbjct: 127 VQAAANGDFF 136

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 23/96 (23%)

Query: 30  TPLHVAALLGHEDFAKEI---------------LRQKPRIAEELDSRKSSALHIASQKGY 74
           T LH    +                        L    ++ E  + +  + L +A+  G 
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 75  VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHID 110
           +G++  +LQ         ++      H AA   H  
Sbjct: 246 IGVLAYILQR--------EIHEPECRHAAAHHHHHH 273

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 96.4 bits (241), Expect = 2e-23
 Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 16/183 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  A     +   + +     ++ +E+D+  ++ L+IA     + I KAL+    D 
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL---ARAKPDAASARLIWGETILHLCVKHNQLEA 145
               +    +P   A  +G  ++L  +   A    +  +    +G   L    +   ++ 
Sbjct: 66  NL-QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN---RYGGNALIPAAEKGHIDN 121

Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQ-----IEAIKLLTTSTAIEVNAVTANG 200
           +K LLE+ G  + ++ ++D+G T L  AV  ++      + +KLL  + A + +    +G
Sbjct: 122 VKLLLED-GRED-IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA-DQSIKDNSG 178

Query: 201 FTA 203
            TA
Sbjct: 179 RTA 181

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 92.9 bits (232), Expect = 3e-22
 Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 15/165 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPL++A      + AK ++ +   I    +S   S    A  +G   I+  +L+     
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL---ARAKPDAASARLIWGETILHL-----CVKH 140
            +  +  G N L  AA +GHID ++ L    R   D  +    +G T L           
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN---DFGYTALIEAVGLREGNQ 155

Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
              + +K L+EN  D    + KD+ G T +  A      E  K+L
Sbjct: 156 LYQDIVKLLMENGAD---QSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 92.9 bits (232), Expect = 3e-22
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 8/147 (5%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--A 116
                + L  A+Q+    + + L         + D +G  PL++A     I++ + L   
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 117 RAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD 176
            A  +  ++     ++         + E L ++L++    +L N  + YG   L  A   
Sbjct: 62  GADINLQNS---ISDSPYLYAGAQGRTEILAYMLKH-ATPDL-NKHNRYGGNALIPAAEK 116

Query: 177 KQIEAIKLLTTSTAIEVNAVTANGFTA 203
             I+ +KLL      +++     G+TA
Sbjct: 117 GHIDNVKLLLEDGREDIDFQNDFGYTA 143

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 94.4 bits (236), Expect = 3e-23
 Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 11/158 (6%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             L  AA  G     + +L ++    + L+    +AL +    G   I   LL+      
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
              D  G +P+H AA  G +D L+ L    A  +        G   +HL V+      + 
Sbjct: 63  V-QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD---GTGALPIHLAVQEGHTAVVS 118

Query: 148 FLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           FL     D   L+ +D  G+T L LA+     + + +L
Sbjct: 119 FLAAE-SD---LHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 80.1 bits (199), Expect = 4e-18
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV---- 84
           +T L V    G    A E+L+Q        D+  +S +H A++ G++  +K L++     
Sbjct: 37  KTALQVMMF-GSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94

Query: 85  -IPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL-ARAKPDAASARLIWGETILHLCVKHNQ 142
            +PD        G  P+HLA   GH  V+  L A +      AR   G T L L ++   
Sbjct: 95  NVPDG------TGALPIHLAVQEGHTAVVSFLAAESDLHRRDAR---GLTPLELALQRGA 145

Query: 143 LEALKFLLENM 153
            + +  L  +M
Sbjct: 146 QDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.5 bits (161), Expect = 5e-13
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 96  GRNPLHLAAMRGHIDVLEEL---ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
             + L  AA RG +  +  L       PDA +    +G+T L + +          LL+ 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR---FGKTALQV-MMFGSTAIALELLKQ 57

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
                  N +D  G + +H A     ++ +K+L    A +VN     G   
Sbjct: 58  GAS---PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-DVNVPDGTGALP 104

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 95.1 bits (238), Expect = 4e-23
 Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 17/177 (9%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           E    +            +           DS   + L +A   G    +  L++     
Sbjct: 9   EIVEKIKDEKSINQNLDFLR-------NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
             D D++G   L  A     + + E+L    +  +        G+T L   +     E  
Sbjct: 62  -EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD---FSGKTPLMWSIIFGYSEMS 117

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
            FLLE+  +   +N ++  G T L +A    + E +K L      +++A    G TA
Sbjct: 118 YFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKL-LELGADISARDLTGLTA 170

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D +G     +   +     L+ L   +         +  T L +        A+  L+EN
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNYRDS-------YNRTPLMVACMLGMENAIDKLVEN 57

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
                 L  KD  G T L  AV + ++   + L  S    VN    +G T 
Sbjct: 58  FDK---LEDKDIEGSTALIWAVKNNRLGIAEKL-LSKGSNVNTKDFSGKTP 104

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 95.2 bits (237), Expect = 2e-22
 Identities = 40/222 (18%), Positives = 63/222 (28%), Gaps = 49/222 (22%)

Query: 30  TPLHVAALLGH----EDFAKEILRQKPRIAEELDSRKSS---ALHIA---SQKGYVGIVK 79
             L      G         + +      + +   +  S+    L  A    Q G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 80  ALLQVIPDK----------CSDTDVDGRNPLHLAAMRGHIDVLEEL--------ARAK-- 119
            LLQ+  D           C+D    G + LH+A  +  +  ++ L         RA   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 120 --PDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADK 177
                      +GE  L L     Q + + +LLEN      L A D  G T+LH  V   
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 178 Q----------------IEAIKLLTTSTAIEVNAVTANGFTA 203
                            ++    L  +           G T 
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCPTVQ-LEEISNHQGLTP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 93.7 bits (233), Expect = 6e-22
 Identities = 46/230 (20%), Positives = 67/230 (29%), Gaps = 54/230 (23%)

Query: 4   SVNTLLE--LRQQDPLIVERPTVNCLSETPLHVAALL---GHEDFAKEILRQKPRIAEEL 58
            +  LLE        L     T     +T L  A L    G       +L+         
Sbjct: 17  ELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK 76

Query: 59  ----------DSRKSSALHIASQKGYVGIVKALLQ------------VIPDKCSDTDVDG 96
                       +  SALHIA +K  +  VK L++                        G
Sbjct: 77  PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFG 136

Query: 97  RNPLHLAAMRGHIDVLEEL-----ARAKPDAASARLIWGETILHLCVKH----------- 140
             PL LAA     DV+  L       A  +A  +    G T+LH  V             
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL---GNTVLHALVMIADNSPENSALV 193

Query: 141 -----NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
                  L+    L   +         +  G+T L LA  + +IE  + +
Sbjct: 194 IHMYDGLLQMGARLCPTVQL---EEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.5 bits (165), Expect = 6e-13
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 21/115 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAE------------------ELDSRKSSALHIAS 70
           E PL +AA     D    +L    + A                     +S ++SAL I  
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196

Query: 71  QKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAA 123
             G + +   L   +  +   ++  G  PL LAA  G I++   +        AA
Sbjct: 197 YDGLLQMGARLCPTVQLE-EISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 28/163 (17%)

Query: 96  GRNPLHLAAMRGHIDVLEEL-------ARAKPDAASARLIWGETILHLCV---KHNQLEA 145
            R+ L     RG  + L  L       ++   D+A      G+T L   V   +      
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 146 LKFLLENMGDSELL--------NAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVT 197
           +  LL+   DS             +   G + LH+A+  + ++ +KLL  + A +V+   
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA-DVHLRA 120

Query: 198 ANGFTAWDILAQSKR---------DTKDWDIGELLRRAGAISA 231
              F                     TK WD+   L       A
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 94.2 bits (234), Expect = 2e-22
 Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 13/200 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH A   GH +  + +L+    +  + D    S LHIA+  G   IVKALL      
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
            +  + +G  PLH AA +   ++   L     +   A+  +  T +H       L+ +  
Sbjct: 100 -NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 149 LLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILA 208
           LL         N +D  G T LHLA  ++++E  K L T  A  +        T   +  
Sbjct: 158 LLFYKAS---TNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIENKEEKTPLQVAK 213

Query: 209 QSKRDTKDWDIGELLRRAGA 228
                     +       G 
Sbjct: 214 GGL------GLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 90.3 bits (224), Expect = 5e-21
 Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 11/199 (5%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
              ++A     ++  + IL  K       D    +ALH A   G+  IV+ LLQ+     
Sbjct: 9   MICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV- 66

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
           +D D  G +PLH+AA  G  ++++ L        +A    G T LH     N+ E    L
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ 209
           LE   +    +AKD Y  T +H A A   ++ + +L    A   N     G T   +   
Sbjct: 126 LEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLACD 181

Query: 210 SKRDTKDWDIGELLRRAGA 228
            +R     +  + L   GA
Sbjct: 182 EERV----EEAKFLVTQGA 196

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.5 bits (157), Expect = 5e-12
 Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLE 144
           + C    V      +LA      ++ E +   ++             T LH        E
Sbjct: 2   EGC----VSNIMICNLAYSGKLDELKERILADKSLATRTD---QDSRTALHWACSAGHTE 54

Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAW 204
            ++FLL+       +N KDD G + LH+A +    E +K L    A  VNAV  NG T  
Sbjct: 55  IVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPL 110

Query: 205 DILAQSKRDTKDWDIGELLRRAGA 228
              A   R     +I  +L   GA
Sbjct: 111 HYAASKNRH----EIAVMLLEGGA 130

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.7 bits (229), Expect = 3e-22
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 14/166 (8%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
            L  A+ +G +  + +LLQ   +  +  +  GR  L +  + G+ ++   L    A PD 
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
                  G  ++H   +   L+ L+ LLE   D   +N +D+ G   LHLA  +  +  +
Sbjct: 66  KD---RTGFAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVV 119

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
           + L   TA  V      G TA D+     R+    ++  L++  GA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRN----EVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.3 bits (228), Expect = 5e-22
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 10/159 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  AA  G  +    +L+    +    +    +AL +    G   I + LL    + 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP 63

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
               D  G   +H AA  G +D L+ L   +A  +        G   LHL  K   L  +
Sbjct: 64  DL-KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED---NEGNLPLHLAAKEGHLRVV 119

Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           +FL+++   +  +  ++  G T   LA    + E + L+
Sbjct: 120 EFLVKH--TASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.0 bits (178), Expect = 3e-15
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T L V  L G+ + A+ +L +     +  D    + +H A++ G++  ++ LL+   D 
Sbjct: 39  RTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
               D +G  PLHLAA  GH+ V+E L +        R   G+T   L   + + E +  
Sbjct: 97  NI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155

Query: 149 LLEN 152
           +  N
Sbjct: 156 MQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.8 bits (167), Expect = 9e-14
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 95  DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
              N L  AA RG ++ L  L       +A +    +G T L   +K    E  + LL  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQN---GFGRTALQ-VMKLGNPEIARRLLLR 59

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
             +    + KD  G  ++H A     ++ ++ L    A +VN     G   
Sbjct: 60  GAN---PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA-DVNIEDNEGNLP 106

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.2 bits (230), Expect = 3e-22
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
               +    GH              A ++ S   +    A++K     +  LL+   D  
Sbjct: 16  MEYLIEWKDGHSPSW-VPSSYI---AADVVSEYETPWWTAARKADEQALSQLLEDR-DVD 70

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
           +  D +GR  L   A  G    +  L  A A  D    R   G T LH+   + + E ++
Sbjct: 71  A-VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR--GGLTALHMAAGYVRPEVVE 127

Query: 148 FLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
            L+E   D   +  +D+ G+T L LA    +       
Sbjct: 128 ALVELGAD---IEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 17/166 (10%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL-ARAKPDAA 123
              I  + G+               +D   +   P   AA +     L +L      DA 
Sbjct: 17  EYLIEWKDGHSPSWVPSS----YIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDAV 72

Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDD-YGMTILHLAVADKQIEAI 182
                 G T L         + ++ L E   D   L+ +D   G+T LH+A    + E +
Sbjct: 73  DEN---GRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPEVV 126

Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
           + L    A ++      G TA ++  +  +            + G 
Sbjct: 127 EALVELGA-DIEVEDERGLTALELAREILKT----TPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           ETP   AA    E      L +   + + +D    +AL   +  G    V+ L +   D 
Sbjct: 45  ETPWWTAARKADEQAL-SQLLEDRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
                  G   LH+AA     +V+E L    A  +        G T L L  +  +    
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED---ERGLTALELAREILKTTPK 159

Query: 147 KFLLEN 152
              ++ 
Sbjct: 160 GNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
           S T  +G     +    GH       +    D  S      ET      +    +AL  L
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQL 63

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTAN-GFTA 203
           LE+      ++A D+ G T L         + ++LL  + A +++      G TA
Sbjct: 64  LEDRD----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTA 113

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 93.3 bits (232), Expect = 9e-22
 Identities = 45/203 (22%), Positives = 65/203 (32%), Gaps = 35/203 (17%)

Query: 24  VNCLSETPLHVAA----LLGHEDFAKEILRQKPRIAEELDSRKSS---ALHIA---SQKG 73
           +   +   L          G E     +L  K R+ +E     S+    L  A      G
Sbjct: 1   MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAG 60

Query: 74  YVGIVKALLQVIPD----------KCSDTDVDGRNPLHLAAMRGHIDVLEEL-------- 115
               +  LL +                D    G+  LH+A  R     +E L        
Sbjct: 61  RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120

Query: 116 ARAK-----PDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTIL 170
           A+A+     P        +GE  L L    NQ   + +L EN      L  +D  G T+L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

Query: 171 HLAVA--DKQIEAIKLLTTSTAI 191
           H  VA  D   E  K +T    +
Sbjct: 181 HALVAIADNTRENTKFVTKMYDL 203

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 86.0 bits (213), Expect = 3e-19
 Identities = 41/215 (19%), Positives = 70/215 (32%), Gaps = 47/215 (21%)

Query: 29  ETPLHVAALL---GHEDFAKEILRQKPRIAE----------ELDSRKSSALHIASQKGYV 75
           +T L  A L    G  D    +L    +             ++  R  +ALHIA ++   
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 76  GIVKALLQ-------------VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL-----AR 117
             V+ L++               P         G  PL LAA      ++  L      +
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 118 AKPDAASARLIWGETILHLCV--KHNQLEALKFLLENMG-----------DSELLNAKDD 164
           A      +R   G T+LH  V    N  E  KF+ +              D+ L    ++
Sbjct: 167 ADLRRQDSR---GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN 223

Query: 165 YGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTAN 199
            G++ L +A    +I   + +      +  A   +
Sbjct: 224 DGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 89.0 bits (222), Expect = 1e-21
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 9/129 (6%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--A 116
           + R  + LHIAS KG +  V+ LLQ   D     D  G  PLH A   GH+ V+E L   
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 117 RAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD 176
           +A  +         ++ LH   K+  ++ +K LL         NA + +G+  +     +
Sbjct: 66  KALVNTTG---YQNDSPLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDE 119

Query: 177 KQIEAIKLL 185
                + L 
Sbjct: 120 SMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 80.9 bits (201), Expect = 1e-18
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           ET LH+A++ G     + +L+         D    + LH A   G++ +V+ LLQ     
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
              T     +PLH AA  GH+D+++ L    A  +A +   I+G   +      +    L
Sbjct: 70  N-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN---IFGLRPVDYTDDESMKSLL 125

Query: 147 KFLLEN 152
               +N
Sbjct: 126 LLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 80.5 bits (200), Expect = 2e-18
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 13/142 (9%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
           T+  G   LH+A+++G I  +E L    + P+        G T LH    H  L+ ++ L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD---HAGWTPLHEACNHGHLKVVELL 62

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ 209
           L++      +N       + LH A  +  ++ +KLL +  A   NAV   G    D    
Sbjct: 63  LQHKAL---VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA-SRNAVNIFGLRPVDYTDD 118

Query: 210 SKRDTKDWDIGELLRRAGAISA 231
                    +  L  +  + SA
Sbjct: 119 ESMK----SLLLLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 67.1 bits (165), Expect = 9e-14
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH A   GH    + +L+ K  +      +  S LH A++ G+V IVK LL     +
Sbjct: 44  WTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAAS 124
            +  ++ G  P+          +L    + +  +AS
Sbjct: 103 -NAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 19/188 (10%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  AAL G  +  ++ +++      + +    +ALH A       IV  L+      
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLIT----A 76

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLC--VKHN 141
            ++    D  G  PLH AA      +   L    A   A +     G T    C   +  
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS--DGATAFEKCDPYREG 134

Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
             +   +L +       +   +   +  L    + +  + +       ++ V        
Sbjct: 135 YADCATYLADVEQS---MGLMNSGAVYALWDY-SAEFGDELSFR-EGESVTVLRRDGPEE 189

Query: 202 TAWDILAQ 209
           T W   A 
Sbjct: 190 TDWWWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 12/146 (8%)

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQL 143
           P K     ++    L  AA+ G ++V+++       P   +     G T LH  +     
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN---EEGITALHNAICGANY 67

Query: 144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTAN-GFT 202
             + FL+    +   +N+ D +G T LH A +         L    A  + A T + G T
Sbjct: 68  SIVDFLITAGAN---VNSPDSHGWTPLHCAASCNDTVICMALVQHGA-AIFATTLSDGAT 123

Query: 203 AWDILAQSKRDTKDWDIGELLRRAGA 228
           A++     +      D    L     
Sbjct: 124 AFEKCDPYREGYA--DCATYLADVEQ 147

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 21/117 (17%), Positives = 30/117 (25%), Gaps = 5/117 (4%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIAS--QKGYVGIVKALLQVIPD 87
           TPLH AA          +++    I     S  ++A       ++GY      L  V   
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
                +      L   +     D L             R    ET       H Q  
Sbjct: 149 M-GLMNSGAVYALWDYS-AEFGDELSFREGESVTVL-RRDGPEETDWWWAALHGQEG 202

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 89.5 bits (223), Expect = 2e-21
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
            L  A+ +G V  V+ALL+   +  +  +  GR P+ +  M G   V E L    A+P+ 
Sbjct: 15  WLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNC 72

Query: 123 ASARLIWGETI-LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEA 181
           A        T  +H   +   L+ L  L         L+ +D +G   + LA      + 
Sbjct: 73  ADP---ATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDV 126

Query: 182 IKLLTTSTAIEVNAVTANGFTAWD 205
            + L  +              A +
Sbjct: 127 ARYLRAAAG-GTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 86.4 bits (215), Expect = 2e-20
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 12/152 (7%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  AA  G  +  + +L          +S     + +    G   + + LL    + 
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMMM-GSARVAELLLLHGAEP 70

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
                     P+H AA  G +D L  L  A A+ D   A   WG   + L  +    +  
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA---WGRLPVDLAEELGHRDVA 127

Query: 147 KFLLENMGDSELLNAKDDYGMTIL--HLAVAD 176
           ++L    G        +   +        + D
Sbjct: 128 RYLRAAAGG---TRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.8 bits (172), Expect = 2e-14
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 95  DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
              + L  AA RG ++ +  L  A A P+A ++    G   + + +        + LL +
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNAPNSY---GRRPIQVMMM-GSARVAELLLLH 66

Query: 153 MGDSELLNAKDDYGMTI-LHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
             +    N  D   +T  +H A  +  ++ + +L  + A  ++   A G    D+  +  
Sbjct: 67  GAE---PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-RLDVRDAWGRLPVDLAEELG 122

Query: 212 RDTKDWDIGELLRRAGA 228
                 D+   LR A  
Sbjct: 123 HR----DVARYLRAAAG 135

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 85.5 bits (213), Expect = 2e-20
 Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 9/123 (7%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
            LH+A++ G++ +VK LL+   D  +  D +GR PLHLAA  GH++V++ L  A A  +A
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
                  G T LHL  ++  LE +K LLE   D   +NAKD  G T LHLA  +  +E +
Sbjct: 64  KD---KNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVV 117

Query: 183 KLL 185
           KLL
Sbjct: 118 KLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 83.2 bits (207), Expect = 1e-19
 Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 7/126 (5%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH+AA  GH +  K +L     +    D    + LH+A++ G++ +VK LL+   D 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +  D +GR PLHLAA  GH++V++ L  A A  +A       G T LHL  ++  LE +
Sbjct: 62  NA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVV 117

Query: 147 KFLLEN 152
           K LLE 
Sbjct: 118 KLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 72.4 bits (179), Expect = 1e-15
 Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 9/111 (8%)

Query: 95  DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           +GR PLHLAA  GH++V++ L  A A  +A       G T LHL  ++  LE +K LLE 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
             D   +NAKD  G T LHLA  +  +E +KLL  + A +VNA   NG T 
Sbjct: 58  GAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTP 104

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 26/178 (14%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           ETP   AA    E    ++L  + R  + +D    +AL   +  G    V+ L +   D 
Sbjct: 46  ETPWWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
                  G   LH+AA     +V+E L    A  +        G T L L  +  +    
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED---ERGLTALELAREILKTTPK 160

Query: 147 KFLLEN-----------------MGDSEL--LNAKDDYGMTILHLAVADKQIEAIKLL 185
              ++                     +E+  +  K   G  + +L       +   + 
Sbjct: 161 GNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 38/209 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           E    + +    E                     +    I  + G+              
Sbjct: 2   EVNKIIGSRTAGEG--------------------AMEYLIEWKDGHSPSWVPSS----YI 37

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL-ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
            +D   +   P   AA +     L +L      DA       G T L         + ++
Sbjct: 38  AADVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDEN---GRTALLFVAGLGSDKCVR 94

Query: 148 FLLENMGDSELLNAKD-DYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
            L E   D   L+ +D   G+T LH+A    + E ++ L    A ++      G TA ++
Sbjct: 95  LLAEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALEL 150

Query: 207 LAQSKRDTKDWDIGELLRRAGA-ISAQDL 234
             +  +            + G  I  + +
Sbjct: 151 AREILKT----TPKGNPMQFGRRIGLEKV 175

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 28/175 (16%), Positives = 53/175 (30%), Gaps = 33/175 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T L   A LG +   + +      +         +ALH+A+      +V+AL+    + 
Sbjct: 78  RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV----EL 133

Query: 89  CSD---TDVDGRNPLHLAAMRGHIDVLEELAR--AKPDA-ASARLIW------------- 129
            +D    D  G   L LA             +   +        ++              
Sbjct: 134 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIV 193

Query: 130 -----GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQI 179
                G+ + +L    +  +       ++ +     AKD      L  AVA+  I
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE---DVAKD--YEDGLEYAVAESVI 243

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 81.7 bits (203), Expect = 4e-19
 Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
               A + G +  VK  +    D  + T   GR PLH AA  G +++LE L    A  +A
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173
                    T L   V    +  +K LL    D      K   G+T     
Sbjct: 69  PD---KHHITPLLSAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.4 bits (184), Expect = 2e-16
 Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 7/121 (5%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +     A   G  D  K+ + +   +           LH A+  G + I++ LL    D 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
            +  D     PL  A   GH+  ++ L    A           G T             L
Sbjct: 67  NA-PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG---PDGLTAFEATDNQAIKALL 122

Query: 147 K 147
           +
Sbjct: 123 Q 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 73.2 bits (181), Expect = 5e-16
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 95  DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
                   A   G +D +++        +        G   LH      QLE L+FLL  
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL---EGGRKPLHYAADCGQLEILEFLLLK 62

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
             D   +NA D + +T L  AV +  +  +KLL +  A +      +G TA
Sbjct: 63  GAD---INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA-DKTVKGPDGLTA 109

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 83.2 bits (206), Expect = 6e-19
 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 37/185 (20%)

Query: 25  NCLSE-TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKS--SALHIASQKGYVGIVKAL 81
           N +SE   +  AA+LG  +   E+  +     E +         L   + +    I   L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 82  LQVIPDKCSD---TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI---------- 128
           +    +K +D      +G          G  D+       K        +          
Sbjct: 62  I----NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK------IFLEKGADITALY 111

Query: 129 -WGETILHLCVKHNQLEAL------KFLLENMG-DSELLNAKDDYGMTILHLAVADKQIE 180
              + ++   + +  ++        K +    G     L  KD +G+T L      ++  
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTALEFVKRCQKPI 168

Query: 181 AIKLL 185
           A+K++
Sbjct: 169 ALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 15/146 (10%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVK--ALLQVIPD 87
             L           +  ++ +   I +      ++      Q G   I     L ++  +
Sbjct: 44  DVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 88  KCSD---TDVDGRNPLHLAAMRGHIDVLEELARAKPDAAS------ARLIWGETILHLCV 138
           K +D        +  +        +D  E +   K   +        +  WG T L    
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162

Query: 139 KHNQLEALKFLLENMGDSELLNAKDD 164
           +  +  ALK + + +      N K++
Sbjct: 163 RCQKPIALKMMEDYIKK---YNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 8/109 (7%), Positives = 16/109 (14%), Gaps = 21/109 (19%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEEL----------DSRKSSALHIASQKGYVGIV 78
            T        G  D           + +                   +       +V   
Sbjct: 76  TTLFFPLFQGGGNDITGTT-----ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN 130

Query: 79  KALLQV---IPDKCSD---TDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
           + +                 D  G   L           L+ +      
Sbjct: 131 EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 4/107 (3%)

Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
               +         E    L E   + +    K +    +L     + + +    L    
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 190 AIEVNAVTANGFTAWDILAQ--SKRDTKDWDIGELLRRAGA-ISAQD 233
           A ++ + T  G T +  L Q      T   ++ ++    GA I+A  
Sbjct: 66  A-DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY 111

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 81.7 bits (203), Expect = 7e-19
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 56  EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
             L     + L  A+ +G V  V+ LL+   D  +  +  GR P+ +    G   V E L
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMM-MGSAQVAELL 63

Query: 116 --ARAKPDAASARLIWGETI-LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHL 172
               A+P+ A        T  +H   +   L+ L  L         L+  D +G   + L
Sbjct: 64  LLHGAEPNCAD---PATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDL 117

Query: 173 AVADKQIEAIKLL 185
           A      +  + L
Sbjct: 118 AEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 79.4 bits (197), Expect = 5e-18
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           +  L  AA  G  +  +++L         L+      + +    G   + + LL    + 
Sbjct: 13  DAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP 70

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEAL 146
                     P+H AA  G +D L  L  A A+ D   A   WG   + L  +    +  
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA---WGRLPVDLAEEQGHRDIA 127

Query: 147 KFLLEN 152
           ++L   
Sbjct: 128 RYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLL 150
                  L  AA RG ++ + +L  A A P+A +    +G   + + +     +  + LL
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNALN---RFGRRPIQVMMM-GSAQVAELLL 64

Query: 151 ENMGDSELLNAKDDYGMTI-LHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ 209
            +  +    N  D   +T  +H A  +  ++ + +L  + A  ++   A G    D+  +
Sbjct: 65  LHGAE---PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-RLDVCDAWGRLPVDLAEE 120

Query: 210 SKRDTKDWDIGELLRRAGA 228
                   DI   L  A  
Sbjct: 121 QGHR----DIARYLHAATG 135

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 85.9 bits (212), Expect = 1e-18
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 17/197 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG---YVGIVKALLQVI 85
            TPLH    + + +  K +++         D+   S L  A +       G  +ALL  +
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190

Query: 86  PDKCSDTDVDGRNPLHLAAM-----------RGHID-VLEELARAKPDAASARLIWGETI 133
                  D   R  LH   +           + ++D ++  + + +     +     E+ 
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 134 LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEV 193
            +      +   L+ L      + +LNA+D  G T L++A     I  +  L    A + 
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA-DP 309

Query: 194 NAVTANGFTAWDILAQS 210
                +G    D  A  
Sbjct: 310 FIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.4 bits (172), Expect = 1e-13
 Identities = 32/223 (14%), Positives = 61/223 (27%), Gaps = 22/223 (9%)

Query: 28  SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
            E  L        ++    +         E  S      H++       +  A      +
Sbjct: 63  LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN 122

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHN---Q 142
                D  G  PLH      ++++++ L    +           GE+ L   VK      
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM---GESCLVKAVKSVNNYD 179

Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAV-----------ADKQIEAIKLLTTSTAI 191
               + LL+ +     L  +D    TILH  +           A   ++ +         
Sbjct: 180 SGTFEALLDYLYPC--LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 237

Query: 192 EVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
                  N   +       +R     +  +L       ++AQD
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD 280

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 80.5 bits (200), Expect = 2e-18
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 9/123 (7%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
            L  A++ G    V+ L+    D  +  D  G  PL+LA   GH++++E L    A  +A
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
                  G T LHL      LE  + LL++  D   +NA+D +G T   +++ +   +  
Sbjct: 76  VD---AIGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLA 129

Query: 183 KLL 185
           ++L
Sbjct: 130 EIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.4 bits (166), Expect = 7e-14
 Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 95  DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           D    L  AA  G  D +  L    A  +A      +G T L+L   H  LE ++ LL+N
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKD---EYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
             D   +NA D  G T LHLA     +E  ++L    A +VNA    G TA
Sbjct: 70  GAD---VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNAQDKFGKTA 116

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.1 bits (147), Expect = 3e-11
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV---I 85
            TPL++A   GH +  + +L+    +   +D+   + LH+A+  G++ I + LL+    +
Sbjct: 48  LTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
             +    D  G+    ++   G+ D+ E L
Sbjct: 107 NAQ----DKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82
            TPLH+AA +GH + A+ +L+    +    D    +A  I+   G   + + L 
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.8 bits (207), Expect = 7e-18
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 8/164 (4%)

Query: 17  LIVERPTVNCLSETPLHVAALLGHEDFAKEI--LRQKPRIAEELDSRKSSALHIASQKGY 74
           L  +       SE    VAA+ G       +  L     I + + +    A  +A++ G+
Sbjct: 81  LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 140

Query: 75  VGIVKALLQVIPDKC-SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARL-IWGET 132
           + ++  L ++ P +  +    +  +   LAA  GH+ VL  L    P  A+A +      
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200

Query: 133 ILHL-CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA 175
                 V       + FLL+       L   + +        V 
Sbjct: 201 AFRWAAVGRGHHNVINFLLDCPVM---LAYAEIHEFEYGEKYVN 241

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.8 bits (186), Expect = 3e-15
 Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 38/203 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEE-LDSRKSSALHIAS-QKGYVGIVKALLQVIP 86
                +AA  GH      +    P  A   + +    A   A+  +G+  ++  LL    
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 87  DK---------------------CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASA 125
                                    +   +  +   L+   G  D++ +    +      
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ------ 277

Query: 126 RLIWGETILHLCVKHNQ---LEALKFLLENMGDSEL--LNAKDDYGMTILHLAVADKQIE 180
               G  +L   ++ N    L+ ++FLL   G   L            +L LA+      
Sbjct: 278 ----GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333

Query: 181 AIKLLTTSTAIEVNAVTANGFTA 203
           A  LL +  ++       N +  
Sbjct: 334 ACALLLSIPSVLALTKANNYYIN 356

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 13/95 (13%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIA--------EELDSRKSSALHIASQKGYVGIVKAL 81
             L        E    + +R    I           +    +  L +A + G  G    L
Sbjct: 280 YMLRNLIRRNDEVLL-DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338

Query: 82  LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELA 116
           L +     S   +   N  ++    G +D+     
Sbjct: 339 LSI----PSVLALTKANNYYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
             L +A  LG++     +L         L   K++  +I    G + +    L+
Sbjct: 321 ELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAVALE 370

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.0 bits (191), Expect = 2e-17
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 9/109 (8%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
            LH A++ G+   VK LL    D  +    DG  PLHLAA  GH ++++ L    A  +A
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILH 171
            S     G T  HL  K+   E +K L     D   +NA+        H
Sbjct: 71  RS---KDGNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.6 bits (177), Expect = 1e-15
 Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLL 150
             DG  PLH AA  GH + +++L    A  +A S     G T LHL  K+   E +K LL
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS---KDGNTPLHLAAKNGHAEIVKLLL 62

Query: 151 ENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
               D   +NA+   G T  HLA  +   E +KLL    A +VNA +      
Sbjct: 63  AKGAD---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-DVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.5 bits (174), Expect = 4e-15
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH AA  GH +  K++L +   +        ++ LH+A++ G+  IVK LL    D 
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILH 135
            +    DG  P HLA   GH ++++ L    A  +A S          H
Sbjct: 69  -NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS---WGSSHHHH 113

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.5 bits (169), Expect = 8e-15
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+AA  GH +  K +L     +    D    + LH+A++ G++ +VK LL+   D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEEL 115
           +  D +GR PLHLAA  GH++V++ L
Sbjct: 63  A-KDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.2 bits (168), Expect = 1e-14
 Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 8/93 (8%)

Query: 95  DGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           +GR PLHLAA  GH++V++ L  A A  +A       G T LHL  ++  LE +K LLE 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
             D   +NAKD  G T LHLA  +  +E +KLL
Sbjct: 58  GAD---VNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.1 bits (160), Expect = 2e-13
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 6/90 (6%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDA 122
            LH+A++ G++ +VK LL+   D  +  D +GR PLHLAA  GH++V++ L  A A  +A
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLEN 152
                  G T LHL  ++  LE +K LLE 
Sbjct: 64  KDK---NGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.6 bits (112), Expect = 5e-07
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82
          TPLH+AA  GH +  K +L     +    D    + LH+A++ G++ +VK LL
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
           +       L  AA  G +D  + ++     +    D   S+ LH+A++ G++ +VK LL+
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
              D  +  D  G+    ++   G+ D+ E L
Sbjct: 79  AGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 35  AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
            +   H   +  ++ +   +     S     L  A++ G    V+ L+    D  +  D 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK 55

Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
           +G  PLHLAA  GH++V++ L  A  D   A+  +G+T   + + +   +  + L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 36/156 (23%), Positives = 54/156 (34%), Gaps = 46/156 (29%)

Query: 69  ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
            S   +      L+     + S    D    L  AA  G  D +                
Sbjct: 1   GSSHHHHHHSSGLV----PRGSHMGSDLGKKLLEAARAGQDDEV---------------- 40

Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
                             + L+ N  D   + AKD  G T LHLA  +  +E +KLL  +
Sbjct: 41  ------------------RILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79

Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLR 224
            A +V A    G TA+DI   +  +    D+ E+L+
Sbjct: 80  GA-DVXAQDKFGKTAFDISIDNGNE----DLAEILQ 110

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 28  SETPLHVAALLGHEDFAK--EILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
            ET LH+A            + L Q     ++   + S+ALH          +K LL+  
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAK 119
                  +  G  PL +A    H    E L +A 
Sbjct: 229 AS-IEIANESGETPLDIAKRLKHEHCEELLTQAL 261

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 86  PDKCSDTDVDGRNPLHLAAMRGHIDVLE--ELARAKPDAASARLIWGETILHLCVKHNQL 143
               ++        LHLA        L   +           +   G T LH C   +  
Sbjct: 159 KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA 218

