Citrus Sinensis ID: 041017
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | 2.2.26 [Sep-21-2011] | |||||||
| Q5FV41 | 499 | Probable folate-biopterin | yes | no | 0.991 | 0.991 | 0.642 | 0.0 | |
| Q9SQN2 | 497 | Probable folate-biopterin | no | no | 0.989 | 0.993 | 0.576 | 1e-174 | |
| F4KIL8 | 492 | Probable folate-biopterin | no | no | 0.977 | 0.991 | 0.563 | 1e-164 | |
| Q9LEV7 | 503 | Probable folate-biopterin | no | no | 0.967 | 0.960 | 0.461 | 1e-119 | |
| Q9SKZ5 | 560 | Folate-biopterin transpor | no | no | 0.841 | 0.75 | 0.331 | 1e-46 | |
| Q55721 | 494 | Folate-biopterin transpor | N/A | no | 0.799 | 0.807 | 0.334 | 1e-42 | |
| Q8RWQ5 | 491 | Probable folate-biopterin | no | no | 0.845 | 0.859 | 0.258 | 5e-41 | |
| F4I5Q2 | 542 | Probable folate-biopterin | no | no | 0.763 | 0.702 | 0.260 | 1e-22 | |
| O22780 | 538 | Probable folate-biopterin | no | no | 0.789 | 0.732 | 0.252 | 7e-20 | |
| Q9XIQ7 | 442 | Probable folate-biopterin | no | no | 0.805 | 0.909 | 0.239 | 1e-12 |
| >sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana GN=At5g25050 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/503 (64%), Positives = 404/503 (80%), Gaps = 8/503 (1%)
Query: 1 MMVEEENLEAPKEA-VIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGIS 59
M+VEE++LE V++ ES + CG P+ W+KML++E+HWSFV GVV +YGI+
Sbjct: 1 MVVEEQSLENGGSVHVVKGESNFRNVVCG----PVRWLKMLSSELHWSFVFGVVSLYGIN 56
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QGLGG+L RV T+YYMKDVQKVQPSE+Q IT +PWI+KPLWG+LTDVLPIFG+ RRP
Sbjct: 57 QGLGGSLGRVATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRP 116
Query: 120 YFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLA 179
YFILAG LGV S+L +S+H LHL A+ +T SSA +AIADVTIDAC A NSI HPSLA
Sbjct: 117 YFILAGVLGVVSLLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLA 176
Query: 180 SDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDF 239
SDMQSLCSL S+IGAL+G+ +SGI VHL+G KGVFGL+T P L+ +VGI+ +EP VP F
Sbjct: 177 SDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPHVPGF 236
Query: 240 NYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299
+YKQVN KF DAGKAMW T+K VWRP LYMY+S + LNIHEGLFYW+TDSK GP F+
Sbjct: 237 SYKQVNQKFTDAGKAMWRTMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFA 296
Query: 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKF 359
QETVGF+LS+G +GSILAA LYQ LKD+PF+ + W QLL LSGMLDL+LV RLNLKF
Sbjct: 297 QETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKF 356
Query: 360 GIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWG 419
G+PD++ +V+DE +S+M+G+LKWMPLLVL+S+LCP GIEGTFFALLMSIDNAG+++SSW
Sbjct: 357 GLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWL 416
Query: 420 GGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAEL---ESKE 476
GG++LH+LKVTRT+F NLWLA+L+RN++R+ PLC +FLVP+GD +T LP E+ +S E
Sbjct: 417 GGIMLHVLKVTRTEFGNLWLAVLVRNVMRLLPLCFLFLVPKGDQNTFKLPDEIMGEDSDE 476
Query: 477 ETAEASEAENIELVALVNSIDAR 499
E E N+EL +LV+S+D R
Sbjct: 477 EKDEKEGTRNLELASLVHSVDRR 499
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SQN2|FBT3_ARATH Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana GN=At1g79710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 286/496 (57%), Positives = 382/496 (77%), Gaps = 2/496 (0%)
Query: 1 MMVEEENLEAPKEAVIEDESESKKGCCG-CLWTPIYWIKMLATEMHWSFVLGVVIVYGIS 59
M E E ++ + + K+G L P+ W++ML E+HWSF GV+IVYG+S
Sbjct: 1 MANRSEEAEYENDSRRNHQDKKKEGVLDLVLKRPLRWLRMLIEELHWSFFFGVIIVYGVS 60
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QGLG L++V TQYY KD QK+QPS+AQ+Y G+ +PWI+KPLWGLLTDV+P+ GYRRRP
Sbjct: 61 QGLGKGLSKVSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRP 120
Query: 120 YFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLA 179
YFILAG L + SM++L +H LHL A+S L A SAG+AIADVTIDACV Q SI HP+LA
Sbjct: 121 YFILAGFLAMISMMVLWLHTNLHLALALSCLVAGSAGVAIADVTIDACVTQCSISHPTLA 180
Query: 180 SDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDF 239
+DMQSLC LCS+IG+L+G+S+SG+ VHL+G KGV+GL+ + AGLL++VG++L E
Sbjct: 181 ADMQSLCGLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESPSRSL 240
Query: 240 NYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299
K VN KFLDAG A+W T ++ VWRPCL+M LS AVSL+IHEG+FYWYTDSK GPSFS
Sbjct: 241 GRKHVNDKFLDAGSAIWKTFQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFS 300
Query: 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKF 359
+E VG ++S G +GS++ +LYQN LK++PF++V+FWA LS LSG LDL+LVLR+NLK
Sbjct: 301 KEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRINLKL 360
Query: 360 GIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWG 419
G+PD+ +V+DE +S M+ ++KW+PLLVLSS+LCP+G+EGTFFALLMSI++ G L SSWG
Sbjct: 361 GLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWG 420
Query: 420 GGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKEETA 479
GG+LLH LKVTRTQF NLWL I+IR++LR+ P+ ++FL+P D +++ LPAE+ + +
Sbjct: 421 GGVLLHALKVTRTQFDNLWLVIVIRSLLRVIPIGLVFLIPNVDSNSTILPAEMLT-SRIS 479
Query: 480 EASEAENIELVALVNS 495
E + E IE+ AL++
Sbjct: 480 EGVDTEKIEMTALISD 495
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4KIL8|FBT5_ARATH Probable folate-biopterin transporter 5 OS=Arabidopsis thaliana GN=At5g25040 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 578 bits (1489), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/499 (56%), Positives = 374/499 (74%), Gaps = 11/499 (2%)
Query: 1 MMVEEENLEAPKEA-VIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGIS 59
M EE+N+E V+E ES + CG P+ W+KMLA+++HWS+V VV GI+
Sbjct: 1 MAREEQNIENRGSVHVVERESNLRSVVCG----PVRWLKMLASKLHWSYVFAVVSNCGIN 56
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRR 118
QG G +L V T YYMKDVQKVQPS+ Q + IT + WI+ KPL+G+LTDVLPIFG+ RR
Sbjct: 57 QGFGYSLGHVATDYYMKDVQKVQPSQYQALSAITRISWIIFKPLFGILTDVLPIFGFHRR 116
Query: 119 PYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSL 178
PYFILAG +GV S+L +S+ LHL A+ +T SSA +AIADVTIDAC NS HPSL
Sbjct: 117 PYFILAGVIGVVSLLFISLQSNLHLYLALFWMTISSAAMAIADVTIDACTTYNSNKHPSL 176
Query: 179 ASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPD 238
ASDMQSLCSL +IG L+G+ +SGI VHL+G KGVFGL+T L+ +VG+L +EP+V
Sbjct: 177 ASDMQSLCSLSYSIGELLGFFMSGILVHLVGSKGVFGLLTFTFALVSVVGVLFSEPRVHG 236
Query: 239 FNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSF 298
F++KQ F +A KAMW T+K VW+P LYM+++ A+ L+I EGLFYW+TDSK GP F
Sbjct: 237 FSFKQ---NFTNAMKAMWRTIKCSDVWQPSLYMFITRALGLDIKEGLFYWFTDSKDGPLF 293
Query: 299 SQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLK 358
+QETVGF+LS+G +GSIL +LY LKD+PF+ + W QLL LSGM DL+LVLRLNLK
Sbjct: 294 AQETVGFILSIGSIGSILGVLLYNLRLKDHPFRKLFLWTQLLFALSGMFDLILVLRLNLK 353
Query: 359 FGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSW 418
FG+PD++ +V+D +S+M+ +L WM + VL+++LCP GIEGTFFALLMSIDNAG+++SSW
Sbjct: 354 FGLPDYLFIVVDGIVSKMIIRLTWMVIFVLNTKLCPHGIEGTFFALLMSIDNAGLMTSSW 413
Query: 419 GGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKEET 478
GG +LH+LKVTRT+F NLWLA+L+RN++R+ P+C +FLVP+GD +T LPAE+ ++
Sbjct: 414 LGGKMLHVLKVTRTEFGNLWLAVLVRNVMRLLPICFLFLVPQGDQNTFKLPAEIMGEDSE 473
Query: 479 AEASEAENIELVALVNSID 497
E + N+EL +LV+ +D
Sbjct: 474 EEGT--RNLELASLVDYVD 490
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/492 (46%), Positives = 332/492 (67%), Gaps = 9/492 (1%)
Query: 9 EAPKEAVIEDESE-----SKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQGLG 63
+ P I D SE + L P W++ML++ ++ SFVLGVV+VYG++QG
Sbjct: 13 DKPLLKPISDHSEIKTKARRNAVVSVLIQPFQWLQMLSSRLNLSFVLGVVLVYGVNQGFS 72
Query: 64 GALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFIL 123
G++ +V T YY KDVQ+VQPS Q+Y G+ +PW+++P+WGL TDV PI GY+R+PYF++
Sbjct: 73 GSIFKVVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKPYFVV 132
Query: 124 AGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQ 183
+G LG+ S + + + KL A+S L SA +AIADV IDAC+A NSI SLA D+Q
Sbjct: 133 SGVLGLVSAIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIATNSINIRSLAPDIQ 192
Query: 184 SLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQ---VPDFN 240
SLC +CS+ GAL+GY+ SG+FVH +GP+G G++ ++++G + E + VP
Sbjct: 193 SLCMVCSSAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFIYEKRSSTVPTQK 252
Query: 241 YKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQ 300
K+ A K M T+K+P VW+P LYM++S A++++ HEG FYWYTD AGP+FSQ
Sbjct: 253 TKKDTDGLGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHFYWYTDPTAGPAFSQ 312
Query: 301 ETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFG 360
E VG + +VG + S+ ++Y LK Y F+++LF+AQLL SGMLDL+ + R NL G
Sbjct: 313 EFVGIIYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWNLTLG 372
Query: 361 IPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGG 420
IPD + ++ +E ++M+ +++W+P++VLS+RLCP GIEGTFFA LM ID+ G L+S WGG
Sbjct: 373 IPDSLFVITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLASKWGG 432
Query: 421 GLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKEETAE 480
G +LH VTR F NLWL ILIRNILR+ +C +FLVP D +P+++ K+++ E
Sbjct: 433 GFVLHAFGVTRHDFGNLWLVILIRNILRLVTVCFVFLVPDSDHLDDLVPSDVLPKKQS-E 491
Query: 481 ASEAENIELVAL 492
+ ++I+L+ L
Sbjct: 492 DDDDDDIKLLLL 503
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKZ5|FBT1_ARATH Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 146/441 (33%), Positives = 227/441 (51%), Gaps = 21/441 (4%)
Query: 37 IKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLP 96
IK E+ V V +VY + LG LAR+ +Y+KD + P+E V G++SLP
Sbjct: 116 IKFYGVELSPDNV-AVAMVYFVQGVLG--LARLAVSFYLKDDLHLDPAETAVITGLSSLP 172
Query: 97 WIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS--MHEKLHLVFAVSALTASS 154
W+VKPL+G ++D +P+FGYRRR Y +L+G LG FS L++ + K F + + S
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSV 232
Query: 155 AGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVF 214
A + ++ A+ S++ +QSLC SA G ++ SG V G + VF
Sbjct: 233 AFSDVVVDSMVVERARGE--SQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVF 290
Query: 215 GLMTIPAGLLILVGILLNEPQV--PDFNYKQ----VNLKFLDAGKA----MWTTLKFPLV 264
G+ + + V +L+NE +V P K+ ++ FL K +W +K P V
Sbjct: 291 GVTALLPLITSAVAVLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNV 350
Query: 265 WRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNS 324
+ P L+++L + + + +FY +T +K G F+ E +G V V + S+L LY
Sbjct: 351 FLPTLFIFL-WQATPHSDSAMFY-FTTNKLG--FTPEFLGRVKLVTSIASLLGVGLYNGF 406
Query: 325 LKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMP 384
LK P + + + GM ++LV N + GI D + D I ++ Q +MP
Sbjct: 407 LKTVPLRKIFLVTTIFGTGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMP 466
Query: 385 LLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIR 444
+LVL++RLCP G+E T FA LMSI N G + G L +TR F NL I++
Sbjct: 467 VLVLAARLCPEGMEATLFATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIILC 526
Query: 445 NILRITPLCVIFLVPRGDPDT 465
N+ + PL ++ L+PR PDT
Sbjct: 527 NLSSLLPLPLLGLLPRDSPDT 547
|
Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q55721|FBT_SYNY3 Folate-biopterin transporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0642 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 226/424 (53%), Gaps = 25/424 (5%)
Query: 49 VLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTD 108
+L ++ +Y + LG L+R+ +++KD + P+ G+ + PWI+KP+ GL++D
Sbjct: 36 LLAILSIYFVQGVLG--LSRLAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSD 93
Query: 109 VLPIFGYRRRPYFILAGCLGVFSMLL----LSMHEKLHLVFAVSALTASSAGIAIADVTI 164
+P+FGYRRR Y L+G +G LL +S + LV ++L+ +AI DV +
Sbjct: 94 TVPLFGYRRRSYLWLSGLMGSAGWLLFAAWVSSGTQAGLVLLFTSLS-----VAIGDVIV 148
Query: 165 DACVAQNSICHPSLAS--DMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAG 222
D+ V + + SLA +QSL +A+G +I SG + + VF + I
Sbjct: 149 DSLVVERA-QRESLAQVGSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPL 207
Query: 223 LLILVGILLNEPQVPDFNYK-QVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNI 281
L + L++E + K Q + K +W ++ + P L+++ F +
Sbjct: 208 LTVGAAFLISEVSTAEEEEKPQPKAQI----KLVWQAVRQKTILLPTLFIF--FWQATPS 261
Query: 282 HEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLS 341
E F+++T ++ G F + +G V V V ++ LYQ LK PF+ ++ W+ ++S
Sbjct: 262 AESAFFYFTTNELG--FEPKFLGRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVIS 319
Query: 342 GLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTF 401
L G+ L+L+ N GI D + D I + GQ+ +MP+LVL++RLCP GIE T
Sbjct: 320 SLLGLTTLILITHANRAMGIDDHWFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATL 379
Query: 402 FALLMSIDN-AGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPR 460
FALLMS+ N AGVLS G LL H L VT TQF NL L ++I N+ + PL + L+P
Sbjct: 380 FALLMSVMNLAGVLSFE-VGSLLTHWLGVTETQFDNLALLVIITNLSTLLPLPFLGLLPA 438
Query: 461 GDPD 464
GDP
Sbjct: 439 GDPQ 442
|
Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q8RWQ5|FBT4_ARATH Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 126/487 (25%), Positives = 225/487 (46%), Gaps = 65/487 (13%)
Query: 34 IYWIKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGIT 93
I+W+K L + +F+ V ++Y +QG + Y +KD ++ PS +Q +
Sbjct: 2 IHWLKQLRSAFGVAFLWLVCLIY-FTQGFR-SFVWTAVSYQLKDRLQLSPSASQFVFSVA 59
Query: 94 SLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE--KLHLVFAVSALT 151
PW +KPL+G+++D +PI G +R PY +++ L + L+L + + ++ + LT
Sbjct: 60 FFPWSIKPLYGIISDCIPIGGKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLT 119
Query: 152 ASSAGIAIADVTIDACVAQN-SICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210
+ G A+ADV IDA +A+ + S A D+QS+ A+G + G + G + +
Sbjct: 120 VQNLGSAMADVVIDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKI 179
Query: 211 KGVFGLMTIPAGLLILVGILLNE--------PQVPDFNYKQ-----VNLKFLDAGKA--- 254
+ +F L T+ L +L L+ E P++ D N + N + D K+
Sbjct: 180 ETIFLLFTVLPALQLLSCALVEESPANNEPLPELLDSNEFEEKSLTSNDNYPDTSKSNTR 239
Query: 255 -----------------------------MW------------TTLKFPLVWRPCLYMYL 273
W K P++ RP + ++
Sbjct: 240 RRKGQKKGKKGDSNGKSETQKKQSKSLASQWFQSLKAATFGLGRAFKQPIILRPMAWFFI 299
Query: 274 SFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDV 333
+ N+ +FY+ T+ +G VG +G + +Y L+D +
Sbjct: 300 AHITVPNLSTVMFYYQTEVL---QLDAAFLGTARVVGWLGLMFGTFIYNRYLQDMTLRKS 356
Query: 334 LFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLC 393
L +A + ++ +LD++LV R N+ +G+ D ++ + + QLK+MP L+LS RLC
Sbjct: 357 LLFAHIGLSVTILLDMVLVSRANVGYGVSDKTMVLFGSALGDAINQLKFMPFLILSGRLC 416
Query: 394 PSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLC 453
P GIEGT FAL MSI+N G S+ G L +L ++ F N+++ + I+ P+
Sbjct: 417 PPGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGISSGSFDNMFMGLAIQVFCTYIPVL 476
Query: 454 VIFLVPR 460
+FL+P+
Sbjct: 477 FLFLIPK 483
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4I5Q2|FBT8_ARATH Probable folate-biopterin transporter 8, chloroplastic OS=Arabidopsis thaliana GN=At1g04570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 196/403 (48%), Gaps = 22/403 (5%)
Query: 72 QYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFS 131
++M +QPS Q+ SLP + KPL+G+L+DVL I RR PY + L V +
Sbjct: 109 NFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLSDVLYIGSGRRVPYIAIGVFLQVLA 168
Query: 132 MLLLSMHEKLHLVFA--VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLC 189
+ + + V V+ + S+ G +I +V DA VA+ + + + +QS +
Sbjct: 169 WGSMGIFQGAREVLPSLVACVLLSNLGASITEVAKDALVAEYGLRY--RINGLQSYALMA 226
Query: 190 SAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNE-----PQVPDFNYKQV 244
SA G ++G + G + PK F + + L ++V + E P++ + +
Sbjct: 227 SAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEESFGLPRIAETS---- 282
Query: 245 NLKFLDAGKAMWTTLKFPL----VWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQ 300
L++ K + LK + + +P ++ +S A+ + +F + T +
Sbjct: 283 --SVLESVKKQISNLKEAIQADEISQPLIWAVVSIAMVPLLSGSVFCYQTQVL---NLDP 337
Query: 301 ETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFG 360
+G +G + + ++Y LK P + ++ QLL GLS +LD +LV ++NL FG
Sbjct: 338 SVIGMSKVIGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGLSILLDYILVKQINLGFG 397
Query: 361 IPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGG 420
I + V ++ ++ ++ Q K +P V + +CP G EG+ + L S + S++ G
Sbjct: 398 ISNEVYVLCFSSLAEILAQFKILPFAVRLASMCPQGCEGSVTSFLASTLCLSQIVSAFLG 457
Query: 421 GLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDP 463
L +++ +T + + NL ILI+++ + PLC + LVP +P
Sbjct: 458 VGLANLIGITSSNYSNLSSGILIQSLAALAPLCFMHLVPMSEP 500
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O22780|FBT9_ARATH Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 110/435 (25%), Positives = 193/435 (44%), Gaps = 41/435 (9%)
Query: 72 QYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFILA------- 124
++M ++PS Q+ SLP + KPL+G+L+DVL I G RR PY +
Sbjct: 106 NFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYGVLSDVLYIGGARRVPYISVGVLLQGLA 165
Query: 125 -GCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQ 183
G L +F E L + A L S+ G +I +V+ DA VA+ + + + +Q
Sbjct: 166 WGSLAIFP----GAREVLPSLMAFILL--SNLGASITEVSQDALVAEYGLRYQ--INGLQ 217
Query: 184 SLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQV------- 236
S + SA+G ++G + G + P+ +F T L ++V + E V
Sbjct: 218 SYALMASAVGGILGNLLGGYCLLKTPPRILFLAFTALLSLQLIVSLSSKEESVNLPRIGE 277
Query: 237 --PDFN--YKQVNLKFLD-AGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTD 291
P+ + V +FLD G + PL+W + S A+ + +F + T
Sbjct: 278 VTPEISSVLGIVKKQFLDLKGIVQVDEISQPLIW-----IVSSIALVPLLSGSVFCYQTQ 332
Query: 292 SKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLL 351
+ +G +G + + ++Y K P + ++ QLL S + D +L
Sbjct: 333 VL---NLDPSVIGMSKVIGQLMLLCLTVVYDRYWKKLPMRALIHIVQLLYAFSLLFDYIL 389
Query: 352 VLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA 411
V ++NL FGI + ++ ++ ++ Q K +P VL + +CP G EG+ + L S
Sbjct: 390 VKQINLAFGISNTAFVLCFSSVAEILAQFKILPFSVLLANMCPGGCEGSITSFLASTLCL 449
Query: 412 GVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAE 471
+ S + G + +++ +T + NL ILI+++ + PL I VP +P E
Sbjct: 450 SSVVSGFTGVGMANMIGITSKNYSNLPAGILIQSLAALVPLWFIHYVPMLEPGF-----E 504
Query: 472 LESKEETAEASEAEN 486
E K ++ S
Sbjct: 505 REGKRAMSKKSRRNR 519
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIQ7|FBT7_ARATH Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 183/430 (42%), Gaps = 28/430 (6%)
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QG G +G +++ + +V PS Q+ +LP + KP++G+++D + FG R P
Sbjct: 30 QGFRG-FPWLGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVSDSVYFFGQHRIP 88
Query: 120 YFILAGCLGVFSMLLLSMHEKLHL-VFAVSA-LTASSAGIAIADVTIDACVAQNSICHPS 177
Y + L S L ++ + ++ + A+S L S+ G ++ +V DA VA++ S
Sbjct: 89 YIAVGALLQAISWLAIAFLSRSNVSILALSIYLLLSNLGASLVEVANDAIVAESGKQKTS 148
Query: 178 --LASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGI-----L 230
+ ++ S + S++G ++G + GI + + F + I A L LV I
Sbjct: 149 ETQSGELPSFVWMVSSLGGILGNLLGGIAIKTFSAQSTFLVFGILALLQFLVTINIREKS 208
Query: 231 LNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYT 290
LN P+ P + D L+ P + ++ +S AV + +F++ T
Sbjct: 209 LNLPENPS-PAGGIRKHLSDLSH----VLRKPEISYSIAWIAVSTAVVPVLTGTMFFYQT 263
Query: 291 DSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLL 350
+G G + +L Y LK + +L Q+ + DLL
Sbjct: 264 KFL---KIDASLLGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFFVISDLL 320
Query: 351 LVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDN 410
V + G+ D V ++ G + K +P VL +RLCP G EG+ A +MS
Sbjct: 321 FVKGVYRDLGVSDSVYVLFFSGFLETLFYFKILPFTVLMARLCPPGCEGSLMAFVMSAIA 380
Query: 411 AGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPA 470
+ S + G +L + VT F + I PL + TS++
Sbjct: 381 LAFIVSGYLGIVLASFVGVTEDDFSGFTRGLAIEACCVGIPLIL----------TSWIYD 430
Query: 471 ELESKEETAE 480
E E+KE++ +
Sbjct: 431 EAETKEKSKK 440
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| 224143338 | 494 | predicted protein [Populus trichocarpa] | 0.989 | 1.0 | 0.730 | 0.0 | |
| 225430519 | 506 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.982 | 0.722 | 0.0 | |
| 224092621 | 494 | predicted protein [Populus trichocarpa] | 0.989 | 1.0 | 0.714 | 0.0 | |
| 255548708 | 498 | transporter, putative [Ricinus communis] | 0.997 | 1.0 | 0.726 | 0.0 | |
| 449441852 | 503 | PREDICTED: probable folate-biopterin tra | 0.989 | 0.982 | 0.694 | 0.0 | |
| 357437205 | 505 | hypothetical protein MTR_1g014250 [Medic | 0.997 | 0.986 | 0.718 | 0.0 | |
| 388494474 | 499 | unknown [Lotus japonicus] | 0.997 | 0.997 | 0.709 | 0.0 | |
| 225443247 | 496 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.987 | 0.653 | 0.0 | |
| 15238691 | 499 | major facilitator protein [Arabidopsis t | 0.991 | 0.991 | 0.642 | 0.0 | |
| 28973640 | 499 | putative membrane protein [Arabidopsis t | 0.991 | 0.991 | 0.642 | 0.0 |
| >gi|224143338|ref|XP_002324921.1| predicted protein [Populus trichocarpa] gi|222866355|gb|EEF03486.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/498 (73%), Positives = 426/498 (85%), Gaps = 4/498 (0%)
Query: 2 MVEEENLEAPKEAVIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQG 61
MVE ENLEA E V E E K G C WTPIYW KMLA E HWSFV GV++VYGI+QG
Sbjct: 1 MVEGENLEACSE-VGGGEDERKGGFFDCFWTPIYWFKMLANETHWSFVFGVLVVYGINQG 59
Query: 62 LGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYF 121
LGGA RVGT YYMKDVQKVQPSE+Q+Y GI S+PW+VKPLWGLLTDVLPI GYRRRPYF
Sbjct: 60 LGGAFNRVGTDYYMKDVQKVQPSESQIYQGIISIPWLVKPLWGLLTDVLPILGYRRRPYF 119
Query: 122 ILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASD 181
I AG LGV SMLLLS HE LH+ FA+ +LTA SAG AIADVTIDACVAQNS PSLA+D
Sbjct: 120 IFAGLLGVVSMLLLSFHENLHIAFALLSLTAGSAGAAIADVTIDACVAQNSNTRPSLAAD 179
Query: 182 MQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNY 241
MQSLC+L S+IGAL+G+S+SGIFVHLIGPKGVFGL++IPAGL+ LVGILL+EP +P+F+Y
Sbjct: 180 MQSLCALSSSIGALMGFSLSGIFVHLIGPKGVFGLLSIPAGLVFLVGILLDEPFMPNFSY 239
Query: 242 KQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301
+QVN KF+DAGKAMW TLKFP VWRPC+YMYLS A+S++IHEGLFYWYTDSK GPSFSQE
Sbjct: 240 RQVNQKFVDAGKAMWRTLKFPDVWRPCVYMYLSIALSIDIHEGLFYWYTDSKGGPSFSQE 299
Query: 302 TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGI 361
TVGF+ S+G +GS+L A+LYQN LKD+PF+++LFW QLL GLSGMLDL+LVLRLNLKF I
Sbjct: 300 TVGFIFSIGSIGSLLGALLYQNVLKDHPFRNLLFWIQLLFGLSGMLDLMLVLRLNLKFSI 359
Query: 362 PDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGG 421
PD+ +VIDE +S+M+G+LKWMPLLVLSS+LCP GIEGTFFALLMSIDN G+LSS WGGG
Sbjct: 360 PDYFFIVIDESVSQMIGRLKWMPLLVLSSKLCPPGIEGTFFALLMSIDNVGLLSSQWGGG 419
Query: 422 LLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKEETAEA 481
+LH+LKVTRT+F NLW+AIL RNILR+TPLC++FL+PRGDP+ S LP E+ +E A
Sbjct: 420 FILHLLKVTRTRFDNLWIAILTRNILRVTPLCLLFLIPRGDPNASILPTEILGAKEEA-- 477
Query: 482 SEAENIELVALVNSIDAR 499
E ENIELV+LV+S+D +
Sbjct: 478 -ENENIELVSLVSSVDGK 494
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430519|ref|XP_002283372.1| PREDICTED: uncharacterized protein LOC100261254 [Vitis vinifera] gi|296082152|emb|CBI21157.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/508 (72%), Positives = 433/508 (85%), Gaps = 11/508 (2%)
Query: 1 MMVEEENLEAPKEAVIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQ 60
M+VEEEN P E V +E+ES G C + PIYW KMLA E+HWSFV GVV VYGISQ
Sbjct: 1 MIVEEENPPTPSEVV--EENESNGGFCDFICAPIYWFKMLAMELHWSFVFGVVAVYGISQ 58
Query: 61 GLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPY 120
GLGGALARVGT+YYMKDVQKVQPSEAQ+Y GITS+PW+VKPLWGLLTDVLPI GY RRPY
Sbjct: 59 GLGGALARVGTEYYMKDVQKVQPSEAQIYGGITSIPWLVKPLWGLLTDVLPIVGYHRRPY 118
Query: 121 FILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLAS 180
FILAG LGV SML+LS H+ LHLV A+ +LTA SAG+AIADVTIDACVAQNS HPSLA+
Sbjct: 119 FILAGLLGVISMLVLSFHKDLHLVLALFSLTAGSAGVAIADVTIDACVAQNSNLHPSLAA 178
Query: 181 DMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFN 240
DMQSLC+L S++GAL+G+SISGIFVHLIGP GVFGL+TIPA L++LVGI+L+EP P+F
Sbjct: 179 DMQSLCALSSSVGALVGFSISGIFVHLIGPTGVFGLLTIPATLVLLVGIVLSEPHTPNFV 238
Query: 241 YKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQ 300
Y+QVN K LDA KAMWTTLK+P VWRPCLYMYLS A+SLNIHEGLFYWYTDSK GP FSQ
Sbjct: 239 YRQVNQKLLDACKAMWTTLKYPDVWRPCLYMYLSLALSLNIHEGLFYWYTDSKEGPLFSQ 298
Query: 301 ETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFG 360
ETVG++ S+G VGS+L AILYQ +LKD+PF+D+LFW QLL GLSGMLDL+LVLRLNLK+G
Sbjct: 299 ETVGYIFSIGSVGSLLGAILYQYTLKDHPFRDLLFWTQLLYGLSGMLDLILVLRLNLKYG 358
Query: 361 IPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGG 420
IPD+ +V+ EG+S+M+G+LKWMPLLVLSS+LCP GIEGTFFALLMSIDN G+LSSSWGG
Sbjct: 359 IPDYFFIVVAEGVSQMIGRLKWMPLLVLSSKLCPPGIEGTFFALLMSIDNLGILSSSWGG 418
Query: 421 GLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAE-LESKEETA 479
G LLHILKVTR QF NLW+AILIRNILR++PL ++FLVPR DP++S +P++ L++ ++ A
Sbjct: 419 GFLLHILKVTRVQFDNLWMAILIRNILRLSPLALLFLVPRTDPNSSIIPSQILQNTKQAA 478
Query: 480 EASEAE--------NIELVALVNSIDAR 499
AS E NIEL+ LVN++D+R
Sbjct: 479 HASHPENENKNEDGNIELLPLVNNVDSR 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224092621|ref|XP_002309684.1| predicted protein [Populus trichocarpa] gi|222855660|gb|EEE93207.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/498 (71%), Positives = 418/498 (83%), Gaps = 4/498 (0%)
Query: 2 MVEEENLEAPKEAVIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQG 61
MVE+E LEA E V+E+E E K W PIYW KMLA E HWSFV GV+ VYGI+QG
Sbjct: 1 MVEDEKLEACNE-VVEEEYEQKGRFFDFFWAPIYWFKMLANETHWSFVFGVLAVYGINQG 59
Query: 62 LGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYF 121
LGGAL RVGT YYMKDVQKVQPSE+Q+Y GI S+PW+VKPLWGL+TD LPIFGYRRRPY
Sbjct: 60 LGGALNRVGTDYYMKDVQKVQPSESQIYQGIISIPWLVKPLWGLVTDFLPIFGYRRRPYL 119
Query: 122 ILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASD 181
I AG LG FS LLLS HE LH+VFA+ ++TA S G AIADVTIDACV QNS PSLA+D
Sbjct: 120 IFAGLLGTFSTLLLSFHENLHIVFALLSMTAGSTGAAIADVTIDACVVQNSNIRPSLAAD 179
Query: 182 MQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNY 241
MQSLC+L S+IGAL+G+S+SGIFVHLIGPKGVFGL++IP GL+ LVGILL+EP +PDF+Y
Sbjct: 180 MQSLCALSSSIGALMGFSLSGIFVHLIGPKGVFGLLSIPYGLVFLVGILLDEPFMPDFSY 239
Query: 242 KQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301
+Q K LDA KAMW TLKFP VWRPC+YMYLS A+S+NIHEGLFYWYTDSK GPSFSQE
Sbjct: 240 RQ---KLLDASKAMWRTLKFPDVWRPCVYMYLSLALSINIHEGLFYWYTDSKDGPSFSQE 296
Query: 302 TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGI 361
VGF+ S+G +GS+L A+LYQN LKD+PF+++LFW QLL GLSGMLDL+LVLRLNLKFGI
Sbjct: 297 NVGFIFSIGSIGSLLGALLYQNVLKDHPFRNLLFWTQLLFGLSGMLDLMLVLRLNLKFGI 356
Query: 362 PDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGG 421
PD+ +VIDE +S+M+ +LKWMPLLVLSS+LCP GIEGTFFALLMSIDN GVLSS WGGG
Sbjct: 357 PDYFFIVIDESVSQMITRLKWMPLLVLSSKLCPPGIEGTFFALLMSIDNIGVLSSQWGGG 416
Query: 422 LLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKEETAEA 481
++LH+L VTRT+F NLWLAILIRNILRITPLC++FL+PRGDP+ S L ++ +E AE
Sbjct: 417 VILHLLNVTRTRFDNLWLAILIRNILRITPLCLLFLIPRGDPNASVLSNDILGAKEEAET 476
Query: 482 SEAENIELVALVNSIDAR 499
E ENIELV+LV+S+D +
Sbjct: 477 PENENIELVSLVSSVDGK 494
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548708|ref|XP_002515410.1| transporter, putative [Ricinus communis] gi|223545354|gb|EEF46859.1| transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/498 (72%), Positives = 426/498 (85%)
Query: 2 MVEEENLEAPKEAVIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQG 61
MVE+E LEA + V+E + G L TP YW KMLA E HWS V GV+ VYGISQG
Sbjct: 1 MVEDEKLEASGDEVMEKDESRGGGFVNFLCTPFYWFKMLANETHWSLVFGVLAVYGISQG 60
Query: 62 LGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYF 121
LGGA +RVGT YYMKDVQKVQPSE+Q+Y GI S+PW+VKP+WGLLTDVLP+ GYRRRPYF
Sbjct: 61 LGGAFSRVGTDYYMKDVQKVQPSESQIYQGIISIPWLVKPIWGLLTDVLPVSGYRRRPYF 120
Query: 122 ILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASD 181
I AG +GV SMLLLS+HE LHLVFA+ +LTA SAG+AIADVTIDACVAQNS HPSLA D
Sbjct: 121 IFAGLVGVVSMLLLSLHENLHLVFALLSLTAGSAGVAIADVTIDACVAQNSNTHPSLAPD 180
Query: 182 MQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNY 241
MQSLC+L S++GAL+GYSISGIF+H IG KGVFGL+TIPAGL++LVGI+L EP + +FNY
Sbjct: 181 MQSLCTLSSSVGALLGYSISGIFIHFIGSKGVFGLLTIPAGLVLLVGIMLEEPIMLNFNY 240
Query: 242 KQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301
+QVN KF+DAGKAMWTTLKFP VWR CLYMYLSFA+S+NIHEG+FYWYTD+ GPSFSQE
Sbjct: 241 RQVNQKFVDAGKAMWTTLKFPDVWRSCLYMYLSFALSVNIHEGMFYWYTDATGGPSFSQE 300
Query: 302 TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGI 361
VGF+ SVG VGS+LAAI+YQN LKDYPF+DVLFW+QLL GLSGMLDL++VLRLNL+ GI
Sbjct: 301 MVGFIFSVGSVGSLLAAIIYQNVLKDYPFRDVLFWSQLLLGLSGMLDLIVVLRLNLRIGI 360
Query: 362 PDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGG 421
PD+V +VIDE + RMV LKWMPLLVLSS+LCP GIEGTFFALLMSIDN G+LSSSWGGG
Sbjct: 361 PDYVLIVIDECVFRMVLNLKWMPLLVLSSKLCPPGIEGTFFALLMSIDNLGLLSSSWGGG 420
Query: 422 LLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKEETAEA 481
LLLH+L VTRT+F NLWLAI++R+ILR++PLC+IFLVPRGDP+ S LP+E+ ++ EA
Sbjct: 421 LLLHLLDVTRTKFDNLWLAIILRSILRMSPLCLIFLVPRGDPNASLLPSEILGTDDRNEA 480
Query: 482 SEAENIELVALVNSIDAR 499
E ENIELV+LV S+D++
Sbjct: 481 PEDENIELVSLVRSVDSK 498
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441852|ref|XP_004138696.1| PREDICTED: probable folate-biopterin transporter 2-like [Cucumis sativus] gi|449493306|ref|XP_004159250.1| PREDICTED: probable folate-biopterin transporter 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/497 (69%), Positives = 414/497 (83%), Gaps = 3/497 (0%)
Query: 2 MVEEENLEAPKEAVIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQG 61
MVEEE L+ E + EDE + + + T YW K+L TEMHWSFV GVVIVYGISQG
Sbjct: 1 MVEEEKLKISVEDLEEDEPQKESNVS--IGTAFYWFKLLVTEMHWSFVFGVVIVYGISQG 58
Query: 62 LGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYF 121
LGGAL RV T+YYMKDVQKVQPSEAQVY+GIT +PW+VKP+WGL TD++PI GY RRPYF
Sbjct: 59 LGGALNRVSTKYYMKDVQKVQPSEAQVYSGITYIPWMVKPIWGLFTDLVPILGYHRRPYF 118
Query: 122 ILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASD 181
+ AG LGV S+L L++HEKLHLV A+ LTA SA +AIADVTIDACVAQNS HP+LA+D
Sbjct: 119 VFAGFLGVISLLSLALHEKLHLVLAILLLTAGSASVAIADVTIDACVAQNSNIHPTLAAD 178
Query: 182 MQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNY 241
+QSLC+L S++GAL+G+SISG+ VHLIG GV+GL+ IP GL+ LVGILLNEP +PDFNY
Sbjct: 179 LQSLCALSSSVGALLGFSISGVLVHLIGSMGVYGLLVIPGGLVFLVGILLNEPHMPDFNY 238
Query: 242 KQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301
+QVN KF+ AGKAMW+TLK P VWRPCLYMYLS A+ L+I+EGLFYWYTDSK GP FSQE
Sbjct: 239 RQVNEKFVGAGKAMWSTLKIPNVWRPCLYMYLSLALCLDINEGLFYWYTDSKNGPKFSQE 298
Query: 302 TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGI 361
VGF+ S+G VGS+L A+LYQ LKD+ F+D+LFW QL+ LSGMLD LLVLRLNLKFGI
Sbjct: 299 NVGFIFSIGSVGSLLGALLYQYVLKDHQFRDLLFWTQLIFSLSGMLDFLLVLRLNLKFGI 358
Query: 362 PDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGG 421
PD+ +VIDE + ++V +LKWMPLLVLSS+LCP GIEGTFFALLMSIDN G+LS+SWGGG
Sbjct: 359 PDYFFIVIDESVHQLVNRLKWMPLLVLSSKLCPRGIEGTFFALLMSIDNVGLLSASWGGG 418
Query: 422 LLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKEETAEA 481
LLHIL+VTRT+F NLWLAILIRN+LR++PLC++FLVPRGDP++S LP EL S E +
Sbjct: 419 FLLHILQVTRTKFGNLWLAILIRNLLRLSPLCMLFLVPRGDPNSSILPTELPSSEVDNDT 478
Query: 482 S-EAENIELVALVNSID 497
S EA+NIELV+LVN ++
Sbjct: 479 SEEADNIELVSLVNGMN 495
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357437205|ref|XP_003588878.1| hypothetical protein MTR_1g014250 [Medicago truncatula] gi|355477926|gb|AES59129.1| hypothetical protein MTR_1g014250 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/504 (71%), Positives = 425/504 (84%), Gaps = 6/504 (1%)
Query: 2 MVEEENLE-APKEAVIEDESESKKGC--CGCLWTPIYWIKMLATEMHWSFVLGVVIVYGI 58
M EEEN E + E+ ++E KG C P W KML+ EMHWSFV GVV+VYGI
Sbjct: 1 MQEEENQEDSIPESKQQNEERKSKGVRIWKCFCIPSEWFKMLSREMHWSFVFGVVVVYGI 60
Query: 59 SQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRR 118
SQGLGGALA VGT+YYMKDVQKVQPSEAQVYAGITS+PWIVKPLWGLLTDVLPIFGYRR+
Sbjct: 61 SQGLGGALAGVGTKYYMKDVQKVQPSEAQVYAGITSIPWIVKPLWGLLTDVLPIFGYRRK 120
Query: 119 PYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSL 178
PYFI AG LG +MLLLS HE LHLV A+ ALTA SAG+AIADVTIDACVAQNSI HPSL
Sbjct: 121 PYFIFAGLLGATAMLLLSFHENLHLVLAILALTAGSAGVAIADVTIDACVAQNSISHPSL 180
Query: 179 ASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPD 238
ASDMQSLC+ S+IGAL+G+SISGIFVHLIGP GVFGLMTIPAGL+ILVG LL+EP++ +
Sbjct: 181 ASDMQSLCAFSSSIGALLGFSISGIFVHLIGPMGVFGLMTIPAGLMILVGFLLDEPRIQN 240
Query: 239 FNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSF 298
F+Y+QV+ F+DAGKAMWTTLK VWRPCLYMYLSFA+SLNI EG+FYWYTDSK GPSF
Sbjct: 241 FSYRQVSQNFVDAGKAMWTTLKNQDVWRPCLYMYLSFALSLNILEGMFYWYTDSKDGPSF 300
Query: 299 SQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLK 358
SQE++GF+ S+ +GS+L AILYQ +LKDY F+D+LFW QLL GLSGM DL+LV+RLNLK
Sbjct: 301 SQESIGFIFSISSIGSLLGAILYQYALKDYAFRDLLFWTQLLYGLSGMFDLILVMRLNLK 360
Query: 359 FGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSW 418
FGIPD+V +VI E I++M +LKWMP+LVLSS+LCPSGIEGTFFALLMSIDNAG+LSSSW
Sbjct: 361 FGIPDYVFVVIVESIAQMTSRLKWMPMLVLSSKLCPSGIEGTFFALLMSIDNAGLLSSSW 420
Query: 419 GGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTS-FLPAELESKEE 477
GGG +LH+LK+TRT+F NLWLAILIRNILR+TPLC++FLVPR DP++ LP E +
Sbjct: 421 GGGFVLHVLKITRTKFDNLWLAILIRNILRLTPLCMLFLVPRVDPNSFILLPKENVDSKV 480
Query: 478 TA--EASEAENIELVALVNSIDAR 499
A +ASE +++ELV+LV+S+D
Sbjct: 481 IAIDDASETKDVELVSLVHSVDGN 504
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388494474|gb|AFK35303.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/499 (70%), Positives = 425/499 (85%), Gaps = 1/499 (0%)
Query: 2 MVEEENLEAP-KEAVIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQ 60
M EEEN E P E+V E+E+E K+ CL PI+W ML+ EMHWSFV GVV+VYGISQ
Sbjct: 1 MQEEENQEDPFVESVEENENEPKRRVWNCLCIPIHWFNMLSREMHWSFVFGVVVVYGISQ 60
Query: 61 GLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPY 120
G+GGA A VGT+YYMKDVQKVQPSEAQVY+GITS+PWIVKPLWGLLTDV+PIFG+RRRPY
Sbjct: 61 GVGGAFATVGTKYYMKDVQKVQPSEAQVYSGITSIPWIVKPLWGLLTDVVPIFGFRRRPY 120
Query: 121 FILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLAS 180
FI AG +G SMLLLS+HE LHLV A+ +LTA SAG+AIADVTIDACVAQNSI HPSLA+
Sbjct: 121 FIFAGFVGAISMLLLSLHENLHLVLALLSLTAGSAGVAIADVTIDACVAQNSISHPSLAA 180
Query: 181 DMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFN 240
DMQSLC+ S++GAL+G+SISGIFVHLIGP GVFGLMTIPAGL+ILVG LLNEP++ +F+
Sbjct: 181 DMQSLCAFSSSVGALLGFSISGIFVHLIGPMGVFGLMTIPAGLVILVGFLLNEPRMHNFS 240
Query: 241 YKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQ 300
KQVN LDAGK+MW TLK VWRPCLYMYLS A+SLNI EG+FYW TDSK GP+FSQ
Sbjct: 241 CKQVNRNCLDAGKSMWNTLKSEDVWRPCLYMYLSLALSLNIFEGMFYWATDSKDGPAFSQ 300
Query: 301 ETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFG 360
E++GF+ S+ VGS+L AILYQ +LKDY F+DVLFW QLL GLSGM DL+LVLR NLKFG
Sbjct: 301 ESIGFIFSICSVGSLLGAILYQYALKDYAFRDVLFWTQLLYGLSGMFDLILVLRWNLKFG 360
Query: 361 IPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGG 420
IPD+ +V+ E I++M +LKWMP+LVLS++LCPSGIEGTFFALLMSIDN GVLS+SWGG
Sbjct: 361 IPDYFFVVVVESIAQMTSRLKWMPMLVLSTKLCPSGIEGTFFALLMSIDNLGVLSASWGG 420
Query: 421 GLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKEETAE 480
GL+LH+LK+TRT+F NLWLAILIRN+LRITPLC++FLVPR DP++S LP+E+ + + +
Sbjct: 421 GLVLHVLKITRTRFDNLWLAILIRNVLRITPLCLLFLVPRADPNSSILPSEIANSKVAVD 480
Query: 481 ASEAENIELVALVNSIDAR 499
SE ++ELV+LV+S+D +
Sbjct: 481 TSETIDVELVSLVHSVDGK 499
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443247|ref|XP_002272239.1| PREDICTED: uncharacterized protein LOC100250152 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/497 (65%), Positives = 398/497 (80%), Gaps = 7/497 (1%)
Query: 2 MVEEENLEAPKEAVIEDESESKKG----CCGCLWTPIYWIKMLATEMHWSFVLGVVIVYG 57
M E E E K ++E+ +K +W P+YW +ML E+HWSFVL VVIVYG
Sbjct: 1 MDEVEETETLKH---QEETHKRKNPKVVFWNFIWRPVYWFRMLGDELHWSFVLSVVIVYG 57
Query: 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRR 117
++QGL L+RV TQYYMKD QKVQPSEAQV+ G+ LPW++KPLWGLLTD+LPI GYRR
Sbjct: 58 MNQGLSVGLSRVSTQYYMKDEQKVQPSEAQVFFGMIQLPWVIKPLWGLLTDILPIIGYRR 117
Query: 118 RPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPS 177
RPYFI AG LGV SML L++H+K+HLV A+ +L SAG+AIADVTIDACVAQNSI HPS
Sbjct: 118 RPYFIFAGFLGVISMLSLALHKKMHLVLALLSLMTGSAGVAIADVTIDACVAQNSISHPS 177
Query: 178 LASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVP 237
LA DMQSLC L S+IGAL+GYS+SG VH +GPKGVFG++++PAGL+ILVG+ L EP V
Sbjct: 178 LAGDMQSLCGLSSSIGALVGYSLSGFLVHFVGPKGVFGVLSVPAGLVILVGMFLREPHVH 237
Query: 238 DFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPS 297
+F+Y++VN KFLDA KAMWTTLK VWRPCLYMYLS AVSLN+ EG+FYWYTD+K GPS
Sbjct: 238 NFSYRRVNQKFLDACKAMWTTLKCREVWRPCLYMYLSLAVSLNVREGMFYWYTDAKGGPS 297
Query: 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNL 357
FS+E VG + SVG VGS+L +LYQN LK++PF+D+LFW QLL GLSGMLDL+LVLR+NL
Sbjct: 298 FSKEVVGSIFSVGAVGSLLGVLLYQNVLKNHPFRDILFWTQLLYGLSGMLDLILVLRINL 357
Query: 358 KFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSS 417
K GI D+ VIDE ++ M+G++KWMPLLVLSS+LCP GIEGTFFALLMSIDN G+LSSS
Sbjct: 358 KLGISDYFFAVIDEAVTHMIGRVKWMPLLVLSSKLCPPGIEGTFFALLMSIDNVGMLSSS 417
Query: 418 WGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKEE 477
W GGLLLH+L+VTRTQF NLWL+ILIR++ RI PL ++FLVPR DP+ S LP E+ ++
Sbjct: 418 WAGGLLLHVLEVTRTQFDNLWLSILIRSMFRIIPLGLLFLVPRSDPNLSILPTEMLRTKK 477
Query: 478 TAEASEAENIELVALVN 494
+ E++NIE+ LVN
Sbjct: 478 GDDIPESDNIEMAPLVN 494
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238691|ref|NP_197887.1| major facilitator protein [Arabidopsis thaliana] gi|75104998|sp|Q5FV41.1|FBT2_ARATH RecName: Full=Probable folate-biopterin transporter 2 gi|58331763|gb|AAW70379.1| At5g25050 [Arabidopsis thaliana] gi|332006011|gb|AED93394.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/503 (64%), Positives = 404/503 (80%), Gaps = 8/503 (1%)
Query: 1 MMVEEENLEAPKEA-VIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGIS 59
M+VEE++LE V++ ES + CG P+ W+KML++E+HWSFV GVV +YGI+
Sbjct: 1 MVVEEQSLENGGSVHVVKGESNFRNVVCG----PVRWLKMLSSELHWSFVFGVVSLYGIN 56
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QGLGG+L RV T+YYMKDVQKVQPSE+Q IT +PWI+KPLWG+LTDVLPIFG+ RRP
Sbjct: 57 QGLGGSLGRVATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRP 116
Query: 120 YFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLA 179
YFILAG LGV S+L +S+H LHL A+ +T SSA +AIADVTIDAC A NSI HPSLA
Sbjct: 117 YFILAGVLGVVSLLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLA 176
Query: 180 SDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDF 239
SDMQSLCSL S+IGAL+G+ +SGI VHL+G KGVFGL+T P L+ +VGI+ +EP VP F
Sbjct: 177 SDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPHVPGF 236
Query: 240 NYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299
+YKQVN KF DAGKAMW T+K VWRP LYMY+S + LNIHEGLFYW+TDSK GP F+
Sbjct: 237 SYKQVNQKFTDAGKAMWRTMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFA 296
Query: 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKF 359
QETVGF+LS+G +GSILAA LYQ LKD+PF+ + W QLL LSGMLDL+LV RLNLKF
Sbjct: 297 QETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKF 356
Query: 360 GIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWG 419
G+PD++ +V+DE +S+M+G+LKWMPLLVL+S+LCP GIEGTFFALLMSIDNAG+++SSW
Sbjct: 357 GLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWL 416
Query: 420 GGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAEL---ESKE 476
GG++LH+LKVTRT+F NLWLA+L+RN++R+ PLC +FLVP+GD +T LP E+ +S E
Sbjct: 417 GGIMLHVLKVTRTEFGNLWLAVLVRNVMRLLPLCFLFLVPKGDQNTFKLPDEIMGEDSDE 476
Query: 477 ETAEASEAENIELVALVNSIDAR 499
E E N+EL +LV+S+D R
Sbjct: 477 EKDEKEGTRNLELASLVHSVDRR 499
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28973640|gb|AAO64142.1| putative membrane protein [Arabidopsis thaliana] gi|110737283|dbj|BAF00588.1| putative membrane protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/503 (64%), Positives = 403/503 (80%), Gaps = 8/503 (1%)
Query: 1 MMVEEENLEAPKEA-VIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGIS 59
M+VEE++LE V++ ES + CG P+ W+KML++E+HWSFV GVV +YGI+
Sbjct: 1 MVVEEQSLENGGSVHVVKGESNFRNVVCG----PVRWLKMLSSELHWSFVFGVVSLYGIN 56
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QGLGG+L RV T+YYMKDVQKVQPSE+Q IT +PWI+KPLWG+LTDVLPIFG+ RRP
Sbjct: 57 QGLGGSLGRVATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRP 116
Query: 120 YFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLA 179
YFILAG LGV S+L +S+H LHL A+ +T SSA +AIADVTIDAC A NSI HPSLA
Sbjct: 117 YFILAGVLGVVSLLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLA 176
Query: 180 SDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDF 239
SDMQSLCSL S+IGAL+G+ +SGI VHL+G KGVFGL+T P L+ +VGI+ +EP VP F
Sbjct: 177 SDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPHVPGF 236
Query: 240 NYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299
+YKQVN KF DAGKAMW T+K VWRP LYMY+S + LNIHEGLFYW+TDSK GP F+
Sbjct: 237 SYKQVNQKFTDAGKAMWRTMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFA 296
Query: 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKF 359
QETVGF+LS+G +GSILAA LYQ LKD+PF+ + W QLL LSGMLDL+LV RLNLKF
Sbjct: 297 QETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKF 356
Query: 360 GIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWG 419
G+PD++ +V+DE +S+M+G+LKWMPLLVL+S+LCP GIEGTFFALLMSIDNAG+++SSW
Sbjct: 357 GLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWL 416
Query: 420 GGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPAEL---ESKE 476
GG++LH+LKVTRT+F NLWLA+L+RN++R+ PLC +FLVP GD +T LP E+ +S E
Sbjct: 417 GGIMLHVLKVTRTEFGNLWLAVLVRNVMRLLPLCFLFLVPEGDQNTFKLPDEIMGEDSDE 476
Query: 477 ETAEASEAENIELVALVNSIDAR 499
E E N+EL +LV+S+D R
Sbjct: 477 EKDEKEGTRNLELASLVHSVDRR 499
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| TAIR|locus:2179285 | 499 | AT5G25050 "AT5G25050" [Arabido | 0.991 | 0.991 | 0.584 | 4.8e-158 | |
| TAIR|locus:2017814 | 497 | AT1G79710 "AT1G79710" [Arabido | 0.939 | 0.943 | 0.540 | 5.3e-143 | |
| TAIR|locus:2183810 | 503 | AT5G10820 "AT5G10820" [Arabido | 0.909 | 0.902 | 0.439 | 7.2e-107 | |
| TAIR|locus:2045462 | 560 | AT2G32040 "AT2G32040" [Arabido | 0.839 | 0.748 | 0.323 | 4.4e-52 | |
| UNIPROTKB|Q55721 | 494 | slr0642 "Folate-biopterin tran | 0.825 | 0.834 | 0.301 | 3e-46 | |
| TAIR|locus:2160150 | 491 | AT5G54860 "AT5G54860" [Arabido | 0.396 | 0.403 | 0.285 | 1.5e-37 | |
| GENEDB_PFALCIPARUM|MAL8P1.13 | 505 | MAL8P1.13 "integral membrane p | 0.777 | 0.768 | 0.223 | 2.5e-23 | |
| UNIPROTKB|Q8IBB7 | 505 | MAL8P1.13 "Folate/biopterin tr | 0.777 | 0.768 | 0.223 | 2.5e-23 | |
| TAIR|locus:2197803 | 542 | AT1G04570 "AT1G04570" [Arabido | 0.811 | 0.747 | 0.222 | 5.2e-22 | |
| TAIR|locus:2051078 | 538 | AT2G33280 "AT2G33280" [Arabido | 0.829 | 0.769 | 0.230 | 2.2e-20 |
| TAIR|locus:2179285 AT5G25050 "AT5G25050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1540 (547.2 bits), Expect = 4.8e-158, P = 4.8e-158
Identities = 294/503 (58%), Positives = 366/503 (72%)
Query: 1 MMVEEENLEAPKEA-VIEDESESKKGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGIS 59
M+VEE++LE V++ ES + CG P+ W+KML++E+HWSFV GVV +YGI+
Sbjct: 1 MVVEEQSLENGGSVHVVKGESNFRNVVCG----PVRWLKMLSSELHWSFVFGVVSLYGIN 56
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QGLGG+L RV T+YYMKDVQKVQPSE+Q IT +PWI+KPLWG+LTDVLPIFG+ RRP
Sbjct: 57 QGLGGSLGRVATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRP 116
Query: 120 YFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLA 179
YFILAG LGV S+L +S+H LHL A+ +T SSA +AIADVTIDAC A NSI HPSLA
Sbjct: 117 YFILAGVLGVVSLLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLA 176
Query: 180 SDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDF 239
SDMQSLCSL S+IGAL+G+ +SGI VHL+G KGVFGL+T P L+ +VGI+ +EP VP F
Sbjct: 177 SDMQSLCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPHVPGF 236
Query: 240 NYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299
+YKQVN KF DAGKAMW T+K VWRP LYMY+S + LNIHEGLFYW+TDSK GP F+
Sbjct: 237 SYKQVNQKFTDAGKAMWRTMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFA 296
Query: 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQXXXXXXXXXXXXXXXXXXXKF 359
QETVGF+LS+G +GSILAA LYQ LKD+PF+ + W Q KF
Sbjct: 297 QETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKF 356
Query: 360 GIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAXXXXXXXX 419
G+PD++ +V+DE +S+M+G+LKWMPLLVL+S+LCP GIEGTFFALLMSIDNA
Sbjct: 357 GLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWL 416
Query: 420 XXXXXHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLPXXXXXXXXXX 479
H+LKVTRT+F NLWLA+L+RN++R+ PLC +FLVP+GD +T LP
Sbjct: 417 GGIMLHVLKVTRTEFGNLWLAVLVRNVMRLLPLCFLFLVPKGDQNTFKLPDEIMGEDSDE 476
Query: 480 XXXXXXXXX---LVALVNSIDAR 499
L +LV+S+D R
Sbjct: 477 EKDEKEGTRNLELASLVHSVDRR 499
|
|
| TAIR|locus:2017814 AT1G79710 "AT1G79710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
Identities = 254/470 (54%), Positives = 340/470 (72%)
Query: 1 MMVEEENLEAPKEAVIEDESESKKGCCGC-LWTPIYWIKMLATEMHWSFVLGVVIVYGIS 59
M E E ++ + + K+G L P+ W++ML E+HWSF GV+IVYG+S
Sbjct: 1 MANRSEEAEYENDSRRNHQDKKKEGVLDLVLKRPLRWLRMLIEELHWSFFFGVIIVYGVS 60
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QGLG L++V TQYY KD QK+QPS+AQ+Y G+ +PWI+KPLWGLLTDV+P+ GYRRRP
Sbjct: 61 QGLGKGLSKVSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRP 120
Query: 120 YFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLA 179
YFILAG L + SM++L +H LHL A+S L A SAG+AIADVTIDACV Q SI HP+LA
Sbjct: 121 YFILAGFLAMISMMVLWLHTNLHLALALSCLVAGSAGVAIADVTIDACVTQCSISHPTLA 180
Query: 180 SDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDF 239
+DMQSLC LCS+IG+L+G+S+SG+ VHL+G KGV+GL+ + AGLL++VG++L E
Sbjct: 181 ADMQSLCGLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESPSRSL 240
Query: 240 NYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299
K VN KFLDAG A+W T ++ VWRPCL+M LS AVSL+IHEG+FYWYTDSK GPSFS
Sbjct: 241 GRKHVNDKFLDAGSAIWKTFQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFS 300
Query: 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQXXXXXXXXXXXXXXXXXXXKF 359
+E VG ++S G +GS++ +LYQN LK++PF++V+FWA K
Sbjct: 301 KEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRINLKL 360
Query: 360 GIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAXXXXXXXX 419
G+PD+ +V+DE +S M+ ++KW+PLLVLSS+LCP+G+EGTFFALLMSI++
Sbjct: 361 GLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWG 420
Query: 420 XXXXXHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLP 469
H LKVTRTQF NLWL I+IR++LR+ P+ ++FL+P D +++ LP
Sbjct: 421 GGVLLHALKVTRTQFDNLWLVIVIRSLLRVIPIGLVFLIPNVDSNSTILP 470
|
|
| TAIR|locus:2183810 AT5G10820 "AT5G10820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
Identities = 203/462 (43%), Positives = 291/462 (62%)
Query: 16 IEDESESK-----KGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQGLGGALARVG 70
I D SE K L P W++ML++ ++ SFVLGVV+VYG++QG G++ +V
Sbjct: 20 ISDHSEIKTKARRNAVVSVLIQPFQWLQMLSSRLNLSFVLGVVLVYGVNQGFSGSIFKVV 79
Query: 71 TQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVF 130
T YY KDVQ+VQPS Q+Y G+ +PW+++P+WGL TDV PI GY+R+PYF+++G LG+
Sbjct: 80 TDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKPYFVVSGVLGLV 139
Query: 131 SMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCS 190
S + + + KL A+S L SA +AIADV IDAC+A NSI SLA D+QSLC +CS
Sbjct: 140 SAIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIATNSINIRSLAPDIQSLCMVCS 199
Query: 191 AIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQ---VPDFNYKQVNLK 247
+ GAL+GY+ SG+FVH +GP+G G++ ++++G + E + VP K+
Sbjct: 200 SAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFIYEKRSSTVPTQKTKKDTDG 259
Query: 248 FLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVL 307
A K M T+K+P VW+P LYM++S A++++ HEG FYWYTD AGP+FSQE VG +
Sbjct: 260 LGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHFYWYTDPTAGPAFSQEFVGIIY 319
Query: 308 SVGPVGSILAAILYQNSLKDYPFQDVLFWAQXXXXXXXXXXXXXXXXXXXKFGIPDFVAL 367
+VG + S+ ++Y LK Y F+++LF+AQ GIPD + +
Sbjct: 320 AVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWNLTLGIPDSLFV 379
Query: 368 VIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAXXXXXXXXXXXXXHIL 427
+ +E ++M+ +++W+P++VLS+RLCP GIEGTFFA LM ID+ H
Sbjct: 380 ITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLASKWGGGFVLHAF 439
Query: 428 KVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPDTSFLP 469
VTR F NLWL ILIRNILR+ +C +FLVP D +P
Sbjct: 440 GVTRHDFGNLWLVILIRNILRLVTVCFVFLVPDSDHLDDLVP 481
|
|
| TAIR|locus:2045462 AT2G32040 "AT2G32040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 143/442 (32%), Positives = 221/442 (50%)
Query: 37 IKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLP 96
IK E+ V V +VY + QG+ G LAR+ +Y+KD + P+E V G++SLP
Sbjct: 116 IKFYGVELSPDNV-AVAMVYFV-QGVLG-LARLAVSFYLKDDLHLDPAETAVITGLSSLP 172
Query: 97 WIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS--MHEKLHLVFAVSALTASS 154
W+VKPL+G ++D +P+FGYRRR Y +L+G LG FS L++ + K F + S
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCI---LLGS 229
Query: 155 AGIAIADVTIDACVAQNSICHP-SLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGV 213
+A +DV +D+ V + + S++ +QSLC SA G ++ SG V G + V
Sbjct: 230 LSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFV 289
Query: 214 FGLMTIPAGLLILVGILLNEPQV--PDFNYKQ-VNLK---FLDAGKA----MWTTLKFPL 263
FG+ + + V +L+NE +V P K+ + L FL K +W +K P
Sbjct: 290 FGVTALLPLITSAVAVLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPN 349
Query: 264 VWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQN 323
V+ P L+++L + + + +FY +T +K G F+ E +G V V + S+L LY
Sbjct: 350 VFLPTLFIFL-WQATPHSDSAMFY-FTTNKLG--FTPEFLGRVKLVTSIASLLGVGLYNG 405
Query: 324 SLKDYPFQDVLFWAQXXXXXXXXXXXXXXXXXXXKFGIPDFVALVIDEGISRMVGQLKWM 383
LK P + + + GI D + D I ++ Q +M
Sbjct: 406 FLKTVPLRKIFLVTTIFGTGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFM 465
Query: 384 PLLVLSSRLCPSGIEGTFFALLMSIDNAXXXXXXXXXXXXXHILKVTRTQFHNLWLAILI 443
P+LVL++RLCP G+E T FA LMSI N +TR F NL I++
Sbjct: 466 PVLVLAARLCPEGMEATLFATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIIL 525
Query: 444 RNILRITPLCVIFLVPRGDPDT 465
N+ + PL ++ L+PR PDT
Sbjct: 526 CNLSSLLPLPLLGLLPRDSPDT 547
|
|
| UNIPROTKB|Q55721 slr0642 "Folate-biopterin transporter" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 129/428 (30%), Positives = 208/428 (48%)
Query: 39 MLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWI 98
+L W +L ++ +Y + QG+ G L+R+ +++KD + P+ G+ + PWI
Sbjct: 27 LLGNAPSWE-LLAILSIYFV-QGVLG-LSRLAVSFFLKDELGLSPAAMGALIGLGAAPWI 83
Query: 99 VKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIA 158
+KP+ GL++D +P+FGYRRR Y L+G +G LL + + L +S +A
Sbjct: 84 LKPVLGLMSDTVPLFGYRRRSYLWLSGLMGSAGWLLFAAWVSSGTQAGL-VLLFTSLSVA 142
Query: 159 IADVTIDACVAQNSICHPSLAS--DMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216
I DV +D+ V + + SLA +QSL +A+G +I SG + + VF +
Sbjct: 143 IGDVIVDSLVVERAQ-RESLAQVGSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAI 201
Query: 217 MTIPAGLLILVGILLNEPQVPDFNYK-QVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSF 275
I L + L++E + K Q + K +W ++ + P L+++ F
Sbjct: 202 TAIFPLLTVGAAFLISEVSTAEEEEKPQPKAQI----KLVWQAVRQKTILLPTLFIF--F 255
Query: 276 AVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLF 335
+ E F+++T ++ G F + +G V V V ++ LYQ LK PF+ ++
Sbjct: 256 WQATPSAESAFFYFTTNELG--FEPKFLGRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMG 313
Query: 336 WAQXXXXXXXXXXXXXXXXXXXKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPS 395
W+ GI D + D I + GQ+ +MP+LVL++RLCP
Sbjct: 314 WSTVISSLLGLTTLILITHANRAMGIDDHWFSLGDSIILTVTGQIAFMPVLVLAARLCPP 373
Query: 396 GIEGTFFALLMSIDNAXXXXXXXXXXXXXHILKVTRTQFHNLWLAILIRNILRITPLCVI 455
GIE T FALLMS+ N H L VT TQF NL L ++I N+ + PL +
Sbjct: 374 GIEATLFALLMSVMNLAGVLSFEVGSLLTHWLGVTETQFDNLALLVIITNLSTLLPLPFL 433
Query: 456 FLVPRGDP 463
L+P GDP
Sbjct: 434 GLLPAGDP 441
|
|
| TAIR|locus:2160150 AT5G54860 "AT5G54860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 58/203 (28%), Positives = 106/203 (52%)
Query: 34 IYWIKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGIT 93
I+W+K L + +F+ V ++Y +QG + Y +KD ++ PS +Q +
Sbjct: 2 IHWLKQLRSAFGVAFLWLVCLIY-FTQGFR-SFVWTAVSYQLKDRLQLSPSASQFVFSVA 59
Query: 94 SLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE--KLHLVFAVSALT 151
PW +KPL+G+++D +PI G +R PY +++ L + L+L + + ++ + LT
Sbjct: 60 FFPWSIKPLYGIISDCIPIGGKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLT 119
Query: 152 ASSAGIAIADVTIDACVAQN-SICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210
+ G A+ADV IDA +A+ + S A D+QS+ A+G + G + G + +
Sbjct: 120 VQNLGSAMADVVIDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKI 179
Query: 211 KGVFGLMTIPAGLLILVGILLNE 233
+ +F L T+ L +L L+ E
Sbjct: 180 ETIFLLFTVLPALQLLSCALVEE 202
|
|
| GENEDB_PFALCIPARUM|MAL8P1.13 MAL8P1.13 "integral membrane protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 2.5e-23, P = 2.5e-23
Identities = 90/402 (22%), Positives = 177/402 (44%)
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QG+ L + Y +KD + P+ + +PW +K +W +++D PIFGYRR+
Sbjct: 64 QGVE-VLCNLSIIYLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFGYRRKY 122
Query: 120 YFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQ-NSICHPSL 178
Y +L L + S++ L + +L + L G ++ +V +A V + N C +
Sbjct: 123 YLLLGSFLCILSLICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVESNRNCSINS 182
Query: 179 ASDMQSLCSLCSAIG-ALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVP 237
++ SL + A++ Y +SG + LI K +F + + + G + E +
Sbjct: 183 SARNVSLFFAFRKLSFAIMSY-LSGYLLLLISKKHIFLIGSFLPICVFTSGFFIIEKR-- 239
Query: 238 DFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPS 297
NY + ++K D K +++ +K + +++++ + + LF++ T+
Sbjct: 240 --NYTKSSIK--DQIKCIYSIIKLSYLKNFIIFIFIMMSTP-SCGNTLFFYITNEL---K 291
Query: 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQXXXXXXXXXXXXXXXXXXX 357
FS +G + + S ++ I Y + +L ++
Sbjct: 292 FSPNLLGKMAMFQSLASFISIISYMLFFTKIDIRKLLLYSTIIITPFCLLPLVVIKKVNY 351
Query: 358 KFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAXXXXXX 417
IP+ + + D + + + + MP+LVL SRL P G E T ++LL+S +N
Sbjct: 352 FLFIPNTLFFITDTVLIEFIAEFQTMPILVLCSRLIPEGFESTIYSLLLSSNNFASIISS 411
Query: 418 XXXXXXXHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVP 459
+ L +T T F NL I+I + I P+ ++++P
Sbjct: 412 FLSSLLTYSLNITSTNFTNLPYMIIICCLTNIIPIFFLYILP 453
|
|
| UNIPROTKB|Q8IBB7 MAL8P1.13 "Folate/biopterin transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 2.5e-23, P = 2.5e-23
Identities = 90/402 (22%), Positives = 177/402 (44%)
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QG+ L + Y +KD + P+ + +PW +K +W +++D PIFGYRR+
Sbjct: 64 QGVE-VLCNLSIIYLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFGYRRKY 122
Query: 120 YFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQ-NSICHPSL 178
Y +L L + S++ L + +L + L G ++ +V +A V + N C +
Sbjct: 123 YLLLGSFLCILSLICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVESNRNCSINS 182
Query: 179 ASDMQSLCSLCSAIG-ALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVP 237
++ SL + A++ Y +SG + LI K +F + + + G + E +
Sbjct: 183 SARNVSLFFAFRKLSFAIMSY-LSGYLLLLISKKHIFLIGSFLPICVFTSGFFIIEKR-- 239
Query: 238 DFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPS 297
NY + ++K D K +++ +K + +++++ + + LF++ T+
Sbjct: 240 --NYTKSSIK--DQIKCIYSIIKLSYLKNFIIFIFIMMSTP-SCGNTLFFYITNEL---K 291
Query: 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQXXXXXXXXXXXXXXXXXXX 357
FS +G + + S ++ I Y + +L ++
Sbjct: 292 FSPNLLGKMAMFQSLASFISIISYMLFFTKIDIRKLLLYSTIIITPFCLLPLVVIKKVNY 351
Query: 358 KFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAXXXXXX 417
IP+ + + D + + + + MP+LVL SRL P G E T ++LL+S +N
Sbjct: 352 FLFIPNTLFFITDTVLIEFIAEFQTMPILVLCSRLIPEGFESTIYSLLLSSNNFASIISS 411
Query: 418 XXXXXXXHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVP 459
+ L +T T F NL I+I + I P+ ++++P
Sbjct: 412 FLSSLLTYSLNITSTNFTNLPYMIIICCLTNIIPIFFLYILP 453
|
|
| TAIR|locus:2197803 AT1G04570 "AT1G04570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 94/423 (22%), Positives = 183/423 (43%)
Query: 51 GVVIVYGISQGLGGA--LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTD 108
G+ ++ G+ + G+ + ++M +QPS Q+ SLP + KPL+G+L+D
Sbjct: 86 GISVLCGLGYWVQGSRCFPWLALNFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLSD 145
Query: 109 VLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA--VSALTASSAGIAIADVTIDA 166
VL I RR PY + L V + + + + V V+ + S+ G +I +V DA
Sbjct: 146 VLYIGSGRRVPYIAIGVFLQVLAWGSMGIFQGAREVLPSLVACVLLSNLGASITEVAKDA 205