Query: 144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           E LK LL        +   ++ G T L +A   K     +LL
Sbjct: 219 ECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 130 GETILHL---CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT 186
            ET LHL    V    L  + FL++N G+   L+ +   G T LH        E +KLL 
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 187 TSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA 226
              A  +     +G T  DI  + K +       ELL +A
Sbjct: 226 RGKA-SIEIANESGETPLDIAKRLKHE----HCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 59  DSRKSSALHIASQKG---YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
                +ALH+A +      + IV  L+Q            G   LH   +  + + L+ L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 116 AR--AKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
            R  A  + A+     GET L +  +       + L +
Sbjct: 225 LRGKASIEIANES---GETPLDIAKRLKHEHCEELLTQ 259

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.7 bits (126), Expect = 7e-08
 Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 130 GETILHLCV---KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT 186
            E +LHL V       L  + F+++N G    L+AK   G T LH A    Q + +KLL 
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 187 TSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA 226
              A  V  V   G TA DI     R     +  ELL +A
Sbjct: 247 KGRA-LVGTVNEAGETALDIA----RKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
           T LH AAL    D  K +L+ +  +   ++    +AL IA +K +    + L Q     
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGT 285

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 51  KPRIAEELDSRKSSALHIASQKGYVG---IVKALLQVIPDKCSDTDVDGRNPLHLAAMRG 107
           +P    +  + +   LH+A +        +V  ++Q           DG   LH AA+  
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYN 237

Query: 108 HIDVLEEL--ARAKPDAASARLIWGETILHLCVK--HNQLEAL 146
             D L+ L   RA     +     GET L +  K  H + E L
Sbjct: 238 QPDCLKLLLKGRALVGTVNEA---GETALDIARKKHHKECEEL 277

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
             T L      N L A +FLL+N  +   +N  D  G   LH A          L     
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGAN---VNQADSAGRGPLHHATILGHTGLACLFLKRG 291

Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA 226
           A ++ A  + G     I      +T + DI  LLR A
Sbjct: 292 A-DLGARDSEGRDPLTIA----METANADIVTLLRLA 323

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 28  SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           + TPL  A          E L Q      + DS     LH A+  G+ G+    L+   D
Sbjct: 235 NATPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293

Query: 88  KCSDTDVDGRNPLHLAAMRGHIDVLEELARAK 119
                D +GR+PL +A    + D++  L  AK
Sbjct: 294 -LGARDSEGRDPLTIAMETANADIVTLLRLAK 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 60/364 (16%), Positives = 114/364 (31%), Gaps = 104/364 (28%)

Query: 41  EDFAKEILRQ-----KPRIAEEL-------------------DSRKSSALHIASQKGYVG 76
           + F +E+LR         I  E                    D++  +  +++  + Y+ 
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 77  IVKALLQVIPDK-------------------CSDTDVDGRNP-----LHLAAMRGHIDVL 112
           + +ALL++ P K                   C    V  +       L+L        VL
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 113 EELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD--SELLNAKDDYGMTIL 170
           E L +          +  +   +   + +    +K  + ++      LL +K  Y   +L
Sbjct: 200 EMLQK----------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLL 248

Query: 171 HLA-VADKQ-IEA--IK---LLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELL 223
            L  V + +   A  +    LLTT      + ++A   T   +   S   T D ++  LL
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLL 307

Query: 224 RRAGAISAQDLQLPANE-----LAVI--QTNSVTSHENNQKHEGKKDL----KGTPWNLD 272
            +      QDL           L++I        +  +N KH     L    + +   L+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 273 DWLEKKRNAAMVVASVISTMGFQAAVD-PPQSPQLAASSFVVWNTIGF---------LAS 322
               +K    + V        F  +   P     L+    ++W  +           L  
Sbjct: 368 PAEYRKMFDRLSV--------FPPSAHIPTIL--LS----LIWFDVIKSDVMVVVNKLHK 413

Query: 323 LSLI 326
            SL+
Sbjct: 414 YSLV 417

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.9e-37  Score=278.80  Aligned_cols=220  Identities=23%  Similarity=0.251  Sum_probs=200.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.+..  ...|..|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|
T Consensus         1 gg~~~~i~~Ll~~g~~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   77 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLH--NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQIL   77 (223)
T ss_dssp             ----CCEETTEETTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCCcc--cccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            378899999999987753  334788999999999999999999999999887 78899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      ++.++...+..|..|.||||+|+..|+.+++++|++++++. ...|..|+||||+|+..|+.+++++|+++|++   ++.
T Consensus        78 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~  153 (223)
T 2f8y_A           78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDM  153 (223)
T ss_dssp             HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTC
T ss_pred             HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCC
Confidence            99998666889999999999999999999999999999887 66788899999999999999999999999998   889


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~  233 (434)
                      +|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+.    .+..+++++|.+.|+...++
T Consensus       154 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          154 QNNREETPLFLAAREGSYETAKVLLDHFA-NRDITDHMDRLPRDIAQE----RMHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCSSCC-
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCccccccCCCHHHHHHH----hcchHHHHHHHHcCCCcccc
Confidence            99999999999999999999999999988 999999999999999999    77789999999999986554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1e-36  Score=276.82  Aligned_cols=215  Identities=25%  Similarity=0.292  Sum_probs=199.8

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+++.++++++.++...  +..|..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+..|+.+++++|
T Consensus        16 ~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   92 (231)
T 3aji_A           16 SGKLDELKERILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKAL   92 (231)
T ss_dssp             HTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hCCHHHHHHHHHhchhhh--hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHH
Confidence            589999999999887653  556888999999999999999999999999887 78899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      ++++.+. +..|..|.||||+|+..|+.+++++|++++.++ ...+..|.||||+|+..|+.+++++|++.|++   ++.
T Consensus        93 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~  167 (231)
T 3aji_A           93 LVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNI  167 (231)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCC
T ss_pred             HHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccc
Confidence            9999987 788999999999999999999999999999887 66788899999999999999999999999999   889


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      +|.+|+||||+|+..++.+++++|+++|+ +++.+|..|.||+|+|..    .+..++.++|.++|++
T Consensus       168 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          168 QDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIENKEEKTPLQVAKG----GLGLILKRLAEGEEAS  230 (231)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHSCH----HHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHh----hHHHHHHHHHcccccc
Confidence            99999999999999999999999999988 999999999999999987    6678899999987654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.3e-36  Score=278.91  Aligned_cols=212  Identities=24%  Similarity=0.253  Sum_probs=182.9

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL   82 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll   82 (434)
                      ++.++++.|++.+++..  ...|..|.||||+|+..|+.++++.|+++++++ +..|..|+||||+|+..|+.+++++|+
T Consensus        34 ~~~~~v~~Ll~~g~~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll  110 (253)
T 1yyh_A           34 DAPAVISDFIYQGASLH--NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI  110 (253)
T ss_dssp             --------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CChHHHHHHHHccCCcc--cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            48999999999997753  335788999999999999999999999999987 788999999999999999999999999


Q ss_pred             hhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCC
Q 041009           83 QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK  162 (434)
Q Consensus        83 ~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  162 (434)
                      +.++...+..|..|.||||+|+..|+.+++++|++++++. +..|..|+||||+|+.+|+.+++++|++.|++   ++.+
T Consensus       111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~  186 (253)
T 1yyh_A          111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQ  186 (253)
T ss_dssp             HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCC
T ss_pred             HcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCc
Confidence            9998555889999999999999999999999999999987 67788999999999999999999999999999   8899


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHc
Q 041009          163 DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA  226 (434)
Q Consensus       163 d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~  226 (434)
                      |..|+||||+|+..|+.+++++|+++|+ +++.+|..|+||+|+|+.    .++.+++++|...
T Consensus       187 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~~A~~----~g~~~i~~~l~~~  245 (253)
T 1yyh_A          187 NNREETPLFLAAREGSYETAKVLLDHFA-NRDITDHMDRLPRDIAQE----RMHHDIVRLLDLE  245 (253)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCC-CccccccCCCCHHHHHHH----cCCHHHHHHHHHH
Confidence            9999999999999999999999999988 999999999999999999    7788999998854

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.7e-36  Score=280.42  Aligned_cols=210  Identities=26%  Similarity=0.254  Sum_probs=186.6

Q ss_pred             cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCc--hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCH
Q 041009           22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPR--IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP   99 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp   99 (434)
                      +.+|.+|.||||+||..|+.+++++|++.+++  .++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tp   81 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA   81 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence            44688999999999999999999999998876  25888999999999999999999999999999988 7899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCcc----------------------------------------------cccccCCCChH
Q 041009          100 LHLAAMRGHIDVLEELARAKPDA----------------------------------------------ASARLIWGETI  133 (434)
Q Consensus       100 L~~Aa~~g~~~~v~~Ll~~~~~~----------------------------------------------~~~~~~~g~t~  133 (434)
                      ||+|+..|+.+++++|++++++.                                              ....+..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            99999999999999999987652                                              24567789999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCccccCCCC-CCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccC
Q 041009          134 LHLCVKHNQLEALKFLLENMGDSELLNAKDD-YGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR  212 (434)
Q Consensus       134 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~  212 (434)
                      ||+|+.+|+.+++++|+++|++   ++.++. .|+||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+.   
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~---  234 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMYGGRTPLGSALL---  234 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHT---
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCcccccCCCCHHHHHHH---
Confidence            9999999999999999999999   788875 49999999999999999999999988 999999999999999998   


Q ss_pred             CCchhHHHHHHHHcCCCccccCCCChhh
Q 041009          213 DTKDWDIGELLRRAGAISAQDLQLPANE  240 (434)
Q Consensus       213 ~~~~~~i~~~L~~~g~~~~~~~~~~~~~  240 (434)
                       .+..+++++|+++|++...........
T Consensus       235 -~~~~~~v~~Ll~~ga~~~~~~~~g~tp  261 (282)
T 1oy3_D          235 -RPNPILARLLRAHGAPEPEDGGDKLSP  261 (282)
T ss_dssp             -SSCHHHHHHHHHTTCCCCCCC------
T ss_pred             -cCCcHHHHHHHHcCCCcCcCCCccccc
Confidence             677899999999999976544443333

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.2e-36  Score=275.95  Aligned_cols=204  Identities=25%  Similarity=0.258  Sum_probs=158.7

Q ss_pred             ccccCCCCCCHHHHHHhcC-------------CHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCC
Q 041009           21 RPTVNCLSETPLHVAALLG-------------HEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD   87 (434)
Q Consensus        21 ~~~~~~~g~t~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~   87 (434)
                      .+.+|.+|.||||+|+..|             +.++++.|++.++++.+..|..|.||||+|+..|+.+++++|++.+++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4567889999999999987             899999999999998777899999999999999999999999999998


Q ss_pred             CCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCC
Q 041009           88 KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGM  167 (434)
Q Consensus        88 ~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~  167 (434)
                      . +..|..|.||||+|+..|+.+++++|+++++......+..|.||||+|+..|+.+++++|++.|++   ++.+|.+|+
T Consensus        83 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~  158 (253)
T 1yyh_A           83 A-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGK  158 (253)
T ss_dssp             T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC---TTCBCTTSC
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---CCCcCCCCC
Confidence            7 789999999999999999999999999999866688889999999999999999999999999999   899999999


Q ss_pred             cHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009          168 TILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       168 t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~  233 (434)
                      ||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+.    .+..+++++|++.|++....
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~~  219 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDIT  219 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCcccc
Confidence            99999999999999999999988 999999999999999998    66789999999999986543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.4e-35  Score=267.04  Aligned_cols=209  Identities=21%  Similarity=0.241  Sum_probs=164.8

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcC--CchhhccCCCCCcHHHHHHHcCCHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQK--PRIAEELDSRKSSALHIASQKGYVGIVK   79 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~Aa~~g~~~iv~   79 (434)
                      .|+.+.++.|++.++...  ...|..|.||||+|+..|+.+++++|++.+  .+.....|..|.||||+|+..|+.++++
T Consensus        12 ~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~   89 (228)
T 2dzn_A           12 ENEFFKVQELLHSKPSLL--LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK   89 (228)
T ss_dssp             TTCHHHHHHHHHHCGGGT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             hCCHHHHHHHHhcCcccc--ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHH
Confidence            578888888888876543  335777888888888888888888888887  5553336788888888888888888888


Q ss_pred             HHHhhC--CCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhc-CCC
Q 041009           80 ALLQVI--PDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENM-GDS  156 (434)
Q Consensus        80 ~Ll~~~--~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~  156 (434)
                      +|++.+  .+. +..|..|.||||.|+..|+.+++++|++++.+. +..|..|+||||+|+..|+.+++++|++.| .+ 
T Consensus        90 ~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-  166 (228)
T 2dzn_A           90 SLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-  166 (228)
T ss_dssp             HHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC-
T ss_pred             HHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc-
Confidence            888887  554 667788888888888888888888888887776 566777888888888888888888888888 66 


Q ss_pred             ccccCCCCCCCcHHHHHHHcCcHHHHHHhh-hcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHH
Q 041009          157 ELLNAKDDYGMTILHLAVADKQIEAIKLLT-TSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR  225 (434)
Q Consensus       157 ~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll-~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~  225 (434)
                        ++.+|.+|+||||+|+..|+.+++++|+ +.|+ +++.+|.+|.||+|+|.+       .++.++|.+
T Consensus       167 --~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga-~~~~~~~~g~t~l~~A~~-------~~~~~~l~~  226 (228)
T 2dzn_A          167 --VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA-EYDLVDNKGAKAEDVALN-------EQVKKFFLN  226 (228)
T ss_dssp             --SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC-CSCCBCTTSCBGGGGCSS-------TTHHHHHHT
T ss_pred             --ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-CCCccCCCCCcHHHHHHH-------HHHHHHHHh
Confidence              7788888888888888888888888888 5665 888888888888888754       245555543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.7e-35  Score=266.86  Aligned_cols=198  Identities=24%  Similarity=0.260  Sum_probs=96.3

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL   82 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll   82 (434)
                      |+.++++.|++.+.++   +..+..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+
T Consensus        22 g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll   97 (237)
T 3b7b_A           22 GHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLL   97 (237)
T ss_dssp             TCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCc---CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            4445555555544322   333444555555555555555555555544443 344444555555555555555555555


Q ss_pred             hhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCC
Q 041009           83 QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK  162 (434)
Q Consensus        83 ~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  162 (434)
                      +.++...+..|..|.||||+|+..|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|++.|++   ++.+
T Consensus        98 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~  173 (237)
T 3b7b_A           98 SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD---LHAV  173 (237)
T ss_dssp             TTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC---TTCC
T ss_pred             hCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCc
Confidence            5443222444444555555555555555555555544443 33344455555555555555555555555444   4444


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          163 DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       163 d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      |..|+||||+|+..++.+++++|+++|+ +++.+|.+|.||+|+|+.
T Consensus       174 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          174 NIHGDSPLHIAARENRYDCVVLFLSRDS-DVTLKNKEGETPLQCASL  219 (237)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTC-CTTCCCTTSCCHHHHSCT
T ss_pred             CCCCCCHHHHHHHhCCHhHHHHHHHcCC-CCCccCCCCCCHHHHHHH
Confidence            4455555555555555555555554444 455555555555555444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.1e-35  Score=269.64  Aligned_cols=196  Identities=25%  Similarity=0.297  Sum_probs=98.1

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHh----cCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHH
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILR----QKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPL  100 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  100 (434)
                      |.+|.||||+||..|+.++++.|++    .+.++ +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.|||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l   83 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA   83 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence            4445555555555555555555554    22222 444555555555555555555555555555444 44455555555


Q ss_pred             HHHHHhCCHHHHHHHHHhCCc---ccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC-CCCCcHHHHHHHc
Q 041009          101 HLAAMRGHIDVLEELARAKPD---AASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD-DYGMTILHLAVAD  176 (434)
Q Consensus       101 ~~Aa~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d-~~g~t~LhlA~~~  176 (434)
                      |+|+..|+.+++++|++.++.   .....+..|.||||+|+..|+.+++++|++.|++   ++..| ..|.||||+|+..
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC---cccccccCCCcHHHHHHHc
Confidence            555555555555555555441   1133344455555555555555555555555544   44444 4455555555555


Q ss_pred             CcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009          177 KQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       177 ~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                      |+.+++++|+++|. +++..|.+|.||+|+|+.    .+..+++++|++.|++.
T Consensus       161 ~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~  209 (241)
T 1k1a_A          161 NSLSMVQLLLQHGA-NVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADS  209 (241)
T ss_dssp             TCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCT
T ss_pred             CCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCC
Confidence            55555555555544 555555555555555554    33344555555555543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-35  Score=275.28  Aligned_cols=203  Identities=23%  Similarity=0.201  Sum_probs=175.0

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+......+..|..|.||||+||..|+.++++.|+++|+++ +..|..|.||||+|+..|+.+++++|
T Consensus        19 ~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~L   97 (282)
T 1oy3_D           19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVL   97 (282)
T ss_dssp             TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhh
Confidence            68999999999987664334667889999999999999999999999999987 78899999999999999999999999


Q ss_pred             HhhCCCC----------------------------------------------CccCCCCCCCHHHHHHHhCCHHHHHHH
Q 041009           82 LQVIPDK----------------------------------------------CSDTDVDGRNPLHLAAMRGHIDVLEEL  115 (434)
Q Consensus        82 l~~~~~~----------------------------------------------~~~~d~~g~tpL~~Aa~~g~~~~v~~L  115 (434)
                      ++.+++.                                              .+..|..|.||||+|+..|+.+++++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  177 (282)
T 1oy3_D           98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL  177 (282)
T ss_dssp             SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence            9987651                                              256788999999999999999999999


Q ss_pred             HHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccc
Q 041009          116 ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNA  195 (434)
Q Consensus       116 l~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~  195 (434)
                      +++++++....+..|+||||+|+++|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++|+ +++.
T Consensus       178 l~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~  253 (282)
T 1oy3_D          178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLLRAHGA-PEPE  253 (282)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC-CCCC
T ss_pred             HHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCcHHHHHHHHcCC-CcCc
Confidence            9999998554445699999999999999999999999999   89999999999999999999999999999999 9999


Q ss_pred             cccCCCCHHHHHHH
Q 041009          196 VTANGFTAWDILAQ  209 (434)
Q Consensus       196 ~n~~g~t~l~la~~  209 (434)
                      +|.+|.||+++|..
T Consensus       254 ~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          254 DGGDKLSPCSSSGS  267 (282)
T ss_dssp             CC------------
T ss_pred             CCCcccccccccCC
Confidence            99999999999877

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-34  Score=267.43  Aligned_cols=218  Identities=22%  Similarity=0.225  Sum_probs=154.1

Q ss_pred             CCChHHHHHHHhcCCCccccccc-CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTV-NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~   80 (434)
                      .|+++.++.|++.++++   +.. +..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++
T Consensus        15 ~g~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~   90 (285)
T 1wdy_A           15 NEDVDLVQQLLEGGANV---NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKL   90 (285)
T ss_dssp             TTCHHHHHHHHHTTCCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCc---ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHH
Confidence            57888888888877654   223 566788888888888888888888887776 6677788888888888888888888


Q ss_pred             HHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccc---------cCCCChHHHHHHHcCCHHHHHHHHH
Q 041009           81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASAR---------LIWGETILHLCVKHNQLEALKFLLE  151 (434)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~---------~~~g~t~Lh~A~~~g~~~~v~~Ll~  151 (434)
                      |++++.+. +..|..|.||||+|+..|+.+++++|++++++.....         +..|.||||.|+..|+.+++++|++
T Consensus        91 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  169 (285)
T 1wdy_A           91 FLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  169 (285)
T ss_dssp             HHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence            88887776 6677777888888888888888888777776653221         5557777777777777777777776


Q ss_pred             h-cCCCccccCCCCCCCcHHHHHHHcCc----HHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHH-
Q 041009          152 N-MGDSELLNAKDDYGMTILHLAVADKQ----IEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR-  225 (434)
Q Consensus       152 ~-~~~~~~~~~~d~~g~t~LhlA~~~~~----~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~-  225 (434)
                      . |.+   ++.+|..|+||||+|+..++    .+++++|+++|. +++.+|..|.||+|+|+.    .+..+++++|.+ 
T Consensus       170 ~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~  241 (285)
T 1wdy_A          170 EMGAD---VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVE----KKHLGLVQRLLEQ  241 (285)
T ss_dssp             TSCCC---TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-CSSCCCTTSCCHHHHHHH----TTCHHHHHHHHHS
T ss_pred             hcCCC---CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHH----cCCHHHHHHHHhc
Confidence            5 555   56666666666666666666    666666666655 666666666666666666    445566666665 


Q ss_pred             cCCCccc
Q 041009          226 AGAISAQ  232 (434)
Q Consensus       226 ~g~~~~~  232 (434)
                      .|++...
T Consensus       242 ~g~~~~~  248 (285)
T 1wdy_A          242 EHIEIND  248 (285)
T ss_dssp             SSCCTTC
T ss_pred             cCCCccc
Confidence            5555433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.6e-34  Score=261.96  Aligned_cols=203  Identities=22%  Similarity=0.269  Sum_probs=190.1

Q ss_pred             cccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCH
Q 041009           20 ERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP   99 (434)
Q Consensus        20 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp   99 (434)
                      +.+..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~   80 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTC   80 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcH
Confidence            34567889999999999999999999999999987 788999999999999999999999999999887 7889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcH
Q 041009          100 LHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQI  179 (434)
Q Consensus       100 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~  179 (434)
                      ||+|+..|+.+++++|+++++......+..|.||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..|+.
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999666678889999999999999999999999999999   889999999999999999999


Q ss_pred             HHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          180 EAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       180 ~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      +++++|+++|. +++..|..|.||+|+|+.    .+..+++++|.+.|++...
T Consensus       158 ~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~  205 (237)
T 3b7b_A          158 DIAEILLAAKC-DLHAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDVTL  205 (237)
T ss_dssp             HHHHHHHTTTC-CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCCCc
Confidence            99999999988 999999999999999999    6778999999999988644

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.6e-34  Score=276.87  Aligned_cols=220  Identities=23%  Similarity=0.230  Sum_probs=199.5

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      +||++.++.++...+.  +.+..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus        34 ~g~~~~v~~ll~~~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~L  110 (351)
T 3utm_A           34 SGNEEKLMALLTPLNV--NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELL  110 (351)
T ss_dssp             HTCHHHHHHHCCTTTT--TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCC--CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHH
Confidence            5899999999987543  34667889999999999999999999999999987 88899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccc-------------------------------------
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAAS-------------------------------------  124 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~-------------------------------------  124 (434)
                      ++.+++. +..|..|.||||+|+..|+.+++++|++++.++..                                     
T Consensus       111 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  189 (351)
T 3utm_A          111 LKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA  189 (351)
T ss_dssp             HHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhc
Confidence            9999987 78999999999999999999999999999877522                                     


Q ss_pred             ----------------cccCCCChHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009          125 ----------------ARLIWGETILHLCVKH---NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL  185 (434)
Q Consensus       125 ----------------~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L  185 (434)
                                      ..+..|.||||+|+..   +..+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|
T Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~L  266 (351)
T 3utm_A          190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN---VNEKNKDFMTPLHVAAERAHNDVMEVL  266 (351)
T ss_dssp             CHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence                            2345688999999999   558999999999999   899999999999999999999999999


Q ss_pred             hhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009          186 TTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       186 l~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~  233 (434)
                      +++|+ +++.+|..|.||||+|+.    .+..+++++|+++|++....
T Consensus       267 l~~ga-~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~~  309 (351)
T 3utm_A          267 HKHGA-KMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPSII  309 (351)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTCC
T ss_pred             HHCCC-CCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCCCc
Confidence            99988 999999999999999999    67789999999999986543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=269.86  Aligned_cols=219  Identities=21%  Similarity=0.200  Sum_probs=183.5

Q ss_pred             CCCChHHHHHHHhcCCC--------cccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHc
Q 041009            1 MAGSVNTLLELRQQDPL--------IVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQK   72 (434)
Q Consensus         1 ~~G~~~~v~~Ll~~~~~--------~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~   72 (434)
                      ++|+.+.+..++..++.        ....+..|..|.||||+||..|+.++++.|++.+.++ +..|..|.||||+|+..
T Consensus        24 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  102 (285)
T 3d9h_A           24 MDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLG  102 (285)
T ss_dssp             ------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHT
T ss_pred             hcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHC
Confidence            36787777776654322        0112456888999999999999999999999999886 88899999999999999


Q ss_pred             CCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 041009           73 GYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN  152 (434)
Q Consensus        73 g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  152 (434)
                      |+.+++++|++.+++. +..|.+|.||||+|+..|+.+++++|++++++.. . +.+|.||||+|+..|+.+++++|++.
T Consensus       103 g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~-~~~g~t~L~~A~~~g~~~~v~~Ll~~  179 (285)
T 3d9h_A          103 GHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-P-ESDLASPIHEAARRGHVECVNSLIAY  179 (285)
T ss_dssp             TCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-C-SCTTSCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC-C-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999887 7899999999999999999999999999998873 2 44599999999999999999999999


Q ss_pred             cCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       153 ~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      |++   ++.+|.+|+||||+|+..|+.+++++|++.|+ +++. |..|.||||+|+.    .+..+++++|++.|++...
T Consensus       180 g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~-~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~  250 (285)
T 3d9h_A          180 GGN---IDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQ-GKGQDSPLHAVVR----TASEELACLLMDFGADTQA  250 (285)
T ss_dssp             TCC---TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC-CTTC-CBTTBCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC-CCCC-CCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            998   89999999999999999999999999999987 8885 8999999999999    6778999999999988644

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-36  Score=277.10  Aligned_cols=201  Identities=23%  Similarity=0.262  Sum_probs=159.9

Q ss_pred             CCChHHHHHHHhcCCCccc-----ccccCCCCCCHHHHHHhcCCHH-HHHHHHhcCCchhhccCCCCCcHHHHHHHcCCH
Q 041009            2 AGSVNTLLELRQQDPLIVE-----RPTVNCLSETPLHVAALLGHED-FAKEILRQKPRIAEELDSRKSSALHIASQKGYV   75 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~-----~~~~~~~g~t~Lh~Aa~~g~~~-~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~   75 (434)
                      +||+++|+.|++.+.....     .+..+..|.||||.|+..++.+ +++.|++.|.++ +..|.+|+||||+|+..|+.
T Consensus        21 ~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~   99 (269)
T 4b93_B           21 DGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRA   99 (269)
T ss_dssp             TTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCCHHHHHHHTTCT
T ss_pred             cCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence            6999999999997764321     2445678999999999988764 889999999987 88899999999999999999


Q ss_pred             HHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009           76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD  155 (434)
Q Consensus        76 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  155 (434)
                      +++++|++.+++. +..+.+|.||+|.|+..++.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.|++
T Consensus       100 ~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad  177 (269)
T 4b93_B          100 DLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGAS  177 (269)
T ss_dssp             THHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC
T ss_pred             HHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            9999999999987 789999999999999999999999999999987 67789999999999999999999999999999


Q ss_pred             CccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       156 ~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                         +|.+|..|+||||+|+..|+.+++++|+++|+ |++.+|.+|+||||+|++
T Consensus       178 ---vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga-d~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          178 ---INASNNKGNTALHEAVIEKHVFVVELLLLHGA-SVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             ---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-CSCCCCTTSCCSGGGSCT
T ss_pred             ---CCccccCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHh
Confidence               89999999999999999999999999999988 999999999999999865

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=272.68  Aligned_cols=211  Identities=25%  Similarity=0.257  Sum_probs=190.2

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.+   .+..|.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus        69 ~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  144 (285)
T 3d9h_A           69 HGHQLSLRNLISQGWA---VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLL  144 (285)
T ss_dssp             TTCHHHHHHHHHTTCC---SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHH
Confidence            6899999999999865   3667889999999999999999999999999887 78899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      ++.+++. + .+.+|.||||+|+..|+.+++++|++++.+. +..|..|+||||+|+.+|+.+++++|++.|++   ++ 
T Consensus       145 l~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~-  217 (285)
T 3d9h_A          145 LQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD---VN-  217 (285)
T ss_dssp             HHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC---TT-
T ss_pred             HHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC---CC-
Confidence            9999887 3 3456999999999999999999999999987 67788999999999999999999999999998   66 


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHc-CCCc
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA-GAIS  230 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~-g~~~  230 (434)
                      .|..|+||||+|+..++.+++++|+++|+ +++.+|.+|+||+|+|+.      ..+++++|++. |++.
T Consensus       218 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~t~l~~A~~------~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          218 QGKGQDSPLHAVVRTASEELACLLMDFGA-DTQAKNAEGKRPVELVPP------ESPLAQLFLEREGASL  280 (285)
T ss_dssp             CCBTTBCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCGGGGSCT------TSHHHHHHHHHC----
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHhcC------ccHHHHHHHHhhccCC
Confidence            48899999999999999999999999988 999999999999999874      25788888887 6554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.5e-34  Score=258.68  Aligned_cols=197  Identities=27%  Similarity=0.288  Sum_probs=181.9

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhC--CCCCccCCCCCCCHHHHHHH
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI--PDKCSDTDVDGRNPLHLAAM  105 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpL~~Aa~  105 (434)
                      |+||||.||..|+.++++.|++.+++..+..|..|.||||+|+..|+.+++++|++.+  .+.....|..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            7899999999999999999999999987878999999999999999999999999998  55533388999999999999


Q ss_pred             hCCHHHHHHHHHhC--CcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHH
Q 041009          106 RGHIDVLEELARAK--PDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK  183 (434)
Q Consensus       106 ~g~~~~v~~Ll~~~--~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~  183 (434)
                      .|+.+++++|++++  ++. ...+..|.||||.|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+.++++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999998  555 66788899999999999999999999999999   8999999999999999999999999


Q ss_pred             HhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHH-HcCCCccc
Q 041009          184 LLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLR-RAGAISAQ  232 (434)
Q Consensus       184 ~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~-~~g~~~~~  232 (434)
                      +|++.+..+++.+|..|.||+|+|+.    .+..+++++|. +.|++...
T Consensus       158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~~  203 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDL  203 (228)
T ss_dssp             HHHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCC
T ss_pred             HHHhcCcccccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCCc
Confidence            99999955999999999999999999    67789999999 88988654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=259.71  Aligned_cols=216  Identities=25%  Similarity=0.220  Sum_probs=197.9

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.+.++.|++.+.++   +..+..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|
T Consensus        19 ~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L   95 (240)
T 3eu9_A           19 YGIYERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL   95 (240)
T ss_dssp             TTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred             cCChHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHH
Confidence            69999999999998553   567888999999999999999999999999998777777899999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCC-HHHHHHHHHhcCCCcccc
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQ-LEALKFLLENMGDSELLN  160 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-~~~v~~Ll~~~~~~~~~~  160 (434)
                      ++.+.+. +..|..|.||||.|+..|+.+++++|++++++. ...+..|.||||+|+..++ .+++++|++.+.+   ++
T Consensus        96 l~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~---~~  170 (240)
T 3eu9_A           96 MKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VN  170 (240)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC---TT
T ss_pred             HHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC---cc
Confidence            9999887 788999999999999999999999999999887 6778899999999997776 8999999999999   78


Q ss_pred             CCCC-CCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009          161 AKDD-YGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       161 ~~d~-~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                      ..+. .|+||||+|+..|+.+++++|+++|+ +++..|..|.||+|+|+.    .+..+++++|.++++..
T Consensus       171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~----~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGA-NVDAQNIKGESALDLAKQ----RKNVWMINHLQEARQAK  236 (240)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHHC---
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHhhhcc
Confidence            8886 89999999999999999999999987 999999999999999999    77789999999988765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-33  Score=263.77  Aligned_cols=218  Identities=25%  Similarity=0.236  Sum_probs=199.7

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.+.   +..|.+|.||||+|+..|+.++++.|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus        49 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L  124 (285)
T 1wdy_A           49 MSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFL  124 (285)
T ss_dssp             TTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHH
Confidence            58999999999998653   557888999999999999999999999999987 78899999999999999999999999


Q ss_pred             HhhCCCCCccC----------CCCCCCHHHHHHHhCCHHHHHHHHHh-CCcccccccCCCChHHHHHHHcCC----HHHH
Q 041009           82 LQVIPDKCSDT----------DVDGRNPLHLAAMRGHIDVLEELARA-KPDAASARLIWGETILHLCVKHNQ----LEAL  146 (434)
Q Consensus        82 l~~~~~~~~~~----------d~~g~tpL~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v  146 (434)
                      ++.+.+. +..          +..|.||||.|+..|+.+++++|+++ +.+. +..|..|+||||.|+..++    .+++
T Consensus       125 l~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~  202 (285)
T 1wdy_A          125 YKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAIT  202 (285)
T ss_dssp             HHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHH
T ss_pred             HHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHH
Confidence            9999887 444          78899999999999999999999998 5555 7778899999999999999    8999


Q ss_pred             HHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHc
Q 041009          147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA  226 (434)
Q Consensus       147 ~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~  226 (434)
                      ++|++.|++   ++.+|..|+||||+|+..|+.+++++|++..+.+++.+|.+|.||+|+|+.    .+..+++++|+++
T Consensus       203 ~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~----~~~~~i~~~Ll~~  275 (285)
T 1wdy_A          203 HLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKR  275 (285)
T ss_dssp             HHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHH
T ss_pred             HHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHH----cCcHHHHHHHHHc
Confidence            999999999   899999999999999999999999999995455999999999999999999    6778999999999


Q ss_pred             CCCccc
Q 041009          227 GAISAQ  232 (434)
Q Consensus       227 g~~~~~  232 (434)
                      |++...
T Consensus       276 Ga~~~~  281 (285)
T 1wdy_A          276 GASTDC  281 (285)
T ss_dssp             SSCSCC
T ss_pred             CCCCCc
Confidence            998643

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.8e-34  Score=260.59  Aligned_cols=214  Identities=20%  Similarity=0.222  Sum_probs=190.6

Q ss_pred             CCChHHHHHHHh----cCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHH
Q 041009            2 AGSVNTLLELRQ----QDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGI   77 (434)
Q Consensus         2 ~G~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i   77 (434)
                      .|++++++.|++    .+.+   .+..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.++
T Consensus        19 ~g~~~~v~~Ll~~~~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~   94 (241)
T 1k1a_A           19 QGNLPAVHRLVNLFQQGGRE---LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTC   94 (241)
T ss_dssp             TTCHHHHHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCC---CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence            689999999997    3433   3567889999999999999999999999999887 7789999999999999999999


Q ss_pred             HHHHHhhCCC---CCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcC
Q 041009           78 VKALLQVIPD---KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG  154 (434)
Q Consensus        78 v~~Ll~~~~~---~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  154 (434)
                      +++|++.++.   ..+..|..|.||||+|+..|+.+++++|++++++.....+..|.||||+|+++|+.+++++|+++|+
T Consensus        95 ~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  174 (241)
T 1k1a_A           95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA  174 (241)
T ss_dssp             HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999872   2377899999999999999999999999999999854443789999999999999999999999999