Query: 167 CVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL 226
VA+ + + + +QS + SA G ++G + G + PK F + + L ++
Sbjct: 206 LVAEYGLRYR--INGLQSYALMASAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLV 263
Query: 227 VGILLNEPQVPDFNYKQV--NLKFLDAGKAMWTTLKFPL----VWRPCLYMYLSFAVSLN 280
V + E F ++ L++ K + LK + + +P ++ +S A+
Sbjct: 264 VSLSSKEES---FGLPRIAETSSVLESVKKQISNLKEAIQADEISQPLIWAVVSIAMVPL 320
Query: 281 IHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQXX 340
+ +F + T + +G +G + + ++Y LK P + ++ Q
Sbjct: 321 LSGSVFCYQTQVL---NLDPSVIGMSKVIGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLL 377
Query: 341 XXXXXXXXXXXXXXXXXKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGT 400
FGI + V ++ ++ ++ Q K +P V + +CP G EG+
Sbjct: 378 YGLSILLDYILVKQINLGFGISNEVYVLCFSSLAEILAQFKILPFAVRLASMCPQGCEGS 437
Query: 401 FFALLMSIDNAXXXXXXXXXXXXXHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPR 460
+ L S +++ +T + + NL ILI+++ + PLC + LVP
Sbjct: 438 VTSFLASTLCLSQIVSAFLGVGLANLIGITSSNYSNLSSGILIQSLAALAPLCFMHLVPM 497
Query: 461 GDP 463
+P
Sbjct: 498 SEP 500
|
|
| TAIR|locus:2051078 AT2G33280 "AT2G33280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 102/442 (23%), Positives = 190/442 (42%)
Query: 37 IKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLP 96
+K + + VL + Y + QGL + + ++M ++PS Q+ SLP
Sbjct: 73 VKKVGRDEKGQTVLLCALGYWV-QGLR-CFSWLALNFHMAHCLNLKPSTLQLVQYTASLP 130
Query: 97 WIVKPLWGLLTDVLPIFGYRRRPYFILAGCL--GV-FSMLLLSMHEKLHLVFAVSALTAS 153
+ KPL+G+L+DVL I G RR PY I G L G+ + L + + L ++ + S
Sbjct: 131 MVAKPLYGVLSDVLYIGGARRVPY-ISVGVLLQGLAWGSLAIFPGAREVLPSLMAFILLS 189
Query: 154 SAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGV 213
+ G +I +V+ DA VA+ + + + +QS + SA+G ++G + G + P+ +
Sbjct: 190 NLGASITEVSQDALVAEYGLRYQ--INGLQSYALMASAVGGILGNLLGGYCLLKTPPRIL 247
Query: 214 FGLMTIPAGLLILVGIL-----LNEPQV----PDFNYKQ--VNLKFLDA-GKAMWTTLKF 261
F T L ++V + +N P++ P+ + V +FLD G +
Sbjct: 248 FLAFTALLSLQLIVSLSSKEESVNLPRIGEVTPEISSVLGIVKKQFLDLKGIVQVDEISQ 307
Query: 262 PLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILY 321
PL+W + S A+ + +F + T + +G +G + + ++Y
Sbjct: 308 PLIW-----IVSSIALVPLLSGSVFCYQTQVL---NLDPSVIGMSKVIGQLMLLCLTVVY 359
Query: 322 QNSLKDYPFQDVLFWAQXXXXXXXXXXXXXXXXXXXKFGIPDFVALVIDEGISRMVGQLK 381
K P + ++ Q FGI + ++ ++ ++ Q K
Sbjct: 360 DRYWKKLPMRALIHIVQLLYAFSLLFDYILVKQINLAFGISNTAFVLCFSSVAEILAQFK 419
Query: 382 WMPLLVLSSRLCPSGIEGTFFALLMSIDNAXXXXXXXXXXXXXHILKVTRTQFHNLWLAI 441
+P VL + +CP G EG+ + L S +++ +T + NL I
Sbjct: 420 ILPFSVLLANMCPGGCEGSITSFLASTLCLSSVVSGFTGVGMANMIGITSKNYSNLPAGI 479
Query: 442 LIRNILRITPLCVIFLVPRGDP 463
LI+++ + PL I VP +P
Sbjct: 480 LIQSLAALVPLWFIHYVPMLEP 501
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5FV41 | FBT2_ARATH | No assigned EC number | 0.6421 | 0.9919 | 0.9919 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00032797001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (506 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 499 | |||
| pfam03092 | 425 | pfam03092, BT1, BT1 family | 1e-118 | |
| TIGR00788 | 468 | TIGR00788, fbt, folate/biopterin transporter | 1e-61 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.002 |
| >gnl|CDD|111933 pfam03092, BT1, BT1 family | Back alignment and domain information |
|---|
Score = 352 bits (906), Expect = e-118
Identities = 139/411 (33%), Positives = 208/411 (50%), Gaps = 8/411 (1%)
Query: 60 QGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRP 119
QG+ G L+R+ TQ+ +KD + P+ Q +G+ +LPW++KP G+L+D +FGYRRRP
Sbjct: 1 QGVAGGLSRLSTQFMLKDRLGIDPARYQRLSGLATLPWVIKPFTGVLSDGFALFGYRRRP 60
Query: 120 YFILAGCLGVFSMLLLSMH--EKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPS 177
Y L+G LG L + ++ A + + SS G A+ DV DA ++ P
Sbjct: 61 YLALSGLLGGAFALSYGLLPAKESSAAVAAAFIFLSSLGKALVDVLSDALYSERGRQEPL 120
Query: 178 LASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVP 237
+ S CSA+G +IG +SG + P+ F + L + +L E +V
Sbjct: 121 AGPSLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAALQLLTCVDAAVLKEEEVL 180
Query: 238 DFNYKQVNLKFLDAGK----AMWTTLKFPLVWRPCLYMYLSFAVSLNIHEG-LFYWYTDS 292
+ L + W ++P + P L +A L I + +FY+ T+
Sbjct: 181 GLG-RPPVPCLLGLNREVISRNWKAFRYPEILAPTLTWISFWAAPLVIAKADMFYYQTNE 239
Query: 293 KAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLV 352
GP+FS G V +G + +L LY LK +P++ +L LSG+ DL+LV
Sbjct: 240 LGGPNFSYSFYGTVKVIGSIAGLLGVTLYNRFLKKHPYRLTFGVTTVLQVLSGLFDLILV 299
Query: 353 LRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAG 412
R N GI D V ++ D I ++ LK+MP LVL +RLCP G E T FALL SI N G
Sbjct: 300 KRWNRYLGISDHVYILGDSIILEVLYMLKFMPFLVLLARLCPRGSESTVFALLASIANLG 359
Query: 413 VLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDP 463
+ SS G LL+ L VT QF NL L +LI ++ + PL ++ L+P
Sbjct: 360 QIVSSSLGALLMEYLGVTEDQFSNLPLLLLIGSLCTLLPLPLLGLLPPSAR 410
|
Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters. One such protein, previously termed (and is still annotated as) ORFG, was shown to encode a biopterin transport protein using null mutants, thus being subsequently renamed BT1. The significant similarity of ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative transmembrane protein and another member of this family) was previously noted. This family also contains five putative Arabidopsis thaliana proteins of unknown function. In addition, it also contains two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). Length = 425 |
| >gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 1e-61
Identities = 127/443 (28%), Positives = 207/443 (46%), Gaps = 19/443 (4%)
Query: 35 YWIKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITS 94
+ + H VL + + +G+ G L R+ + D + + Q G++S
Sbjct: 13 FLGYIPVFSFHPRVVLAIGLQVLFVKGIAG-LMRLPLSPMLTDDLGLDGARYQRLVGLSS 71
Query: 95 LPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASS 154
L W +KP G+++D P+FGY +R Y +L+G LG + L + A + + ++
Sbjct: 72 LGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAA 131
Query: 155 AGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVF 214
A+ DV +D+ ++ PS + S SA G LI + G + + +F
Sbjct: 132 LAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILF 191
Query: 215 GLMTIPAGLLILVGILLNEP---------QVPDFNYKQVNLKFLDAGKA----MWTTLKF 261
+ L + V L E + N + L L K + ++
Sbjct: 192 LITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQL 251
Query: 262 PLVWRPCLYMYLSFAVSLNIHEGLFYWYTDS-KAGPSFSQETVGFVLSVGPVGSILAAIL 320
+ +P ++++LS+A +F T GPSFS G VG +GS+
Sbjct: 252 LEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFS----GMSKVVGNLGSLCGVGG 307
Query: 321 YQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQL 380
Y LK +P++ + LL LS + DL+LV R NL FGI D V ++ D I+ ++ QL
Sbjct: 308 YDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQL 367
Query: 381 KWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLA 440
K+MP LVL +RLCPSG E + FALL SI + G S + G LL+ + +T +NLWL
Sbjct: 368 KFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL 427
Query: 441 ILIRNILRITPLCVIFLVPRGDP 463
IL ++ + PL ++ L+PR +
Sbjct: 428 ILGHSLAPLLPLPLLHLLPRLED 450
|
The Folate-Biopterin Transporter (FBT) Family (TC 2.A.71)The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity [Cell envelope, Other]. Length = 468 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 54/274 (19%), Positives = 94/274 (34%), Gaps = 19/274 (6%)
Query: 48 FVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLP-WIVKPLWGLL 106
L + LG AL Y+ + + P+E + SL + +PL G L
Sbjct: 1 LFLAAFLAGLGRSLLGPALP-----LYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRL 55
Query: 107 TDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDA 166
+D + RR ++ L +LLL L L+ + L G A
Sbjct: 56 SDR-----FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQ--GLGGGALFPAAAA 108
Query: 167 CVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL 226
+A P L S +GA +G + G+ L G + F ++ I A L +
Sbjct: 109 LIAD--WFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAV 166
Query: 227 VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLF 286
+ LL +P + K + A L+ P L++ L+ + L
Sbjct: 167 LAALL----LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALL 222
Query: 287 YWYTDSKAGPSFSQETVGFVLSVGPVGSILAAIL 320
+ + S G +L + + + +L
Sbjct: 223 TYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLL 256
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 9/134 (6%)
Query: 98 IVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGI 157
+ L G L+D + RR +L L LLL+ L L+ L G
Sbjct: 49 LGSLLAGYLSDR-----FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG--LGG 101
Query: 158 AIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLM 217
A +A+ P L S +GAL+G + G+ +G + +F ++
Sbjct: 102 GALYPAAAALIAE--WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159
Query: 218 TIPAGLLILVGILL 231
I LL L+ + L
Sbjct: 160 AILGLLLALLLLFL 173
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 100.0 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 100.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.96 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.96 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.96 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.96 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.95 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.95 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.95 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.95 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.95 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.94 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.94 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.94 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.94 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.94 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.94 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.94 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.94 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.94 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.94 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.93 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.93 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.93 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.93 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.93 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.93 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.93 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.93 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.92 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.92 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.92 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.91 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.91 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.91 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.91 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.91 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.91 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.9 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.9 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.9 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.9 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.9 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.89 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.89 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.89 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.89 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.89 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.88 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.88 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.87 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.87 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.85 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.85 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.84 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.83 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.83 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.83 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.82 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.82 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.82 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.82 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.82 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.82 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.78 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.77 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.77 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.74 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.72 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.71 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.7 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.67 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.66 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 99.65 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.61 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.57 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.51 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.44 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.43 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.33 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.3 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.23 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.21 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.21 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.2 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.19 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.18 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.17 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.17 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.14 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.12 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.11 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.1 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.1 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.1 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.09 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.07 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.07 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.07 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.06 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.05 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.05 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.04 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.02 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.99 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.98 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.98 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.98 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.96 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.95 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.94 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.94 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.92 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.91 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.91 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.9 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.89 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.89 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.88 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.87 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.87 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.87 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.87 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.86 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.85 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.85 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.85 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.84 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.84 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.83 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.83 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.82 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.82 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.81 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.81 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.81 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.81 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.81 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.8 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.8 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.79 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.77 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.77 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.75 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.74 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.72 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.71 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.7 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.69 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.68 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.67 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.67 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.66 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.66 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.66 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.66 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.66 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.65 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.65 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.64 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.64 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.64 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.63 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.62 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.61 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.59 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.57 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.56 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.55 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.55 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.55 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.53 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.52 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.52 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.52 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.51 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.49 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.48 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.46 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.45 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.43 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.42 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.41 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.4 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.4 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.37 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.34 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.33 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.23 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.22 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.15 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.14 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.13 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.12 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.08 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.07 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.07 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.06 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.03 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.03 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.96 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.86 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.74 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.74 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.74 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.66 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.65 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.54 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.51 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.46 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.45 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.43 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.36 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.34 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.14 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.11 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.05 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.03 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.94 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.72 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.66 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.37 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.12 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.1 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.08 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.02 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.96 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 95.8 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.54 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.38 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.16 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 94.26 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.1 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 93.98 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.88 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 93.53 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.31 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.14 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 93.08 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 93.04 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.89 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 91.77 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.09 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 90.81 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 90.38 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 89.96 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.71 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 88.05 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 83.52 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 80.94 |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=379.14 Aligned_cols=416 Identities=35% Similarity=0.611 Sum_probs=352.5
Q ss_pred cchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccc
Q 041017 61 GLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEK 140 (499)
Q Consensus 61 g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~ 140 (499)
|+..++.+....+++++++|+++++.+.+.++..+||.+||++|.+||.+|++|+|||||++++.++.+++...++..++
T Consensus 2 G~~~~l~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~ 81 (433)
T PF03092_consen 2 GFAGGLSRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA 81 (433)
T ss_pred ChhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 45555777888899999999999999999999999999999999999999999999999999999998777777766544
Q ss_pred --hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHH
Q 041017 141 --LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMT 218 (499)
Q Consensus 141 --~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a 218 (499)
.+........++..+|.+.+|+..|++++|..+++|+.||..++..+....+|.+++..++|.+.+..++|..|.+.+
T Consensus 82 ~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 82 SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 122233456688899999999999999999999888779999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHhcccCCCCCCcc-h-----hh----hhHHHHHHHHHHHHHccCcchhhHHH-HHhhhhhcccccccc-ce
Q 041017 219 IPAGLLILVGILLNEPQVPDFN-Y-----KQ----VNLKFLDAGKAMWTTLKFPLVWRPCL-YMYLSFAVSLNIHEG-LF 286 (499)
Q Consensus 219 ~~~~~~~~~~~~~~e~~~~~~~-~-----~~----~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~~~~~~~~~~~~~-~~ 286 (499)
+...+..+..++++|++...++ . ++ .....++..+++|+.+++|.+|+..+ +.++++.. +....+ .+
T Consensus 162 ~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~a~~f 240 (433)
T PF03092_consen 162 ALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLP-PSISSASSF 240 (433)
T ss_pred HHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-cCCCCccEE
Confidence 7776664444434332211110 0 00 01125677888999999999999888 77766654 344444 67
Q ss_pred eEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 041017 287 YWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVA 366 (499)
Q Consensus 287 ~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 366 (499)
||.++..+++|+|+..+|.+..++.++.++|..++.++.+++++|+++.++.++..+..+..++++.+||...|+|+.++
T Consensus 241 y~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f 320 (433)
T PF03092_consen 241 YFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWF 320 (433)
T ss_pred EEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEE
Confidence 77777645778999999999999999999999999999999999999999998888877777888899998889999988
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHh
Q 041017 367 LVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNI 446 (499)
Q Consensus 367 ~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~ 446 (499)
.+++..+....+++.++|...+.+|+||++.||+.||+.+++.|+|..++..++..+.+.+|+++.+|++++.+++++.+
T Consensus 321 ~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~ 400 (433)
T PF03092_consen 321 ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSV 400 (433)
T ss_pred EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhcCCCCCCCCCCchhhhhhhh
Q 041017 447 LRITPLCVIFLVPRGDPDTSFLPAELESKEE 477 (499)
Q Consensus 447 ~~li~l~~~~~lp~~~~~~~~l~~~~~~~~~ 477 (499)
+.++++++++++|++++.+++++++..+.||
T Consensus 401 ~~ll~l~ll~lLp~~~~~~~~~~~~~~~~~~ 431 (433)
T PF03092_consen 401 IQLLPLPLLFLLPPQKRITDELDADGKASKK 431 (433)
T ss_pred HHHHHHHHHHHcCCCchhhHHHhhcCCcccC
Confidence 9999999999999988877777776666553
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=347.80 Aligned_cols=410 Identities=29% Similarity=0.401 Sum_probs=328.4
Q ss_pred ccchhhhhHHh-HHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhhhhHHhhhccccccCCCCcchHHH
Q 041017 44 MHWSFVLGVVI-VYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFI 122 (499)
Q Consensus 44 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~~~~g~~Rk~~ll 122 (499)
++++....++. .| +.+|+. .+....+++++++++|+|+++++.+.++..+||.++|+||+++||+|++|+|||+|++
T Consensus 22 ~~~~~~~~~~~~~y-~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~ 99 (468)
T TIGR00788 22 FHPRVVLAIGLQVL-FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLV 99 (468)
T ss_pred CCcchHHHHHHHHH-HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHH
Confidence 45555554444 55 899999 7888888899999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHH-HHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 041017 123 LAGCLGV-FSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSIS 201 (499)
Q Consensus 123 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~ 201 (499)
++.++.. ++...++..++... .....+++.+++.+.+|++.++++.|..+++++.++..+++.+...++|.++|+.++
T Consensus 100 ~~~~l~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~ 178 (468)
T TIGR00788 100 LSGLLGSAILYGLLPGKVSSAK-VAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLG 178 (468)
T ss_pred HHHHHHHHHHHHhcccccchHH-HHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHH
Confidence 9988773 44444443344322 233466888999999999999999999874445667778888888889999999999
Q ss_pred hHhhcccChhHHHHHHHHHHHHHHHHHhcccCCCCCCcc--hhh-----------hhHHHHHHHHHHHHHccCcchhhHH
Q 041017 202 GIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFN--YKQ-----------VNLKFLDAGKAMWTTLKFPLVWRPC 268 (499)
Q Consensus 202 g~l~~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~--~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (499)
|.+.+.++||..|++.++..++..+..++.||++....+ .++ ..+..++..++.++.+++|.++..+
T Consensus 179 G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l 258 (468)
T TIGR00788 179 GPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPL 258 (468)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 999999999999999887776665556678886421110 000 0112344456677888899998888
Q ss_pred HHHhh-hhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhh
Q 041017 269 LYMYL-SFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGML 347 (499)
Q Consensus 269 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~ 347 (499)
++.++ +... ++.....+++.++ ..|+++...|.+..+.+++.++|..+.+++.+|++.|+++.++.++.++..+.
T Consensus 259 ~fifl~~~~~-~~~~~~~f~~~~~---~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~ 334 (468)
T TIGR00788 259 IFIFLSYANL-PGASGSVFCATTQ---CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLF 334 (468)
T ss_pred HHHHHHHhhc-CCCCceeEEEEcc---cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhC
Confidence 88777 4332 3332333333333 38999999999998889999999999999999999999999988888776554
Q ss_pred hhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHh
Q 041017 348 DLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHIL 427 (499)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~ 427 (499)
...+..+|+...++++.+++.+...+.++..++.++|...++++.+|++.+|+.+|+++++.++|..+++.++|.+.+.+
T Consensus 335 ~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 335 DLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred ceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455567765566776666677788899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCChhHHHHHHHHhHhHHHHHHHhhcCC
Q 041017 428 KVTRTQFHNLWLAILIRNILRITPLCVIFLVPR 460 (499)
Q Consensus 428 g~~~~~~~~~~~~~~i~~~~~li~l~~~~~lp~ 460 (499)
|++.++|+..+..++++.+..++++++++++|+
T Consensus 415 g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 415 GITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999998
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=257.61 Aligned_cols=391 Identities=12% Similarity=0.106 Sum_probs=256.3
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH--
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH-- 142 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~-- 142 (499)
+.....++++++++|++++++|++.++..+..++ +|+.|+++||++.+.+||||+++.+..+.+++.+++...++.+
T Consensus 17 ~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~ 96 (437)
T TIGR00792 17 IVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSAT 96 (437)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcc
Confidence 4444556778889999999999999999999886 9999999999976655889999999988888887777766432
Q ss_pred --HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc-------ccChhHH
Q 041017 143 --LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH-------LIGPKGV 213 (499)
Q Consensus 143 --~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~-------~~gw~~~ 213 (499)
...+....++.+++.+...++..++..|+++ ++++|++..++.+.+..+|.++++.+.+.+.. ..+||++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~ 175 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITL-DPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMF 175 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHH
Confidence 1223344556677777777888899888874 35789999999998889998888777665542 4689999
Q ss_pred HHHHHHHHHHHH-HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecC
Q 041017 214 FGLMTIPAGLLI-LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDS 292 (499)
Q Consensus 214 f~~~a~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 292 (499)
+.+.+++.++.. +..+..||++++.+..++++.+.++ ..++.++||+++...+..++.............++..+.
T Consensus 176 ~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (437)
T TIGR00792 176 ALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQ---IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYV 252 (437)
T ss_pred HHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHH---HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeee
Confidence 988888776663 3456678765321111111111222 234567888877665554443332211112223444443
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHH
Q 041017 293 KAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEG 372 (499)
Q Consensus 293 ~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 372 (499)
.+ ++...+.+.....++.+++.++.+++.||+++|+.+..+.++.++..+.. .+.. .+.........
T Consensus 253 ---~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~ 319 (437)
T TIGR00792 253 ---LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF-FFAG--------SNLPLILVLII 319 (437)
T ss_pred ---cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHcc--------hhHHHHHHHHH
Confidence 34 44556666667788899999999999999999998888766655543221 1110 11112222223
Q ss_pred HHHHHHHhhhhHHHHHHHhhCC-------CChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCC------hh-H
Q 041017 373 ISRMVGQLKWMPLLVLSSRLCP-------SGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFH------NL-W 438 (499)
Q Consensus 373 l~~~~~~~~~~p~~~~~~~~~p-------~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~------~~-~ 438 (499)
+.++..+.......++.++.+| ++.+|+.+|+.+.+.++|..+++.+.|.+.+..|+....-+ .+ .
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~ 399 (437)
T TIGR00792 320 LAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKI 399 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHH
Confidence 3344444444444566666654 56789999999999999999999999999999887532111 11 1
Q ss_pred HHHHHHHhHhHHHHHHHh-hcCCCCCCCCCCchhhh
Q 041017 439 LAILIRNILRITPLCVIF-LVPRGDPDTSFLPAELE 473 (499)
Q Consensus 439 ~~~~i~~~~~li~l~~~~-~lp~~~~~~~~l~~~~~ 473 (499)
....+.++..++++++++ +.|.++++.+++.+|++
T Consensus 400 ~~~~~p~i~~~~~~~~~~~~y~l~~~~~~~i~~~l~ 435 (437)
T TIGR00792 400 LMFAVPALFLLLAAIIIGRFYKLTEKKHAEIVEELE 435 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeCcHHHHHHHHHHHh
Confidence 222333344456666665 77776665555555544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=254.52 Aligned_cols=399 Identities=16% Similarity=0.167 Sum_probs=262.5
Q ss_pred ccHHHHHHHHhhhccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhhhhHHhhhcccc
Q 041017 31 WTPIYWIKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVL 110 (499)
Q Consensus 31 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~ 110 (499)
++|.||+.. +| ...+++++ +.+|++..+.....+.+++ +.|.|.+++|.+ +....++..+|++|+++||+
T Consensus 3 ~~~l~~~~~-~~------~~~~~~l~-~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~~~~~~l~gpl~Dr~ 72 (491)
T PRK11010 3 SQYLRIFQQ-PN------SAILLILG-FASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQAYVFKFLWSPLMDRY 72 (491)
T ss_pred hhHHHHHcc-cH------HHHHHHHH-HHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcc
Confidence 347777432 22 13334444 6788887777777777776 569999999987 66777787899999999996
Q ss_pred c-cCCCCcchHHHHHhHHHHHHHHHHHhccc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHH
Q 041017 111 P-IFGYRRRPYFILAGCLGVFSMLLLSMHEK-LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSL 188 (499)
Q Consensus 111 ~-~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~ 188 (499)
. .+.+|||++++.+.+..+++...+++.+. .....+...+++.+++.+..+++.+++..|..+ +++|++..++...
T Consensus 73 ~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~--~~~rg~~~~i~~~ 150 (491)
T PRK11010 73 TPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLP--AEERGAGAAISVL 150 (491)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhHHHHHHHHH
Confidence 2 22236777888888888877777776532 122223445667788889999999999999974 4689999999999
Q ss_pred HHHHHHHHHHHHHhHhhc-ccChhHHHHHHHHHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhH
Q 041017 189 CSAIGALIGYSISGIFVH-LIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRP 267 (499)
Q Consensus 189 ~~~~G~~lg~~l~g~l~~-~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 267 (499)
+..+|.++++.+++++.+ ..|||.+|++.++..++..+..+++||+++..+++++.++ +....+.+.+++++.|..
T Consensus 151 g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 227 (491)
T PRK11010 151 GYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQ---AVVAPLRDFFGRNNAWLI 227 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhh---hHHHHHHHHHcCcCHHHH
Confidence 999999999999999988 5799999999887766655554557886543211111011 112234456667766655
Q ss_pred HHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhh
Q 041017 268 CLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVL-SVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGM 346 (499)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l 346 (499)
.+..++.............+|..+ ..|+|+.+.+.+. ..+.++.++|.++.+++.||+++|+.+.++.++.++..+
T Consensus 228 ll~~~l~~~~~~~~~~~~~~~l~~---~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l 304 (491)
T PRK11010 228 LLLIVLYKLGDAFAMSLTTTFLIR---GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNA 304 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444433322211111111122222 2789999999986 467789999999999999999988877665544443322
Q ss_pred hhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHH
Q 041017 347 LDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~ 426 (499)
....+... .++.........+..++.++...+..++..+.+|++..++.+|+.++..++|..+++.+.|.+.+.
T Consensus 305 ~~~~l~~~------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~ 378 (491)
T PRK11010 305 GYWLLSIT------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA 378 (491)
T ss_pred HHHHHHhc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 112111122223334445555555677888999999999999999999999999888899999998
Q ss_pred hCCcccCCChhHHHHHHHHhHhHHHHHHHhhcCCC
Q 041017 427 LKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRG 461 (499)
Q Consensus 427 ~g~~~~~~~~~~~~~~i~~~~~li~l~~~~~lp~~ 461 (499)
+|+ +. .+.+.+++.++++....+++++
T Consensus 379 ~G~-----~~---~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 379 HGW-----PT---FYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred hCh-----HH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 763 22 3334444455555555544443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-27 Score=233.74 Aligned_cols=357 Identities=18% Similarity=0.111 Sum_probs=257.1
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
|.-+.++.++...++ -+.+|+|+|..+.|+..+.|.++..+ .|+...++||+ .||+.++....++.++.++++
T Consensus 23 F~igttEfv~~gLLp-~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-----~Rr~lLl~~l~lFi~~n~l~a 96 (394)
T COG2814 23 FAIGTTEFVPVGLLP-PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-----ERRRLLLGLLALFIVSNLLSA 96 (394)
T ss_pred HHHHhHHHHHHhchH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHHHH
Confidence 344555545555555 45779999999999999999999987 99999999997 788899999999999999999
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHH
Q 041017 137 MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216 (499)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~ 216 (499)
+++|++. +++.|++.++..+.......++..++.+ |++|+++.++.+.+..++.++|.+++.++-+.+|||..|++
T Consensus 97 lAp~f~~--Ll~aR~~~g~a~G~f~~i~~~~a~~lvp--p~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 97 LAPSFAV--LLLARALAGLAHGVFWSIAAALAARLVP--PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred HhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcC--ccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 9999985 4678899999988888888888888884 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCC
Q 041017 217 MTIPAGLL-ILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAG 295 (499)
Q Consensus 217 ~a~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (499)
.+...++. +..+..+| +++..++ + +...++..+.+|+|+++...+..++.....+. ...|.....++.
T Consensus 173 ia~l~ll~~~~~~~~lP-~~~~~~~-~------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~---~ftYi~P~L~~v 241 (394)
T COG2814 173 IAVLALLALLLLWKLLP-PSEISGS-L------PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFA---LYTYIRPFLESV 241 (394)
T ss_pred HHHHHHHHHHHHHHhCC-CccCCCC-C------CcchhHHHHHhcCchHHHHHHHHHHHHcchhh---hHHhHHHHHHHc
Confidence 99888877 44667788 1111111 0 01233456788999988777666554332221 112322223345
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
.|+|....+++....+++.++|..+.||+.|| +.|+.+.....+.++..+. +.+.. ...+..+....+
T Consensus 242 ~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~-l~~~~--------~~~~~~~~~~~~-- 309 (394)
T COG2814 242 AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA-LTFTG--------ASPALALALLFL-- 309 (394)
T ss_pred cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH-HHHhc--------chHHHHHHHHHH--
Confidence 89999999999999999999999999999999 7777776665555554332 11111 111222221122
Q ss_pred HHHHhhhhH-HHHHHHhhCC--CChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHH
Q 041017 376 MVGQLKWMP-LLVLSSRLCP--SGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPL 452 (499)
Q Consensus 376 ~~~~~~~~p-~~~~~~~~~p--~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l 452 (499)
-++...| ...+..+..+ ++.+..+.+++.+..|+|..+|..+||.+.+.+|+.. ...++++..++++
T Consensus 310 --wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~--------~~~~~a~l~~~a~ 379 (394)
T COG2814 310 --WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA--------TGWVGAALLLLAL 379 (394)
T ss_pred --HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH--------HHHHHHHHHHHHH
Confidence 2222222 2334444433 5778889999999999999999999999999977542 2233444555555
Q ss_pred HHHhh
Q 041017 453 CVIFL 457 (499)
Q Consensus 453 ~~~~~ 457 (499)
.+...
T Consensus 380 ~~~~~ 384 (394)
T COG2814 380 LLALL 384 (394)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-27 Score=241.41 Aligned_cols=384 Identities=17% Similarity=0.164 Sum_probs=253.5
Q ss_pred HhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhhhhHHhhhccccccCC-CCcchHHHHHhHHHHHH
Q 041017 53 VIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFG-YRRRPYFILAGCLGVFS 131 (499)
Q Consensus 53 ~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~~~~g-~~Rk~~ll~~~~~~~~~ 131 (499)
..+| +.||+..++....+|.|+++ .|+|.+++|++ .+...++.++|++|+++||++..+ .|||++++++.++.+++
T Consensus 5 ~~l~-~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~-~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLG-FASGLPLALTSGTLQAWMTV-EGLDIQTIGFF-SLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHH-HHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 3456 89999988999999999985 69999999998 555567888999999999984321 26777899988888888
Q ss_pred HHHHHhccch-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc-cC
Q 041017 132 MLLLSMHEKL-HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL-IG 209 (499)
Q Consensus 132 ~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~-~g 209 (499)
+..+++.++. ..+.+....++.++..+..+++.++++.|..+ +++|++..++...+.++|.++++.+++.+.+. .|
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g 159 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLH--PEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG 159 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 8777776432 22222334445677788889999999999974 46799999999999999999999999998885 59
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEE
Q 041017 210 PKGVFGLMTIPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWY 289 (499)
Q Consensus 210 w~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 289 (499)
||..|++.++..++..+..++.||++++++++++..+ +..+...+.+|||.++..++..++.............++.
T Consensus 160 w~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l 236 (402)
T PRK11902 160 WGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGE---AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFL 236 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHH---HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999887766554445567776543321111111 1223345677888877665554443321110000111122
Q ss_pred ecCCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHH
Q 041017 290 TDSKAGPSFSQETVGFVLS-VGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALV 368 (499)
Q Consensus 290 ~~~~~~~g~s~~~~g~~~~-~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 368 (499)
.+ ..|+++.++|++.. .+.++.++|..+.+++.||+++|+.+..+.+...+..+....+.. ..++.+...
T Consensus 237 ~~---~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~------~~~~~~~~~ 307 (402)
T PRK11902 237 IR---GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV------TPKHLWTMA 307 (402)
T ss_pred HH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------cCCcHHHHH
Confidence 22 27889988898864 455678899999999999999888776655544433221111111 011222222
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHh
Q 041017 369 IDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILR 448 (499)
Q Consensus 369 ~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~ 448 (499)
....+..+..++...+..+....++++...++.+++++++.++|..+++.++|.+.+.+|+. ..+.+.++++
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~--------~~f~~~~~~~ 379 (402)
T PRK11902 308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWP--------GFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHHHHHHH
Confidence 22233334555555555566666666666677888888888888887778999999998742 2334444555
Q ss_pred HHHHHHHhhcCCC
Q 041017 449 ITPLCVIFLVPRG 461 (499)
Q Consensus 449 li~l~~~~~lp~~ 461 (499)
+++++..+..+++
T Consensus 380 ~~~~~~~~~~~~~ 392 (402)
T PRK11902 380 LPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHHHHhhh
Confidence 5555555444443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=238.14 Aligned_cols=395 Identities=16% Similarity=0.171 Sum_probs=277.4
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH--
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH-- 142 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~-- 142 (499)
+....+.+|++|..|+++..+|.+..+.-+-.++ +|+.|.++||++.+.+|||||++++.+..++.+.++-.+++..
T Consensus 30 ~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~ 109 (467)
T COG2211 30 IVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMT 109 (467)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccC
Confidence 3455666788999999999999998888887776 9999999999988777999999999999999988888877532
Q ss_pred --HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc-------ccChhHH
Q 041017 143 --LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH-------LIGPKGV 213 (499)
Q Consensus 143 --~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~-------~~gw~~~ 213 (499)
...+.+...+.+++....++++.++.+|+++ +|+||.+..++.+...++|..+...+.+.+.. ..||+..
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~-d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~ 188 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ-DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGT 188 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHH
Confidence 2233455677889999999999999999986 57899999999999999998888777766654 3467777
Q ss_pred HHHHHHHHHHHHHH-HhcccCCCCCCcchhh-hhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccc-cccceeEEe
Q 041017 214 FGLMTIPAGLLILV-GILLNEPQVPDFNYKQ-VNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNI-HEGLFYWYT 290 (499)
Q Consensus 214 f~~~a~~~~~~~~~-~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 290 (499)
..+.++...+..+. ++.++|+..+.++.++ .+.+. .+.+...++||+....++..++.... .++ .+...||.+
T Consensus 189 ~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~---~~~~~~~~~Nrp~~~~l~~~l~~~~~-~~i~~s~~~yy~~ 264 (467)
T COG2211 189 ALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKL---KDSFLLIFKNRPLLLLLLMNLLLFIA-FNIRGSIMVYYVT 264 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCccccCcccccccH---HHHHHHHHccchHHHHHHHHHHHHHH-HHHHhhhhheeEE
Confidence 77777776666444 4557887654432211 11112 22334567888866555543333222 222 234456667
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHH
Q 041017 291 DSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVID 370 (499)
Q Consensus 291 ~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 370 (499)
+. +|.++............+.+++..++.++.+|+|+|+++.++.++.++..+...+. . ..+..+.+..
T Consensus 265 y~---lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~-~-------~~~~~l~~~~ 333 (467)
T COG2211 265 YV---LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT-P-------AGSVVLIVVA 333 (467)
T ss_pred EE---cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh-c-------CcchHHHHHH
Confidence 65 66666666677777888888889999999999999999999988877765433221 1 1223333333
Q ss_pred HHHHHHHHHhhhhHHHHHHHhh-------CCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccC-CChhHHHHH
Q 041017 371 EGISRMVGQLKWMPLLVLSSRL-------CPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQ-FHNLWLAIL 442 (499)
Q Consensus 371 ~~l~~~~~~~~~~p~~~~~~~~-------~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~-~~~~~~~~~ 442 (499)
.++.++..+....-.++++++. ..++.+|..+|.++.+.++|.+++..+.|++++..|+.++. -+.......
T Consensus 334 ~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~~~al~g 413 (467)
T COG2211 334 LIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQSASALFG 413 (467)
T ss_pred HHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHH
Confidence 3444444444332224454443 56788999999999999999999999999999999997654 333222222
Q ss_pred HH-------HhHhHHHHHHHhhcCCCCCCCCCCchhhhhhh
Q 041017 443 IR-------NILRITPLCVIFLVPRGDPDTSFLPAELESKE 476 (499)
Q Consensus 443 i~-------~~~~li~l~~~~~lp~~~~~~~~l~~~~~~~~ 476 (499)
+. ++..+++++.+.+.|-+++.-+++.+|+++++
T Consensus 414 I~~~~~~~Pa~l~l~~~i~~~~y~L~~~~~~~I~~eL~~r~ 454 (467)
T COG2211 414 IRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELEQRK 454 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 22 22334444445577887777777888888886
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=242.21 Aligned_cols=377 Identities=14% Similarity=0.050 Sum_probs=238.7
Q ss_pred hhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh-----c
Q 041017 65 ALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM-----H 138 (499)
Q Consensus 65 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~-----~ 138 (499)
.+.....+.+. ++++.++.+.|++.+...+++.+ +|+.|+++||+ +||+.++.+..+.+++...++. .
T Consensus 34 ~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (417)
T PRK10489 34 GLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-----DRKKLILLARGTCGLGFIGLALNAFLPE 107 (417)
T ss_pred HHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-----CCceEEEehHHHHHHHHHHHHHHHHcCC
Confidence 34555665554 46788999999999999999886 89999999997 5666666666666655444332 2
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHH
Q 041017 139 EKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMT 218 (499)
Q Consensus 139 ~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a 218 (499)
++++ .+...+++.+++.+...+...+++.|..+ +++|++..++.+...++|..+|+.+++.+.+..+|++.|++.+
T Consensus 108 ~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 108 PSLL--AIYLLGLWDGFFGSLGVTALLAATPALVG--RENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred CcHH--HHHHHHHHHHHHHHHHHHHHhhhhhhccC--HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333 33456677777777666666777777764 3678999999999999999999999999999889999998877
Q ss_pred HHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCC
Q 041017 219 IPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSF 298 (499)
Q Consensus 219 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 298 (499)
+..++..+..+.+||++++++++++ +.++..+.....+++|.++...+..++..... ......+.|..+ ..|+
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~---~~g~ 256 (417)
T PRK10489 184 AGTFITLLPLLRLPALPPPPQPREH---PLRSLLAGFRFLLASPVVGGIALLGGLLTMAS-AVRVLYPALADE---VWQM 256 (417)
T ss_pred HHHHHHHHHHHhCCCCCCCCccccc---chHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-hHHHhhHHHHHh---ccCC
Confidence 6665555555567775443221111 11111222344567777554443333221111 111111112222 2688
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHH
Q 041017 299 SQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVG 378 (499)
Q Consensus 299 s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (499)
++...|++.....++.+++..+.+++.||.++++.+..+.++.++..+. +.. .++.........+.++..
T Consensus 257 ~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~g~~~ 326 (417)
T PRK10489 257 GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGL-FGL---------MPMWILAVLCLALFGYLS 326 (417)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHH-HHc---------cchHHHHHHHHHHHHHHH
Confidence 8888899888888999999999999998877666666655544443211 111 112122222223333333
Q ss_pred HhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHhhc
Q 041017 379 QLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLV 458 (499)
Q Consensus 379 ~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~~l 458 (499)
+.......+++.+..|++.||+.+|+++...++|..+||.++|.+.+.+|... .......+..++.++....+
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVA-------SASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHHHHHHHhc
Confidence 33223334678899999999999999999999999999999999999876321 12222233334444445566
Q ss_pred CCCCCCCCCCchhhhhhhhhhhh
Q 041017 459 PRGDPDTSFLPAELESKEETAEA 481 (499)
Q Consensus 459 p~~~~~~~~l~~~~~~~~~~~~~ 481 (499)
|+.|+ .++|+-||||+|
T Consensus 400 ~~~~~------~~~~~~~~~~~~ 416 (417)
T PRK10489 400 GELRR------FRQTPPEVDASD 416 (417)
T ss_pred ccccc------cccccccCCCCC
Confidence 77654 233444566655
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=237.39 Aligned_cols=343 Identities=15% Similarity=0.059 Sum_probs=232.3
Q ss_pred HHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALT 151 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (499)
+.+++++|+|+++.|+..+.+.+++.+ +++.|+++||+ +||+.+..+..+.+++++.++++++++. +++.++
T Consensus 33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~r~ 105 (390)
T PRK03545 33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-----ERRKLLIGLFVLFIASHVLSALAWNFTV--LLISRI 105 (390)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHH
Confidence 356778999999999999999988876 88899999997 6778888899999999889999888774 345677
Q ss_pred HHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHH-HHhc
Q 041017 152 ASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL-VGIL 230 (499)
Q Consensus 152 l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~-~~~~ 230 (499)
+.+++.+...+...+++.|..+ +++|++++++...+.++|..++|++++.+.+.+|||++|++.++..++..+ ....
T Consensus 106 ~~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~ 183 (390)
T PRK03545 106 GIAFAHAIFWSITASLAIRVAP--AGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887777777888888874 468999999999999999999999999999999999999998887766533 3445
Q ss_pred ccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHH
Q 041017 231 LNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVG 310 (499)
Q Consensus 231 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 310 (499)
+||++++++. ..++..+.+|+|.++......++..............+..+ ..|+|+...+.+....
T Consensus 184 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~g~s~~~~~~~~~~~ 250 (390)
T PRK03545 184 LPLLPSEHSG----------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQ---VAGLSENFATLLLLLF 250 (390)
T ss_pred CCCCCCCCcc----------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccHHHHHHHHH
Confidence 6665332110 11234466788876654333322211111111111122222 2678888888888888
Q ss_pred HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 041017 311 PVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSS 390 (499)
Q Consensus 311 ~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 390 (499)
.++.+++..+.+++.||+++|+.. .+..+....... + ... .++....+....+.++..........+.+.
T Consensus 251 ~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~-l-~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 320 (390)
T PRK03545 251 GGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLL-L-LPA-------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVL 320 (390)
T ss_pred HHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHH-H-HHH-------hchHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 889999999999999999877643 333333222111 1 111 111112122222333332222233345666
Q ss_pred hhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHh
Q 041017 391 RLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIF 456 (499)
Q Consensus 391 ~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~ 456 (499)
+..| +.+++++|+++...++|..+||.++|.+.+.+|+. ..+.+.+++.+++++...
T Consensus 321 ~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~--------~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 321 KLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS--------SIGYVGAALALAALVWSI 377 (390)
T ss_pred HhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--------HHHHHHHHHHHHHHHHHH
Confidence 7766 57899999999999999999999999999987743 223344444455554443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-27 Score=244.25 Aligned_cols=411 Identities=12% Similarity=0.089 Sum_probs=255.4
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH--
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH-- 142 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~-- 142 (499)
+....+++|+++.+|+++.++|.+..+..+..++ +|++|.++||++.+.+||||+++++.+..++++.++...++.+
T Consensus 24 ~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~ 103 (473)
T PRK10429 24 IVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGT 103 (473)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCcc
Confidence 4444556788889999999999999888887776 9999999999877666889999999999888876665444221
Q ss_pred --HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc-------ccChhHH
Q 041017 143 --LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH-------LIGPKGV 213 (499)
Q Consensus 143 --~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~-------~~gw~~~ 213 (499)
...+++...+..++.+..++++.++..|+++ ++++|.++.++.+.+.++|..+.+.+...+.+ ..+|+..
T Consensus 104 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~-~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~ 182 (473)
T PRK10429 104 AQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL-DKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMF 182 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 1122334455677888889999999999986 46789999998888888887666655544332 1246666
Q ss_pred HHHHHHHHHHHH-HHHhcccCCCCCCcc--hhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEe
Q 041017 214 FGLMTIPAGLLI-LVGILLNEPQVPDFN--YKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYT 290 (499)
Q Consensus 214 f~~~a~~~~~~~-~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 290 (499)
..+.++...+.. +.++..||++....+ .++++.+.++. +..+++||.++..+...++.............|+..
T Consensus 183 ~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~ 259 (473)
T PRK10429 183 TLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDI---VALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFT 259 (473)
T ss_pred HHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEE
Confidence 555555554443 334457776432211 11111112222 234568888766555444433321111222235545
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHH
Q 041017 291 DSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVID 370 (499)
Q Consensus 291 ~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 370 (499)
+. .+ ++...+.+.....++.+++.++.+++.||+|+|+.+.++.++.++..+....... ....+.+..+..
T Consensus 260 y~---~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~ 330 (473)
T PRK10429 260 YV---IG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL-----AAPHNALLIVIA 330 (473)
T ss_pred EE---CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-----cCchhHHHHHHH
Confidence 43 23 4455666666677888899999999999999999987776654443322111100 001111222222
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhCC-------CChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCCh------h
Q 041017 371 EGISRMVGQLKWMPLLVLSSRLCP-------SGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHN------L 437 (499)
Q Consensus 371 ~~l~~~~~~~~~~p~~~~~~~~~p-------~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~------~ 437 (499)
..+.++..+.......++++|.++ ++.+|..+|..+.+.++|..+++.+.|.+.+..|+..+.-+. +
T Consensus 331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~~~~~q~~~~~~~i 410 (473)
T PRK10429 331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYVPNVEQSAQTLLGM 410 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHH
Confidence 333444444444444567777744 566889999999999999999999999999999985422111 1
Q ss_pred -HHHHHHHHhHhHHHHHHH-hhcCCCCCCCCCCchhhhhhhhhhhhhc-ccccee
Q 041017 438 -WLAILIRNILRITPLCVI-FLVPRGDPDTSFLPAELESKEETAEASE-AENIEL 489 (499)
Q Consensus 438 -~~~~~i~~~~~li~l~~~-~~lp~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 489 (499)
+....+-+++.+++++++ .+.|-++++.+++++|+++.++..+|++ .|.++-
T Consensus 411 ~~~~~~~p~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 465 (473)
T PRK10429 411 QFIMIGLPTLFFMITLVLYFRYYRLNGDFLRRIQIHLLDKYRKVPPEPVHAEIPV 465 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeCCHHHHHHHHHHHHHHHhccCcCcccccccc
Confidence 111112222223444444 4678877777778888876653334434 666654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=253.52 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=146.3
Q ss_pred hccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHH
Q 041017 43 EMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYF 121 (499)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~l 121 (499)
.++|.++..+++++ +.++++.......++ .+++++|+++.+.+++.+++.++.++ .+++|+++||+ +||+.+
T Consensus 163 ~~~~~l~~i~~l~~-~~~g~d~~~is~ilp-~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-----GRR~~l 235 (742)
T TIGR01299 163 RFQWALFFVLGLAL-MADGVEVFVVGFVLP-SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-----GRKQCL 235 (742)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHH
Confidence 34566656666655 667777666666665 45668999999999999999999887 78899999997 677788
Q ss_pred HHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 041017 122 ILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSIS 201 (499)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~ 201 (499)
+++.++.+++.++++++++++. +++.+++.|++.+...+...+++.|..+ ++.|++..++.+.+..+|.++++.++
T Consensus 236 ii~lil~~i~~ll~afa~s~~~--llv~R~l~G~g~g~~~p~~~~~isE~~p--~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 236 LICLSVNGFFAFFSSFVQGYGF--FLFCRLLSGFGIGGAIPIVFSYFAEFLA--QEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887664 4567888899988888888999999984 36899999999999999999999887
Q ss_pred hHhhcc-------------cChhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 041017 202 GIFVHL-------------IGPKGVFGLMTIPAGLLILVGILLNEPQVP 237 (499)
Q Consensus 202 g~l~~~-------------~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~ 237 (499)
..+... .+||+.+++.+++.++.++..+++||+|++
T Consensus 312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrw 360 (742)
T TIGR01299 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360 (742)
T ss_pred HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 666542 368999888777776666667789999865
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=239.91 Aligned_cols=388 Identities=15% Similarity=0.100 Sum_probs=246.2
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH---
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH--- 142 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~--- 142 (499)
....+++|++|++|+|++++|.+.++..+..++ +|+.|.++||++.+.+||||+++.+.+..+++..++...|+.+
T Consensus 28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~ 107 (444)
T PRK09669 28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG 107 (444)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 345556788899999999999999999988776 9999999999987777899999999888877776655555421
Q ss_pred -HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc-------ccChhHHH
Q 041017 143 -LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH-------LIGPKGVF 214 (499)
Q Consensus 143 -~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~-------~~gw~~~f 214 (499)
...+.+...+.+.+.....+++.++.+|+++ ++++|++..++.....++|..+++.+...+.. ..+|+..+
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~-~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~ 186 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITN-DPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAM 186 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 1122333344566666778889999999885 35789998898888888888888766554432 24677777
Q ss_pred HHHHHHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCC
Q 041017 215 GLMTIPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSK 293 (499)
Q Consensus 215 ~~~a~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 293 (499)
.+.++...+..+ .++..||+++++++ ++ .+ ..+.+++.+|||.++......++.............||.++.
T Consensus 187 ~i~~ii~~v~~~~~~~~~~e~~~~~~~-~~--~~---~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~- 259 (444)
T PRK09669 187 MVMGLLGVVLFFCCFFMTKERYTPEVD-NS--SS---VWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYV- 259 (444)
T ss_pred HHHHHHHHHHHHHHhCCeEEecCCCCc-CC--CC---HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeee-
Confidence 777766655533 34455665332211 11 11 223455678899876665444433222111112223555543
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHH
Q 041017 294 AGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGI 373 (499)
Q Consensus 294 ~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 373 (499)
.+ ++...+.+.....++.+++.++.+++.||+++|+.+.++.+..++..+.. .+.. ..+.+.......+
T Consensus 260 --~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~i 328 (444)
T PRK09669 260 --LL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALI-FFIP-------PSNVWLIFALNIL 328 (444)
T ss_pred --cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHhC-------cchHHHHHHHHHH
Confidence 23 23334455556677888888899999999999998877665544322211 1111 1122222222334
Q ss_pred HHHHHHhhhhHHHHHHHhhC-------CCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCCh----h----H
Q 041017 374 SRMVGQLKWMPLLVLSSRLC-------PSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHN----L----W 438 (499)
Q Consensus 374 ~~~~~~~~~~p~~~~~~~~~-------p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~----~----~ 438 (499)
.++..+.......++++|.. .++.+|..+|..+.+.++|..+|+.++|.+.+..|+..+.-++ . .
T Consensus 329 ~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~~~~~q~~~~~~~i~~ 408 (444)
T PRK09669 329 FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVGGAAVQSASVLTTINL 408 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 44444444333456676665 3567899999999999999999999999999999985331111 1 1
Q ss_pred HHHHHHHhHhHHHHHHHhhcCCCCCCCCCCchhhh
Q 041017 439 LAILIRNILRITPLCVIFLVPRGDPDTSFLPAELE 473 (499)
Q Consensus 439 ~~~~i~~~~~li~l~~~~~lp~~~~~~~~l~~~~~ 473 (499)
....+-++..+++++++++.|-++++.+++++|++
T Consensus 409 ~~~~~p~~~~~~~~~~~~~y~l~~~~~~~i~~~l~ 443 (444)
T PRK09669 409 LFTVIPGVLFAGMAIILNFYKLNDARVEAIAQELV 443 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHh
Confidence 11112223334555556677877666555666654
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=240.75 Aligned_cols=389 Identities=8% Similarity=-0.022 Sum_probs=234.5
Q ss_pred hhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhH----HHHH--HHhhhchhhh-hhHHhhhccccccCCCCcchHHH
Q 041017 50 LGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSE----AQVY--AGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFI 122 (499)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~----~g~~--~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll 122 (499)
....+++ +.+++|..++....+ ++.++++.+.++ .+.. .++..+++.+ ++++|+++||+ +||+.+.
T Consensus 19 ~~~~~g~-~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Grr~~l~ 91 (490)
T PRK10642 19 TAASLGN-AMEWFDFGVYGFVAY-ALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-----GRQKILA 91 (490)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH-HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHH
Confidence 4444555 678888777777775 556677543322 2221 3556677777 78899999997 6888899
Q ss_pred HHhHHHHHHHHHHHhccchHH------HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHH
Q 041017 123 LAGCLGVFSMLLLSMHEKLHL------VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALI 196 (499)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~l 196 (499)
++.++.+++++++++++++.. ..++..|+++|++.+...+...+++.|..+ +++||+..++...+..+|.++
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p--~~~Rg~~~~~~~~~~~~G~~l 169 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP--DRKRGFMGSWLDFGSIAGFVL 169 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC--CCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999998753 135678899999999888888899999884 368999999988888888888
Q ss_pred HHHHHhHhh--------cccChhHHHHHHHHHHHHHHHHHhcccCCCCCCcchhh--h--hHHHH-HHHHHHHHHccC-c
Q 041017 197 GYSISGIFV--------HLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNYKQ--V--NLKFL-DAGKAMWTTLKF-P 262 (499)
Q Consensus 197 g~~l~g~l~--------~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~~~--~--~~~~~-~~~~~~~~~l~~-~ 262 (499)
|+.+...+. ..+|||++|++.+++.++.+++...+||+++..+..++ + .+... +....+.+.+++ +
T Consensus 170 g~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (490)
T PRK10642 170 GAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHW 249 (490)
T ss_pred HHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhH
Confidence 876654432 35799999998665555444455678887654211000 0 00000 000112233332 1
Q ss_pred chhhHHH-HHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 041017 263 LVWRPCL-YMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLS 341 (499)
Q Consensus 263 ~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~ 341 (499)
+.+.... ..++....+.......+.+... .+|++....+.......++.+++.++.+++.||+|+|+.+..+.+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 326 (490)
T PRK10642 250 RSLLTCIGLVIATNVTYYMLLTYMPSYLSH---NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVAL 326 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2111111 1111111111111111122222 26787776666666778888899999999999999999877665433
Q ss_pred HHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHH
Q 041017 342 GLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGG 421 (499)
Q Consensus 342 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g 421 (499)
.+..+..+.... .+.....+....+.++..+....+...+..+.+|++.||+.+|+...+.++++.++|.+.+
T Consensus 327 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g 399 (490)
T PRK10642 327 FVLAIPAFILIN-------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA 399 (490)
T ss_pred HHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221111111 0111111111222233323333334566778999999999999877777777888999999
Q ss_pred HHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHhhcCCCCCC
Q 041017 422 LLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRGDPD 464 (499)
Q Consensus 422 ~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~~lp~~~~~ 464 (499)
.+.+..+ ++ +....+..+.+++.++..+++||++..
T Consensus 400 ~l~~~~~----~~---~~~~~~~~~~~~i~~~~~~~~pes~~~ 435 (490)
T PRK10642 400 WLVESTQ----NL---MMPAYYLMVVAVIGLITGVTMKETANR 435 (490)
T ss_pred HHHHHhC----Cc---hHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 8887543 11 111112223344444455567887653
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=241.03 Aligned_cols=359 Identities=15% Similarity=0.080 Sum_probs=242.4
Q ss_pred hHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHH
Q 041017 51 GVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGV 129 (499)
Q Consensus 51 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~ 129 (499)
.+++.+ +.++++.+......+.+. +++|.|+.+.+++.+.+.++..+ .|++|+++||+ +||+.++.+..+.+
T Consensus 14 ~~~~~~-~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~ 86 (471)
T PRK10504 14 IVAFGF-FMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-----GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHH-HHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHH
Confidence 333444 455666555666676655 57999999999999888888765 88999999997 56677777777777
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC
Q 041017 130 FSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG 209 (499)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g 209 (499)
++.+.++++++.+. +...+++.+++.+...+...+++.|..+ +++|++..+..+.+.++|..+||.++|.+.++.|
T Consensus 87 ~~~~~~~~~~~~~~--l~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g 162 (471)
T PRK10504 87 LGSLFCALSGTLNE--LLLARVLQGVGGAMMVPVGRLTVMKIVP--REQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHhCCHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 77777777777654 3456788899888877778888888774 3678999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHH-HHhcccCCCCCCcchhhh------------------hH-------HH---------------
Q 041017 210 PKGVFGLMTIPAGLLIL-VGILLNEPQVPDFNYKQV------------------NL-------KF--------------- 248 (499)
Q Consensus 210 w~~~f~~~a~~~~~~~~-~~~~~~e~~~~~~~~~~~------------------~~-------~~--------------- 248 (499)
||+.|++......+..+ .....|+.+....+.+.. .+ ..
T Consensus 163 w~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (471)
T PRK10504 163 WHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYL 242 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999886655544433 333445433221110000 00 00
Q ss_pred -HHHH--H--HHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 041017 249 -LDAG--K--AMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQN 323 (499)
Q Consensus 249 -~~~~--~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~ 323 (499)
++.. + .-.+.+|||+++..+...++............++|.++. .|.++...++......++.+++..+.++
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 319 (471)
T PRK10504 243 LHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG---LGFSPFHAGLMMIPMVLGSMGMKRIVVQ 319 (471)
T ss_pred HHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 012467788776655554444332111111122333332 6888888888888888888888899999
Q ss_pred HhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHH
Q 041017 324 SLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFA 403 (499)
Q Consensus 324 ~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~g 403 (499)
+.||+++|+++..+.++.++..+... .... .++.+.......+.++..+....+...+..+..|++.+|+.+|
T Consensus 320 l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 392 (471)
T PRK10504 320 VVNRFGYRRVLVATTLGLALVSLLFM-LVAL------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS 392 (471)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHH-hccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHH
Confidence 99999999998877665555432211 1100 1111111112223334444455566677888999999999999
Q ss_pred HHHHHHhhHHHhHHHHHHHHHHHhCCc
Q 041017 404 LLMSIDNAGVLSSSWGGGLLLHILKVT 430 (499)
Q Consensus 404 l~~~~~~lg~~ig~~l~g~l~~~~g~~ 430 (499)
+.+...++|..+|+.++|.+.+..|+.
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999988764
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=234.73 Aligned_cols=358 Identities=15% Similarity=0.072 Sum_probs=236.3
Q ss_pred ccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHH
Q 041017 44 MHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFI 122 (499)
Q Consensus 44 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll 122 (499)
++|..+..+++.. +.++++....+...+. +.+++|.|+++.+++.+...++..+ .++.|+++||+ +||+.++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~ 84 (406)
T PRK11551 12 RLALTIGLCFLVA-LLEGLDLQSAGVAAPR-MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-----GRKRILI 84 (406)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHH
Confidence 3555555555555 6777776666666654 5678999999999999999999876 88999999997 5677788
Q ss_pred HHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHh
Q 041017 123 LAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISG 202 (499)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g 202 (499)
.+.++..++.+.++++++++. +++.+++.+++.+...+...+++.|..+ +++|++.+++.+.+..+|..+++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~ 160 (406)
T PRK11551 85 VSVALFGLFSLATAQAWDFPS--LLVARLLTGVGLGGALPNLIALTSEAVG--PRLRGTAVSLMYCGVPFGGALASVIGV 160 (406)
T ss_pred HHHHHHHHHHHHHHHhccHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777888887764 3456788888888887788888999874 368999999999999999999999998
Q ss_pred HhhcccChhHHHHHHHHHHHHHH-HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccc
Q 041017 203 IFVHLIGPKGVFGLMTIPAGLLI-LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNI 281 (499)
Q Consensus 203 ~l~~~~gw~~~f~~~a~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 281 (499)
.+.+..+||+.|++.++..++.. +...++||++++.+++++. ++.++..+..++..+++..+......++........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (406)
T PRK11551 161 LAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG-KQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFL 239 (406)
T ss_pred HHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc-hhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888899999998776655543 3445678875432211000 000011111111111122222211111111110000
Q ss_pred cccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 041017 282 HEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGI 361 (499)
Q Consensus 282 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~ 361 (499)
....+.+.. +.|+++...+.......++.+++.++.+++.||+++|+.+..+.+...+..+. +.. .
T Consensus 240 ~~~~p~~~~----~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~---------~ 305 (406)
T PRK11551 240 LNWLPSLLV----GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAA-LAA---------A 305 (406)
T ss_pred HHHHHHHHH----hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHh---------c
Confidence 000111212 26788888888888888899999999999999999998877654444332211 111 1
Q ss_pred CchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHh
Q 041017 362 PDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHIL 427 (499)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~ 427 (499)
++.........+.++..........++..|..|++.+|+..|+.+.+.++|..++|.++|.+.+..
T Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 306 PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 111111112222333332223334577889999999999999999999999999999999998753
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=230.29 Aligned_cols=344 Identities=18% Similarity=0.149 Sum_probs=236.6
Q ss_pred chhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc-
Q 041017 62 LGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE- 139 (499)
Q Consensus 62 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~- 139 (499)
+..++....++.+.. +++.++.+.|++.++..++..+ +|++|+++||+ +||+.++.+..+..++...+++.+
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 13 IGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-----DRKKVMIGADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666654 6899999999999999999876 89999999997 567777777777777666666655
Q ss_pred ----chHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHH
Q 041017 140 ----KLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFG 215 (499)
Q Consensus 140 ----~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~ 215 (499)
+.+. +...+++.+++.+...+...+++.|..++ ++|++..++.+.+..+|.++|+.+++.+.+..|||+.|+
T Consensus 87 ~~~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 87 LGGLNIWQ--VYVLAGILAIAQAFFTPAYQAMLPDLVPE--EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred cCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5543 44567788899888888889999998853 589999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhc--ccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhcccccc-ccceeEEecC
Q 041017 216 LMTIPAGLLILVGIL--LNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIH-EGLFYWYTDS 292 (499)
Q Consensus 216 ~~a~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ 292 (499)
+.++..++..+..+. .||++++++++.+ ++..++..+.....+|+|.++...+..++......... ...+++..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (365)
T TIGR00900 163 VDAVGFAISALLIVSVRIPELAASEIQALS-NAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY 241 (365)
T ss_pred HHHHHHHHHHHHHHhcccccCCCccccccc-hhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 877665554333332 3433321111100 01111222234456678887665554443332211111 1122332322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHH
Q 041017 293 KAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEG 372 (499)
Q Consensus 293 ~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 372 (499)
+|.++.+.+.+.....++.+++.++.+++.||+++|+.+..+....++.... ..... ++.+.......
T Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~ 309 (365)
T TIGR00900 242 ---LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV-VGLTP--------PNFPLFLVLWF 309 (365)
T ss_pred ---hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-HHhhc--------hhHHHHHHHHH
Confidence 6788888898888888899999999999999999888877665544443221 11111 11222222334
Q ss_pred HHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 373 ISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 373 l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+.++..+....+..++..|..|++.+|+.+|+.+.+.+++..++|.++|.+.+.+|
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555555444556788999999999999999999999999999999999998754
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=227.75 Aligned_cols=342 Identities=13% Similarity=0.074 Sum_probs=218.7
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+..++..++.....+.++++++|.|+++.|++.+.+.+...+ +|++|.++||+ | |||++++.+.....++.+.++
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~---g-~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ---G-DRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---C-CchHHHHHHHHHHHHHHHHHH
Confidence 344455455666667778889999999999999988877654 99999999997 2 555566666666666667777
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccc--hHHHHHHHHHHHHHHHHHHHhHhhcccChhHHH
Q 041017 137 MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASD--MQSLCSLCSAIGALIGYSISGIFVHLIGPKGVF 214 (499)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~--~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f 214 (499)
++++++.. +..+++.+.+.+...+..+++..|..++ ++|++ ..+....+.++|.++|+++++.+.+.+|||+.|
T Consensus 83 ~~~~~~~l--~~~~~~~g~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f 158 (375)
T TIGR00899 83 WNRNYFLL--LVLGVLLSSFASTANPQLFALAREHADR--TGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMF 158 (375)
T ss_pred hcchHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHhhh--cchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHH
Confidence 87876542 3344555555555556667777776543 33443 357777788999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCC
Q 041017 215 GLMTIPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSK 293 (499)
Q Consensus 215 ~~~a~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 293 (499)
++.++..++..+ .++++||+++++.++++ . .+..+.+++|+.+......++............+.+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 228 (375)
T TIGR00899 159 LTAALAFVLCGVLVWLFLPSYPRGAPGALT-R-------LEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIH-- 228 (375)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCcccccC-c-------chhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHH--
Confidence 998877665533 44557876543321110 0 111234556665543333222211110011111122222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHH
Q 041017 294 AGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGI 373 (499)
Q Consensus 294 ~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 373 (499)
..|.++.+.+.+.....+..+++..+.+++.||+++|+.+..+.+...+..+ .+... ++.+.......+
T Consensus 229 -~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~ 297 (375)
T TIGR00899 229 -ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYT---GLAAD-------NSLWALLMLQLL 297 (375)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHH
Confidence 2678888888877666667778888999999999999988776554433221 11111 111222222233
Q ss_pred HHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 374 SRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 374 ~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
.++..+........+..|..|+ ++++++|+++...++|..++|.++|.+.+..|+
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~ 352 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSY 352 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444333345667787776 567999999999999999999999999987663
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=236.73 Aligned_cols=360 Identities=13% Similarity=0.080 Sum_probs=237.6
Q ss_pred cchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHH
Q 041017 45 HWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFIL 123 (499)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~ 123 (499)
+++.+..+.+.+ +.++++........+ .+++++|+|+.+.++..++..++..+ +|+.|+++||+ +||+.+++
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-----g~r~~l~~ 88 (426)
T PRK12307 16 QKNALFSAWLGY-VFDGFDFMLIFYIMY-LIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-----GRKPLMMW 88 (426)
T ss_pred HHHHHHHHHHHH-HHHHhHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHH
Confidence 445455666666 567776655555554 56788999999999999999999887 88999999996 67888889
Q ss_pred HhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhH
Q 041017 124 AGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGI 203 (499)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~ 203 (499)
+.++.+++...++++++.+. +.+.+++.|++.+...+...+++.|..+ +++|+++.++.+.+..+|.++++.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~--l~~~r~l~G~g~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 89 SIVAYSVGTGLSGLASGVIM--LTLSRFIVGMGMAGEYACASTYAVESWP--KHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHhCC--HhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 99999888888888887764 4567788999988888888888888874 3679999999999999999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHHHHHhcccCCCCCCcch---h-hhhH-HHHHHHHHHHHHccCcchhhHHHHHhh---hh
Q 041017 204 FVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNY---K-QVNL-KFLDAGKAMWTTLKFPLVWRPCLYMYL---SF 275 (499)
Q Consensus 204 l~~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~---~-~~~~-~~~~~~~~~~~~l~~~~~~~~~l~~~~---~~ 275 (499)
+.+..+||+.|++..++.++.+......||++++.++. + +..+ ..+......++.+++|.++........ ..
T Consensus 165 l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (426)
T PRK12307 165 FAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIF 244 (426)
T ss_pred HcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 98889999999875443333222223345543211100 0 0000 000011134556777766543322111 11
Q ss_pred hccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhc
Q 041017 276 AVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRL 355 (499)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~ 355 (499)
..........+.+... .|+++...+.+.....++.+++..+.+++.||+++|+.+..+.+..++..+. .....
T Consensus 245 ~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~-- 317 (426)
T PRK12307 245 GANWPIFGLLPTYLAG----EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFP-LFRIP-- 317 (426)
T ss_pred HHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHc--
Confidence 0000011111122222 5778888888777888899999999999999999998887766554443221 11111
Q ss_pred ccccCCCchhhHHHHHHHHHHH-HHhh-hhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 356 NLKFGIPDFVALVIDEGISRMV-GQLK-WMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
...... ... .+.+.. .... ......++.|..|++.+|+++|+...+.++|+.++|.++|++.+.+|+
T Consensus 318 -----~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~ 386 (426)
T PRK12307 318 -----QDNYLL-LGA-CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL 386 (426)
T ss_pred -----cccHHH-HHH-HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence 011111 111 111111 1111 111235678999999999999999999999999999999999988763
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=233.80 Aligned_cols=343 Identities=11% Similarity=-0.008 Sum_probs=218.9
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
......+.+ .+++|+|+++.|++.+.+.+++.+ +|+.|+++||+ +||+.+.++.++..+++++++++++++.
T Consensus 41 ~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~- 113 (434)
T PRK11663 41 SFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-----NARYFMGIGLIATGIINILFGFSSSLWA- 113 (434)
T ss_pred hHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-----CCchhHHHHHHHHHHHHHHHHHHhHHHH-
Confidence 345555544 567999999999999999999876 89999999997 6777888899888888888888887764
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
+...+++.+++.+...+...+++.|..+ +++|++.+++.+.+.++|.++++.+++.+.+.+|||+.|++.++..++.
T Consensus 114 -l~~~~~l~g~~~g~~~~~~~~~~~~~~~--~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 114 -FALLWVLNAFFQGWGWPVCAKLLTAWYS--RTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred -HHHHHHHHHHHHHccchHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 2345566677777666677788888874 3679999999999999999999999999999999999999887766554
Q ss_pred -HHHHhcccCCCCCCc--c----hh---hh-hHHH--HHHHHHHH--HHccCcchhhHHHHHhhhhhccccccccceeEE
Q 041017 225 -ILVGILLNEPQVPDF--N----YK---QV-NLKF--LDAGKAMW--TTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWY 289 (499)
Q Consensus 225 -~~~~~~~~e~~~~~~--~----~~---~~-~~~~--~~~~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 289 (499)
++..+++||++++.. + ++ +. +++. +...++.+ ..+++|.+|...+..++............+.+.
T Consensus 191 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 270 (434)
T PRK11663 191 GLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYM 270 (434)
T ss_pred HHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677643210 0 00 00 0000 00112221 256778777665443332221111111111222
Q ss_pred ecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchhHHH-HHHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 041017 290 TDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDY--PFQDVLF-WAQLLSGLSGMLDLLLVLRLNLKFGIPDFVA 366 (499)
Q Consensus 290 ~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~--~~r~~l~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 366 (499)
.+ ..|+|..+.+.......++.++|.++.+++.||+ ++|+... ...+...+.. ..+.... ......
T Consensus 271 ~~---~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~ 339 (434)
T PRK11663 271 SE---TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSV-GSLWLMP-------FASYVM 339 (434)
T ss_pred Hh---ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHH-HHHHHcc-------cccHHH
Confidence 22 2688888888877777788889999999988887 3333322 2111111111 1111111 011111
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 367 LVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 367 ~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
........++..............|..|++.+|+..|+.+.+.++|..++|.+.|.+.+..|+
T Consensus 340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~ 402 (434)
T PRK11663 340 QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHW 402 (434)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhccc
Confidence 111111111111111111234567889999999999999999999999999999999997663
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=229.94 Aligned_cols=361 Identities=13% Similarity=0.080 Sum_probs=239.2
Q ss_pred cchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHH
Q 041017 45 HWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFIL 123 (499)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~ 123 (499)
+|+.+..+++.+ +.++++........+. +++++|+|+++.+++.++..++..+ +|+.|+++||+ +||+.+++
T Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~~~~ 82 (405)
T TIGR00891 10 QWNAFSAAWLGW-LLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-----GRRLPMVT 82 (405)
T ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHH
Confidence 444445555666 6777776666667654 5678999999999999999999876 89999999997 57777888
Q ss_pred HhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhH
Q 041017 124 AGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGI 203 (499)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~ 203 (499)
+.++.+++.+.++++++++. +...+++.|++.+...+...+++.|..+ +++|+++.++.+.+..+|.++++.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 158 (405)
T TIGR00891 83 SIVLFSAGTLACGFAPGYIT--MFIARLVIGIGMGGEYGSSAAYVIESWP--KHLRNKASGLLISGYAVGAVVAAQVYSL 158 (405)
T ss_pred HHHHHHHHHHHHHHhccHHH--HHHHHHHHHhhhhhhhHHHHHHHHHhCC--hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888764 3456788899988888888889999874 3689999999999999999999999998
Q ss_pred hhcccC--hhHHHHHHHHHHHHHHHHHhcccCCCCCCcchhh---hhHHHHH----------HHHHHHHHccC--cchhh
Q 041017 204 FVHLIG--PKGVFGLMTIPAGLLILVGILLNEPQVPDFNYKQ---VNLKFLD----------AGKAMWTTLKF--PLVWR 266 (499)
Q Consensus 204 l~~~~g--w~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~----------~~~~~~~~l~~--~~~~~ 266 (499)
+.+..+ ||+.|.+.+++.++..+.....||++++.+++++ ..+..++ ..++.....++ ++.+.
T Consensus 159 l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (405)
T TIGR00891 159 VVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWP 238 (405)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhH
Confidence 887766 9999988665555444455567876543211100 0000000 00000000000 11111
Q ss_pred H----HHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 041017 267 P----CLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSG 342 (499)
Q Consensus 267 ~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~ 342 (499)
. .....+............+.+..+ ..|++..+.+.+.....++.+++..+.+++.||+++|+.+..+.+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~ 315 (405)
T TIGR00891 239 TFVYLVVLVLFANLYSHPIQDLLPTYLKA---DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQ 315 (405)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHH
Confidence 1 111111111110111111112122 268888888988888889999999999999999999998877665543
Q ss_pred HHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHH
Q 041017 343 LSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGL 422 (499)
Q Consensus 343 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~ 422 (499)
+..+. ... . .++.........+.++...........++.|.+|++.+|+++|+.+.+.++|..++|.++|.
T Consensus 316 ~~~~~-~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~ 386 (405)
T TIGR00891 316 LLIIP-VFA-I-------GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL 386 (405)
T ss_pred HHHHH-HHH-h-------CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 32211 111 1 01111111111222333333333445678899999999999999999999999999999999
Q ss_pred HHHHhC
Q 041017 423 LLHILK 428 (499)
Q Consensus 423 l~~~~g 428 (499)
+.+..|
T Consensus 387 l~~~~g 392 (405)
T TIGR00891 387 LAQRLD 392 (405)
T ss_pred HHHhcc
Confidence 999876
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=222.79 Aligned_cols=360 Identities=17% Similarity=0.154 Sum_probs=230.4
Q ss_pred hhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhhhhHHhhhccccccC-CCCcchHHHHHhHHH
Q 041017 50 LGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIF-GYRRRPYFILAGCLG 128 (499)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~~~~-g~~Rk~~ll~~~~~~ 128 (499)
..+..+| +.||+..++....++.+++ +.|+|++++|++ ++..+++..+++++++.||+..+ .+|||.+++....+.
T Consensus 4 ~~~~~ly-~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~-~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 4 ITLGLLY-LSQGIPIGLAMDALPTLLR-EDGAPLTALAFL-PLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHH-HHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHH-HHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 4455677 8999998888888888876 579999999987 66677888888888888875322 225666655544433
Q ss_pred HHHHHHHH-h--ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh
Q 041017 129 VFSMLLLS-M--HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV 205 (499)
Q Consensus 129 ~~~~~~~~-~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~ 205 (499)
..+...++ + ..+...+ .+...++.++..+..|+..|++..|..+ +++++...+....+..+|.++|+...+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~d~~~d~~~~~~~~--~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~ 157 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGW-AVGLLACASLASATQDIATDGMAAEHFN--GRTLAKGNAVQIAGVMIGFFGGGAGTLVLF 157 (390)
T ss_pred HHHHHHHHcCCcchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCC--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32333333 2 1221211 2233455667788889999999887653 345677777777788899999998888999
Q ss_pred cccChhHHHHHHHHHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccc
Q 041017 206 HLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGL 285 (499)
Q Consensus 206 ~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 285 (499)
+++|||..|++.++..++..+..++.+|+++++++.++ +..++.++.+|+|.++......++............
T Consensus 158 ~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 231 (390)
T TIGR02718 158 GKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPL------ARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLS 231 (390)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccch------hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888776654444444443222111110 112345677888887766655555433211111111
Q ss_pred eeEEecCCCCCCCChhHHHHHHHHHH-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 041017 286 FYWYTDSKAGPSFSQETVGFVLSVGP-VGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDF 364 (499)
Q Consensus 286 ~~~~~~~~~~~g~s~~~~g~~~~~~~-i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 364 (499)
..|..+ .|+++++.|.+..... ...++|..+.+++.||+++|+.+..+.++.+...+........+ ..+..
T Consensus 232 ~~~l~~----~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~ 303 (390)
T TIGR02718 232 KLYLVD----AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW----LAPGI 303 (390)
T ss_pred hHHHHh----cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc----cCCcH
Confidence 122222 6899999999876554 57778889999999999999988776655433222111111111 01221
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHhhCCC-ChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 365 VALVIDEGISRMVGQLKWMPLLVLSSRLCPS-GIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~-~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
........+.++..+....+..+...+.+++ +.+|+.+++.+++.++|..++|.++|.+.+..|+
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~ 369 (390)
T TIGR02718 304 AVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY 369 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1222222233344455555556666677776 8899999999999999999999999999998763
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-25 Score=230.50 Aligned_cols=391 Identities=12% Similarity=0.074 Sum_probs=242.9
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH--
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH-- 142 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~-- 142 (499)
+....+.+|++|..|+++..+|.+..+..+..++ +|+.|.++||++.+.+|||||++++.+..++++.++...|+..
T Consensus 27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~ 106 (460)
T PRK11462 27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMN 106 (460)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcc
Confidence 4455566788899999999999999888888776 9999999999987767999999999888888877766555321
Q ss_pred --HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc-------cChhHH
Q 041017 143 --LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL-------IGPKGV 213 (499)
Q Consensus 143 --~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~-------~gw~~~ 213 (499)
...+.+...+..++....++++.++.+|+++ ++++|++..++.+.+.++|..+++.+...+... .+|+..
T Consensus 107 ~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~-d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~ 185 (460)
T PRK11462 107 GKMIYAAITYTLLTLLYTVVNIPYCALGGVITN-DPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG 185 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 1223334455678888889999999999986 478999999999999999988888776655443 357766
Q ss_pred HHHHHHHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecC
Q 041017 214 FGLMTIPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDS 292 (499)
Q Consensus 214 f~~~a~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 292 (499)
..+.+++..+... .+...||+++.+++ + .+.++ .+...++||.++..+...++.........+...||.++.
T Consensus 186 ~~i~~ii~~i~~~i~~~~~kE~~~~~~~-~---~~~~~---~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~ 258 (460)
T PRK11462 186 IAVLSVVAFMMLAFCFFTTKERVEAPPT-T---TSMRE---DLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI 258 (460)
T ss_pred HHHHHHHHHHHHHHHHhcceeccCCCcc-C---CCHHH---HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Confidence 6666665555433 33445665432211 1 11222 345667888765544333332221111112233555554
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHH
Q 041017 293 KAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEG 372 (499)
Q Consensus 293 ~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 372 (499)
.|. +...+.+..+..++.++|..+.+++.||+++|+.+..+..+..+..+. +.+.+ ............
T Consensus 259 ---~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~ 326 (460)
T PRK11462 259 ---LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLA-MFFVP-------MQASITMFVFIF 326 (460)
T ss_pred ---cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHhc-------hhHHHHHHHHHH
Confidence 332 334455566677888889999999999999888766544433332221 11111 111111111112
Q ss_pred HHHHHHHhhhhHHHHHHHhhCC-------CChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCC---h-hHH--
Q 041017 373 ISRMVGQLKWMPLLVLSSRLCP-------SGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFH---N-LWL-- 439 (499)
Q Consensus 373 l~~~~~~~~~~p~~~~~~~~~p-------~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~---~-~~~-- 439 (499)
+.++..+.......++.++..+ ++.+|..++..+.+.++|..+++.++|.+++..|+..++-. . ...
T Consensus 327 l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~~~~~q~~~~~~~i~ 406 (460)
T PRK11462 327 VIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAAEKAQNSATISIII 406 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence 2233222222222344454433 67789999999999999999999999999998888542211 1 111
Q ss_pred --HHHHHHhHhHHHHHHHh-hcCCCCCCCCCCchhhhhhh
Q 041017 440 --AILIRNILRITPLCVIF-LVPRGDPDTSFLPAELESKE 476 (499)
Q Consensus 440 --~~~i~~~~~li~l~~~~-~lp~~~~~~~~l~~~~~~~~ 476 (499)
...+-++..+++++++. +.|-++++.+++++|+++.|
T Consensus 407 ~~~~~~P~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~~~ 446 (460)
T PRK11462 407 ALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQGK 446 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 11122222334444443 56777666666777765443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-26 Score=228.13 Aligned_cols=345 Identities=13% Similarity=0.078 Sum_probs=230.0
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+..+...+ .+... +++++++|+|.++.|+..+++.+++.+ +|+.|.++||+ +||+.++.+.++.+++.+.++
T Consensus 14 ~~~~~~~~-~~~~~-~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-----G~r~~~~~~~~~~~~~~~~~~ 86 (377)
T TIGR00890 14 FTSGYVYT-WTLLA-PPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-----GPRAVAMLGGILYGLGFTFYA 86 (377)
T ss_pred HHhhHHhh-hhhHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-----CccchhHHhHHHHHHHHHHHH
Confidence 44454332 23333 467789999999999999999999887 89999999997 566777888888888888888
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHH
Q 041017 137 MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216 (499)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~ 216 (499)
++++++. +...+.+.+++.+.........+.+.. |++|+++.+....+.++|..+++++.+.+.+..|||+.|++
T Consensus 87 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 87 IADSLAA--LYLTYGLASAGVGIAYGIALNTAVKWF---PDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHH--HHHHHHHHhHHHHHHHHhHHHHHHHHc---CcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 8888764 345566778877765544444555544 45799999999999999998888788788888899999999
Q ss_pred HHHHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCC
Q 041017 217 MTIPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAG 295 (499)
Q Consensus 217 ~a~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (499)
.++..++..+ ..+++||++++..+++++.+ +..+..++.+|+|+++...+..++.............++. ++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 234 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIGYPPGQLIKTNIEVS---VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYG----QS 234 (377)
T ss_pred HHHHHHHHHHHHHHheecCchhccccCcccc---hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHH----HH
Confidence 8887766533 34455554332211111000 1112334667888876554443332221111111111111 12
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.++.+.+.+.....++.+++.++.+++.||+++|+.+..+.++.++..+. ...... . ..........+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~------~-~~~~~~~~~~~~g 306 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAA-MLFIPM------L-NDVLFLATVALVF 306 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHHccc------c-hhHHHHHHHHHHH
Confidence 6778878888888888899999999999999999999887776665554322 111110 0 1111111122223
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
+..+.......++..|..|++++|+.+|+.+...++|..++|.++|.+.+..|+
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 360 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF 360 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 333333333456788999999999999999999999999999999999987663
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=233.44 Aligned_cols=360 Identities=12% Similarity=-0.016 Sum_probs=250.7
Q ss_pred hhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHh
Q 041017 47 SFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAG 125 (499)
Q Consensus 47 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~ 125 (499)
..+..+++.+ +...+|.+..+.+.|.+ .+++|.+.++.+++.+.+.++... +|++|+++||+ +||+.++.+.
T Consensus 6 ~~~~~~~~~~-~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-----Grk~~l~~~~ 78 (495)
T PRK14995 6 LTLVIIVLVY-IPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-----GFKRLLMLGG 78 (495)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHH
Confidence 3445566666 78888888888888765 568999999999999999999875 89999999997 7888999999
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh
Q 041017 126 CLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV 205 (499)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~ 205 (499)
+++.++.+.+++++|.+. +++.++++|+|.+...+...+.+.+... ++++|++.+++......+|..+||.+++.+.
T Consensus 79 ~~~~~~~~~~~~a~~~~~--li~~r~l~G~g~~~~~~~~~~~l~~~~~-~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 79 TLFGLASLAAAFSPTASW--LIATRALLAIGAAMIVPATLAGIRATFT-EEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998774 4567888899988776655555655442 2368999999999999999999999999999
Q ss_pred cccChhHHHHHHHHHHHHH-HHHHhcccCCCCCCcchhhhhHH-------------HHH-------H-------------
Q 041017 206 HLIGPKGVFGLMTIPAGLL-ILVGILLNEPQVPDFNYKQVNLK-------------FLD-------A------------- 251 (499)
Q Consensus 206 ~~~gw~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~-------------~~~-------~------------- 251 (499)
+++|||+.|++.....++. ++..+++||++++++++.+.... .++ .
T Consensus 156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (495)
T PRK14995 156 EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL 235 (495)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 9999999999876555544 33455677754332111110000 000 0
Q ss_pred -----HHHH--------HHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 041017 252 -----GKAM--------WTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAA 318 (499)
Q Consensus 252 -----~~~~--------~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~ 318 (499)
..+. ++.+|+|.+....+..++............+.+.+. ..|+|+.+.|.......++..++.
T Consensus 236 l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~---v~g~s~~~ag~~~~~~~~~~~~~~ 312 (495)
T PRK14995 236 LGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQF---VHGLSPLEAGMFMLPVMVASGFSG 312 (495)
T ss_pred HHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000 245666665544443333222111100011112222 278999999999988899999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChh
Q 041017 319 ILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIE 398 (499)
Q Consensus 319 ~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~ 398 (499)
.+.+++.||+++|+.+..+.++.++.... +.... . .+..+.......+.++..+....+......+..|++++
T Consensus 313 ~~~g~l~~r~g~~~~~~~g~~~~~~~~~~-l~~~~-~-----~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~ 385 (495)
T PRK14995 313 PIAGILVSRLGLRLVATGGMALSALSFYG-LAMTD-F-----STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKA 385 (495)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHH-HHHhc-C-----CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhc
Confidence 99999999999988877666555443221 11111 0 11112222234455566666666667777888999999
Q ss_pred HHHHHHHHHHHhhHHHhHHHHHHHHHHH
Q 041017 399 GTFFALLMSIDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 399 g~~~gl~~~~~~lg~~ig~~l~g~l~~~ 426 (499)
|++.++++..+++|..+|+.+.|.+.+.
T Consensus 386 g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 386 AAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=229.07 Aligned_cols=361 Identities=11% Similarity=0.037 Sum_probs=237.4
Q ss_pred ccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHH
Q 041017 44 MHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFI 122 (499)
Q Consensus 44 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll 122 (499)
.+|+.+..+++.| +.+.++-...+...+ .+++++|+|+++.|+..+++.+++.+ +++.|+++||+ +||+.+.
T Consensus 5 ~~~~~~~~~~~~~-~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----G~r~~~~ 77 (412)
T TIGR02332 5 LFRRLIIFLFILF-IFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-----GARRWIA 77 (412)
T ss_pred ehhHHHHHHHHHH-HHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-----ChHHHHH
Confidence 4566777777777 567776655666665 67789999999999999999999887 88999999997 6777888
Q ss_pred HHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHh
Q 041017 123 LAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISG 202 (499)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g 202 (499)
.+.++..++...++++++... +...|++.|++.+...+...+++.|..+ +++|++.+++.+.+..+|.++++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--l~~~r~l~G~~~~~~~~~~~~~~~~~~~--~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 78 GIMVLWGIASTATMFATGPES--LYLLRILVGIAEAGFLPGILLYLTFWFP--AYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988988888764 3457788899988777666677788774 367999999999999999999999999
Q ss_pred Hhhc------ccChhHHHHHHHHHHHHH-HHHHhcccCCCCCCc---chh-hhh-HHH---------------H--HHHH
Q 041017 203 IFVH------LIGPKGVFGLMTIPAGLL-ILVGILLNEPQVPDF---NYK-QVN-LKF---------------L--DAGK 253 (499)
Q Consensus 203 ~l~~------~~gw~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~---~~~-~~~-~~~---------------~--~~~~ 253 (499)
++.+ ..|||++|++.+++.++. .+.++++||+|++.+ +++ +.. +.. + ...+
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQR 233 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Confidence 8864 469999999988877665 445667888775421 100 000 000 0 0001
Q ss_pred HHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhH
Q 041017 254 AMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDV 333 (499)
Q Consensus 254 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~ 333 (499)
..++.+++|.+|...+..++............+.++.+ .+.|+++.+.+.+.....++.++|..+.+++.||+++|+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~--~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 234 SMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQS--FNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 12333345665554443332221111111111122222 1246777778888888889999999999999999987764
Q ss_pred HH-HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhH-HHHHHHhhCCCChhHHHHHHHHHHHhh
Q 041017 334 LF-WAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMP-LLVLSSRLCPSGIEGTFFALLMSIDNA 411 (499)
Q Consensus 334 l~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~~~p~~~~g~~~gl~~~~~~l 411 (499)
.. ...+...+. + .+... .+..........+..+ +.....+ ......+..|++.+|+++|+.+...++
T Consensus 312 ~~~~~~~~~~~~-~--~~~~~-------~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~ 380 (412)
T TIGR02332 312 HTALPYLFAAAG-W--LLASA-------TDHNLIQLLGIIMASM-GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNI 380 (412)
T ss_pred HHHHHHHHHHHH-H--HHHHh-------cCCHHHHHHHHHHHHH-HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhh
Confidence 33 222222221 1 11111 1111111111111111 1111122 223445678999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhC
Q 041017 412 GVLSSSWGGGLLLHILK 428 (499)
Q Consensus 412 g~~ig~~l~g~l~~~~g 428 (499)
|..++|.+.|.+.+..|
T Consensus 381 g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 381 GSALSPFLIGILKDATG 397 (412)
T ss_pred hhhhhhhhcccccccCC
Confidence 99999999999988754
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=221.98 Aligned_cols=334 Identities=19% Similarity=0.181 Sum_probs=218.5
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhhhhHHhhhcccccc--CCCCcchHHHHHhHHHHHHHHHHHhccchH-
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPI--FGYRRRPYFILAGCLGVFSMLLLSMHEKLH- 142 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~~~--~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~- 142 (499)
+.....+.++ +++|+|.+++|+..+. .+++.++|++|+++||++. .| |||++++.+.+..++++..+++.++..
T Consensus 6 ~~~~~~~~~~-~~~g~s~~~~g~~~~~-~~~~~~~~~~g~~~Dr~~~~~~G-rr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 6 LVGNTLPYWL-RSKNVSLKTIGFFSLV-GLPYSLKFLWSPLVDTVYLPFFG-RRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hHHhHHHHHH-HHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCCC-ccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 3445555554 5789999999999654 7777779999999999853 24 677778888888887777777764322
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC--------hhHHH
Q 041017 143 LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG--------PKGVF 214 (499)
Q Consensus 143 ~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g--------w~~~f 214 (499)
...+....++.+++.+..+++.++++.|..+ +++|+++.++...+.++|.++++.+++.+.+..+ ||..|
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILS--DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 1122334455677888889999999999984 4789999999999999999999999999988888 99999
Q ss_pred HHHHHHHHHHHHHHh-cccCCCCCCcchhhhhHHHHHHHHHHHHHccCcc---hhhHHHHHhhhhhccccccccceeEEe
Q 041017 215 GLMTIPAGLLILVGI-LLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPL---VWRPCLYMYLSFAVSLNIHEGLFYWYT 290 (499)
Q Consensus 215 ~~~a~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~ 290 (499)
++.++..++..+..+ ..||+++.++..++++++. ...+.+.+++|. ++...+..++.............+|..
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAV---LKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLL 237 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccchhHHHHH---HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988876665544433 4577543221111111111 123344556664 444444333332221111111222322
Q ss_pred cCCCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcc-cccCCCchhhHH
Q 041017 291 DSKAGPSFSQETVGFVLSV-GPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLN-LKFGIPDFVALV 368 (499)
Q Consensus 291 ~~~~~~g~s~~~~g~~~~~-~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~ 368 (499)
+ .|+++.+++.+... +.++.++|.++.+++.||+++|+.+..+.++.++............. ...+.+..+...
T Consensus 238 ~----~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (356)
T TIGR00901 238 D----MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLF 313 (356)
T ss_pred H----cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence 2 68899988877654 55778899999999999999988887776665554322111111100 000112223233
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh
Q 041017 369 IDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA 411 (499)
Q Consensus 369 ~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l 411 (499)
....+.++..+....+..++.+|.+|++++|+.+|+++++.++
T Consensus 314 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 356 (356)
T TIGR00901 314 LTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSAL 356 (356)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Confidence 3344556666666777789999999999999999999887763
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=221.12 Aligned_cols=386 Identities=13% Similarity=0.068 Sum_probs=252.8
Q ss_pred HHHhhhccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCC
Q 041017 38 KMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYR 116 (499)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~ 116 (499)
...++..++++++..+++|....=.+- -.+.+.| .+.++.++|.+|+|.+.+++.+.|.+ |.+.|.+|||. +
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~Rk-nF~~a~p-~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-----n 92 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRK-NFNLAMP-ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-----N 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhccH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-----C
Confidence 445666688888888888854333222 3455655 56678899999999999999999998 89999999986 6
Q ss_pred cchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHH
Q 041017 117 RRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALI 196 (499)
Q Consensus 117 Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~l 196 (499)
-|.++-.+++++++..++++++++... +.++.++.|+..+...++....++...+ +++||+..++.+.+.++|+.+
T Consensus 93 pr~fm~~gLilsai~nil~Gfs~s~~~--~~~l~~lng~fQg~Gwpp~~~~i~~Wfs--r~eRG~~~siWn~shNiGGal 168 (448)
T COG2271 93 PRYFMAFGLILSAIVNILFGFSPSLFL--FAVLWVLNGWFQGMGWPPCARTITHWFS--RKERGTWWSIWNTSHNIGGAL 168 (448)
T ss_pred CceeehHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCCcHHHHHHHHHcC--ccccCceEEEehhhhhcccch
Confidence 677899999999999999999987663 3344566666666666666667776664 368999999999999999999
Q ss_pred HHHHH--hHhhcccChhHHHHHHHHHHHHH-HHHHhcccCCCCCCcch-----h-hh-h--HHHHH-----HHHH-HHHH
Q 041017 197 GYSIS--GIFVHLIGPKGVFGLMTIPAGLL-ILVGILLNEPQVPDFNY-----K-QV-N--LKFLD-----AGKA-MWTT 258 (499)
Q Consensus 197 g~~l~--g~l~~~~gw~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~-----~-~~-~--~~~~~-----~~~~-~~~~ 258 (499)
.+++. +++..+.+||..|++-++..+++ ++.++..+++|+...-+ + +. + ++.++ ..+. ...+
T Consensus 169 ~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YV 248 (448)
T COG2271 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYV 248 (448)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHH
Confidence 99999 88888889999999998888777 55667778777653210 0 00 0 00000 0111 2347
Q ss_pred ccCcchhhHHHHHh-hhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchhHHH
Q 041017 259 LKFPLVWRPCLYMY-LSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDY--PFQDVLF 335 (499)
Q Consensus 259 l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~--~~r~~l~ 335 (499)
++||.+|...+..+ ++..-+ .+..-.+.|..+ ..|+|....++.....-.+.+.|.++.|++.||. |+|....
T Consensus 249 L~Nk~iW~la~a~vfvYivR~-gi~dW~p~YL~e---~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~ 324 (448)
T COG2271 249 LKNKLIWLLALANVFVYVVRY-GINDWGPLYLSE---VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA 324 (448)
T ss_pred HcChHHHHHHHHHHHHHHHHH-HHhhhHHHHHHH---hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHH
Confidence 89999988765443 332221 111111222233 2788888888777777778888888888888764 5555443
Q ss_pred HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh-HHH
Q 041017 336 WAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA-GVL 414 (499)
Q Consensus 336 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~ 414 (499)
+.+.+.....+....+.+ + .+.++......+.++.-..-.+-......|..|++..|++.|+...+..+ |.+
T Consensus 325 ~i~~~~i~~~~~~~w~~~--~-----~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~ 397 (448)
T COG2271 325 LIFMLLITASLVLYWLAP--N-----GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAA 397 (448)
T ss_pred HHHHHHHHHHHHHHHcCC--C-----ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHH
Confidence 333332222221111111 0 11122222222222222211222334567999999999999999999999 888
Q ss_pred hHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHH
Q 041017 415 SSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRIT 450 (499)
Q Consensus 415 ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li 450 (499)
.+....|++.|.+|+ +..+.++.++++++.+
T Consensus 398 ~a~~~~g~i~d~~gW-----~g~Fi~~~~~a~l~~l 428 (448)
T COG2271 398 LAGLPLGYIADTWGW-----DGGFIVLSIAALLAIL 428 (448)
T ss_pred hcCCcceeeEecCCC-----cchHHHHHHHHHHHHH
Confidence 888888888887553 3344444444444333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=224.05 Aligned_cols=387 Identities=10% Similarity=0.015 Sum_probs=231.1
Q ss_pred hhHHhHHhhhccchhhhhhhhHHHHhhhcc--CCChhHHHHHHH-----hhhchhhh-hhHHhhhccccccCCCCcchHH
Q 041017 50 LGVVIVYGISQGLGGALARVGTQYYMKDVQ--KVQPSEAQVYAG-----ITSLPWIV-KPLWGLLTDVLPIFGYRRRPYF 121 (499)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~--g~s~~~~g~~~~-----~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~l 121 (499)
....+.+ +.+++|........+.++.+++ +.++. .++..+ +..++..+ +++.|+++||+ +||+.+
T Consensus 25 ~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-----Grr~~l 97 (438)
T PRK09952 25 LGSFAGA-VVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-----GRKRML 97 (438)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-----ccHHHH
Confidence 4444455 6677776666666554555555 77776 455432 22233334 56789999997 677888
Q ss_pred HHHhHHHHHHHHHHHhccchHH------HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHH
Q 041017 122 ILAGCLGVFSMLLLSMHEKLHL------VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGAL 195 (499)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~ 195 (499)
+.+.++.+++++++++++++.. ..++..|+++|++.+...+....++.|..+ +++|++..+..+.+..+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p--~~~rg~~~~~~~~g~~~G~~ 175 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP--KNKKAFYSSGVQVGYGVGLL 175 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC--CCCCcHHHHHHHHHHHHHHH
Confidence 8899999999999999998752 134567899999998887777888899875 36799999998989999998
Q ss_pred HHHHHHhHhh--------cccChhHHHHHHHHHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhH
Q 041017 196 IGYSISGIFV--------HLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRP 267 (499)
Q Consensus 196 lg~~l~g~l~--------~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 267 (499)
+++.+...+. ..+|||++|++.+++.++........||++++.+.+++. ++.++........+++|+.+..