Q ss_pred             CCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcC
Q 041009          155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG  227 (434)
Q Consensus       155 ~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g  227 (434)
                      +   ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+.    .+..++++.|.+.+
T Consensus       175 ~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~----~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          175 N---VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMVARS----RRVIDILRGKATRP  239 (241)
T ss_dssp             C---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCTTTTCSS----HHHHHHHTC-----
T ss_pred             C---CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC-CCCCcCCCCCCHHHHHHh----cCcHHHHhhhccCC
Confidence            9   89999999999999999999999999999988 999999999999999987    66777877776544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.3e-35  Score=270.69  Aligned_cols=201  Identities=26%  Similarity=0.319  Sum_probs=180.5

Q ss_pred             ccCCCCCCHHHHHHhcCCHHHHHHHHhcCCc---hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCH
Q 041009           23 TVNCLSETPLHVAALLGHEDFAKEILRQKPR---IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP   99 (434)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp   99 (434)
                      .+|.+|.||||+|+..|+.++++.|++.+..   .++..|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence            4688899999999999999999999998764   35888999999999999999999999999999887 7899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCcc-----cccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCC-CCCcHHHHH
Q 041009          100 LHLAAMRGHIDVLEELARAKPDA-----ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDD-YGMTILHLA  173 (434)
Q Consensus       100 L~~Aa~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~LhlA  173 (434)
                      ||+|+..|+.+++++|++++++.     ....+..|.||||+|+.+|+.+++++|++.|++   ++.+|. .|+||||+|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLA  158 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCCHHHHH
Confidence            99999999999999999998642     466788899999999999999999999999999   888887 999999999


Q ss_pred             HHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          174 VADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       174 ~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      +..|+.+++++|+++|+ +++.+|..|.||+|+|+.    .+..+++++|.++|++...
T Consensus       159 ~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~~~  212 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKCGA-DVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLENLQ  212 (236)
T ss_dssp             HHTTCHHHHHHHHTTTC-CSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGGGS
T ss_pred             HHcCCHHHHHHHHHcCC-CCCcccCCCCCHHHHHHc----cCchHHHHHHHHcchhhhh
Confidence            99999999999999988 999999999999999988    6778999999999997643

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=9e-34  Score=251.66  Aligned_cols=194  Identities=23%  Similarity=0.296  Sum_probs=180.4

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  104 (434)
                      +..+.||||.|+..|+.+.++.|++.++..++..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            3568999999999999999999999998556889999999999999999999999999999988 789999999999999


Q ss_pred             HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhc-CCCccccCCCCCCCcHHHHHHHcCc-----
Q 041009          105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENM-GDSELLNAKDDYGMTILHLAVADKQ-----  178 (434)
Q Consensus       105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~~~d~~g~t~LhlA~~~~~-----  178 (434)
                      ..|+.+++++|++.+.......+..|.||||+|+.+|+.+++++|++.| .+   ++.+|..|+||||+|+..++     
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~~~~~~~  157 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTALIEAVGLREGNQLY  157 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC---TTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCCCCHHHHHHHhccchhhH
Confidence            9999999999997766556788899999999999999999999999999 66   89999999999999999987     


Q ss_pred             HHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcC
Q 041009          179 IEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG  227 (434)
Q Consensus       179 ~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g  227 (434)
                      .+++++|+++|+ +++.+|..|.||+|+|+.    .+..+++++|.++|
T Consensus       158 ~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          158 QDIVKLLMENGA-DQSIKDNSGRTAMDYANQ----KGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCC-CCCccCCCCCCHHHHHHH----cCCHhHHHHHHhcC
Confidence            999999999988 999999999999999999    67789999999876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4e-34  Score=277.98  Aligned_cols=216  Identities=17%  Similarity=0.143  Sum_probs=196.0

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|++++++.|++.+.+   .+..|..|.||||+||..|+.+++++|++++++.   .+..|.||||+|+..|+.+++++|
T Consensus        30 ~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g~~~~v~~L  103 (364)
T 3ljn_A           30 KGQTDEVRRLIETGVS---PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVAL  103 (364)
T ss_dssp             HTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC---ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcCCHHHHHHH
Confidence            5899999999999855   3667899999999999999999999999999954   345899999999999999999999


Q ss_pred             Hhh----CCCCCcc-----------------CCCCCCCHHHHHHHhC--CHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 041009           82 LQV----IPDKCSD-----------------TDVDGRNPLHLAAMRG--HIDVLEELARAKPDAASARLIWGETILHLCV  138 (434)
Q Consensus        82 l~~----~~~~~~~-----------------~d~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  138 (434)
                      ++.    +.+. +.                 .|..|.||||+|+..|  +.+++++|++++.++ +..|..|+||||+|+
T Consensus       104 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~  181 (364)
T 3ljn_A          104 VEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAM  181 (364)
T ss_dssp             HHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHH
T ss_pred             HHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence            998    6655 33                 7889999999999999  999999999999887 677889999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCc--cccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCch
Q 041009          139 KHNQLEALKFLLENMGDSE--LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKD  216 (434)
Q Consensus       139 ~~g~~~~v~~Ll~~~~~~~--~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~  216 (434)
                      .+|+.+++++|++.|++..  .++.+|..|+||||+|+..|+.+++++|+++|+ +++..|.+|.||||+|+.    .+.
T Consensus       182 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~----~g~  256 (364)
T 3ljn_A          182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI-DVNMEDNEHTVPLYLSVR----AAM  256 (364)
T ss_dssp             HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC-CTTCCCTTSCCHHHHHHH----TCC
T ss_pred             HcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHH----hCh
Confidence            9999999999999987621  267889999999999999999999999999988 999999999999999999    778


Q ss_pred             hHHHHHHHHcCCCc
Q 041009          217 WDIGELLRRAGAIS  230 (434)
Q Consensus       217 ~~i~~~L~~~g~~~  230 (434)
                      .+++++|++.|+..
T Consensus       257 ~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          257 VLLTKELLQKTDVF  270 (364)
T ss_dssp             HHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHcCCch
Confidence            99999999998764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-33  Score=280.29  Aligned_cols=218  Identities=28%  Similarity=0.312  Sum_probs=161.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.+.   +..+..|.||||+|+..|+.+++++|++++.+. +..+..|.||||+|+..|+.+++++|
T Consensus       156 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L  231 (437)
T 1n11_A          156 YGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSL  231 (437)
T ss_dssp             TTCHHHHHHHHHTTCCT---TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            35666666666665432   445566667777777777777777777766665 55566677777777777777777777


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      ++.+.+. +..+..|.||||+|+..|+.+++++|++++++. +..+..|.||||+|++.|+.+++++|+++|.+   ++.
T Consensus       232 l~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~  306 (437)
T 1n11_A          232 LQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDA  306 (437)
T ss_dssp             HHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTC
T ss_pred             HHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc---CCC
Confidence            7776665 566777777777777777777777777777766 55567788888888888888888888888777   777


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~  233 (434)
                      +|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+.    .+..+++++|+++|++....
T Consensus       307 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-d~n~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~~~  373 (437)
T 1n11_A          307 TTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPNEV  373 (437)
T ss_dssp             CCSSCCCHHHHHHHSSCSHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCCC
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHH----CChHHHHHHHHHCcCCCCCC
Confidence            88888888888888888888888888877 888888888888888887    56678888888888876543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.9e-33  Score=270.22  Aligned_cols=219  Identities=26%  Similarity=0.264  Sum_probs=191.0

Q ss_pred             CCChHHHHHHHhcCCCcccccccC-CCCCCHHHHHHhcCCHHHHHHHHhcCCch--------------------------
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVN-CLSETPLHVAALLGHEDFAKEILRQKPRI--------------------------   54 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--------------------------   54 (434)
                      +||+++|+.||+.+.++   +.++ ..|.||||+||..|+.++|+.|+++|+++                          
T Consensus        35 ~g~~~~V~~LL~~Gadv---n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (337)
T 4g8k_A           35 NEDVDLVQQLLEGGANV---NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF  111 (337)
T ss_dssp             TTCHHHHHHHHHHTCCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC---CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHh
Confidence            69999999999999664   4444 45999999999999999999999988753                          


Q ss_pred             ------hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCC---------ccCCCCCCCHHHHHHHhCCHHHHHHHHHh-
Q 041009           55 ------AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC---------SDTDVDGRNPLHLAAMRGHIDVLEELARA-  118 (434)
Q Consensus        55 ------~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~-  118 (434)
                            ++..|..|.||||+|+..|+.+++++|++.+++..         ...+..|.||||+|+..|+.+++++|+++ 
T Consensus       112 ~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~  191 (337)
T 4g8k_A          112 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  191 (337)
T ss_dssp             HTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHS
T ss_pred             hhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhcc
Confidence                  35568899999999999999999999999988752         12456789999999999999999999975 


Q ss_pred             CCcccccccCCCChHHHHHHHcCC----HHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccccc
Q 041009          119 KPDAASARLIWGETILHLCVKHNQ----LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVN  194 (434)
Q Consensus       119 ~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~  194 (434)
                      +.++ +..|..|.|++|.++..+.    .+++++|+++|++   ++.+|.+|+||||+|+..|+.++++.|++.++.+++
T Consensus       192 gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad---~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn  267 (337)
T 4g8k_A          192 GADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  267 (337)
T ss_dssp             CCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC---TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT
T ss_pred             CCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc
Confidence            5555 7778899999998876554    4588999999999   899999999999999999999999999998777999


Q ss_pred             ccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcc
Q 041009          195 AVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISA  231 (434)
Q Consensus       195 ~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~  231 (434)
                      .+|.+|+||||+|+.    .+..+++++|+++|++..
T Consensus       268 ~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          268 DTDSDGKTALLLAVE----LKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             CBCTTSCBHHHHHHH----TTCHHHHHHHHTTSCSST
T ss_pred             CcCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            999999999999999    677899999999998763

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.5e-33  Score=254.33  Aligned_cols=198  Identities=28%  Similarity=0.317  Sum_probs=186.5

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  104 (434)
                      +..+++|||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHH
Confidence            3458899999999999999999999998888889999999999999999999999999999887 789999999999999


Q ss_pred             HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009          105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL  184 (434)
Q Consensus       105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~  184 (434)
                      ..|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|++.|.+   ++.+|..|.||||+|+..|+.+++++
T Consensus        82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~  157 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHI  157 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            999999999999999887 66788899999999999999999999999998   88999999999999999999999999


Q ss_pred             hhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          185 LTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       185 Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      |++++. +++.+|..|.||+|+|+.    .+..+++++|++.|++...
T Consensus       158 Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  200 (231)
T 3aji_A          158 LLFYKA-STNIQDTEGNTPLHLACD----EERVEEAKFLVTQGASIYI  200 (231)
T ss_dssp             HHHTTC-CSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             HHhcCC-CccccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCCCC
Confidence            999988 999999999999999999    6778999999999988643

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.7e-34  Score=268.90  Aligned_cols=212  Identities=16%  Similarity=0.112  Sum_probs=189.8

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      +++.+.+..++..+.    .+..|.+|.||||+|+..|+.++++.|+++++++ +..  +|.||||+|+..|+.+++++|
T Consensus         9 ~~~~~~v~~lL~~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            9 TWKSKQLKSFLSSKD----TFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GCCHHHHHHHHHSTT----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred             hcCHHHHHHHHHhCC----CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHH
Confidence            356677777776652    3567899999999999999999999999999887 444  499999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCC-ChHHHHHHHcCCHHHHHHHHHhcCCCcccc
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG-ETILHLCVKHNQLEALKFLLENMGDSELLN  160 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  160 (434)
                      ++.++++ +.+|..|.||||+|+..|+.+++++|+++++++ ...+..| .||||+|+.+|+.+++++|+++|++   . 
T Consensus        82 l~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~---~-  155 (285)
T 3kea_A           82 LFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---T-  155 (285)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT---T-
T ss_pred             HHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc---c-
Confidence            9999987 789999999999999999999999999999987 6677778 8999999999999999999999887   2 


Q ss_pred             CCCC-CCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCH-HHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          161 AKDD-YGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA-WDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       161 ~~d~-~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~-l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                       .|. .|+||||+|+..|+.+++++|+++|+ +++.+|..|.|| +|+|+.    .+..+++++|+++|++...
T Consensus       156 -~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-d~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          156 -FDLAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             -CCCSTHHHHHHHHHHTTCHHHHHHHHHHHH-HTCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCBCSTT
T ss_pred             -ccccCCccHHHHHHHcChHHHHHHHHHcCC-CCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence             233 89999999999999999999999988 999999999998 999999    6678999999999998654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-34  Score=271.43  Aligned_cols=199  Identities=26%  Similarity=0.319  Sum_probs=145.8

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+++.++.|++.+.++   +..|..|.||||+||..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus        50 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~L  125 (299)
T 1s70_B           50 SGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYL  125 (299)
T ss_dssp             HTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence            47777777777777543   456677778888888777888888887777776 66677777888888777777788877


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcc--------------------------cccccCCCChHHH
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA--------------------------ASARLIWGETILH  135 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~--------------------------~~~~~~~g~t~Lh  135 (434)
                      ++++++. +..|..|.||||+|+..|+.++++.++......                          ....+..|.||||
T Consensus       126 l~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~  204 (299)
T 1s70_B          126 ISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH  204 (299)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH
T ss_pred             HhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHH
Confidence            7777766 667777778888777777777777665432211                          1223456777888


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          136 LCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       136 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      +|+.+|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..|+||+|+|.+
T Consensus       205 ~A~~~g~~~~v~~Ll~~g~d---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          205 VAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             HHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCTTTSCCS
T ss_pred             HHHHCCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH
Confidence            88888888888888877777   67777778888888888888888888877776 777777788888877743

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-34  Score=279.70  Aligned_cols=216  Identities=20%  Similarity=0.281  Sum_probs=192.6

Q ss_pred             CCChHHHHHHH--------hcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC
Q 041009            2 AGSVNTLLELR--------QQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG   73 (434)
Q Consensus         2 ~G~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g   73 (434)
                      .|+.++++.|+        +.+.+   .+..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|
T Consensus       135 ~g~~~~v~~Ll~~~~~~ll~~ga~---vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g  210 (373)
T 2fo1_E          135 NSSAEKSEDLIVHEAKECIAAGAD---VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANR  210 (373)
T ss_dssp             TTCCSCCTTHHHHHHHHHHHTCCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCC---CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCC
Confidence            46666666655        66644   3667899999999999999999999999999987 788999999999999999


Q ss_pred             CHHHHHHHHhhC---CCCCccCCCCCCCHHHHHHHhC---CHHHHHHHHHhCCcccc-------cccCCCChHHHHHHHc
Q 041009           74 YVGIVKALLQVI---PDKCSDTDVDGRNPLHLAAMRG---HIDVLEELARAKPDAAS-------ARLIWGETILHLCVKH  140 (434)
Q Consensus        74 ~~~iv~~Ll~~~---~~~~~~~d~~g~tpL~~Aa~~g---~~~~v~~Ll~~~~~~~~-------~~~~~g~t~Lh~A~~~  140 (434)
                      +.+++++|++.+   .+. +..|..|.||||+|+..|   +.+++++|++++++...       ..|..|.||||+|+.+
T Consensus       211 ~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~  289 (373)
T 2fo1_E          211 DFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV  289 (373)
T ss_dssp             CHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSS
T ss_pred             CHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHh
Confidence            999999999987   455 778999999999999998   89999999999988743       3567899999999999


Q ss_pred             CCHHHHHHHHHhc-CCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHH
Q 041009          141 NQLEALKFLLENM-GDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDI  219 (434)
Q Consensus       141 g~~~~v~~Ll~~~-~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i  219 (434)
                      |+.+++++|++.+ ++   ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+.    .++.++
T Consensus       290 g~~~~v~~Ll~~~~~~---~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-d~~~~d~~g~t~l~~A~~----~g~~~i  361 (373)
T 2fo1_E          290 SNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-SVEAVDATDHTARQLAQA----NNHHNI  361 (373)
T ss_dssp             CCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSSCCCSSSCCHHHHHHH----TTCHHH
T ss_pred             CCHHHHHHHHHhcCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccCCCCCCCCHHHHHHH----cCCHHH
Confidence            9999999999987 77   89999999999999999999999999999988 999999999999999999    778999


Q ss_pred             HHHHHHcCCCc
Q 041009          220 GELLRRAGAIS  230 (434)
Q Consensus       220 ~~~L~~~g~~~  230 (434)
                      +++|.++|++.
T Consensus       362 v~~Ll~~~a~~  372 (373)
T 2fo1_E          362 VDIFDRCRPER  372 (373)
T ss_dssp             HHHHHTTC---
T ss_pred             HHHHHhcCccc
Confidence            99999988753

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.8e-33  Score=275.09  Aligned_cols=218  Identities=28%  Similarity=0.398  Sum_probs=201.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+++++++|++.+.+.   +..|..|.||||+||..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus        24 ~g~~~~v~~Ll~~g~~~---~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~L   99 (437)
T 1n11_A           24 MGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLL   99 (437)
T ss_dssp             HTCHHHHHHHHHTTCCS---CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            48999999999998553   567888999999999999999999999999987 78899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      +++++++ +..|..|.||||+|+..|+.++++.|++++.+. ...+..|.||||+|+.+|+.+++++|+++|++   ++.
T Consensus       100 l~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~  174 (437)
T 1n11_A          100 LENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNA  174 (437)
T ss_dssp             HHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTC
T ss_pred             HhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCC
Confidence            9999987 789999999999999999999999999998876 56678899999999999999999999999998   889


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~  233 (434)
                      .|..|.||||+|+..++.+++++|++++. +++..+.+|.||+|+|+.    .+..+++++|.+.|+.....
T Consensus       175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~~~  241 (437)
T 1n11_A          175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAK----QNQVEVARSLLQYGGSANAE  241 (437)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTC-CSCCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999988 899999999999999999    67789999999999875543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.3e-32  Score=264.99  Aligned_cols=211  Identities=21%  Similarity=0.243  Sum_probs=189.0

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.++   +..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus        68 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  143 (351)
T 3utm_A           68 YNRVRIVQLLLQHGADV---HAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLL  143 (351)
T ss_dssp             TTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            58999999999998653   667889999999999999999999999999987 78899999999999999999999999


Q ss_pred             HhhCCCCCcc------------------------------------------------------CCCCCCCHHHHHHHh-
Q 041009           82 LQVIPDKCSD------------------------------------------------------TDVDGRNPLHLAAMR-  106 (434)
Q Consensus        82 l~~~~~~~~~------------------------------------------------------~d~~g~tpL~~Aa~~-  106 (434)
                      ++++++. +.                                                      .+..|.||||+|+.. 
T Consensus       144 l~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~  222 (351)
T 3utm_A          144 LSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL  222 (351)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCC
T ss_pred             HHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHh
Confidence            9998875 32                                                      345678999999999 


Q ss_pred             --CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009          107 --GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL  184 (434)
Q Consensus       107 --g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~  184 (434)
                        +..+++++|++++.+. +.+|.+|+||||+|+++|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++
T Consensus       223 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~A~~~~~~~~v~~  298 (351)
T 3utm_A          223 HPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRL  298 (351)
T ss_dssp             STTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence              5589999999999987 67788999999999999999999999999999   89999999999999999999999999


Q ss_pred             hhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009          185 LTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       185 Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                      |+++|+ +++.+|..|.||+|+|.        .++.++|.+.+...
T Consensus       299 Ll~~ga-d~~~~~~~g~tal~~a~--------~~~~~~l~~~~~~~  335 (351)
T 3utm_A          299 LLSYGS-DPSIISLQGFTAAQMGN--------EAVQQILSESTPMR  335 (351)
T ss_dssp             HHHTTC-CTTCCCTTSCCHHHHSC--------HHHHHHHHHC----
T ss_pred             HHHcCC-CCCCcCCCCCChhhhhh--------HHHHHHHHhccccc
Confidence            999988 99999999999999874        36778888766543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=9.5e-34  Score=261.56  Aligned_cols=196  Identities=22%  Similarity=0.252  Sum_probs=175.0

Q ss_pred             CCCCHHHHHHhcCCHH----HHHHHHhcCCchhhc----cCCCCCcHHHHHHHc---CCHHHHHHHHhhCCCCCc-----
Q 041009           27 LSETPLHVAALLGHED----FAKEILRQKPRIAEE----LDSRKSSALHIASQK---GYVGIVKALLQVIPDKCS-----   90 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~----~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~-----   90 (434)
                      +|+||||.||..|+.+    ++++|++.+.++ +.    .|..|+||||+|+..   |+.+++++|++.+++...     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            4889999999999997    567777788887 55    799999999999999   999999999999776521     


Q ss_pred             -----cCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCC-------------CChHHHHHHHcCCHHHHHHHHH-
Q 041009           91 -----DTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIW-------------GETILHLCVKHNQLEALKFLLE-  151 (434)
Q Consensus        91 -----~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~Lh~A~~~g~~~~v~~Ll~-  151 (434)
                           ..|..|.||||+|+..|+.+++++|+++++++ +..+..             |+||||+|+.+|+.+++++|++ 
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                 23578999999999999999999999999987 444544             9999999999999999999999 


Q ss_pred             --hcCCCccccCCCCCCCcHHHHHHH--cCcHH-------HHHHhhhcccccc-------cccccCCCCHHHHHHHccCC
Q 041009          152 --NMGDSELLNAKDDYGMTILHLAVA--DKQIE-------AIKLLTTSTAIEV-------NAVTANGFTAWDILAQSKRD  213 (434)
Q Consensus       152 --~~~~~~~~~~~d~~g~t~LhlA~~--~~~~~-------iv~~Ll~~~~~~~-------~~~n~~g~t~l~la~~~~~~  213 (434)
                        .|++   ++.+|.+|+||||+|+.  .++.+       ++++|+++|+ ++       +.+|.+|.||+|+|+.    
T Consensus       159 ~~~ga~---~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga-~~~~~~~~~~~~d~~g~tpL~~A~~----  230 (256)
T 2etb_A          159 PHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA-RLCPTVQLEEISNHQGLTPLKLAAK----  230 (256)
T ss_dssp             SSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH-HHSTTCCGGGCCCTTSCCHHHHHHH----
T ss_pred             cccCCC---cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC-CcccccccccccCCCCCCHHHHHHH----
Confidence              8998   89999999999999999  78888       9999999988 88       9999999999999999    


Q ss_pred             CchhHHHHHHHHcCCCccc
Q 041009          214 TKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       214 ~~~~~i~~~L~~~g~~~~~  232 (434)
                      .+..+++++|+++|.....
T Consensus       231 ~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          231 EGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHhCCCCCCC
Confidence            7778999999999877543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.9e-33  Score=261.94  Aligned_cols=223  Identities=22%  Similarity=0.177  Sum_probs=191.0

Q ss_pred             CChHHHHHHHhcCCCccc------ccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHH
Q 041009            3 GSVNTLLELRQQDPLIVE------RPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVG   76 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~------~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~   76 (434)
                      |..+.++.++........      ....+..|.||||.||..|+.++++.|+++++++ +..|..|.||||+|+..|+.+
T Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~   87 (299)
T 1s70_B            9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVD   87 (299)
T ss_dssp             HHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHH
Confidence            445677777776543211      1123446789999999999999999999999987 788999999999999999999


Q ss_pred             HHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcC-C
Q 041009           77 IVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG-D  155 (434)
Q Consensus        77 iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~  155 (434)
                      ++++|++.++++ +..|..|.||||+|+..|+.+++++|+++++++ ...+.+|.||||+|+..++.++++.++.... +
T Consensus        88 ~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~  165 (299)
T 1s70_B           88 MVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD  165 (299)
T ss_dssp             HHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCC
Confidence            999999999987 789999999999999999999999999999987 6678899999999999999999988775432 2


Q ss_pred             C-----------------------ccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccC
Q 041009          156 S-----------------------ELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR  212 (434)
Q Consensus       156 ~-----------------------~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~  212 (434)
                      .                       ......+..|.||||+|+..|+.+++++|+++|. +++.+|.+|.||||+|+.   
T Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-d~~~~d~~g~tpL~~A~~---  241 (299)
T 1s70_B          166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAH---  241 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHH---
T ss_pred             chhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHh---
Confidence            0                       0123467789999999999999999999999987 999999999999999999   


Q ss_pred             CCchhHHHHHHHHcCCCcccc
Q 041009          213 DTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       213 ~~~~~~i~~~L~~~g~~~~~~  233 (434)
                       .+..+++++|+++|++....
T Consensus       242 -~~~~~~v~~Ll~~gad~~~~  261 (299)
T 1s70_B          242 -WGKEEACRILVENLCDMEAV  261 (299)
T ss_dssp             -TTCHHHHHHHHHTTCCTTCC
T ss_pred             -cCCHHHHHHHHHcCCCCCCc
Confidence             67789999999999986543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.4e-32  Score=234.88  Aligned_cols=158  Identities=32%  Similarity=0.400  Sum_probs=144.5

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH
Q 041009           30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (434)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  109 (434)
                      ++|+.||..|+.++|+.|+++|+++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            4799999999999999999999987 888999999999999999999999999999987 78999999999999999999


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcc
Q 041009          110 DVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST  189 (434)
Q Consensus       110 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~  189 (434)
                      +++++|+++++++ +.+|.+|+||||+|+++|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus        84 ~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           84 EVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999987 67788999999999999999999999999999   8899999999999999999999999999999


Q ss_pred             ccccc
Q 041009          190 AIEVN  194 (434)
Q Consensus       190 ~~~~~  194 (434)
                      + +++
T Consensus       160 A-~ie  163 (169)
T 4gpm_A          160 G-WLE  163 (169)
T ss_dssp             -----
T ss_pred             C-CcC
Confidence            8 554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1e-32  Score=267.97  Aligned_cols=201  Identities=23%  Similarity=0.239  Sum_probs=181.4

Q ss_pred             cccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCH
Q 041009           20 ERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP   99 (434)
Q Consensus        20 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp   99 (434)
                      +.+..|..|.||||+||..|+.++|++|++++.++ +..|..|.||||+|+..|+.+++++|++.+++.   .+.+|.||
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~   87 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKP   87 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCH
Confidence            34556788999999999999999999999999887 888999999999999999999999999999854   44689999


Q ss_pred             HHHHHHhCCHHHHHHHHHh----CCcccc----------------cccCCCChHHHHHHHcC--CHHHHHHHHHhcCCCc
Q 041009          100 LHLAAMRGHIDVLEELARA----KPDAAS----------------ARLIWGETILHLCVKHN--QLEALKFLLENMGDSE  157 (434)
Q Consensus       100 L~~Aa~~g~~~~v~~Ll~~----~~~~~~----------------~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~  157 (434)
                      ||+|+..|+.+++++|++.    +.+...                ..|..|.||||+|+..|  +.+++++|++.|++  
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~--  165 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS--  165 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC--
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC--
Confidence            9999999999999999998    665522                16778999999999999  99999999999999  


Q ss_pred             cccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccc-----ccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          158 LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIE-----VNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       158 ~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~-----~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                       ++.+|..|+||||+|+..|+.+++++|+++++ +     ++..|..|.||||+|+.    .+..+++++|+++|++...
T Consensus       166 -~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~~~  239 (364)
T 3ljn_A          166 -PTAKDKADETPLMRAMEFRNREALDLMMDTVP-SKSSLRLDYANKQGNSHLHWAIL----INWEDVAMRFVEMGIDVNM  239 (364)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS-CSSSCCTTCCCTTCCCTTHHHHT----TTCHHHHHHHHTTTCCTTC
T ss_pred             -CcccCCCCCCHHHHHHHcCCHHHHHHHHhccc-ccccccccccCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence             89999999999999999999999999999887 6     99999999999999998    7778999999999988644

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=256.24  Aligned_cols=201  Identities=24%  Similarity=0.195  Sum_probs=158.4

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhcCCch-------hhccCCCCCcHHHHHHHcCCH-HHHHHHHhhCCCCCccCCCC
Q 041009           24 VNCLSETPLHVAALLGHEDFAKEILRQKPRI-------AEELDSRKSSALHIASQKGYV-GIVKALLQVIPDKCSDTDVD   95 (434)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~tpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~d~~   95 (434)
                      .|..+.+||+.||..|+.++|+.|++.+++.       .+..|..|.||||.|+..++. ++++.|++.|.++ +.+|.+
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~   85 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQD   85 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCC
Confidence            4666789999999999999999999988753       355678899999999988875 5889999999987 889999


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHH
Q 041009           96 GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA  175 (434)
Q Consensus        96 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~  175 (434)
                      |+||||+|+..|+.+++++|++.+++. ...+.+|.||+|.|+..++.+++++|++.|++   ++.+|.+|+||||+|+.
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~---~n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK---PNKKDLSGNTPLIYACS  161 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHH
Confidence            999999999999999999999999987 66788899999999999999999999999999   89999999999999999


Q ss_pred             cCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccccC
Q 041009          176 DKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDL  234 (434)
Q Consensus       176 ~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~~  234 (434)
                      .|+.+++++|+++|+ ++|..|..|.||||+|+.    .+..+++++|+++|++.....
T Consensus       162 ~g~~~~v~~Ll~~ga-dvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~~~~d  215 (269)
T 4b93_B          162 GGHHELVALLLQHGA-SINASNNKGNTALHEAVI----EKHVFVVELLLLHGASVQVLN  215 (269)
T ss_dssp             TTCGGGHHHHHHTTC-CTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCSCCCC
T ss_pred             CCCHHHHHHHHHCCC-CCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCCCCcC
Confidence            999999999999988 999999999999999999    777899999999999865443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=7.5e-33  Score=258.10  Aligned_cols=199  Identities=21%  Similarity=0.255  Sum_probs=172.6

Q ss_pred             cccCCCCCCHHHHHHhcCCHHHHHHHHhc----CCchhh---ccCCCCCcHHHHHHHc---CCHHHHHHHHhhCCCCC--
Q 041009           22 PTVNCLSETPLHVAALLGHEDFAKEILRQ----KPRIAE---ELDSRKSSALHIASQK---GYVGIVKALLQVIPDKC--   89 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~----~~~~~~---~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~--   89 (434)
                      +..|.+|.||||.||..|+.++|+.|++.    +.++..   ..|..|+||||+|+..   |+.+++++|++.+++..  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            44688899999999999999999999874    443321   4588999999999987   99999999999875421  


Q ss_pred             --------ccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccC--------------CCChHHHHHHHcCCHHHHH
Q 041009           90 --------SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI--------------WGETILHLCVKHNQLEALK  147 (434)
Q Consensus        90 --------~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~Lh~A~~~g~~~~v~  147 (434)
                              ...|..|.||||+|+..|+.+++++|+++++++ +..+.              .|+||||+|+.+|+.++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence                    225678999999999999999999999999987 44454              7999999999999999999


Q ss_pred             HHHH---hcCCCccccCCCCCCCcHHHHHHHcCc---------HHHHHHhhhccccccc-------ccccCCCCHHHHHH
Q 041009          148 FLLE---NMGDSELLNAKDDYGMTILHLAVADKQ---------IEAIKLLTTSTAIEVN-------AVTANGFTAWDILA  208 (434)
Q Consensus       148 ~Ll~---~~~~~~~~~~~d~~g~t~LhlA~~~~~---------~~iv~~Ll~~~~~~~~-------~~n~~g~t~l~la~  208 (434)
                      +|++   .|++   ++.+|.+|+||||+|+..|+         .+++++|+++|+ +++       .+|.+|.||||+|+
T Consensus       166 ~Ll~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga-~~n~~~~~~~~~d~~g~TpL~~A~  241 (273)
T 2pnn_A          166 FLLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA-KLHPTLKLEEITNRKGLTPLALAA  241 (273)
T ss_dssp             HHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH-HHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHhcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh-hcccccccccccCCCCCCHHHHHH
Confidence            9999   8888   89999999999999999888         799999999988 886       58999999999999


Q ss_pred             HccCCCchhHHHHHHHHcCCC
Q 041009          209 QSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       209 ~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      .    .+..+++++|+++|+.
T Consensus       242 ~----~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          242 S----SGKIGVLAYILQREIH  258 (273)
T ss_dssp             H----TTCHHHHHHHHHHHTC
T ss_pred             H----hChHHHHHHHHHCCCC
Confidence            9    7779999999999995

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=2.5e-31  Score=235.88  Aligned_cols=182  Identities=24%  Similarity=0.258  Sum_probs=168.0

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.+.++.|+++++..  .+..|.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus        15 ~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L   91 (201)
T 3hra_A           15 QRDTKKVKEILQDTTYQ--VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYM   91 (201)
T ss_dssp             TTCHHHHHHHHTCTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hccHHHHHHHHHcCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            68999999999988732  3567889999999999999999999999999987 78899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCC-----HHHHHHHHHhcCCC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQ-----LEALKFLLENMGDS  156 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~~~  156 (434)
                      ++.++...+..|..|.||||+|+..|+.+++++|+++++...+..|..|+||||+|+..++     .+++++|++.|++ 
T Consensus        92 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-  170 (201)
T 3hra_A           92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-  170 (201)
T ss_dssp             HHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-
T ss_pred             HhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-
Confidence            9776655588999999999999999999999999999955557889999999999999998     9999999999999 


Q ss_pred             ccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcc
Q 041009          157 ELLNAKDDYGMTILHLAVADKQIEAIKLLTTST  189 (434)
Q Consensus       157 ~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~  189 (434)
                        ++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus       171 --~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          171 --QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             --TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             --CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence              8899999999999999999999999999875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=2.5e-32  Score=256.42  Aligned_cols=207  Identities=18%  Similarity=0.212  Sum_probs=186.0

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.++   +..  +|.||||+|+..|+.++++.|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus        41 ~g~~~~v~~Ll~~g~~~---~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~L  114 (285)
T 3kea_A           41 DNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLF  114 (285)
T ss_dssp             TTCHHHHHHHHHTTGGG---SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCC---CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            68999999999998653   333  4999999999999999999999999997 78899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCC-CCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCcccc
Q 041009           82 LQVIPDKCSDTDVDG-RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLN  160 (434)
Q Consensus        82 l~~~~~~~~~~d~~g-~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  160 (434)
                      ++.++++ +..|..| .||||+|+..|+.+++++|++++++....  ..|.||||+|+.+|+.+++++|+++|++   ++
T Consensus       115 l~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad---~n  188 (285)
T 3kea_A          115 VKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTS---TN  188 (285)
T ss_dssp             HHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--STHHHHHHHHHHTTCHHHHHHHHHHHHH---TC
T ss_pred             HhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--cCCccHHHHHHHcChHHHHHHHHHcCCC---CC
Confidence            9999987 7889999 79999999999999999999999876222  2799999999999999999999999999   89