T Consensus 176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 254 (438)
T PRK09952 176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ-AAAKKRIPVIEALLRHPGAFLK 254 (438)
T ss_pred HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc-ccccccCCHHHHHHHchHHHHH
Confidence 8887776654 257999999987776544444444567765432111000 0000001111124456665544
Q ss_pred HHH-HhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhh
Q 041017 268 CLY-MYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGM 346 (499)
Q Consensus 268 ~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l 346 (499)
... .++............+.|..+ .+|++......+.....+..+++..+.+++.||+++|+.+..+.++..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~y~~~---~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~ 331 (438)
T PRK09952 255 IIALRLCELLTMYIVTAFALNYSTQ---NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 322 121111100000111122222 2677776544444445566677888899999999999988776554443222
Q ss_pred hhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHh-hHHHhHHHHHHHHHH
Q 041017 347 LDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDN-AGVLSSSWGGGLLLH 425 (499)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~-lg~~ig~~l~g~l~~ 425 (499)
........ .+.....+....+.++..+....+..++++|.+|++.|++..|+.....+ +|+.++|.+.+.+.+
T Consensus 332 ~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~ 405 (438)
T PRK09952 332 PFFMALEA------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVT 405 (438)
T ss_pred HHHHHHHc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111000 11111111122233333343344456788999999999999999766654 788999999999987
Q ss_pred HhCCcccCCChhHHHHHHHHhHhHHHHHHHhhcCCC
Q 041017 426 ILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRG 461 (499)
Q Consensus 426 ~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~~lp~~ 461 (499)
..+ ++|... +.+..+..+++++..+.+|++
T Consensus 406 ~~~---~~~~~~---~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 406 YFG---GSWHSV---AIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred hcC---CCchHH---HHHHHHHHHHHHHHHHHcccc
Confidence 543 123222 222333345555555555653
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=232.15 Aligned_cols=359 Identities=13% Similarity=0.007 Sum_probs=226.5
Q ss_pred cchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHH
Q 041017 45 HWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFIL 123 (499)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~ 123 (499)
.++++..+++.|.+ ..++-...+...+ .+++++|+|+++.|++.+.+.+++.+ +|+.|+++||+ +||+.+..
T Consensus 27 ~~~i~~~~~~~~~~-~y~~r~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~r~~l~~ 99 (467)
T PRK09556 27 FMQSYLVVFIGYLT-MYLIRKNFKAAQN-DMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-----NTKQFLPF 99 (467)
T ss_pred HHHHHHHHHHHHHH-HHHHhcChhhhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-----CccchHHH
Confidence 45555666666643 3333234445555 45678999999999999999999987 89999999997 56667766
Q ss_pred HhHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHH
Q 041017 124 AGCLGVFSMLLLSM-----HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGY 198 (499)
Q Consensus 124 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~ 198 (499)
+.++.+++.+.+++ ++++.. ++..|++.|++.+...+...+++.|..+ +++||+++++...+.++|.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~rg~a~gi~~~~~~lG~~l~~ 175 (467)
T PRK09556 100 LLILSAICMLGFGASLGSGSVSLGL--MIALWALSGFFQSTGGPCSYSTITRWTP--RRKRGRFLGFWNISHNLGGAGAG 175 (467)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHhccchHHHHHHHHHcC--ccceeeeEEeeecccchhhhHHH
Confidence 66666655555443 455553 4556788888888777777788888874 36899999999999999999999
Q ss_pred HHHhHhhccc---ChhHHHHHHHHHHHHHHH-HHhcccCCCCCCc---chh------hhhHHH--HH--HHHH-HH-HHc
Q 041017 199 SISGIFVHLI---GPKGVFGLMTIPAGLLIL-VGILLNEPQVPDF---NYK------QVNLKF--LD--AGKA-MW-TTL 259 (499)
Q Consensus 199 ~l~g~l~~~~---gw~~~f~~~a~~~~~~~~-~~~~~~e~~~~~~---~~~------~~~~~~--~~--~~~~-~~-~~l 259 (499)
++..++.+.. +||..|.+.+++.++..+ .+++.++++++.. +.+ +.+++. ++ ..++ .. +.+
T Consensus 176 ~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 255 (467)
T PRK09556 176 GVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVL 255 (467)
T ss_pred HHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHH
Confidence 9887776643 699988887777665533 3444454432210 000 000000 00 0111 12 367
Q ss_pred cCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041017 260 KFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQL 339 (499)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~ 339 (499)
|+|.+|...+..++............+.|.. +.+|+|..+.+.......++.++|.++.|++.||+++|+.+.....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~---~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~ 332 (467)
T PRK09556 256 KNPVIWLLCFANIFLYIVRIGIDNWSPVYAF---QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA 332 (467)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 8888887665554433221111111111222 2378998888888777888899999999999999998887655433
Q ss_pred HHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh-HHHhHHH
Q 041017 340 LSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA-GVLSSSW 418 (499)
Q Consensus 340 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~ig~~ 418 (499)
...+... ...+.. .++.........+.++.......+......|..|++.+|++.|+.+.+.++ |..++|.
T Consensus 333 ~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~ 404 (467)
T PRK09556 333 LALIIFT-LGVYQH-------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKV 404 (467)
T ss_pred HHHHHHH-HHHHHh-------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhh
Confidence 3222111 111111 011111111111222211111122234566999999999999999999997 7799999
Q ss_pred HHHHHHH
Q 041017 419 GGGLLLH 425 (499)
Q Consensus 419 l~g~l~~ 425 (499)
+.|.+.+
T Consensus 405 ~~G~i~~ 411 (467)
T PRK09556 405 GLGMIAD 411 (467)
T ss_pred hHHHHhc
Confidence 9999998
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=219.97 Aligned_cols=336 Identities=13% Similarity=0.052 Sum_probs=225.1
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
......++.. +++|.++.+.+++.+.+.+++.+ +|+.|+++||+ +||+.++++.++..++.+.+++.++.
T Consensus 21 ~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-----grr~vl~~~~~~~~~~~~~~~~~~~~--- 91 (393)
T PRK11195 21 ALLFAAIALL-KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-----PKGRVMFIANGIKLLGCLLMLFGIHP--- 91 (393)
T ss_pred HHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-----CCchhhHHHHHHHHHHHHHHHHHHHH---
Confidence 4444455554 57899999999999999999986 99999999997 67778888888888777776665543
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
...++++|++.+...+...+++.|+.+ +++|++++++.+....+|.++||.++|.+.+. .|+..+.+.+...++.
T Consensus 92 --~~~r~l~G~~~a~~~pa~~a~i~~~~~--~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 92 --LLAYGLVGIGAAAYSPAKYGILTELLP--GEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345678899999999999999999985 36899999999999999999999999999885 3777776655544443
Q ss_pred HHHHhcccCCCCCCcchhhhhHH-HHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHH
Q 041017 225 ILVGILLNEPQVPDFNYKQVNLK-FLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETV 303 (499)
Q Consensus 225 ~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 303 (499)
.+..+.+||++++++++++...+ .++..+.....+++|.++......++............+.|..+. +|+|+.+.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---lg~s~~~~ 243 (393)
T PRK11195 167 ALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA---LGITLNQP 243 (393)
T ss_pred HHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCChhHH
Confidence 44456678765432211111111 111122234556777655443322221111111111111222332 78899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhh
Q 041017 304 GFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWM 383 (499)
Q Consensus 304 g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (499)
|.+.....++.++|+++.+++.+|++.|+.+..+.+. ++..+ .+.. .++.+.......+.++..+....
T Consensus 244 G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~---~~~~-------~~~~~~~~~~~~~~G~~~g~~~~ 312 (393)
T PRK11195 244 AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVL---LMAL-------QHSLLPAYPLLILIGALGGFFVV 312 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHH---HHHH-------HhHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999998888777665432 22111 1111 01112222223344555555566
Q ss_pred HHHHHHHhhCCCCh-hHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCc
Q 041017 384 PLLVLSSRLCPSGI-EGTFFALLMSIDNAGVLSSSWGGGLLLHILKVT 430 (499)
Q Consensus 384 p~~~~~~~~~p~~~-~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~ 430 (499)
|..+...+..|++. +|++.|+.+..++++..++..+.+.+ +..|+.
T Consensus 313 ~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~ 359 (393)
T PRK11195 313 PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVP 359 (393)
T ss_pred hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCC
Confidence 67777777666654 79999999999999999999988855 556654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=218.42 Aligned_cols=320 Identities=16% Similarity=0.074 Sum_probs=222.3
Q ss_pred hhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 041017 75 MKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTAS 153 (499)
Q Consensus 75 l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (499)
+.+++|+++++.|+..+...++..+ +|+.|+++||+ +||+.++.+.++.+++.+.++++++++. +...+++.
T Consensus 46 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~r~l~ 118 (394)
T PRK10213 46 MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-----DRRYVVILFAVLLTLSCLLVSFANSFSL--LLIGRACL 118 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcHHHHHHHHHHHHHHHHHHHHHChHHH--HHHHHHHH
Confidence 4678999999999999999888876 89999999997 6778888999999988888888887764 35677888
Q ss_pred HhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHH-HHhccc
Q 041017 154 SAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL-VGILLN 232 (499)
Q Consensus 154 ~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~-~~~~~~ 232 (499)
|++.+...+...+++.|..+ +++|+++.+....+.++|..++|++++.+.+.+|||+.|++.++..++..+ .....|
T Consensus 119 G~~~g~~~~~~~~~i~~~~~--~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p 196 (394)
T PRK10213 119 GLALGGFWAMSASLTMRLVP--PRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLP 196 (394)
T ss_pred HHhhHHHHHHHHHHHHHHcC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99988888888889898874 468999999999999999999999999999999999999988766655433 334467
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccc-eeEEecCCCCCCCChhHHHHHHHHHH
Q 041017 233 EPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGL-FYWYTDSKAGPSFSQETVGFVLSVGP 311 (499)
Q Consensus 233 e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~ 311 (499)
|+++++++ + .+..++.+|+|.++...+..++............ +++.. .+|+++...+.+.....
T Consensus 197 ~~~~~~~~--~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~g~s~~~~g~~~~~~~ 262 (394)
T PRK10213 197 SLPGEPSH--Q--------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN----LAGFGVDGLTLVLLSFG 262 (394)
T ss_pred CCCccccc--c--------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCChhHHHHHHHHHH
Confidence 75432211 0 0123456778887765444333222111111111 11212 26888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 041017 312 VGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSR 391 (499)
Q Consensus 312 i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~ 391 (499)
++.+++..+.+++.||.+ |+.+..+..+..+..+..... .++.+.......+.++..+....+..+++.+
T Consensus 263 ~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 332 (394)
T PRK10213 263 IASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLW---------GSDKIVATGVAIIWGLTFALVPVGWSTWITR 332 (394)
T ss_pred HHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 899999999999999864 443333333322221111111 0111222223344454444444445567778
Q ss_pred hCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 392 LCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 392 ~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
..| +..++..+......++|..+||.++|.+.+..|
T Consensus 333 ~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g 368 (394)
T PRK10213 333 SLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG 368 (394)
T ss_pred HCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 887 456677888888899999999999999999766
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=218.62 Aligned_cols=321 Identities=14% Similarity=0.066 Sum_probs=199.2
Q ss_pred HhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHH
Q 041017 74 YMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTA 152 (499)
Q Consensus 74 ~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (499)
.+++++|+|+++.|++.+.+.+++.+ +++.|+++||+ +||+.++.+......+.......+++. .++..|++
T Consensus 16 ~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~R~l 88 (368)
T TIGR00903 16 LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-----FKRWFLFGSLATFAAAAGRLLDPFNYE--WLLACQLL 88 (368)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 45678999999999999999999886 88999999997 455655544444433332222225554 35667888
Q ss_pred HHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH-HHHHhcc
Q 041017 153 SSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL-ILVGILL 231 (499)
Q Consensus 153 ~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~-~~~~~~~ 231 (499)
.|+|.+.. ......+.|..+ +++|++++++.+.+..+|.++++++++++.+++|||+.|.+.++++++. ++.++++
T Consensus 89 ~G~g~~~~-~~~~~~~~~~~~--~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 89 AALGQPFL-LNAFAPAASQIR--EERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred HHhHhHHH-HHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888753 444555677764 4789999999999999999999999999999999999999988877665 4456678
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHH
Q 041017 232 NEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGP 311 (499)
Q Consensus 232 ~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 311 (499)
||+++++.+..+. ++..+++++.++||.+|...+..++......... .|...+.++.|+|.. .+.......
T Consensus 166 p~~p~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~wlp~~L~~~g~s~~-~~~~~~l~~ 236 (368)
T TIGR00903 166 PALPFQAAEGFGF----KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLA----IWLEAALRPAGLEDI-AGDAVALAI 236 (368)
T ss_pred CCCCCCCCCCcch----HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCChH-HHHHHHHHH
Confidence 9876554221110 1112345678899998877666555433221111 222221112456654 444443333
Q ss_pred H-HHHHHHHHHHHHhCCCCchhHHHH-HHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHH
Q 041017 312 V-GSILAAILYQNSLKDYPFQDVLFW-AQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLS 389 (499)
Q Consensus 312 i-~~i~g~~l~~~~~~~~~~r~~l~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 389 (499)
+ +.+....+.+++ +|+++|+.... ..++.++.. ..+... ... ...+....+.++.....+....++.
T Consensus 237 ~~g~~g~~~~~d~~-~r~~~r~~~~~~~~~~~a~~~---~~~~~~------~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 305 (368)
T TIGR00903 237 LAGLIGVAVIPDRV-ARAGLRSIYIRAAALLIAAFF---LALAFE------LNR-LALFAFIGIAGLLMLPAYAIIMDWI 305 (368)
T ss_pred HHHHHHHHHhhHHh-hhhhhHHHHHHHHHHHHHHHH---HHHHHc------ccc-HHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3 333333444444 33344444332 222222211 111110 011 1111112222332222333355788
Q ss_pred HhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 041017 390 SRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLL 424 (499)
Q Consensus 390 ~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~ 424 (499)
+|.+|++.||+..|+.++.+++|+.++|.+.+.+.
T Consensus 306 ~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 306 GKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888776
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=224.85 Aligned_cols=345 Identities=14% Similarity=0.001 Sum_probs=227.4
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
......+ ++++++|+|+.+.+++.++..++..+ .|+.|.++||+ +||+.++.+.++..++...++++++++.
T Consensus 12 ~~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~- 84 (399)
T TIGR00893 12 NLSFAAP-MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-----GARKTLAVFIVIWGVFTGLQAFAGAYVS- 84 (399)
T ss_pred hhhHhHH-HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-----CcceeeHHHHHHHHHHHHHHHHHcCHHH-
Confidence 3444444 46778999999999999999999876 88999999997 5666777888888888888888887764
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
+...+++.|++.+...+...+++.|..+ +++|++..++.+...++|.++++.+++.+.+..+||+.|++.++..++.
T Consensus 85 -~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 85 -LYILRVLLGAAEAPFFPGIILIVASWFP--ASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred -HHHHHHHHHHHHHhhhhHHHHHHHHhCC--HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 4566788899988888888889999874 3689999999999999999999999999999999999999887776665
Q ss_pred HH-HHhcccCCCCCCcch-hhhhHH-H-------------HHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeE
Q 041017 225 IL-VGILLNEPQVPDFNY-KQVNLK-F-------------LDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYW 288 (499)
Q Consensus 225 ~~-~~~~~~e~~~~~~~~-~~~~~~-~-------------~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 288 (499)
.+ ..+..||++++++.. +++++. . ++.....++.+++|+++...+..++............+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (399)
T TIGR00893 162 GVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTY 241 (399)
T ss_pred HHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33 344566654432110 000000 0 0011224566778877665554444332211111111122
Q ss_pred EecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 041017 289 YTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQD--VLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVA 366 (499)
Q Consensus 289 ~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~--~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 366 (499)
..+ ..|+++.+.+.+.....++.+++..+.+++.||+++|+ ...... ......+.........+ ..+....
T Consensus 242 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~ 314 (399)
T TIGR00893 242 LVQ---ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK-TAIIAGLVLSLLMFATN---YVNIPYA 314 (399)
T ss_pred HHH---HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH-HHHHHHHHHHHHHHHhc---cchhHHH
Confidence 222 26788888888887778888888888888888888775 111111 11111000000000000 0111122
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 367 LVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 367 ~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
......+..+..+ ...+..++..|..|++.+|+.+|+.+.+.++|..++|.+.|.+.+..|
T Consensus 315 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 315 ALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 2221222222222 334456788999999999999999999999999999999999988654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=219.30 Aligned_cols=363 Identities=16% Similarity=0.100 Sum_probs=224.6
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+...++..+....++.++++++|.|+++.|++.+++.+++.+ +|+.|.++||+ +||+.++.+.++.+++.+.++
T Consensus 25 ~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~~~~~~~~~~~~ 99 (399)
T PRK05122 25 FISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-----GPKKAVVFGLCGCALSGLLYL 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-----CCcchHHHHHHHHHHHHHHHH
Confidence 344444456666777778889999999999999999999886 99999999997 677778888777766655444
Q ss_pred hc---cch---HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 137 MH---EKL---HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 137 ~~---~~~---~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
++ ++. ....++..+++.|++.+...+...+++.|..+ +++|+++.++...+.++|.++|+.+++.+.+.+||
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 177 (399)
T PRK05122 100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVG--ALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGL 177 (399)
T ss_pred HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcC--hhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccH
Confidence 32 221 12234567888999988888777777778763 46899999998899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEe
Q 041017 211 KGVFGLMTIPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYT 290 (499)
Q Consensus 211 ~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 290 (499)
+..+++..+..++..+.....|++++.++ + +.+.++..+.. +......++..............+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (399)
T PRK05122 178 AGLGLLIMLLALLGLLLARPRPAVPPVKG--E--RLPFRRVLGRV---------WPYGMGLALASIGFGTIATFITLYYA 244 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCc--c--chhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887766554433333332333222111 1 11111111111 11111111111100000000111111
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHH
Q 041017 291 DSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVID 370 (499)
Q Consensus 291 ~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 370 (499)
+ .|++. .+.......++.+++.++.+++.||+++|+.+..+.++.++..+. ... .++.+..+..
T Consensus 245 ~----~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~ 308 (399)
T PRK05122 245 A----RGWDG--AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLL-LWL---------APSPWMALIG 308 (399)
T ss_pred H----ccccc--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHH---------hccHHHHHHH
Confidence 1 23332 244445566777888889999999999998877766555543221 111 1111222222
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHH
Q 041017 371 EGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRIT 450 (499)
Q Consensus 371 ~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li 450 (499)
..+.++..+..+........+..|++.+|+++|+++...++|..++|.+.|.+.+..|+. ..+.+.+++.++
T Consensus 309 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~--------~~~~~~~~~~~~ 380 (399)
T PRK05122 309 AALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYP--------SIFLAAALAALL 380 (399)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--------HHHHHHHHHHHH
Confidence 333444444333333456678899999999999999999999999999999999876522 223334444555
Q ss_pred HHHHHhhcCCCCCC
Q 041017 451 PLCVIFLVPRGDPD 464 (499)
Q Consensus 451 ~l~~~~~lp~~~~~ 464 (499)
+++..+++++++++
T Consensus 381 ~~~~~~~~~~~~~~ 394 (399)
T PRK05122 381 GLALTWLLYRRAPR 394 (399)
T ss_pred HHHHHHHhcccccc
Confidence 55555555554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=230.47 Aligned_cols=362 Identities=14% Similarity=0.045 Sum_probs=228.4
Q ss_pred hhccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchH
Q 041017 42 TEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPY 120 (499)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ 120 (499)
+.++|.++.++++.++...+... ..+...+ .+++++|.|.++.++..+.+.+...+ +|+.|+++||+ +||+.
T Consensus 14 ~~~~w~i~~~~~~~~~~~~~~~~-~~~~~~~-~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----g~r~~ 86 (455)
T TIGR00892 14 GGWGWVVLGATFVSIGFSYAFPK-AVTVFFK-ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-----GCRPV 86 (455)
T ss_pred CCcchHHHHHHHHHHHHHHhhhc-chhhhHH-HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-----CchHH
Confidence 34567666666665544343321 2333444 34678999999999999888777654 99999999997 56778
Q ss_pred HHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHH
Q 041017 121 FILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSI 200 (499)
Q Consensus 121 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l 200 (499)
++.+.++..++++.++++++.+.. +...+++.|++.+...++..+++.+.. +++|+++.++.+.+..+|..+++++
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~G~~~~~~~~~~~~~~~~~~---~~~r~~a~g~~~~~~~~g~~~~~~l 162 (455)
T TIGR00892 87 VIAGGLLASLGMILASFSSNVIEL-YLTAGFITGLGLAFNFQPSLTMLGKYF---YRRRPLANGLAMAGSPVFLSTLAPL 162 (455)
T ss_pred HHhhHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcchhhhhHHHHHHHHHH---HhhHHHHHHHHHhcccHHHHHHHHH
Confidence 888888888888888888776643 223346667777655455556666665 3579999999999999999999999
Q ss_pred HhHhhcccChhHHHHHHHHHHHHHHHHH-hcccCCCCC----Cc------ch-hhhh---HHHHHHHHHH--HHHccCcc
Q 041017 201 SGIFVHLIGPKGVFGLMTIPAGLLILVG-ILLNEPQVP----DF------NY-KQVN---LKFLDAGKAM--WTTLKFPL 263 (499)
Q Consensus 201 ~g~l~~~~gw~~~f~~~a~~~~~~~~~~-~~~~e~~~~----~~------~~-~~~~---~~~~~~~~~~--~~~l~~~~ 263 (499)
++.+.+.+|||+.|++.++..++..+.. +..|+++.. .+ +. ..++ ....+..++. .+.+++|.
T Consensus 163 ~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (455)
T TIGR00892 163 NQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRG 242 (455)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCch
Confidence 9999999999999999887766543332 222321110 00 00 0000 0001111111 35678888
Q ss_pred hhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHH--H
Q 041017 264 VWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDY--PFQDVLFWAQ--L 339 (499)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~--~~r~~l~~~~--~ 339 (499)
++......++..............+.. ..|+++.+.+.+.....++.+++.++.+++.||+ +.|+...+.. +
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~----~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 318 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAK----DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL 318 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence 776655444433321111111111112 2688888888888888888888888888888763 3333332221 2
Q ss_pred HHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHH
Q 041017 340 LSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWG 419 (499)
Q Consensus 340 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l 419 (499)
..++.. +.... .++....+....+.++..+....+..+++.+..|++.+|+.+|+++...++|..+||.+
T Consensus 319 ~~~l~~---ll~~~-------~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i 388 (455)
T TIGR00892 319 FNGLTH---LLCAL-------AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL 388 (455)
T ss_pred HHHHHH---HHHHH-------hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc
Confidence 111211 11111 11112222223344444444444456778899999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 041017 420 GGLLLHILK 428 (499)
Q Consensus 420 ~g~l~~~~g 428 (499)
+|.+.+..|
T Consensus 389 ~G~l~~~~g 397 (455)
T TIGR00892 389 AGRLVDATK 397 (455)
T ss_pred eeeeehhcC
Confidence 999988764
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=226.06 Aligned_cols=364 Identities=15% Similarity=0.106 Sum_probs=227.2
Q ss_pred cchhhhhHHhHHhhhccchhhhhhhhHHHHhhhcc--------CCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCC
Q 041017 45 HWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQ--------KVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGY 115 (499)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~--------g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~ 115 (499)
+.+.++.+.++. +.++++.+..+...+. +++++ |.++++.++..+.+.++..+ ++++|+++||+
T Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~----- 82 (479)
T PRK10077 10 IFSITLVATLGG-LLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF----- 82 (479)
T ss_pred HHHHHHHHHHHH-HhcCcccceehHhHHH-HHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 344444444444 7788887666666543 34444 89999999999999999987 88999999997
Q ss_pred CcchHHHHHhHHHHHHHHHHHhc---------cchH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHH
Q 041017 116 RRRPYFILAGCLGVFSMLLLSMH---------EKLH-LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSL 185 (499)
Q Consensus 116 ~Rk~~ll~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~ 185 (499)
+||+.++++..+..++.+.++++ ++.+ ...+++.|++.|++.+...+...+++.|..+ +++|++.+++
T Consensus 83 Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~--~~~rg~~~~~ 160 (479)
T PRK10077 83 GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP--AHIRGKLVSF 160 (479)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC--hhhhhHHHHH
Confidence 67778888888888777766653 2222 2234678899999999998889999999985 4689999999
Q ss_pred HHHHHHHHHHHHHHHHhHhh--------cccChhHHHHHHHHHHHHHHHHHhcccCCCCCC---cchhhhh---------
Q 041017 186 CSLCSAIGALIGYSISGIFV--------HLIGPKGVFGLMTIPAGLLILVGILLNEPQVPD---FNYKQVN--------- 245 (499)
Q Consensus 186 ~~~~~~~G~~lg~~l~g~l~--------~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~---~~~~~~~--------- 245 (499)
.+.+..+|.++++.+++.+. +.+|||++|++.+++.++..+..+++||++++. .+.++..
T Consensus 161 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~ 240 (479)
T PRK10077 161 NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN 240 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence 99999999999887766543 356999999988777766655567789987531 1111100
Q ss_pred HHHHHHHHHHHHHcc-----CcchhhH----HHHHhhhhhc-c-ccccccceeEEecCCCCCCCChhHHHHHHHHHHHHH
Q 041017 246 LKFLDAGKAMWTTLK-----FPLVWRP----CLYMYLSFAV-S-LNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGS 314 (499)
Q Consensus 246 ~~~~~~~~~~~~~l~-----~~~~~~~----~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~ 314 (499)
++.+...++..+.++ .+..+.. ....+..... . ..+. ...++.+...+..|++....+.......++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~ 319 (479)
T PRK10077 241 TLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGIN-VVLYYAPEIFKTLGASTDIALLQTIIVGVIN 319 (479)
T ss_pred hhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChh-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 000111111112221 1111110 0100000000 0 0010 1112222211225666555555555667778
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHH-HHHHHhhC
Q 041017 315 ILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPL-LVLSSRLC 393 (499)
Q Consensus 315 i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-~~~~~~~~ 393 (499)
+++..+.+++.||+++|+++..+.++.++..+........ + .+...... ...+..+.....+.|. .++++|.+
T Consensus 320 ~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~ 393 (479)
T PRK10077 320 LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-Q----APGIVALL-SMLFYVAAFAMSWGPVCWVLLSEIF 393 (479)
T ss_pred HHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-C----cccHHHHH-HHHHHHHHHhccccchhHHHhHhhC
Confidence 8888999999999999999888777766643322111110 1 11111111 1122222222233343 57889999
Q ss_pred CCChhHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 041017 394 PSGIEGTFFALLMSIDNAGVLSSSWGGGLLL 424 (499)
Q Consensus 394 p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~ 424 (499)
|++.||+++|+.+.+.++|..+++.+.+.+.
T Consensus 394 p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 394 PNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999887776555
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=230.72 Aligned_cols=363 Identities=14% Similarity=0.078 Sum_probs=231.0
Q ss_pred cchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHH
Q 041017 45 HWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFIL 123 (499)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~ 123 (499)
+|+.+..+++.+ +.++++........+ .+.+++|+|+.+.+++.+...++..+ .|+.|+++||+ +||+.++.
T Consensus 18 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~ 90 (496)
T PRK03893 18 QWKAFSAAWLGY-LLDGFDFVLITLVLT-EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-----GRRLAMVI 90 (496)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHH
Confidence 333444555555 566666655665555 45678999999999999999998876 88999999997 67778888
Q ss_pred HhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhH
Q 041017 124 AGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGI 203 (499)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~ 203 (499)
+.++.+++.+.+++.++++. +...+++.|++.+...+...+++.|..+ +++|++..++...+.++|..+++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 166 (496)
T PRK03893 91 SIVLFSVGTLACGFAPGYWT--LFIARLVIGMGMAGEYGSSATYVIESWP--KHLRNKASGFLISGFSIGAVVAAQVYSL 166 (496)
T ss_pred HHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877664 3456788888888777778888888874 4679999999999999999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHHHHHhcccCCCCCCcch--hhhhHHHHH--------HHH---------HHHHHcc----
Q 041017 204 FVHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNY--KQVNLKFLD--------AGK---------AMWTTLK---- 260 (499)
Q Consensus 204 l~~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~--------~~~---------~~~~~l~---- 260 (499)
+.+.++||+.|++..++.++.++.....||+++.+++. ++..++..+ ... ..+..+.
T Consensus 167 l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (496)
T PRK03893 167 VVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQ 246 (496)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999875444333333344567654321110 000000000 000 0000000
Q ss_pred -----------------------CcchhhH---HHHHhhhhhccc-cccccceeEEecCCCCCCCChhHHHHHHHHHHHH
Q 041017 261 -----------------------FPLVWRP---CLYMYLSFAVSL-NIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVG 313 (499)
Q Consensus 261 -----------------------~~~~~~~---~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~ 313 (499)
++..+.. .....+....+. ......+.+.. +..|++..+.+.+.....++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~---~~~g~~~~~~g~~~~~~~~~ 323 (496)
T PRK03893 247 NAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLK---TDLGYDPHTVANVLFFSGFG 323 (496)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHH---hhcCCCHHHHHHHHHHHHHH
Confidence 0000000 000000000000 00000111211 23788999999998888999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhC
Q 041017 314 SILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLC 393 (499)
Q Consensus 314 ~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 393 (499)
.++|..+.+++.||+++|+.+..+.++..+..+. ..... ....+.......+.+..+........+++.+.+
T Consensus 324 ~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (496)
T PRK03893 324 AAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIP-VFAIG-------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF 395 (496)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-Hhhcc-------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC
Confidence 9999999999999999998877765544443211 11110 111111111111112222222223346778999
Q ss_pred CCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 394 PSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 394 p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
|++.+|+.+|+.+.+.++|..+||.++|.+.+.+|+
T Consensus 396 ~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~ 431 (496)
T PRK03893 396 DTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL 431 (496)
T ss_pred CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCCh
Confidence 999999999999999999999999999999987763
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-24 Score=219.65 Aligned_cols=348 Identities=11% Similarity=0.022 Sum_probs=214.7
Q ss_pred hHHhHHhhhccchhhhhhhhHHHHhhhcc---CCChhHHHHHHHhhh---chhhh-hhHHhhhccccccCCCCcchHHHH
Q 041017 51 GVVIVYGISQGLGGALARVGTQYYMKDVQ---KVQPSEAQVYAGITS---LPWIV-KPLWGLLTDVLPIFGYRRRPYFIL 123 (499)
Q Consensus 51 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~---g~s~~~~g~~~~~~~---l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~ 123 (499)
.+++++ +.+.+|....+...+ ++.+++ +.+..+.+...+++. ++..+ ++++|+++||+ +||+.++.
T Consensus 26 ~~~~~~-~~~~~d~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-----Grr~~l~~ 98 (432)
T PRK10406 26 GASSGN-LVEWFDFYVYSFCSL-YFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-----GRKKSMLI 98 (432)
T ss_pred HHHHHH-HHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHH
Confidence 334455 567777666666665 556676 456665444444333 33335 77899999997 68888999
Q ss_pred HhHHHHHHHHHHHhccchHH------HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHH
Q 041017 124 AGCLGVFSMLLLSMHEKLHL------VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIG 197 (499)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg 197 (499)
+..+.+++++.+++++++.. ..++..|+++|++.+...+...+++.|..+ +++|++..+..+.+...|.+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p--~~~rg~~~~~~~~~~~~G~~~~ 176 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV--EGRKGFYASFQYVTLIGGQLLA 176 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC--CCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999887632 235678899999998888888899999874 4689999998888888888888
Q ss_pred HHHHhHhh--------cccChhHHHHHHHHHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHH
Q 041017 198 YSISGIFV--------HLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCL 269 (499)
Q Consensus 198 ~~l~g~l~--------~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 269 (499)
+.+...+. +.+|||++|++.+++.++.......+||+++++.+.+ +..+++++.+|+|+.+...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~ 249 (432)
T PRK10406 177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRAL-------KEAGSLKGLWRNRRAFIMVL 249 (432)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhh-------cccccHHHHHhhHHHHHHHH
Confidence 77654443 2579999999877776655444555677654321100 01112344566776554433
Q ss_pred HHhhh-hhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhh
Q 041017 270 YMYLS-FAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLD 348 (499)
Q Consensus 270 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~ 348 (499)
..++. ...........+.+.. +..|++..+.+....+..++..++..+.+++.||+++|+.+....++.++.....
T Consensus 250 ~~~~~~~~~~~~~~~~lp~~l~---~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~ 326 (432)
T PRK10406 250 GFTAAGSLCFYTFTTYMQKYLV---NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPI 326 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 22221 1111111111111111 2267888777777666666667777888999999999987766554433322111
Q ss_pred hhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh-HHHhHHHHHHHH
Q 041017 349 LLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA-GVLSSSWGGGLL 423 (499)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~ig~~l~g~l 423 (499)
...... .......+....+..+..+....+...+.+|.+|++.|++.+|+.+.+.+. .+..+|.+.+.+
T Consensus 327 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l 396 (432)
T PRK10406 327 LSALQN------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL 396 (432)
T ss_pred HHHHHc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence 111110 111111111111111222222223456788999999999999999988775 344577777755
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=223.16 Aligned_cols=369 Identities=9% Similarity=-0.013 Sum_probs=217.6
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc----chH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE----KLH 142 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~----~~~ 142 (499)
....+ +++++ |+|+++.|+..++..+++.+ +|+.|+++||+ +||+.++++.++.+++.+.+++.+ +..
T Consensus 49 ~~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-----g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 121 (452)
T PRK11273 49 ALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAGLILAAAVMLFMGFVPWATSSIA 121 (452)
T ss_pred HHhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----CCchhHHHHHHHHHHHHHHHHhhhcccccHH
Confidence 34444 56667 99999999999999999887 99999999997 567788888888888887777653 332
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHH-HHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 143 LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGAL-IGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 143 ~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~-lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
..+..+++.+++.+...+.....+.|..+ +++|++.+++.+.+.++|.. .+++++..+....+||+.|++.+++.
T Consensus 122 --~~~~~~~l~gi~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~ 197 (452)
T PRK11273 122 --VMFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAA 197 (452)
T ss_pred --HHHHHHHHHHHHHhccchHHHHHHHHhCC--hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23455677777777666656667777663 46799999999999998874 45544433333459999999888776
Q ss_pred HHH-HHHHhcccCCCCCCcc--hhhh--------hHH-H-HHHHHHH--HHHccCcchhhHHHHHhhhhhccccccccce
Q 041017 222 GLL-ILVGILLNEPQVPDFN--YKQV--------NLK-F-LDAGKAM--WTTLKFPLVWRPCLYMYLSFAVSLNIHEGLF 286 (499)
Q Consensus 222 ~~~-~~~~~~~~e~~~~~~~--~~~~--------~~~-~-~~~~~~~--~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 286 (499)
++. ++..+++||+++.... .++. +++ . +...++. ...+|+|.+|...+..++............+
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P 277 (452)
T PRK11273 198 ILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSP 277 (452)
T ss_pred HHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 4455667776543110 0000 000 0 0011121 2356788877765554433222111111111
Q ss_pred eEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHH-HHHHHHHHhhhhhhhhhhcccccCCCc
Q 041017 287 YWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDY--PFQDVLFW-AQLLSGLSGMLDLLLVLRLNLKFGIPD 363 (499)
Q Consensus 287 ~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~--~~r~~l~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~ 363 (499)
.+..+ ..|++....+.+.....++.+++.++.+++.||+ ++|+...+ ...+..+.. ..+..... ..
T Consensus 278 ~~l~~---~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~-~~~~~~~~-------~~ 346 (452)
T PRK11273 278 TYLKE---VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT-IVYWLNPA-------GN 346 (452)
T ss_pred HHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH-HHHHHhcc-------cC
Confidence 22222 2678877778777777778888888888888887 33432221 111111111 11111000 11
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHh-HHHHHHHHHHHhCCcccCCChhHHHHH
Q 041017 364 FVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLS-SSWGGGLLLHILKVTRTQFHNLWLAIL 442 (499)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~i-g~~l~g~l~~~~g~~~~~~~~~~~~~~ 442 (499)
...........+............+..|.+|++.+|+++|+.+.+.++|+.+ +|.++|.+.+..|+. .. +.
T Consensus 347 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~-----~~---f~ 418 (452)
T PRK11273 347 PTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD-----GG---FM 418 (452)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcch-----HH---HH
Confidence 1111111111111111111122345678999999999999999999998765 799999999987632 22 22
Q ss_pred HHHhHhHHHHHH--HhhcCCCCCCCC
Q 041017 443 IRNILRITPLCV--IFLVPRGDPDTS 466 (499)
Q Consensus 443 i~~~~~li~l~~--~~~lp~~~~~~~ 466 (499)
++.+.+++++++ .+..+|+|++++
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 419 VMIGGSILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHH
Confidence 333333443333 235566666554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-24 Score=215.35 Aligned_cols=332 Identities=11% Similarity=0.046 Sum_probs=218.9
Q ss_pred cchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc
Q 041017 61 GLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE 139 (499)
Q Consensus 61 g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~ 139 (499)
++.........+ .+++++|.|.++.|+..+...++..+ +|++|+++||+ +||+.+..+..+.+++.+.+++++
T Consensus 16 ~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~l~~~~~ 89 (382)
T PRK10091 16 GMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-----SLKHILLFLVALCVIGNAMFTLSS 89 (382)
T ss_pred HhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-----ccHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333444554 45678999999999999999999887 89999999996 688888999999999999999998
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHH
Q 041017 140 KLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTI 219 (499)
Q Consensus 140 ~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~ 219 (499)
+++. +.+.+++.|++.+...+...+++.|..+ +++|++.++....+..+|..+++++++.+.+..+||++|++.++
T Consensus 90 ~~~~--l~~~r~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~ 165 (382)
T PRK10091 90 SYLM--LAIGRLVSGFPHGAFFGVGAIVLSKIIK--PGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV 165 (382)
T ss_pred cHHH--HHHHHHHHHhhhHHHHHHHHHHHHHhCC--hHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence 8764 3456788888877766666667777753 35788899999999999999999999999998999999999887
Q ss_pred HHHHHH-HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCC
Q 041017 220 PAGLLI-LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSF 298 (499)
Q Consensus 220 ~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 298 (499)
..++.. ...+++||.+++.+. + .++ .++.+|+++.+......++..............+..+ ..|+
T Consensus 166 ~~~~~~~~~~~~lp~~~~~~~~--~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~ 232 (382)
T PRK10091 166 FNIAVLASIYFWVPDIRDEAKG--G----LRE----QFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMF---ISGF 232 (382)
T ss_pred HHHHHHHHHHHhCCCCCccccc--C----HHH----HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCC
Confidence 766553 344567876432211 0 111 1245667766654433332211111101101111122 2688
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHH
Q 041017 299 SQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVG 378 (499)
Q Consensus 299 s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (499)
++.+.+.+.....++.+++.++.+++.||+++|+.+..+..+.++..+..... . +..........+.....
T Consensus 233 s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-~--------~~~~~~~~~~~~~~~g~ 303 (382)
T PRK10091 233 SETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-G--------GMKTASLIFAFICCAGL 303 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH-H--------hhHHHHHHHHHHHHHHH
Confidence 98888988888889999999999999999999998877766555533211111 1 11111111111112211
Q ss_pred HhhhhHHHH-HHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHH
Q 041017 379 QLKWMPLLV-LSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 379 ~~~~~p~~~-~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~ 426 (499)
.....|... ...+..|++..+.. ..+...++|..+||.++|.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 304 FALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred HhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc
Confidence 112233332 33343444455543 34677889999999999999986
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=225.75 Aligned_cols=363 Identities=14% Similarity=0.114 Sum_probs=222.9
Q ss_pred hhccchhhhhhhhHHHHhhhccCCC--------hhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQ--------PSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLG 128 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s--------~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~ 128 (499)
+..+++........+. ...+++.+ ..+.++..+++.++..+ +|++|+++||+ +||+.++.+.++.
T Consensus 38 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~~~~~~~~~ 111 (481)
T TIGR00879 38 LMFGYDTGVIGGALAL-PAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-----GRKKSLLIIALLF 111 (481)
T ss_pred Hhcccccchhhhhhhc-HHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-----hhHHHHHHHHHHH
Confidence 4555555444444442 23445555 89999999999999877 89999999997 6778888888888
Q ss_pred HHHHHHHHhccch-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHH---hHh
Q 041017 129 VFSMLLLSMHEKL-HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSIS---GIF 204 (499)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~---g~l 204 (499)
.++.+++.+.++. ....++..+++.|+|.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.++ +..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 189 (481)
T TIGR00879 112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAP--KALRGALTSLYQLAITFGILVAYGFGSGKVSL 189 (481)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCC--hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8887777554432 22234567888999998888888889999874 46899999999999999999999998 666
Q ss_pred hcccChhHHHHHHHHHHHHHHHHHhcccCCCCCC---cchhhhhH-------------HHHH---H--------------
Q 041017 205 VHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPD---FNYKQVNL-------------KFLD---A-------------- 251 (499)
Q Consensus 205 ~~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~---~~~~~~~~-------------~~~~---~-------------- 251 (499)
.+..+||+.|++.++..++..+..+++||+++.. ++.++..+ ...+ .
T Consensus 190 ~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
T TIGR00879 190 NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP 269 (481)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccc
Confidence 6778999999996665555455556778865321 10000000 0000 0
Q ss_pred -HHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 041017 252 -GKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPF 330 (499)
Q Consensus 252 -~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~ 330 (499)
.+..++.+++ ..+......++..+..........++.....+..|++....+.......++.+++.++.+++.||+++
T Consensus 270 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 348 (481)
T TIGR00879 270 SWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGR 348 (481)
T ss_pred cHHHHHhcCch-hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0011111111 01111111111111100001111122222222367777777777777788888999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHH-HHHHHhhCCCChhHHHHHHHHHHH
Q 041017 331 QDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPL-LVLSSRLCPSGIEGTFFALLMSID 409 (499)
Q Consensus 331 r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-~~~~~~~~p~~~~g~~~gl~~~~~ 409 (499)
|+.+..+.++.++..+.....................+....+.....+....|. ..+..|..|++.+++.+|+.+.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 428 (481)
T TIGR00879 349 RPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAAN 428 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHH
Confidence 9988777665555432211100000000000001111111122222223333333 356689999999999999999999
Q ss_pred hhHHHhHHHHHHHHHHHhCC
Q 041017 410 NAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 410 ~lg~~ig~~l~g~l~~~~g~ 429 (499)
++|..++|.+.+.+.+..|+
T Consensus 429 ~lg~~i~~~~~~~~~~~~~~ 448 (481)
T TIGR00879 429 WLANFIVGFLFPTMLESIGV 448 (481)
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999887653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-24 Score=217.16 Aligned_cols=324 Identities=14% Similarity=0.088 Sum_probs=219.7
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAV 147 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (499)
...| .+++++|+|.++.|+..+.+.+++.+ +|+.|+++||+ +||+.++.+..+.+++.+.+++++++.. ++
T Consensus 30 ~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-----G~r~~l~~~~~l~~~~~~~~~~a~~~~~--ll 101 (393)
T PRK09705 30 PLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-----SERRSVAISLLLIAVGALMRELYPQSAL--LL 101 (393)
T ss_pred hhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHCcchHH--HH
Confidence 3443 56789999999999999999999887 89999999997 6888999999999999999999999874 35
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc-ChhHHHHHHHHHHHHHHH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI-GPKGVFGLMTIPAGLLIL 226 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~-gw~~~f~~~a~~~~~~~~ 226 (499)
..|++.|++.+...+...+++.+.. |++|+++++....+.+.|..+|+.+++++.++. +||+.+.+.++..++.+.
T Consensus 102 ~~r~l~Gig~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~ 178 (393)
T PRK09705 102 SSALLGGVGIGIIQAVMPSVIKRRF---QQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF 178 (393)
T ss_pred HHHHHHHhHHHHHhhhhhHHHHHHc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 6788999999887777777776654 367999999999999999999999999888875 899988766655443333
Q ss_pred HHhcc-cCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHH
Q 041017 227 VGILL-NEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGF 305 (499)
Q Consensus 227 ~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 305 (499)
..+.. +++++.+++++ . ...+.+++|+.|......++....+.......+.+..+ .|++..+.|.
T Consensus 179 ~~~~~~~~~~~~~~~~~---~-------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~----~g~s~~~ag~ 244 (393)
T PRK09705 179 AWWWQSAREVASSHKTT---T-------TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE----IGASAQYSGS 244 (393)
T ss_pred HHHHHhcCCCccccCCC---c-------CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCChhhhhH
Confidence 32222 22221111100 0 01234556666655443333222111111111122222 6788888898
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHH
Q 041017 306 VLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPL 385 (499)
Q Consensus 306 ~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ 385 (499)
......++.++|..+.+++.||.++|+....+..+.++..+. ..... +...... ..+.++..+......
T Consensus 245 ~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~-~~~~~--------~~~~~~~--~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 245 LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCG-FIWLP--------LQLPVLW--AMVCGLGLGGAFPLC 313 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHHcc--------chHHHHH--HHHHHHhccchHHHH
Confidence 888888999999999999999999998877765554443221 11111 0111111 111222222222223
Q ss_pred HHHHHhhCC-CChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 386 LVLSSRLCP-SGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 386 ~~~~~~~~p-~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
.....+..+ ++.+|+.+|+.+.+.+++..++|.+.|++.+..|
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g 357 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG 357 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455554 5688999999999999999999999999999876
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-24 Score=217.97 Aligned_cols=329 Identities=14% Similarity=0.065 Sum_probs=215.5
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
....+.++++++|.|+.++|+..+...++..+ +|+.|+++||+ +||+.++.+..+..++++.+.+.++++. +
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-----g~k~~l~~~~~~~~~~~~~~~~~~~~~~--l 102 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-----GAKPMIVTGMLMRAAGFATMAIAHEPWL--L 102 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-----CchHHHHHHHHHHHHHHHHHHHhccHHH--H
Confidence 33444566778999999999999998888765 89999999997 6788899999999998888888777653 3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHH-
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLI- 225 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~- 225 (499)
...+++.+++.+...+...+++.|..+ +++|+++.++.+...++|..+||.+++.+. .+|||+.|++.++..++..
T Consensus 103 ~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i 179 (400)
T PRK11646 103 WLSCILSGLGGTLFDPPRTALVIKLIR--PHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAA 179 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 456677888887777777888888874 468999999999999999999999999998 6799999998777665543
Q ss_pred HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHH
Q 041017 226 LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGF 305 (499)
Q Consensus 226 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 305 (499)
+..++.||++..+.+ ++.+ +.+.+.+++|+++...+..+.............+++..+ .+.++...+.
T Consensus 180 ~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~g~ 247 (400)
T PRK11646 180 FNAWLLPAYKLSTVR-----TPVR---EGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVND----IAGSPSAVKW 247 (400)
T ss_pred HHHHhCCcccccccc-----hhhH---HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHh----hcCCchHHHH
Confidence 334455654321111 1111 233456778876554333222111110111111222222 2335667777
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhH
Q 041017 306 VLSVGPVGSILAAILYQNSL-KDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMP 384 (499)
Q Consensus 306 ~~~~~~i~~i~g~~l~~~~~-~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 384 (499)
+.....++.+.+....+++. ||++.++.+..+.++.++..+ .+... ++.........+.....+....+
T Consensus 248 l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~l~~~---------~~~~~~~~~~~l~~~g~~~~~p~ 317 (400)
T PRK11646 248 MYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMF-PIGMV---------SNLQQLFTLICLFYIGSIIAEPA 317 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH-HHHHh---------hhHHHHHHHHHHHHHHHHHHHcc
Confidence 76665555554444455555 455656555555444443321 11111 11111111222223333333334
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 385 LLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 385 ~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
..++..+..|++.+|+++|+.+...++|..+||.++|.+.+..+
T Consensus 318 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 318 RETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 46788899999999999999999999999999999999998753
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=218.91 Aligned_cols=389 Identities=13% Similarity=0.106 Sum_probs=230.5
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc-----chH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE-----KLH 142 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~-----~~~ 142 (499)
..+++|+++.+|+++.++|.+.++..+..++ +|++|.++||++.+.+||||+++++.+...+....+...+ +..
T Consensus 29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (448)
T PRK09848 29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK 108 (448)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence 3344688889999999999999999888876 9999999999976655889998887776655444432222 111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHH-----HHHHHHHHHHhHhhccc--ChhHHHH
Q 041017 143 LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSA-----IGALIGYSISGIFVHLI--GPKGVFG 215 (499)
Q Consensus 143 ~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~-----~G~~lg~~l~g~l~~~~--gw~~~f~ 215 (499)
...+.....+.+++.+...++..++..|+++ ++++|.+..+....+.+ +|..++|.+++..-... +|.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~ 187 (448)
T PRK09848 109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQ-QPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTI 187 (448)
T ss_pred HHHHHHHHHHHHHHHHHhcccHhhhhhhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence 1122333455677788888888888888875 35678887776655433 44444554443321111 1211112
Q ss_pred HHHHHHHHH-HHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCC
Q 041017 216 LMTIPAGLL-ILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKA 294 (499)
Q Consensus 216 ~~a~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (499)
+.++...+. .+.....||+++.+.+ + ...+ +.+++.+|||.++...+..++............++|..+.
T Consensus 188 ~~~v~~~~~~~~~~~~~~e~~~~~~~--~--~~~~---~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 258 (448)
T PRK09848 188 VLAIAGMVLYFICFKSTRENVVRIVA--Q--PSLK---ISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV-- 258 (448)
T ss_pred HHHHHHHHHHHHHHcCcEeccCCCcc--C--CCHH---HHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee--
Confidence 223333222 2233446776433211 1 1122 2345678899876665544443322212222234555544
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
+|.++...++......++.+++.++.+++.+|+++|+.+.++.++.++..+.. .+.. ..+.+.......+.
T Consensus 259 -~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~-~~~~-------~~~~~~~~~~~~l~ 329 (448)
T PRK09848 259 -LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLF-FWVS-------VWSLPVALVALAIA 329 (448)
T ss_pred -cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHcC-------chhHHHHHHHHHHH
Confidence 56665544444445567788899999999999999999888776655543221 1111 11112222222333
Q ss_pred HHHHHhhhhHHHHHHHhhCCC-------ChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCC--Ch----hHHH-
Q 041017 375 RMVGQLKWMPLLVLSSRLCPS-------GIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQF--HN----LWLA- 440 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~-------~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~--~~----~~~~- 440 (499)
++..+....+..++.++..|. +.+|..+|+.+.+.++|..+|+.+.|.+.+..|+....- ++ +...
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~~~~~~~i~~~~ 409 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRTSI 409 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHH
Confidence 444444444455666676654 467999999999999999999999999999888753211 11 1111
Q ss_pred HHHHHhHhHHHHHHHhhcCCCCCCCCCCchhhhhhh
Q 041017 441 ILIRNILRITPLCVIFLVPRGDPDTSFLPAELESKE 476 (499)
Q Consensus 441 ~~i~~~~~li~l~~~~~lp~~~~~~~~l~~~~~~~~ 476 (499)
..+.+++.+++++++++.|.++++.+++.+|+++++
T Consensus 410 ~~~p~~~~~~~~~~~~~y~l~~~~~~~~~~~l~~~~ 445 (448)
T PRK09848 410 ALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRK 445 (448)
T ss_pred HHHHHHHHHHHHHHHHHeeCCHHHHHHHHHHHHHhh
Confidence 122333345555556678887776666777766553
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=215.30 Aligned_cols=365 Identities=12% Similarity=0.062 Sum_probs=217.1
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhc-hhhhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSL-PWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l-~~~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+..++..++.....+.++++++|+|++++|+..+...+ +..++|++|.++||+ | +||.+++.+.+...++...++
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~---g-~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKR---G-DRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-chhHHHHHHHHHHHHHHHHHH
Confidence 34444445556666778888999999999999776544 666777766669997 2 566666666666666666677
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHH
Q 041017 137 MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216 (499)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~ 216 (499)
++++++.. ++..+++.+.+. ...+..+++..|..+++.+..+...+..+.+.++|.++||++++.+.+++|||..|++
T Consensus 101 ~~~~~~~l-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~ 178 (393)
T PRK15011 101 WNRNYFVL-LFVGVFLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLS 178 (393)
T ss_pred HhhHHHHH-HHHHHHHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHH
Confidence 77776542 223333334433 4455566666665432111223445788888999999999999999999999999998
Q ss_pred HHHHHHHHH-HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcc-hhhHHHHHhhhhhccccccccceeEEecCCC
Q 041017 217 MTIPAGLLI-LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPL-VWRPCLYMYLSFAVSLNIHEGLFYWYTDSKA 294 (499)
Q Consensus 217 ~a~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (499)
.++..++.. ...+++||+++++++.++ + .+. ..++++ .+......++.......+....+.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~--- 245 (393)
T PRK15011 179 AAVAFIVCGVMVWLFLPSMRKELPLATG---T----LEA---PRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIIN--- 245 (393)
T ss_pred HHHHHHHHHHHHHhhcCccCCCCccccc---c----ccc---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 887666553 345567876543221110 0 000 011222 2222111111111110010111122222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
.+|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+.+...+.. ...... ++....+....+.
T Consensus 246 ~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~l~~~~l~ 315 (393)
T PRK15011 246 ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFY-AGMLMA---------HSPAILLGLQLLN 315 (393)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-HHHHHH---------hhHHHHHHHHHHH
Confidence 268888888887776667778889999999999999987766544333321 111110 1111111112222
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHH
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCV 454 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~ 454 (499)
.+..+........+..|..|+ .+|+++++++...++|..++|.++|.+.+.+|+. ..+.+..+..++.+..
T Consensus 316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~--------~~~~~~~~~~~~~~~~ 386 (393)
T PRK15011 316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYH--------AVFWFALVMIIATLFC 386 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHH
Confidence 222222222234556788875 5899999999999999999999999999876532 2334445555666666
Q ss_pred HhhcCC
Q 041017 455 IFLVPR 460 (499)
Q Consensus 455 ~~~lp~ 460 (499)
++..||
T Consensus 387 ~~~~~~ 392 (393)
T PRK15011 387 LLRIKD 392 (393)
T ss_pred HHhhcC
Confidence 666665
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=228.46 Aligned_cols=355 Identities=12% Similarity=0.034 Sum_probs=246.8
Q ss_pred HHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHH
Q 041017 52 VVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVF 130 (499)
Q Consensus 52 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~ 130 (499)
+++.+ +...++.+......+. +.+++|.++++.+++.+.+.++..+ .|+.|+++||+ +||+.++.+.++..+
T Consensus 7 ~~~~~-~~~~~~~~~~~~~~p~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 7 LMLGT-FMAVLDSTIVNVAIPT-IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-----GTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHH-HHHHHHHHHHHHHHHH-HHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-----CcHHHHHHHHHHHHH
Confidence 33444 5666776677777764 4668999999999999999999876 88999999997 677888889999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 131 SMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
+.+.++++++++. ++..+++.|++.+...+...+++.|..+ +++|++..++...+..+|..+|+.+++++.++++|
T Consensus 80 ~~~~~~~~~~~~~--l~~~~~~~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 155 (485)
T TIGR00711 80 GSLLCGVAPNLEL--MIIFRVIQGFGGGPLIPLSFSTLLNIYP--PEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW 155 (485)
T ss_pred HHHHHhCcCCHHH--HHHHHHHHHhhhhhHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence 9999998888764 3567788999988888888899999874 46899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH-HHHhcccCCCCCCcchhhh---------------------------hHHHH-------------
Q 041017 211 KGVFGLMTIPAGLLI-LVGILLNEPQVPDFNYKQV---------------------------NLKFL------------- 249 (499)
Q Consensus 211 ~~~f~~~a~~~~~~~-~~~~~~~e~~~~~~~~~~~---------------------------~~~~~------------- 249 (499)
|+.|++.+...++.. +..+..||+++...++.+. .....
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (485)
T TIGR00711 156 RWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAF 235 (485)
T ss_pred eehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 999998776665553 3345566644322111000 00000
Q ss_pred --HHHH-----HHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 041017 250 --DAGK-----AMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQ 322 (499)
Q Consensus 250 --~~~~-----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~ 322 (499)
.+.+ .-.+.+++|+++...+..++............+.|..+. .|+++.+.|.......++.+++.++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g 312 (485)
T TIGR00711 236 VVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV---LGYTALQAGLHILPVGLAPMLSSPIAG 312 (485)
T ss_pred HHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 002456677665554444433222111111112232332 788999999988888899999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHH
Q 041017 323 NSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFF 402 (499)
Q Consensus 323 ~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~ 402 (499)
++.||+++|+.+..+..+.++...... ... +. ............+.++..+....|......+..|++.+|++.
T Consensus 313 ~l~~r~~~~~~~~~g~~~~~~~~~~~~-~~~--~~---~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~ 386 (485)
T TIGR00711 313 RMGDKIDPRKLVTIGLILYAVGFYWRA-FTF--TP---DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGS 386 (485)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHh-ccC--CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHH
Confidence 999999999988777665555332111 000 00 011111222233445555555556666677888999999999
Q ss_pred HHHHHHHhhHHHhHHHHHHHHHHH
Q 041017 403 ALLMSIDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 403 gl~~~~~~lg~~ig~~l~g~l~~~ 426 (499)
|+.+.++++|..+|+.+.|.+.+.
T Consensus 387 ~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 387 SLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=214.89 Aligned_cols=344 Identities=12% Similarity=0.023 Sum_probs=225.2
Q ss_pred chhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccc
Q 041017 62 LGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEK 140 (499)
Q Consensus 62 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~ 140 (499)
+..+......+. +++++|.|+.+.++..+.+.++..+ +|+.|+++||+ +||+.++.+..+..++...++++++
T Consensus 27 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~ 100 (406)
T PRK15402 27 IANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-----GRRPVMLAGVAFFILTCLAILLAQS 100 (406)
T ss_pred hhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHHcc
Confidence 333333444444 4568999999999999999999876 88999999997 6777888888888888888888877
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHH
Q 041017 141 LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIP 220 (499)
Q Consensus 141 ~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~ 220 (499)
++. +...+++.|++.+...+...+.+.|..+ +++|++..+.......+|..++|.+++.+.+..+||+.|++.++.
T Consensus 101 ~~~--l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~ 176 (406)
T PRK15402 101 IEQ--FTLLRFLQGIGLCFIGAVGYAAIQESFE--EADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAAL 176 (406)
T ss_pred HHH--HHHHHHHHHhHhhhHHHHHHHHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 664 3456777888877766667777888764 356778888888888889999999999999989999999988777
Q ss_pred HHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCC
Q 041017 221 AGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299 (499)
Q Consensus 221 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 299 (499)
.++..+ ..+..||++++.+++. +.++..+...+.+++|+++...+..++............+++..+ .+|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g~~ 249 (406)
T PRK15402 177 AALSFFGLWRAMPETAGRVGEKL----SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILIS---GEQLS 249 (406)
T ss_pred HHHHHHHHHHhCCCCCccccccc----cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HhCCC
Confidence 665533 3455677654322110 111222334567788887765544433222111111111122222 26788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHH
Q 041017 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQ 379 (499)
Q Consensus 300 ~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (499)
+.+.+.......++.++|..+.+++.||+++|+.+..+.+..++..+. ........ ............+.++..+
T Consensus 250 ~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~-~~~~~~~~----~~~~~~~~~~~~~~g~g~~ 324 (406)
T PRK15402 250 SYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLL-AALATVIS----SHAYLWLTAGLSLYAFGIG 324 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHHHHcc----cccHHHHHHHHHHHHHHHH
Confidence 888888777667788899999999999999999887765554443221 11111000 0111111222233333333
Q ss_pred hhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 380 LKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 380 ~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
....+..... ...+++.+|++.+..+...++|..+|+.+++.+.+..+
T Consensus 325 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 325 LANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 3332333333 23445889999999999999999999998888776543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=212.75 Aligned_cols=340 Identities=17% Similarity=0.161 Sum_probs=226.4
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+..++.........+ .+++++|.|+++.++..+.+.++..+ +|+.|+++||+ +||+.+..+.++..++.+.++
T Consensus 15 ~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 15 ILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-----GRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHHHHHHHHHHHHH
Confidence 334444444444554 45678999999999999999999876 89999999997 677888888888888888888
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHH
Q 041017 137 MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216 (499)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~ 216 (499)
+.++.+. +...+++.+++.+...+..++++.|..+ +++|++..+..+....+|..+++.+++.+.+..+||++|++
T Consensus 89 ~~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 89 LSNNIET--LLVLRFVQAFGASAGSVISQALVRDIYP--GEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred HHccHHH--HHHHHHHHHcchhHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 8887664 3456788899988888888999999874 46899999999999999999999999999998999999998
Q ss_pred HHHHHHHHH-HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCC
Q 041017 217 MTIPAGLLI-LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAG 295 (499)
Q Consensus 217 ~a~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (499)
.++..++.. +..+..||+++.+++.+ .++..+...+.+|+|+++...+...+............+++..+ .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 236 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPYEARIQ-----ISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYID---I 236 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccCC-----HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHH---H
Confidence 777666553 34455677654332211 11223344566788887665543332221111111111122222 2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
.|+++.+.+.+.....++.+++..+.+++.||+++|+.+..+.....+..+.... .... ..+..........+.+
T Consensus 237 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~g 311 (385)
T TIGR00710 237 MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI-TAIL----GLGSWAMIIGPMMFVG 311 (385)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHh----ccchHHHHHHHHHHHH
Confidence 6888888898888888999999999999999999998887765555543322111 1100 0111111122222333
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHH
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGG 421 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g 421 (499)
+..+...........|..| +.+|++.++.+.+...++.+.+.+.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333455566666 57899999999888765444444444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=226.10 Aligned_cols=400 Identities=10% Similarity=0.029 Sum_probs=240.0
Q ss_pred cchhhhhHHhHHhhhccchhhhhhhhHHHHhhhc-----cCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcc
Q 041017 45 HWSFVLGVVIVYGISQGLGGALARVGTQYYMKDV-----QKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRR 118 (499)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~-----~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk 118 (499)
++..+..+.+.. +.+|++....+...+. ++++ .+.+..+.+++.+...++..+ +++.|+++||+ +||
T Consensus 14 ~~~~~~~~~~~~-~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-----Grr 86 (502)
T TIGR00887 14 HFRAIVIAGVGF-FTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-----GRK 86 (502)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccH
Confidence 334444555555 6788887666666653 3332 345667788888989998887 88999999997 688
Q ss_pred hHHHHHhHHHHHHHHHHHhccch----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHH
Q 041017 119 PYFILAGCLGVFSMLLLSMHEKL----HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGA 194 (499)
Q Consensus 119 ~~ll~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~ 194 (499)
+.+.++.++..++.++++++++. ....++..|++.|++.+...+....++.|..+ +++|++.+++.+....+|.
T Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p--~~~Rg~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 87 RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFAT--KKWRGAMMAAVFAMQGFGI 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHHHH
Confidence 88888888888888777776541 12245678889999999888888899999984 4789999999999999999
Q ss_pred HHHHHHHhHhhc-----------------------ccChhHHHHHHHHHHHHHHHHHhcccCCCCCC---cchhh-hhH-
Q 041017 195 LIGYSISGIFVH-----------------------LIGPKGVFGLMTIPAGLLILVGILLNEPQVPD---FNYKQ-VNL- 246 (499)
Q Consensus 195 ~lg~~l~g~l~~-----------------------~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~---~~~~~-~~~- 246 (499)
++++.++..+.. .++||++|.+.+++.++..+..+++||+|++. ++.++ ..+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~ 244 (502)
T TIGR00887 165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD 244 (502)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence 999988765432 24799999888887776666677899998752 11100 000
Q ss_pred --------------HH---H---H-HHHHHHHHccC---cchhhHHHH----HhhhhhccccccccceeEEecCCCCCCC
Q 041017 247 --------------KF---L---D-AGKAMWTTLKF---PLVWRPCLY----MYLSFAVSLNIHEGLFYWYTDSKAGPSF 298 (499)
Q Consensus 247 --------------~~---~---~-~~~~~~~~l~~---~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 298 (499)
+. + + ....+++.+++ ++.++..+. .+...+.+ .+ ...|.....+..|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---y~-~~~~~p~i~~~~G~ 320 (502)
T TIGR00887 245 MSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAF---YG-VNLNQKVILSAIGY 320 (502)
T ss_pred HHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---Hc-cccccHHHHHHHcC
Confidence 00 0 0 00123334432 222222111 11111110 01 11111111011344
Q ss_pred ChhHH-----------HH-HHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 041017 299 SQETV-----------GF-VLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVA 366 (499)
Q Consensus 299 s~~~~-----------g~-~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 366 (499)
+.... .. ...+..++.+++.++.+++.||+|+|+++..+.++.+++...........+ .....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~-----~~~~~ 395 (502)
T TIGR00887 321 SPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS-----THGFL 395 (502)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc-----hhHHH
Confidence 32210 11 123445567778888899999999999887776665554322111111000 00111
Q ss_pred HHHHHHHHHHHHHhhhhH-HHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCccc---CCChhHHHHH
Q 041017 367 LVIDEGISRMVGQLKWMP-LLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRT---QFHNLWLAIL 442 (499)
Q Consensus 367 ~~~~~~l~~~~~~~~~~p-~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~---~~~~~~~~~~ 442 (499)
.. ..+..+.......| ...+.+|+.|++.|++++|+.+.+.++|..++|.+.+.+.+..+...+ +. .....+.
T Consensus 396 ~~--~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~ 472 (502)
T TIGR00887 396 AI--YVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI-WMGHVLE 472 (502)
T ss_pred HH--HHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc-cchHHHH
Confidence 11 11111122222223 345678999999999999999999999999999999998874321100 11 1122334
Q ss_pred HHHhHhHHHHHHHhhcCCCCCCC
Q 041017 443 IRNILRITPLCVIFLVPRGDPDT 465 (499)
Q Consensus 443 i~~~~~li~l~~~~~lp~~~~~~ 465 (499)
+.++..+++.++.+++||++.++
T Consensus 473 i~~~~~~~~~i~~~~lpEt~~~~ 495 (502)
T TIGR00887 473 IFALFMFLGILFTLLIPETKGKS 495 (502)
T ss_pred HHHHHHHHHHHHheEeccCCCCC
Confidence 44444455545556789987754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=224.28 Aligned_cols=346 Identities=11% Similarity=0.051 Sum_probs=200.5
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH---hccchH
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS---MHEKLH 142 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~---~~~~~~ 142 (499)
.....+.|+++++|+|+.++|++.+...+...+ +|++|.++||+ +||+.++++..+.++....+. ..+...
T Consensus 29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (420)
T PRK09528 29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-----GLKKHLLWIISGLLVLFGPFFIYVFAPLLQ 103 (420)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445678888999999999999999999886 99999999997 456666555444333322111 111100
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHH
Q 041017 143 LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAG 222 (499)
Q Consensus 143 ~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~ 222 (499)
........+.++..+.........+.++.++.+++++..++..+...++|..++++++|.+.+. +|+.+|++.++..+
T Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~ 181 (420)
T PRK09528 104 -YNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSAL 181 (420)
T ss_pred -HHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHH
Confidence 0011111222222221111111122222222234567778888888899999999999988764 89999988777766
Q ss_pred HHHHHHhc-ccCCCCCCcchh-hhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCCh
Q 041017 223 LLILVGIL-LNEPQVPDFNYK-QVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQ 300 (499)
Q Consensus 223 ~~~~~~~~-~~e~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 300 (499)
+..+..++ .||++++.+.++ +.+++.+...++..+.+|||+++...++.+.............+.|..+.....+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (420)
T PRK09528 182 ILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGT 261 (420)
T ss_pred HHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Confidence 55444433 333332211000 0000111223445677889887655543332221111111111122222111135666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHh
Q 041017 301 ETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQL 380 (499)
Q Consensus 301 ~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (499)
.+.|.+..+..++..++.++.+++.||+++|+.+..+.++..+.... ..+ .++.+..+....+.+.....
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l-~~~---------~~~~~~~~~~~~l~g~~~~~ 331 (420)
T PRK09528 262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIG-SGF---------ATGPLEVSILKLLHAFEVPF 331 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH-HHh---------cccHHHHHHHHHHHHHHHHH
Confidence 77788888888888899999999999999999877766655543221 111 11112222222333333333
Q ss_pred hhhHHHHHHHhhCCCChhHHHHHH-HHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 381 KWMPLLVLSSRLCPSGIEGTFFAL-LMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 381 ~~~p~~~~~~~~~p~~~~g~~~gl-~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
.......++.+..|++.+++.++. ++...++|..++|.++|++.+.+|+
T Consensus 332 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~ 381 (420)
T PRK09528 332 LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGF 381 (420)
T ss_pred HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 333345677888999999988766 6777889999999999999998763
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=221.59 Aligned_cols=338 Identities=20% Similarity=0.216 Sum_probs=225.3
Q ss_pred cchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc
Q 041017 61 GLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE 139 (499)
Q Consensus 61 g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~ 139 (499)
++..+......+.++++++|.|+++.+++.+++.++..+ +|+.|+++||+ +||+.++.+.++.+++...+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~ 83 (352)
T PF07690_consen 9 GFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-----GRRRVLIIGLLLFALGSLLLAFAS 83 (352)
T ss_dssp HHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCeeeEeehhhhhhhHHHHhhhhh
Confidence 333344555555366789999999999999999998876 99999999997 566788889888888855655656
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHH
Q 041017 140 KLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTI 219 (499)
Q Consensus 140 ~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~ 219 (499)
+.+ .++..+++.|++.+...+...+++.|..++ ++|++..+..+.+.++|.++++.+++.+.+..+||+.|++.++
T Consensus 84 ~~~--~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 84 NFW--LLLIARFLLGIGSGFFSPASNALIADWFPP--EERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI 159 (352)
T ss_dssp CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred hHH--HHhhhccccccccccccccccccccccchh--hhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence 665 345678889999988999999999998853 6899999999999999999999999999988999999999888
Q ss_pred HHHHHHH-HHhcccCCCCCCcchhhhhH--HHHHHHHH-HHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCC
Q 041017 220 PAGLLIL-VGILLNEPQVPDFNYKQVNL--KFLDAGKA-MWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAG 295 (499)
Q Consensus 220 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (499)
..++..+ ..++.++++++++..++.++ +.++..++ ....+++|.+|......++............+.|..+ .
T Consensus 160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~ 236 (352)
T PF07690_consen 160 LSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQE---V 236 (352)
T ss_dssp HHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCH---H
T ss_pred hhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhh---c
Confidence 8777644 33445544433321111111 11111222 2334445555523222222211111111111122122 2
Q ss_pred CCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 296 PSFS-QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 296 ~g~s-~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
+|++ ..+.+.+.....+..+++..+.+++.||+++|+..........+..+....... ..+.........+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 309 (352)
T PF07690_consen 237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF-------SSSPVWLIIALFLI 309 (352)
T ss_dssp HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH-------HCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHH
Confidence 6777 678888888888888888999999999998877666655554443322111111 01112222233445
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHH
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSS 417 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~ 417 (499)
++..+.......++..+..|++.+|+++|+.+.+.++|..+||
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 310 GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5555555556678899999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-25 Score=227.40 Aligned_cols=350 Identities=17% Similarity=0.164 Sum_probs=244.8
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc-c-chH-
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH-E-KLH- 142 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~-~-~~~- 142 (499)
......+|++|..|+++..+|.+..+..+..++ +|+.|.++||.+.+.+||||+++++.++.+++..++... | +..
T Consensus 20 ~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~ 99 (428)
T PF13347_consen 20 LSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF 99 (428)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence 344555677889999999999999888777766 999999999988776799999999999999988887766 4 222
Q ss_pred ---HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc-------ChhH
Q 041017 143 ---LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI-------GPKG 212 (499)
Q Consensus 143 ---~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~-------gw~~ 212 (499)
...+.+..++..++....+++..++.+|+++ ++++|.+..+..+.+..+|..+...+.+.+.+.+ +|++
T Consensus 100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~-~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~ 178 (428)
T PF13347_consen 100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTP-DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRW 178 (428)
T ss_pred hhHHHHHHHHHHHHHHhhhhccCchhhcCccccc-cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHH
Confidence 1122444556688888889999999999986 3578999999999999999987777777665422 5888
Q ss_pred HHHHHHHHHHHH-HHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEec
Q 041017 213 VFGLMTIPAGLL-ILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTD 291 (499)
Q Consensus 213 ~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 291 (499)
..++.++...+. .+..+..||+++..+++ +++.+. .+..++.++||+++......++.............||.++
T Consensus 179 ~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~-~~~~~~---~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~ 254 (428)
T PF13347_consen 179 MALVLAIVGLVFFLITFFFVKERSVEVTEQ-EKKISL---RDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTY 254 (428)
T ss_pred HHHHHHHHHHHHhhhhhheeeecccccccc-cccccc---ccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 888877777666 44566788832222111 111122 2234567788887766665555443322222233455555
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHH
Q 041017 292 SKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDE 371 (499)
Q Consensus 292 ~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 371 (499)
. .|.+ ...+.+.....++.+++.++.+++.||+|+|+.+..+.++.++..+..... . .++.+..+...
T Consensus 255 v---l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~i~~ 322 (428)
T PF13347_consen 255 V---LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL-G-------PGSPWLVLILF 322 (428)
T ss_pred H---hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH-H-------hhhHHHHHHHH
Confidence 4 3433 445666677888899999999999999999999988888777754432221 1 12333333334
Q ss_pred HHHHHHHHhhhhHHHHHHHhhCC-------CChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccC
Q 041017 372 GISRMVGQLKWMPLLVLSSRLCP-------SGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQ 433 (499)
Q Consensus 372 ~l~~~~~~~~~~p~~~~~~~~~p-------~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~ 433 (499)
.+.+...+.......++.+|..+ ++.+|..+|..+.+.+++..+++.+.|.+.+..|+.++.
T Consensus 323 ~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~ 391 (428)
T PF13347_consen 323 ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANA 391 (428)
T ss_pred HHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCc
Confidence 44455444444434556666554 567899999999999999999999999999999987543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=215.97 Aligned_cols=340 Identities=16% Similarity=0.092 Sum_probs=215.4
Q ss_pred cchhhhhhhhHHHHhhhccCCChhH-----HHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHH
Q 041017 61 GLGGALARVGTQYYMKDVQKVQPSE-----AQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLL 134 (499)
Q Consensus 61 g~~~~~~~~~~~~~l~~~~g~s~~~-----~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~ 134 (499)
+...++....++.+.+ ++|++..+ .|++.++..++..+ +|++|+++||+ +||+.++.+.++.+++...
T Consensus 27 ~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~ 100 (408)
T PRK09874 27 GAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-----GRKIMLLRSALGMGIVMVL 100 (408)
T ss_pred HHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----CcHHHHHHHHHHHHHHHHH
Confidence 3333445556666654 68888655 47777888888776 99999999997 5677788888888888777
Q ss_pred HHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHH
Q 041017 135 LSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVF 214 (499)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f 214 (499)
+++.++++. +...+++.+++.+.. +...+++.+..+ +++|++..+..+.+..+|..+++.+++.+.+..+||+.|
T Consensus 101 ~~~~~~~~~--~~~~~~~~g~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 175 (408)
T PRK09874 101 MGLAQNIWQ--FLILRALLGLLGGFV-PNANALIATQVP--RNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVF 175 (408)
T ss_pred HHHHhhHHH--HHHHHHHHHHhhhhH-HhHHHHHHHhcC--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 777777654 344566667665543 445566666653 467999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHH-HhhhhhccccccccceeEEecC
Q 041017 215 GLMTIPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLY-MYLSFAVSLNIHEGLFYWYTDS 292 (499)
Q Consensus 215 ~~~a~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 292 (499)
++.++..++..+ ..+++||++++.+++++ ...++.++.+++|+.+..... .+...............|..+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIRENFQPVSKKEM------LHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVREL 249 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccchhh------hHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988776655533 44556665432221110 112334556778776543322 2221111100111111121221
Q ss_pred CCCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHH
Q 041017 293 KAGPSFSQ--ETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVID 370 (499)
Q Consensus 293 ~~~~g~s~--~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 370 (499)
. ...+. ...+.+..+..++.+++....+++.||+++|+.+..+.+...+..+. ... .++.+.....
T Consensus 250 ~--~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~ 317 (408)
T PRK09874 250 A--GNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP-MSF---------VQTPLQLGIL 317 (408)
T ss_pred h--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-HHH---------hccHHHHHHH
Confidence 0 11111 12344445566777888888999999999999887766554442211 111 1111222222
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 371 EGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 371 ~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
..+.++..+.......+...+..|++.+|+.+|+.+.+.++|..+||.++|.+.+..|+
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~ 376 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGF 376 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcch
Confidence 23344444444444456677888999999999999999999999999999999887653
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=211.26 Aligned_cols=331 Identities=10% Similarity=0.034 Sum_probs=217.9
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcc---hHHHHHhHHHHHHHHHHHhccch
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRR---PYFILAGCLGVFSMLLLSMHEKL 141 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk---~~ll~~~~~~~~~~~~~~~~~~~ 141 (499)
+....++.+++ ++|+|.+++|++.+++.+...+ +|++|+++||++ ||+ +.+..+..+.. ...+..++++
T Consensus 22 ~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~----~~~~~~~~~~~~~~l~~--~~~~~~~~~~ 94 (382)
T TIGR00902 22 IFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDAN----HIIIALRLLALASAIFA--AAFSAGAHNA 94 (382)
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHH--HHHHHhhhhH
Confidence 44445556664 6899999999999998888765 999999999962 222 12222222221 1223345666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 142 HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 142 ~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
+. ++..+.+.+.+.+...+..+++..+. +++|++..+....+.++|.+++|++++.+.+.+|||..|++.++..
T Consensus 95 ~~--l~~~~~l~~~~~~~~~p~~~al~~~~----~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 95 WL--LFIAIGLFALFFSAGMPIGDALANTW----QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL 168 (382)
T ss_pred HH--HHHHHHHHHHHHccchhHHHHHHHHH----HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 53 23345555666555556677776543 2467888999999999999999999999999999999998765543
Q ss_pred HHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChh
Q 041017 222 GLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301 (499)
Q Consensus 222 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 301 (499)
.+..+.....|+.++++++.+++ . +..+...+.+|+|+++...+..++.......+....+.+..+ .|.++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~----~g~s~~ 240 (382)
T TIGR00902 169 AFMLIGFLIKPTIPPKDAIPEDE-S---QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA----AGISAS 240 (382)
T ss_pred HHHHHHHHcCCCCCCCccccccc-c---ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHh
Confidence 22222222233322221111010 0 112234577889988877665555333211111111112222 788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhh
Q 041017 302 TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLK 381 (499)
Q Consensus 302 ~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (499)
++|.+...+.++.+++..+.+++.||++.|+++.++.+...+.... ... .++.+..+....+.++..+..
T Consensus 241 ~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~-~~~---------~~~~~~~~~~q~l~g~~~~~~ 310 (382)
T TIGR00902 241 ATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI-IGA---------IEAFPLIFLLQILHCGTFAVC 310 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH-HHh---------HhhHHHHHHHHHHHHHHHHHH
Confidence 9999988899999999999999999999999988877766654321 111 123233344566777777777
Q ss_pred hhHHHHHHHhhCCCChhHHHHHHHHH-HHhhHHHhHHHHHHHHHHHhC
Q 041017 382 WMPLLVLSSRLCPSGIEGTFFALLMS-IDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 382 ~~p~~~~~~~~~p~~~~g~~~gl~~~-~~~lg~~ig~~l~g~l~~~~g 428 (499)
+.+...++.+. |++.+++..|+++. ...+|..++|.++|.+.+.+|
T Consensus 311 ~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 311 HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77777788887 98899999999875 456899999999999999875
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=212.98 Aligned_cols=353 Identities=13% Similarity=0.038 Sum_probs=224.6
Q ss_pred hHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHH
Q 041017 51 GVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGV 129 (499)
Q Consensus 51 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~ 129 (499)
.....+++...++..+....++ .+.+++|.+.++.++..+++.+++.+ +|++|+++||+ +||+.++.+..+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~l~~~~~~~~ 92 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGII-NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-----GRRPVLITGALIFT 92 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-----CchHHHHHHHHHHH
Confidence 3334444444444445555554 35778999999999999999999886 89999999997 67788888999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC
Q 041017 130 FSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG 209 (499)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g 209 (499)
++.+.++++++++. ++..|+++|++.+...+...+++.|..+ +++|++.+++.+.+..+|..+||.+++.+.+..|
T Consensus 93 ~~~~~~~~a~~~~~--l~~~r~l~Gi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g 168 (413)
T PRK15403 93 LACAATLFTTSMTQ--FLIARFIQGTSICFIATVGYVTVQEAFG--QTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH 168 (413)
T ss_pred HHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99888888888764 3567888888877655556667777753 3578888999999999999999999999998899
Q ss_pred hhHHHHHHHHHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeE
Q 041017 210 PKGVFGLMTIPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYW 288 (499)
Q Consensus 210 w~~~f~~~a~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 288 (499)
||+.|++.++..++..+ ..+.+||++++++++.+ .++..+++++.+|||.++...+..++.......+....+++
T Consensus 169 w~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~ 244 (413)
T PRK15403 169 WKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFS----AKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVI 244 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCC----hHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 99999998887666543 34567886543221111 11223455677899988776554443322211111111222
Q ss_pred EecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHH
Q 041017 289 YTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALV 368 (499)
Q Consensus 289 ~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 368 (499)
..+ ..|+++.+.++.......+.+++..+.+++.+|+..++.......+..+..+. ....... ..+......
T Consensus 245 l~~---~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l-~~~~~~~----~~~~~~~~~ 316 (413)
T PRK15403 245 LID---AGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL-LIVGNLL----WPHVWLWSV 316 (413)
T ss_pred HHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH-HHHHHHH----ccccHHHHH
Confidence 222 26889999998877777788888888888887665555432222121111111 1110000 011111111
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHH
Q 041017 369 IDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 369 ~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~ 426 (499)
....+..+..+....+... .+....+..+|++.|+.+.....+..+++..+|++.+.
T Consensus 317 ~~~~l~~~G~~~~~p~~~~-~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 317 LGTSLYAFGIGLIFPTLFR-FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHHHHhHHHHH-HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1222223332322222221 12112223478999999999988889999999987765
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-23 Score=208.86 Aligned_cols=328 Identities=12% Similarity=0.015 Sum_probs=206.8
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHH---HHhccc-
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLL---LSMHEK- 140 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~---~~~~~~- 140 (499)
+....++.++++++|+|++++|++.+++.+++.+ +|++|+++||+ +||+.++.+.+...++.+. .+..+.
T Consensus 33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (392)
T PRK12382 33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-----GAKRSALQGMLACGLAGLAYLLAAILPVS 107 (392)
T ss_pred HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-----cchHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3444555567789999999999999999999887 99999999997 5666777776665554332 222221
Q ss_pred --hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHH
Q 041017 141 --LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMT 218 (499)
Q Consensus 141 --~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a 218 (499)
.....+++.+++.|++.+...+...+++.|..+ +++|++++++...+.++|..+||++++.+.+.+|||..+.+..
T Consensus 108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~ 185 (392)
T PRK12382 108 APFKFALLVVGRLILGFGESQLLTGALTWGLGLVG--PKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTM 185 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 122234567888899988777777777788764 4789999999999999999999999999999899998877654
Q ss_pred HHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCC
Q 041017 219 IPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSF 298 (499)
Q Consensus 219 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 298 (499)
+..++.+......||+++++++ +.+.++..+ .+.++.+... +..+.... .......+..+ .|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~-l~~~~~~~----~~~~~~~~~~~----~~~ 248 (392)
T PRK12382 186 VLPLLAWAFNGTVRKVPAHAGE----RPSLWSVVG----LIWKPGLGLA-LQGVGFAV----IGTFVSLYFAS----KGW 248 (392)
T ss_pred HHHHHHHHHHHhccCCCCCccc----CchHHHHHH----HHHHhHHHHH-HHHHHHhH----HHHHHHHHHHh----cCC
Confidence 4443332222333443222111 111122221 1112222111 11111000 00001111122 344
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHH
Q 041017 299 SQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVG 378 (499)
Q Consensus 299 s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (499)
+. .+.......++.+++.++.+++.||+++|+.+..+..+.++..+. ... .++.........+.++..
T Consensus 249 ~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~l~g~~~ 316 (392)
T PRK12382 249 AM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL-LWL---------APTAWVALAGAALTGAGC 316 (392)
T ss_pred ch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH-HHH---------cccHHHHHHHHHHHHHHH
Confidence 43 344445566777888899999999999998887766655553321 111 111122222223334443
Q ss_pred HhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 379 QLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 379 ~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
+....+..+...+.+|++.+|+.+|+.+...++|..++|.+.|.+.+..|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~ 367 (392)
T PRK12382 317 SLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY 367 (392)
T ss_pred HhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 433333456778889999999999999999999999999999999998763
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=212.07 Aligned_cols=335 Identities=14% Similarity=0.121 Sum_probs=215.9
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
......+.++++++|+|++++|+..+...+...+ +|+.|.++||+ +||+.++++.+...++.+.+++.++++..
T Consensus 25 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (395)
T PRK10054 25 ATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-----DKKRYMLLAITAFASGFIAIPLVNNVTLV 99 (395)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CcchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344455678888999999999999988887765 99999999997 56778888888888888888888876542
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
+..+.+.+.+.+...+...++..|..+ +++|++..++.+...++|.++||++++.+.+ .+|+.+|++.++..++.
T Consensus 100 --~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 100 --VLFFALINCAYSVFSTVLKAWFADNLS--STSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFP 174 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 233444455555455556777777763 4679999999999999999999999998875 69999999877666554
Q ss_pred HH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHH
Q 041017 225 IL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETV 303 (499)
Q Consensus 225 ~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 303 (499)
.+ ..+++||+++++++ ++ ++ . .+..+.+|||+++......++..............+.... .+.+.+....
T Consensus 175 ~i~~~~~~~~~~~~~~~-~~--~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 246 (395)
T PRK10054 175 LVFIQIWVQRSEKAIAT-ET--GS---V-WSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV-ADSDFAEKVV 246 (395)
T ss_pred HHHHHHHHhcccccccc-ch--hh---h-hhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh-cccchHHHHH
Confidence 33 33445554322211 11 11 1 1224567888876665544432221100001111111111 1245666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhh
Q 041017 304 GFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWM 383 (499)
Q Consensus 304 g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (499)
+.+.....+..+......+++.||+++|+.+..+.++.++..+. +... .++.+.......+.++... ...
T Consensus 247 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~g~~-~~~ 316 (395)
T PRK10054 247 AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVG-FIFS--------GNSLLLWGMSAAVFTVGEI-IYA 316 (395)
T ss_pred HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHH-HHHc--------chHHHHHHHHHHHHHHHHH-HHH
Confidence 77766666666666778889999999888877766554443221 1110 0111111112223333322 223
Q ss_pred H-HHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 384 P-LLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 384 p-~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
| ..+.+.+..|++.+|++++..+ ...+|..+||.++|.+.|..|.
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~ 362 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPP 362 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcCh
Confidence 3 3467888999999999998755 6778999999999999998764
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=214.19 Aligned_cols=348 Identities=10% Similarity=-0.009 Sum_probs=222.1
Q ss_pred hhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHh
Q 041017 47 SFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAG 125 (499)
Q Consensus 47 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~ 125 (499)
+..+.+++.+ +..+......+...+. +++++|+|+++.+++.+...+++.+ .++.|+++||+ +||+.++.+.
T Consensus 7 ~~~~~~~~~~-~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----g~r~~~~~~~ 79 (394)
T PRK03699 7 KLTWISFLSY-ALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-----PLKRQLIFGF 79 (394)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHH
Confidence 4445555555 4444444445555554 5678999999999999999999877 88899999997 6777888888
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh
Q 041017 126 CLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV 205 (499)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~ 205 (499)
++.+++...++++++++. +.+.+++.+++.+...+...+++.|..+ +++|+...+..+....+|..++|.+.+.+.
T Consensus 80 ~~~~i~~~l~~~~~~~~~--~~~~~~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 80 ALMILAVAGLMFSHSLAL--FSIAMFVLGVVSGITMSIGTFLITHVYE--GKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred HHHHHHHHHHHHcchHHH--HHHHHHHHHHhhHhhccchhHHhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887663 3456777888877776667778888764 357888888888888899999999988876
Q ss_pred c-ccChhHHHHHHHHHHHHHHHHHhcc--cCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhcccccc
Q 041017 206 H-LIGPKGVFGLMTIPAGLLILVGILL--NEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIH 282 (499)
Q Consensus 206 ~-~~gw~~~f~~~a~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 282 (499)
. ..|||+.|.+.+++.++..+..++. ||.+++++ ++. + +..+ ...++.++...+..++.........
T Consensus 156 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~-~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (394)
T PRK03699 156 ARSIEWYWVYACIGLVYVAIFILTLFSEFPALGKHAP--KAD-K---PVAK----EKWGIGVLFLAIAALLYILAQLTFI 225 (394)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhcCCccccccCc--ccc-C---cccc----ccCChHHHHHHHHHHHHHHHHHHHH
Confidence 5 5799999998777666553333322 22111111 000 0 0000 0113444433333332221111111
Q ss_pred ccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 041017 283 EGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIP 362 (499)
Q Consensus 283 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 362 (499)
...+.|..+ .+|+|+.+.+.+.....++..+|..+.+++.||+++|+.+.....+..+... .+... +
T Consensus 226 ~~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~---~~~~~-------~ 292 (394)
T PRK03699 226 SWVPEYAQK---KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMY---LFVNT-------D 292 (394)
T ss_pred HHHHHHHHH---HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH---HHHHc-------C
Confidence 111122222 2788888888887777788899999999999999999887765544443211 11111 1
Q ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 363 DFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
+.........+.++..+..+....+...+..|. .+++..|....+.++|..++|.+.|.+.+..|+
T Consensus 293 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~ 358 (394)
T PRK03699 293 DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGL 358 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCc
Confidence 111111122233333333333334455666654 456778889999999999999999999998764
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=212.70 Aligned_cols=342 Identities=20% Similarity=0.204 Sum_probs=234.5
Q ss_pred hhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh---ccc
Q 041017 65 ALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM---HEK 140 (499)
Q Consensus 65 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~---~~~ 140 (499)
.+.....+.++. +..-|+..++++..+..+|..+ +|+.|.++||+ .||++++.+.++.++....++. .+.
T Consensus 27 ~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-----drrrili~~~~~~~~~~~~L~~l~~~~~ 100 (524)
T PF05977_consen 27 WMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-----DRRRILILSQLLRALVALLLAVLAFFGL 100 (524)
T ss_pred HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345555555554 4455899999999999999875 99999999997 6778888888776655444332 232
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHH
Q 041017 141 LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIP 220 (499)
Q Consensus 141 ~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~ 220 (499)
...+.++...++.+++.++..+..++++.|+.++ ++..+++++.....++..++||.++|.++..+|..++|.+.++.
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~--~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inals 178 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK--EDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALS 178 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2323344566888999999999999999999854 56777889999999999999999999999988999999988776
Q ss_pred HHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHcc-CcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCC
Q 041017 221 AGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLK-FPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299 (499)
Q Consensus 221 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 299 (499)
.++.+......|.++++.+.. .+++.+.+++.++..+ +|.+...++..++.++....+...++++..+. +|.+
T Consensus 179 fl~~i~~l~~~~~~~~~~~~~---~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~---l~~~ 252 (524)
T PF05977_consen 179 FLISILALLRWKPPPPPSSLP---RERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV---LGGG 252 (524)
T ss_pred HHHHHHHHHHccccccccccc---hhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH---hCCc
Confidence 665544333343322221111 1233344444444444 45544444333333322111122222332232 7788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHH
Q 041017 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQ 379 (499)
Q Consensus 300 ~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (499)
+..+|++....++|.++|+++.+++.+|.+.++++..+.+..+++.+. +.+ .++.+..+....+.+++..
T Consensus 253 a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~-lal---------~~~~~~~~~~l~l~G~~~~ 322 (524)
T PF05977_consen 253 ASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLL-LAL---------SPSFWLALIALFLAGAAWI 322 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHH-Hhc---------chHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999988888887776666653221 111 1222232333334455444
Q ss_pred hhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCc
Q 041017 380 LKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVT 430 (499)
Q Consensus 380 ~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~ 430 (499)
....+..+...+..|++.+|+++|+++++.+.+..+|..+.|.+.+.+|..
T Consensus 323 ~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~ 373 (524)
T PF05977_consen 323 IANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVR 373 (524)
T ss_pred HHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 445556678889999999999999999999999999999999999998743
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=208.69 Aligned_cols=337 Identities=10% Similarity=0.037 Sum_probs=207.2
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH---hc-cchHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS---MH-EKLHL 143 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~---~~-~~~~~ 143 (499)
...+++++ ++|.|+++.|+..+.+.+++.+ +|+.|+++||+ +||+.+..+..+..++...+. .. ++..
T Consensus 34 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-----g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 106 (402)
T TIGR00897 34 GWLSPFLK-ALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-----GPLKTMMIGLLLWCVGHAAFIVFGLGHANYP- 106 (402)
T ss_pred HhHHHHHH-HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHhccCccHH-
Confidence 34456664 6899999999999999999876 99999999997 677778788877777655442 22 3433
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHH-HHHHHHHhHhhcccChhHHHHHHHHHHH
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGA-LIGYSISGIFVHLIGPKGVFGLMTIPAG 222 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~-~lg~~l~g~l~~~~gw~~~f~~~a~~~~ 222 (499)
.+...+++.++|.+.......+.+.+.. ++++|++++|+.+.+.++|. ++++++++.+.+.+||+..+|.......
T Consensus 107 -~l~~~~~i~G~g~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~ 183 (402)
T TIGR00897 107 -LILLFYGIRGLGYPLFAYSFLVWVVYNT--KQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVL 183 (402)
T ss_pred -HHHHHHHHHHcchHHHHhHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 2345667778877665555556666665 34689999999999999997 6899999999988897766554332222
Q ss_pred HH-HHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChh
Q 041017 223 LL-ILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301 (499)
Q Consensus 223 ~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 301 (499)
+. .+..+..+++++++++++ +++.++..+...+.+|+|+++...+..++............+++.. ++|++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~g~s~~ 257 (402)
T TIGR00897 184 TGGVIALFSNKDIFTPQHMQT--REKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVA----ELGFSTS 257 (402)
T ss_pred HHHHHHHhccCCCCCcccccC--CcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCChh
Confidence 22 222333444322111111 1111122223445678888776554443322211111111122222 2688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHh
Q 041017 302 TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLF-WAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQL 380 (499)
Q Consensus 302 ~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (499)
+.+.+.....++.+++..+.+++.||+++|+.+. .+.+..++..+. +...... .............+.++..+.
T Consensus 258 ~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~-l~~~~~~----~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 258 EWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA-LYYIPQH----FGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH-HHHHHHc----cCCcHHHHHHHHHHHHHHHHH
Confidence 8787777778899999999999999999887653 222222222111 1111100 011111111222233333222
Q ss_pred hhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 381 KWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 381 ~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
..|......+. +++++|+.+|+.+...++|..++|.++|.+.+..|
T Consensus 333 -~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g 378 (402)
T TIGR00897 333 -YVPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG 378 (402)
T ss_pred -HHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 24444555565 45689999999999999999999999999998766
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=219.43 Aligned_cols=355 Identities=10% Similarity=0.053 Sum_probs=231.8
Q ss_pred HhhhccCCC---hhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHH
Q 041017 74 YMKDVQKVQ---PSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSA 149 (499)
Q Consensus 74 ~l~~~~g~s---~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (499)
.+++++|++ +.+.++..+++.++..+ .+++|+++||+ +||+.++++.++..++.++++++++++. +++.
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-----Grr~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~ 186 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-----GRKKVLLLSTLVTAVSGVLTAFSPNYTV--FLVF 186 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-----cchHHHHHHHHHHHHHHHHHHHcccHHH--HHHH
Confidence 457789999 99999999999999887 88999999997 6778888899998888888889888764 4567
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHHh
Q 041017 150 LTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGI 229 (499)
Q Consensus 150 ~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~~ 229 (499)
+++.|++.+...+...+++.|..+ +++|++..++...+..+|.++++.+++.+.+ ||+.|++.+++.++..+..+
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLP--KKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHH
Confidence 788899988888888889999874 4679999999999999999999988766553 99999998888776655567
Q ss_pred cccCCCCCCc---chhhhhHH--------------------HHHH---H---HHHHHHccCcchhhHHHHHhhhhhcccc
Q 041017 230 LLNEPQVPDF---NYKQVNLK--------------------FLDA---G---KAMWTTLKFPLVWRPCLYMYLSFAVSLN 280 (499)
Q Consensus 230 ~~~e~~~~~~---~~~~~~~~--------------------~~~~---~---~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 280 (499)
++||++++.. +.++..+. .++. . ....+.+++|+++...+..++.......
T Consensus 262 ~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (505)
T TIGR00898 262 FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF 341 (505)
T ss_pred hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 7899875421 10000000 0000 0 1234567777765554433222111100
Q ss_pred ccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccC
Q 041017 281 IHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFG 360 (499)
Q Consensus 281 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~ 360 (499)
......++... .+.+... ......+..+++.++.+++.||+++|+.+.++.++.+++.+.. ....
T Consensus 342 ~~~~~~~~~~~----~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~-~~~~------- 406 (505)
T TIGR00898 342 SYYGLVLDLGN----LGGNIYL---DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLL-LFVP------- 406 (505)
T ss_pred HHHHHhccccc----cCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHcC-------
Confidence 00111122222 3444322 2234456667778888888999999998888776666543321 1111
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHH
Q 041017 361 IPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLA 440 (499)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 440 (499)
....+.......+..+.....+.....+..|.+|++.|++++|+.+.+.++|..++|.+.+ +.+. + ....
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-~--------~~~~ 476 (505)
T TIGR00898 407 VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-W--------LFLP 476 (505)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-H--------HhhH
Confidence 0111111122222333333333344577889999999999999999999999999999988 4332 1 1112
Q ss_pred HHHHHhHhHHHHHHHhhcCCCCCCC
Q 041017 441 ILIRNILRITPLCVIFLVPRGDPDT 465 (499)
Q Consensus 441 ~~i~~~~~li~l~~~~~lp~~~~~~ 465 (499)
+.+.++..+++.+...++||++++.
T Consensus 477 ~~~~~~~~~~~~~~~~~lpet~~~~ 501 (505)
T TIGR00898 477 LVLFGGLALLAGILTLFLPETKGVP 501 (505)
T ss_pred HHHHHHHHHHHHHHHHcCcCCCCCC
Confidence 2333444455555566889887643
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-23 Score=207.17 Aligned_cols=329 Identities=15% Similarity=0.126 Sum_probs=214.9
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
....+.+ .+++|+|+++.++..++..++..+ +|++|+++||+ +||+.+..+..+..++...+.+.++.+. +
T Consensus 11 ~p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~i~~~~~~~~~~~~~--~ 82 (377)
T PRK11102 11 LPALPVI-AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-----GRKPVILGGTLVFALAAVACALAQTIDQ--L 82 (377)
T ss_pred hccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-----CChHHHHHHHHHHHHHHHHHHHHccHHH--H
Confidence 3344444 457999999999999999998877 88999999997 6788888899888888888888877654 3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH-H
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL-I 225 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~-~ 225 (499)
...+++.+++.+...+...+++.|..+ +++|++..++.+....+|..+++.+++.+.+..+||+.|++.++..++. +
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFP--KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 456778888888888888899998874 4689999999999999999999999999999899999999877766655 3
Q ss_pred HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHH
Q 041017 226 LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGF 305 (499)
Q Consensus 226 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 305 (499)
+..++.||+++.+++++ .+.++..++..+.+++|+.+...+..++.......+....+++..+ ..|+++.+.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~ 234 (377)
T PRK11102 161 LVFFFIPETLPKERRQP---FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIE---LNGVSPQNFGY 234 (377)
T ss_pred HHHHhCCccCcccccCC---CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHH---HhCCCHHHHHH
Confidence 34556777643322111 1112223344567778876655443333221111111111111222 26788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHH
Q 041017 306 VLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPL 385 (499)
Q Consensus 306 ~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ 385 (499)
+.....++.+++..+.+++.||+++|+.+..+.....+..+........ + ...+.......+.....+......
T Consensus 235 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~ 308 (377)
T PRK11102 235 YFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-D-----LGFWALVVGVAAFVGCVSMISSNA 308 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-h-----hhHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888889999999999999999999998877765544432221111100 0 011111111111111112222223
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHh-hHHHhHHHH
Q 041017 386 LVLSSRLCPSGIEGTFFALLMSIDN-AGVLSSSWG 419 (499)
Q Consensus 386 ~~~~~~~~p~~~~g~~~gl~~~~~~-lg~~ig~~l 419 (499)
.....+..| +.+|+..++.+.... +|..+++.+
T Consensus 309 ~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 309 MAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344556555 788898888776644 344444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=206.87 Aligned_cols=330 Identities=15% Similarity=0.071 Sum_probs=215.0
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
......+ .+.+++|.|+.+.++..+.+.++..+ +|+.|+++||+ +||+.++.+.++..++...+..+++.+.
T Consensus 21 ~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~l~~~~~~~~i~~~~~~~~~~~~~- 93 (392)
T PRK10473 21 MYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-----GRKPVAIPGAALFIIASLLCSLAETSSL- 93 (392)
T ss_pred HHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-----CChHHHHHHHHHHHHHHHHHHHhCcHHH-
Confidence 4444554 45678999999999999999999876 89999999997 6778888888888888888888777653
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
+...+++.+++.+...+...+++.|..+ +++|++..+..+....+|..++|.+++.+.+..+||+.|++.++..++.
T Consensus 94 -~~~~~~l~g~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~ 170 (392)
T PRK10473 94 -FLAGRFLQGIGAGCCYVVAFAILRDTLD--DRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV 170 (392)
T ss_pred -HHHHHHHHHhhhhHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence 3456677888888777778888888874 4689999999999999999999999998888889999999887766655
Q ss_pred H-HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHH
Q 041017 225 I-LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETV 303 (499)
Q Consensus 225 ~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 303 (499)
. +..+.+||++++++++++ + ..++.++.+++|+++...+..++.......+....+++..+ .+|+++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~ 241 (392)
T PRK10473 171 LLLSLFILKETRPARAPAAS---S---KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLME---QMGFSRGEY 241 (392)
T ss_pred HHHHHHHcCCCCCcccCCcc---c---hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH---HcCCCHHHH
Confidence 3 344566776543321111 1 11223455677765544333222111100111111122222 268888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhh
Q 041017 304 GFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWM 383 (499)
Q Consensus 304 g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (499)
+.+.....++.+++..+.+++.||+++|+.+..+.+...+..+. ...... +. ...... .+.....+...
T Consensus 242 ~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~~~-------~~-~~~~~~-~l~~~g~~~~~- 310 (392)
T PRK10473 242 AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGIT-LALSPS-------HA-VSLFGI-TLICAGFSVGF- 310 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHHHH-------HH-HHHHHH-HHHHHHHHHHh-
Confidence 88888888889999999999999999999887776655543322 111110 01 111111 11111111111
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 384 PLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 384 p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
......+..|.++++ |..++...++..+++.+++.+.+.+|+
T Consensus 311 -~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~ 352 (392)
T PRK10473 311 -GVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGI 352 (392)
T ss_pred -HHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122334455554443 444455667788889999999988774
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=214.01 Aligned_cols=342 Identities=14% Similarity=0.089 Sum_probs=223.4
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+.++++........+ ++.+++|.++.+.+++.++..++..+ .++.|+++||+ +||+.++.+.++..++.+.++
T Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~~~~~~~~ 100 (398)
T TIGR00895 27 LMDGYDLAAMGFAAP-AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-----GRKRVLLWSILLFSVFTLLCA 100 (398)
T ss_pred HHHHHHHHHHHhhHH-HHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-----hhHHHHHHHHHHHHHHHHHHH
Confidence 455554444455554 45668999999999999998888876 88999999997 677888888888888888888
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHH
Q 041017 137 MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216 (499)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~ 216 (499)
+.++.+. ++..+++.+++.+...+...+++.|..+ +++|++..++.+.+..+|..+++.+++.+.+..|||+.|++
T Consensus 101 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 101 LATNVTQ--LLILRFLAGLGLGGLMPNLNALVSEYAP--KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred HccchHH--HHHHHHHHhcccccchhhHHHHHHHHcC--HHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 8777664 3456678888888888888899999874 36799999999999999999999999999999999999988
Q ss_pred HHHHHHHH-HHHHhcccCCCCCCcch--hhhh---------------------HHHHHHHHHHHHHcc-Ccc---hhhHH
Q 041017 217 MTIPAGLL-ILVGILLNEPQVPDFNY--KQVN---------------------LKFLDAGKAMWTTLK-FPL---VWRPC 268 (499)
Q Consensus 217 ~a~~~~~~-~~~~~~~~e~~~~~~~~--~~~~---------------------~~~~~~~~~~~~~l~-~~~---~~~~~ 268 (499)
.++...+. .+...++||+++...++ ++.. ++.++..++.++.++ ++. .+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLW 256 (398)
T ss_pred hhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHH
Confidence 76555544 44455677764321100 0000 000011112222222 221 11111
Q ss_pred HHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhh
Q 041017 269 LYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLD 348 (499)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~ 348 (499)
...++............+++. +..|+++.+.+.......++.+++.++.+++.||+++|+...... +..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 331 (398)
T TIGR00895 257 LLYFMLLVGVYFLTNWLPKLM----VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLV 331 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHH
Confidence 111111111111111111111 226788888888888888999999999999999999884443332 222221111
Q ss_pred hhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHH
Q 041017 349 LLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLL 423 (499)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l 423 (499)
. . . ..+.........+.++..+.......++..+..|++.+|+.+|+.+++.++|..++|.++|.+
T Consensus 332 ~-~-~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 332 G-S-T-------LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred H-H-H-------hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 1 1 0 011112222233445555555555668889999999999999999999999999999999875
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-23 Score=207.82 Aligned_cols=331 Identities=11% Similarity=0.026 Sum_probs=213.3
Q ss_pred hccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh
Q 041017 59 SQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM 137 (499)
Q Consensus 59 ~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~ 137 (499)
..++..++.....+.+. +++|.|++++|++.+.+.++..+ +|+.|+++||+ +||+.+..+.++..++...+++
T Consensus 17 ~~~~~~~~~~~~lp~~~-~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-----g~k~~~~~~~~~~~~~~~~~~~ 90 (381)
T PRK03633 17 LLTLAIAVLNTLVPLWL-AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-----GFNRSYYLASLIFAAGCAGLGL 90 (381)
T ss_pred HHHHhhhhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666665 57899999999999999999887 88999999997 6777888888888888888888
Q ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHH
Q 041017 138 HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLM 217 (499)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~ 217 (499)
+++++. +...+++.|++.+...+...+.+.+..+ +++|++..+..+.+.++|..+|+.+++.+.+...|.. .+..
T Consensus 91 ~~~~~~--l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~~~ 165 (381)
T PRK03633 91 MVGFWS--WLAWRFVAGIGCAMIWVVVESALMCSGT--SRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL-PWVT 165 (381)
T ss_pred hccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH-HHHH
Confidence 888764 3456788888887776666666666653 4679999999999999999999999998876533322 2222
Q ss_pred HHHHHHHH-HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCC
Q 041017 218 TIPAGLLI-LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGP 296 (499)
Q Consensus 218 a~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (499)
+......+ +.....+|++++++ ++ ++..+.+|+|..+......+.............+.+..+ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~----~ 230 (381)
T PRK03633 166 GLVLAAILPLLFTRILNQQAENH--DS---------TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH----Q 230 (381)
T ss_pred HHHHHHHHHHHHhcccCCCCCCC--CC---------CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----c
Confidence 22221121 12222232211111 00 112344567765543322222111100001111122222 5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHH
Q 041017 297 SFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRM 376 (499)
Q Consensus 297 g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (499)
|.++...|.+.....++.+++....+++.||+++|+.+..+....++..+. . . .. . .... ...+.+.
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~-~-~-~~-------~--~~~~-~~~l~g~ 297 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA-M-L-SQ-------A--AMAP-ALFILGA 297 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH-H-h-hh-------H--HHHH-HHHHHHH
Confidence 788888888877888899999999999999999999887766555543221 1 1 10 0 1111 1112222
Q ss_pred HHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 377 VGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 377 ~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
..........+...|..|++.++...+..+...++|..+||.++|.+.+..|
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g 349 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS 349 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2222233335667788888888888888888899999999999999999876
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=206.88 Aligned_cols=332 Identities=14% Similarity=0.102 Sum_probs=216.3
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
......+ .+.+++|+|+.+.++..+++.+++.+ +|++|+++||+ +||+.++.+..+..++.+.+.+.++++.
T Consensus 26 ~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~- 98 (394)
T PRK11652 26 IYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-----GRRPVILVGMSIFILGTLVALFAHSLTV- 98 (394)
T ss_pred HHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHHHHHHHHHHHHHHHccHHH-
Confidence 3333444 44678999999999999999999887 88999999997 6777888888888888888888777664
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
+...+++.+++.+...+....+..|..+ ++++++..+..+.+..+|..++|.+++.+.+..|||+.|++.++..++.
T Consensus 99 -l~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 99 -LIAASAIQGLGTGVGGVMARTLPRDLYE--GTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred -HHHHHHHHHhhhhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 3456777888877666666677777653 3578888899999999999999999999999899999999887766554
Q ss_pred -HHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHH
Q 041017 225 -ILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETV 303 (499)
Q Consensus 225 -~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 303 (499)
.+..++.||+++..++ + .+ ..+..++.+++|+.+...+..+...............+..+. +|+++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~--~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~ 245 (394)
T PRK11652 176 TFSMARWMPETRPADAR--R--TR---VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV---LGLSSMTV 245 (394)
T ss_pred HHHHHHhCCccCccccc--h--hH---HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH---cCCCHHHH
Confidence 3344567876543221 1 11 123345567788766544433322111000001111122222 67888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhh
Q 041017 304 GFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWM 383 (499)
Q Consensus 304 g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (499)
+++.....++.++++.+.+++.||++++..... ....+..+.... .... .....+.......+.++..+....
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~g~~~~~~ 318 (394)
T PRK11652 246 SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSV--ICCLLAGLLMWI--PGWF---GVMNVWTLLVPAALFFFGAGMLFP 318 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHh---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999998873322221 121111111111 1100 011112222223344444444444
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 384 PLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 384 p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
...++..+..| +.+|+..++.+...++|..+++.+++.+..
T Consensus 319 ~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 319 LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45566777776 578999999999999999998888876643
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=215.31 Aligned_cols=344 Identities=13% Similarity=0.056 Sum_probs=222.5
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHH
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVF 145 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 145 (499)
.....+ ++++++|+|+++.|++.++..++..+ +++.|+++||+ +||+.++.+.++..++.++++++++.+.
T Consensus 14 ~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~-- 85 (379)
T TIGR00881 14 FALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-----NPRVFLPIGLILCAIVNLFFGFSTSLWV-- 85 (379)
T ss_pred hhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-----CCeehhHHHHHHHHHHHHHHHHhhhHHH--
Confidence 344444 56778999999999999999999877 88999999997 6777888888888888888888887664
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHH-HHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGY-SISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~-~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
+++.+++.+++.+...+...+++.|..+ +++|++..++.+.+..+|..+++ .+++.+.+..+||+.|++.++..++.
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFS--RSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcC--HhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 3456788888888888888889998874 36799999999999999999999 46667777889999998877766655
Q ss_pred -HHHHhcccCCCCCCcc-----h--hh------hh-HHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEE
Q 041017 225 -ILVGILLNEPQVPDFN-----Y--KQ------VN-LKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWY 289 (499)
Q Consensus 225 -~~~~~~~~e~~~~~~~-----~--~~------~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 289 (499)
++..++.||+++.++. . ++ .+ ++.++......+.+++|.++...+..++............+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (379)
T TIGR00881 164 SLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYL 243 (379)
T ss_pred HHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556665432110 0 00 00 00001111234567788877655444433221111111111222
Q ss_pred ecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chhHHH-HHHHHHHHHhhhhhhhhhhcccccCCCchhhH
Q 041017 290 TDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYP-FQDVLF-WAQLLSGLSGMLDLLLVLRLNLKFGIPDFVAL 367 (499)
Q Consensus 290 ~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~-~r~~l~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 367 (499)
.+ ..|+++.+.+.......++.+++.++.+++.||.. +|+... ..........+ ..... . ...+....
T Consensus 244 ~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~--~---~~~~~~~~ 313 (379)
T TIGR00881 244 TQ---EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSL--LVYWL--N---PAANPLMD 313 (379)
T ss_pred HH---HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH--HHHhc--C---cchhHHHH
Confidence 22 26888888888888888888889988898888642 233222 11111111111 11100 0 00111111
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCc
Q 041017 368 VIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVT 430 (499)
Q Consensus 368 ~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~ 430 (499)
.....+.+............+..|..|++.||+++|+.+.+.++|..++|.+.|.+.+..|+.
T Consensus 314 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 314 LICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 111122222222222223466789999999999999999999999999999999999988753
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=203.14 Aligned_cols=331 Identities=15% Similarity=0.098 Sum_probs=211.2
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCc---chHHHHHhHHHHHHHHHHHhccch
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRR---RPYFILAGCLGVFSMLLLSMHEKL 141 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~R---k~~ll~~~~~~~~~~~~~~~~~~~ 141 (499)
+....++.|++ ++|.|++++|+..+++.++..+ +|++|+++||++ || ++.+.+.... .....+...++.
T Consensus 22 ~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g----~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 94 (382)
T PRK11128 22 VFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPS----QLIPALRLLALLTLL--FAVAFWFGAHSF 94 (382)
T ss_pred HHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc----chHHHHHHHHHHHHH--HHHHHHHhcccH
Confidence 44445556765 6899999999999999999876 999999999972 22 1222222211 122222334555
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 142 HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 142 ~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
+. +...+++.+++.+...+..+++..+.. ++|++..+..+.+.++|..+||++++++.+++|||..|++.++..