Q ss_pred             CCCCCCCcH-HHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          161 AKDDYGMTI-LHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       161 ~~d~~g~t~-LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      .+|..|+|| ||+|+..|+.+++++|+++|+ +++..|..       ++.    .+..+++++|+++|++...
T Consensus       189 ~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga-d~~~~~~~-------a~~----~~~~~iv~~Ll~~g~~~~~  249 (285)
T 3kea_A          189 TNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-NIYSANLE-------NVL----LDDAEIAKMIIEKHVEYKS  249 (285)
T ss_dssp             TTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB-CSTTTTGG-------GGT----TTCHHHHHHHHHHHHHHTT
T ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCChh-------hhh----cCCHHHHHHHHHcCCCCCC
Confidence            999999998 999999999999999999988 99988842       233    5678999999999987543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.98  E-value=3.9e-32  Score=264.98  Aligned_cols=204  Identities=18%  Similarity=0.201  Sum_probs=182.2

Q ss_pred             cccC-CCCCCHHHHHHhcCCHHHHHHHH--------hcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccC
Q 041009           22 PTVN-CLSETPLHVAALLGHEDFAKEIL--------RQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT   92 (434)
Q Consensus        22 ~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~   92 (434)
                      +..| .+|.||||+||..|+.++++.|+        +.+.++ +..|..|.||||+|+..|+.+++++|++.++++ +..
T Consensus       118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~  195 (373)
T 2fo1_E          118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIY  195 (373)
T ss_dssp             TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCC
T ss_pred             cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-ccc
Confidence            3345 67999999999999998888776        678776 888999999999999999999999999999988 789


Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhC---CcccccccCCCChHHHHHHHcC---CHHHHHHHHHhcCCCcc-----ccC
Q 041009           93 DVDGRNPLHLAAMRGHIDVLEELARAK---PDAASARLIWGETILHLCVKHN---QLEALKFLLENMGDSEL-----LNA  161 (434)
Q Consensus        93 d~~g~tpL~~Aa~~g~~~~v~~Ll~~~---~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~-----~~~  161 (434)
                      |..|.||||+|+..|+.+++++|++++   .+. ...|.+|.||||+|+..+   +.+++++|++.|++.+.     .+.
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  274 (373)
T 2fo1_E          196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  274 (373)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCc
Confidence            999999999999999999999999976   344 667889999999999998   89999999999998332     223


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      +|..|+||||+|+..|+.+++++|+++++.+++.+|.+|.||||+|+.    .+..+++++|+++|++...
T Consensus       275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ----EGRIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSC
T ss_pred             ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCccC
Confidence            788999999999999999999999999866999999999999999999    6678999999999998644

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=3.2e-31  Score=240.71  Aligned_cols=185  Identities=25%  Similarity=0.307  Sum_probs=165.0

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchh----hccCCCCCcHHHHHHHcCCHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIA----EELDSRKSSALHIASQKGYVGI   77 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~g~tpLh~Aa~~g~~~i   77 (434)
                      .|+.+.++.|++...  .+.+..|.+|.||||+|+..|+.++++.|++.+++..    +..|..|.||||+|+..|+.++
T Consensus        13 ~g~~~~v~~Ll~~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~   90 (232)
T 2rfa_A           13 ENDVQALSKLLKFEG--CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNL   90 (232)
T ss_dssp             TTCHHHHHHHHTTTC--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHhcC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHH
Confidence            689999999999832  2346678999999999999999999999999998863    4557799999999999999999


Q ss_pred             HHHHHhhCCCCCccCCC-------------CCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHH
Q 041009           78 VKALLQVIPDKCSDTDV-------------DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE  144 (434)
Q Consensus        78 v~~Ll~~~~~~~~~~d~-------------~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  144 (434)
                      +++|++.+++. +..+.             .|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.+|+.+
T Consensus        91 v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~  168 (232)
T 2rfa_A           91 VRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKT  168 (232)
T ss_dssp             HHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHH
T ss_pred             HHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChH
Confidence            99999999887 45544             7999999999999999999999999987 677899999999999999999


Q ss_pred             HH----HHHHHhcCCCc---cccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          145 AL----KFLLENMGDSE---LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       145 ~v----~~Ll~~~~~~~---~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      ++    ++|++.|++..   +.+.+|.+|+||||+|+..|+.+++++|++++.
T Consensus       169 ~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             HHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            88    99999998732   226899999999999999999999999999987

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=3.6e-31  Score=240.88  Aligned_cols=202  Identities=21%  Similarity=0.209  Sum_probs=185.5

Q ss_pred             cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHH
Q 041009           22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLH  101 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~  101 (434)
                      +..|.+|.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.+++.....+..|.||||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            456888999999999999999999999999886 7889999999999999999999999999999886677777999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCc-HH
Q 041009          102 LAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQ-IE  180 (434)
Q Consensus       102 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~-~~  180 (434)
                      +|+..|+.+++++|++.+.+. ...+..|.||||.|+.+|+.+++++|++.|++   ++.+|..|.||||+|+..++ .+
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCSST
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHhCChHH
Confidence            999999999999999998887 66788899999999999999999999999998   88999999999999996665 88


Q ss_pred             HHHHhhhccccccccccc-CCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009          181 AIKLLTTSTAIEVNAVTA-NGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       181 iv~~Ll~~~~~~~~~~n~-~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~  233 (434)
                      ++++|++.+. +++..+. .|.||||+|+.    .+..+++++|.+.|++....
T Consensus       158 ~~~~L~~~~~-~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~~  206 (240)
T 3eu9_A          158 PTRLLLTFNV-SVNLGDKYHKNTALHWAVL----AGNTTVISLLLEAGANVDAQ  206 (240)
T ss_dssp             THHHHHHTTC-CTTCCCTTTCCCHHHHHHH----HTCHHHHHHHHHHTCCTTCB
T ss_pred             HHHHHHhcCC-CcchhhccCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCCc
Confidence            9999999988 9999997 99999999999    66789999999999886443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=1.8e-32  Score=253.44  Aligned_cols=198  Identities=24%  Similarity=0.282  Sum_probs=172.5

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHh----cCCchhhcc----CCCCCcHHHHHH---HcCCHHHHHHHHhhCCCC-----
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILR----QKPRIAEEL----DSRKSSALHIAS---QKGYVGIVKALLQVIPDK-----   88 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~----d~~g~tpLh~Aa---~~g~~~iv~~Ll~~~~~~-----   88 (434)
                      +.+|+|+||.||..|+.+.++.|++    .+.++ +..    |..|.||||+|+   ..|+.+++++|++.+++.     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            5678999999999999996555555    78776 333    478999999999   679999999999986432     


Q ss_pred             -----CccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCccccccc--------------CCCChHHHHHHHcCCHHHHHHH
Q 041009           89 -----CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARL--------------IWGETILHLCVKHNQLEALKFL  149 (434)
Q Consensus        89 -----~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~g~~~~v~~L  149 (434)
                           ....|..|.||||+|+..|+.+++++|+++++++ +..+              ..|+||||+|+.+|+.+++++|
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                 2345568999999999999999999999999988 4445              5799999999999999999999


Q ss_pred             HH---hcCCCccccCCCCCCCcHHHHHHHcCc---------HHHHHHhhhcccccc-------cccccCCCCHHHHHHHc
Q 041009          150 LE---NMGDSELLNAKDDYGMTILHLAVADKQ---------IEAIKLLTTSTAIEV-------NAVTANGFTAWDILAQS  210 (434)
Q Consensus       150 l~---~~~~~~~~~~~d~~g~t~LhlA~~~~~---------~~iv~~Ll~~~~~~~-------~~~n~~g~t~l~la~~~  210 (434)
                      ++   .|++   ++.+|.+|+||||+|+..++         .+++++|+++|+ ++       +..|.+|.||||+|+. 
T Consensus       160 l~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga-~~~~~~~~~~~~d~~g~tpL~~A~~-  234 (260)
T 3jxi_A          160 TENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA-KLFPDTNLEALLNNDGLSPLMMAAK-  234 (260)
T ss_dssp             HHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH-HHCTTCCGGGCCCTTSCCHHHHHHH-
T ss_pred             HhccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc-ccccccchhhcccCCCCCHHHHHHH-
Confidence            99   8888   89999999999999998877         799999999988 88       7899999999999999 


Q ss_pred             cCCCchhHHHHHHHHcCCCccc
Q 041009          211 KRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       211 ~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                         .+..+++++|+++|.....
T Consensus       235 ---~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          235 ---TGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHC
T ss_pred             ---cCCHHHHHHHHHhCCCccc
Confidence               7789999999999887544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=1.8e-30  Score=249.48  Aligned_cols=215  Identities=25%  Similarity=0.213  Sum_probs=185.9

Q ss_pred             CCChHHHHHHHhcCCCcc------------------------------cccccCCCCCCHHHHHHhcCCHHHHHHHHhcC
Q 041009            2 AGSVNTLLELRQQDPLIV------------------------------ERPTVNCLSETPLHVAALLGHEDFAKEILRQK   51 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~------------------------------~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~   51 (434)
                      .|+.++++.|++.+.+..                              +.+..|..|.||||+|+..|+.++++.|++++
T Consensus        69 ~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g  148 (337)
T 4g8k_A           69 MSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG  148 (337)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            588999999998775431                              23456788999999999999999999999998


Q ss_pred             Cchh---------hccCCCCCcHHHHHHHcCCHHHHHHHHhh-CCCCCccCCCCCCCHHHHHHHhCC----HHHHHHHHH
Q 041009           52 PRIA---------EELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNPLHLAAMRGH----IDVLEELAR  117 (434)
Q Consensus        52 ~~~~---------~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpL~~Aa~~g~----~~~v~~Ll~  117 (434)
                      +++.         ...+..|.||||+|+..|+.+++++|+++ +.++ +.+|..|.||+|.++..++    .+++++|++
T Consensus       149 a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~  227 (337)
T 4g8k_A          149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD  227 (337)
T ss_dssp             CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred             CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHH
Confidence            7752         23466799999999999999999999976 6665 8899999999999887654    458899999


Q ss_pred             hCCcccccccCCCChHHHHHHHcCCHHHHHHHHHh-cCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccccccc
Q 041009          118 AKPDAASARLIWGETILHLCVKHNQLEALKFLLEN-MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAV  196 (434)
Q Consensus       118 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~  196 (434)
                      ++.++ +.+|.+|+||||+|++.|+.++++.|++. +.+   ++.+|.+|+||||+|+..|+.+++++|+++|+ |+|  
T Consensus       228 ~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA-d~n--  300 (337)
T 4g8k_A          228 HGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKRGA-STD--  300 (337)
T ss_dssp             TTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC-SST--
T ss_pred             CCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCC--
Confidence            99987 67788999999999999999999999986 567   89999999999999999999999999999998 665  


Q ss_pred             ccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcc
Q 041009          197 TANGFTAWDILAQSKRDTKDWDIGELLRRAGAISA  231 (434)
Q Consensus       197 n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~  231 (434)
                         +.+|||+|+.    .+..+++++|+++|++..
T Consensus       301 ---~~~~L~~A~~----~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          301 ---CGDLVMTARR----NYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             ---TCCHHHHHHH----TTCHHHHHHHHHTTCCC-
T ss_pred             ---CCCHHHHHHH----cCCHHHHHHHHHCcCCCC
Confidence               4579999999    677899999999999864

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=1.1e-30  Score=235.68  Aligned_cols=181  Identities=18%  Similarity=0.223  Sum_probs=170.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.+.   +..|..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|
T Consensus        35 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  111 (223)
T 2f8y_A           35 YSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL  111 (223)
T ss_dssp             TTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Confidence            68999999999998653   567889999999999999999999999999866688899999999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      ++.+.+. +..|..|.||||+|+..|+.+++++|++++++. +..|..|.||||+|+++|+.+++++|+++|++   ++.
T Consensus       112 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~  186 (223)
T 2f8y_A          112 INSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDI  186 (223)
T ss_dssp             HHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTC
T ss_pred             HHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---Ccc
Confidence            9999987 788999999999999999999999999999887 67788999999999999999999999999999   889


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      +|..|+||||+|+..++.+++++|+++|.
T Consensus       187 ~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          187 TDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            99999999999999999999999999987

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=3.1e-32  Score=248.27  Aligned_cols=202  Identities=24%  Similarity=0.253  Sum_probs=176.7

Q ss_pred             CCChHHHHHHHhcCCCc-ccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLI-VERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA   80 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~   80 (434)
                      .|+.++++.|++..+.. .+.+..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++
T Consensus        18 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~   96 (236)
T 1ikn_D           18 HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGV   96 (236)
T ss_dssp             TTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             cCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            57888888888876531 124567888999999999999999999999999987 7889999999999999999999999


Q ss_pred             HHhhCCCC-----CccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccC-CCChHHHHHHHcCCHHHHHHHHHhcC
Q 041009           81 LLQVIPDK-----CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI-WGETILHLCVKHNQLEALKFLLENMG  154 (434)
Q Consensus        81 Ll~~~~~~-----~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~  154 (434)
                      |++.+++.     .+..|..|.||||+|+..|+.+++++|+++++++ ...+. .|.||||+|+..|+.+++++|+++|+
T Consensus        97 Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  175 (236)
T 1ikn_D           97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA  175 (236)
T ss_dssp             HHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99998642     4678889999999999999999999999999998 45555 89999999999999999999999999


Q ss_pred             CCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccccc--ccccCCCCHHHHHHH
Q 041009          155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVN--AVTANGFTAWDILAQ  209 (434)
Q Consensus       155 ~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~--~~n~~g~t~l~la~~  209 (434)
                      +   ++.+|..|+||||+|+..++.+++++|+++|+ +..  ..+.+|.||.+.+..
T Consensus       176 ~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          176 D---VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL-ENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             C---SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC-GGGSSCCCCCTTTCCCCC--
T ss_pred             C---CCcccCCCCCHHHHHHccCchHHHHHHHHcch-hhhhcCCccchHHHHhhhcc
Confidence            9   89999999999999999999999999999998 554  788999999876544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5.9e-31  Score=227.76  Aligned_cols=170  Identities=24%  Similarity=0.219  Sum_probs=154.8

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  107 (434)
                      +.||||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            4689999999999999999999999977999999999999999999999999999999987 789999999999999999


Q ss_pred             CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009          108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT  187 (434)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~  187 (434)
                      +.+++++|++++.+. +..|..|+||||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            999999999999887 67788999999999999999999999999999   88999999999999999999999999999


Q ss_pred             cccccccccccCCCCH
Q 041009          188 STAIEVNAVTANGFTA  203 (434)
Q Consensus       188 ~~~~~~~~~n~~g~t~  203 (434)
                      ++. +....|..|.||
T Consensus       157 ~~~-~~~~~~~~~~~p  171 (172)
T 3v30_A          157 HIL-KLFQSNLVPADP  171 (172)
T ss_dssp             HHH-HHSCC-------
T ss_pred             HHH-HHhcccCCCCCC
Confidence            988 888888888887

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=9.3e-31  Score=225.85  Aligned_cols=158  Identities=33%  Similarity=0.431  Sum_probs=147.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCH
Q 041009           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQL  143 (434)
Q Consensus        64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  143 (434)
                      ++|+.||..|+.++|+.|++.|+++ +.+|.+|+||||+|+..|+.++++.|++++.++ ..+|.+|+||||+|+.+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            4799999999999999999999998 899999999999999999999999999999987 67789999999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHH
Q 041009          144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELL  223 (434)
Q Consensus       144 ~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L  223 (434)
                      +++++|++.|++   +|.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|.+|.||||+|+.    .+..+++++|
T Consensus        84 ~~v~~Ll~~gad---vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~----~g~~~iv~~L  155 (169)
T 4gpm_A           84 EVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNTSDSDGRTPLDLARE----HGNEEVVKLL  155 (169)
T ss_dssp             HHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             HHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHH----cCCHHHHHHH
Confidence            999999999999   89999999999999999999999999999988 999999999999999999    6778999999


Q ss_pred             HHcCCCcc
Q 041009          224 RRAGAISA  231 (434)
Q Consensus       224 ~~~g~~~~  231 (434)
                      +++|++..
T Consensus       156 l~~GA~ie  163 (169)
T 4gpm_A          156 EKQGGWLE  163 (169)
T ss_dssp             HTC-----
T ss_pred             HHCCCCcC
Confidence            99999863

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=7.7e-31  Score=244.45  Aligned_cols=202  Identities=21%  Similarity=0.201  Sum_probs=160.4

Q ss_pred             CCChHHHHHHHh----cCCCccccc-ccCCCCCCHHHHHHhc---CCHHHHHHHHhcCCch------hh----ccCCCCC
Q 041009            2 AGSVNTLLELRQ----QDPLIVERP-TVNCLSETPLHVAALL---GHEDFAKEILRQKPRI------AE----ELDSRKS   63 (434)
Q Consensus         2 ~G~~~~v~~Ll~----~~~~~~~~~-~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~------~~----~~d~~g~   63 (434)
                      .|++++++.|++    .+.++.+.. ..|..|.||||+|+..   |+.+++++|++.+++.      ++    ..|..|.
T Consensus        23 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~  102 (273)
T 2pnn_A           23 QSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQ  102 (273)
T ss_dssp             TTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTC
T ss_pred             cCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCC
Confidence            588998888887    333322111 3478899999999987   9999999999997652      12    2567999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCCccCCC--------------CCCCHHHHHHHhCCHHHHHHHHH---hCCcccccc
Q 041009           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDV--------------DGRNPLHLAAMRGHIDVLEELAR---AKPDAASAR  126 (434)
Q Consensus        64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~tpL~~Aa~~g~~~~v~~Ll~---~~~~~~~~~  126 (434)
                      ||||+|+..|+.+++++|++.++++ +..+.              .|.||||+|+..|+.+++++|++   ++.+. +.+
T Consensus       103 tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~  180 (273)
T 2pnn_A          103 TALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SAR  180 (273)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eee
Confidence            9999999999999999999999987 66665              79999999999999999999999   78877 677


Q ss_pred             cCCCChHHHHHHHcCC---------HHHHHHHHHhcCCCc----cccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccc
Q 041009          127 LIWGETILHLCVKHNQ---------LEALKFLLENMGDSE----LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEV  193 (434)
Q Consensus       127 ~~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~----~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~  193 (434)
                      |.+|+||||+|+..|+         .+++++|++.|++.+    +++.+|.+|+||||+|+..|+.+++++|+++|+.|+
T Consensus       181 d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP  260 (273)
T ss_dssp             CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred             CCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence            8999999999999998         799999999998821    113589999999999999999999999999999888


Q ss_pred             cccccCCCCHHH
Q 041009          194 NAVTANGFTAWD  205 (434)
Q Consensus       194 ~~~n~~g~t~l~  205 (434)
                      ......+.+|.|
T Consensus       261 ~~~~~~~~~~~~  272 (273)
T 2pnn_A          261 ECRHAAAHHHHH  272 (273)
T ss_dssp             ------------
T ss_pred             hhhhhhhhhccC
Confidence            877777766654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3e-30  Score=227.50  Aligned_cols=163  Identities=28%  Similarity=0.313  Sum_probs=145.5

Q ss_pred             cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHH
Q 041009           22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLH  101 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~  101 (434)
                      +.+|..|.||||+|+..|+.++++.|++.++++ +..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~  106 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM  106 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            446788999999999999999999999998876 777889999999999999999999999998887 788889999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHH
Q 041009          102 LAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEA  181 (434)
Q Consensus       102 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~i  181 (434)
                      +|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..|+.++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCcHHH
Confidence            999999999999999988887 66788899999999999999999999999888   78889999999999999999999


Q ss_pred             HHHhhhccc
Q 041009          182 IKLLTTSTA  190 (434)
Q Consensus       182 v~~Ll~~~~  190 (434)
                      +++|++++.
T Consensus       183 v~~Ll~~~~  191 (192)
T 2rfm_A          183 IKIFTEVRR  191 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhccC
Confidence            999987653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=6.5e-31  Score=251.70  Aligned_cols=188  Identities=19%  Similarity=0.140  Sum_probs=157.5

Q ss_pred             hHHHHHHHhcCCCcccccc-cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCC---HHHHHH
Q 041009            5 VNTLLELRQQDPLIVERPT-VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGY---VGIVKA   80 (434)
Q Consensus         5 ~~~v~~Ll~~~~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~---~~iv~~   80 (434)
                      .++++.|++.+.+   .+. .|..|.||||+||..|+.++|++|+++|+++ +.+|..|+||||+|+..|+   .++++.
T Consensus       110 ~~~~~~l~~~g~d---vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~  185 (327)
T 1sw6_A          110 QEVNDAFPNTQLN---LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEA  185 (327)
T ss_dssp             HHHHHHCTTSCCC---SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHH
T ss_pred             HHHHHHHHhcCCC---cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHH
Confidence            3556666666644   355 6889999999999999999999999999988 7889999999999999998   788888


Q ss_pred             HHhhCCCCCccCCCCCCCHHHHHHH----hCCHHHHHHHHHh--------------------CCcccccccCCCChHHHH
Q 041009           81 LLQVIPDKCSDTDVDGRNPLHLAAM----RGHIDVLEELARA--------------------KPDAASARLIWGETILHL  136 (434)
Q Consensus        81 Ll~~~~~~~~~~d~~g~tpL~~Aa~----~g~~~~v~~Ll~~--------------------~~~~~~~~~~~g~t~Lh~  136 (434)
                      |++.+....+.+|..|+||||+|+.    .|+.++++.|++.                    +.++ ...+..|.||||.
T Consensus       186 ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~  264 (327)
T 1sw6_A          186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILE  264 (327)
T ss_dssp             HHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHH
T ss_pred             HHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHH
Confidence            8888744458899999999999999    8999999999987                    4555 5678889999999


Q ss_pred             HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      |+.      +++|++.  +   ++.+|.+|+||||+|+..|+.+++++|+++|+ |++.+|.+|+||||+|+.
T Consensus       265 a~~------~~~Ll~~--~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga-d~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          265 NLD------LKWIIAN--M---LNAQDSNGDTCLNIAARLGNISIVDALLDYGA-DPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HCS------HHHHHHH--T---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC-CTTCCCTTSCCGGGGTCC
T ss_pred             HHH------HHHHHHh--C---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHh
Confidence            986      8899987  4   78999999999999999999999999999988 999999999999999875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4e-30  Score=237.23  Aligned_cols=181  Identities=27%  Similarity=0.240  Sum_probs=159.9

Q ss_pred             CCChH----HHHHHHhcCCCcccccc----cCCCCCCHHHHHHhc---CCHHHHHHHHhcCCchhh----------ccCC
Q 041009            2 AGSVN----TLLELRQQDPLIVERPT----VNCLSETPLHVAALL---GHEDFAKEILRQKPRIAE----------ELDS   60 (434)
Q Consensus         2 ~G~~~----~v~~Ll~~~~~~~~~~~----~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~----------~~d~   60 (434)
                      .|+.+    +++.|++.+.++   +.    .|..|.||||+|+..   |+.++++.|++.+++...          ..|.
T Consensus        12 ~g~~~~v~~ll~~l~~~g~~i---~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~   88 (256)
T 2etb_A           12 RGVPEELTGLLEYLRWNSKYL---TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFY   88 (256)
T ss_dssp             HTCGGGGTTHHHHHHHHTCCT---TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTT
T ss_pred             cCCHHHHHHHHHHHHHcCCCc---ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccc
Confidence            47887    556666677553   44    688999999999999   999999999999876521          2357


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCC-------------CCCHHHHHHHhCCHHHHHHHHH---hCCcccc
Q 041009           61 RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD-------------GRNPLHLAAMRGHIDVLEELAR---AKPDAAS  124 (434)
Q Consensus        61 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~tpL~~Aa~~g~~~~v~~Ll~---~~~~~~~  124 (434)
                      .|.||||+|+..|+.+++++|++.++++ +..|..             |.||||+|+..|+.+++++|++   ++.+. +
T Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n  166 (256)
T 2etb_A           89 QGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-E  166 (256)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-T
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-C
Confidence            8999999999999999999999999987 667765             9999999999999999999999   88887 6


Q ss_pred             cccCCCChHHHHHHH--cCCHH-------HHHHHHHhcCCCccc-------cCCCCCCCcHHHHHHHcCcHHHHHHhhhc
Q 041009          125 ARLIWGETILHLCVK--HNQLE-------ALKFLLENMGDSELL-------NAKDDYGMTILHLAVADKQIEAIKLLTTS  188 (434)
Q Consensus       125 ~~~~~g~t~Lh~A~~--~g~~~-------~v~~Ll~~~~~~~~~-------~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~  188 (434)
                      .+|.+|+||||+|+.  +++.+       ++++|++.|++   +       +.+|.+|+||||+|+..|+.+++++|+++
T Consensus       167 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR---LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC---cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            778999999999999  88888       99999999988   6       89999999999999999999999999999


Q ss_pred             cc
Q 041009          189 TA  190 (434)
Q Consensus       189 ~~  190 (434)
                      |.
T Consensus       244 g~  245 (256)
T 2etb_A          244 EF  245 (256)
T ss_dssp             HH
T ss_pred             CC
Confidence            76

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=241.73  Aligned_cols=192  Identities=22%  Similarity=0.253  Sum_probs=174.9

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCCc-hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH-
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQKPR-IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA-  104 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa-  104 (434)
                      .+.+++|.|+..|+.+.++.+++.+.+ .++..|..|+||||+|+..|+.+++++|++.++...+..|..|.||||+|+ 
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            357889999999999999999987665 358889999999999999999999999999998555889999999999999 


Q ss_pred             ----HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHH
Q 041009          105 ----MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIE  180 (434)
Q Consensus       105 ----~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~  180 (434)
                          ..|+.++++.|++.+... ...+..|+||||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.+
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~~~  230 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGHKE  230 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCCHH
Confidence                678999999999998766 66678899999999999999999999999999   8999999999999999999999


Q ss_pred             HHHHhhh-cccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcC
Q 041009          181 AIKLLTT-STAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG  227 (434)
Q Consensus       181 iv~~Ll~-~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g  227 (434)
                      ++++|++ .|+ +++.+|.+|.||+|+|+.    .+..+++++|++.+
T Consensus       231 iv~~Ll~~~ga-d~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          231 IAGLLLAVPSC-DISLTDRDGSTALMVALD----AGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHTSTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHC
T ss_pred             HHHHHHhcCCC-CCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhcc
Confidence            9999999 555 999999999999999999    66789999998764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2e-29  Score=216.97  Aligned_cols=158  Identities=23%  Similarity=0.241  Sum_probs=148.3

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  106 (434)
                      .|.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence            4789999999999999999999999876 888999999999999999999999999998887 78899999999999999


Q ss_pred             CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009          107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT  186 (434)
Q Consensus       107 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll  186 (434)
                      |+.+++++|++++++. +..|..|.||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.+++++|+
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            9999999999999887 67788899999999999999999999999998   7889999999999999999999999999


Q ss_pred             hccc
Q 041009          187 TSTA  190 (434)
Q Consensus       187 ~~~~  190 (434)
                      +++.
T Consensus       156 ~~~~  159 (167)
T 3v31_A          156 SHLL  159 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8865

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=5.5e-30  Score=239.29  Aligned_cols=183  Identities=19%  Similarity=0.195  Sum_probs=164.3

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHH-----HcCCHHH
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIAS-----QKGYVGI   77 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa-----~~g~~~i   77 (434)
                      |+++.++.+++...+. ..+..|.+|.||||+||..|+.++++.|++.++...+..|..|.||||+|+     ..++.++
T Consensus        87 ~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~  165 (276)
T 4hbd_A           87 RHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIET  165 (276)
T ss_dssp             HHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHH
Confidence            5567777777654331 246678899999999999999999999999999556899999999999999     6688999


Q ss_pred             HHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHH-hcCCC
Q 041009           78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE-NMGDS  156 (434)
Q Consensus        78 v~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~  156 (434)
                      +++|++.+... +..|..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.+|+.+++++|++ .|++ 
T Consensus       166 v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-  242 (276)
T 4hbd_A          166 VLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD-  242 (276)
T ss_dssp             HHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-
T ss_pred             HHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-
Confidence            99999999776 778899999999999999999999999999987 6778999999999999999999999999 8888 


Q ss_pred             ccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccc
Q 041009          157 ELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAI  191 (434)
Q Consensus       157 ~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~  191 (434)
                        ++.+|.+|+||||+|+..|+.+++++|+++..+
T Consensus       243 --~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          243 --ISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             --TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             --CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence              899999999999999999999999999987653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2.6e-29  Score=216.93  Aligned_cols=160  Identities=28%  Similarity=0.409  Sum_probs=146.2

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 041009           24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (434)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A  103 (434)
                      ....+.++||.||..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLA   87 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence            4556789999999999999999999999887 788999999999999999999999999999887 78899999999999


Q ss_pred             HHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHH
Q 041009          104 AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK  183 (434)
Q Consensus       104 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~  183 (434)
                      +..|+.+++++|++++++. +..|.+|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+.++++
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~  163 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDLAE  163 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHHHHH
Confidence            9999999999999999887 66788899999999999999999999999998   8899999999999999999999999


Q ss_pred             Hhhhcc
Q 041009          184 LLTTST  189 (434)
Q Consensus       184 ~Ll~~~  189 (434)
                      +|++.|
T Consensus       164 ~L~~~G  169 (169)
T 2y1l_E          164 ILQKLN  169 (169)
T ss_dssp             HHHTC-
T ss_pred             HHHHcC
Confidence            998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.5e-29  Score=216.49  Aligned_cols=158  Identities=23%  Similarity=0.266  Sum_probs=144.0

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  106 (434)
                      ...||||.|+..|+.++++.|++++.++ +..|..|+||||+|+. |+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            3679999999999999999999999887 7889999999999999 9999999999998887 78899999999999999


Q ss_pred             CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009          107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT  186 (434)
Q Consensus       107 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll  186 (434)
                      |+.+++++|+++++++ +.+|.+|+||||+|+++|+.+++++|+++|++.  ++.+|..|+||||+|+..|+.+++++|+
T Consensus        81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            9999999999998887 667888999999999999999999999998873  5888999999999999999999999999


Q ss_pred             hccc
Q 041009          187 TSTA  190 (434)
Q Consensus       187 ~~~~  190 (434)
                      ++|+
T Consensus       158 ~~GA  161 (162)
T 1ihb_A          158 ANGA  161 (162)
T ss_dssp             HTC-
T ss_pred             HhCC
Confidence            9876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=6.6e-30  Score=236.25  Aligned_cols=187  Identities=21%  Similarity=0.206  Sum_probs=158.3

Q ss_pred             CCChHHHHHHHh----cCCCccccc-ccCCCCCCHHHHHH---hcCCHHHHHHHHhcCCch----------hhccCCCCC
Q 041009            2 AGSVNTLLELRQ----QDPLIVERP-TVNCLSETPLHVAA---LLGHEDFAKEILRQKPRI----------AEELDSRKS   63 (434)
Q Consensus         2 ~G~~~~v~~Ll~----~~~~~~~~~-~~~~~g~t~Lh~Aa---~~g~~~~v~~Ll~~~~~~----------~~~~d~~g~   63 (434)
                      .|+.+.++.|++    .+.++.... ..|..|.||||+|+   ..|+.++++.|++.+++.          .+..|..|+
T Consensus        15 ~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~   94 (260)
T 3jxi_A           15 RGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQ   94 (260)
T ss_dssp             HTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESB
T ss_pred             hCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCC
Confidence            488886555555    666543222 23477999999999   679999999999987542          234456899


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCCccCC--------------CCCCCHHHHHHHhCCHHHHHHHHH---hCCcccccc
Q 041009           64 SALHIASQKGYVGIVKALLQVIPDKCSDTD--------------VDGRNPLHLAAMRGHIDVLEELAR---AKPDAASAR  126 (434)
Q Consensus        64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpL~~Aa~~g~~~~v~~Ll~---~~~~~~~~~  126 (434)
                      ||||+|+..|+.+++++|++.++++ +..|              ..|.||||+|+..|+.+++++|++   ++.++ +.+
T Consensus        95 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~  172 (260)
T 3jxi_A           95 TALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQ  172 (260)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCC
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-ccc
Confidence            9999999999999999999999987 6676              689999999999999999999999   78887 677


Q ss_pred             cCCCChHHHHHHHcCC---------HHHHHHHHHhcCCCc----cccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          127 LIWGETILHLCVKHNQ---------LEALKFLLENMGDSE----LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       127 ~~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~----~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      |.+|+||||+|+..++         .+++++|++.|++..    +.+.+|.+|+||||+|+..|+.+++++|+++|.
T Consensus       173 d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            8999999999999888         799999999998721    127799999999999999999999999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=3e-29  Score=221.04  Aligned_cols=164  Identities=21%  Similarity=0.229  Sum_probs=154.2

Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChH
Q 041009           54 IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETI  133 (434)
Q Consensus        54 ~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  133 (434)
                      ..+.+|..|+||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++++. ...|..|.||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~  104 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTP  104 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcH
Confidence            34678999999999999999999999999999887 788999999999999999999999999999887 6778899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCC
Q 041009          134 LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRD  213 (434)
Q Consensus       134 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~  213 (434)
                      ||+|+.+|+.+++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+.    
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----  176 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASARI----  176 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHH----
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHH----
Confidence            9999999999999999999999   89999999999999999999999999999988 999999999999999999    


Q ss_pred             CchhHHHHHHHHcC
Q 041009          214 TKDWDIGELLRRAG  227 (434)
Q Consensus       214 ~~~~~i~~~L~~~g  227 (434)
                      .+..+++++|.+.|
T Consensus       177 ~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          177 FGRQEVIKIFTEVR  190 (192)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHhcc
Confidence            67789999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3e-29  Score=218.60  Aligned_cols=169  Identities=20%  Similarity=0.157  Sum_probs=148.8

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009           26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM  105 (434)
Q Consensus        26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~  105 (434)
                      ..+.++||.||..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            347899999999999999999999977767888999999999999999999999999998887 7888999999999999


Q ss_pred             hCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009          106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL  185 (434)
Q Consensus       106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L  185 (434)
                      .|+.+++++|++++++. +..|..|.||||+|+..|+.+++++|+++|++   ++.+|.+|.||||+|+..++.+++++|
T Consensus        82 ~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~L  157 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRELLRERA  157 (179)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999998887 66788899999999999999999999999988   888999999999999999999999999


Q ss_pred             hhcccccccccccCC
Q 041009          186 TTSTAIEVNAVTANG  200 (434)
Q Consensus       186 l~~~~~~~~~~n~~g  200 (434)
                      ++.|+ +++..+..+
T Consensus       158 ~~~g~-~~~~~~~~~  171 (179)
T 3f6q_A          158 EKMGQ-NLNRIPYKD  171 (179)
T ss_dssp             HHTTC-CCSCBCCCC
T ss_pred             HHhhc-CcccCCccc
Confidence            99888 777666544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.9e-29  Score=216.65  Aligned_cols=160  Identities=28%  Similarity=0.328  Sum_probs=124.1