T Consensus 95 ~~--l~i~~~l~g~~~~~~~~~~~a~~~~~~----~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~ 168 (382)
T PRK11128 95 WL--LFVAIGLFNLFFSPLVPLTDALANTWQ----KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV 168 (382)
T ss_pred HH--HHHHHHHHHHHHcccccHHHHHHHHHH----hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 53 334566667766666666777766652 346777777888889999999999999999999999998877544
Q ss_pred HHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChh
Q 041017 222 GLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301 (499)
Q Consensus 222 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 301 (499)
++..+..++.||++++.+++++ .++..+...+.+|+|+++...+..++............+.+.. +.|+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~g~s~~ 240 (382)
T PRK11128 169 ASMLLGQLLRPTIMPQGESRQQ----ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQ----AAGYSAS 240 (382)
T ss_pred HHHHHHHHccCCCCCccccccc----cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHH----HCCCCHh
Confidence 4333333445654322211111 0011223456788998877665544433221111111111212 2688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhh
Q 041017 302 TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLK 381 (499)
Q Consensus 302 ~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (499)
..|.+.....++.+++..+.+++.||++.|+.+..+.+..++..+. ... .++.+..+....+.++..+..
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~l~g~~~~~~ 310 (382)
T PRK11128 241 TIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL-MGS---------TTALPWLIVIQILHCGTFTVC 310 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHh---------hhhHHHHHHHHHHHHHHHHHH
Confidence 8899888888899999999999999999999987776665553221 111 122233333445555555554
Q ss_pred hhHHHHHHHhhCCCChhHHHHHHHHHH-HhhHHHhHHHHHHHHHHHhC
Q 041017 382 WMPLLVLSSRLCPSGIEGTFFALLMSI-DNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 382 ~~p~~~~~~~~~p~~~~g~~~gl~~~~-~~lg~~ig~~l~g~l~~~~g 428 (499)
..+...+..+. +++++++.+++++.. ...|..+||.++|.+.+.+|
T Consensus 311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555666665 566678899988755 45677899999999999875
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=208.05 Aligned_cols=367 Identities=11% Similarity=0.024 Sum_probs=215.1
Q ss_pred cchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHH
Q 041017 45 HWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFIL 123 (499)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~ 123 (499)
.|..++.+.+.+..... +........ +++++ +|+|+++.++..+++.++..+ +++.|+++||+ +||+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~~~~~~~ 96 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYL-VRKNFALAM-PYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-----NPRVFLPA 96 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HhccHHhhh-HHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-----CCceehHH
Confidence 45555555555532222 111223344 35565 599999999999999999876 88999999997 46667777
Q ss_pred HhHHHHHHHHHHHhccch--HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 041017 124 AGCLGVFSMLLLSMHEKL--HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSIS 201 (499)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~ 201 (499)
+.++.+++.+.+++.++. ........+++.+++.+...+.....+.|..+ +++|++++++.+.+.++|..+++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~--~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 97 GLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWS--QSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcC--cccchhHHHHHHHHHHhHhHHHHHHH
Confidence 888878777776654321 11123345667777776666666677778763 46799999999999999999998887
Q ss_pred hHhhc-ccChhHHHHHHHHHHHHH-HHHHhcccCCCCCCc--chh--------h--hhHHHHHHHHHH--HHHccCcchh
Q 041017 202 GIFVH-LIGPKGVFGLMTIPAGLL-ILVGILLNEPQVPDF--NYK--------Q--VNLKFLDAGKAM--WTTLKFPLVW 265 (499)
Q Consensus 202 g~l~~-~~gw~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~--~~~--------~--~~~~~~~~~~~~--~~~l~~~~~~ 265 (499)
+...+ ..+||+.|++.++..++. ++..+++||+++... +.+ + ++.+.+...++. ...+|++.+|
T Consensus 175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T TIGR00712 175 LLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLW 254 (438)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHH
Confidence 76544 569999999988777665 344556677543210 000 0 000000001111 2367888877
Q ss_pred hHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHh
Q 041017 266 RPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSG 345 (499)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~ 345 (499)
...+..++............+.+..+ ..|+|+...++......++.+++.++.+++.||+++++....+........
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 331 (438)
T TIGR00712 255 YIAIANVFVYLLRYGVLDWSPTYLKE---VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH---ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 66554433322111111111122222 267888888888777778888888888988888743321112221111111
Q ss_pred hhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHH-HhHHHHHHHHH
Q 041017 346 MLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGV-LSSSWGGGLLL 424 (499)
Q Consensus 346 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~-~ig~~l~g~l~ 424 (499)
+....+.... ....+.........++..............|.+|++.+|+++|+.+.+.++|+ .++|.+.|.+.
T Consensus 332 ~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~ 406 (438)
T TIGR00712 332 IAVIVYWMNP-----AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 406 (438)
T ss_pred HHHHHHHhcC-----CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH
Confidence 1011111000 00111111111111111111111112456788999999999999999998874 68999999999
Q ss_pred HHhCC
Q 041017 425 HILKV 429 (499)
Q Consensus 425 ~~~g~ 429 (499)
+..|+
T Consensus 407 ~~~g~ 411 (438)
T TIGR00712 407 DFFGW 411 (438)
T ss_pred Hhccc
Confidence 98763
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-22 Score=204.71 Aligned_cols=377 Identities=11% Similarity=0.011 Sum_probs=217.9
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVS 148 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (499)
.++.++++++|+|.+++|++.++..++..+ +|++|.++||+ | |||+.+.++.+...+++....+.++++.+ ..
T Consensus 24 ~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~---g-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 97 (418)
T TIGR00889 24 TLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW---L-SAQKVYAVCHFAGALLLFFAAQVTTPAGM--FP 97 (418)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-ccHHHHHHHHHHHHHHHHHHHHhcCHHHH--HH
Confidence 344577788999999999999999999876 89999999996 3 56777877777777777777777776643 23
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcc----C--CCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHH
Q 041017 149 ALTASSAGIAIADVTIDACVAQNSI----C--HPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAG 222 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv~e~~~----~--~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~ 222 (499)
.+.+.+++.+...+..+++..+... + ++..|.+..| .+|.++|+.++|.+....+|+ .|++.++..+
T Consensus 98 ~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~ 170 (418)
T TIGR00889 98 VLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSA 170 (418)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHH
Confidence 3344455444333344444322111 0 1123444443 478888998888773332344 3555565555
Q ss_pred HHHHHHhcccCCCCCCcchhhhhHHHHHHH-HHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCC----CCCC
Q 041017 223 LLILVGILLNEPQVPDFNYKQVNLKFLDAG-KAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSK----AGPS 297 (499)
Q Consensus 223 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~g 297 (499)
+..+..+++||+++.++++++ +.++.. ....+.+|+|+++...+..++..............+..+.. ..-+
T Consensus 171 ~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 247 (418)
T TIGR00889 171 LLGVFALTLPDIPVAKSTAKM---SIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADS 247 (418)
T ss_pred HHHHHHhcCCCCCCCcccccc---CHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccch
Confidence 554445677887533221111 111111 12235678888766655544432211000000001111100 0002
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHH
Q 041017 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMV 377 (499)
Q Consensus 298 ~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (499)
++....+....+..++.+++.+..+++.||+++|+++..+.++.++..... ..... + .......+....+.++.
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~-~~~~~-~----~~~~~~l~l~~~l~g~~ 321 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFF-AYGDP-E----YFGYALLFLSMIVYGCA 321 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHcCc-c----hhhHHHHHHHHHHHHHH
Confidence 334566777788888999999999999999999999988877666543211 11100 0 00111112223334444
Q ss_pred HHhhhhHHHHHHHhhCCCChhHHHHHHHH-HHHhhHHHhHHHHHHHHHHHhCCcc-cCCChhHHHHHHHHhHhHHHH-HH
Q 041017 378 GQLKWMPLLVLSSRLCPSGIEGTFFALLM-SIDNAGVLSSSWGGGLLLHILKVTR-TQFHNLWLAILIRNILRITPL-CV 454 (499)
Q Consensus 378 ~~~~~~p~~~~~~~~~p~~~~g~~~gl~~-~~~~lg~~ig~~l~g~l~~~~g~~~-~~~~~~~~~~~i~~~~~li~l-~~ 454 (499)
.+........++.|..|++.+|+.+|+.+ ...++|..+||.++|.+.+..|... .+|+..|.. .+++.++.. ..
T Consensus 322 ~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~---~~~~~~i~~~l~ 398 (418)
T TIGR00889 322 FDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF---FAGYIAILAVLF 398 (418)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH---HHHHHHHHHHHH
Confidence 44333344577899999999999999997 5678999999999999999876311 124433433 233333333 33
Q ss_pred HhhcCCCCCCCCCCchhh
Q 041017 455 IFLVPRGDPDTSFLPAEL 472 (499)
Q Consensus 455 ~~~lp~~~~~~~~l~~~~ 472 (499)
.+++|++ +.+.+.+|++
T Consensus 399 ~~~~~~~-~~~~~~~~~~ 415 (418)
T TIGR00889 399 MIFFKYS-HNAIKVDDRD 415 (418)
T ss_pred HHHhCCc-ccCCCCcccc
Confidence 3466665 4333455444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=208.13 Aligned_cols=356 Identities=12% Similarity=-0.003 Sum_probs=214.5
Q ss_pred hhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHH-Hhhhch--h---hh-hhHHhhhccccccCCCCcchHHH
Q 041017 50 LGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYA-GITSLP--W---IV-KPLWGLLTDVLPIFGYRRRPYFI 122 (499)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~-~~~~l~--~---~~-~pl~G~lsD~~~~~g~~Rk~~ll 122 (499)
..+++.+ +.+.+|-...+...+ .++++++.++++.+... +...+. + .+ +++.|+++||+ +||+.++
T Consensus 18 ~~~~~~~-~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Grr~~l~ 90 (434)
T PRK15075 18 LRVTSGN-FLEMFDFFLFGFYAT-AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-----GRRKGLI 90 (434)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-----chHHHHH
Confidence 4444555 677888777777776 56778999888765443 332222 2 23 56789999997 6777888
Q ss_pred HHhHHHHHHHHHHHhccchHHH------HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHH
Q 041017 123 LAGCLGVFSMLLLSMHEKLHLV------FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALI 196 (499)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~l 196 (499)
.+..+..++...++++++++.. .+++.|++.|++.+...+...+++.|..+ +++|++.+++.+.+.++|..+
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p--~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT--PGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC--cccchHHHHHHHHHHHHHHHH
Confidence 8999999999999999886531 24567888999988777767788899884 478999999988888888888
Q ss_pred HHHHHhHh--------hcccChhHHHHHHHHHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHH
Q 041017 197 GYSISGIF--------VHLIGPKGVFGLMTIPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPC 268 (499)
Q Consensus 197 g~~l~g~l--------~~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 268 (499)
++.+++.+ .+.+|||++|++..+...+........||+++..++.+ +.+.++. +.+..++++.+...
T Consensus 169 g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~ 243 (434)
T PRK15075 169 AALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH--RPSMREI---FRSLAANWRIVLAG 243 (434)
T ss_pred HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh--ccccccH---HHHHHHhHHHHHHH
Confidence 88777665 24689999998754332222222223444321110000 0000111 11222333333221
Q ss_pred -HHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhh
Q 041017 269 -LYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGML 347 (499)
Q Consensus 269 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~ 347 (499)
...++............+.+..+ ..|++..+.++......++.+++..+.+++.||+++|+.+..+.+..++..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~ 320 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKT---VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYP 320 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 11111111100000101112222 26888888788777788888899999999999999999877654443321111
Q ss_pred hhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh-HHHhHHHHHHHHHHH
Q 041017 348 DLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA-GVLSSSWGGGLLLHI 426 (499)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~ig~~l~g~l~~~ 426 (499)
....... .+..........+.++..+....+...+..|..|++.||+..|+...+.+. ++.++|.+.|.+.+.
T Consensus 321 ~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 321 ALSWLVA------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred HHHHHHc------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1111100 111111111111122222322223346788999999999999997776665 578899999999998
Q ss_pred hC
Q 041017 427 LK 428 (499)
Q Consensus 427 ~g 428 (499)
.|
T Consensus 395 ~g 396 (434)
T PRK15075 395 TG 396 (434)
T ss_pred cC
Confidence 76
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=201.60 Aligned_cols=318 Identities=23% Similarity=0.215 Sum_probs=228.1
Q ss_pred hccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh
Q 041017 59 SQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM 137 (499)
Q Consensus 59 ~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~ 137 (499)
..+++........+.+. +++|.++++.++..+...++..+ .|+.|+++||+ +||+.++.+..+..++...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-----g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 10 LSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-----GRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CCchhhHHHHHHHHHHHHHHHH
Confidence 33444444555565555 46899999999999999988876 89999999997 5667888898888888888888
Q ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHH
Q 041017 138 HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLM 217 (499)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~ 217 (499)
.++.+. +...+++.+++.+...+...+++.|..++ ++|++..+..+....+|..+++.+++.+.+..+||+.+++.
T Consensus 84 ~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (352)
T cd06174 84 ASSLWL--LLVGRFLLGLGGGALYPAAAALIAEWFPP--KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159 (352)
T ss_pred hccHHH--HHHHHHHHHcccccccHhHHHHHHHhCCc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777653 44567888888888888889999998853 68999999999999999999999999999988999999987
Q ss_pred HHHHHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCC
Q 041017 218 TIPAGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPS 297 (499)
Q Consensus 218 a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 297 (499)
++..++..+...+.+ |+++...+..++............+.+..+. .|
T Consensus 160 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 207 (352)
T cd06174 160 AILGLLLALLLLFLL-----------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV---LG 207 (352)
T ss_pred HHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---cC
Confidence 776665544333333 1112222221111111000001111122221 47
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHH
Q 041017 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQD-VLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRM 376 (499)
Q Consensus 298 ~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~-~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (499)
.++.+.+.......++.+++..+.+++.||.++|+ .+..+.+...+..+... . .++.........+.++
T Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~---------~~~~~~~~~~~~~~g~ 277 (352)
T cd06174 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-L---------APSLALLLVALLLLGF 277 (352)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-H---------hccHHHHHHHHHHHHH
Confidence 88888899888899999999999999999999998 77777666555432211 1 1111222223344455
Q ss_pred HHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 377 VGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 377 ~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
..+.......++..|..|+++|++.+|+.+...++|..++|.+.|.+.+..+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~ 329 (352)
T cd06174 278 GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329 (352)
T ss_pred HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5555555567888999999999999999999999999999999999987544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-21 Score=198.54 Aligned_cols=324 Identities=16% Similarity=0.142 Sum_probs=211.3
Q ss_pred hhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 041017 75 MKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTAS 153 (499)
Q Consensus 75 l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (499)
+++++|.|+++.++..+++.++..+ ++++|+++||+ +||+.++.+..+..++.+.++++++++. ++..+++.
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~l~ 104 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-----GRKPVLLAGLSLFALGSLGMLWVESAAQ--LLVLRFVQ 104 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-----CCcHHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHH
Confidence 5678999999999999999999876 88999999997 6777888888888888888888887764 34566777
Q ss_pred HhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHHhcccC
Q 041017 154 SAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNE 233 (499)
Q Consensus 154 ~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~~~~~e 233 (499)
|++.+...+...+++.|..+ ++++++..+..+....+|..++|.+++.+.+.+|||+.|++.++..++..+..++++|
T Consensus 105 G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 105 AVGVCSAAVIWQALVIDRYP--AQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred HhhhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88877666667778887764 3467777888888889999999999999999999999999887776665444444555
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHH
Q 041017 234 PQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVG 313 (499)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~ 313 (499)
+++++++ + + .....++.+|+|+.+...+...+.......+....+++.. ..|+++.+.|.......++
T Consensus 183 ~~~~~~~-~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~g~s~~~~g~~~~~~~~~ 250 (401)
T PRK11043 183 SKKARKQ-S----Q---DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILE----QMGYSPADIGLSYVPQTIA 250 (401)
T ss_pred CCCcccc-c----h---HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHH----HcCCCHHHHHHHHHHHHHH
Confidence 4332211 1 0 1123456677777654332222111110111111111212 2688888888877777888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhC
Q 041017 314 SILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLC 393 (499)
Q Consensus 314 ~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 393 (499)
.++|+.+.+++.||+++|+......+..++..+....... . ..+.....+....+.++..+..+....+...+..
T Consensus 251 ~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (401)
T PRK11043 251 FLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASL-L----SHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF 325 (401)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-h----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 8999999999999999888665544444333221111111 0 0111111111122223333332322334445555
Q ss_pred CCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 394 PSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 394 p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
| +.+|++.|+.++....+...++.+.|.+.+
T Consensus 326 ~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 326 P-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred c-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5 578999999999988888888888887765
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=209.46 Aligned_cols=245 Identities=11% Similarity=0.015 Sum_probs=152.1
Q ss_pred HHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALT 151 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (499)
+.+++++|+|+++.++..+.+.+++.+ +++.|+++||+ +||+.+..+.++.+++.+++++++++.. +...++
T Consensus 60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----G~r~~~~~~~~~~~~~~~~~~~~~s~~~--l~~~r~ 132 (476)
T PLN00028 60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-----GPRYGSAFLLMLTAPAVFCMSLVSSATG--FIAVRF 132 (476)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHH
Confidence 355778999999999998888888876 78999999997 5667777888888888888888887764 334567
Q ss_pred HHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh----c-----ccChhHHHHHHHHHHH
Q 041017 152 ASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV----H-----LIGPKGVFGLMTIPAG 222 (499)
Q Consensus 152 l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~----~-----~~gw~~~f~~~a~~~~ 222 (499)
+.|++.+.. .+...++.|..+ +++||+++++.+...++|..+++.+.+.+. + ..|||+.|++.+++.+
T Consensus 133 l~G~~~~~~-~~~~~~i~~~~~--~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l 209 (476)
T PLN00028 133 FIGFSLATF-VSCQYWMSTMFN--GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHI 209 (476)
T ss_pred HHHHHHHhh-HHHHHHHHHhcC--hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence 777776643 334456677763 368999999988777777777766654432 1 2589999999888776
Q ss_pred HHHHHHhccc-CCCCCCc-chhhhhH-HHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCC
Q 041017 223 LLILVGILLN-EPQVPDF-NYKQVNL-KFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299 (499)
Q Consensus 223 ~~~~~~~~~~-e~~~~~~-~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 299 (499)
+..+..++++ ++++... +.+++.+ +.++..+.+++.++++++|...+..++............+.+... ..|++
T Consensus 210 ~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~---~~g~s 286 (476)
T PLN00028 210 IMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYD---RFGLS 286 (476)
T ss_pred HHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHH---hcCCC
Confidence 6644433333 3332110 0000000 000112234566788887665443332211111111111112222 26888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 041017 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPF 330 (499)
Q Consensus 300 ~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~ 330 (499)
....+.+.....++.+++.++.|++.||+++
T Consensus 287 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~ 317 (476)
T PLN00028 287 LETAGAIAASFGLMNLFARPAGGYLSDVAAR 317 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8888877766666666676666666665543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=212.26 Aligned_cols=359 Identities=13% Similarity=0.024 Sum_probs=213.7
Q ss_pred ccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc--cchHHHHHHHHHHHHH
Q 041017 78 VQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH--EKLHLVFAVSALTASS 154 (499)
Q Consensus 78 ~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 154 (499)
++|+++++.|++.+.+.+++.+ +++.|+++||+ +||+.+..+.++..++.+++.++ ++.. .+++.+++.|
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~l~~~r~~~G 142 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-----VFKWSIGIGMFLSSVISIVIPWAAGGGIA--LVVFCRVIQG 142 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-----CcchhhHHHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHH
Confidence 6899999999999999999987 88999999997 56677778887777776665443 2333 3456788889
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc-ChhHHHHHHHHHHHHHHHHH-hccc
Q 041017 155 AGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI-GPKGVFGLMTIPAGLLILVG-ILLN 232 (499)
Q Consensus 155 ~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~-gw~~~f~~~a~~~~~~~~~~-~~~~ 232 (499)
++.+...+....++.|..+ +++|++.+++...+..+|.++++++++.+.+.+ |||+.|++.+++.++..+.+ .+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 143 LAQGSVSPATHKIIVKWAP--PKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred HhcccchhhHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 9988888888888888874 368999999999999999999999999999884 99999999888776664443 4455
Q ss_pred CCCCCCcc-hhhhhHHHHHH----------HHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChh
Q 041017 233 EPQVPDFN-YKQVNLKFLDA----------GKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301 (499)
Q Consensus 233 e~~~~~~~-~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 301 (499)
|+|+..++ .+++++..++. ...+.+.+++|.+|...+..+............++.+..+ .+|++..
T Consensus 221 ~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~---~~g~s~~ 297 (465)
T TIGR00894 221 DDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISW---VLRVSGK 297 (465)
T ss_pred CCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCcChH
Confidence 55433221 11111111000 0124566778877766655444332211111111122222 2688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCc-----hhHH--HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 302 TVGFVLSVGPVGSILAAILYQNSLKDYPF-----QDVL--FWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 302 ~~g~~~~~~~i~~i~g~~l~~~~~~~~~~-----r~~l--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
+.|++.....++.+++..+.|++.||..+ ++.. ....+......+..+.. ... .......+....+.
T Consensus 298 ~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~l~ 371 (465)
T TIGR00894 298 ENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYAL-PYL-----SAAFYLTIIILTLA 371 (465)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHc-----CCchHHHHHHHHHH
Confidence 88888766666666666666666654322 1111 11111111100101111 100 01111111112222
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHH
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCV 454 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~ 454 (499)
.+..+...........+..|+ ..|+..|+.+..+++|..++|.+.|.+.+..+ .......+.+.++..+++.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~-----~~~~~~~f~~~~~~~~i~~i~ 445 (465)
T TIGR00894 372 NAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDS-----KNVWLIVFLIMAFVNILCVIF 445 (465)
T ss_pred HHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC-----chHHHHHHHHHHHHHHHHHHH
Confidence 222222222223344566654 88999999999999998888888887765321 112333444555555555544
Q ss_pred HhhcCC
Q 041017 455 IFLVPR 460 (499)
Q Consensus 455 ~~~lp~ 460 (499)
..+.++
T Consensus 446 ~~~~~~ 451 (465)
T TIGR00894 446 YLIFGS 451 (465)
T ss_pred eeeeec
Confidence 444443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=225.82 Aligned_cols=339 Identities=14% Similarity=0.014 Sum_probs=216.7
Q ss_pred hhhccCCCh-hHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHH---HhHHHHHHHHHHHhccchHHHHHHHH
Q 041017 75 MKDVQKVQP-SEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFIL---AGCLGVFSMLLLSMHEKLHLVFAVSA 149 (499)
Q Consensus 75 l~~~~g~s~-~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (499)
+.++.+.+. ...++..+++.+++++ +|+.|.++||+ +||+.+.. +.+...+..+.....++++. +++.
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-----~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~--l~~~ 114 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-----DKAKLAKILKFAEIGIAALAIYGFHLNSVPL--LFAA 114 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--HHHH
Confidence 333444433 4467777888999876 99999999997 45554422 22222222222222355553 4567
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHHh
Q 041017 150 LTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGI 229 (499)
Q Consensus 150 ~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~~ 229 (499)
++++|++.+...+...+++.++.+ +++|++++|+.+++.++|.++||+++|++....+|++.|...++..++.++..+
T Consensus 115 ~~l~gi~~a~~~p~~~a~l~~~~~--~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1140)
T PRK06814 115 LFLMGIHSALFGPIKYSILPDHLN--KDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASL 192 (1140)
T ss_pred HHHHHHHHHhhchHHHHhhHhhcC--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHh
Confidence 889999999998999999999985 468999999999999999999999999999999999998544444444445556
Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHH
Q 041017 230 LLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSV 309 (499)
Q Consensus 230 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 309 (499)
++|+++......+......++....+..+.++|.++...+..++.++....+....+.|..+. +|.++...|++.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~g~~~~~~g~~~~~ 269 (1140)
T PRK06814 193 FIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET---LGGDENVATLFLAV 269 (1140)
T ss_pred hCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---cCCchHHHHHHHHH
Confidence 677654332111100011112223345566788877665544433222111111122232332 68888899999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhh---ccc-c------cCCCchhhHHHHHHHHHHHHH
Q 041017 310 GPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLR---LNL-K------FGIPDFVALVIDEGISRMVGQ 379 (499)
Q Consensus 310 ~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~---~~~-~------~~~~~~~~~~~~~~l~~~~~~ 379 (499)
..++.++|.++.+++.+++..++.+..+.++.++..+........ ... . ...+..+......++.++..+
T Consensus 270 ~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (1140)
T PRK06814 270 FSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGG 349 (1140)
T ss_pred HHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHH
Confidence 999999999999999987776665554444433322211110000 000 0 000222222333444556666
Q ss_pred hhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 380 LKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 380 ~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
+...+..+++.+.+|++.+|+++|+.+.+.++|..+++.++|.+.+
T Consensus 350 ~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 350 LYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666778899999999999999999999999999999999988875
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-22 Score=201.51 Aligned_cols=344 Identities=15% Similarity=0.085 Sum_probs=203.5
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHH---Hhccch
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLL---SMHEKL 141 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~---~~~~~~ 141 (499)
......+.|+++++|.|+++.|++.++..+...+ +|++|+++||+ +||+.++.+....++..... .+.+..
T Consensus 20 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (396)
T TIGR00882 20 AYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-----GLKKHLLWIISGLLVLFAPFFIYVFGPLL 94 (396)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444566678888999999999999999999876 99999999997 45556655544443332221 111211
Q ss_pred ---HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHH
Q 041017 142 ---HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMT 218 (499)
Q Consensus 142 ---~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a 218 (499)
......+.+++.+++.+...+..+++..|..+ +++...+....+.++|.++|+.++|.+.+ .+||..|++.+
T Consensus 95 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~ 169 (396)
T TIGR00882 95 QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR----NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGS 169 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh----hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHH
Confidence 11112233455556655555555555555432 23445566667788999999999987765 59999999887
Q ss_pred HHHHHHHHHHhc-ccCCCCCCcchhh-hhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCC
Q 041017 219 IPAGLLILVGIL-LNEPQVPDFNYKQ-VNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGP 296 (499)
Q Consensus 219 ~~~~~~~~~~~~-~~e~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (499)
+..++..+..+. .||++++++..+. +.++.++..++.++.+|||+++...+..+...............|..+..+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~ 249 (396)
T TIGR00882 170 GFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATP 249 (396)
T ss_pred HHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777665433333 4443222110000 00000112234567888998766554443322211101011112222211113
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHH
Q 041017 297 SFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRM 376 (499)
Q Consensus 297 g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (499)
+.+....|.+.....+...++....+++.||+++|+.+.++.++.++.... ... .++.+..+....+.+.
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~-~~~---------~~~~~~~~~~~~l~g~ 319 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG-SSF---------ATTALEVVILKMLHAF 319 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HHh---------cCChHHHHHHHHHHHH
Confidence 455566788777777888888889999999999999887776655553221 111 1111222222333333
Q ss_pred HHHhhhhHHHHHHHhhCCCChhHHHHHH-HHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 377 VGQLKWMPLLVLSSRLCPSGIEGTFFAL-LMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 377 ~~~~~~~p~~~~~~~~~p~~~~g~~~gl-~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
...........+..+..|++.+++.++. .+...++|+.+++.++|.+.+..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~ 373 (396)
T TIGR00882 320 EVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGF 373 (396)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 3222222233456677888888887776 6778899999999999999998774
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=202.18 Aligned_cols=328 Identities=13% Similarity=0.033 Sum_probs=208.1
Q ss_pred CChhHHHHHHHhhh-----chhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHH------HHHHH
Q 041017 81 VQPSEAQVYAGITS-----LPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHL------VFAVS 148 (499)
Q Consensus 81 ~s~~~~g~~~~~~~-----l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~------~~~~~ 148 (499)
.+.++.+...+... ++..+ +|+.|+++||+ +||+.++.+.++..++...+++++++.. ..++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-----GRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLL 101 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-----hhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHH
Confidence 44566666554332 22233 78899999997 6777888899998888888888887642 13456
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh--------cccChhHHHHHHHHH
Q 041017 149 ALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV--------HLIGPKGVFGLMTIP 220 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~--------~~~gw~~~f~~~a~~ 220 (499)
.+++.|++.+...+...+++.|..+ +++|++..+..+.+..+|.++++.+++.+. +.++||+.|.+.++.
T Consensus 102 ~r~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 179 (394)
T TIGR00883 102 ARLIQGFSLGGEWGGAALYLAEYAP--PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVL 179 (394)
T ss_pred HHHHHHhhccccccccHHHhhhcCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHH
Confidence 7788888888777778888888874 468999999999999999999998876553 357899999886665
Q ss_pred HHHHHHHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcc--hhhHHHHHhhhhhccccccccceeEEecCCCCCCC
Q 041017 221 AGLLILVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPL--VWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSF 298 (499)
Q Consensus 221 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 298 (499)
.++........||+++.++++++. ++..++.++.+++++ ++......++............+++..+ ..|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~ 252 (394)
T TIGR00883 180 VLIGLYLRRNLEETPVFEKAQEKH----KKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQ---TLGL 252 (394)
T ss_pred HHHHHHHHHhcCCChhHHHHHhcc----ccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCC
Confidence 554444445567654332111000 011112334444544 3333333333222111111111222222 2678
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHH
Q 041017 299 SQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVG 378 (499)
Q Consensus 299 s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (499)
++.+.+.......++.+++..+.+++.||+++|+.+.....+..+..+........ .++.........+.++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~ 326 (394)
T TIGR00883 253 SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD------SGSFTLFFFLVLGLALIG 326 (394)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHH
Confidence 88888888778888889999999999999999987765444333322111111100 111122222233444445
Q ss_pred HhhhhHHHHHHHhhCCCChhHHHHHHHHHH-HhhHHHhHHHHHHHHHHHhC
Q 041017 379 QLKWMPLLVLSSRLCPSGIEGTFFALLMSI-DNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 379 ~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~-~~lg~~ig~~l~g~l~~~~g 428 (499)
+....+..+++.|..|++.|++++|+.... ..+|..++|.++|.+.+..|
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 327 GMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 555566678899999999999999985444 55788899999999999876
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-21 Score=197.60 Aligned_cols=341 Identities=10% Similarity=0.022 Sum_probs=220.3
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHH-
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLL- 135 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~- 135 (499)
+..++.........| .+++++|+|+++.|+..+.+.+++.+ +|+.|+++||+ +||+.++.+..+.+++++.+
T Consensus 36 ~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-----G~r~~l~~g~~~~~~~~~l~~ 109 (438)
T PRK10133 36 FLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGLFLYALGAALFW 109 (438)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHH
Confidence 444555555566665 45889999999999999999999987 89999999997 78888999999988888765
Q ss_pred --HhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc-c-----
Q 041017 136 --SMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH-L----- 207 (499)
Q Consensus 136 --~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~-~----- 207 (499)
+.++++.. ++..+++.|+|.+..++..++++.|..+ +++|...++..+....+|..+|+.+++.+.. .
T Consensus 110 ~~~~a~~~~~--ll~~r~l~G~g~g~~~~~~~~~v~~~~~--~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~ 185 (438)
T PRK10133 110 PAAEIMNYTL--FLVGLFIIAAGLGCLETAANPFVTVLGP--ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_pred HHHhcCCHHH--HHHHHHHHHHHHHHHHhhHHHHHHHhCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 34566653 4567899999999999999998887643 2455556888899999999999988876541 0
Q ss_pred --------------------cChhHHHHHHH-HHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchh
Q 041017 208 --------------------IGPKGVFGLMT-IPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVW 265 (499)
Q Consensus 208 --------------------~gw~~~f~~~a-~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (499)
.+||++|+... +..++.++ .....||.+.+++. ++.. .+..+...+.+++|.++
T Consensus 186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~-~~~~---~~~~~~~~~ll~~~~~~ 261 (438)
T PRK10133 186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-DAKQ---GSFSASLSRLARIRHWR 261 (438)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-cccc---cchhhhHHHHHhCchHH
Confidence 24666665433 32222222 23334553221111 1000 11123345677888876
Q ss_pred hHHHHHhhhhhccccccccc-eeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 041017 266 RPCLYMYLSFAVSLNIHEGL-FYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLS 344 (499)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~ 344 (499)
...+..++............ .|+.. +.+|+|+...+.......++.++|.++.+++.||+++|+++..+.++..+.
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~l~~---~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 262 WAVLAQFCYVGAQTACWSYLIRYAVE---EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 55444433322211111111 12112 237899999999988999999999999999999999999887765554443
Q ss_pred hhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 041017 345 GMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLL 424 (499)
Q Consensus 345 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~ 424 (499)
.+. ..+. +... .+....+.+++.+..+.+..+...+..|+ ..+++.++.. +..+|..++|.+.|.+.
T Consensus 339 ~~~-~~~~---------~~~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~ 405 (438)
T PRK10133 339 CLI-SAFA---------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVS 405 (438)
T ss_pred HHH-HHHc---------CChH-HHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHH
Confidence 221 1111 1111 11122334555555555556777777765 3566777775 34467888899999888
Q ss_pred HHhC
Q 041017 425 HILK 428 (499)
Q Consensus 425 ~~~g 428 (499)
+..|
T Consensus 406 ~~~g 409 (438)
T PRK10133 406 DAAG 409 (438)
T ss_pred Hhcc
Confidence 8765
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-20 Score=192.41 Aligned_cols=360 Identities=17% Similarity=0.122 Sum_probs=233.5
Q ss_pred HHHHHhhhchhh-hhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc-cchHHHHHHHHHHHHHhHHHHHHHHH
Q 041017 87 QVYAGITSLPWI-VKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH-EKLHLVFAVSALTASSAGIAIADVTI 164 (499)
Q Consensus 87 g~~~~~~~l~~~-~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~ 164 (499)
+...++..+-.+ +.|+.|.++|+. .+||+++.+...++++++..+.+. ++.+ ....++..+..++.....+.+
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~----~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~-~~~~~l~iia~v~~~~~~vfy 147 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG----GRRKRFLLIFTLLGVLATALLWFVSPGQW-WLALVLFIIANVGYEASNVFY 147 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc----ccchHHHHHHHHHHHHHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444 499999999984 588888888888888888887775 3333 233455567788888899999
Q ss_pred HHHHHhhccCCCC------------------------cccchHHHHHHHHHHHHHHHHHHHhHhhcc--------cChhH
Q 041017 165 DACVAQNSICHPS------------------------LASDMQSLCSLCSAIGALIGYSISGIFVHL--------IGPKG 212 (499)
Q Consensus 165 ~alv~e~~~~~~~------------------------~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~--------~gw~~ 212 (499)
++++.|+++++++ +|++.++.-....++|+++.-.+.-.+... .+-|.
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~ 227 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV 227 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence 9999999975432 038899988888889998877766444321 23477
Q ss_pred HHHHHHHHHHHH-HHHHhcccCCCCCCcchhhhhHHHHHHHHHHH----HHccCcchhhHHHHHhhhhhcccccccccee
Q 041017 213 VFGLMTIPAGLL-ILVGILLNEPQVPDFNYKQVNLKFLDAGKAMW----TTLKFPLVWRPCLYMYLSFAVSLNIHEGLFY 287 (499)
Q Consensus 213 ~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 287 (499)
.+.+.++..++. +...+++||+++++..++ .....+..+++++ +..|.|...+.++..++++-...++......
T Consensus 228 ~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i 306 (477)
T PF11700_consen 228 AFLIVALWWLVFSIPLFLWLPDRPGPRPLPS-GSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGI 306 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776655 556777888766321111 1112233333333 3334566655555545443221111111112
Q ss_pred EEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHHHhhhhhhhhhhcccccCCCchh
Q 041017 288 WYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQ--DVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFV 365 (499)
Q Consensus 288 ~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r--~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 365 (499)
|.+.. +|++..+...+..+..+.+++|+++.+++.||+|.| +++..+.++..+..+..++ .-+....+....+
T Consensus 307 ~a~~~---lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~--G~~~~~~g~~~~~ 381 (477)
T PF11700_consen 307 YATEV---LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLF--GFWPSFFGLKSPW 381 (477)
T ss_pred HHHHh---cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHH--HhhhcccCcccHH
Confidence 33333 899999988888889999999999999999999999 7777766655443322111 0000012233333
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHH
Q 041017 366 ALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRN 445 (499)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~ 445 (499)
-......+.+...+.......++.+|+.|+++++..+|+++...+..+.+||.+.|.+.+..|-. ...+....
T Consensus 382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~-------r~g~~~l~ 454 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ-------RYGFLFLL 454 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------hhHHHHHH
Confidence 23333344455544444455789999999999999999999999999999999999999987622 22233334
Q ss_pred hHhHHHHHHHhhcCCCCCC
Q 041017 446 ILRITPLCVIFLVPRGDPD 464 (499)
Q Consensus 446 ~~~li~l~~~~~lp~~~~~ 464 (499)
++.+++++++++++.+|..
T Consensus 455 ~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 455 VLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHHhhccchhhh
Confidence 4557777777777765543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-22 Score=199.27 Aligned_cols=327 Identities=13% Similarity=0.018 Sum_probs=203.0
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc-chHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE-KLHL 143 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~-~~~~ 143 (499)
......+.++++++|+|+.+.+++.++..+++.+ +|+.|+++||+ +||+.++++.++..++.+.+++++ +++.
T Consensus 19 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (366)
T TIGR00886 19 AFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-----GPRYTTTLSLLLLAIPCLWAGLAVQSYSV 93 (366)
T ss_pred HhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444555457889999999999999999999876 88999999997 677788888888888888888887 7653
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc----------ccChhHH
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH----------LIGPKGV 213 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~----------~~gw~~~ 213 (499)
+...+++.+++.+. ..+..+++.|..+ +++|++..++...+.++|..+++.+++.+.. +.+||+.
T Consensus 94 --~~~~~~~~g~~~~~-~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~ 168 (366)
T TIGR00886 94 --LLLLRLFIGIAGGS-FASCMPWISFFFP--KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWA 168 (366)
T ss_pred --HHHHHHHHHHhchh-hHhHHHHHHHhcC--HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccch
Confidence 34566777777554 3446677788763 4689999999887777888888777766554 3489999
Q ss_pred HHH-HHHHHHHH-HHHHhcccCCCCCCcchhhhh-H-----HHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccc
Q 041017 214 FGL-MTIPAGLL-ILVGILLNEPQVPDFNYKQVN-L-----KFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGL 285 (499)
Q Consensus 214 f~~-~a~~~~~~-~~~~~~~~e~~~~~~~~~~~~-~-----~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 285 (499)
|++ .++...+. .+.....+|+++.+++.++.. + ..++..+..++.+++|+++...+..++............
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (366)
T TIGR00886 169 FVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIF 248 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 844 34444333 333444555443221110000 0 001111244567788887665544333221111111111
Q ss_pred eeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchh
Q 041017 286 FYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFV 365 (499)
Q Consensus 286 ~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 365 (499)
+++..+. +|+++.+.+.+.....+..+++..+.+++.||+++|+.+..+.......... +.+.... .....
T Consensus 249 ~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~ 319 (366)
T TIGR00886 249 AMFFKDQ---FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFL-VVLGLVS-----PLSLA 319 (366)
T ss_pred HHHHHHH---cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHH-HHhcCCC-----cchHH
Confidence 2222222 6888888888877778888889999999999999887766655444432221 1111100 00111
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhH
Q 041017 366 ALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAG 412 (499)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg 412 (499)
.......+..+..+....+..+...+..| +++|+.+|+.++++++|
T Consensus 320 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 320 VFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 11111122223333333444566677776 68999999999998876
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-20 Score=190.80 Aligned_cols=325 Identities=7% Similarity=0.019 Sum_probs=195.9
Q ss_pred HhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc-----cchHHHHHH
Q 041017 74 YMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH-----EKLHLVFAV 147 (499)
Q Consensus 74 ~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~-----~~~~~~~~~ 147 (499)
+.++++|+|++|.+++.++..+.+.+ +.+.|++.||+ +.|+++.++.++..+.++.++++ ++++. ++
T Consensus 60 ~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-----G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~--ll 132 (462)
T PRK15034 60 LNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-----GGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGI--FI 132 (462)
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHHHcccCCCHHH--HH
Confidence 33447999999999999999988876 67889999997 45556777777778888888875 56553 45
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh-----c-------------ccC
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV-----H-------------LIG 209 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~-----~-------------~~g 209 (499)
+.+++.|++ +...+.....+.+..+ +++||++.|+.....++|..+++++...+. . ..+
T Consensus 133 i~r~l~Gig-g~~f~~~~~~vs~wfp--~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~ 209 (462)
T PRK15034 133 VIALLCGFA-GANFASSMGNISFFFP--KAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS 209 (462)
T ss_pred HHHHHHHHH-HHhHHHHHHHHHHHCC--HhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence 566777777 4455556666776663 367999999987666677766655554322 2 233
Q ss_pred hhHHHHHHHHHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeE
Q 041017 210 PKGVFGLMTIPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYW 288 (499)
Q Consensus 210 w~~~f~~~a~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 288 (499)
||.+.++..++.++..+ .+++.++.+..+. ..++..+.+|+|+.|...++.++....+.......+++
T Consensus 210 ~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~-----------~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~ 278 (462)
T PRK15034 210 LANAAWIWVPLLAIATIAAWSGMNDIASSRA-----------SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAML 278 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccc-----------CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666665555544433 3444444332111 12344568899999887765554332211111112222
Q ss_pred EecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHH
Q 041017 289 YTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALV 368 (499)
Q Consensus 289 ~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 368 (499)
..+ .++............+...++.++.|++.||+|.++++.++.+..++.........+..+ ..+...+..
T Consensus 279 ~~~-----~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~---~~~~~~~~~ 350 (462)
T PRK15034 279 AKT-----QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTG---SGNFIAFYA 350 (462)
T ss_pred HHH-----HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcccc---ccHHHHHHH
Confidence 222 122222222223445666677788999999999999998887766654332222211100 001111111
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhCCC---------------------ChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHh
Q 041017 369 IDEGISRMVGQLKWMPLLVLSSRLCPS---------------------GIEGTFFALLMSIDNAGVLSSSWGGGLLLHIL 427 (499)
Q Consensus 369 ~~~~l~~~~~~~~~~p~~~~~~~~~p~---------------------~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~ 427 (499)
. .....+..++......-++.+++|+ ++.|.+.|+.+..+.+|+.+-|.+-|...+..
T Consensus 351 ~-~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~ 429 (462)
T PRK15034 351 V-FMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT 429 (462)
T ss_pred H-HHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc
Confidence 1 1112233344443444555666663 15788999999999999999898888777765
Q ss_pred C
Q 041017 428 K 428 (499)
Q Consensus 428 g 428 (499)
|
T Consensus 430 g 430 (462)
T PRK15034 430 G 430 (462)
T ss_pred C
Confidence 4
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=192.86 Aligned_cols=382 Identities=14% Similarity=0.133 Sum_probs=252.7
Q ss_pred hhccC--CChhHHH----HHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH-HHHHH
Q 041017 76 KDVQK--VQPSEAQ----VYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH-LVFAV 147 (499)
Q Consensus 76 ~~~~g--~s~~~~g----~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~ 147 (499)
.+.+| ++.++.. ...+++.+|.++ ..+.|+++||+ +||..++++.++..++.+++.++.... ...++
T Consensus 46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~-----GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li 120 (485)
T KOG0569|consen 46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF-----GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLI 120 (485)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34566 5555444 445666777777 67799999986 677888888877777766665543221 12467
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhH-hh-cccChhHHHHHHHHHHHHHH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGI-FV-HLIGPKGVFGLMTIPAGLLI 225 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~-l~-~~~gw~~~f~~~a~~~~~~~ 225 (499)
..|++.|+..+.......-++.|.+|. +.||.+..+...+..+|.+++..++.. +. +.-.|++.+....++.++.+
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~--~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l 198 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPK--NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL 198 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChh--hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence 889999999999888888899999854 689999999999999999999877753 33 34569999888888887778
Q ss_pred HHHhcccCCCCCCc----chhhh-------------hHH-------HHH------HHHHHHHHccCcchhhHHHHHhhhh
Q 041017 226 LVGILLNEPQVPDF----NYKQV-------------NLK-------FLD------AGKAMWTTLKFPLVWRPCLYMYLSF 275 (499)
Q Consensus 226 ~~~~~~~e~~~~~~----~~~~~-------------~~~-------~~~------~~~~~~~~l~~~~~~~~~l~~~~~~ 275 (499)
+...++||+|++.- +.++. +++ .++ ....+++.++||..++.+...+...
T Consensus 199 ~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~ 278 (485)
T KOG0569|consen 199 ALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVS 278 (485)
T ss_pred HHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHH
Confidence 88889999998531 10000 000 000 1113567888887766543333222
Q ss_pred hcc-ccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhh
Q 041017 276 AVS-LNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLR 354 (499)
Q Consensus 276 ~~~-~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~ 354 (499)
..+ .....+..+|.++..+..|+++...-+.+...++..++..++...+.||.|||++++.+..++.+..+........
T Consensus 279 ~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l 358 (485)
T KOG0569|consen 279 FAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFL 358 (485)
T ss_pred HHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1111223344444333368888877788877788888888888889999999999999888887765543322211
Q ss_pred cccccCCCchh-hHHHHHHHHHHHHHhhhhHH-HHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCccc
Q 041017 355 LNLKFGIPDFV-ALVIDEGISRMVGQLKWMPL-LVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRT 432 (499)
Q Consensus 355 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~p~-~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~ 432 (499)
.+. .+ +... ..++..+++.+..++...|. +-+.+|++|++.|+++++....+..++..+-......+.+.+|-
T Consensus 359 ~~~-~~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--- 433 (485)
T KOG0569|consen 359 SNS-FG-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--- 433 (485)
T ss_pred HHH-hh-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 111 01 1111 12233344455555555565 35788999999999999999998888877777777777777651
Q ss_pred CCChhHHHHHHHHhHhHHHHHHHh-hcCCCCCCCC-CCchhhhhh
Q 041017 433 QFHNLWLAILIRNILRITPLCVIF-LVPRGDPDTS-FLPAELESK 475 (499)
Q Consensus 433 ~~~~~~~~~~i~~~~~li~l~~~~-~lp~~~~~~~-~l~~~~~~~ 475 (499)
..+++..+.+++..++++ .+||||.++- ++.++.++.
T Consensus 434 ------~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 434 ------YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred ------hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 233444455555555554 9999997655 666666655
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-19 Score=178.96 Aligned_cols=367 Identities=15% Similarity=0.141 Sum_probs=247.8
Q ss_pred hhccCCChhHHHHHHHhhhchhhhhhHHhhhccccc-cCCCCcchHHHHHhHHHHHHHHHHHhc-----c-------chH
Q 041017 76 KDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLP-IFGYRRRPYFILAGCLGVFSMLLLSMH-----E-------KLH 142 (499)
Q Consensus 76 ~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~~-~~g~~Rk~~ll~~~~~~~~~~~~~~~~-----~-------~~~ 142 (499)
-.|+++++.-.+...++..+-.-++|.+|..||+.| .+|+||.||++.+..+.+.+.....++ . +.+
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 357899988888777666555556888999999999 899999999999999888766555442 2 122
Q ss_pred H--HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHH--
Q 041017 143 L--VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMT-- 218 (499)
Q Consensus 143 ~--~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a-- 218 (499)
. ......+.+.|+|.+...++..++++|.++ |++|+++.++.+.+..+|.+++..+.|.+.+.++.....-+..
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~--e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAP--EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 1 233445577899999999999999999984 5789999999999999999999999999998877544333322
Q ss_pred -HHHHHHHHHHhcccCCCCCCcc--hhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhcccccccc-ceeEEecCCC
Q 041017 219 -IPAGLLILVGILLNEPQVPDFN--YKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEG-LFYWYTDSKA 294 (499)
Q Consensus 219 -~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~ 294 (499)
+..+.+.++..+-.|++..+.. .+++..++++..+++ ..+|+.+++..+.++..+.+ +.... +-.|-.+.
T Consensus 165 a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~---~~~~~a~~f~~fl~l~t~a~-~~QD~iLEPygg~V-- 238 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQV---WASPQARRFFVFLFLGTLAF-FMQDVILEPYGGEV-- 238 (403)
T ss_pred HHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHH---HhCCChhHHHHHHHHHHHHH-HhhHHHcCCchhHH--
Confidence 2222222233334454433322 112223344444444 46888888877777654432 22221 22333333
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLK-DYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGI 373 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~-~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 373 (499)
+|++..+...++.....|.++|-.+.+++.. |.++++.-.+++..++++... +++... ..+.+.......+
T Consensus 239 -fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l-ii~a~~------~~~~~~~~~~~~l 310 (403)
T PF03209_consen 239 -FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL-IILAGP------LGSPWLFRPGVFL 310 (403)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH-HHHHHh------cccchHHHHHHHH
Confidence 8899998889988888999999988888876 567777777777666665432 222111 1122333333455
Q ss_pred HHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCccc--CCChhHHHHHHHHhHhHHH
Q 041017 374 SRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRT--QFHNLWLAILIRNILRITP 451 (499)
Q Consensus 374 ~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~--~~~~~~~~~~i~~~~~li~ 451 (499)
.++.+++......+.+.++.++++.|+.+|.+...+.++..++..++|.+.|....-.. ....+..++.+.++..+++
T Consensus 311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a 390 (403)
T PF03209_consen 311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAA 390 (403)
T ss_pred HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 66777776666778889999999999999999999999999999999999986432222 2233344556666665666
Q ss_pred HHHHhhc
Q 041017 452 LCVIFLV 458 (499)
Q Consensus 452 l~~~~~l 458 (499)
+.++..+
T Consensus 391 ~~ll~~l 397 (403)
T PF03209_consen 391 LVLLGRL 397 (403)
T ss_pred HHHHHHh
Confidence 5555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-21 Score=219.94 Aligned_cols=331 Identities=14% Similarity=0.088 Sum_probs=213.8
Q ss_pred HHhhhccCCCh--hHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH---hccchHHHHH
Q 041017 73 YYMKDVQKVQP--SEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS---MHEKLHLVFA 146 (499)
Q Consensus 73 ~~l~~~~g~s~--~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~---~~~~~~~~~~ 146 (499)
.++..+++.+. ...+++.+++.+++.+ +|++|+++||+ +||+.++++.++.+++.+++. ..++++ .+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-----grk~~l~~~~~~~~~~~~~~~~~~~~~~~~--~l 106 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-----SKNRVIRIVKLFEVGLTLLIVLAYYLGWFW--LA 106 (1146)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHccHH--HH
Confidence 34444555543 4468888888999876 89999999997 677777777665554444333 234444 34
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc--------c-ChhHHHHHH
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL--------I-GPKGVFGLM 217 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~--------~-gw~~~f~~~ 217 (499)
++.+++.|++.+...+...+++.|+.+ +++|++++++...+.++|.++|+++++++.+. + +|++.+.+.
T Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 184 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKYGIIPELVG--KENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV 184 (1146)
T ss_pred HHHHHHHHHHHHhhchHHHhhhHHhcC--cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence 567788899999888888899999984 36899999999999999999999999998875 2 344444443
Q ss_pred HHHHHHH-HHHHhcccCCCCCCcch--hhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCC
Q 041017 218 TIPAGLL-ILVGILLNEPQVPDFNY--KQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKA 294 (499)
Q Consensus 218 a~~~~~~-~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (499)
.+...++ +++.+.+||.+...... ++.....++..+.+..++++|.++..++..++...........++++....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 262 (1146)
T PRK08633 185 LLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-- 262 (1146)
T ss_pred HHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--
Confidence 3333322 34445567765433211 000001112223344566777766554433332221111111112222222
Q ss_pred CCCCChh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHH
Q 041017 295 GPSFSQE-TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGI 373 (499)
Q Consensus 295 ~~g~s~~-~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 373 (499)
+|++.. ..|++.....++.++|.++.+++.+|+++++.+.++.++.+++.+. +... +..+..+....+
T Consensus 263 -~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~ 331 (1146)
T PRK08633 263 -LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFL-LPTA---------PSLASVLVLFFL 331 (1146)
T ss_pred -hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHH-HHHh---------hhHHHHHHHHHH
Confidence 678887 8888888888999999999999999999888776665555443221 1111 111222223344
Q ss_pred HHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 374 SRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 374 ~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
.++..++...+..+++.+..|++.+|+++|+.+.+.++|..+++.+++.+..
T Consensus 332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566667888899999999999999999999999888888776654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-20 Score=189.88 Aligned_cols=339 Identities=10% Similarity=0.056 Sum_probs=217.6
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+..|+..++.....+ .+++++|+|+++.|++.+...+++.+ .|+.|++.||+ +||+.++.+..+.+++...+.
T Consensus 13 ~~~G~~~~~~~~l~~-~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-----G~r~~~~~g~~l~~~g~~l~~ 86 (410)
T TIGR00885 13 ALWGFANDITNPMVP-QFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-----SYKAGILLGLFLYALGAFLFW 86 (410)
T ss_pred HHHHHHHHhHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHH
Confidence 455555555555655 45789999999999999999999887 88999999997 678888889888888877654
Q ss_pred hc---cchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc------
Q 041017 137 MH---EKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL------ 207 (499)
Q Consensus 137 ~~---~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~------ 207 (499)
.+ ++++ .++..+++.|+|.+..++..++++.+..+ +++|++.+++.+...++|..+|+.+++.+...
T Consensus 87 ~~~~~~~~~--~~l~~~~l~G~g~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 87 PAAEIMNYT--LFLVGLFILTAGLGFLETAANPYILVMGP--ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHhhccHH--HHHHHHHHHHhhHHHHHhhhhHHHHHHCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 43 3443 34567788999999998888888888764 35688889999999999999999998877422
Q ss_pred --------------------cChhHHHHHHHHHHHHHHHHHhc--ccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchh
Q 041017 208 --------------------IGPKGVFGLMTIPAGLLILVGIL--LNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVW 265 (499)
Q Consensus 208 --------------------~gw~~~f~~~a~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (499)
.+||++|.+.+++.++..+...+ .||.++.++ + +++.++ ...+.+|+|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~--~--~~~~~~---~~~~~~~~~~~~ 235 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDA--K--QISFSA---SLSRLARIRHYR 235 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--c--cccchh---hHHHHHhChhHH
Confidence 36999999888766655333322 343221111 1 011111 223556788877
Q ss_pred hHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHh
Q 041017 266 RPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSG 345 (499)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~ 345 (499)
...+..|++..........+..|..+ .+.+.+....+........+..+|.++.+++.||.+.|+.+.++.+..++..
T Consensus 236 ~~~l~~f~yvg~e~~~~s~l~~y~~~--~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ 313 (410)
T TIGR00885 236 EGVIAQFFYVGVQIMCWTFIIQYAVR--LIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALC 313 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 66666665433321111111111111 1124444433434444446677888888999999999998877766666543
Q ss_pred hhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 346 MLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 346 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
+... .. +...... ...+.++.....+....++..+..+++.+....++.+++ +|+.+.|.+.|.+.|
T Consensus 314 ll~~-~~---------~~~~~~~-~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 314 LGSI-FA---------GGHVGLY-CLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIID 380 (410)
T ss_pred HHHH-Hc---------CChHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHH
Confidence 3211 11 1111111 112233444444534467778888877665455555544 899999999999999
Q ss_pred HhC
Q 041017 426 ILK 428 (499)
Q Consensus 426 ~~g 428 (499)
..|
T Consensus 381 ~~~ 383 (410)
T TIGR00885 381 MKE 383 (410)
T ss_pred Hhc
Confidence 754
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-20 Score=185.74 Aligned_cols=334 Identities=17% Similarity=0.167 Sum_probs=212.0
Q ss_pred HHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHH
Q 041017 71 TQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSA 149 (499)
Q Consensus 71 ~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (499)
.+.|++ +.|+|++|+|.+.++..+...+ .|++|.++||. .++|+.+.++.++.++........++++.. +..
T Consensus 25 ~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~----~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~--~~~ 97 (400)
T PF03825_consen 25 LPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRF----GSAKRILALLSLLSALALLLLAFSSSFWWL--FVI 97 (400)
T ss_pred HHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhHHHHHHHHHHHHHHHHHHHHHhccHHHH--HHH
Confidence 345776 5799999999999988888776 67899999996 356777777777777666666666666532 223
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHH-HhHhhcccCh---hHHHHHHHHHHHHHH
Q 041017 150 LTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSI-SGIFVHLIGP---KGVFGLMTIPAGLLI 225 (499)
Q Consensus 150 ~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l-~g~l~~~~gw---~~~f~~~a~~~~~~~ 225 (499)
.++..+......+..|++..+..++++++-| -...+.++|.+++... ++.+....++ ...+++.+...++..