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA  104 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  104 (434)
                      |..|+||||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence            4557788888888888888888888766655677777888888888888888888888887776 677778888888888


Q ss_pred             HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009          105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL  184 (434)
Q Consensus       105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~  184 (434)
                      ..|+.+++++|++++.+. +..|.+|+||||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|+. ++.+++++
T Consensus        84 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~-~~~~i~~~  158 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD-GDTDIQDL  158 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc-CChHHHHH
Confidence            888888888888877776 55677788888888888888888888888777   67778888888888665 77788888


Q ss_pred             hhhccc
Q 041009          185 LTTSTA  190 (434)
Q Consensus       185 Ll~~~~  190 (434)
                      |+++|+
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            877664

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=9.7e-32  Score=244.08  Aligned_cols=193  Identities=17%  Similarity=0.111  Sum_probs=164.4

Q ss_pred             HHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCC
Q 041009            8 LLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD   87 (434)
Q Consensus         8 v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~   87 (434)
                      ++.|++++......+..+.+|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+..|+.+++++|++.+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            46778877665545556777889999999999999999999999987 78899999999999999999999999999998


Q ss_pred             CCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHH--HHcCCHHHHHHHHHhcCCCccccCCCCC
Q 041009           88 KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC--VKHNQLEALKFLLENMGDSELLNAKDDY  165 (434)
Q Consensus        88 ~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~d~~  165 (434)
                      + +.+|..|.||||+|+..|+.+++++|++++++.....+.+|+||||+|  +..|+.+++++|++.|++   ++.+|..
T Consensus        80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~~  155 (229)
T 2vge_A           80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSG  155 (229)
T ss_dssp             T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGGG
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccCC
Confidence            7 889999999999999999999999999999998555457899999999  999999999999999998   8889999


Q ss_pred             CCcHHHHHHHcCcHHHHHHhhhccccc--ccccccCCCCHHHHHHH
Q 041009          166 GMTILHLAVADKQIEAIKLLTTSTAIE--VNAVTANGFTAWDILAQ  209 (434)
Q Consensus       166 g~t~LhlA~~~~~~~iv~~Ll~~~~~~--~~~~n~~g~t~l~la~~  209 (434)
                      |.|++|.++....   .++|++.|+ +  ++.+|.+|.||||+|+.
T Consensus       156 ~~~~l~~~~~~~~---~~~ll~~ga-~~~~~~~d~~G~TpL~~A~~  197 (229)
T 2vge_A          156 AVYALWDYSAEFG---DELSFREGE-SVTVLRRDGPEETDWWWAAL  197 (229)
T ss_dssp             EEEESSCBCCSST---TBCCBCTTC-EEEEEESSCTTCSSEEEEEE
T ss_pred             chHHHHHHhhccc---cccCccccc-cccccccCCCcccHHHHHHH
Confidence            9999996655442   367777776 5  78899999999999988

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.6e-28  Score=208.28  Aligned_cols=151  Identities=24%  Similarity=0.365  Sum_probs=136.9

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  107 (434)
                      ..||||.|+..|+.++++.|++.+++. + .|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            458999999999999999999998876 3 5888999999999999999999999998887 788899999999999999


Q ss_pred             CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009          108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL  185 (434)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L  185 (434)
                      +.+++++|+++++++ +..|.+|+||||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.+++++|
T Consensus        79 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           79 HANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999998887 66788899999999999999999999999988   888999999999999999999999886

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=1.7e-29  Score=241.88  Aligned_cols=212  Identities=17%  Similarity=0.092  Sum_probs=165.8

Q ss_pred             CChHHHHHHHhcCCCccccc--------------ccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhc-cCCCCCcHHH
Q 041009            3 GSVNTLLELRQQDPLIVERP--------------TVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEE-LDSRKSSALH   67 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~--------------~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh   67 (434)
                      |+.++++.|++++.+.-...              .......+.+|.|+..+..++++.|++.+.++ +. .|..|+||||
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh  136 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLH  136 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHH
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHH
Confidence            78999999998773311000              01111223458888888889999999999988 66 8999999999


Q ss_pred             HHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCC---HHHHHHHHHhCCcccccccCCCChHHHHHHH----c
Q 041009           68 IASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH---IDVLEELARAKPDAASARLIWGETILHLCVK----H  140 (434)
Q Consensus        68 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~---~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~----~  140 (434)
                      +|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+   .++++.|++.+.......|..|+||||+|+.    .
T Consensus       137 ~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~  215 (327)
T 1sw6_A          137 WLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT  215 (327)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTST
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccc
Confidence            999999999999999999988 7999999999999999998   7888888888755557889999999999999    8


Q ss_pred             CCHHHHHHHHHh--------------------cCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCC
Q 041009          141 NQLEALKFLLEN--------------------MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG  200 (434)
Q Consensus       141 g~~~~v~~Ll~~--------------------~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g  200 (434)
                      |+.+++++|++.                    |++   ++.+|..|.||||.|+.      +++|+++   +++.+|.+|
T Consensus       216 g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G  283 (327)
T 1sw6_A          216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK---PNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNG  283 (327)
T ss_dssp             TCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------------CHHHHHCS------HHHHHHH---TTTCCCTTS
T ss_pred             ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC---cccccccCCChhHHHHH------HHHHHHh---CCCCCCCCC
Confidence            999999999987                    566   88999999999999985      8889887   789999999


Q ss_pred             CCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          201 FTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       201 ~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      .||||+|+.    .+..+++++|+++|++...
T Consensus       284 ~TpLh~A~~----~g~~~~v~~Ll~~Gad~~~  311 (327)
T 1sw6_A          284 DTCLNIAAR----LGNISIVDALLDYGADPFI  311 (327)
T ss_dssp             CCHHHHHHH----HCCHHHHHHHHHTTCCTTC
T ss_pred             CCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            999999999    6678999999999998644

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.7e-28  Score=211.18  Aligned_cols=160  Identities=23%  Similarity=0.236  Sum_probs=150.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHc
Q 041009           61 RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKH  140 (434)
Q Consensus        61 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  140 (434)
                      .|.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++++++ ...+..|.||||+|+.+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence            5889999999999999999999999876 889999999999999999999999999998887 66788899999999999


Q ss_pred             CCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHH
Q 041009          141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIG  220 (434)
Q Consensus       141 g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~  220 (434)
                      |+.+++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|.+|.||+|+|+.    .+..+++
T Consensus        80 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~----~~~~~~~  151 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA-DPTIETDSGYNSMDLAVA----LGYRSVQ  151 (167)
T ss_dssp             TCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHH
T ss_pred             CCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----cCcHHHH
Confidence            999999999999999   89999999999999999999999999999988 999999999999999999    6678999


Q ss_pred             HHHHHcCCCc
Q 041009          221 ELLRRAGAIS  230 (434)
Q Consensus       221 ~~L~~~g~~~  230 (434)
                      ++|.+++.+.
T Consensus       152 ~~L~~~~~~~  161 (167)
T 3v31_A          152 QVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999876654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.3e-28  Score=207.78  Aligned_cols=154  Identities=25%  Similarity=0.323  Sum_probs=140.1

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  107 (434)
                      |.||||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|++.+.++ +.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            56899999999999999999998444558889999999999 9999999999999999887 788999999999999999


Q ss_pred             CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009          108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT  187 (434)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~  187 (434)
                      +.+++++|+++++++ +..|.+|+||||+|+.+|+.+++++|++. ++   ++.+|.+|+||||+|+..|+.+++++|++
T Consensus        80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999999887 66788899999999999999999999998 77   88899999999999999999999999986


Q ss_pred             c
Q 041009          188 S  188 (434)
Q Consensus       188 ~  188 (434)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=6.4e-28  Score=208.14  Aligned_cols=161  Identities=34%  Similarity=0.413  Sum_probs=148.1

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHH
Q 041009           57 ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHL  136 (434)
Q Consensus        57 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  136 (434)
                      .....+.+|||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++.+. +..|..|.||||+
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   86 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL   86 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence            34566789999999999999999999999887 788999999999999999999999999999887 6678889999999


Q ss_pred             HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCch
Q 041009          137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKD  216 (434)
Q Consensus       137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~  216 (434)
                      |+.+|+.+++++|++.|++   ++.+|.+|+||||+|+..++.+++++|+++|+ +++.+|..|.||+|+|+.    .+.
T Consensus        87 A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~----~~~  158 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDISID----NGN  158 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTC
T ss_pred             HHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----hCC
Confidence            9999999999999999999   89999999999999999999999999999988 999999999999999999    677


Q ss_pred             hHHHHHHHHcC
Q 041009          217 WDIGELLRRAG  227 (434)
Q Consensus       217 ~~i~~~L~~~g  227 (434)
                      .+++++|.+.|
T Consensus       159 ~~~~~~L~~~G  169 (169)
T 2y1l_E          159 EDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHHcC
Confidence            89999998765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3e-28  Score=208.35  Aligned_cols=160  Identities=23%  Similarity=0.285  Sum_probs=147.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 041009           60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVK  139 (434)
Q Consensus        60 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  139 (434)
                      +...||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+. |+.+++++|+++++++ +..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            34679999999999999999999999887 7889999999999999 9999999999999887 6678899999999999


Q ss_pred             cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHH
Q 041009          140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDI  219 (434)
Q Consensus       140 ~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i  219 (434)
                      +|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.+++++|+++++.+++..|..|.||+|+|+.    .+..++
T Consensus        80 ~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~----~~~~~~  152 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL----YGRNEV  152 (162)
T ss_dssp             HTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH----TTCHHH
T ss_pred             cCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH----cCCHHH
Confidence            9999999999999998   899999999999999999999999999999984479999999999999999    677899


Q ss_pred             HHHHHHcCCC
Q 041009          220 GELLRRAGAI  229 (434)
Q Consensus       220 ~~~L~~~g~~  229 (434)
                      +++|.++|++
T Consensus       153 ~~~Ll~~GAd  162 (162)
T 1ihb_A          153 VSLMQANGAG  162 (162)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHhCCC
Confidence            9999999974

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.8e-28  Score=210.86  Aligned_cols=161  Identities=20%  Similarity=0.207  Sum_probs=150.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN  141 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  141 (434)
                      +.||||.|+..|+.++++.|++.+++..+..|..|.||||+|+..|+.+++++|+++++++ +..+..|+||||+|+.+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            5689999999999999999999998866889999999999999999999999999999887 667888999999999999


Q ss_pred             CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHH
Q 041009          142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGE  221 (434)
Q Consensus       142 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~  221 (434)
                      +.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|.+|.||+|+|+.    .+..++++
T Consensus        81 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~~~~  152 (172)
T 3v30_A           81 YTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLARGA-DLTTEADSGYTPMDLAVA----LGYRKVQQ  152 (172)
T ss_dssp             CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHH
T ss_pred             CHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHH----hCcHHHHH
Confidence            99999999999999   89999999999999999999999999999987 999999999999999999    66789999


Q ss_pred             HHHHcCCCcc
Q 041009          222 LLRRAGAISA  231 (434)
Q Consensus       222 ~L~~~g~~~~  231 (434)
                      +|.++|++..
T Consensus       153 ~L~~~~~~~~  162 (172)
T 3v30_A          153 VIENHILKLF  162 (172)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHh
Confidence            9999887643

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=3.1e-28  Score=209.07  Aligned_cols=161  Identities=30%  Similarity=0.328  Sum_probs=146.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHH
Q 041009           58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC  137 (434)
Q Consensus        58 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  137 (434)
                      .|.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++++++ +..|.+|+||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence            47788999999999999999999999877666788889999999999999999999999999887 67788999999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchh
Q 041009          138 VKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDW  217 (434)
Q Consensus       138 ~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~  217 (434)
                      +.+|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|.+|.||+|+|..     +..
T Consensus        83 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~a~~-----~~~  153 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA-DPTKKNRDGNTPLDLVKD-----GDT  153 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCTGGGSCT-----TCH
T ss_pred             HHcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCChhHhHhc-----CCh
Confidence            999999999999999999   89999999999999999999999999999987 999999999999999654     446


Q ss_pred             HHHHHHHHcCC
Q 041009          218 DIGELLRRAGA  228 (434)
Q Consensus       218 ~i~~~L~~~g~  228 (434)
                      +++++|.+.|+
T Consensus       154 ~i~~~L~~~gA  164 (165)
T 3twr_A          154 DIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHhhccc
Confidence            89999998876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1e-27  Score=208.82  Aligned_cols=164  Identities=21%  Similarity=0.182  Sum_probs=150.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 041009           60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVK  139 (434)
Q Consensus        60 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  139 (434)
                      .++.+|||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            457899999999999999999999977666889999999999999999999999999999887 6678899999999999


Q ss_pred             cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHH
Q 041009          140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDI  219 (434)
Q Consensus       140 ~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i  219 (434)
                      +|+.+++++|++.|++   ++.+|.+|+||||+|+..++.+++++|+++|+ +++..|..|.||+|+|..    ....++
T Consensus        82 ~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~----~~~~~~  153 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVANGA-LVSICNKYGEMPVDKAKA----PLRELL  153 (179)
T ss_dssp             TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSSBCCTTSCCGGGGSCH----HHHHHH
T ss_pred             cCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CcchhccCCCCcHHHHHH----HHHHHH
Confidence            9999999999999999   89999999999999999999999999999988 999999999999999988    677899


Q ss_pred             HHHHHHcCCCccc
Q 041009          220 GELLRRAGAISAQ  232 (434)
Q Consensus       220 ~~~L~~~g~~~~~  232 (434)
                      +++|.+.|++...
T Consensus       154 ~~~L~~~g~~~~~  166 (179)
T 3f6q_A          154 RERAEKMGQNLNR  166 (179)
T ss_dssp             HHHHHHTTCCCSC
T ss_pred             HHHHHHhhcCccc
Confidence            9999999998643

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=3.4e-27  Score=200.05  Aligned_cols=151  Identities=32%  Similarity=0.363  Sum_probs=141.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN  141 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  141 (434)
                      +.||||.|+..|+.+++++|++.+.+. + .|..|.||||+|+..|+.+++++|++++++. +..+..|+||||+|+.+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            468999999999999999999999876 3 6889999999999999999999999999887 677888999999999999


Q ss_pred             CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHH
Q 041009          142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGE  221 (434)
Q Consensus       142 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~  221 (434)
                      +.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+.    .+..++++
T Consensus        79 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~i~~  150 (153)
T 1awc_B           79 HANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDISID----NGNEDLAE  150 (153)
T ss_dssp             CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHH
T ss_pred             hHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHH----cCCHHHHH
Confidence            99999999999999   89999999999999999999999999999988 999999999999999999    67788888


Q ss_pred             HH
Q 041009          222 LL  223 (434)
Q Consensus       222 ~L  223 (434)
                      +|
T Consensus       151 ~L  152 (153)
T 1awc_B          151 IL  152 (153)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.9e-28  Score=223.91  Aligned_cols=176  Identities=17%  Similarity=0.164  Sum_probs=129.4

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009           26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM  105 (434)
Q Consensus        26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~  105 (434)
                      ..|.||||.|+..|+.+.++.|+++|.++ + .+..|.||||.|+..|+.+++++|++.++++ +.+|..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            45999999999999999999999999987 3 3578899999999999999999999999976 8899999999999999


Q ss_pred             hCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCC-cHHHHH--HHcCcHHHH
Q 041009          106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGM-TILHLA--VADKQIEAI  182 (434)
Q Consensus       106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~-t~LhlA--~~~~~~~iv  182 (434)
                      .|+.+++++|++++++. +.+|.+|+||||+|+.+|+.+++++|+++|++   ++.+|..|. ||||+|  +..|+.+++
T Consensus        80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccHHHH
Confidence            99999999999999987 77788999999999999999999999999999   888888877 999999  788999999


Q ss_pred             HHhhhccccccccc---------ccCCCCHHHHHHH
Q 041009          183 KLLTTSTAIEVNAV---------TANGFTAWDILAQ  209 (434)
Q Consensus       183 ~~Ll~~~~~~~~~~---------n~~g~t~l~la~~  209 (434)
                      ++|+++++ +++..         +..+.++.+++..
T Consensus       156 ~~Ll~~~a-~~~~~~~~~~~al~d~~~~~~~eLa~~  190 (239)
T 1ycs_B          156 QFLYGVQE-KMGIMNKGVIYALWDYEPQNDDELPMK  190 (239)
T ss_dssp             HHHHHHHH-HTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred             HHHHHhhh-cccccccceEEEEeccCCCCCCccccc
Confidence            99999987 77666         4557777776554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=8.4e-27  Score=198.09  Aligned_cols=153  Identities=23%  Similarity=0.312  Sum_probs=142.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN  141 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  141 (434)
                      |.||||.|+..|+.++++.|++......+..|..|.||||+ +..|+.+++++|+++++++ +..|..|+||||+|+.+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            57999999999999999999999433447899999999999 9999999999999999887 677889999999999999


Q ss_pred             CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHH
Q 041009          142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGE  221 (434)
Q Consensus       142 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~  221 (434)
                      +.+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|+++ + +++..|.+|.||+|+|+.    .+..++++
T Consensus        80 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~-~~~~~~~~g~t~l~~A~~----~~~~~~v~  150 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S-DLHRRDARGLTPLELALQ----RGAQDLVD  150 (156)
T ss_dssp             CHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S-CTTCCCTTSCCHHHHHHH----SCCHHHHH
T ss_pred             cHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c-CCCCcCCCCCCHHHHHHH----cCcHHHHH
Confidence            99999999999998   899999999999999999999999999998 5 999999999999999999    67789999


Q ss_pred             HHHH
Q 041009          222 LLRR  225 (434)
Q Consensus       222 ~L~~  225 (434)
                      +|.+
T Consensus       151 ~Ll~  154 (156)
T 1bd8_A          151 ILQG  154 (156)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=6.5e-26  Score=192.89  Aligned_cols=141  Identities=19%  Similarity=0.199  Sum_probs=72.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCCh-HHHH
Q 041009           58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGET-ILHL  136 (434)
Q Consensus        58 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~Lh~  136 (434)
                      .+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+ .|+.+++++|++++.+. +.+|..|+| |||+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD   84 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence            3445555555555555555555555555444 445555555555553 55555555555555444 344555555 6666


Q ss_pred             HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHH
Q 041009          137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD  205 (434)
Q Consensus       137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~  205 (434)
                      |+.+|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..|.||.+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAAAG-GTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC-CCCccCcCcCcccc
Confidence            6666666666666666666   56666666666666666666666666666665 66666666666655

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=3.2e-26  Score=200.61  Aligned_cols=162  Identities=15%  Similarity=0.097  Sum_probs=140.2

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCH----HHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYV----GIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpL~~A  103 (434)
                      +.++|+.|+..|+.+.++.+++.+.+.  ..|..|+||||+|+..|+.    +++++|+++|+++ +.+|.+|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            468999999999999999999987653  2237799999999999975    5999999999998 88999999999999


Q ss_pred             HHhCC------HHHHHHHHHhCCcccccccCCCC-hHHHHHHHcCC-----HHHHHHHHH-hcCCCccccCCCCCCCcHH
Q 041009          104 AMRGH------IDVLEELARAKPDAASARLIWGE-TILHLCVKHNQ-----LEALKFLLE-NMGDSELLNAKDDYGMTIL  170 (434)
Q Consensus       104 a~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~g~-----~~~v~~Ll~-~~~~~~~~~~~d~~g~t~L  170 (434)
                      +..|+      .+++++|+++|+++ +.+|..|+ ||||+|+..+.     .+++++|++ .|++   ++.+|.+|+|||
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~~G~TpL  158 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTAL  158 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCTTSCCHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCCCCCCHH
Confidence            99987      67899999999988 67788899 99999998543     568999999 8999   899999999999


Q ss_pred             HHHHHcCcHHHHHHhhhcccccccccc
Q 041009          171 HLAVADKQIEAIKLLTTSTAIEVNAVT  197 (434)
Q Consensus       171 hlA~~~~~~~iv~~Ll~~~~~~~~~~n  197 (434)
                      |+|+..++.+++++|.+... +.+.++
T Consensus       159 ~~A~~~~~~~~v~~L~~~~~-~~~~~~  184 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDYIK-KYNLKE  184 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHHHH-HHTCCC
T ss_pred             HHHHHcCCHHHHHHHHHHHH-HHhccc
Confidence            99999999999999987755 555544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=2.4e-25  Score=184.83  Aligned_cols=130  Identities=21%  Similarity=0.276  Sum_probs=92.2

Q ss_pred             cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCC-CCCHH
Q 041009           22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD-GRNPL  100 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-g~tpL  100 (434)
                      +..|..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+. |+.+++++|++.++++ +.+|.. |.|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence            445666777777777777777777777777665 6667777777777777 7777777777777766 566666 67777


Q ss_pred             HHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009          101 HLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD  155 (434)
Q Consensus       101 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  155 (434)
                      |+|+..|+.+++++|+++++++ +.+|..|+||||+|+++|+.+++++|+++|++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7777777777777777776665 45566677777777777777777777766653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=9.7e-26  Score=191.79  Aligned_cols=144  Identities=19%  Similarity=0.205  Sum_probs=118.1

Q ss_pred             ccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCC-HHH
Q 041009           23 TVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRN-PLH  101 (434)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-pL~  101 (434)
                      ..+..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+ .|+.+++++|++.+.++ +.+|..|.| |||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~   83 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH   83 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence            45677999999999999999999999999887 788999999999985 99999999999999887 889999999 999


Q ss_pred             HHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHH
Q 041009          102 LAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA  173 (434)
Q Consensus       102 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA  173 (434)
                      +|+..|+.+++++|+++++++ +.+|..|+||||+|+.+|+.+++++|+++|++   ++.+|..|.||.+-+
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccC
Confidence            999999999999999999987 67788999999999999999999999999999   889999999998744

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=6.7e-26  Score=206.90  Aligned_cols=164  Identities=21%  Similarity=0.130  Sum_probs=118.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 041009           59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV  138 (434)
Q Consensus        59 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  138 (434)
                      +..|.||||.|+..|+.++++.|+++|.+. + .+..|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            456999999999999999999999999887 3 3478899999999999999999999999976 677889999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCC-CHHHHHHHccCCCchh
Q 041009          139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF-TAWDILAQSKRDTKDW  217 (434)
Q Consensus       139 ~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~-t~l~la~~~~~~~~~~  217 (434)
                      .+|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.+++++|+++|+ +++..|..|. ||+|+|..  ...++.
T Consensus        79 ~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~~~~t~l~~a~~--~~~g~~  152 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVESGA-AVFAMTYSDMQTAADKCEE--MEEGYT  152 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCSSSCCCHHHHCCS--SSTTCC
T ss_pred             HcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CcceecCCCCcchHHHHHH--hhhccH
Confidence            99999999999999999   89999999999999999999999999999988 9999998887 99998832  125668


Q ss_pred             HHHHHHHHcCCCcc
Q 041009          218 DIGELLRRAGAISA  231 (434)
Q Consensus       218 ~i~~~L~~~g~~~~  231 (434)
                      +++++|.++|++..
T Consensus       153 ~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B          153 QCSQFLYGVQEKMG  166 (239)
T ss_dssp             CHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhccc
Confidence            89999999888754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=3e-25  Score=184.21  Aligned_cols=130  Identities=22%  Similarity=0.251  Sum_probs=119.9

Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCC-CChH
Q 041009           55 AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIW-GETI  133 (434)
Q Consensus        55 ~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~  133 (434)
                      ++..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+. |+.+++++|+++++++ +..|.. |+||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCH
Confidence            3778999999999999999999999999998887 7889999999999999 9999999999999887 566777 9999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          134 LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       134 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      ||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..++.+++++|+++|+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999998   88999999999999999999999999998876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=7e-27  Score=226.70  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=129.4

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhcCCch--hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCC--CccCCCCCCCHH
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILRQKPRI--AEELDSRKSSALHIASQKGYVGIVKALLQVIPDK--CSDTDVDGRNPL  100 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpL  100 (434)
                      +.+++||||+||..|+.++|++|++.++..  ....|..|.||||+||..|+.+++++|++++++.  .+..+.+ .|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            344679999999999999999999998732  1234567889999999999999999999999752  1233333 8999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCcccc-cccCCCChHHHHHH-HcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCc
Q 041009          101 HLAAMRGHIDVLEELARAKPDAAS-ARLIWGETILHLCV-KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQ  178 (434)
Q Consensus       101 ~~Aa~~g~~~~v~~Ll~~~~~~~~-~~~~~g~t~Lh~A~-~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~  178 (434)
                      |+|+..|+.+++++|++++++... ..|..|.||||+|+ .+|+.+++++|++.|++          |+||||+|+..|+
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~----------~~taL~~Aa~~g~  237 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM----------LAYAEIHEFEYGE  237 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH----------HHHHHHCTTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc----------cchHHHHHHHCCC
Confidence            999999999999999999988633 26777999999999 99999999999986642          8899999999999


Q ss_pred             HHHHHHhhhcccccccc
Q 041009          179 IEAIKLLTTSTAIEVNA  195 (434)
Q Consensus       179 ~~iv~~Ll~~~~~~~~~  195 (434)
                      .+++++|+++++ +++.
T Consensus       238 ~evv~lL~~~ga-~~~~  253 (376)
T 2aja_A          238 KYVNPFIARHVN-RLKE  253 (376)
T ss_dssp             TTHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhcCc-cccc
Confidence            999999998875 4433

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.6e-25  Score=201.67  Aligned_cols=173  Identities=17%  Similarity=0.142  Sum_probs=144.1

Q ss_pred             HHHHHhcCCch--hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCc
Q 041009           44 AKEILRQKPRI--AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD  121 (434)
Q Consensus        44 v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~  121 (434)
                      ++.|++++++.  .+..+..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            46778877665  2445667889999999999999999999999987 78999999999999999999999999999988


Q ss_pred             ccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC-CCCCcHHHHH--HHcCcHHHHHHhhhccccccccccc
Q 041009          122 AASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD-DYGMTILHLA--VADKQIEAIKLLTTSTAIEVNAVTA  198 (434)
Q Consensus       122 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d-~~g~t~LhlA--~~~~~~~iv~~Ll~~~~~~~~~~n~  198 (434)
                      + +..|..|+||||+|+.+|+.+++++|++.|++   ++.+| .+|+||||+|  +..|+.+++++|++.|+ +++..|.
T Consensus        80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga-~~~~~~~  154 (229)
T 2vge_A           80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHGAA---IFATTLSDGATAFEKCDPYREGYADCATYLADVEQ-SMGLMNS  154 (229)
T ss_dssp             T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH-HTTTSGG
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC-CcccccC
Confidence            7 67788999999999999999999999999999   78876 6999999999  99999999999999988 9999999


Q ss_pred             CCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          199 NGFTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       199 ~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      .|.||++.++...       ..++|.+.|++
T Consensus       155 ~~~~~l~~~~~~~-------~~~~ll~~ga~  178 (229)
T 2vge_A          155 GAVYALWDYSAEF-------GDELSFREGES  178 (229)
T ss_dssp             GEEEESSCBCCSS-------TTBCCBCTTCE
T ss_pred             CchHHHHHHhhcc-------ccccCcccccc
Confidence            9999988544311       12455666665

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=9.7e-24  Score=171.87  Aligned_cols=124  Identities=38%  Similarity=0.566  Sum_probs=79.1

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  107 (434)
                      |+||||.|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence            666666666666666666666666655 555666666666666666666666666666655 555666666666666666


Q ss_pred             CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcC
Q 041009          108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG  154 (434)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  154 (434)
                      +.+++++|++++++. ...|..|.||||+|+..|+.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           80 HLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            666666666665554 4445556666666666666666666666554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=4.9e-24  Score=176.86  Aligned_cols=124  Identities=25%  Similarity=0.341  Sum_probs=69.9

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009           26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM  105 (434)
Q Consensus        26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~  105 (434)
                      ..|.||||+||..|+.++++.|++++.++ +..|..|+||||+|+..|+.+++++|++.+++. +..|..|.||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            33556666666666666666666665554 455555666666666666666666666655554 4455555555555555


Q ss_pred             hCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 041009          106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN  152 (434)
Q Consensus       106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  152 (434)
                      .|+.+++++|++++++. ...|.+|+||||+|+.+|+.+++++|++.
T Consensus        90 ~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            55555555555555544 34444555555555555555555555543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=7.3e-24  Score=175.80  Aligned_cols=128  Identities=27%  Similarity=0.356  Sum_probs=116.2

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHH
Q 041009           57 ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHL  136 (434)
Q Consensus        57 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  136 (434)
                      .....|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++++. +..|.+|.||||+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~   86 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHL   86 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence            34567889999999999999999999999887 788999999999999999999999999998887 6678889999999


Q ss_pred             HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcc
Q 041009          137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST  189 (434)
Q Consensus       137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~  189 (434)
                      |+.+|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.+++++|++.|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCC---CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999998   8899999999999999999999999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.9e-23  Score=170.12  Aligned_cols=125  Identities=42%  Similarity=0.605  Sum_probs=114.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHc
Q 041009           61 RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKH  140 (434)
Q Consensus        61 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  140 (434)
                      +|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++++. ...|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence            4899999999999999999999998887 778899999999999999999999999998887 66788899999999999


Q ss_pred             CCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       141 g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      |+.+++++|+++|++   ++.+|.+|+||||+|+..++.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999988   78899999999999999999999999998876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=5.6e-26  Score=220.35  Aligned_cols=207  Identities=15%  Similarity=0.154  Sum_probs=151.4

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCch--hhccCCCCCcHHHHHHHcCCHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRI--AEELDSRKSSALHIASQKGYVGIVK   79 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~   79 (434)
                      .|+.++++.|++.+.........|..|.||||+||..|+.++|++|++++++.  .+..+.+ .||||+||..|+.++++
T Consensus       102 ~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~  180 (376)
T 2aja_A          102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLN  180 (376)
T ss_dssp             HCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHH
Confidence            59999999999987632222334566889999999999999999999999752  1222222 99999999999999999


Q ss_pred             HHHhhCCCCCcc--CCCCCCCHHHHHH-HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCC
Q 041009           80 ALLQVIPDKCSD--TDVDGRNPLHLAA-MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDS  156 (434)
Q Consensus        80 ~Ll~~~~~~~~~--~d~~g~tpL~~Aa-~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  156 (434)
                      +|++++++. +.  .|..|.||||+|+ ..|+.+++++|++++.        .|.||||.|+++|+.+++++|++.|++ 
T Consensus       181 ~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~-  250 (376)
T 2aja_A          181 RLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNR-  250 (376)
T ss_dssp             HHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHH-
T ss_pred             HHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcc-
Confidence            999999886 44  7888999999999 9999999999998542        278999999999999999999998865 


Q ss_pred             ccccCCCCCCCcHHHHHHHc---------------------------CcHHHHHHhhhccccc----ccccccCCCCHHH
Q 041009          157 ELLNAKDDYGMTILHLAVAD---------------------------KQIEAIKLLTTSTAIE----VNAVTANGFTAWD  205 (434)
Q Consensus       157 ~~~~~~d~~g~t~LhlA~~~---------------------------~~~~iv~~Ll~~~~~~----~~~~n~~g~t~l~  205 (434)
                        ++.+|.    +++.|+..                           +..+.+++|++.+.++    .....+.+.||+|
T Consensus       251 --~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~  324 (376)
T 2aja_A          251 --LKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR  324 (376)
T ss_dssp             --HHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred             --cccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHH
Confidence              332221    22222222                           2344555555543322    1223446678888


Q ss_pred             HHHHccCCCchhHHHHHHHHcCCC
Q 041009          206 ILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       206 la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      +|+.    .+..+++++|++.|..
T Consensus       325 ~A~~----~g~~e~v~lLl~~~~v  344 (376)
T 2aja_A          325 LALR----LGNQGACALLLSIPSV  344 (376)
T ss_dssp             HHHH----HTCTTHHHHHTTSHHH
T ss_pred             HHHH----cCcHHHHHHHHcChHH
Confidence            8888    5567788888877643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=1.6e-24  Score=189.74  Aligned_cols=154  Identities=16%  Similarity=0.050  Sum_probs=135.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH----HHHHHHHHhCCcccccccCCCChHHHHH
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI----DVLEELARAKPDAASARLIWGETILHLC  137 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  137 (434)
                      +.++|+.|+..|+.+.++.+++.+.+.  ..|..|+||||+|+.+|+.    +++++|+++|+++ +.+|.+|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            568999999999999999999987543  2237799999999999975    5999999999998 67789999999999


Q ss_pred             HHcCC------HHHHHHHHHhcCCCccccCCCCCCC-cHHHHHHHcC-----cHHHHHHhhh-cccccccccccCCCCHH
Q 041009          138 VKHNQ------LEALKFLLENMGDSELLNAKDDYGM-TILHLAVADK-----QIEAIKLLTT-STAIEVNAVTANGFTAW  204 (434)
Q Consensus       138 ~~~g~------~~~v~~Ll~~~~~~~~~~~~d~~g~-t~LhlA~~~~-----~~~iv~~Ll~-~~~~~~~~~n~~g~t~l  204 (434)
                      +..|+      .+++++|+++|++   +|.+|.+|+ ||||+|+..+     ..+++++|++ +|+ |++.+|..|.|||
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga-d~~~~d~~G~TpL  158 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL-QLLIKDKWGLTAL  158 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC-CTTCCCTTSCCHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC-CCcccCCCCCCHH
Confidence            99987      5789999999999   999999999 9999999844     4579999999 777 9999999999999


Q ss_pred             HHHHHccCCCchhHHHHHHHHc
Q 041009          205 DILAQSKRDTKDWDIGELLRRA  226 (434)
Q Consensus       205 ~la~~~~~~~~~~~i~~~L~~~  226 (434)
                      |+|++    .+..+++++|.+.
T Consensus       159 ~~A~~----~~~~~~v~~L~~~  176 (186)
T 3t8k_A          159 EFVKR----CQKPIALKMMEDY  176 (186)
T ss_dssp             HHHHT----TTCHHHHHHHHHH
T ss_pred             HHHHH----cCCHHHHHHHHHH
Confidence            99998    6667888888754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.5e-23  Score=174.09  Aligned_cols=127  Identities=28%  Similarity=0.315  Sum_probs=84.5

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHH
Q 041009           57 ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHL  136 (434)
Q Consensus        57 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  136 (434)
                      .+|..|+||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|++++.+. +..|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence            34566666666666666666666666666655 556666666666666666666666666666655 4556667777777


Q ss_pred             HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhc
Q 041009          137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS  188 (434)
Q Consensus       137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~  188 (434)
                      |+..|+.+++++|++.|++   ++.+|.+|+||||+|+..+..+++++|.+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            7777777777777777776   667777777777777777666666666544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=1.7e-23  Score=182.81  Aligned_cols=140  Identities=21%  Similarity=0.170  Sum_probs=110.7