T Consensus 98 ~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG----~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~ 173 (400)
T PF03825_consen 98 MLLFSFFFSPTMPLSDSIALSYLGDRGKDYG----RIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA 173 (400)
T ss_pred HHHHHHHHccHHHHHHHHHHHHcccccCCCC----cchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH
Confidence 3444555555666778887776653333333 3455677777777544 2333332222 234555555444444
Q ss_pred HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCC-CChhHHH
Q 041017 226 LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPS-FSQETVG 304 (499)
Q Consensus 226 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g 304 (499)
...+.+|+.+++++.+++.+ ++..++.++++|||++...++..++.+.....++.-...|..+ .| ++....|
T Consensus 174 ~~~l~lp~~~~~~~~~~~~~---~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~----~gg~~~~~~g 246 (400)
T PF03825_consen 174 GFALFLPKTPPKRSAKESVK---KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQE----LGGYSGSTIG 246 (400)
T ss_pred HHHHhCCCCccccccCCCcc---cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cccchhhHHH
Confidence 44556777653222111110 1122344688999998766666555443211111101111122 45 6667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhH---HHHHHHHHHHHHhh
Q 041017 305 FVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVAL---VIDEGISRMVGQLK 381 (499)
Q Consensus 305 ~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 381 (499)
.+..++.++.++--+..+|+.+|++.++++.++.+..++=. .+... ...|..... +....+++...+..
T Consensus 247 ~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~----~l~a~----~~~~~~~~~~~~~l~q~lhG~tf~~~ 318 (400)
T PF03825_consen 247 ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRW----LLYAY----FSDPWPFIVALQLLGQLLHGLTFGLF 318 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHH----hcCCcHHHHHHHHHHHhhhhHHHHHH
Confidence 87788889999999999999999999999888776655411 11100 001211111 11234567777777
Q ss_pred hhHHHHHHHhhCCCChhHHHHHHHHHHH-hhHHHhHHHHHHHHHHHhCCc
Q 041017 382 WMPLLVLSSRLCPSGIEGTFFALLMSID-NAGVLSSSWGGGLLLHILKVT 430 (499)
Q Consensus 382 ~~p~~~~~~~~~p~~~~g~~~gl~~~~~-~lg~~ig~~l~g~l~~~~g~~ 430 (499)
+.....++.+.+|++.|+++.|+++.+. .+|..+|..++|++.+.+|..
T Consensus 319 ~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 319 HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 7777889999999999999999999876 579999999999999998854
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=187.98 Aligned_cols=325 Identities=14% Similarity=0.059 Sum_probs=206.6
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAV 147 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (499)
...+ .+++++|+|+++.|+..++..+++.+ +|+.|+++||+ +||+.+.++.+...++.+.+ ..++.+. ++
T Consensus 21 ~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~-~~~~~~~--l~ 91 (355)
T TIGR00896 21 PLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-----GEERSVAAGLLLIAAGILIR-SAPGTAL--LF 91 (355)
T ss_pred ccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CchHHHHHHHHHHHHHHHHH-HhccHHH--HH
Confidence 3444 45678999999999999999999887 88999999997 56677777877777666655 5566553 34
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc--ChhHHHHHHHHHHHHHH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI--GPKGVFGLMTIPAGLLI 225 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~--gw~~~f~~~a~~~~~~~ 225 (499)
..+++.+++.+...+...+++.|.. +++|+++.+..+.+.++|..+++.+++.+.+.. +||+.|.+.++..++..
T Consensus 92 ~~~~~~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~ 168 (355)
T TIGR00896 92 AGTALIGVGIAIINVLLPSLIKRDF---PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL 168 (355)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhC---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 5677788888776666666666654 357999999999999999999999998887764 39998877665443322
Q ss_pred HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHH
Q 041017 226 LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGF 305 (499)
Q Consensus 226 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 305 (499)
. .++||.++++++.++. . .+..++.+|+|.++...+..++....+.......+.+..+ .|++..+.+.
T Consensus 169 ~--~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~----~g~~~~~~g~ 236 (355)
T TIGR00896 169 L--AWIPQVRRRVAANQTT-T-----RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS----HGASAATAGS 236 (355)
T ss_pred H--HHhhhhccccCCCCCC-C-----CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHH
Confidence 2 2344433222111000 0 0112345677776655443333222111111111122222 5788888898
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhH
Q 041017 306 VLSVGPVGSILAAILYQNSLKDYP-FQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMP 384 (499)
Q Consensus 306 ~~~~~~i~~i~g~~l~~~~~~~~~-~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 384 (499)
+.....++.+++.++.+++.||++ +|+.+..+.++.+++.+. +..... ..... ...+.++..+.....
T Consensus 237 ~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~--~~~l~g~~~g~~~~~ 305 (355)
T TIGR00896 237 LLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCG-LLFAPM--------HGLWA--WALVLGLGQGGAFPL 305 (355)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH-HHHhhh--------hHHHH--HHHHHHHhhhhHhHH
Confidence 888889999999999999999994 455555544444443221 111110 11111 112233333332222
Q ss_pred HHHHHHhh-CCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 385 LLVLSSRL-CPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 385 ~~~~~~~~-~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
..+...+. .+++.+++.+++.+.+.+++..++|.+.|.+.+..|
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23444433 445677999999999999999999999999999875
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=184.54 Aligned_cols=384 Identities=16% Similarity=0.145 Sum_probs=229.7
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhh-hhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH--
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWI-VKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH-- 142 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~-~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~-- 142 (499)
+.....++|+ +++|+++.+.+.+..+..+... .+|++|.+|||.+.+.+|||++++.+.+..+++...++++++..
T Consensus 22 l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~ 100 (477)
T TIGR01301 22 LQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHL 100 (477)
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 4444555665 4799999999999888777655 49999999998654445888888887888887877777765431
Q ss_pred -------------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHh--hcc
Q 041017 143 -------------LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIF--VHL 207 (499)
Q Consensus 143 -------------~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l--~~~ 207 (499)
...++....+..++......+..++++|+.++++++++.+.++.+.+.++|.++|+.+++.. .+.
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~ 180 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI 180 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 01223333444566777777889999999975444456788989999999999999998865 221
Q ss_pred c-------------ChhHHHHHHHHHHHHH-HHHHhcccCCCCCCcch-------hhhhHHHHHHHHHHHHHccC--cch
Q 041017 208 I-------------GPKGVFGLMTIPAGLL-ILVGILLNEPQVPDFNY-------KQVNLKFLDAGKAMWTTLKF--PLV 264 (499)
Q Consensus 208 ~-------------gw~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~--~~~ 264 (499)
+ +.|.+|++.++..++. .+.++.+||++...++. +.++.+.++.++++++.+|+ |..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m 260 (477)
T TIGR01301 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPV 260 (477)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHH
Confidence 1 4578898877766555 45667789875321110 00001112234455555554 345
Q ss_pred hhHHHHHhhhhhccccccccceeEEecC--CCCCC--------CChh-HHHHH-HHHHHHHHHHHHHHHHHHhCCCCc-h
Q 041017 265 WRPCLYMYLSFAVSLNIHEGLFYWYTDS--KAGPS--------FSQE-TVGFV-LSVGPVGSILAAILYQNSLKDYPF-Q 331 (499)
Q Consensus 265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~g--------~s~~-~~g~~-~~~~~i~~i~g~~l~~~~~~~~~~-r 331 (499)
++..+..+++.+..+.+ . +|.++. ++.++ +++. +.|.. ....++...+.+++..++.|+++. |
T Consensus 261 ~~l~~vqffsW~a~f~~---~-~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k 336 (477)
T TIGR01301 261 WILLLVTCLNWIAWFPF---I-LFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK 336 (477)
T ss_pred HHHHHHHHHHHHHHHHH---H-HhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 66666666654432111 1 111211 00011 1111 12333 334555556777788889999985 5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhc--c--------cccCCCc---hhhHHHHHHHHHH-HHHhhhhHHHHHHHhhCCC--
Q 041017 332 DVLFWAQLLSGLSGMLDLLLVLRL--N--------LKFGIPD---FVALVIDEGISRM-VGQLKWMPLLVLSSRLCPS-- 395 (499)
Q Consensus 332 ~~l~~~~~~~~~~~l~~~~l~~~~--~--------~~~~~~~---~~~~~~~~~l~~~-~~~~~~~p~~~~~~~~~p~-- 395 (499)
+....+.++.+++.... .+...+ | ..+ .+. ....+......++ ......+|+ +++++..|+
T Consensus 337 ~~~~~s~~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPf-al~s~~~~~~~ 413 (477)
T TIGR01301 337 RLWGIVNIILAICLAAT-VLVTYVAKNSRYYDGDGESL-PPPTGIKASALIVFAILGIPLAITYSIPF-ALASIRSSNLG 413 (477)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHhhhhcccccccccccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhH-HHHHHHccccC
Confidence 66677766666543322 222210 0 000 111 1222222222222 223345564 566777774
Q ss_pred ChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHH-hhcCCCCC
Q 041017 396 GIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVI-FLVPRGDP 463 (499)
Q Consensus 396 ~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~-~~lp~~~~ 463 (499)
+..|..+|+.|.+..+.+.+.....|.+.+.+|-++ ...+.+.++..+++.++. +++|+.+.
T Consensus 414 ~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~------~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 414 AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGN------LPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 566999999999999999999998888777776321 123455566666655554 58898765
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-20 Score=192.23 Aligned_cols=349 Identities=11% Similarity=0.065 Sum_probs=199.4
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhc-hhhhhhHHhhhccc-cccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSL-PWIVKPLWGLLTDV-LPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVF 145 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l-~~~~~pl~G~lsD~-~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 145 (499)
...+..|+++++|++.++.+++.+.+.. .+...|+.|+++|| + +||+.++++.++..++.+.++++++....
T Consensus 34 ~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~-----G~r~~~~~g~~~~~~g~~~~~~~~~~~~l- 107 (489)
T PRK10207 34 QGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL-----GTKRTIVLGAIVLAIGYFMTGMSLLKPDL- 107 (489)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhcc-----chHHHHHHHHHHHHHHHHHHHHhccchhH-
Confidence 3344567888999999999998888764 45567889999998 5 78888999999999999888887654432
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLI 225 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~ 225 (499)
+...+.++++|.+...+...+++.|..++++++|++..++.+.+.++|..+||.+++++.+++|||+.|++.++...+.+
T Consensus 108 l~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 108 IFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIAL 187 (489)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 23456777888887777778899998865434667789999999999999999999999999999999988654332222
Q ss_pred HHHhccc----CCC-CCCcchhhhhHHH----------------HH--HH--------------------HHHHHHccCc
Q 041017 226 LVGILLN----EPQ-VPDFNYKQVNLKF----------------LD--AG--------------------KAMWTTLKFP 262 (499)
Q Consensus 226 ~~~~~~~----e~~-~~~~~~~~~~~~~----------------~~--~~--------------------~~~~~~l~~~ 262 (499)
+.+...+ +.+ ++.+++.+..... .+ .. +...+.+|+|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r 267 (489)
T PRK10207 188 LVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNK 267 (489)
T ss_pred HHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 2222222 211 1111000000000 00 00 0000123333
Q ss_pred chhhHHHH--HhhhhhccccccccceeEEec-CC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchh------
Q 041017 263 LVWRPCLY--MYLSFAVSLNIHEGLFYWYTD-SK-AGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQD------ 332 (499)
Q Consensus 263 ~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~-~~-~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~------ 332 (499)
.+....++ ..+....+.+....+..+..+ .. +..|+.. ..+.+.....+..++.+.+.+++.+|.++|+
T Consensus 268 ~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~ 346 (489)
T PRK10207 268 MFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMP 346 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcH
Confidence 32222211 111111111111111122221 11 1112221 1122323333444455555566666665554
Q ss_pred -HHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh
Q 041017 333 -VLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA 411 (499)
Q Consensus 333 -~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l 411 (499)
-+.++.++.+++.+............-+....++.+....+.+....+...+..+.+.+.+|++.+|.++|+++...++
T Consensus 347 ~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~i 426 (489)
T PRK10207 347 MKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAA 426 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 2445545544432211100000000001112233333344555555555666678899999999999999999999999
Q ss_pred HHHhHHHHHHHH
Q 041017 412 GVLSSSWGGGLL 423 (499)
Q Consensus 412 g~~ig~~l~g~l 423 (499)
|..+|..++...
T Consensus 427 g~~lg~~l~~~~ 438 (489)
T PRK10207 427 AFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHh
Confidence 988887777654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-22 Score=197.82 Aligned_cols=356 Identities=15% Similarity=0.147 Sum_probs=224.5
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
.++-.|....+... +-.++.+|++++..|++.+...+.+.+ .|+.|+++||+ +||..|.+|..+..++.++++
T Consensus 43 lmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-----NR~~v~~vG~~iW~~Av~~~~ 116 (493)
T KOG1330|consen 43 LMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-----NRKRVIAVGIFIWTLAVFASG 116 (493)
T ss_pred HHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-----CcceEEeeHHHHHHHHHHHHH
Confidence 34444433333333 345678999999999999999998876 99999999996 899999999999999999999
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhHHHH
Q 041017 137 MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKGVFG 215 (499)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~ 215 (499)
++..+++ ++++|.+.|+|-+...++..++++|..++ ++|+++.++++.+..+|..+|.+.++.+....+ |||.|+
T Consensus 117 fs~~Fwq--~~l~R~~vGiGeAs~~~ia~s~IaD~f~~--~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 117 FSNHFWQ--VLLCRGFVGIGEASYSPIAPSLIADSFPD--DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHH--HHHHHHHhccchhhhcccchhHhhhcCcc--hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 9977764 46788899999999999999999999854 689999999999999999999999988887655 999999
Q ss_pred HHHHHHHHH-HHHHhcccCCCCCCcc-hhhhh---HHHHHHHHHHHHHccCcchhhHHHHHhhhhhcc--ccccccc-ee
Q 041017 216 LMTIPAGLL-ILVGILLNEPQVPDFN-YKQVN---LKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVS--LNIHEGL-FY 287 (499)
Q Consensus 216 ~~a~~~~~~-~~~~~~~~e~~~~~~~-~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~ 287 (499)
..++.++++ ++..++.+|+++...+ .+++. .+.....++++...|+|.+....+....++... ..++... .|
T Consensus 193 ~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~ 272 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIY 272 (493)
T ss_pred eehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHH
Confidence 999998887 4456677887653321 11100 112234556666666665432222222221111 1111111 01
Q ss_pred EEecCCCCCCCChh----HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhh---hhhhhhhcccccC
Q 041017 288 WYTDSKAGPSFSQE----TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGML---DLLLVLRLNLKFG 360 (499)
Q Consensus 288 ~~~~~~~~~g~s~~----~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~---~~~l~~~~~~~~~ 360 (499)
+..+. .|++.. ..++.-..+.+|.+.|+.+.+++.+.++.........+.++..... .+.+.....
T Consensus 273 ~~~~~---~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~---- 345 (493)
T KOG1330|consen 273 YSYEL---IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFT---- 345 (493)
T ss_pred HHHHH---hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhh----
Confidence 11111 223222 2222234577888888888888777554433333333333332211 111111100
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh-HHHhHHHHHHHHHHH-hCCc
Q 041017 361 IPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA-GVLSSSWGGGLLLHI-LKVT 430 (499)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~ig~~l~g~l~~~-~g~~ 430 (499)
.....+.+....+.....-..+.+..-...+..|+++|.+++++...+..+ |..-+|.+.|++.+. .|+.
T Consensus 346 ~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 346 SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 111111111111222222222333344567889999999999999988876 666677788888875 4443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=184.56 Aligned_cols=341 Identities=13% Similarity=0.108 Sum_probs=203.2
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHH-HHhHHHHHHH-HHHHhcc----ch
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFI-LAGCLGVFSM-LLLSMHE----KL 141 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll-~~~~~~~~~~-~~~~~~~----~~ 141 (499)
...+.+++++.|+|++++|.+.++..+...+ +|+.|.++||+ | .||..+. +..+....+- +...+.| |.
T Consensus 28 pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl---g-~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~ 103 (412)
T PF01306_consen 28 PFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL---G-LKKHLLWFIAILLLLFGPFFIYVFGPLLQSNF 103 (412)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC---T-TCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-
T ss_pred HHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh---h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678877899999999999998777665 99999999998 3 3444332 2222211121 1111222 22
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 142 HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 142 ~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
.. ..++.....++......+..++++-+.++++.-+ .|-..++.++|.+++..++|.+.+ .+.+..||+.....
T Consensus 104 ~l-g~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~fe----YG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~ 177 (412)
T PF01306_consen 104 WL-GAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFE----YGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAA 177 (412)
T ss_dssp HH-HHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCC----cchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHH
Confidence 21 1112112223333334455677776666543223 445667889999999999999987 46678888766655
Q ss_pred HHHHHHHh-cccCCCCCCcchh-hhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCC
Q 041017 222 GLLILVGI-LLNEPQVPDFNYK-QVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFS 299 (499)
Q Consensus 222 ~~~~~~~~-~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 299 (499)
++..++.+ ..|+.+++.+..+ +..++.+...++..+.+|+|++|...++.......+..+....+.|.+...+..+.+
T Consensus 178 ~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g 257 (412)
T PF01306_consen 178 IILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQG 257 (412)
T ss_dssp HHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 54433333 3333332221111 111111224566788999999998887665433222111111111112211113445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHH
Q 041017 300 QETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQ 379 (499)
Q Consensus 300 ~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (499)
+..+|.+.+++.+...+.-.+.+++.+|+|.|+.++++..++.+= ..... ..++.+.+.....++++-..
T Consensus 258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iR----i~~~~------~~~~~~~i~~~klLH~~e~~ 327 (412)
T PF01306_consen 258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIR----IIGSG------FATNPWVISLIKLLHALEFP 327 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHH------T--SHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH----HHHHh------hhcchHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999998876665541 11110 12344444555666666666
Q ss_pred hhhhHHHHHHHhhCCCChhHHHHHHHH-HHHhhHHHhHHHHHHHHHHHhCC
Q 041017 380 LKWMPLLVLSSRLCPSGIEGTFFALLM-SIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 380 ~~~~p~~~~~~~~~p~~~~g~~~gl~~-~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
+...+..-++++..|++..+|.+.+.. ...++|..+.+.++|.+.|.+|.
T Consensus 328 l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~ 378 (412)
T PF01306_consen 328 LLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGF 378 (412)
T ss_dssp HHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCc
Confidence 667777788999999999999999864 55678999999999999999874
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-21 Score=183.63 Aligned_cols=330 Identities=16% Similarity=0.164 Sum_probs=225.3
Q ss_pred ccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhH
Q 041017 78 VQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAG 156 (499)
Q Consensus 78 ~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 156 (499)
+++-+.+++|++++...+...+ .|+.|.+.||+ ++|-.|++|..+...++++.++.++++. +++.|.++|+|
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-----Gy~ipm~~Gl~vmf~sTilFafg~sy~~--l~vAR~LQgvg 172 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-----GYKIPMVAGLFVMFLSTILFAFGNSYPM--LFVARSLQGVG 172 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-----ccccHHHHHHHHHHHHHHHHHHcchhHH--HHHHHHHhhhh
Confidence 4566778999999998887765 99999999997 5666788999999999999999998874 46788999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHHhcccCCCC
Q 041017 157 IAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQV 236 (499)
Q Consensus 157 ~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~ 236 (499)
.+..++...++++|..+++ .+|++++|......++|-++||++||.+++..|.+..|.++++..++-..+-+++=|+.+
T Consensus 173 sA~~~tsglamlAd~f~~d-~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 173 SAFADTSGLAMLADVFPED-NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHHHHhhhHHHHHHHcccc-hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 9999999999999998753 589999999999999999999999999999999999999999888776554444433322
Q ss_pred CCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHH
Q 041017 237 PDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSIL 316 (499)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~ 316 (499)
.+.+.. ++-..+|+++++|.++.........+.........++.|..+. +.-+..+.|+......+...+
T Consensus 252 ~~~~~~-------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~---m~~p~w~~G~~fLp~~~~y~i 321 (464)
T KOG3764|consen 252 MDPDST-------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET---MFTPGWEVGLAFLPASLSYAI 321 (464)
T ss_pred cCcccc-------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh---ccCCCcceeeeecccccchhc
Confidence 221000 1123467889999887666554443332111112223343332 332334667777777888899
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCC
Q 041017 317 AAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSG 396 (499)
Q Consensus 317 g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~ 396 (499)
|..+.+++.+|++..+.+.....+..+ +. .....+..+. ....+.-.....+.........+|...+.-+....+
T Consensus 322 g~~lfg~la~k~~~~~wl~~~~gl~~~-G~-~~~~iP~~~~---~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s 396 (464)
T KOG3764|consen 322 GTNLFGKLADKYPHLRWLLSLGGLATV-GV-SSGPIPFATS---IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVS 396 (464)
T ss_pred cCchHHHHHHhcCchhHHHHHHHHHHH-HH-HhchhHhhhh---HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcc
Confidence 999999999999855544332221111 11 1111111010 001111111112222333445566665555444444
Q ss_pred ---hhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCc
Q 041017 397 ---IEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVT 430 (499)
Q Consensus 397 ---~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~ 430 (499)
..|.++++......+|..+||.++|.+.+.+|..
T Consensus 397 ~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~ 433 (464)
T KOG3764|consen 397 GFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE 433 (464)
T ss_pred ccceeeeHHHHHHHHHHHhhhccccccchheeehhHH
Confidence 6789999999999999999999999999988743
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=181.31 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=120.4
Q ss_pred hhhHHHHhhhc--cCCChhHHHHHHHhhhchhhh-hhHHhhhccc-cccCCCCcchHHHHHhHHHHHHHHHHHhccchHH
Q 041017 68 RVGTQYYMKDV--QKVQPSEAQVYAGITSLPWIV-KPLWGLLTDV-LPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHL 143 (499)
Q Consensus 68 ~~~~~~~l~~~--~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~-~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~ 143 (499)
...++.|++++ +|+|+.+.+++.+.+.+...+ .++.|+++|| + +||+.++++.++.+++.+.++++++...
T Consensus 30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~-----G~~~~l~~~~~~~~~g~~~~~~~~~~~~ 104 (475)
T TIGR00924 30 QGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVW-----GTKKTMVLGGIVLMLGHFMLAMSIYPDL 104 (475)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc-----chHHHHHHHHHHHHHHHHHHHhcccHhH
Confidence 33455677766 999999999999998887766 7789999999 5 6778888999999999888888776543
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHH
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHP-SLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAG 222 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~-~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~ 222 (499)
+...+.+.++|.+...+...++++|..++++ ++|+...++.+.+.++|.++|+++++++.++.||++.|.+.++..+
T Consensus 105 --~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~ 182 (475)
T TIGR00924 105 --IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMV 182 (475)
T ss_pred --HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 2345566778877777777888898886532 4688889999999999999999999999998999999988765444
Q ss_pred HH
Q 041017 223 LL 224 (499)
Q Consensus 223 ~~ 224 (499)
+.
T Consensus 183 ~~ 184 (475)
T TIGR00924 183 IG 184 (475)
T ss_pred HH
Confidence 33
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-21 Score=188.15 Aligned_cols=413 Identities=10% Similarity=0.014 Sum_probs=239.9
Q ss_pred cchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccC-------CChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCC
Q 041017 45 HWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQK-------VQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYR 116 (499)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g-------~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~ 116 (499)
|.+.+...+.++ |.+++|....+...+.+-.-.+| .++...+.+..+..++.++ |.++|++.|++ +
T Consensus 39 ~fk~i~iAG~Gf-ftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-----G 112 (538)
T KOG0252|consen 39 HFKAIIIAGMGF-FTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-----G 112 (538)
T ss_pred HHHHHHHhhhhh-cccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----c
Confidence 444456666666 89999976566655532111222 4455667777888889888 88899999997 6
Q ss_pred cchHHHHHhHHHHHHHHHHHhccc---h--HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHH
Q 041017 117 RRPYFILAGCLGVFSMLLLSMHEK---L--HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSA 191 (499)
Q Consensus 117 Rk~~ll~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~ 191 (499)
||..+...+++..++++++++... . -+..+...|++.|+|.+.-.+...+..+|.+. .+.||...+.......
T Consensus 113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an--~~~RGa~iaavFa~Qg 190 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESAN--KKTRGAFIAAVFAMQG 190 (538)
T ss_pred chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhh--hccccceeEEEEEecc
Confidence 788888888888888877776521 1 12345677899999999888888888888874 3578877777666666
Q ss_pred HHHHHHHHHHhHhh----ccc-----------ChhHHHHHHHHHHHHHHHHHhcccCCCCCCc----chhhhhHHH----
Q 041017 192 IGALIGYSISGIFV----HLI-----------GPKGVFGLMTIPAGLLILVGILLNEPQVPDF----NYKQVNLKF---- 248 (499)
Q Consensus 192 ~G~~lg~~l~g~l~----~~~-----------gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~---- 248 (499)
+|.+.|.+++-.+. ..+ =||..|.+.+++++.+....+.+||+++... +.++..++.
T Consensus 191 ~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~ 270 (538)
T KOG0252|consen 191 FGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVL 270 (538)
T ss_pred hhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccc
Confidence 66666655543332 111 2999999988888877777788999865431 000000000
Q ss_pred -----------------HHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChh--------HH
Q 041017 249 -----------------LDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE--------TV 303 (499)
Q Consensus 249 -----------------~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--------~~ 303 (499)
++..+...+.+..+.. +-++..+...+.........-.++....+..|+.+. ..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~v 349 (538)
T KOG0252|consen 271 SVDIEAESTAESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKV 349 (538)
T ss_pred ccccchhhccccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHH
Confidence 0011111111211111 111112222211100000000011110111222221 11
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhh
Q 041017 304 GFVL-SVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKW 382 (499)
Q Consensus 304 g~~~-~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (499)
...+ .+...+.+.|.++...+.|+.|++...+.+++++.+..++ +...+|.. ....-+.+.. .+..+.+.+.-
T Consensus 350 A~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~---~~~~y~~~--~~~~Gf~v~y-~l~~ff~NFGP 423 (538)
T KOG0252|consen 350 AEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFV---IAGPYNQL--ENTIGFVVLY-SLTFFFGNFGP 423 (538)
T ss_pred HHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHH---HcCCcccc--cccCceeehH-HHHHHHHhcCC
Confidence 2222 2344556667777777889999999888888887775432 22233311 1111111111 12223332221
Q ss_pred hH-HHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHhhcCCC
Q 041017 383 MP-LLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRG 461 (499)
Q Consensus 383 ~p-~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~~lp~~ 461 (499)
.. ...+.+|..|.+.||+..|+...+++.|+++|....+.+.+.- + ...-.....+.+.+.+.+++.+..+++||+
T Consensus 424 n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-y--p~~~g~~~v~~i~~~~~~~gi~~T~l~pEt 500 (538)
T KOG0252|consen 424 NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-Y--PPNIGVRNVFIILAGCMLLGILFTLLIPET 500 (538)
T ss_pred CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-C--CccccchHHHHHHHHHHHHhHheeEEeecc
Confidence 11 1246789999999999999999999999999999888888732 1 111223455666677778888888899999
Q ss_pred CCCCC-CCchhhhhh
Q 041017 462 DPDTS-FLPAELESK 475 (499)
Q Consensus 462 ~~~~~-~l~~~~~~~ 475 (499)
+..++ ++++|.+..
T Consensus 501 k~~~leei~~e~~~~ 515 (538)
T KOG0252|consen 501 KGKSLEEISNEEESN 515 (538)
T ss_pred cccCHHHhcChhhcc
Confidence 88776 444444333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=170.63 Aligned_cols=366 Identities=14% Similarity=0.107 Sum_probs=227.8
Q ss_pred hhhhHHHHhhhccCC---ChhHH----HHHHHhhhchh-hhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc
Q 041017 67 ARVGTQYYMKDVQKV---QPSEA----QVYAGITSLPW-IVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH 138 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~---s~~~~----g~~~~~~~l~~-~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~ 138 (499)
.+...|+|+++..+. ++.+. |...++..+-. ++.|+.|.++|+. ..||+++-....+..++++.+.++
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~----g~Rk~~~~~f~~i~i~~~~~L~~i 109 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP----GPRKKFFGFFTAIGIISTFLLWFI 109 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC----CCcchHHHHHHHHHHHHHHHHHHh
Confidence 344555566654433 55443 33334444443 3599999999985 378888888888888888888888
Q ss_pred cc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHH--hHhh----------
Q 041017 139 EK-LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSIS--GIFV---------- 205 (499)
Q Consensus 139 ~~-~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~--g~l~---------- 205 (499)
++ -.++..+....+...+...+++.+|+++.+.+++++ -++..+..+....+|+.+.-.+. +.+.
T Consensus 110 ~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~--~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l 187 (438)
T COG2270 110 PPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN--MGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIIL 187 (438)
T ss_pred CCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc--cCcccccccccccccchHHHHHHHHHHhcccccceeEEe
Confidence 76 233334556677888888999999999999986543 34444554555556665544432 1111
Q ss_pred ------cccChhHHHHHHHHHHHHH-HHHHhcccCCCCCC-cchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhc
Q 041017 206 ------HLIGPKGVFGLMTIPAGLL-ILVGILLNEPQVPD-FNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAV 277 (499)
Q Consensus 206 ------~~~gw~~~f~~~a~~~~~~-~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 277 (499)
+...-|..+.+.++..++. +.+++.+|+.++.. .+.+.....+++-...+.+..+++.+.++++.-++++-
T Consensus 188 ~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~D- 266 (438)
T COG2270 188 LGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYID- 266 (438)
T ss_pred eccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh-
Confidence 1233566777777776665 55777777766432 11111112223322333344445665555544443321
Q ss_pred cccccccc---eeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhh
Q 041017 278 SLNIHEGL---FYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLR 354 (499)
Q Consensus 278 ~~~~~~~~---~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~ 354 (499)
+.++.. -.|.. +.+|++..+...+.....+.+++|+++++++.+|++.|+++..+.+...+..+.. +...
T Consensus 267 --Gv~til~~~~~fg~---~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~--~~~~ 339 (438)
T COG2270 267 --GVNTILAMGGVFGA---ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL--IFLE 339 (438)
T ss_pred --hHHHHHHHHHHHHH---HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH--HHcc
Confidence 111111 01222 2389999999998888899999999999999999999998888777666543321 1110
Q ss_pred cccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCC
Q 041017 355 LNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQF 434 (499)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~ 434 (499)
.+..++.+ ..+.++..+-......++.+++.|++++++.+|+++..++.++.+||.+.+.+.+..|-.+
T Consensus 340 ------~~~~f~i~--gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r--- 408 (438)
T COG2270 340 ------GELDFWIL--GLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSR--- 408 (438)
T ss_pred ------ccHHHHHH--HHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchh---
Confidence 11112221 2233333333444457899999999999999999999999999999999999999876322
Q ss_pred ChhHHHHHHHHhHhHHHHHHHhhcCCC
Q 041017 435 HNLWLAILIRNILRITPLCVIFLVPRG 461 (499)
Q Consensus 435 ~~~~~~~~i~~~~~li~l~~~~~lp~~ 461 (499)
..+....++..++++.+.+.|..
T Consensus 409 ----~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 409 ----AGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred ----hHHHHHHHHHHhhHhhEEeecCC
Confidence 22222233445566666666654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=186.24 Aligned_cols=363 Identities=15% Similarity=0.129 Sum_probs=245.7
Q ss_pred hhhccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhh-hhhHHhhhccccccCCCCcch
Q 041017 41 ATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWI-VKPLWGLLTDVLPIFGYRRRP 119 (499)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~-~~pl~G~lsD~~~~~g~~Rk~ 119 (499)
...++|.++.+.++...+.+|+..++- ... ..++++++-+.++++|+.++....+. .+|+.+.+.||+ +.|+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~G-v~~-~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-----g~R~ 112 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFG-LLF-EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-----GCRT 112 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheeh-hhH-HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-----CchH
Confidence 466799999999888888888876433 333 35567899999999999888765554 499999999997 6778
Q ss_pred HHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHH
Q 041017 120 YFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYS 199 (499)
Q Consensus 120 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~ 199 (499)
+++.|.++..+++++.+++++.+.. ++..-++.|+|.++...+...++..+. +++|+.++|+...+.++|..+-|.
T Consensus 113 v~i~G~~v~~~g~~lssF~~~i~~l-~lt~gvi~G~G~~~~~~paiviv~~YF---~kkR~lA~Gia~~GsG~G~~~~~~ 188 (509)
T KOG2504|consen 113 VMIAGGLVAALGLLLSSFATSLWQL-YLTFGVIGGLGLGLIYLPAVVILGTYF---EKKRALATGIAVSGTGVGTVVFPP 188 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHhhccchhhhcchhhhhhhHh---HHHHHHHHhhhhccCCcceeeHHH
Confidence 9999999999999999999998753 344557788888888776666666554 468999999999999999999999
Q ss_pred HHhHhhcccChhHHHHHHHHHHHHHHHHH-hcccCCCCC------------------------C---c--chhh----hh
Q 041017 200 ISGIFVHLIGPKGVFGLMTIPAGLLILVG-ILLNEPQVP------------------------D---F--NYKQ----VN 245 (499)
Q Consensus 200 l~g~l~~~~gw~~~f~~~a~~~~~~~~~~-~~~~e~~~~------------------------~---~--~~~~----~~ 245 (499)
+..++.+.+|||+.+++.+.+.+-.+... ..-|..+.. . + ...+ ..
T Consensus 189 l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (509)
T KOG2504|consen 189 LLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNL 268 (509)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccch
Confidence 99999999999999988777665443333 233311110 0 0 0000 00
Q ss_pred HH-------HH--HHHHHH----HHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHH
Q 041017 246 LK-------FL--DAGKAM----WTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPV 312 (499)
Q Consensus 246 ~~-------~~--~~~~~~----~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i 312 (499)
.. .+ ...+.. .+++++|.++.......+....+. ...+++....+..|+++.+.+.+....++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~----~p~~~l~~~~~~~g~~~~~aa~l~Siigi 344 (509)
T KOG2504|consen 269 ATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFN----VPFVYLPSYAKSLGLSSNDAAFLLSIIGV 344 (509)
T ss_pred hhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCCChhhhHHHHHHHHH
Confidence 00 00 011111 467888877666555444332211 11112222222378899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhH--HHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 041017 313 GSILAAILYQNSLKDYPFQDV--LFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSS 390 (499)
Q Consensus 313 ~~i~g~~l~~~~~~~~~~r~~--l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 390 (499)
..++|.++.|.+.|+...++. ..++.+..++.. +.. +. ..+........++.+++.+....-....+.
T Consensus 345 ~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~---~~~-p~------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~ 414 (509)
T KOG2504|consen 345 SDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR---LFL-PF------ATTYVGLIVFSILFGFCVGSFSSLTPVILV 414 (509)
T ss_pred hhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH---HHH-HH------hccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874443 333433333322 111 11 111122222334444444433322235678
Q ss_pred hhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 391 RLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 391 ~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
++++.+.-..++|+...+..++..+||.+.|.+.|..|
T Consensus 415 ~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg 452 (509)
T KOG2504|consen 415 DLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG 452 (509)
T ss_pred HHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence 99999999999999999999999999999998887754
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-18 Score=177.25 Aligned_cols=152 Identities=9% Similarity=0.043 Sum_probs=114.2
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhch-hhhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHH
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLP-WIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVF 145 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~-~~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 145 (499)
.....+.|+++++|+|+++.++..+.+... +...++.|+++||+ .+||+.++.+.++..++...++++++... .
T Consensus 40 ~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~----~G~r~~~~~g~~~~~ig~~l~~~~~~~~~-~ 114 (500)
T PRK09584 40 LQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV----LGTKRVIMLGAIVLAIGYALVAWSGHDAG-I 114 (500)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHhcccHH-H
Confidence 344556788889999999988887766543 33467899999993 26777888888888888888877643222 2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGL 223 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~ 223 (499)
+...+.+.++|.+...+...+++.|..++++++|....++.+.+.++|..+||.++|++.+.+|||+.|.+.++...+
T Consensus 115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 234556677887776667778889988654445566788889999999999999999999999999999987654433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=174.01 Aligned_cols=323 Identities=19% Similarity=0.159 Sum_probs=195.8
Q ss_pred ccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhH
Q 041017 78 VQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAG 156 (499)
Q Consensus 78 ~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 156 (499)
..+.+..-.|.+.+.+.+...+ +|+||.+|||+ +|||.+++|.+..+++....+.+.|+. .++..|++.|..
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-----GRkpvll~c~~~va~s~ll~~~S~~F~--afv~aR~l~Gi~ 134 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-----GRKPVLLACLIGVALSYLLWALSRNFA--AFVLARFLGGIF 134 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-----CchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhc
Confidence 3344556678888888888877 99999999996 899999999999999998889888883 345568888887
Q ss_pred HHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc---ccChhHHHHH----HHHHHHH-HHHHH
Q 041017 157 IAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH---LIGPKGVFGL----MTIPAGL-LILVG 228 (499)
Q Consensus 157 ~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~---~~gw~~~f~~----~a~~~~~-~~~~~ 228 (499)
-+...+ ..+++.|+.+ +|.|+..++.+..+.++|.++||.+||++.. ..| +..|.. ..+.... +..+.
T Consensus 135 kgnl~v-~rAiisdV~s--ek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~ 210 (451)
T KOG2615|consen 135 KGNLSV-IRAIISDVVS--EKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFP 210 (451)
T ss_pred cCchHH-HHHHHHhhcC--hhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence 766554 5789999985 3789999999999999999999999999987 222 111221 1111111 23456
Q ss_pred hcccCCCCCCcchh------hhh---HHH-HHHHHHHHHHccCcchhhHH------HH-HhhhhhccccccccceeEEec
Q 041017 229 ILLNEPQVPDFNYK------QVN---LKF-LDAGKAMWTTLKFPLVWRPC------LY-MYLSFAVSLNIHEGLFYWYTD 291 (499)
Q Consensus 229 ~~~~e~~~~~~~~~------~~~---~~~-~~~~~~~~~~l~~~~~~~~~------l~-~~~~~~~~~~~~~~~~~~~~~ 291 (499)
+++||+-+.+++.+ +.. .+. +.....-...+||++..-.+ .. .++++..+..+ . ++...
T Consensus 211 ~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~-~---~t~~~ 286 (451)
T KOG2615|consen 211 WFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGL-E---NTVLF 286 (451)
T ss_pred HhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHH-H---hhHHH
Confidence 77898744322110 000 000 00111122456665432211 11 11121111110 0 11111
Q ss_pred -CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHH
Q 041017 292 -SKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYP--FQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALV 368 (499)
Q Consensus 292 -~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~--~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 368 (499)
.++++|+++.+.|.+....++...+-.....+..+|.. .+..+..+..++.- .+.+.. + .+....+.
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP----~~llls-~-----~~~~~~l~ 356 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVP----AFLLLS-L-----ARTPVVLY 356 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHH----HHHHHh-c-----cccchhhh
Confidence 13568999999888766544444443333333344332 22222222222111 111111 1 11112223
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 369 IDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 369 ~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
....+..+.+.......+.++.+..|.++||+..|+..+.+.++.++||.++|.+..
T Consensus 357 ~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 357 LGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 344555666665555567888899999999999999999999999999999987765
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=194.50 Aligned_cols=386 Identities=13% Similarity=0.053 Sum_probs=246.8
Q ss_pred ccccccHHHHHHHHhhhccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhh
Q 041017 27 CGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGL 105 (499)
Q Consensus 27 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~ 105 (499)
++. +-..+|++...+ +++.+........+.+++..+.....++ .++++++++.++.|++.+.+.+++++ .++.|+
T Consensus 15 ~G~-~~~p~~lq~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~l~-~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~ 90 (633)
T TIGR00805 15 TGL-KPRPRCLQSLFS--KIKVFSLLLTCAQLQGLLYNGLVNSSLT-TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSY 90 (633)
T ss_pred cCC-CCCChHHhhcCC--cHHHHHHHHHHHHHHHHHHHHHHHhhch-hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHH
Confidence 455 445577664112 2333333333333566665566666665 45778999999999999999999876 889999
Q ss_pred hccccccCCCCcchHHHHHhHHHHHHHHHHHhcc----------------------------------------------
Q 041017 106 LTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE---------------------------------------------- 139 (499)
Q Consensus 106 lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~---------------------------------------------- 139 (499)
+.||. +||+++.++.++.+++.+++++.+
T Consensus 91 ~~~r~-----~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 165 (633)
T TIGR00805 91 FGTKL-----HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQ 165 (633)
T ss_pred hhccc-----CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccc
Confidence 99995 677788899999999988877653
Q ss_pred ---chHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc--------
Q 041017 140 ---KLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI-------- 208 (499)
Q Consensus 140 ---~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~-------- 208 (499)
+.....+++.++++|+|.+...+...+++.|..+ +++|+...++.+.+..+|.++|+++++++.+.+
T Consensus 166 ~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~--~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~ 243 (633)
T TIGR00805 166 HKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK--SKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNT 243 (633)
T ss_pred cCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCC
Confidence 1122245578899999998888888899998874 468999999999999999999999999887532
Q ss_pred --------------ChhHHHHHHHHHHHHHHHHHhcccCCCCCC-c--c-h--h-hh-----h-------HHHHHHHHHH
Q 041017 209 --------------GPKGVFGLMTIPAGLLILVGILLNEPQVPD-F--N-Y--K-QV-----N-------LKFLDAGKAM 255 (499)
Q Consensus 209 --------------gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~-~--~-~--~-~~-----~-------~~~~~~~~~~ 255 (499)
+|+..|++.+++.++..+.++++|++.+.. . + + + +. . ...++..+..
T Consensus 244 ~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (633)
T TIGR00805 244 EDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKII 323 (633)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHH
Confidence 266678777776666544444555432211 0 0 0 0 00 0 0112223456
Q ss_pred HHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHHhCCCC--chh
Q 041017 256 WTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPV-GSILAAILYQNSLKDYP--FQD 332 (499)
Q Consensus 256 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i-~~i~g~~l~~~~~~~~~--~r~ 332 (499)
+++++||.++...+..++.......+...++.|.. +.+|+++.+.+++.....+ +.++|.++.|++.||++ .|+
T Consensus 324 ~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~---~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~ 400 (633)
T TIGR00805 324 KRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLE---NQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKK 400 (633)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHH
Confidence 67899998877665554433221111111112222 2378999998888765444 67889999999999877 455
Q ss_pred HHHHHHHHHHHHhhhhh--hhh-----------------------h-h-----------ccc--------c---------
Q 041017 333 VLFWAQLLSGLSGMLDL--LLV-----------------------L-R-----------LNL--------K--------- 358 (499)
Q Consensus 333 ~l~~~~~~~~~~~l~~~--~l~-----------------------~-~-----------~~~--------~--------- 358 (499)
.+.++.+...++.+... ++. . . ++. +
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~ 480 (633)
T TIGR00805 401 AAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCS 480 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCC
Confidence 65555544444322111 000 0 0 000 0
Q ss_pred ----------c----------------CC---Cc-hhh--HHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHH
Q 041017 359 ----------F----------------GI---PD-FVA--LVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLM 406 (499)
Q Consensus 359 ----------~----------------~~---~~-~~~--~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~ 406 (499)
+ |. .. ..+ .+....+..+......+|....+.+..|+++|+-+.|+..
T Consensus 481 ~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~ 560 (633)
T TIGR00805 481 MSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQW 560 (633)
T ss_pred CccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHH
Confidence 0 00 00 001 1112223334445556676666778899999999999999
Q ss_pred HHHhh-HHHhHHHHHHHHHHH
Q 041017 407 SIDNA-GVLSSSWGGGLLLHI 426 (499)
Q Consensus 407 ~~~~l-g~~ig~~l~g~l~~~ 426 (499)
.+.++ |.+-+|++.|.++|.
T Consensus 561 ~~~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 561 LCMRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHHHhcCCChhHHHhhhhhc
Confidence 98886 778899999999985
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=176.44 Aligned_cols=363 Identities=16% Similarity=0.147 Sum_probs=217.0
Q ss_pred hHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHH
Q 041017 84 SEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADV 162 (499)
Q Consensus 84 ~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 162 (499)
.+.+++.++..++..+ +++.|.++|++ +||+.++++.+++.++.+++++++|... +.++|++.|+|.+....
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~-----GRk~~l~~~~~~~~iG~ii~~~a~~~~~--l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRI-----GRKKTLLLAVVLFLIGAIIIALAPSWYQ--LIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHhccchhhhhh
Confidence 3558999999998876 88999999997 7889999999999999999999998764 56789999999999998
Q ss_pred HHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc--cChhHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 041017 163 TIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL--IGPKGVFGLMTIPAGLLILVGILLNEPQVPDFN 240 (499)
Q Consensus 163 ~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~--~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~~ 240 (499)
....++.|+++ ++.||...+..+....+|..++..++ ...++ .+||..+.+..+++++..+..+++||+|++..+
T Consensus 162 ~~piy~sEiap--~~~RG~l~~~~~l~~~~Gi~~~~~~~-~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~ 238 (513)
T KOG0254|consen 162 LAPVYISEIAP--AHIRGTLVSLYQLFITIGILLGYCIN-YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE 238 (513)
T ss_pred cchhhHhhcCC--hhhhHHHHHHHHHHHHHHHHHHHHHh-hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 88899999984 36899999999999999999995444 44433 589999998888888775567889999876421
Q ss_pred h---hhh---------------hHH---HH-HHHHHH--------HHHccCcchhhHHHHH----hhhhhccccccccce
Q 041017 241 Y---KQV---------------NLK---FL-DAGKAM--------WTTLKFPLVWRPCLYM----YLSFAVSLNIHEGLF 286 (499)
Q Consensus 241 ~---~~~---------------~~~---~~-~~~~~~--------~~~l~~~~~~~~~l~~----~~~~~~~~~~~~~~~ 286 (499)
. ++. +.+ .+ +...+. ++-+.+|..++..+.. .+.+.. +++. ..
T Consensus 239 ~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~t--G~~~-~~ 315 (513)
T KOG0254|consen 239 KGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLT--GINY-VF 315 (513)
T ss_pred cCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHh--CCce-EE
Confidence 0 000 000 00 000000 1111123333333222 222221 2222 22
Q ss_pred eEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhccccc--CCCch
Q 041017 287 YWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKF--GIPDF 364 (499)
Q Consensus 287 ~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~ 364 (499)
||.....+..|++... .....+..+..+++..+...+.||.|||++++.+...+.++.+............. .....
T Consensus 316 ~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
T KOG0254|consen 316 YYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAG 394 (513)
T ss_pred eehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchh
Confidence 3333322223443221 12222334444455555567778889999999988887776543222111111000 01111
Q ss_pred hhHHHHHHHHHHHHHhhhhHH-HHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHH
Q 041017 365 VALVIDEGISRMVGQLKWMPL-LVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILI 443 (499)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~p~-~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i 443 (499)
++.+...++........+.|. +.+..|.+|.+.|++..++...+..+...+-....-.+.+..+ .. ..+...
T Consensus 395 ~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-----~~--~~f~~f 467 (513)
T KOG0254|consen 395 WLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-----IG--GTFGYF 467 (513)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cc--chHHHH
Confidence 222233333333334444444 3577899999999999999888877764443333333333322 00 111222
Q ss_pred HHhHhHHHH-HHHhhcCCCCCCCCC
Q 041017 444 RNILRITPL-CVIFLVPRGDPDTSF 467 (499)
Q Consensus 444 ~~~~~li~l-~~~~~lp~~~~~~~~ 467 (499)
.++..+... ....++||+|+.+.+
T Consensus 468 ~~~~~~~~~~fv~~~~pETkg~sle 492 (513)
T KOG0254|consen 468 GGICLLSLIIFVFFFVPETKGLTLE 492 (513)
T ss_pred HHHHHHHHHHHheEEcccCCCCcHH
Confidence 222223333 234599999998774
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=180.59 Aligned_cols=288 Identities=16% Similarity=0.110 Sum_probs=193.3
Q ss_pred hhhccchhhhhHHhHHhhhccch-hhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcc
Q 041017 41 ATEMHWSFVLGVVIVYGISQGLG-GALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRR 118 (499)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk 118 (499)
..+....++..++..| +....+ .++....+. =+++|.+....+.+...+++.+++++ +++.|.+.||+| -.
T Consensus 39 ~~K~dl~i~~~~~~~y-~~~~~d~~si~~a~l~-g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~-----ls 111 (495)
T KOG2533|consen 39 LRKLDLFILPFLCYLY-FHAYLDKSSIVNASLS-GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP-----LS 111 (495)
T ss_pred HHHHHHHHHHHHHHHH-HHHhcchhcchhHHHc-CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC-----hH
Confidence 3344555556666666 333333 222222222 24578899999999999999999997 889999999985 22
Q ss_pred hHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHH
Q 041017 119 PYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGY 198 (499)
Q Consensus 119 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~ 198 (499)
+.+....+...+..++....+|++. +++.|++.|+..+...+....+++...+ +++|+..+++++.+.++|.++|+
T Consensus 112 ~~l~~~~~~w~~~~~~~~~~~s~~~--~ialr~llGl~es~~wP~~~~~lg~wy~--~~e~g~r~~~~~a~~~~g~i~gg 187 (495)
T KOG2533|consen 112 KGLSVSGILWGLFGFLTAAVHSFPG--LIALRFLLGLFESGGWPGVVAILGNWYG--KSERGLRMGIWYASASLGNIFGG 187 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhcccchHHHHHHHhhcC--hhhhhhhHHHHHHhcchhhHHHH
Confidence 3454555554444444445667764 5677888888888888877777777764 46899999999999999999999
Q ss_pred HHHhHhh------cccChhHHHHHHHHHHHHH-HHHHhcccCCCCCCc---chhhh--hHHHH----------HHHHHHH
Q 041017 199 SISGIFV------HLIGPKGVFGLMTIPAGLL-ILVGILLNEPQVPDF---NYKQV--NLKFL----------DAGKAMW 256 (499)
Q Consensus 199 ~l~g~l~------~~~gw~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~---~~~~~--~~~~~----------~~~~~~~ 256 (499)
+++..+. ...||||.|.+.+++.++. ++.++++|+.|.... +.++. .++.+ .....++
T Consensus 188 liA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (495)
T KOG2533|consen 188 LIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFK 267 (495)
T ss_pred HHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHH
Confidence 9987753 3468999999999888777 445667888776321 11100 00111 1335677
Q ss_pred HHccCcchhhHHHHHhhhhhccccccccceeEEecC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCC----CCch
Q 041017 257 TTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDS-KAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKD----YPFQ 331 (499)
Q Consensus 257 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~----~~~r 331 (499)
+++++|++|...+..++..... ....+|++.. .++.|+|..+.+.+.....++.+++.++.+.+.|| ..+|
T Consensus 268 ~a~~dp~vw~~~l~~~~~~lv~----~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~ 343 (495)
T KOG2533|consen 268 EALKDPGVWPFSLCYFFLKLVN----YGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR 343 (495)
T ss_pred HHHhchhHHHHHHHHHHHhhcc----ccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH
Confidence 8999999998887777655432 1222333322 12367888888888888888888898899988888 4444
Q ss_pred hHHHHHHHHHHH
Q 041017 332 DVLFWAQLLSGL 343 (499)
Q Consensus 332 ~~l~~~~~~~~~ 343 (499)
........+...
T Consensus 344 ~~~~~~~~~~~~ 355 (495)
T KOG2533|consen 344 LLFIVFLCLYAI 355 (495)
T ss_pred HHHHHHHHHHHH
Confidence 444444333333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=181.24 Aligned_cols=355 Identities=12% Similarity=0.097 Sum_probs=227.0
Q ss_pred hhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 041017 76 KDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASS 154 (499)
Q Consensus 76 ~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 154 (499)
+++++.|+++-+++.+.++.|+.+ +...|++.||+ +-|+.+..+.++.+++++++.++.+.....+++.|+++|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-----G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-----GARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence 347899999999999999999998 55689999998 344567788888888888888876554334577899999
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc-cChhHHHHHHHHHHHHHHHHHh-ccc
Q 041017 155 AGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL-IGPKGVFGLMTIPAGLLILVGI-LLN 232 (499)
Q Consensus 155 ~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~-~gw~~~f~~~a~~~~~~~~~~~-~~~ 232 (499)
++.+...+....+..... .|+||++..++...+..+|.+++.+++|.+.+. +||+.+|++.++.+++..++++ +..
T Consensus 140 l~~g~~~pa~~~i~~~W~--P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWA--PPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHhHHHhhhhceeeeEC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999988887777766665 347999999999999999999999999999998 9999999999999888755543 445
Q ss_pred CCCCCCcc-hhhhhHHHHH-----H-----HHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChh
Q 041017 233 EPQVPDFN-YKQVNLKFLD-----A-----GKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301 (499)
Q Consensus 233 e~~~~~~~-~~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 301 (499)
|+|...+. .+++.+...+ . .-.++++++++.+|...+..+..+.....+....+.|.. +.+|++..
T Consensus 218 d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~---~VL~f~v~ 294 (466)
T KOG2532|consen 218 DSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK---EVLGFDVR 294 (466)
T ss_pred CCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHhCCChh
Confidence 55444321 1111111110 0 114678899999988877666544322111111122222 33899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC--------chhHHHH-HHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHH
Q 041017 302 TVGFVLSVGPVGSILAAILYQNSLKDYP--------FQDVLFW-AQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEG 372 (499)
Q Consensus 302 ~~g~~~~~~~i~~i~g~~l~~~~~~~~~--------~r~~l~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 372 (499)
..|++.++..+...+..++.|++.||.. .||++-. +....++. +..+.+.. -...+..+....
T Consensus 295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~-l~~l~~~~-------~~~~~~a~~~l~ 366 (466)
T KOG2532|consen 295 ETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVF-LLVLAFTS-------DEHRLLAVILLT 366 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHH-HHeeeecC-------CCcchHHHHHHH
Confidence 9999987766666666666666655432 3344332 22222221 11111111 111112211111
Q ss_pred HHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHH
Q 041017 373 ISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPL 452 (499)
Q Consensus 373 l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l 452 (499)
+.....+........-..+.+ ++..+..+|+.+.+.+++..++|.+.|.+.. -+ +.++...++.+.+++.+++.
T Consensus 367 ~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~----t~~eW~~VF~i~a~i~~~~~ 440 (466)
T KOG2532|consen 367 IAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN----TREEWRIVFLIAAGILIVGN 440 (466)
T ss_pred HHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC----CHHHHHHHHHHHHHHHHHhc
Confidence 212222332222222222224 5688999999999999999999999998875 22 23344455666666655555
Q ss_pred HH
Q 041017 453 CV 454 (499)
Q Consensus 453 ~~ 454 (499)
++
T Consensus 441 i~ 442 (466)
T KOG2532|consen 441 II 442 (466)
T ss_pred hh
Confidence 43
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=169.77 Aligned_cols=360 Identities=14% Similarity=0.091 Sum_probs=223.3
Q ss_pred HHhhhccCCChhHHHHHHHhhhchhh-hhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH-HHHHHHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGITSLPWI-VKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH-LVFAVSAL 150 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~~l~~~-~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 150 (499)
+.+++++|+|+.|.+++.++..+.-+ +..+.|++.||+ | +|| +...+.++..+-++..+++.+.+ .+.++...
T Consensus 38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf---G-gR~-~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g 112 (417)
T COG2223 38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF---G-GRK-WTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG 112 (417)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc---C-chH-HHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence 46678999999999999888766544 588999999998 3 555 45566667677777777764432 12234455
Q ss_pred HHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC---hhHHHHHHHHHHHHH-HH
Q 041017 151 TASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG---PKGVFGLMTIPAGLL-IL 226 (499)
Q Consensus 151 ~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g---w~~~f~~~a~~~~~~-~~ 226 (499)
++.|++.+.-. ...+.+++.. +|++.|.++|+.. +.|+|..+...++..+....+ ||.+..+..++.++. +.
T Consensus 113 ll~G~~GasFa-v~m~~~s~~f--P~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~ 188 (417)
T COG2223 113 LLLGLAGASFA-VGMPNASFFF--PKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVL 188 (417)
T ss_pred HHHhcccceeh-cccccccccC--ChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 55666654332 2334444444 3468899999888 899999999999988888888 998877766555554 44
Q ss_pred HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHH
Q 041017 227 VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFV 306 (499)
Q Consensus 227 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 306 (499)
.++.+++.++.+...++. ++ .++...+++|+.|...++.+........++.....+ .++.+|.++...|.+
T Consensus 189 ~~~~~~d~p~~r~~~~~~----~~--~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~---~~~~fg~~~~~Ag~~ 259 (417)
T COG2223 189 AWLGMNDVPEHRASVKPQ----LP--AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMY---LVTQFGLSPVTAGLI 259 (417)
T ss_pred HHHHhCCChhhhcccccc----ch--hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCChhhHHHH
Confidence 556666655432111110 10 334456778998887655443321111111111112 223388998888877
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHH
Q 041017 307 LSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLL 386 (499)
Q Consensus 307 ~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~ 386 (499)
.........+...+.|++.||+|.+|.+......++++........+..+. .++....+........+.++......