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCC-CCCCCHHHHH
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD-VDGRNPLHLA  103 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpL~~A  103 (434)
                      +..|+||||.|+..|+.++++.|++ +.++ +..|..|+||||+|+..|+.+++++|++.++++ +..| ..|.||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            4467888888888888888888888 6655 777888888888888888888888888888877 5555 7788888888


Q ss_pred             HHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHH
Q 041009          104 AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK  183 (434)
Q Consensus       104 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~  183 (434)
                      +..|+.+++++|+++++++ +.+|.+|+||||+|++.++.                    ..+.++|++|+..|+.++++
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~~~~i~~  176 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGLEKVIN  176 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcCHHHHHH
Confidence            8888888888888888776 56678888888888764321                    34678888888888888888


Q ss_pred             Hhhhc
Q 041009          184 LLTTS  188 (434)
Q Consensus       184 ~Ll~~  188 (434)
                      +|.++
T Consensus       177 ~L~~~  181 (183)
T 3deo_A          177 VLEGQ  181 (183)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            87653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=2.1e-23  Score=190.92  Aligned_cols=139  Identities=22%  Similarity=0.180  Sum_probs=88.8

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCC-CCCCCHHHHHH
Q 041009           26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD-VDGRNPLHLAA  104 (434)
Q Consensus        26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpL~~Aa  104 (434)
                      ..|.||||+||..|+.++++.|++ +.++ +..|..|+||||+|+..|+.+++++|++.++++ +.+| ..|.||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence            346667777777777777776666 5544 566666677777777767777777777666665 4444 56666777666


Q ss_pred             HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009          105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL  184 (434)
Q Consensus       105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~  184 (434)
                      ..|+.+++++|+++++++ +.+|..|+||||+|++.++                    +..+.||||+|+..|+.+++++
T Consensus       120 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~--------------------~~~~~~~l~~a~~~g~~~iv~~  178 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILK--------------------TTPKGNPMQFGRRIGLEKVINV  178 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT--------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh--------------------ccCCCCHHHHHHHcChHHHHHH
Confidence            666666666666666665 4556666666666664211                    1345666666666666666666


Q ss_pred             hhhc
Q 041009          185 LTTS  188 (434)
Q Consensus       185 Ll~~  188 (434)
                      |.++
T Consensus       179 L~~~  182 (244)
T 3ui2_A          179 LEGQ  182 (244)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=5.1e-23  Score=194.20  Aligned_cols=139  Identities=19%  Similarity=0.125  Sum_probs=108.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCCcc-----CCCCCCCHHHHHHHh---CCHHHHHHHHHhCCcccccccCCCCh
Q 041009           61 RKSSALHIASQKGYVGIVKALLQVIPDKCSD-----TDVDGRNPLHLAAMR---GHIDVLEELARAKPDAASARLIWGET  132 (434)
Q Consensus        61 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t  132 (434)
                      .+.++||.|+..|+.+.++.|++.+.++...     .|..|.||||+|+..   |+.+++++|+++++++ +.+|.+|+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence            3456788888888888888888888776322     577888888888886   7888888888888876 566778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHc
Q 041009          133 ILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQS  210 (434)
Q Consensus       133 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~  210 (434)
                      |||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|+..++.+++++|+++++ +      .|.||+|+|+..
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga-~------~g~tpLh~A~~~  296 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQA-G------TFAFPLHVDYSW  296 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH-H------TTSSCCC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-C------CCCChhHHHHhc
Confidence            88888888888888888888888   78888888888888888888888888888877 4      477888888763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=2.1e-24  Score=197.65  Aligned_cols=172  Identities=20%  Similarity=0.101  Sum_probs=144.7

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  106 (434)
                      .+.+++.+++..|+.+.+..+...+.+    .+..|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+..
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~   87 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGL   87 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHH----HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHH
T ss_pred             CCccHHHHHHHcCCCcccccccccccc----cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHC
Confidence            355677777777776655544443333    35679999999999999999999999 7766 88999999999999999


Q ss_pred             CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009          107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT  186 (434)
Q Consensus       107 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll  186 (434)
                      |+.+++++|+++++++....+..|+||||+|+.+|+.+++++|+++|++   ++.+|..|+||||+|+..+         
T Consensus        88 g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~---------  155 (244)
T 3ui2_A           88 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREIL---------  155 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHH---------
T ss_pred             CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHH---------
Confidence            9999999999999998544448899999999999999999999999999   8999999999999998532         


Q ss_pred             hcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          187 TSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       187 ~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                               .+..+.||+++|+.    .+..+++++|.+.+..
T Consensus       156 ---------~~~~~~~~l~~a~~----~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          156 ---------KTTPKGNPMQFGRR----IGLEKVINVLEGQVFE  185 (244)
T ss_dssp             ---------TTCCCSSHHHHHHH----HHHHHHHHHHHHHHEE
T ss_pred             ---------hccCCCCHHHHHHH----cChHHHHHHHHHhccc
Confidence                     13578999999999    7778899999986554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=7.7e-23  Score=178.64  Aligned_cols=142  Identities=23%  Similarity=0.188  Sum_probs=126.3

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHH
Q 041009           58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC  137 (434)
Q Consensus        58 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  137 (434)
                      .|..|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+..|+.+++++|+++++++....+.+|+||||+|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            36689999999999999999999999 7766 889999999999999999999999999999998544448899999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchh
Q 041009          138 VKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDW  217 (434)
Q Consensus       138 ~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~  217 (434)
                      +..|+.+++++|+++|++   ++.+|.+|+||||+|+..++                  ...+.+++++++.    .+..
T Consensus       118 ~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~----~~~~  172 (183)
T 3deo_A          118 AGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILK------------------TTPKGNPMQFGRR----IGLE  172 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHH----HHHH
T ss_pred             HhcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHH----cCHH
Confidence            999999999999999999   88999999999999987432                  2457899999998    6778


Q ss_pred             HHHHHHHHc
Q 041009          218 DIGELLRRA  226 (434)
Q Consensus       218 ~i~~~L~~~  226 (434)
                      +++++|.+.
T Consensus       173 ~i~~~L~~~  181 (183)
T 3deo_A          173 KVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            899988753

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=5.1e-23  Score=170.80  Aligned_cols=128  Identities=25%  Similarity=0.283  Sum_probs=114.7

Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHH
Q 041009           91 DTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTIL  170 (434)
Q Consensus        91 ~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L  170 (434)
                      .+|.+|.||||+|+..|+.+++++|++++++. +..|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence            57899999999999999999999999999887 67788999999999999999999999999998   899999999999


Q ss_pred             HHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcC
Q 041009          171 HLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG  227 (434)
Q Consensus       171 hlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g  227 (434)
                      |+|+..|+.+++++|+++|+ +++.+|.+|.||+|+|..    .+..++++++.+.+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~----~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSYGA-SRNAVNIFGLRPVDYTDD----ESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCGGGGCCC----HHHHHHHSCC----
T ss_pred             HHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHhh----ccHHHHHhhccccc
Confidence            99999999999999999988 999999999999999876    55566666655543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=6.2e-23  Score=184.84  Aligned_cols=170  Identities=16%  Similarity=0.168  Sum_probs=125.1

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhcC--------------CchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCc
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILRQK--------------PRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS   90 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~--------------~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~   90 (434)
                      +..++++.+++...|+...+..+.+.+              ....+..|..|.||||+|+..|+.+++++|++.+.++ +
T Consensus        22 d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~  100 (222)
T 3ehr_A           22 TFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-N  100 (222)
T ss_dssp             CCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-T
T ss_pred             CcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCCCc-c
Confidence            444566666666666654333222111              0123455778899999999999999999999998887 7


Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHHHh-CCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcH
Q 041009           91 DTDVDGRNPLHLAAMRGHIDVLEELARA-KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTI  169 (434)
Q Consensus        91 ~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~  169 (434)
                      .+|..|.||||+|+..|+.+++++|++. +.+. +..|.+|+||||+|+..|+.+++++|++.|++   ++.+|.+|+||
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~  176 (222)
T 3ehr_A          101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLA  176 (222)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CccccCCCCCH
Confidence            8899999999999999999999999998 6665 67788899999999999999999999999998   88899999999


Q ss_pred             HHHHHHcCcHHHHHHhhhcccccccccccCC
Q 041009          170 LHLAVADKQIEAIKLLTTSTAIEVNAVTANG  200 (434)
Q Consensus       170 LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g  200 (434)
                      ||+|+..++.++++.|++.++ +.+..|.+|
T Consensus       177 l~~A~~~~~~~~l~~l~~~~~-~~~~~~~~~  206 (222)
T 3ehr_A          177 FDMATNAACASLLKKKQGTDA-VRTLSNAED  206 (222)
T ss_dssp             HHHCCSHHHHHHHC-----------------
T ss_pred             HHHhcchhHHHHHHHHhccch-hhhccchhh
Confidence            999999999999999998877 555555443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=1.6e-22  Score=164.52  Aligned_cols=109  Identities=20%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009           26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM  105 (434)
Q Consensus        26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~  105 (434)
                      ..|+||||+|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            34556666666666666666666655554 455555666666666666666666666555554 4555555555555555


Q ss_pred             hCCHHHHHHHHHhCCcccccccCCCChHHHHH
Q 041009          106 RGHIDVLEELARAKPDAASARLIWGETILHLC  137 (434)
Q Consensus       106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  137 (434)
                      .|+.+++++|++++++. ..+|.+|.||||+|
T Consensus        83 ~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADK-TVKGPDGLTAFEAT  113 (123)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHC
T ss_pred             cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHh
Confidence            55555555555555544 34445555555555

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=9.2e-23  Score=183.74  Aligned_cols=136  Identities=25%  Similarity=0.249  Sum_probs=113.2

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhh-CCCCCccCCCCCCCHHHHH
Q 041009           25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNPLHLA  103 (434)
Q Consensus        25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpL~~A  103 (434)
                      +..|.||||+||..|+.++++.|++.+.++ +.+|..|+||||+|+..|+.+++++|++. +.+. +.+|..|.||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHH
Confidence            456899999999999999999999999887 78899999999999999999999999999 6666 88999999999999


Q ss_pred             HHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC
Q 041009          104 AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD  163 (434)
Q Consensus       104 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d  163 (434)
                      +..|+.+++++|++++++. +.+|.+|.||||+|+..|+.++++.+++.++...+.+..+
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            9999999999999999987 6788999999999999999999999999998855444443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=3e-22  Score=162.90  Aligned_cols=112  Identities=27%  Similarity=0.241  Sum_probs=91.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 041009           59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV  138 (434)
Q Consensus        59 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  138 (434)
                      +..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            566788888888888888888888888776 778888888888888888888888888888776 566778888888888


Q ss_pred             HcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHH
Q 041009          139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA  175 (434)
Q Consensus       139 ~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~  175 (434)
                      ..|+.+++++|+++|++   ++.+|.+|+||||+|..
T Consensus        82 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCC
T ss_pred             HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCC
Confidence            88888888888888887   77888888888888843

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=2.6e-21  Score=182.45  Aligned_cols=126  Identities=31%  Similarity=0.304  Sum_probs=78.4

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCccccc-----ccCCCChHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCCC
Q 041009           96 GRNPLHLAAMRGHIDVLEELARAKPDAASA-----RLIWGETILHLCVKH---NQLEALKFLLENMGDSELLNAKDDYGM  167 (434)
Q Consensus        96 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~d~~g~  167 (434)
                      +.++|+.|+..|+.+.++.|++.++++...     .+..|+||||+|+..   |+.+++++|++.|++   ++.+|.+|+
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---vn~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC---TTCCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC---CCCCCCCCC
Confidence            445666666666666666666666655322     355566666666665   566666666666666   566666666


Q ss_pred             cHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          168 TILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       168 t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      ||||+|+..|+.+++++|+++|+ +++.+|.+|.||||+|+.    .+..+++++|+++|++
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~----~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRA-LVGTVNEAGETALDIARK----KHHKECEELLEQAQAG  284 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC-CCSCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCC
Confidence            66666666666666666666655 666666666666666666    4445666666666655

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1e-20  Score=176.45  Aligned_cols=196  Identities=23%  Similarity=0.214  Sum_probs=132.9

Q ss_pred             ccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHH
Q 041009           23 TVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHL  102 (434)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~  102 (434)
                      ..|..+.+.++.+...|+..+.+.+-..-+.........+....    .....-..+++...........+....++|+.
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~  136 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCE  136 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence            45677788888888888776665554332221000001111111    11111112222222211111112223468888


Q ss_pred             HHHhCCHHHHHHHHHhCCccc-----ccccCCCChHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHH
Q 041009          103 AAMRGHIDVLEELARAKPDAA-----SARLIWGETILHLCVKH---NQLEALKFLLENMGDSELLNAKDDYGMTILHLAV  174 (434)
Q Consensus       103 Aa~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~  174 (434)
                      |+..|+.+.++.+++.+++..     ...+..|+||||+|+.+   |+.+++++|+++|++   +|.+|.+|+||||+|+
T Consensus       137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~---in~~d~~g~TpLh~A~  213 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTALHYCC  213 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCCCHHHHHH
T ss_pred             HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC---ccccCCCCCCHHHHHH
Confidence            888888888888888888753     33367788999999888   788889999988888   8888888999999999


Q ss_pred             HcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009          175 ADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       175 ~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                      ..|+.+++++|+++|+ +++.+|.+|.||||+|+.    .+..+++++|.++|+..
T Consensus       214 ~~g~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          214 LTDNAECLKLLLRGKA-SIEIANESGETPLDIAKR----LKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCC-CCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence            9999999999988877 888888899999998888    66678888888887753

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.3e-20  Score=182.10  Aligned_cols=148  Identities=20%  Similarity=0.126  Sum_probs=111.5

Q ss_pred             ccCCCCCcHHHHHHHc-CCHHHHHHHHhhCCCCCccCC--CCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChH
Q 041009           57 ELDSRKSSALHIASQK-GYVGIVKALLQVIPDKCSDTD--VDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETI  133 (434)
Q Consensus        57 ~~d~~g~tpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  133 (434)
                      ..+..+.||||.|+.. |+.++++.|++.++++ +..|  ..|.||||+|+..|+.+++++|+++++++ +..|.+|+||
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~Tp  271 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGP  271 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence            3455678899999998 9999999999998887 6666  78999999999999999999999998887 6778889999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccc--cccccccCCCCHHHHHHH
Q 041009          134 LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAI--EVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       134 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~--~~~~~n~~g~t~l~la~~  209 (434)
                      ||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.+++++|++.+..  +....+..+.|+++++..
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            9999999999999999999988   888999999999999999999999999877642  334556788899998766

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=4e-20  Score=142.42  Aligned_cols=92  Identities=37%  Similarity=0.566  Sum_probs=74.5

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  106 (434)
                      +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            3778888888888888888888888776 777888888888888888888888888888776 67788888888888888


Q ss_pred             CCHHHHHHHHHhCC
Q 041009          107 GHIDVLEELARAKP  120 (434)
Q Consensus       107 g~~~~v~~Ll~~~~  120 (434)
                      |+.+++++|+++++
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            88888888887765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=3.1e-20  Score=179.34  Aligned_cols=143  Identities=17%  Similarity=0.132  Sum_probs=77.8

Q ss_pred             CCHHHHHHhc-CCHHHHHHHHhcCCchhhccC--CCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009           29 ETPLHVAALL-GHEDFAKEILRQKPRIAEELD--SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM  105 (434)
Q Consensus        29 ~t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~  105 (434)
                      .|+||.|+.. |+.++++.|+++++++ +..|  ..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+.
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATI  277 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            3566666666 6666666666666655 4444  56666666666666666666666666655 5566666666666666


Q ss_pred             hCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHH
Q 041009          106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV  174 (434)
Q Consensus       106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~  174 (434)
                      .|+.+++++|+++++++ +..|.+|.||||+|+..|+.+++++|++.+.........+..+.|+++++.
T Consensus       278 ~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          278 LGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             cCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            66666666666666655 455566666666666666666666666655432223334445556655544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=2.6e-19  Score=166.88  Aligned_cols=128  Identities=21%  Similarity=0.214  Sum_probs=105.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCCCCC-----ccCCCCCCCHHHHHHHh---CCHHHHHHHHHhCCcccccccCCC
Q 041009           59 DSRKSSALHIASQKGYVGIVKALLQVIPDKC-----SDTDVDGRNPLHLAAMR---GHIDVLEELARAKPDAASARLIWG  130 (434)
Q Consensus        59 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g  130 (434)
                      +....++|+.|+..|+.+.++.+++.+.+..     +..|..|.||||+|+..   |+.+++++|+++++++ +.+|.+|
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g  205 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKG  205 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTC
T ss_pred             cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCC
Confidence            3445678888888888888888888887752     33477888888888888   7888888888888876 5667788


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          131 ETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       131 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      +||||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|+++++
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            8888888888888888888888888   78888888888888888888888888888876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=2.2e-19  Score=138.24  Aligned_cols=91  Identities=40%  Similarity=0.594  Sum_probs=53.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN  141 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  141 (434)
                      |+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++. +.+|.+|+||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence            556666666666666666666665554 555566666666666666666666666655554 444555555555555555


Q ss_pred             CHHHHHHHHHhcC
Q 041009          142 QLEALKFLLENMG  154 (434)
Q Consensus       142 ~~~~v~~Ll~~~~  154 (434)
                      +.+++++|++.|+
T Consensus        80 ~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           80 HLEVVKLLLEAGA   92 (93)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            5555555555554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.5e-19  Score=144.91  Aligned_cols=108  Identities=36%  Similarity=0.436  Sum_probs=71.6

Q ss_pred             CCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHH
Q 041009           92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILH  171 (434)
Q Consensus        92 ~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~Lh  171 (434)
                      +|.+|.||||+|+..|+.++++.|++++++. +..|..|+||||+|+..|+.+++++|++.|++   ++.+|..|+||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHHH
Confidence            5566666666666666666666666666554 44556666777777777777777777776666   6666777777777


Q ss_pred             HHHHcCcHHHHHHhhhcccccccccccCCCCHH
Q 041009          172 LAVADKQIEAIKLLTTSTAIEVNAVTANGFTAW  204 (434)
Q Consensus       172 lA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l  204 (434)
                      +|+..++.+++++|+++|+ +++..+..|.||-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga-~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGA-DVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSS-SHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCC-CCCcCCccccccc
Confidence            7777777777777777766 7777777776663

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=1.9e-19  Score=144.33  Aligned_cols=107  Identities=30%  Similarity=0.379  Sum_probs=64.5

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 041009           24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA  103 (434)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A  103 (434)
                      .|.+|.||||+|+..|+.++++.|+++++++ +..|..|.||||+|+..|+.+++++|++.+++. +.+|..|.||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            3555666666666666666666666666654 555666666666666666666666666666554 55566666666666


Q ss_pred             HHhCCHHHHHHHHHhCCcccccccCCCChH
Q 041009          104 AMRGHIDVLEELARAKPDAASARLIWGETI  133 (434)
Q Consensus       104 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  133 (434)
                      +..|+.+++++|+++++++ +..+..|.+|
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADV-NARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence            6666666666666666555 3344444443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2.5e-17  Score=130.97  Aligned_cols=92  Identities=24%  Similarity=0.326  Sum_probs=69.3

Q ss_pred             cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHH
Q 041009           22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLH  101 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~  101 (434)
                      ...|.+|.||||+|+..|+.++++.|++.++++ +..|..|+||||+|+..|+.+++++|++.+++. +.+|..|.||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHH
Confidence            345667788888888888888888888877766 666778888888888888888888888887776 677777888888


Q ss_pred             HHHHhCCHHHHHHH
Q 041009          102 LAAMRGHIDVLEEL  115 (434)
Q Consensus       102 ~Aa~~g~~~~v~~L  115 (434)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            88888888877765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=1e-16  Score=127.31  Aligned_cols=92  Identities=27%  Similarity=0.403  Sum_probs=60.6

Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHH
Q 041009           56 EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILH  135 (434)
Q Consensus        56 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  135 (434)
                      ...|.+|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++. +..|..|+||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHH
Confidence            445667777777777777777777777776665 566667777777777777777777777666654 445666666666


Q ss_pred             HHHHcCCHHHHHHH
Q 041009          136 LCVKHNQLEALKFL  149 (434)
Q Consensus       136 ~A~~~g~~~~v~~L  149 (434)
                      +|+.+|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            66666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 1e-21
 Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 38/209 (18%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLHVA+ +GH    K +L++        + +  + LH+A++ G+  + K LLQ      
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV- 59

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAA-------------------------- 123
           +    D + PLH AA  GH ++++ L     +                            
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 124 ------SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADK 177
                 +     G T LH+  K+ ++   + LLE        NA    G+T LH+AV   
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKNGLTPLHVAVHHN 176

Query: 178 QIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
            ++ +KLL        ++   NG+T   I
Sbjct: 177 NLDIVKLLLPRGG-SPHSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 3e-16
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 11/196 (5%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            TPLH+AA     + A+ +L+       E   +  + LH+A+Q+G+  +V  L       
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALL-LSKQAN 256

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
            +  +  G  PLHL A  GH+ V + L +       A    G T LH+   +  ++ +KF
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKF 315

Query: 149 LLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILA 208
           LL++  D    NAK   G + LH A      + + LL  + A   N V+++G T   I  
Sbjct: 316 LLQHQADV---NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-SPNEVSSDGTTPLAIAK 371

Query: 209 QSKRDTKDWDIGELLR 224
           +         + ++L+
Sbjct: 372 RLGYI----SVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 4e-16
 Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 37/194 (19%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAAS 124
            LH+AS  G++ IVK LLQ        ++V    PLH+AA  GH +V + L + K    +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQNKAK-VN 60

Query: 125 ARLIWGETILHLCVKHNQLEALKFLLENMGDSE--------------------------- 157
           A+    +T LH   +      +K LLEN  +                             
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 158 ---LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDT 214
                      G T LH+A    ++   +LL    A   NA   NG T   +        
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHVAVHH---- 175

Query: 215 KDWDIGELLRRAGA 228
            + DI +LL   G 
Sbjct: 176 NNLDIVKLLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           +    TPLH+AA  GH +    +L ++       +    + LH+ +Q+G+V +   L++ 
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKH 286

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
                + T   G  PLH+A+  G+I ++ +         +A+   G + LH   +    +
Sbjct: 287 GVMVDATTR-MGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
            +  LL+N       N     G T L +A     I    +L
Sbjct: 345 IVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 2e-15
 Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 42/232 (18%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIA--------------------------------E 56
           +TPLH AA +GH +  K +L                                        
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 126

Query: 57  ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELA 116
            +  +  + LH+A++ G V + + LL+      +    +G  PLH+A    ++D+++ L 
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 117 RAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD 176
                   +    G T LH+  K NQ+E  + LL+  G +   NA+   G+T LHLA  +
Sbjct: 186 PRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA---NAESVQGVTPLHLAAQE 241

Query: 177 KQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
              E +  L  S     N    +G T   ++AQ         + ++L + G 
Sbjct: 242 GHAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGH----VPVADVLIKHGV 288

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 4e-13
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 3/140 (2%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
           TPLH+ A  GH   A  +++    + +       + LH+AS  G + +VK  L       
Sbjct: 266 TPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVK-FLLQHQADV 323

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
           +     G +PLH AA +GH D++  L +      +     G T L +  +   +     L
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL 382

Query: 150 LENMGDSELLNAKDDYGMTI 169
                ++  +   D + M+ 
Sbjct: 383 KVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
              L  +PLH AA  GH D    +L+       E+ S  ++ L IA + GY+ +   +L+
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTD-VLK 383

Query: 84  VIPDKCSDTDVDGRNPL 100
           V+ D+ S   V  ++ +
Sbjct: 384 VVTDETSFVLVSDKHRM 400

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 3e-17
 Identities = 59/252 (23%), Positives = 89/252 (35%), Gaps = 53/252 (21%)

Query: 29  ETPLHVAALLGHEDFAKEILR--------------------------------QKPRIAE 56
            TPLH A  +  ED  + +LR                                 K     
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99

Query: 57  ELDSRKSSALHIASQKGYVGIVKALLQVIPDK---------CSDTDVDGRNPLHLAAMRG 107
           E D    +A   A+  G V  +K L +   +                 G   L  AA +G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 108 HIDVLEEL---ARAKPDAASARLIWGETILHLCVKHNQLEAL-KFLLENMGDSELLNAKD 163
           H++VL+ L     A  +A             L    + +EA+   LL++  D   +N + 
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRG 216

Query: 164 DYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELL 223
           + G T L LAV  K +  ++ L     IE+N   ++G TA  +  + K       I ELL
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK----KIAELL 272

Query: 224 RRAGA-ISAQDL 234
            + GA     DL
Sbjct: 273 CKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 6e-14
 Identities = 46/213 (21%), Positives = 76/213 (35%), Gaps = 10/213 (4%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
              L  A      D  +++L     +  + +    + LH A Q     IV+ LL+   D 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 89  CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
                        LAA+ G + +  +L  +K    +    +G T       + +++ALKF
Sbjct: 66  VLRKKNGATPF-LLAAIAGSVKL-LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 149 LLENMGD-------SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
           L +   +        E        G T L  A     +E +K+L      +VNA    G 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 202 TAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
            A      S  D+    I  LL   GA ++ + 
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 94  VDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENM 153
           V+  + L  A     +D++++L     +        G T LH  V+ ++ + ++ LL + 
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.6 bits (192), Expect = 7e-17
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 17/191 (8%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGY---VGIVKALLQVIP 86
           TPLH    + + +  K +++         D+   S L  A +       G  +ALL  + 
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI------------WGETIL 134
                 D   R  LH   +   +      A+   D     ++              E+  
Sbjct: 168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP 227

Query: 135 HLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVN 194
           +      +   L+ L      + +LNA+D  G T L++A     I  +  L    A +  
Sbjct: 228 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA-DPF 286

Query: 195 AVTANGFTAWD 205
               +G    D
Sbjct: 287 IANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 12/235 (5%)

Query: 11  LRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIAS 70
           ++     +V         E  L        ++    +         E  S      H++ 
Sbjct: 22  MKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 81

Query: 71  QKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG 130
                 +  A      +     D  G  PLH      ++++++ L +   +      +  
Sbjct: 82  DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 141

Query: 131 ETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEA--------- 181
             ++      N  ++  F          L  +D    TILH  +    +           
Sbjct: 142 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL 201

Query: 182 ---IKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD 233
              +  +       + + T    +  +     ++D+   ++      A  ++AQD
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD 256

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 77.2 bits (189), Expect = 3e-16
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 13/181 (7%)

Query: 18  IVERPTVNCLSETPLHVAALLGHEDFAKEILR----------QKPRIAEELDSRKSSALH 67
            +   T++      + +      E   + +            Q    A +   +      
Sbjct: 36  ELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICF 95

Query: 68  IASQKGYVGIVKALLQVIPDKCS--DTDVDGRNPLHLAAMRGHIDVLEELARAKPDA-AS 124
           +A+  G    +  L  ++           +      LAA  GH+ VL  L    P    +
Sbjct: 96  VAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 155

Query: 125 ARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL 184
                      L  ++  L  L  L E          + +        AV       I  
Sbjct: 156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 215

Query: 185 L 185
           L
Sbjct: 216 L 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.4 bits (148), Expect = 5e-11
 Identities = 25/177 (14%), Positives = 48/177 (27%), Gaps = 22/177 (12%)

Query: 11  LRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIAS 70
           L +  P                  A   GH +    +L     +A         A     
Sbjct: 180 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY--------AEIHEF 231

Query: 71  QKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG 130
           + G   +   + +       +   +  +   L+   G  D++ +       +   +  + 
Sbjct: 232 EYGEKYVNPFIAR-----HVNRLKEMHDAFKLSNPDGVFDLVTK-------SECLQGFYM 279

Query: 131 ETILHLCVKHNQLEALKFLLENMGDSELL--NAKDDYGMTILHLAVADKQIEAIKLL 185
              L        L+ ++FLL   G   L            +L LA+      A  LL
Sbjct: 280 LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 59.9 bits (144), Expect = 2e-10
 Identities = 20/212 (9%), Positives = 51/212 (24%), Gaps = 15/212 (7%)

Query: 28  SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           ++  L +   +  E+  +  +         L  +++  + +   K    + + L      
Sbjct: 12  NDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAH 71

Query: 88  KCSDT----------DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI--WGETILH 135
              +            +       +AA+ G    L+ L          ++I         
Sbjct: 72  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR 131

Query: 136 LCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNA 195
           L  ++  L  L  L E      +             LA  +  +  +  L          
Sbjct: 132 LAAENGHLHVLNRLCELAPTEIMAM-IQAENYHAFRLAAENGHLHVLNRLCELAP-TEAT 189

Query: 196 VTANGFTAWDILAQSKRDTKDWDIGELLRRAG 227
                   +     +       ++   L    
Sbjct: 190 AMIQAENYYAFRWAAVGR-GHHNVINFLLDCP 220

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 18/134 (13%), Positives = 30/134 (22%), Gaps = 16/134 (11%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
             +           G +     I R   R+ E        A  +++  G   +V      
Sbjct: 220 PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE-----MHDAFKLSNPDGVFDLVTKSE-- 272

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIW----GETILHLCVKH 140
                          L        +D +  L       A A           +L L ++ 
Sbjct: 273 -----CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 141 NQLEALKFLLENMG 154
               A   LL    
Sbjct: 328 GNQGACALLLSIPS 341

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 20/184 (10%), Positives = 44/184 (23%), Gaps = 15/184 (8%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
           +      L +     +  + +  +                 + L   +    V + L   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 119 KPD----------AASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMT 168
                         A  + I  E I  +        AL  L   +   E++         
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 128

Query: 169 ILHLAVADKQIEAIKLLTTSTA-IEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG 227
              LA  +  +  +  L        +  + A  + A+ + A+         +   L    
Sbjct: 129 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE----NGHLHVLNRLCELA 184

Query: 228 AISA 231
              A
Sbjct: 185 PTEA 188

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 3e-15
 Identities = 41/220 (18%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 26  CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG------------ 73
           C+S   +   A  G  +  KE +     +A   D    +ALH A   G            
Sbjct: 1   CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 74  --------------------YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLE 113
                                   +   L     + +  + +G  PLH AA +   ++  
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 114 ELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173
            L     +   A+  +  T +H       L+ +  LL         N +D  G T LHLA
Sbjct: 121 MLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNTPLHLA 176

Query: 174 VADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRD 213
             ++++E  KLL +  A  +        T   +       
Sbjct: 177 CDEERVEEAKLLVSQGA-SIYIENKEEKTPLQVAKGGLGL 215

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 7e-12
 Identities = 40/215 (18%), Positives = 69/215 (32%), Gaps = 40/215 (18%)

Query: 3   GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDF------------------- 43
           G +  L E    D  +  R   +  S T LH A   GH +                    
Sbjct: 14  GKLEELKESILADKSLATRTDQD--SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 71

Query: 44  -------------AKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
                          + L  K      ++    + LH A+ K    I   LL+   +  +
Sbjct: 72  SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 131

Query: 91  DTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLL 150
             D      +H AA +G++ ++  L   K    + +   G T LHL     ++E  K L+
Sbjct: 132 -KDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLV 189

Query: 151 ENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
                   +  ++    T L +A        +K +
Sbjct: 190 SQGAS---IYIENKEEKTPLQVA-KGGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 44/201 (21%), Positives = 64/201 (31%), Gaps = 41/201 (20%)

Query: 66  LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI---------------- 109
           +   +  G +  +K  +       + TD D R  LH A   GH                 
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 110 -----DVLEELARAKPDAASARLIW-----------GETILHLCVKHNQLEALKFLLENM 153
                  L   A A  D     L+            G T LH     N+ E    LLE  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 154 GDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRD 213
            +    +AKD Y  T +H A A   ++ I +L        N     G T   +    +R 
Sbjct: 127 AN---PDAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEER- 181

Query: 214 TKDWDIGELLRRAGA-ISAQD 233
               +  +LL   GA I  ++
Sbjct: 182 ---VEEAKLLVSQGASIYIEN 199

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 24  VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
           VN    TPLH AA     + A  +L       +  D  +++A+H A+ KG + ++  LL 
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLY 157

Query: 84  VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQL 143
                    D +G  PLHLA     ++  + L               +T L +       
Sbjct: 158 YKASTNI-QDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVAKGGL-G 214

Query: 144 EALKFLLE 151
             LK ++E
Sbjct: 215 LILKRMVE 222

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.9 bits (146), Expect = 4e-11
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
               GR  LH AA   ++ +++ L   K      +   G+T + L  +  ++E + +L++
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
                  + A D    T   LA A+     + + 
Sbjct: 243 QGAS---VEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (145), Expect = 6e-11
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
                T LH AA + +    K ++ +K    ++ D    + + +A+Q+G + +V  L+Q 
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAK 119
                   D        LA    H ++++   R +
Sbjct: 244 GAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 59  DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
             +  +ALH A+Q   + IVK L+          D DG+ P+ LAA  G I+V+  L + 
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
                 A      T   L   +N    +     
Sbjct: 244 GAS-VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 8e-08
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 98  NPLHLA-AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDS 156
           +P+ L     G   + E + R   +    R     T+LH    ++  E  + L+ +    
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPR--HNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 157 EL-----LNAKDDYGMTILH 171
            +     +NA D    T L 
Sbjct: 60  CIAAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 11/154 (7%)

Query: 29  ETPLHVA-ALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
           E+P+ +     G     + I R+   I +   +R  + LH  +        + L+     
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNR--TVLHWIASNSSAEKSEDLIVHEAK 58

Query: 88  KCSD-------TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKH 140
           +C          D D   PL LA +     ++  L +A  D           + H    +
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAAN 117

Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
                + ++L +      +   D  GMT L +  
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 151

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 125 ARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL 184
           +    G T LH   + + +  +K+L+   G ++  + +D+ G T + LA  + +IE +  
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK--DKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 185 LTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA 226
           L    A  V AV A   TA  +   +       +I ++  R 
Sbjct: 240 LIQQGA-SVEAVDATDHTARQLAQANNHH----NIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 131 ETILHLCVKHNQLEALKFLLENMGDSELLNAKDD-YGMTILHLAVADKQIEAIKLLTTST 189
           E+ + L  +     A+   +        +N  D  +  T+LH   ++   E  + L    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRES----VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE 56

Query: 190 AIE-------VNAVTANGFTAW 204
           A E       VNA+  +  T  
Sbjct: 57  AKECIAAGADVNAMDCDENTPL 78

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.6 bits (140), Expect = 3e-10
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 92  TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
               G   LH+AA +G+ +VL+ L +A+ D  + +   G T LH      + EA + L+E
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 152 NMGDSELLNAKDDYGMTILHLAVAD 176
           N+ D   + A +  G T   +A  D
Sbjct: 254 NLCD---MEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 40  HEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP 99
               A++ L               +ALH+A+ KGY  ++K L+Q   D       DG  P
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-DGWTP 235

Query: 100 LHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELL 159
           LH AA  G  +    L     D   A    G+T   +  +    + L +L E      LL
Sbjct: 236 LHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE----DILGYLEELQKKQNLL 290

Query: 160 N 160
           +
Sbjct: 291 H 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.9 bits (115), Expect = 4e-07
 Identities = 45/248 (18%), Positives = 73/248 (29%), Gaps = 63/248 (25%)

Query: 20  ERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVK 79
           ++  V          A   G  +    +L +   I    +    +ALH A     V +VK
Sbjct: 32  KKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVK 90

Query: 80  AL--------------------------------LQVIPDKCSDTDVDGRNPLHLAAMRG 107
            L                                L          + +G  PL +A    
Sbjct: 91  FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA 150

Query: 108 HIDVLEELA--------------------------RAKPDAASARLIWGETILHLCVKHN 141
             ++L+                              +           G T LH+     
Sbjct: 151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG 210

Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
             E LK L++   D   +N KD  G T LH A    + EA ++L  +   ++ AV   G 
Sbjct: 211 YTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQ 266

Query: 202 TAWDILAQ 209
           TA+D+  +
Sbjct: 267 TAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 7/187 (3%)

Query: 33  HVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT 92
            +   +G E   +  + ++ +   + D    +    A   G    V  LL+   D     
Sbjct: 13  QLKRWIGSETDLEPPVVKRKKTKVKFDD--GAVFLAACSSGDTEEVLRLLERGADINY-A 69

Query: 93  DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
           +VDG   LH A +  ++D+++ L     +    +      I            +   L +
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYLDIAEYLIS 127

Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
            G      A +  G T L +A  +   E ++       +++ A            A+   
Sbjct: 128 QGAHV--GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL 185

Query: 213 DTKDWDI 219
           ++   + 
Sbjct: 186 NSGHIND 192

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 4e-10
 Identities = 39/236 (16%), Positives = 65/236 (27%), Gaps = 47/236 (19%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ------ 83
            PLH A +       +E+L  KP +  + D      LH +       I   LL       
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 84  -------------------------------VIPDKCSDTDVDGRNPLHLAAMRGHIDVL 112
                                           +    +     G   LHLA  +   +V 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 113 EELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHL 172
           + L          +  + +  LH       L+ ++           +N +D  G T L  
Sbjct: 122 QFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIEL--LCGLGKSAVNWQDKQGWTPLFH 178

Query: 173 AVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
           A+A+   +A  LL      E + V   G  A D+            + +       
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-------QVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 3/98 (3%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
           +  ++ PLH AA +G     + +           D +  + L  A  +G+      L++ 
Sbjct: 135 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 194

Query: 85  IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
              +    D  G     +A    +  V +       DA
Sbjct: 195 YGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 3/110 (2%)

Query: 47  ILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR 106
            L +        D      LH A+  G + +++ L  +     +  D  G  PL  A   
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDS 156
           GH D    L              G     + +     +  KF L N+ D+
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVVDA 229

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (136), Expect = 7e-10
 Identities = 43/253 (16%), Positives = 69/253 (27%), Gaps = 56/253 (22%)

Query: 29  ETPLHVAALLGHEDFAKEILRQK--PRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
           +T LH+A +  HE F   +L         +  +    +ALH+A+  G    V+ L     
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 87  DKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD------------AASARLIWGETIL 134
                         HLA           L + +P             +            
Sbjct: 70  GVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 135 HLCVKHNQLEALKFLLENMGDSELLNAKDDYGM--------------------------- 167
            +  + N     +   E+      L A++  G                            
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQ--LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 168 -------TILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIG 220
                  T LHLAV  +    ++LL  + A +  A    G T                + 
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMYGGRTPLGSALLRPNP----ILA 241

Query: 221 ELLRRAGAISAQD 233
            LLR  GA   +D
Sbjct: 242 RLLRAHGAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 3e-09
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
           G+T LHL V H     L FLL      E L+ ++D G T LHLA 
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 5/115 (4%)

Query: 93  DVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLL 150
             DG   LHLA +  H   L+ L    A  +    +   G+T LHL     +   ++ L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 151 ENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD 205
                       +  G T LHLA   +      +L           +    T   
Sbjct: 66  AAGAGV---LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 158 LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA--IEVNAVTANGFTAWDILAQSKRDTK 215
           +     + G T LHLAV  +    +  L   +A    ++     G TA  + A     + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 216 DWDIGE 221
              +  
Sbjct: 61  VEKLYA 66

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 25  NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKS---SALHIASQKGYVGIVKAL 81
           +C  +T    AA+    +   E   +      +L++      + LH+A       +V+ L
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 82  LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN 141
                D        GR PLHLA       VLE L +A  D  +AR+  G T L   +   
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRP 236

Query: 142 QLEALKFLLEN 152
                + L  +
Sbjct: 237 NPILARLLRAH 247

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 1e-09
 Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 44/198 (22%)

Query: 29  ETPLHVAALLGHEDFAKEILRQ---KPRIAEELDSRKSSALHIASQKGYVGIV------- 78
           ++ LH+A +   +    E++RQ           ++ + + LH+A       I        
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 79  -------------------------------KALLQVIPDKCSDTDVDGRNPLHLAAMRG 107
                                                +      T+ +G   LHLA++ G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGM 167
           ++ ++E L     D  +     G T LHL V     + +  LL+   D    N     G 
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV---NRVTYQGY 179

Query: 168 TILHLAVADKQIEAIKLL 185
           +   L          + L
Sbjct: 180 SPYQLTWGRPSTRIQQQL 197

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 31  PLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90
            LH+A++ G+    + ++     +  +      +ALH+A       +V  LL+   D  +
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VN 172

Query: 91  DTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
                G +P  L   R    + ++L +   +
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 130 GETILHLCVKHNQLEALKFLLENM-GDSELLNAKDDYGMTILHLA 173
           G++ LHL + H +      ++  + GD   LN +++   T LHLA
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 65  ALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAAS 124
            LH+AS  GY+GIV+ L+ +  D  +    +GR  LHLA    + D++  L +   D  +
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-N 172

Query: 125 ARLIWGETILHLCVKHNQLEALKFLLENMGD--SELLNAKDD 164
                G +   L          + L +   +    L  ++D+
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 214

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
            T LH+A  L + D    +L+    +   +  +  S   +   +    I + L Q+  + 
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 4/118 (3%)

Query: 66  LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASA 125
           LH+A        V+ LL+   D  +     GR+PL  A     + +++ L +   +  + 
Sbjct: 114 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 173

Query: 126 RLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
               G + LH       L  ++ L+ +  D    + K+ +  T L +A + + I+ ++
Sbjct: 174 M-YSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 36  ALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD 95
           A+  +     ++L Q            SSALH AS +G + +V+ L++   D  S  +  
Sbjct: 151 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCH 209

Query: 96  GRNPLHLAAMRGHIDVL 112
              PL +A  R  ID+L
Sbjct: 210 NDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 43/223 (19%)

Query: 29  ETPLHVAALLGHEDFAKEILRQKPRIAEEL---DSRKSSALHIASQ-------------- 71
           +TPLH+A + G+      ++    +   EL   ++ + + LH+A                
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 72  ----------------------KGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI 109
                                    +  +              + DG   LH+A      
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 110 DVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTI 169
           + ++ L     D  +  +  G + L   V++N L  ++ LL++  +    NA+   G + 
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV---NAQMYSGSSA 180

Query: 170 LHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
           LH A     +  ++ L  S A + +    +  T   +    + 
Sbjct: 181 LHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 9e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 130 GETILHLCVKHNQLEALKFLLENMGDSEL-LNAKDDYGMTILHLA 173
           G+T LH+ V    L A+  L+         L+  ++   T LHLA
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 95  DGRNPLHLAAMRGHIDVLEELARAKPDAA---SARLIWGETILHLCVKHNQ 142
           DG  PLH+A ++G++  +  L                  +T LHL V    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 8e-08
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 36/195 (18%)

Query: 23  TVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIV---- 78
           T++   ET LH+AA     D AK +L        + ++ ++      +            
Sbjct: 18  TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLR 77

Query: 79  -------------------------KALLQVIPDKCSD---TDVDGRNPLHLAAMRGHID 110
                                    + +++ +    +D    D  G+  LH AA   + +
Sbjct: 78  NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTE 137

Query: 111 VLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTIL 170
            +  L     +   A+    ET L L  +    EA K LL+N  +       D       
Sbjct: 138 AVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFAN---REITDHMDRLPR 193

Query: 171 HLAVADKQIEAIKLL 185
            +A      + ++LL
Sbjct: 194 DVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 77  IVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHL 136
           ++  LL    +  +  D  G   LHLAA     D  + L  A  D   A          L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD---ANSQDNTGRTPL 60

Query: 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAV 196
                      F +     +  LNA+   G T L LA        ++ L T+ A ++NA 
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA-DINAA 119

Query: 197 TANGFTAW 204
             +G TA 
Sbjct: 120 DNSGKTAL 127

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 45  KEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA 104
            ++L Q   +   +D    ++LH+A++       K  L       +  D  GR PLH A 
Sbjct: 6   SDLLAQGAELNATMDKTGETSLHLAARFARADAAK-RLLDAGADANSQDNTGRTPLHAAV 64

Query: 105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDD 164
               + V + L R +    +AR+  G T L L  +      ++ L+    D   +NA D+
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD---INAADN 121

Query: 165 YGMTILH 171
            G T LH
Sbjct: 122 SGKTALH 128

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 15/144 (10%)

Query: 63  SSALHIASQKGYVGIVKALLQVI--------PDKCSDTDVDGRNPLHLAAM---RGHIDV 111
           ++ LH   +      +  LLQ              ++        LHLA     R  + +
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 112 LEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILH 171
           ++ L +   +           + + C+  N     + L   +     +   ++ G T L 
Sbjct: 64  VDFLVQNSGNLDKQTGKGSTALHYCCLTDNA----ECLKLLLRGKASIEIANESGETPLD 119

Query: 172 LAVADKQIEAIKLLTTSTAIEVNA 195
           +A   K     +LLT + +   N+
Sbjct: 120 IAKRLKHEHCEELLTQALSGRFNS 143

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 7/156 (4%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             L  AA  G +D  + ++           +       +     Y       + +     
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPF----TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
            D            A       + E+        +A+ +   T LH   +HN  E ++ L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           ++   D   ++ +  +  T   +++ +   +  ++L
Sbjct: 120 IKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 7/156 (4%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             L  AA  G     + +L ++    + L+    +AL +         ++    +     
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE---LLKQGAS 60

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
            +            A R       ++        +     G   +HL V+         +
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH----TAV 116

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           +  +     L+ +D  G+T L LA+     + + +L
Sbjct: 117 VSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 2/122 (1%)

Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAA 123
           + L  +S +G   +V+ ++            D        A+      + +         
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
           +A    G T LH     N ++  KFL+E+      +   D          + +   +  +
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 184 LL 185
            L
Sbjct: 121 FL 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 5/123 (4%)

Query: 63  SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA 122
           +  L  A+ +G V  V+ALL+   +  +      R    +      +             
Sbjct: 4   ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAE-----LLLLHG 58

Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
           A        T+        +   L  L+        L+ +D +G   + LA      +  
Sbjct: 59  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 183 KLL 185
           + L
Sbjct: 119 RYL 121

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 64  SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAA 123
           + L  A+ +G +  + +LLQ      ++ +V+ +N     A++       E+AR      
Sbjct: 3   NELASAAARGDLEQLTSLLQ------NNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 56

Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
           +   +   T   +     +   L  L   +     +N +D+ G   LHLA  +  +  ++
Sbjct: 57  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 116

Query: 184 LLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG 227
            L   TA  V      G TA D+     R+    ++  L++  G
Sbjct: 117 FLVKHTASNVGHRNHKGDTACDLARLYGRN----EVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 6/156 (3%)

Query: 30  TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
             L  AA  G  +    +L+    +    +++                  A   ++    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNV----NAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 90  SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
            D        +   A R       +         +     G   LHL  K   L  ++FL
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
           +++   +  +  ++  G T   LA    + E + L+
Sbjct: 119 VKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLM 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.79

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-35  Score=270.51  Aligned_cols=201  Identities=25%  Similarity=0.252  Sum_probs=180.0

Q ss_pred             cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCc--hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCH
Q 041009           22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPR--IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP   99 (434)
Q Consensus        22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp   99 (434)
                      +.+|.+|+||||+||..|+.+++++|++++++  ..+..|..|.||||+|+..|+.+++++|++.|+++ +..|.+|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchh
Confidence            45788999999999999999999999998754  45778899999999999999999999999999987 8899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCcc----------------------------------------------cccccCCCChH
Q 041009          100 LHLAAMRGHIDVLEELARAKPDA----------------------------------------------ASARLIWGETI  133 (434)
Q Consensus       100 L~~Aa~~g~~~~v~~Ll~~~~~~----------------------------------------------~~~~~~~g~t~  133 (434)
                      ||+|+..|+.++++.|++.....                                              ...+|.+|+||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            99999999999999997643210                                              13456779999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCC
Q 041009          134 LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRD  213 (434)
Q Consensus       134 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~  213 (434)
                      ||+|+++++.+++++|++.+.+.  .+.++..|.||||+|+..++.+++++|+++|+ +++.+|++|+||||+|+.    
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~ga-din~~d~~g~t~L~~A~~----  234 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADL--NKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMYGGRTPLGSALL----  234 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHT----
T ss_pred             ccccccccccccccchhcccccc--cccccccccccccccccccHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHH----
Confidence            99999999999999999999883  34567889999999999999999999999987 999999999999999998    


Q ss_pred             CchhHHHHHHHHcCCCc
Q 041009          214 TKDWDIGELLRRAGAIS  230 (434)
Q Consensus       214 ~~~~~i~~~L~~~g~~~  230 (434)
                      .+..+++++|+++||+.
T Consensus       235 ~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         235 RPNPILARLLRAHGAPE  251 (255)
T ss_dssp             SSCHHHHHHHHHTTCCC
T ss_pred             CCCHHHHHHHHHcCCCC
Confidence            67799999999999974

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-35  Score=262.61  Aligned_cols=210  Identities=25%  Similarity=0.284  Sum_probs=194.2

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      +||++.++.+++.++..+  +..|..|+||||+||..|+.++++++++.+... ...+..+.++++.|+..|+.+++++|
T Consensus        13 ~G~~~~v~~~l~~~~~~~--~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~L   89 (223)
T d1uoha_          13 SGKLEELKESILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKAL   89 (223)
T ss_dssp             TTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             hCCHHHHHHHHHhCCCcC--cCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccccchhHHH
Confidence            699999999999887654  557999999999999999999999999998887 56678899999999999999999999


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA  161 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  161 (434)
                      ++++.+. +..|.+|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+.+++.+++++|.+.+.+   ++.
T Consensus        90 l~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~---i~~  164 (223)
T d1uoha_          90 LGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNI  164 (223)
T ss_dssp             HHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCC
T ss_pred             hccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccce---eee
Confidence            9999887 889999999999999999999999999999887 67788999999999999999999999999998   899


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHH
Q 041009          162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR  225 (434)
Q Consensus       162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~  225 (434)
                      +|.+|+||||+|+..|+.+++++|++.|+ |++.+|.+|+||+|+|.     .++.+++++|++
T Consensus       165 ~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga-d~~~~d~~g~tpl~~A~-----~~~~~i~~~Ll~  222 (223)
T d1uoha_         165 QDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIENKEEKTPLQVAK-----GGLGLILKRMVE  222 (223)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHCC-----TTHHHHHHHHHC
T ss_pred             ccCCCCceeccccccCcHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-----CCCHHHHhcccC
Confidence            99999999999999999999999999988 99999999999999873     466778888764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.8e-31  Score=239.58  Aligned_cols=216  Identities=19%  Similarity=0.201  Sum_probs=191.4

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCch--hhccCCCCCcHHHHHHHcCCHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRI--AEELDSRKSSALHIASQKGYVGIVK   79 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~   79 (434)
                      +|+.+.++.|++.++..+  +.+|.+|+||||+|+..|+.+++++|+++++++  .+..|..|.+|+|+|+..+..++++
T Consensus        10 ~g~~~~v~~Ll~~~~~~~--~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (229)
T d1ixva_          10 ENEFFKVQELLHSKPSLL--LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK   87 (229)
T ss_dssp             HTCHHHHHHHHHHCGGGT--TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcc--cccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccc
Confidence            589999999999876543  567899999999999999999999999998765  3566889999999999999999999


Q ss_pred             HHHhhCCCC-CccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCcc
Q 041009           80 ALLQVIPDK-CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL  158 (434)
Q Consensus        80 ~Ll~~~~~~-~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  158 (434)
                      .++..+... ....+..+.+|++.++..++.++++.|++.+.+. ...|.+|+||||.|+.+|+.+++++|++.+...  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--  164 (229)
T d1ixva_          88 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--  164 (229)
T ss_dssp             HHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC--
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccccccccccccc--
Confidence            999887643 2456778999999999999999999999988877 667888999999999999999999999987542  


Q ss_pred             ccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009          159 LNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI  229 (434)
Q Consensus       159 ~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~  229 (434)
                      ++.+|.+|+||||+|+..|+.+++++|++..+.|++.+|++|+||||+|++       .+++++|++.|++
T Consensus       165 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~-------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN-------EQVKKFFLNNVVD  228 (229)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC-------HHHHHHHHHHCCC
T ss_pred             ccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh-------HHHHHHHHHcCCC
Confidence            899999999999999999999999999976444999999999999999865       4789999999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.7e-31  Score=243.75  Aligned_cols=185  Identities=25%  Similarity=0.230  Sum_probs=167.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .|+.++++.|++.+.+....+..|..|+||||+||..|+.++++.|+++|+++ +..|..|.||||+|+..|+.++++.|
T Consensus        19 ~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~L   97 (255)
T d1oy3d_          19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVL   97 (255)
T ss_dssp             TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHH
Confidence            68999999999987654445667889999999999999999999999999987 78899999999999999999999999


Q ss_pred             HhhCCCC----------------------------------------------CccCCCCCCCHHHHHHHhCCHHHHHHH
Q 041009           82 LQVIPDK----------------------------------------------CSDTDVDGRNPLHLAAMRGHIDVLEEL  115 (434)
Q Consensus        82 l~~~~~~----------------------------------------------~~~~d~~g~tpL~~Aa~~g~~~~v~~L  115 (434)
                      ++.....                                              .+.+|.+|.||||+|+..|+.+++++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~L  177 (255)
T d1oy3d_          98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL  177 (255)
T ss_dssp             SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccch
Confidence            7653221                                              023578899999999999999999999


Q ss_pred             HHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          116 ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       116 l~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      ++.+++.....+..|.||||+|++.|+.+++++|+++|++   ++.+|.+|+||||+|+..++.+++++|+++|+
T Consensus       178 l~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad---in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             hcccccccccccccccccccccccccHHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            9999998877788999999999999999999999999999   89999999999999999999999999999998

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=233.93  Aligned_cols=197  Identities=28%  Similarity=0.299  Sum_probs=183.8

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  107 (434)
                      +++.||.+|..|+.+.++.++...+..++.+|..|+||||+||..|+.+++++|++.+... ...+..+.++++.++..|
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-cccccccccccccccccc
Confidence            5789999999999999999999998888999999999999999999999999999998877 567788999999999999


Q ss_pred             CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009          108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT  187 (434)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~  187 (434)
                      +.+++++|+++++++ +..|.+|.||||+|+.+|+.+++++|+++|.+   ++.+|.+|.||||+|+..++.+++++|.+
T Consensus        82 ~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d---~~~~~~~~~t~L~~a~~~~~~~~~~~L~~  157 (223)
T d1uoha_          82 RDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYEATAMHRAAAKGNLKMIHILLY  157 (223)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCccchhhhhcCCcchhhhhcc
Confidence            999999999999887 67799999999999999999999999999998   78999999999999999999999999998


Q ss_pred             cccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccccC
Q 041009          188 STAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDL  234 (434)
Q Consensus       188 ~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~~  234 (434)
                      .+. +++.+|.+|.||||+|+.    .+..+++++|++.|++.....
T Consensus       158 ~~~-~i~~~d~~g~TpL~~Aa~----~g~~~~v~~LL~~Gad~~~~d  199 (223)
T d1uoha_         158 YKA-STNIQDTEGNTPLHLACD----EERVEEAKLLVSQGASIYIEN  199 (223)
T ss_dssp             TTC-CSCCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCSCCCC
T ss_pred             ccc-eeeeccCCCCceeccccc----cCcHHHHHHHHHCCCCCCCCC
Confidence            877 999999999999999999    667899999999999865433

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.5e-31  Score=245.32  Aligned_cols=210  Identities=20%  Similarity=0.264  Sum_probs=173.7

Q ss_pred             CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHH--------hcCCchhhccCCCCCcHHHHHHHcCC
Q 041009            3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEIL--------RQKPRIAEELDSRKSSALHIASQKGY   74 (434)
Q Consensus         3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~d~~g~tpLh~Aa~~g~   74 (434)
                      |+.++++.|.+.+.+..+    +.+|+||||+||..|+.++|+.|+        +.|+++ +.+|.+|+||||+|+..|+
T Consensus        12 ~~~~~~~~l~~~~~n~~~----~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~   86 (277)
T d2fo1e1          12 GSYAITEPITRESVNIID----PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARR   86 (277)
T ss_dssp             SSSCCCSCCSTTTTTTCC----CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHhcCCCcCC----CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeecccccccc
Confidence            344444555555543321    246999999999999999988775        456766 7889999999999999999


Q ss_pred             HHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCc---------------------------------
Q 041009           75 VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD---------------------------------  121 (434)
Q Consensus        75 ~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~---------------------------------  121 (434)
                      .+++++|+++|+++ +.+|.+|.||++.|...|+.++.+.+......                                 
T Consensus        87 ~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (277)
T d2fo1e1          87 RRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL  165 (277)
T ss_dssp             HHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred             cccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccc
Confidence            99999999999987 78999999999999999999888877652100                                 


Q ss_pred             -------------ccccccCCCChHHHHHHHcCCHHHHHHHHHh-cCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009          122 -------------AASARLIWGETILHLCVKHNQLEALKFLLEN-MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT  187 (434)
Q Consensus       122 -------------~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~  187 (434)
                                   .....+..|.|+||.++..++.+++++++.. +.+   .+.+|..|+||||+|+..|+.+++++|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~---~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~  242 (277)
T d2fo1e1         166 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQ  242 (277)
T ss_dssp             HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ccccccccccccccccccccCCCCcccccccccccccccccccccccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                         0123345689999999999999999987654 444   78899999999999999999999999999


Q ss_pred             cccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHc
Q 041009          188 STAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA  226 (434)
Q Consensus       188 ~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~  226 (434)
                      +|+ |++.+|.+|+||||+|+.    .+..+++++|.+.
T Consensus       243 ~ga-din~~d~~G~T~L~~A~~----~~~~~iv~lL~~c  276 (277)
T d2fo1e1         243 QGA-SVEAVDATDHTARQLAQA----NNHHNIVDIFDRC  276 (277)
T ss_dssp             TTC-CSSCCCSSSCCHHHHHHH----TTCHHHHHHHHTT
T ss_pred             CcC-CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHh
Confidence            987 999999999999999999    7778999998753

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.3e-30  Score=242.54  Aligned_cols=199  Identities=25%  Similarity=0.308  Sum_probs=167.4

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .||++.|+.||+.+.+   .+..|.+|.||||+|+..|+.+++++|++++.+. ...+..+.+||++|+..|+.++++.|
T Consensus        50 ~G~~~~v~~Ll~~Gad---vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l  125 (291)
T d1s70b_          50 SGDTEEVLRLLERGAD---INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYL  125 (291)
T ss_dssp             HTCHHHHHHHHHHCCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC---CCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccccchhhcc
Confidence            4888888888888855   3667888888999988888888888888888776 66678888888888888888888888


Q ss_pred             HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCc--------------------------ccccccCCCChHHH
Q 041009           82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD--------------------------AASARLIWGETILH  135 (434)
Q Consensus        82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~--------------------------~~~~~~~~g~t~Lh  135 (434)
                      ++.+... +..|.++.+|+++|+..++.+.++.++.....                          .....+..|.||||
T Consensus       126 ~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  204 (291)
T d1s70b_         126 ISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH  204 (291)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH
T ss_pred             cccCccc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhh
Confidence            8888766 67788888888888888888888777753211                          12344567899999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          136 LCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       136 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      .|+..|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|+++|+ |++.+|++|+||||+|++
T Consensus       205 ~a~~~~~~~~~~~Ll~~g~d---in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga-dv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         205 VAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCTTTSCCS
T ss_pred             HHHHcCChhhhcccccceec---ccccccCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHH
Confidence            99999999999999999988   88899999999999999999999999999988 999999999999999854

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.5e-31  Score=234.31  Aligned_cols=194  Identities=25%  Similarity=0.297  Sum_probs=167.0

Q ss_pred             CCCCHHHHHHhcCCHHHHH----HHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHH
Q 041009           27 LSETPLHVAALLGHEDFAK----EILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHL  102 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~----~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~  102 (434)
                      +|+||||+|+..|+.++++    .+...+.++ +.+|.+|+||||+|+..|+.+++++|++.+++. +.+|..|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccccccc-ccccccccccccc
Confidence            5999999999999975544    555566665 888999999999999999999999999999987 7899999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCcc-----cccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCC-CCCCCcHHHHHHHc
Q 041009          103 AAMRGHIDVLEELARAKPDA-----ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK-DDYGMTILHLAVAD  176 (434)
Q Consensus       103 Aa~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-d~~g~t~LhlA~~~  176 (434)
                      |+..|+.++++.|++.+...     .......|.||||.|+..++.++++++++.+..   ++.+ +.+|+||||+|++.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~---~~~~~~~~G~T~L~~A~~~  155 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVDL  155 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHT
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcc---cccccccCCCCcccccccc
Confidence            99999999999999875442     233445689999999999999999999999888   5554 46799999999999


Q ss_pred             CcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009          177 KQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS  230 (434)
Q Consensus       177 ~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~  230 (434)
                      |+.+++++|+++|+ |++.+|.+|+||+|+|+.    .+..++++.|.+.+.+.
T Consensus       156 g~~~~v~~Ll~~ga-d~~~~~~~G~tpl~~A~~----~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         156 QNPDLVSLLLKCGA-DVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             TCHHHHHHHHTTTC-CSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGG
T ss_pred             ccHHHHHHHHhcCC-cccccCCCCCCHHHHHHH----CCCHHHHHHHHHcCCcc
Confidence            99999999999988 999999999999999988    66789999998876653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.5e-29  Score=221.62  Aligned_cols=197  Identities=25%  Similarity=0.260  Sum_probs=178.2

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCC--CccCCCCCCCHHHHHHHh
Q 041009           29 ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK--CSDTDVDGRNPLHLAAMR  106 (434)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpL~~Aa~~  106 (434)
                      +||||+||..|+.+.++.|++.++...+.+|.+|+||||+|+..|+.+++++|+++++++  .+..|..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            489999999999999999999988888999999999999999999999999999998775  245778899999999999


Q ss_pred             CCHHHHHHHHHhCCcc-cccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009          107 GHIDVLEELARAKPDA-ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL  185 (434)
Q Consensus       107 g~~~~v~~Ll~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L  185 (434)
                      +..++++.++..+... ....+..+.|+++.++..++.+++++|++.+..   .+.+|.+|+||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc---ccccCCCCCCccchhhhcccccccccc
Confidence            9999999998877654 344567799999999999999999999999988   788999999999999999999999999


Q ss_pred             hhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHH-cCCCccc
Q 041009          186 TTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR-AGAISAQ  232 (434)
Q Consensus       186 l~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~-~g~~~~~  232 (434)
                      ++.+..+++.+|.+|.||||+|+.    .+..+++++|++ .|++...
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~----~~~~~~v~~Ll~~~gad~~~  201 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDL  201 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCC
T ss_pred             cccccccccccccccCCchhhhcc----cccHHHHHHHHHhcCCCCCC
Confidence            999877999999999999999999    677899999985 5887543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=240.09  Aligned_cols=115  Identities=28%  Similarity=0.409  Sum_probs=95.3

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL   81 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L   81 (434)
                      .||+++|+.|++.+.+   .+..|..|+||||+||..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|
T Consensus        10 ~g~~~~v~~Ll~~g~~---in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g~~~~~~~L   85 (408)
T d1n11a_          10 MGHLPIVKNLLQRGAS---PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLL   85 (408)
T ss_dssp             HTCHHHHHHHHHTTCC---SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CcCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            5999999999999865   3667899999999999999999999999999987 88899999999999988887776665


Q ss_pred             Hh------------------------------------------------------------------hCCCCCccCCCC
Q 041009           82 LQ------------------------------------------------------------------VIPDKCSDTDVD   95 (434)
Q Consensus        82 l~------------------------------------------------------------------~~~~~~~~~d~~   95 (434)
                      +.                                                                  .+.+. +..+.+
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~~  164 (408)
T d1n11a_          86 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKN  164 (408)
T ss_dssp             HHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSS
T ss_pred             HHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCc
Confidence            54                                                                  33333 445667


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCc
Q 041009           96 GRNPLHLAAMRGHIDVLEELARAKPD  121 (434)
Q Consensus        96 g~tpL~~Aa~~g~~~~v~~Ll~~~~~  121 (434)
                      |.+|||.|+..|+.+++++|+.++++
T Consensus       165 ~~~~L~~A~~~~~~~~~~~Ll~~g~~  190 (408)
T d1n11a_         165 GLTPLHVAVHHNNLDIVKLLLPRGGS  190 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCc
Confidence            78888888888888888888876654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.2e-28  Score=217.70  Aligned_cols=206  Identities=28%  Similarity=0.299  Sum_probs=187.1

Q ss_pred             hHHHHHHHhcCCCcccccc-cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 041009            5 VNTLLELRQQDPLIVERPT-VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ   83 (434)
Q Consensus         5 ~~~v~~Ll~~~~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~   83 (434)
                      -|+|+.|++.++++   +. .|.+|.||||+||..|+.+++++|++.++++ +.+|..+.++++.++..++.........
T Consensus         2 ~~~v~~Ll~~g~di---n~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1ot8a_           2 AQVISDLLAQGAEL---NATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLR   77 (209)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCc---CcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-cccccccccccccccccccccccccccc
Confidence            48999999999764   33 4788999999999999999999999999987 7889999999999999999988888777


Q ss_pred             hCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC
Q 041009           84 VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD  163 (434)
Q Consensus        84 ~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d  163 (434)
                      .........+..|.++.+.+.........+.|...+.+. ...+..|+|+|+.++.++..++++.+++.+.+   ++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~---~~~~d  153 (209)
T d1ot8a_          78 NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN---RDAQD  153 (209)
T ss_dssp             CTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCC
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc---ccccc
Confidence            766665667778999999999999999999999988876 66788899999999999999999999999988   88999


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHH
Q 041009          164 DYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELL  223 (434)
Q Consensus       164 ~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L  223 (434)
                      .+|+||||+|+..|+.+++++|+++|+ |++.+|.+|+||+|+|++    .++.+++++|
T Consensus       154 ~~g~TpL~~A~~~g~~~~v~~Ll~~ga-d~n~~d~~g~Tpl~~A~~----~~~~~iv~lL  208 (209)
T d1ot8a_         154 DKDETPLFLAAREGSYEASKALLDNFA-NREITDHMDRLPRDVASE----RLHHDIVRLL  208 (209)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             cccccccchhccccHHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHH----cCCHHHHhhc
Confidence            999999999999999999999999988 999999999999999999    6778898876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-27  Score=219.66  Aligned_cols=222  Identities=25%  Similarity=0.237  Sum_probs=179.6

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCch---------------------------
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRI---------------------------   54 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~---------------------------   54 (434)
                      +||+|+++.|++.+.++.  ...+..|.||||+|+..|+.++++.|++.+...                           
T Consensus        15 ~~~~e~vk~Ll~~G~din--~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (285)
T d1wdya_          15 NEDVDLVQQLLEGGANVN--FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL   92 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCcC--ccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhh
Confidence            699999999999997742  123457999999999999999999999876543                           


Q ss_pred             -----hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCC---------ccCCCCCCCHHHHHHHhCCHHHHHHHHHhCC
Q 041009           55 -----AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC---------SDTDVDGRNPLHLAAMRGHIDVLEELARAKP  120 (434)
Q Consensus        55 -----~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  120 (434)
                           ....+..|.|+++.|+..|+...++.++....+..         ...+..|.||||+|+++|+.+++++|+++..
T Consensus        93 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  172 (285)
T d1wdya_          93 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  172 (285)
T ss_dssp             HTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSC
T ss_pred             hhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccC
Confidence                 12235567788888888888888888777654431         1245568899999999999999999997644


Q ss_pred             cccccccCCCChHHHHHHHcC----CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccccccc
Q 041009          121 DAASARLIWGETILHLCVKHN----QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAV  196 (434)
Q Consensus       121 ~~~~~~~~~g~t~Lh~A~~~g----~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~  196 (434)
                      ...+..+..|.++.+.+...+    ..+++++|+++|++   ++.+|..|.||||.|+..|+.+++++|++..+.+++.+
T Consensus       173 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~---~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~  249 (285)
T d1wdya_         173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT  249 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC
T ss_pred             CCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC---CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCC
Confidence            334666777887777655433    35688999999988   88999999999999999999999999998766699999


Q ss_pred             ccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          197 TANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       197 n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      |.+|.||||+|+.    .++.+++++|+++||++..
T Consensus       250 d~~G~TpL~~A~~----~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         250 DSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSCC
T ss_pred             CCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCc
Confidence            9999999999999    7789999999999998643

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-28  Score=217.33  Aligned_cols=177  Identities=20%  Similarity=0.272  Sum_probs=144.3

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHh----cCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHH
Q 041009           27 LSETPLHVAALLGHEDFAKEILR----QKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHL  102 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~  102 (434)
                      +|+||||+||..|+.++++.|++    .+.++ +..|..|+||||+|+..|+.+++++|++.+++. +..+..|.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccccccc-ccccccccccccc
Confidence            48888888888888888888775    45554 777888888888888888888888888887776 6677777777777


Q ss_pred             HHHhCCHHHHHHHHHh-------------------------------------CCcccccccCCCChHHHHHHHcCCHHH
Q 041009          103 AAMRGHIDVLEELARA-------------------------------------KPDAASARLIWGETILHLCVKHNQLEA  145 (434)
Q Consensus       103 Aa~~g~~~~v~~Ll~~-------------------------------------~~~~~~~~~~~g~t~Lh~A~~~g~~~~  145 (434)
                      |...++.++++.+...                                     ..+.....+..+.++++.|+..+..++
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            7777776666655543                                     233333445568899999999999999


Q ss_pred             HHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       146 v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      ++.+++.+..   .+.+|.+|+||||+|+..|+.+++++|+++|+ |++.+|.+|.||||+|++
T Consensus       160 ~~~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga-d~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         160 VQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             HHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCTTTTCSS
T ss_pred             hhhhhhhccc---cccccccCcchHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHh
Confidence            9999999887   78899999999999999999999999999987 999999999999999876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-27  Score=230.98  Aligned_cols=212  Identities=27%  Similarity=0.336  Sum_probs=181.8

Q ss_pred             CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchh--------------------------
Q 041009            2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIA--------------------------   55 (434)
Q Consensus         2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~--------------------------   55 (434)
                      .|+.++++.|++.+.+.   +..+.+|.+|||.|+..|+.++++.|+++++++.                          
T Consensus       142 ~~~~~~v~~ll~~~~~~---~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~  218 (408)
T d1n11a_         142 YGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL  218 (408)
T ss_dssp             TTCHHHHHHHHHTTCCT---TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC---CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhh
Confidence            57889999999887553   5567788999999999999999999998876541                          


Q ss_pred             ------hccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCC
Q 041009           56 ------EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIW  129 (434)
Q Consensus        56 ------~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  129 (434)
                            ...+..|.||||+|+..++.++++.+++.+... +..|..|.||++.|+..++.+++++|++++.+. ...+..
T Consensus       219 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~  296 (408)
T d1n11a_         219 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRM  296 (408)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSS
T ss_pred             hccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-cccccc
Confidence                  223456677788888888888888888877766 677888999999999999999999999998887 556777


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009          130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ  209 (434)
Q Consensus       130 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~  209 (434)
                      +.||||.++..++.++++++++.|++   +|.+|.+|+||||+|++.|+.+++++|+++|+ |++.+|++|+||+|+|+.
T Consensus       297 ~~t~L~~~~~~~~~~~~~~ll~~g~~---in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA-d~n~~d~~G~t~L~~A~~  372 (408)
T d1n11a_         297 GYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-SPNEVSSDGTTPLAIAKR  372 (408)
T ss_dssp             CCCHHHHHHHSSCSHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCCSSSCCHHHHHHH
T ss_pred             ccccchhhcccCcceeeeeecccccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHH
Confidence            89999999999999999999999998   89999999999999999999999999999998 999999999999999999


Q ss_pred             ccCCCchhHHHHHHHHc
Q 041009          210 SKRDTKDWDIGELLRRA  226 (434)
Q Consensus       210 ~~~~~~~~~i~~~L~~~  226 (434)
                          .++.+++++|...
T Consensus       373 ----~~~~~iv~~L~~~  385 (408)
T d1n11a_         373 ----LGYISVTDVLKVV  385 (408)
T ss_dssp             ----TTCHHHHHHHHHH
T ss_pred             ----cCCHHHHHHHHHH
Confidence                6667888877543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=5.1e-27  Score=218.06  Aligned_cols=198  Identities=23%  Similarity=0.193  Sum_probs=177.3

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009           27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR  106 (434)
Q Consensus        27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  106 (434)
                      ++.|||+.||..|+.++|+.|+++|+++ +..|.+|.||||+|+..|+.+++++|++++.+. ...+..+.+||+.|+..
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccc
Confidence            3569999999999999999999999986 888999999999999999999999999999887 67888999999999999


Q ss_pred             CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCC------------------------ccccCC
Q 041009          107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDS------------------------ELLNAK  162 (434)
Q Consensus       107 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------------------------~~~~~~  162 (434)
                      |+.++++.|++++... ...|..+.+++++|+..+..+.++.++......                        ......
T Consensus       117 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         117 GYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             cccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            9999999999998776 667888999999999999999888887643221                        113456


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          163 DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       163 d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      +..|.||||+|+..|+.++++.|++.|. +++.++.+|.||||+|+.    .+..+++++|+++|++...
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~-din~~~~~g~TpL~~A~~----~g~~~iv~lLl~~Gadv~~  260 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEA  260 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCChhhHHHHcCChhhhccccccee-cccccccCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            7889999999999999999999999988 999999999999999999    7778999999999998643

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=201.23  Aligned_cols=154  Identities=23%  Similarity=0.280  Sum_probs=141.7

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH
Q 041009           30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (434)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  109 (434)
                      +|||+||..|+.++|+.|+++|+++ +.+|.+|.||||+|+ .|+.+++++|++++++. +..+..|.+|++.++..|+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            8999999999999999999999987 888999999999885 78999999999999987 78899999999999999999


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcc
Q 041009          110 DVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST  189 (434)
Q Consensus       110 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~  189 (434)
                      +.++.|++.+.+. +..+..|.+++|+|+..++.+++++|+++++..  .+.+|.+|+||||+|+..++.+++++|+++|
T Consensus        80 ~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccccccccccc--ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999988876 667888999999999999999999999998732  7889999999999999999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.8e-27  Score=196.31  Aligned_cols=152  Identities=25%  Similarity=0.320  Sum_probs=138.7

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH
Q 041009           30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (434)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  109 (434)
                      +.||.||..|+.++|+.|++.++..++..|..|+||||+|+ .|+.+++++|++.+.+. +..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            46999999999999999999866666899999999999886 58899999999999887 78889999999999999999


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhc
Q 041009          110 DVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS  188 (434)
Q Consensus       110 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~  188 (434)
                      ++++.+++++++. +.+|.+|+||||+|++.|+.+++++|+ .|++   ++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~---~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD---LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC---TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccc-ccccCCCCeeecccccccccccccccc-cccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999887 567889999999999999999999887 5677   789999999999999999999999999875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-27  Score=209.78  Aligned_cols=166  Identities=26%  Similarity=0.321  Sum_probs=151.7

Q ss_pred             ccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCC-----CccCCCC
Q 041009           21 RPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK-----CSDTDVD   95 (434)
Q Consensus        21 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~-----~~~~d~~   95 (434)
                      .+..|.+|+||||+||..|+.+++++|++.++++ +..|..|.||||+|+..|+.++++.|++.+...     ......+
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  110 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             cccCCCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            4667899999999999999999999999999987 788999999999999999999999999875442     2345567


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHH
Q 041009           96 GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA  175 (434)
Q Consensus        96 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~  175 (434)
                      |.||+|.|+..|+.+.+++|+..++......+.+|.||||.|++.|+.+++++|+++|++   ++.+|.+|+||||+|+.
T Consensus       111 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad---~~~~~~~G~tpl~~A~~  187 (221)
T d1iknd_         111 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQLTWG  187 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGGCTT
T ss_pred             cchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc---ccccCCCCCCHHHHHHH
Confidence            899999999999999999999999988777778899999999999999999999999999   89999999999999999


Q ss_pred             cCcHHHHHHhhhccc
Q 041009          176 DKQIEAIKLLTTSTA  190 (434)
Q Consensus       176 ~~~~~iv~~Ll~~~~  190 (434)
                      .++.+++++|.+...
T Consensus       188 ~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         188 RPSTRIQQQLGQLTL  202 (221)
T ss_dssp             SSCHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHHcCC
Confidence            999999999988754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.2e-26  Score=191.12  Aligned_cols=150  Identities=24%  Similarity=0.372  Sum_probs=130.0

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCC
Q 041009           29 ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH  108 (434)
Q Consensus        29 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~  108 (434)
                      .||||.||+.|+.++|+.|++++++. + .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            48999999999999999999998875 3 5888999999999999999999888887766 5667778889999999999


Q ss_pred             HHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009          109 IDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL  185 (434)
Q Consensus       109 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L  185 (434)
                      .+.++.+..++.+. ..+|.+|+||||+|+..|+.+++++|++.|++   ++.+|.+|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad---~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccC---CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999998888876 56788899999999999999999999999888   788899999999999999999998876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=2.4e-26  Score=211.61  Aligned_cols=180  Identities=19%  Similarity=0.274  Sum_probs=154.2

Q ss_pred             CCChHHHHHHH--------hcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC
Q 041009            2 AGSVNTLLELR--------QQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG   73 (434)
Q Consensus         2 ~G~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g   73 (434)
                      .|+.++++.|+        +.+.+   .+.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.|||++|+..|
T Consensus        43 ~g~~~~v~~Ll~~~~~~~l~~Gad---vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~  118 (277)
T d2fo1e1          43 NSSAEKSEDLIVHEAKECIAAGAD---VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANR  118 (277)
T ss_dssp             TTCCSCCTTHHHHHHHHHHHTCCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTT
T ss_pred             cCCHHHHHHHHhcchhHHHHcCCC---ccccCCCCCeeecccccccccccccccccccccc-ccccccccccccchhhhc
Confidence            56777776664        44533   4678999999999999999999999999999986 788999999999999999


Q ss_pred             CHHHHHHHHhhCC---C-------------------------------------------CCccCCCCCCCHHHHHHHhC
Q 041009           74 YVGIVKALLQVIP---D-------------------------------------------KCSDTDVDGRNPLHLAAMRG  107 (434)
Q Consensus        74 ~~~iv~~Ll~~~~---~-------------------------------------------~~~~~d~~g~tpL~~Aa~~g  107 (434)
                      +.++++.+.....   .                                           ..+..+..|.||||.++..+
T Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~  198 (277)
T d2fo1e1         119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS  198 (277)
T ss_dssp             CHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC
T ss_pred             chhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccc
Confidence            9988887754210   0                                           00124567899999999999


Q ss_pred             CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009          108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT  187 (434)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~  187 (434)
                      +.++++.++.........+|..|+||||+|++.|+.+++++|++.|++   ++.+|.+|+||||+|+++|+.+++++|.+
T Consensus       199 ~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad---in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         199 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999888777766688899999999999999999999999999999   89999999999999999999999999986


Q ss_pred             c
Q 041009          188 S  188 (434)
Q Consensus       188 ~  188 (434)
                      .
T Consensus       276 c  276 (277)
T d2fo1e1         276 C  276 (277)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-26  Score=191.25  Aligned_cols=154  Identities=23%  Similarity=0.298  Sum_probs=145.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCH
Q 041009           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQL  143 (434)
Q Consensus        64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  143 (434)
                      +|||+||..|+.++++.|+++|+++ +.+|.+|.||||+|+ .|+.++++.|++++++. ...+..|.++++.++.+++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            8999999999999999999999997 889999999999886 79999999999999987 67788899999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHH
Q 041009          144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELL  223 (434)
Q Consensus       144 ~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L  223 (434)
                      +.++.+++.+.+   ++..|..|.+|+|+|+..++.+++++|+++++.+.+.+|++|+||+|+|+.    .+..+++++|
T Consensus        80 ~~~~~l~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~----~~~~~iv~~L  152 (156)
T d1ihba_          80 DTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL----YGRNEVVSLM  152 (156)
T ss_dssp             HHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             cccccccccccc---ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHH----cCCHHHHHHH
Confidence            999999999988   888999999999999999999999999999988999999999999999999    7778999999


Q ss_pred             HHcC
Q 041009          224 RRAG  227 (434)
Q Consensus       224 ~~~g  227 (434)
                      +++|
T Consensus       153 l~~G  156 (156)
T d1ihba_         153 QANG  156 (156)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            9886

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.5e-25  Score=183.78  Aligned_cols=151  Identities=32%  Similarity=0.363  Sum_probs=139.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC
Q 041009           62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN  141 (434)
Q Consensus        62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  141 (434)
                      ..||||.||+.|+.+++++|++++++. + .|..|.||||+|+..++.++++.++...... ...+..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            359999999999999999999999876 3 7999999999999999999999999977766 455677889999999999


Q ss_pred             CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHH
Q 041009          142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGE  221 (434)
Q Consensus       142 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~  221 (434)
                      +.+.++++.+.+.+   .+.+|.+|+||||+|+..|+.+++++|++.|+ |++.+|.+|.||+|+|+.    .++.++++
T Consensus        79 ~~~~~~~l~~~~~~---~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga-d~~~~d~~g~Tpl~~A~~----~g~~eiv~  150 (153)
T d1awcb_          79 HANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDISID----NGNEDLAE  150 (153)
T ss_dssp             CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHH
T ss_pred             cceeeecccccCCc---cccccccCchHHHhhhhcchhheeeecccccc-CCcccCCCCCCHHHHHHH----cCCHHHHH
Confidence            99999999999998   78899999999999999999999999999988 999999999999999999    77788988


Q ss_pred             HH
Q 041009          222 LL  223 (434)
Q Consensus       222 ~L  223 (434)
                      +|
T Consensus       151 lL  152 (153)
T d1awcb_         151 IL  152 (153)
T ss_dssp             HH
T ss_pred             hC
Confidence            76

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3e-26  Score=214.41  Aligned_cols=183  Identities=19%  Similarity=0.116  Sum_probs=125.5

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCH---HHHHHHHhhCCCCCccCCCCCCCHH
Q 041009           24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYV---GIVKALLQVIPDKCSDTDVDGRNPL  100 (434)
Q Consensus        24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~---~iv~~Ll~~~~~~~~~~d~~g~tpL  100 (434)
                      .|..|+||||+||..|+.++|+.|+++|+++ +.+|..|+||||.||..++.   +.++.+++...+.....|..|+|||
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~l  181 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  181 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHH
Confidence            3888999999999999999999999999987 78899999999999987752   1222333322222356788999999


Q ss_pred             HHHHHhCC----HH--------HHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCc
Q 041009          101 HLAAMRGH----ID--------VLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMT  168 (434)
Q Consensus       101 ~~Aa~~g~----~~--------~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t  168 (434)
                      |.++..+.    ..        ++..+...+..........+.++++.+........+..+.........+|.+|.+|+|
T Consensus       182 h~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~T  261 (301)
T d1sw6a_         182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT  261 (301)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCC
T ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCC
Confidence            99887654    22        3445556555554555556677777666555444333221110001127899999999


Q ss_pred             HHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHH
Q 041009          169 ILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILA  208 (434)
Q Consensus       169 ~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~  208 (434)
                      |||+|++.|+.+++++|+++|+ |++.+|++|.||+|+|+
T Consensus       262 pLh~A~~~g~~~iv~~Ll~~GA-d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         262 CLNIAARLGNISIVDALLDYGA-DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTC-CTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHcC
Confidence            9999999999999999999988 99999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.8e-25  Score=184.19  Aligned_cols=152  Identities=22%  Similarity=0.302  Sum_probs=138.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCH
Q 041009           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQL  143 (434)
Q Consensus        64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  143 (434)
                      +.||.||..|+.++++.|++.+....+..|..|+||||+|+ .|+.++++.|++++.++ +..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            46999999999999999999865555889999999999987 58999999999999887 66678899999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHH
Q 041009          144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELL  223 (434)
Q Consensus       144 ~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L  223 (434)
                      ++++++++.+++   ++.+|.+|+||||+|+..|+.+++++|+ .++ +++.+|.+|+||+|+|+.    .+..+++++|
T Consensus        82 ~~~~~~l~~~~~---~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~-~~~~~d~~G~TpL~~A~~----~g~~~iv~~L  152 (156)
T d1bd8a_          82 DTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLA-AES-DLHRRDARGLTPLELALQ----RGAQDLVDIL  152 (156)
T ss_dssp             HHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTS-CTTCCCTTSCCHHHHHHH----SCCHHHHHHH
T ss_pred             cccccccccccc---cccccCCCCeeecccccccccccccccc-ccc-cccccCCCCCCHHHHHHH----cCCHHHHHHH
Confidence            999999999998   8899999999999999999999999887 455 899999999999999999    7778999999


Q ss_pred             HHc
Q 041009          224 RRA  226 (434)
Q Consensus       224 ~~~  226 (434)
                      +++
T Consensus       153 l~h  155 (156)
T d1bd8a_         153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=2.8e-27  Score=225.67  Aligned_cols=197  Identities=16%  Similarity=0.196  Sum_probs=155.0

Q ss_pred             ccCCCCCCHHHHHHhcCCHHHHHH---HHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCC--CCCC
Q 041009           23 TVNCLSETPLHVAALLGHEDFAKE---ILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD--VDGR   97 (434)
Q Consensus        23 ~~~~~g~t~Lh~Aa~~g~~~~v~~---Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--~~g~   97 (434)
                      ..+..|.||||+||..||.++++.   |++.++++ +..|.+|+||||+||..|+.++|++|++.|++. +..+  .+|.
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~  162 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENY  162 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCC
Confidence            356679999999999999887766   67888876 788999999999999999999999999999887 4444  4699


Q ss_pred             CHHHHHHHhCCHHHHHHHHHhCCccc--ccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCcc-----------------
Q 041009           98 NPLHLAAMRGHIDVLEELARAKPDAA--SARLIWGETILHLCVKHNQLEALKFLLENMGDSEL-----------------  158 (434)
Q Consensus        98 tpL~~Aa~~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----------------  158 (434)
                      ||||+|+..||.+++++|++.+++..  ...+.++.|++|.|+++|+.+++++|++.|++...                 
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  242 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFI  242 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHH
Confidence            99999999999999999999987653  23345577888899999999999999987643110                 


Q ss_pred             -------------ccCCCCC----------------CCcHHHHHHHcCcHHHHHHhhhccccc----ccccccCCCCHHH
Q 041009          159 -------------LNAKDDY----------------GMTILHLAVADKQIEAIKLLTTSTAIE----VNAVTANGFTAWD  205 (434)
Q Consensus       159 -------------~~~~d~~----------------g~t~LhlA~~~~~~~iv~~Ll~~~~~~----~~~~n~~g~t~l~  205 (434)
                                   +.....+                +.++++.|+..++.+++++|++.+...    .+..+.+|+||||
T Consensus       243 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh  322 (346)
T d2ajaa1         243 ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR  322 (346)
T ss_dssp             HHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred             HHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH
Confidence                         0001111                236788888889999999999877633    3445568999999


Q ss_pred             HHHHccCCCchhHHHHHHHH
Q 041009          206 ILAQSKRDTKDWDIGELLRR  225 (434)
Q Consensus       206 la~~~~~~~~~~~i~~~L~~  225 (434)
                      +|++    .++.+++++|+.
T Consensus       323 lA~~----~Gn~e~v~lLL~  338 (346)
T d2ajaa1         323 LALR----LGNQGACALLLS  338 (346)
T ss_dssp             HHHH----HTCTTHHHHHTT
T ss_pred             HHHH----cCcHHHHHHHhC
Confidence            9999    677889999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.2e-23  Score=182.21  Aligned_cols=174  Identities=21%  Similarity=0.258  Sum_probs=147.2

Q ss_pred             CCChHHHHHHHh----cCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHH
Q 041009            2 AGSVNTLLELRQ----QDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGI   77 (434)
Q Consensus         2 ~G~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i   77 (434)
                      .|++++++.|++    .+.   +.+..|.+|.||||+|+..|+.++++.|++++++. +..+..|.++++.|...++.++
T Consensus        13 ~g~~~~v~~Ll~~~~~~g~---~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a~~~~~~~~   88 (228)
T d1k1aa_          13 QGNLPAVHRLVNLFQQGGR---ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTC   88 (228)
T ss_dssp             TTCHHHHHHHHHHHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHHHHHCCC---CCCccCCCCCccceehhcccccccccccccccccc-cccccccccccccccccccccc
Confidence            589999999885    443   34667889999999999999999999999998876 6677788888888888777776


Q ss_pred             HHHHHhh-------------------------------------CCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCC
Q 041009           78 VKALLQV-------------------------------------IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKP  120 (434)
Q Consensus        78 v~~Ll~~-------------------------------------~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  120 (434)
                      ++.+...                                     ..+.....+..|.+|++.|+..+..++++.+++++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~  168 (228)
T d1k1aa_          89 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA  168 (228)
T ss_dssp             HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcc
Confidence            6655443                                     222223345678999999999999999999999888


Q ss_pred             cccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHH
Q 041009          121 DAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK  183 (434)
Q Consensus       121 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~  183 (434)
                      .. ..+|.+|.||||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|+++|+.++++
T Consensus       169 ~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad---~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         169 NV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             cc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhCCCccccC
Confidence            76 66788999999999999999999999999999   8999999999999999999988874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=1.2e-22  Score=178.80  Aligned_cols=183  Identities=25%  Similarity=0.300  Sum_probs=167.3

Q ss_pred             HHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCC
Q 041009           41 EDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKP  120 (434)
Q Consensus        41 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  120 (434)
                      .|+|+.|+++|+++....|.+|.||||+||..|+.+++++|++.++++ +.++..+.++++.++..++.+..........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccc
Confidence            589999999999984457999999999999999999999999999987 7899999999999999999998888887777


Q ss_pred             cccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCC
Q 041009          121 DAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG  200 (434)
Q Consensus       121 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g  200 (434)
                      .........|.++.+.+.........+.|.+.+.+   ++.+|..|+||||.++..+..++++.+++.+. +++..|.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~-~~~~~d~~g  156 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADAD---INAADNSGKTALHWAAAVNNTEAVNILLMHHA-NRDAQDDKD  156 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhccc---ccccCCCCCCcchhhcccCcceeeeeeccccc-ccccccccc
Confidence            66666677899999999999999999999999888   88899999999999999999999999999987 999999999


Q ss_pred             CCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009          201 FTAWDILAQSKRDTKDWDIGELLRRAGAISAQ  232 (434)
Q Consensus       201 ~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~  232 (434)
                      .||||+|+.    .+..+++++|++.|++...
T Consensus       157 ~TpL~~A~~----~g~~~~v~~Ll~~gad~n~  184 (209)
T d1ot8a_         157 ETPLFLAAR----EGSYEASKALLDNFANREI  184 (209)
T ss_dssp             CCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             ccccchhcc----ccHHHHHHHHHHCCCCCCC
Confidence            999999999    6779999999999988543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-23  Score=169.23  Aligned_cols=118  Identities=21%  Similarity=0.245  Sum_probs=65.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCC-ChHHHHHHHcC
Q 041009           63 SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG-ETILHLCVKHN  141 (434)
Q Consensus        63 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~~g  141 (434)
                      .++||+|+..|+.+++++|+++|+++ +.+|.+|.||+|.|+ .|+.+++++|+++++++ +..+..+ .||||+|+++|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHT
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            34555555555555555555555544 445555555555443 45555555555555554 2223332 34666666666


Q ss_pred             CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009          142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT  186 (434)
Q Consensus       142 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll  186 (434)
                      +.+++++|++.|++   ++.+|.+|+||||+|+++|+.+++++|+
T Consensus        81 ~~~~v~~Ll~~ga~---~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          81 FLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             CHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccc---cccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            66666666666655   5566666666666666666666666655

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=3e-25  Score=211.49  Aligned_cols=185  Identities=19%  Similarity=0.152  Sum_probs=142.5

Q ss_pred             CCChHHHHH---HHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhcc--CCCCCcHHHHHHHcCCHH
Q 041009            2 AGSVNTLLE---LRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEEL--DSRKSSALHIASQKGYVG   76 (434)
Q Consensus         2 ~G~~~~v~~---Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~--d~~g~tpLh~Aa~~g~~~   76 (434)
                      +|+.++++.   |++.+.+   .+.+|.+|.||||+||..||.++|++|++.|++. +..  +.+|+||||+||..|+.+
T Consensus       100 ~g~~~~~~~~~~L~~~~~~---in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~  175 (346)
T d2ajaa1         100 TGCSSALDTLCLLLTSDEI---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLH  175 (346)
T ss_dssp             HCCHHHHHHHTTC--CCSS---CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHH
T ss_pred             hCCHHHHHHHHHHHhCCCc---ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHH
Confidence            477766655   6777754   3667888999999999999999999999999987 333  457999999999999999


Q ss_pred             HHHHHHhhCCCCC--ccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCccccc-----------------------------
Q 041009           77 IVKALLQVIPDKC--SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASA-----------------------------  125 (434)
Q Consensus        77 iv~~Ll~~~~~~~--~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~-----------------------------  125 (434)
                      ++++|++.+++..  +..+.+|.||+|.|+.+|+.+++++|++.+++....                             
T Consensus       176 iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (346)
T d2ajaa1         176 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA  255 (346)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHH
Confidence            9999999987642  234556788889999999999999999865432100                             


Q ss_pred             ---ccC----------------CCChHHHHHHHcCCHHHHHHHHHhcCCCcc--ccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009          126 ---RLI----------------WGETILHLCVKHNQLEALKFLLENMGDSEL--LNAKDDYGMTILHLAVADKQIEAIKL  184 (434)
Q Consensus       126 ---~~~----------------~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~d~~g~t~LhlA~~~~~~~iv~~  184 (434)
                         ...                .+.++++.++..|..+++++|++.+.....  .+..+.+|+||||+|++.|+.+++++
T Consensus       256 l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~l  335 (346)
T d2ajaa1         256 FKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL  335 (346)
T ss_dssp             TTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHH
T ss_pred             HHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHH
Confidence               000                123677888888999999999998765433  23445679999999999999999999


Q ss_pred             hhhccc
Q 041009          185 LTTSTA  190 (434)
Q Consensus       185 Ll~~~~  190 (434)
                      |++.+.
T Consensus       336 LL~~p~  341 (346)
T d2ajaa1         336 LLSIPS  341 (346)
T ss_dssp             HTTSHH
T ss_pred             HhCCCC
Confidence            997654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-21  Score=179.91  Aligned_cols=202  Identities=23%  Similarity=0.212  Sum_probs=157.2

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG  107 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  107 (434)
                      ++|+||.|++.|+.++|+.|+++|+++....+..|+||||+|+..|+.+++++|++.+... ...+..+.+|.+.|+..+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHhhcC
Confidence            5799999999999999999999999985455678999999999999999999999998877 667778888888888888


Q ss_pred             CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCc-------cccCCCCCCCcHHHHHHHcCcHH
Q 041009          108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSE-------LLNAKDDYGMTILHLAVADKQIE  180 (434)
Q Consensus       108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-------~~~~~d~~g~t~LhlA~~~~~~~  180 (434)
                      ..+.....+++..+. ...+..+.++++.|+.+++...++.+++...+..       .....+..|.||||+|+..|+.+
T Consensus        84 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          84 SVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             CHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             Cccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence            888888888876665 4456677788888888888777777776544421       12233456778888888888888


Q ss_pred             HHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcc
Q 041009          181 AIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISA  231 (434)
Q Consensus       181 iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~  231 (434)
                      ++++|+++.+.+++..|..|.++...+..........++++.|.+.|++..
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n  213 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN  213 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC
Confidence            888887765557777777777777776665555556667777777777653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-23  Score=167.73  Aligned_cols=120  Identities=22%  Similarity=0.260  Sum_probs=110.4

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCC-CHHHHHHHh
Q 041009           28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGR-NPLHLAAMR  106 (434)
Q Consensus        28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~-tpL~~Aa~~  106 (434)
                      +.++||.||..|+.++|+.|+++|.++ +.+|..|.||||+|+ .|+.+++++|+++++++ +.+|..+. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            579999999999999999999999887 888999999999775 79999999999999988 67777765 699999999


Q ss_pred             CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHH
Q 041009          107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE  151 (434)
Q Consensus       107 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  151 (434)
                      |+.+++++|++++.+. +.+|.+|+||||+|+++|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999887 6779999999999999999999999864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.8e-23  Score=167.02  Aligned_cols=105  Identities=29%  Similarity=0.279  Sum_probs=61.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCH
Q 041009           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQL  143 (434)
Q Consensus        64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  143 (434)
                      |||++|++.|+.+++++|+++|.++ +.+|.+|+||||+|+..|+.+++++|++++++. +.+|.+|+||||+|+.+|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCch
Confidence            5566666666666666666655554 455555666666666666655555555555554 34455556666666666666


Q ss_pred             HHHHHHHHhcCCCccccCCCCCCCcHHHHH
Q 041009          144 EALKFLLENMGDSELLNAKDDYGMTILHLA  173 (434)
Q Consensus       144 ~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA  173 (434)
                      +++++|+++|++   ++.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~~Gad---~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGAD---KTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCC---SSSSSSSTCCCCCTC
T ss_pred             hhhhhhhccccc---ceeeCCCCCCHHHHH
Confidence            666666666555   555566666666555

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.1e-22  Score=163.63  Aligned_cols=120  Identities=24%  Similarity=0.245  Sum_probs=64.5

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH
Q 041009           30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI  109 (434)
Q Consensus        30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  109 (434)
                      ++|+.||..|+.++|+.|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            3455555555555555555555554 455555555555555555555555555555554 45555555555555555555


Q ss_pred             HHHHHHHHhCCcccccccCCCChHHHHH--HHcCCHHHHHHHHH
Q 041009          110 DVLEELARAKPDAASARLIWGETILHLC--VKHNQLEALKFLLE  151 (434)
Q Consensus       110 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A--~~~g~~~~v~~Ll~  151 (434)
                      +++++|+++++++....+..++|+++++  +++|+.+++++|++
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            5555555555554322223344444433  34455555555554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.1e-22  Score=162.44  Aligned_cols=107  Identities=28%  Similarity=0.360  Sum_probs=101.8

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHc
Q 041009           97 RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVAD  176 (434)
Q Consensus        97 ~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~  176 (434)
                      .|||++|+++|+.++++.|++++.++ +.+|.+|+||||+|+.+|+.++++++++.|++   ++.+|.+|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d---in~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT---TTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce---eeecccccccchhhhhhc
Confidence            47999999999999999999999887 67788999999999999999999999999999   899999999999999999


Q ss_pred             CcHHHHHHhhhcccccccccccCCCCHHHHHH
Q 041009          177 KQIEAIKLLTTSTAIEVNAVTANGFTAWDILA  208 (434)
Q Consensus       177 ~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~  208 (434)
                      |+.+++++|+++|+ |++.+|++|.||+|+|.
T Consensus        79 ~~~~~v~~Ll~~Ga-d~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GHVSCVKLLLSKGA-DKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCHHHHHHHTTCC-CSSSSSSSTCCCCCTCS
T ss_pred             Cchhhhhhhhcccc-cceeeCCCCCCHHHHHh
Confidence            99999999999988 99999999999999873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.1e-22  Score=160.47  Aligned_cols=120  Identities=22%  Similarity=0.205  Sum_probs=97.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCH
Q 041009           64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQL  143 (434)
Q Consensus        64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  143 (434)
                      ++|+.||..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.+.+. +..|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            6788888888888888888888876 788888888888888888888888888888776 66778888888888888888


Q ss_pred             HHHHHHHHhcCCCccccCCCC-CCCcHHHHH--HHcCcHHHHHHhhhc
Q 041009          144 EALKFLLENMGDSELLNAKDD-YGMTILHLA--VADKQIEAIKLLTTS  188 (434)
Q Consensus       144 ~~v~~Ll~~~~~~~~~~~~d~-~g~t~LhlA--~~~~~~~iv~~Ll~~  188 (434)
                      +++++|+++|++   ++.++. .|+|+++++  +..|+.+++++|+..
T Consensus        81 ~~v~~Ll~~ga~---v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCC---cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            888888888888   665553 477776655  466778888888754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.4e-20  Score=155.51  Aligned_cols=123  Identities=19%  Similarity=0.170  Sum_probs=95.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCchhh-----ccCCCCCcHHHHHHHc---CCHHHHHHHHhhCCCCCccCCCCCCCHHHH
Q 041009           31 PLHVAALLGHEDFAKEILRQKPRIAE-----ELDSRKSSALHIASQK---GYVGIVKALLQVIPDKCSDTDVDGRNPLHL  102 (434)
Q Consensus        31 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~-----~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~  102 (434)
                      .|+.|++.++...+..++..+.++..     ..+..|+||||+|+..   |+.+++++|++.|+++ +.+|.+|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            45677888888888888887766421     2366788888888864   5678888888888876 7788888888888


Q ss_pred             HHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009          103 AAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD  155 (434)
Q Consensus       103 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  155 (434)
                      |+..|+.+++++|++++++. +.+|.+|+||||+|+++|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            88888888888888888777 56677888888888888888888888877654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=9.5e-20  Score=151.86  Aligned_cols=122  Identities=21%  Similarity=0.218  Sum_probs=103.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCCc-----cCCCCCCCHHHHHHHh---CCHHHHHHHHHhCCcccccccCCCChHHHH
Q 041009           65 ALHIASQKGYVGIVKALLQVIPDKCS-----DTDVDGRNPLHLAAMR---GHIDVLEELARAKPDAASARLIWGETILHL  136 (434)
Q Consensus        65 pLh~Aa~~g~~~iv~~Ll~~~~~~~~-----~~d~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  136 (434)
                      .|+.|++.++...+..++..+.+...     ..+..|.||||+|++.   |+.+++++|+++++++ +.+|.+|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            45577889999999988888776421     2366789999999975   6788999999998887 6778889999999


Q ss_pred             HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009          137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA  190 (434)
Q Consensus       137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~  190 (434)
                      |+++|+.+++++|+++|++   ++.+|.+|+||||+|++.|+.+++++|++.++
T Consensus        88 A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccCcc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999988   88899999999999999999999999988765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=6.4e-20  Score=170.85  Aligned_cols=169  Identities=17%  Similarity=0.112  Sum_probs=111.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH---HHHHHHHHhCCcccccccCCCChHH
Q 041009           58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI---DVLEELARAKPDAASARLIWGETIL  134 (434)
Q Consensus        58 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~---~~v~~Ll~~~~~~~~~~~~~g~t~L  134 (434)
                      .|..|+||||+||..|+.+++++|+++|+++ +.+|..|+||||.|+..++.   +.++.+++.........|..|+|||
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~l  181 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  181 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHH
Confidence            4899999999999999999999999999988 78999999999999987752   2223333332333466788899999


Q ss_pred             HHHHHcCC----HH--------HHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcc--cccccccccCC
Q 041009          135 HLCVKHNQ----LE--------ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST--AIEVNAVTANG  200 (434)
Q Consensus       135 h~A~~~g~----~~--------~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~--~~~~~~~n~~g  200 (434)
                      |.++..+.    ..        ++.++.+.+...  ....+..+.++++.+.........+.+....  ...+|.+|.+|
T Consensus       182 h~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G  259 (301)
T d1sw6a_         182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP--IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG  259 (301)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCC--EEEC----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcc--hhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCC
Confidence            98886543    22        334445554432  3445556677777766555444444332111  11478999999


Q ss_pred             CCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009          201 FTAWDILAQSKRDTKDWDIGELLRRAGAISAQD  233 (434)
Q Consensus       201 ~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~  233 (434)
                      +||||+|++    .+..+++++|++.|++....
T Consensus       260 ~TpLh~A~~----~g~~~iv~~Ll~~GAd~~~~  288 (301)
T d1sw6a_         260 DTCLNIAAR----LGNISIVDALLDYGADPFIA  288 (301)
T ss_dssp             CCHHHHHHH----HCCHHHHHHHHHTTCCTTCC
T ss_pred             CCHHHHHHH----cCCHHHHHHHHHCCCCCCCC
Confidence            999999999    67789999999999986543