T Consensus 260 a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~l~~~~G~GnGsvf 336 (417)
T COG2223 260 AFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH---GGSFVVFVAVFLALFVFAGLGNGSVF 336 (417)
T ss_pred HHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc---CcchHHHHHHHHHHHHHhccCcchhe
Confidence 766666666777889999999999999988877777754322211111100 11222222222222334444433344
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHhhcCCC
Q 041017 387 VLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPRG 461 (499)
Q Consensus 387 ~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~~lp~~ 461 (499)
.++..+.|+ +.|.+.|+...++++|+..-|..-|...+..| ++.. .+.+...+.+++++..+....+
T Consensus 337 k~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg----~~~~---~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 337 KMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG----SYTG---AFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred eechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc----cHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 455566654 67889999999999999888999888888765 2222 2333334455556555544443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-16 Score=167.79 Aligned_cols=355 Identities=15% Similarity=0.097 Sum_probs=225.9
Q ss_pred hccCCChhHHHHHHHhhhchhhhhh-HHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Q 041017 77 DVQKVQPSEAQVYAGITSLPWIVKP-LWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSA 155 (499)
Q Consensus 77 ~~~g~s~~~~g~~~~~~~l~~~~~p-l~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 155 (499)
+..+.+.....+..+++++|..+++ ++|+++||+ +||+.++++.++..++.++.++++|++. +.+.|++.|+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-----GRk~~~~~~~~~~~i~~~~~a~a~~~~~--~~~~Rfl~G~ 183 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-----GRKPVLLVSLLLFIIFGILTAFAPNYWM--FLIFRFLSGF 183 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-----ccHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHh
Confidence 4677788888899999999999966 589999996 7899999999999999999999999884 5678899999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHHhcccCCC
Q 041017 156 GIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQ 235 (499)
Q Consensus 156 g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~ 235 (499)
+.+.......+++.|+. .|+.|+.+.++ ......|+.++++.++++.. +||+.+++..++.++.++.+++.||++
T Consensus 184 ~~~~~~~~~~~~~~E~~--~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~ 258 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIV--SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESP 258 (521)
T ss_pred hccchhHHhHhhheeec--CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence 99999888899999998 45789999988 77777888888888888887 899999999998887766666777998
Q ss_pred CCCcc---hhhhhHH-----------------HHHH--HH-----------HHHHHccCcchhhHHHHHhhhhhcccccc
Q 041017 236 VPDFN---YKQVNLK-----------------FLDA--GK-----------AMWTTLKFPLVWRPCLYMYLSFAVSLNIH 282 (499)
Q Consensus 236 ~~~~~---~~~~~~~-----------------~~~~--~~-----------~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 282 (499)
++... .++..+. .+.. .+ .+...++.|++....++..+.....
T Consensus 259 rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~---- 334 (521)
T KOG0255|consen 259 RWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF---- 334 (521)
T ss_pred HHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH----
Confidence 76421 1100000 0000 00 0122333443333333322221110
Q ss_pred ccceeEEec-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 041017 283 EGLFYWYTD-SKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGI 361 (499)
Q Consensus 283 ~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~ 361 (499)
...|+... ...++|-+.. ..........+.+....+...++.|||.....+..+..++.+........
T Consensus 335 -~~~y~gl~~~~~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~------- 403 (521)
T KOG0255|consen 335 -SLVYYGLSLNVSGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD------- 403 (521)
T ss_pred -hHHHHhhhhhhhhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc-------
Confidence 01111111 1111333322 11222222455555556677788888888877776666654322221110
Q ss_pred CchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHH
Q 041017 362 PDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAI 441 (499)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~ 441 (499)
...........+..+..+..+.....+.+|+.|...|..+.+..+...++|.+++|.+.-...... ..+....
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~-------~~~~~~~ 476 (521)
T KOG0255|consen 404 LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF-------PLLGLIL 476 (521)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccchHHH
Confidence 110111122233344445555555678899999999999999999999999999988866554421 1121111
Q ss_pred HHHHhHhHHHHHHHhhcCCCCCCCC
Q 041017 442 LIRNILRITPLCVIFLVPRGDPDTS 466 (499)
Q Consensus 442 ~i~~~~~li~l~~~~~lp~~~~~~~ 466 (499)
...+..+.+++...++||+++...
T Consensus 477 -~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 477 -FGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred -HHHHHHHHHHHHHhcCcccCCCCC
Confidence 122223333344479999987766
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-17 Score=168.69 Aligned_cols=330 Identities=14% Similarity=0.087 Sum_probs=189.5
Q ss_pred HHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALT 151 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (499)
+++.+++|- .....|+.+...++.+. .|+.|.+||.+ +||..++.+.++.+++.+.++.++|... ++....
T Consensus 68 ~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlf-----GRr~~~i~g~~l~vvG~Iv~atA~~~~~--~iag~~ 139 (599)
T PF06609_consen 68 PYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLF-----GRRYFFIIGSLLGVVGSIVCATAQNMNT--FIAGMV 139 (599)
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHh-----cchHHHHHHHHHHHhHHHHhhcCCcHHH--HHHHHH
Confidence 355668884 46677887777777665 99999999997 7899999999999999999999999874 456677
Q ss_pred HHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHH--HHh
Q 041017 152 ASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL--VGI 229 (499)
Q Consensus 152 l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~--~~~ 229 (499)
+.++|.+.... ....++|+.+. +.|+...++...........++.++..+..+.+|||.|++..+...+.++ ..+
T Consensus 140 l~GvgaG~~~~-~~~~isEl~p~--k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 140 LYGVGAGVQEL-AALAISELVPN--KWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred HHHHhhHHHHH-HHHHHHHhccc--chhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 78888777765 34557898853 56665555544444444445666665565567999999988776555422 333
Q ss_pred cccCCCCCC-c--c-hhhhhHHH--------------------------------------------------HHHH---
Q 041017 230 LLNEPQVPD-F--N-YKQVNLKF--------------------------------------------------LDAG--- 252 (499)
Q Consensus 230 ~~~e~~~~~-~--~-~~~~~~~~--------------------------------------------------~~~~--- 252 (499)
+.|.+++.. . . .++.-.++ .+.+
T Consensus 217 Y~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~ 296 (599)
T PF06609_consen 217 YFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAP 296 (599)
T ss_pred hCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccC
Confidence 444332211 1 1 11100000 0000
Q ss_pred -HHH--HHHccCcch-hhHHHHHhhhhhccccccccceeEEecCCCCCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHh
Q 041017 253 -KAM--WTTLKFPLV-WRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQ---ETVGFVLSVGPVGSILAAILYQNSL 325 (499)
Q Consensus 253 -~~~--~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~---~~~g~~~~~~~i~~i~g~~l~~~~~ 325 (499)
+.+ ++++|+++. ...++..|+....+.. ...+|.+.....++-+. ...++......++...|+.+.+.+.
T Consensus 297 ~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s---~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~ 373 (599)
T PF06609_consen 297 KDPLFPHRLFKDRRGFAALLVISFISGMNFFS---VNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLF 373 (599)
T ss_pred CCCcCCHHHhccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHH
Confidence 000 244555432 2222333333221111 11111111000011111 2345666666777777877777777
Q ss_pred CCCCchhHH-HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHH
Q 041017 326 KDYPFQDVL-FWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFAL 404 (499)
Q Consensus 326 ~~~~~r~~l-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl 404 (499)
++.++-|.. .++.+.+.+ ++..+..... ++.-..++...+.++..+....|.....+-.+|++..|++.|+
T Consensus 374 ~~ir~~Kw~li~~~~~~ta-~~Gama~~~~-------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL 445 (599)
T PF06609_consen 374 SKIRHIKWQLIFGSVLMTA-FCGAMAAVRP-------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGL 445 (599)
T ss_pred HHccchhHHHHHHHHHHHH-HHHHHHHccC-------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHH
Confidence 655544433 344333332 1111111111 1111223344555666666666666666667899999999999
Q ss_pred HHHHHhhHHHhHHHHHHHHH
Q 041017 405 LMSIDNAGVLSSSWGGGLLL 424 (499)
Q Consensus 405 ~~~~~~lg~~ig~~l~g~l~ 424 (499)
..+++.+|+.+|..+..-+.
T Consensus 446 ~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 446 TGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 99999999988877665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=156.15 Aligned_cols=343 Identities=14% Similarity=0.076 Sum_probs=228.3
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+..|+...+....+ |.+++.++++..|++++...++.+|.+ ....|.+.+|+ ++|.-++++..++++++.+..
T Consensus 23 fl~G~~~~l~diLi-p~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-----gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 23 FLWGFITCLNDILI-PHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-----GYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHhhcchhhH-HHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHh
Confidence 44455444445555 467889999999999999999999987 66799999997 677788999999999988775
Q ss_pred hccch-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc--------
Q 041017 137 MHEKL-HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL-------- 207 (499)
Q Consensus 137 ~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~-------- 207 (499)
-+.+. .+..++...++.+.|.+.-++..+.++..+.++ ++...-+.+.+...++|.++||++++.++.+
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~--~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~ 174 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKP--ESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSA 174 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc--hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCH
Confidence 44332 222455667888999999999999999988753 3444557788889999999999999987762
Q ss_pred -----------cChhHHHHHHHHHHHHHHHHH--hcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhh
Q 041017 208 -----------IGPKGVFGLMTIPAGLLILVG--ILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLS 274 (499)
Q Consensus 208 -----------~gw~~~f~~~a~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 274 (499)
-.||++|...+....++.+.. ...||.+...++..+ .++. ...+.+++|+++...++.|++
T Consensus 175 ~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~----~~~~--~~~~l~~~~~~~~gvl~~FlY 248 (422)
T COG0738 175 AQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA----SGSA--GLSSLFQNKHLRLGVLAIFLY 248 (422)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc----cccc--hHHHHHhChHHHHHHHHHHHH
Confidence 136677777665554443332 234444332221100 0010 235667899988888888887
Q ss_pred hhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhh
Q 041017 275 FAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLR 354 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~ 354 (499)
-......+..+..+..+. .|+++.+.+...+...++.++|.++..++.+|+...|.+.+..+...+..+. ..+
T Consensus 249 VG~Eva~gsfl~~y~~~~---~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~-~~l--- 321 (422)
T COG0738 249 VGAEVAIGSFLVSYLEEL---LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA-VAL--- 321 (422)
T ss_pred HhHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH-HHH---
Confidence 543322222111222222 6788888888888889999999999999999999999887766554443221 111
Q ss_pred cccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCc
Q 041017 355 LNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVT 430 (499)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~ 430 (499)
.+. ...+....+.++..+..+....++..+..|++.+ .-|..-.+.-.|+++-|.+-|++.|..|..
T Consensus 322 ------~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts--~~s~~l~maivGGAiiP~l~G~i~d~~g~~ 388 (422)
T COG0738 322 ------IGG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS--VGSGLLVMAIVGGAIIPPLQGVIADMFGIQ 388 (422)
T ss_pred ------hcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc--ccceeeeeheecchHHHHHHHHHHHhhhhH
Confidence 111 1111122334455555555556777788884333 234444455678899999999999998753
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-16 Score=156.22 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=124.6
Q ss_pred hhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhH-HHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHH
Q 041017 50 LGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSE-AQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCL 127 (499)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~-~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~ 127 (499)
.++.+.|+|+.-+..+ .+.+.+ ++++++|+|++| .|.+.+.+..+|++ +.+.|+++||+ |-|+++.++.+.
T Consensus 29 ~~~lC~fGF~~e~R~n-~s~a~p-~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-----G~K~vL~l~~l~ 101 (511)
T TIGR00806 29 VLYLCFYGFMAQFRPG-ESFITP-YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-----RYKPVLVLQALS 101 (511)
T ss_pred HHHHHHHHHHHHhhch-HHHHHH-HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHH
Confidence 4445667777766643 344554 567799999999 99999999999987 88899999997 567788999999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc
Q 041017 128 GVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL 207 (499)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~ 207 (499)
..+.+++++++++... +.+.+++.|++.+... .+..++....+ +++|+++.++.+.+..+|.++++++++. +..
T Consensus 102 Wsl~t~L~~fa~Sl~~--L~i~R~llGvaEA~~~-A~~syI~~WfP--~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s 175 (511)
T TIGR00806 102 FVCVWLLLLLGTSVWH--MQLMEVFYSVTMAARI-AYSSYIFSLVP--PSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVT 175 (511)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 9999999998877653 4567788888888777 77778777764 4789999999999999999999999998 557
Q ss_pred cChhHHHHH
Q 041017 208 IGPKGVFGL 216 (499)
Q Consensus 208 ~gw~~~f~~ 216 (499)
+|||+-+.+
T Consensus 176 ~gWr~y~~L 184 (511)
T TIGR00806 176 LGWISYSTL 184 (511)
T ss_pred cCchhHHHH
Confidence 899975443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-15 Score=153.76 Aligned_cols=151 Identities=16% Similarity=0.082 Sum_probs=109.2
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHH
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVF 145 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 145 (499)
....++.|+++++|+++.+.+.+.+.+.....+ .++.|+++||+ .+||+.++++.++..++.+.++..++.....
T Consensus 28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRi----lGrrr~iliG~il~~lg~lll~~~~~~~~~~ 103 (493)
T PRK15462 28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV----LGNRMAVMLGALLMAIGHVVLGASEIHPSFL 103 (493)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 344556677888999999999998888766555 66899999996 2567778888888887776665433211111
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAG 222 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~ 222 (499)
.....+..+|.+...+...++++|..++++++|....++.+.+.++|..++|.+++++.+..|||+.|.+.++..+
T Consensus 104 -~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~ 179 (493)
T PRK15462 104 -YLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI 179 (493)
T ss_pred -HHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence 1122223344444444456788999875545788889999999999999999999999999999999988665433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-21 Score=201.16 Aligned_cols=362 Identities=16% Similarity=0.178 Sum_probs=214.2
Q ss_pred hHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc---chHHHHHHHHHHHHHhHHHH
Q 041017 84 SEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE---KLHLVFAVSALTASSAGIAI 159 (499)
Q Consensus 84 ~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g~~~ 159 (499)
.+.++..+...++..+ .++.|.++||+ +||+.++.+.++..++.++.++++ +.. .+...|++.|++.+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-----GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~R~~~G~~~g~ 118 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-----GRKPALIISALLMIIGSILIAFAPSYNNFW--MLLIGRFLIGFGIGG 118 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-----cccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence 3467788888888887 78899999997 677888889999999999999988 655 345678889999988
Q ss_pred HHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc---ccChhHHHHHHHHHHHHHHHHHhcccCCCC
Q 041017 160 ADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH---LIGPKGVFGLMTIPAGLLILVGILLNEPQV 236 (499)
Q Consensus 160 ~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~---~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~ 236 (499)
..+....++.|..+ ++.|++..++.+.+..+|.+++..++-.+.. ..+||..+.+.+++.++..+..+++||+|+
T Consensus 119 ~~~~~~~~~~E~~~--~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~ 196 (451)
T PF00083_consen 119 AYVVSPIYISEIAP--PKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPR 196 (451)
T ss_pred cccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888889999884 4789999999999889998888876644433 245999998888888766666678999987
Q ss_pred CCcch---hhh-------------hHHHHH---HH-------HHHHHHccCcch-hhHHHHHhhhhhccccccccceeEE
Q 041017 237 PDFNY---KQV-------------NLKFLD---AG-------KAMWTTLKFPLV-WRPCLYMYLSFAVSLNIHEGLFYWY 289 (499)
Q Consensus 237 ~~~~~---~~~-------------~~~~~~---~~-------~~~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 289 (499)
+...+ ++. +++.++ .. ....+.++++.. ++......+.............++.
T Consensus 197 wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 276 (451)
T PF00083_consen 197 WLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS 276 (451)
T ss_pred eecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence 64211 000 000000 00 012233444331 1111111111111111111222333
Q ss_pred ecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhh-hcccccCCCchhhHH
Q 041017 290 TDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVL-RLNLKFGIPDFVALV 368 (499)
Q Consensus 290 ~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~ 368 (499)
+...+..|.++.. .......+..+++..+...+.||+|||+++..+...++++.+....... ..+.. ....... +
T Consensus 277 ~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-i 352 (451)
T PF00083_consen 277 PSIFENAGISNSF--LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS-SWWSILS-I 352 (451)
T ss_pred ccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-c
Confidence 3322224444441 1112223344445555557789999998888877766664432210010 00000 0001111 1
Q ss_pred HHHHHHHHHHHhhhhHH-HHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhH
Q 041017 369 IDEGISRMVGQLKWMPL-LVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNIL 447 (499)
Q Consensus 369 ~~~~l~~~~~~~~~~p~-~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~ 447 (499)
....+.....+..+.|. ..+..|.+|.+.|++..|+...+++++..+++.+...+.+..+. . ..+.+.+++
T Consensus 353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~----~----~~~~i~~~~ 424 (451)
T PF00083_consen 353 VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGG----W----GVFLIFAGV 424 (451)
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----c----ccchhhHHH
Confidence 11111112222233333 36779999999999999999999999988888887776665541 0 112222233
Q ss_pred hHHHHHH-HhhcCCCCCCCC
Q 041017 448 RITPLCV-IFLVPRGDPDTS 466 (499)
Q Consensus 448 ~li~l~~-~~~lp~~~~~~~ 466 (499)
.++..++ ..++||||+++.
T Consensus 425 ~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 425 CLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred HHHHHhheeEEEeeCCCCCH
Confidence 3333333 458999998765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=144.84 Aligned_cols=359 Identities=11% Similarity=0.046 Sum_probs=205.4
Q ss_pred HHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALT 151 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (499)
+-+...+|.+..+..++......++.+ .-.||..+|++ +||+-..+......+.-.+.+.+||+... .+++-
T Consensus 102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-----grr~~f~~T~l~t~v~~~is~~spnf~~L--~~f~~ 174 (528)
T KOG0253|consen 102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-----GRRKGFNLTFLVTGVFGVISGASPNFASL--CVFRA 174 (528)
T ss_pred HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-----hcchhhhhhHHHHHHHHHhhcCCCCeehh--hHHHH
Confidence 456678898989999998888999988 67899999997 44445555566666666667778888753 34455
Q ss_pred HHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHHhcc
Q 041017 152 ASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILL 231 (499)
Q Consensus 152 l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~~~~ 231 (499)
+.++|.+. .+...++..|..+. ..|...+-.. ..+.+|.+....++-.++..+||||......++..+...+++++
T Consensus 175 l~~~g~gg-~pv~~~~yle~lp~--~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~ 250 (528)
T KOG0253|consen 175 LWGFGVGG-LPVDSAIYLEFLPS--SHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWV 250 (528)
T ss_pred HHhccCCC-ccHhHHHHHHhccC--cCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhc
Confidence 55666554 33345566777643 3566554444 78899999999888778888999998888787777777788899
Q ss_pred cCCCCCCc---chhhh----------------------------hHH---H--------HHHHHHHHHHccCcchhhHH-
Q 041017 232 NEPQVPDF---NYKQV----------------------------NLK---F--------LDAGKAMWTTLKFPLVWRPC- 268 (499)
Q Consensus 232 ~e~~~~~~---~~~~~----------------------------~~~---~--------~~~~~~~~~~l~~~~~~~~~- 268 (499)
||+++..- .+.+. +++ . ++.......++ .|+++...
T Consensus 251 ~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLl-sp~lrkttl 329 (528)
T KOG0253|consen 251 YESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLL-SPKLRKTTL 329 (528)
T ss_pred ccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhc-ChHHHHHHH
Confidence 99987431 10000 000 0 00000011111 12221111
Q ss_pred --HHHhhhhhc-c----------cccccccee---EEec-CC---CCCCCChhHHHHH-HHHHHHHHHHHHHHHHHHhCC
Q 041017 269 --LYMYLSFAV-S----------LNIHEGLFY---WYTD-SK---AGPSFSQETVGFV-LSVGPVGSILAAILYQNSLKD 327 (499)
Q Consensus 269 --l~~~~~~~~-~----------~~~~~~~~~---~~~~-~~---~~~g~s~~~~g~~-~~~~~i~~i~g~~l~~~~~~~ 327 (499)
..+++.+.. + .+.+..... +..+ .+ +-...+... +. ..+...+.+.|..+.+.+.+|
T Consensus 330 llw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~d--YrdllitslaefPGlLIt~~iver 407 (528)
T KOG0253|consen 330 LLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKD--YRDLLITSLAEFPGLLITGVIVER 407 (528)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhH--HHHHHHHHHhhCCchhHHHHHHHH
Confidence 111111110 0 000010000 0110 00 001111111 11 134566777788888888888
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHH
Q 041017 328 YPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMS 407 (499)
Q Consensus 328 ~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~ 407 (499)
.|||+.+..+.+++.+..+....... ++...+ ..+...++...++-..+.+..|.+|...|++..|..++
T Consensus 408 lGRKkTMal~l~~f~iflfll~~c~~--------rn~~tv--llf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSs 477 (528)
T KOG0253|consen 408 LGRKKTMALSLILFGIFLFLLTTCKT--------RNAYTV--LLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSS 477 (528)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHhcC--------cchhHH--HHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhh
Confidence 99999998888877775432221111 111111 11122222223333335678899999999999999999
Q ss_pred HHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHhhcC-CCCCCC
Q 041017 408 IDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVP-RGDPDT 465 (499)
Q Consensus 408 ~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~~lp-~~~~~~ 465 (499)
+.++|+++.|.++ ...+. .. ++ .+.+....++++.+...++| |+|+.+
T Consensus 478 maRIggI~~p~iA-~~~e~-s~------sl--~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 478 MARIGGIFSPVIA-MRAEL-ST------SL--PIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred HHhhhhhhhhHHH-HHhcc-ce------ee--hHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 9999999999988 33322 11 11 12333344455555555555 555544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-15 Score=141.68 Aligned_cols=361 Identities=16% Similarity=0.151 Sum_probs=214.0
Q ss_pred hhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhhhhHHhhhcc-----ccccCCCCcchHHHHH
Q 041017 50 LGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTD-----VLPIFGYRRRPYFILA 124 (499)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD-----~~~~~g~~Rk~~ll~~ 124 (499)
..+.++| ..||++.++.. .+|..++ .-|+|.++.+.+ +...-|+.++.+|.++.| |+ | |||.|++-+
T Consensus 34 llLl~LY-llQGiP~GL~~-~iP~lL~-ak~vSyt~~a~f-S~ay~P~sLKllWaPiVDs~y~k~~---G-rrksWvvp~ 105 (510)
T KOG3574|consen 34 LLLLFLY-LLQGIPLGLIG-AIPLLLQ-AKGVSYTSQAIF-SFAYWPFSLKLLWAPIVDSVYSKRF---G-RRKSWVVPC 105 (510)
T ss_pred HHHHHHH-HHcCCchhHhh-hhHHHhc-CCCcchhhhhhh-hhhhhHHHHHHHHHhhhHHHHHHhh---c-cccceeeeh
Confidence 5556778 89999988887 7776665 579999998866 677789999999999999 54 4 888898888
Q ss_pred hHHHHHHHHHHHhccchH---------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHH
Q 041017 125 GCLGVFSMLLLSMHEKLH---------LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGAL 195 (499)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~ 195 (499)
..+....++.++...+.+ .......+++..+..+.+|++.|++...+.+ |++-|.+.+ +..+|.-
T Consensus 106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs--~e~lgyaST----~q~Vg~~ 179 (510)
T KOG3574|consen 106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLS--RENLGYAST----CQSVGQT 179 (510)
T ss_pred HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcC--HhhcCchhH----HHHHHHh
Confidence 877777777766643211 1122234466788999999999999887763 456665554 4455555
Q ss_pred HHHHHHhHhh----c-------ccChh---------HHHHHHHHHHHHH-HHHHhcccCCCCCCcchhhhhHHHHHHHHH
Q 041017 196 IGYSISGIFV----H-------LIGPK---------GVFGLMTIPAGLL-ILVGILLNEPQVPDFNYKQVNLKFLDAGKA 254 (499)
Q Consensus 196 lg~~l~g~l~----~-------~~gw~---------~~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 254 (499)
.|..++..+. . ..+|+ .-+++.+...++. .+..+.-+|.+.+. .++.+.+.++..+.
T Consensus 180 ~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~--~~e~~~~i~~~yk~ 257 (510)
T KOG3574|consen 180 AGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESV--DEELELGIHESYKL 257 (510)
T ss_pred hhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhh--hhhhhcCHHHHHHH
Confidence 5555544321 1 11232 1123334444444 33334334433321 12223345566667
Q ss_pred HHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHH
Q 041017 255 MWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVL 334 (499)
Q Consensus 255 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l 334 (499)
++++++-|.+.....+....... +..+.++...... +.|++..+.+.+........++.+...|++..+...-...
T Consensus 258 l~~vLklk~v~~la~i~lt~K~g-f~a~da~t~LkLl---e~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~ 333 (510)
T KOG3574|consen 258 LRDVLKLKSVRWLAGILLTGKLG-FQAADALTSLKLL---EHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVF 333 (510)
T ss_pred HHHHHcCccHHHHHHHHHHHHHH-hhhhhhccchHHH---HcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHH
Confidence 78888888765555554444332 2222333222211 2688888777766555566667777777666532111111
Q ss_pred HHHHHHHHHHhhhh---hhhhhhccccc-CCCchhhHH--HHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 041017 335 FWAQLLSGLSGMLD---LLLVLRLNLKF-GIPDFVALV--IDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSI 408 (499)
Q Consensus 335 ~~~~~~~~~~~l~~---~~l~~~~~~~~-~~~~~~~~~--~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~ 408 (499)
.-+.-...+..... ....+.+.... .++...+++ ..-.+.+.....+++...+..+++.||...||+|.+.|..
T Consensus 334 lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTL 413 (510)
T KOG3574|consen 334 LKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTL 413 (510)
T ss_pred HHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHH
Confidence 10100111111111 11112221111 133332222 2233444555555666678899999999999999999999
Q ss_pred HhhHHHhHHHHHHHHHHHhCCc
Q 041017 409 DNAGVLSSSWGGGLLLHILKVT 430 (499)
Q Consensus 409 ~~lg~~ig~~l~g~l~~~~g~~ 430 (499)
.|+|+..-..+...+.|.+++.
T Consensus 414 snLGg~wp~tv~l~l~D~ltv~ 435 (510)
T KOG3574|consen 414 SNLGGNWPGTVALWLADGLTVK 435 (510)
T ss_pred HHhcCCcHHHHHHHhcccCcee
Confidence 9999998888889999887764
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-13 Score=144.22 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=109.3
Q ss_pred HHhhhccCCChhHHHHHHHhhhchhhhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc------cchHHHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH------EKLHLVFA 146 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~------~~~~~~~~ 146 (499)
+.+++++|+|.++++++.++.......+++.|+++||+ +||+.++++.++..++.+.++++ ++.+ .+
T Consensus 51 ~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~-----G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~--~l 123 (591)
T PTZ00207 51 GAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYL-----GPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV--RL 123 (591)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH--HH
Confidence 35678999999999998776322223477889999997 68888999999999999888886 3444 33
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHH-
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLI- 225 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~- 225 (499)
.+.+.+.|+|.+..++.....+.+.. |++||.+.|+...+.++|+++.+.+...+.. .+|+..|++.++.++++.
T Consensus 124 ~l~r~l~G~G~~~~~~~~~~~i~~~F---p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 124 SVYNGLMTLGCMLFDLGAVVTVLSVF---PSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 45667788888777776666666654 5689999999999999999764444433333 368888888887777663
Q ss_pred HHHhcccCC
Q 041017 226 LVGILLNEP 234 (499)
Q Consensus 226 ~~~~~~~e~ 234 (499)
+...+++++
T Consensus 200 l~~~~vr~p 208 (591)
T PTZ00207 200 LAIVFMRLP 208 (591)
T ss_pred HHHhheeCC
Confidence 333444433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-14 Score=140.08 Aligned_cols=371 Identities=18% Similarity=0.243 Sum_probs=226.3
Q ss_pred hhHHhHHhhhccchhhhhhhhHHHHhhh-ccCCChhHHHHHHHhhhchhhhhhHHhhhcccc--ccCCCCcchHHHHHhH
Q 041017 50 LGVVIVYGISQGLGGALARVGTQYYMKD-VQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVL--PIFGYRRRPYFILAGC 126 (499)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~--~~~g~~Rk~~ll~~~~ 126 (499)
.++.++| +.||++-++....+|..+++ ..++|.+|.|.+ ++...|+.++.+|.|+.|.+ +..| |||.|++-...
T Consensus 3 ~lL~~LY-~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~f-Sla~~PfSlKlLWaPiVDs~y~~~~G-RRKSWiiP~Q~ 79 (544)
T PF13000_consen 3 ALLVLLY-FLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIF-SLASYPFSLKLLWAPIVDSVYSKRIG-RRKSWIIPIQY 79 (544)
T ss_pred eHHHHHH-HHcCcccccccccchhhhccccCCCChhHheee-eeeechhHHHHhhhhhhhhhcccccC-CcchhhhHHHH
Confidence 4556788 89999877765667766653 168899999966 78888999999999999966 3445 88899998888
Q ss_pred HHHHHHHHHHhccc----------------------hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHH
Q 041017 127 LGVFSMLLLSMHEK----------------------LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQS 184 (499)
Q Consensus 127 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~ 184 (499)
+..+.++.++..-+ .....+....++.-+-.+.+|+++|++...+.+ +++++.+.+
T Consensus 80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls--~~n~~~AST 157 (544)
T PF13000_consen 80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLS--PENVGYAST 157 (544)
T ss_pred HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcC--hhhcchHHH
Confidence 87777666654320 010011223334556678899999998877763 456776666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhc-ccC---hh------------HHHHHHHHHHHHH-HHHHhcccCCCCCC-----cc--
Q 041017 185 LCSLCSAIGALIGYSISGIFVH-LIG---PK------------GVFGLMTIPAGLL-ILVGILLNEPQVPD-----FN-- 240 (499)
Q Consensus 185 ~~~~~~~~G~~lg~~l~g~l~~-~~g---w~------------~~f~~~a~~~~~~-~~~~~~~~e~~~~~-----~~-- 240 (499)
.-..+.+.|..++..+--.+-+ .+. +| .-..+.+...++. ..+.++-+|++... ++
T Consensus 158 cqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~ 237 (544)
T PF13000_consen 158 CQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPIN 237 (544)
T ss_pred HHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccc
Confidence 5445555555555433322221 000 01 0112334444444 34455556543211 00
Q ss_pred ------------hhh-------hhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChh
Q 041017 241 ------------YKQ-------VNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQE 301 (499)
Q Consensus 241 ------------~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 301 (499)
.++ +....++..+.+++++|-|.+....+..+...+.. ..+.+...+..- +.|++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF-~a~da~T~LKLl---EkG~~KE 313 (544)
T PF13000_consen 238 KSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGF-QANDAVTSLKLL---EKGLSKE 313 (544)
T ss_pred cccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhcc-ccchhhhHHHHH---HcCCCHH
Confidence 000 01124566678889999999877777666666542 222322122111 2788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCc---------------------------hhHHHHHHHHHHHHhhhhhhhhhh
Q 041017 302 TVGFVLSVGPVGSILAAILYQNSLKDYPF---------------------------QDVLFWAQLLSGLSGMLDLLLVLR 354 (499)
Q Consensus 302 ~~g~~~~~~~i~~i~g~~l~~~~~~~~~~---------------------------r~~l~~~~~~~~~~~l~~~~l~~~ 354 (499)
..+.+..+-....++.++..+|+.+.... -+....+.....+..+.....+..
T Consensus 314 ~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~ 393 (544)
T PF13000_consen 314 DLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYF 393 (544)
T ss_pred HhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEe
Confidence 88887777777777778888888754331 122233333333222211111111
Q ss_pred cccccCCCchhhH--HHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 355 LNLKFGIPDFVAL--VIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 355 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
....-.++...+. +...++..+....++++..++-+++.+|..-||++.+.|.+.|+|+.-...+.=++.|.+..
T Consensus 394 fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~ 470 (544)
T PF13000_consen 394 FPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTV 470 (544)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccc
Confidence 1001113333332 33456777888888888899999999999999999999999999999888888888887654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-13 Score=131.09 Aligned_cols=321 Identities=17% Similarity=0.159 Sum_probs=200.8
Q ss_pred HhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHH
Q 041017 74 YMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTA 152 (499)
Q Consensus 74 ~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (499)
-+++++|+|.+.+|++.++-.+.+.. .|+..++..|+ +-++.+..+.++.+++...=... +.. .++..-.+
T Consensus 37 ~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-----g~er~l~~~Llli~~G~~iR~~~-~~~--~L~~gt~l 108 (395)
T COG2807 37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-----GEERSLFLALLLIAAGILIRSLG-GLP--LLFLGTLL 108 (395)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----hhHHHHHHHHHHHHHHHHHHhcc-cHH--HHHHHHHH
Confidence 56889999999999999999888875 99999999987 33345556666666665544433 222 23445566
Q ss_pred HHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc-ChhHHHHHHHHHHHHHHHHHhcc
Q 041017 153 SSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI-GPKGVFGLMTIPAGLLILVGILL 231 (499)
Q Consensus 153 ~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~-gw~~~f~~~a~~~~~~~~~~~~~ 231 (499)
.++|.+..++.-.+++-+- .|++-+.+++++.....+|..+++.+.-.+.++. |||....+.++++++.++.++
T Consensus 109 ~G~gIav~nVLLPslIK~~---Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl-- 183 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRD---FPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL-- 183 (395)
T ss_pred HHhhHHHHHHhhhHHHHhh---cccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh--
Confidence 7788877776666665543 4677899999999999999999999988888876 799998888888877655543
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHH
Q 041017 232 NEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGP 311 (499)
Q Consensus 232 ~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 311 (499)
|...+.+.+..+ ....+..++.|+|..|...+|+-+.+..+. .+..|+....-+.|+|..+.|.+.+...
T Consensus 184 Pq~~r~~~~~~~------~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y----~~~~WLP~ili~~G~sa~~aG~llsl~~ 253 (395)
T COG2807 184 PQALREQAASIA------TKLVSVRKVWRSPLAWQVTLFMGLQSLLYY----IVIGWLPAILIDRGLSAAEAGSLLSLMQ 253 (395)
T ss_pred hhcccccccccc------cccccccccccCchhHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCCCHHHhhhHHHHHH
Confidence 432111111000 000111245679988988877655443321 1123333322237899999998777666
Q ss_pred HHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHH-
Q 041017 312 VGSILAAILYQNSLKD-YPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLS- 389 (499)
Q Consensus 312 i~~i~g~~l~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~- 389 (499)
+..+..+++...+.+| .+.|.......+++.+..+ -+.+.+..+ +..+ ..+.+...+..+.-..+++
T Consensus 254 l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~-G~~~~P~~~-----~~lw-----~~llG~G~G~~F~laL~li~ 322 (395)
T COG2807 254 LAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV-GLLLAPGQL-----PILW-----ALLLGLGQGGAFPLALTLIL 322 (395)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHhhhhH-----HHHH-----HHHHhCccchHHHHHHHHHH
Confidence 6666666666666553 4455555444444433222 222222111 1111 1222333232222222333
Q ss_pred HhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 390 SRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 390 ~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
.+.-.++..+...|+.+.++.+=...||.+.|++-|..|
T Consensus 323 ~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 323 LRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred hhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 344556677788888888888889999999999999875
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-13 Score=132.25 Aligned_cols=264 Identities=13% Similarity=0.102 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc----------------c
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL----------------I 208 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~----------------~ 208 (499)
.+++..++.+.|.+..++..+++++++.+ ++++.+.+++.+...++|.+++|.+++.++.. .
T Consensus 12 ~~l~~~f~~g~G~~~lq~~~n~~v~~~~~--~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (310)
T TIGR01272 12 LFLGALFVLASGLTILQVAANPYVSILGP--IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAA 89 (310)
T ss_pred HHHHHHHHHHhhHHHHHhhHHHHHHHHCC--cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHH
Confidence 34567788999999999999999999874 45688889999999999999999999987731 3
Q ss_pred ChhHHHHHHHHHHHHHHHHHh--cccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccce
Q 041017 209 GPKGVFGLMTIPAGLLILVGI--LLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLF 286 (499)
Q Consensus 209 gw~~~f~~~a~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 286 (499)
+|+++|++.+....++.+.+. ..||.+++++++.+. + +. .+.++.+++|.++...+..|++.....+..+...
T Consensus 90 ~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~ 164 (310)
T TIGR01272 90 KVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSS-G---DT-TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLV 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCccccccccc-c---cc-cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999876666554433333 346543322111000 0 00 0112345677776666666665433222222111
Q ss_pred eEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 041017 287 YWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVA 366 (499)
Q Consensus 287 ~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 366 (499)
.|..+ .+.+|+++.+.+........+.++|.++.+++.+|++.|+.+.++.++..+..+. .... +....
T Consensus 165 ~yl~~-~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l-~~~~---------~~~~~ 233 (310)
T TIGR01272 165 NFLSD-PHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIG-AALT---------HGYVA 233 (310)
T ss_pred HHHHh-cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH-HHHc---------CCHHH
Confidence 22221 1236889999999888888999999999999999999999887766555543221 1110 11111
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 367 LVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 367 ~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
.. ...+.++..+..+....+...+..|++ .+++.++. .+..+|..+.|.+.|.+.|..|+
T Consensus 234 ~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~ 293 (310)
T TIGR01272 234 MW-FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI 293 (310)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence 11 112233444444444456666767653 45666664 56778999999999999998764
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-12 Score=129.25 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=108.2
Q ss_pred cCCChhHHHHHHHhh-hchhhhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc--chHHHHHHHHHHHHHh
Q 041017 79 QKVQPSEAQVYAGIT-SLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE--KLHLVFAVSALTASSA 155 (499)
Q Consensus 79 ~g~s~~~~g~~~~~~-~l~~~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 155 (499)
+|+|.+++.-..+.+ .+.|....+.|+++||+ -++|+.+..+.++.+++.+.++.++ +... +.+.+.+..+
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~----LG~~~tI~lGail~~iGh~~L~~~~~~~~~g--l~i~L~~I~i 129 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRV----LGTRRTIVLGAILMAIGHLVLAISSVSGPGG--LYIGLALIIV 129 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHHhccccccccH--HHHHHHHHHh
Confidence 449888876666655 45566566799999998 3666778899999999999888874 3332 2344455568
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHH
Q 041017 156 GIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLI 225 (499)
Q Consensus 156 g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~ 225 (499)
|.+..-+...++++|..++++.+|-...++.+++.++|+.++|.+.+++.+..||+..|.+.++-..+.+
T Consensus 130 G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl 199 (498)
T COG3104 130 GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGL 199 (498)
T ss_pred ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 8887777778899999876544576778888999999999999999999999999999988776555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=120.16 Aligned_cols=303 Identities=17% Similarity=0.134 Sum_probs=176.4
Q ss_pred hhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCC
Q 041017 98 IVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPS 177 (499)
Q Consensus 98 ~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~ 177 (499)
...|++|.+|||+ +||..+.+....+.+....+.+.. ++ .++ ..-..-+.+.......++++|.+++ +
T Consensus 77 i~s~~iG~lSD~~-----grk~~L~~~~~~~~l~~~~~~~~~-~~--~~~--~~~l~g~~~~~~s~~~a~vadis~~--~ 144 (463)
T KOG2816|consen 77 ISSPLIGALSDRY-----GRKVVLLLPLFGTILPALCLLFQG-YW--FFL--LLGLSGGFSAIFSVGFAYVADISSE--E 144 (463)
T ss_pred HHHhhhHHhhhhh-----hhhhhHHHHHHHHHHhHHHHHHHH-HH--Hhh--hcccccchhhhhhhhhhheeeccch--h
Confidence 3489999999996 788888877777666655555543 22 111 1111112223334456777887743 5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH-HHHHhcccCCCCCCcch----------hhhhH
Q 041017 178 LASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL-ILVGILLNEPQVPDFNY----------KQVNL 246 (499)
Q Consensus 178 ~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~----------~~~~~ 246 (499)
+|....++.+.....+..++|.+++.+....|.-.+|.+.++..++. ....+++||+..++++. +....
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~ 224 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSS 224 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccch
Confidence 89999999999999999999999999998888888888877766665 44567789876554322 00001
Q ss_pred HHHHHHHHHHHHccC-cchhhHHHHHhhhhhcc-ccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHH-HHHH
Q 041017 247 KFLDAGKAMWTTLKF-PLVWRPCLYMYLSFAVS-LNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAI-LYQN 323 (499)
Q Consensus 247 ~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~-l~~~ 323 (499)
...+..+...+ .++ |..+......++..... .......+++.... +++++.+.+.+.+.......++.. ....
T Consensus 225 ~~~~~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~---f~w~~~~~s~~~~~~~~~~~i~~l~~~~~ 300 (463)
T KOG2816|consen 225 HVADAFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK---FGWNKKEFSDLLSLVSILGIISQLLLLPL 300 (463)
T ss_pred hhhhhhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee---cCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222 222 33333333333222211 11111233333333 899999998776544444444443 3345
Q ss_pred HhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHH
Q 041017 324 SLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFA 403 (499)
Q Consensus 324 ~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~g 403 (499)
+.+..+.|++...+.....+..+ .....++. ...+... +.............+..+...+++.+|++++
T Consensus 301 l~~~l~~~~~i~lGl~~~~~~~~---~~af~~~~-----w~~~~~~---v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~ 369 (463)
T KOG2816|consen 301 LSSILGEKRLISLGLLSEFLQLL---LFAFATET-----WMMFAAG---VVVALAGIVFPAIRAFASILVSPEEQGKVFG 369 (463)
T ss_pred HHHHHhhhhHhhHHHHHHHHHHH---HHHHhccc-----hhhhHHH---HHHHhhcchhHHHHhHHHhhcccccccchhh
Confidence 55666777765555544444221 12222221 1112111 1112222223334578888999999999999
Q ss_pred HHHHHHhhHHHhHHHHHHHHHHHh
Q 041017 404 LLMSIDNAGVLSSSWGGGLLLHIL 427 (499)
Q Consensus 404 l~~~~~~lg~~ig~~l~g~l~~~~ 427 (499)
+.+.+..++..++|.+-+.+...+
T Consensus 370 ~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 370 IISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999888777654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-13 Score=125.87 Aligned_cols=364 Identities=16% Similarity=0.137 Sum_probs=195.1
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh---ccchHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM---HEKLHL 143 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~---~~~~~~ 143 (499)
+.++..+.+.+.++..++..++.+++..|-++ ..+.|++.||. +| -|--.++.+.++ .++-+..+. .+.++
T Consensus 63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~--fg-ir~gtii~~~fv-~~GqliFa~Ggi~~aFw- 137 (459)
T KOG4686|consen 63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR--FG-IRLGTIILCIFV-FLGQLIFAAGGISHAFW- 137 (459)
T ss_pred chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh--hh-hhHHHHHHHHHH-HHHHHHHHhchHHHHHH-
Confidence 44555677888999999999999999999876 66799999974 12 121222233222 223222221 23344
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh------hHH---H
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP------KGV---F 214 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw------~~~---f 214 (499)
.....|++.|+|.-.-.++.+.+.+-..+ .++-+.+.|+.....-+|+.+--.+.+++.+..+- +.. .
T Consensus 138 -~M~~GRF~FGIGgESlAVaQN~yav~wFK--GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~ 214 (459)
T KOG4686|consen 138 -TMLAGRFLFGIGGESLAVAQNKYAVYWFK--GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLW 214 (459)
T ss_pred -HHHhhheeeccCchhhhhhhcceeEEEec--CccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHH
Confidence 23567888777765444445555443332 35677888887777778877666666666654321 111 1
Q ss_pred HHHHHHHHHHHHHH---hcccCCCCCCcchhhhhHHHHHHHHHHH--HHccCcchhhHHHHHhhhhhc-cccccccceeE
Q 041017 215 GLMTIPAGLLILVG---ILLNEPQVPDFNYKQVNLKFLDAGKAMW--TTLKFPLVWRPCLYMYLSFAV-SLNIHEGLFYW 288 (499)
Q Consensus 215 ~~~a~~~~~~~~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 288 (499)
...+......-+.+ .-.-+++.+..-+++ +.+..+...+. ..+ .|++|...+..+++... .|.+.-. ..+
T Consensus 215 l~~~~~tc~~slical~lg~~D~rAerilh~e--~g~~Ge~pkLtdv~~f-~ppfw~~~iicv~yyva~fPFi~lg-~~f 290 (459)
T KOG4686|consen 215 LCFEVKTCKQSLICALSLGLSDDRAERILHLE--EGFLGEEPKLTDVNTF-YPPFWVLVIICVLYYVAWFPFITLG-PMF 290 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh--cCcccCCccccccccc-CccHHHHHHHHHHHHHHHHHHhhhh-HHH
Confidence 11111111111111 111111111000000 00000000010 112 36677765554443322 1222111 122
Q ss_pred EecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHH
Q 041017 289 YTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALV 368 (499)
Q Consensus 289 ~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 368 (499)
.+ +.+|+|+...+-+.+....-+.+-+.+.|.+.||+|++-....+..+..+..=. .+..+.++.+ .
T Consensus 291 F~---~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~-~l~Ft~lsPy-------~-- 357 (459)
T KOG4686|consen 291 FQ---KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHS-GLFFTFLSPY-------T-- 357 (459)
T ss_pred HH---HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhh-hHHhhhccHH-------H--
Confidence 23 348999888777665433333444566777889998877665554433332110 1111122211 0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHh
Q 041017 369 IDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILR 448 (499)
Q Consensus 369 ~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~ 448 (499)
...+.+..+.+..-..+..++.+.|+++.||+||...++.|+|-++.|.++|.+.|.-| .|..+-.+++++..++
T Consensus 358 -~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g----~y~~le~ffl~~~~~a 432 (459)
T KOG4686|consen 358 -SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG----SYDNLEAFFLIIGLMA 432 (459)
T ss_pred -HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC----chhhHHHHHHHHHHHH
Confidence 11122222222222234567778999999999999999999999999999999998643 4777777777777777
Q ss_pred HHHHHHHhhcCCC
Q 041017 449 ITPLCVIFLVPRG 461 (499)
Q Consensus 449 li~l~~~~~lp~~ 461 (499)
+.....++.+.++
T Consensus 433 L~svgil~~~N~k 445 (459)
T KOG4686|consen 433 LTSVGILFYLNKK 445 (459)
T ss_pred HHHHHHHhheecc
Confidence 7776666655443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=123.70 Aligned_cols=174 Identities=15% Similarity=0.134 Sum_probs=115.7
Q ss_pred hhccchhhhhhhhHHHHhhh-ccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKD-VQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLL 135 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~-~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~ 135 (499)
|..+...+++....-+|+++ |.+.+++-.|++.++..++..+ .|.+|+++.|. ++-||| ++.+.++.+++.+..
T Consensus 44 fl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~---~~~k~P-li~s~ii~~~g~llY 119 (488)
T KOG2325|consen 44 FLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT---GSVKKP-LIVSFLIAIIGNLLY 119 (488)
T ss_pred HHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc---CCcccC-HHHHHHHHHHHHHHH
Confidence 55666555444444456654 4788888899999999999886 99999999986 223555 567777777777665
Q ss_pred -H--hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc--cC-
Q 041017 136 -S--MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL--IG- 209 (499)
Q Consensus 136 -~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~--~g- 209 (499)
+ +.++......+..|++.|+|.+...+ -.+++++.+. +++|.++++....+..+|.++||.+...+... -|
T Consensus 120 ~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~--~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~ 196 (488)
T KOG2325|consen 120 LALAYVPNGVKYLMLVARILTGVGVGNFAV-LRAYIADAST--VEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF 196 (488)
T ss_pred HHHHhcccchHHHHHHHHHHcCcCcccHHH-HHHHHHhccC--ccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce
Confidence 3 33442333456788999999765543 5778777653 46788888888888888888888776544321 01
Q ss_pred -------h---hHHHHHHHHHHHHH-HHHHhcccCCCCCC
Q 041017 210 -------P---KGVFGLMTIPAGLL-ILVGILLNEPQVPD 238 (499)
Q Consensus 210 -------w---~~~f~~~a~~~~~~-~~~~~~~~e~~~~~ 238 (499)
| ..+-|++++..++. +++.++++|.++..
T Consensus 197 ~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 197 MILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred EEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 1 23445556655554 34556778876554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=119.33 Aligned_cols=153 Identities=19% Similarity=0.111 Sum_probs=112.1
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
.-+.|.|+.|+.|.|..++++..+++=.+-.. ..++|++||+.. +.||.|.-+++.+...++....-.+++.+..+.
T Consensus 272 ~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklf--kgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~ 349 (448)
T COG2271 272 NDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLF--KGRRGPMALIFMLLITASLVLYWLAPNGSYLLD 349 (448)
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 44666788999999999999999988777776 456999999973 347778777777777777766666665543334
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHH-HHHHHHHHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAI-GALIGYSISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~-G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
.++++..|+..-..+........|..++ +-.|.+.|+...+..+ |.+.+....|++.+.+||...|.+..+..++.
T Consensus 350 ~~~l~~iGf~IyGPqmLiGl~a~e~~pK--~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~ 426 (448)
T COG2271 350 AILLFIIGFLIYGPQMLIGLAAAEFVPK--KAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLA 426 (448)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccccH--hhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHH
Confidence 4455555655444444555555677743 5688899998888877 88888888888889999999998876665554
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=117.49 Aligned_cols=147 Identities=10% Similarity=0.056 Sum_probs=104.3
Q ss_pred cCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHH
Q 041017 79 QKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGI 157 (499)
Q Consensus 79 ~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 157 (499)
.+.+..+.|.+.++..+..++ .++.|+++||+ +||+.+..+..+..+...+++++++.+.. ....++.+++.
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~l~g~~~ 329 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-----GAKNALLLAGTIMAVRIIGSGFATGPLEV--SILKLLHAFEV 329 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcchhhHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHH
Confidence 367778889888888777665 88999999997 45556666677777777777777776532 33455566666
Q ss_pred HHHHHHHHHHHHhhccCCCCcccchHHH-HHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHH-HHHhcccCC
Q 041017 158 AIADVTIDACVAQNSICHPSLASDMQSL-CSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLI-LVGILLNEP 234 (499)
Q Consensus 158 ~~~~~~~~alv~e~~~~~~~~rg~~~~~-~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~-~~~~~~~e~ 234 (499)
+........++.|..+ ++.|+...+. .+....+|.++++.++|++.+.+||+.+|.+.++..++.. +..+..+++
T Consensus 330 ~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 330 PFLLVGVFKYITLNFD--VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHHHHHHcC--ccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5554445556666653 3566666544 5677889999999999999999999999998877766553 334445544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-10 Score=109.49 Aligned_cols=336 Identities=15% Similarity=0.074 Sum_probs=171.7
Q ss_pred HhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccch---HHHHHHHH
Q 041017 74 YMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKL---HLVFAVSA 149 (499)
Q Consensus 74 ~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 149 (499)
+.++.+| +....-|...++++.+.. ....-|+.|++ +=|...+++..+.+++..+=..+... +....-+.
T Consensus 70 ~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-----GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~ 143 (480)
T KOG2563|consen 70 YVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-----GLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLT 143 (480)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-----chHHHHHHHHHHHHHHHHHhhhccCccccccchhhhh
Confidence 4455677 666667777777777764 77788999986 55666777777777776664443221 11110111
Q ss_pred HHHHHhHHHHHHHHHHHH---HHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc------cChhH--HHHHHH
Q 041017 150 LTASSAGIAIADVTIDAC---VAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL------IGPKG--VFGLMT 218 (499)
Q Consensus 150 ~~l~~~g~~~~~~~~~al---v~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~------~gw~~--~f~~~a 218 (499)
...+.+. +.+++....+ +++.+- .|++|..+.+...++..+|..+|.++...+..+ ..|.. +|...+
T Consensus 144 ~~Gq~ia-a~Aq~Fim~lPskiA~~WF-~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~ 221 (480)
T KOG2563|consen 144 HTGQSIA-AAAQPFILGLPSKIAAVWF-PPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVE 221 (480)
T ss_pred HHhHHHH-HHhhhHhhccccHHHHhhC-CcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHH
Confidence 1112221 2222222222 333321 357899988888888888888888777666543 23432 344334
Q ss_pred HHHHHHH-HHHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCC
Q 041017 219 IPAGLLI-LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPS 297 (499)
Q Consensus 219 ~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 297 (499)
+...+.+ +..+..+|+|+.+....+.+.+-.+..+.+.+.++|+++...++..-+.. +.....++.+.....--|
T Consensus 222 ~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~----g~F~~l~~~l~~~l~~sg 297 (480)
T KOG2563|consen 222 CLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGIGL----GLFNSLSTLLNLALCPSG 297 (480)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhH----HHHHHHHHHhhhcccccc
Confidence 4333332 23334455444332211111111123455678889988654432221111 011111111110111134
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHH
Q 041017 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDV-LFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRM 376 (499)
Q Consensus 298 ~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~-l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (499)
++....|+......++.++|+.+.+.+.||.+.-+. ..+......+..+. +.... . .....+.+.....+.++
T Consensus 298 Y~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~--l~~~t-~---~~~~~viv~~t~~~~g~ 371 (480)
T KOG2563|consen 298 YEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLM--LLTCT-L---FLGDSVIVFTTCGLLGF 371 (480)
T ss_pred CCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--HHHhh-c---cCCceEehhhhHHHHHH
Confidence 555666777777788888999999999998755443 33332222222111 11111 0 01111111111122222
Q ss_pred HHHhhhhHH-HHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 377 VGQLKWMPL-LVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 377 ~~~~~~~p~-~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+ +....|. .-+..|..-|..|++..|+.+.++++=+.+=..+-+...+..+
T Consensus 372 ~-~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 372 F-GTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred h-hcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence 2 2234453 2445566667788999999888888766666666666665444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.4e-10 Score=116.50 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=102.2
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHH-HH--hccchH
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLL-LS--MHEKLH 142 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~-~~--~~~~~~ 142 (499)
.....+.++++++|.++.+.++..+...++..+ .|+.|+++||+ +||+.++.+.+...+.... .. .+++..
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-----GRRPFVILGSVALFVLAIPAFILINSNVIG 343 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 344566778778899988877776666677665 78899999997 5666666655433322221 21 223332
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc-ChhHHHHHHHHHH
Q 041017 143 LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI-GPKGVFGLMTIPA 221 (499)
Q Consensus 143 ~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~-gw~~~f~~~a~~~ 221 (499)
. ....+++.+++.+.......+++.|..+ ++.|+...++.+....+++.++|.+.+++.+.. +|+..+++..++.
T Consensus 344 ~--~~~~~~~~g~~~~~~~g~~~~~~~~~~p--~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~ 419 (490)
T PRK10642 344 L--IFAGLLMLAVILNCFTGVMASTLPAMFP--THIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA 419 (490)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHCC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 2 2233444444444333344566677764 468999888754445566678888888888754 4777766666665
Q ss_pred HHHHHHHhcccCCCCCC
Q 041017 222 GLLILVGILLNEPQVPD 238 (499)
Q Consensus 222 ~~~~~~~~~~~e~~~~~ 238 (499)
++..+..+++||++++.
T Consensus 420 ~i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 420 VIGLITGVTMKETANRP 436 (490)
T ss_pred HHHHHHHHHhccccCCC
Confidence 55555556679987764
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-10 Score=112.63 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=106.6
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAV 147 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (499)
...+.|+++++|.++.+.+.+.+...+...+ .++.|+++||+ +||+.+..+.....+....+.+.++.+. .+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l 309 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-----GKRFLMRVAAVAGVCFYAGMLMAHSPAI--LL 309 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHHhhHHH--HH
Confidence 3556677888999999999887765554444 78899999997 4555555555554444444444454432 22
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILV 227 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~ 227 (499)
..+++.+++.+...........|.. |++|++.+++.+...++|..+++.++|.+.+++||+.+|++.+++.++.++.
T Consensus 310 ~~~~l~~~~~g~~~~~~~~~~~~~~---p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK15011 310 GLQLLNAIYIGILGGIGMLYFQDLM---PGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC 386 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3334444444444334445556665 3468999999988899999999999999999999999998877766665555
Q ss_pred HhcccC
Q 041017 228 GILLNE 233 (499)
Q Consensus 228 ~~~~~e 233 (499)
.++.||
T Consensus 387 ~~~~~~ 392 (393)
T PRK15011 387 LLRIKD 392 (393)
T ss_pred HHhhcC
Confidence 566664
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-10 Score=115.91 Aligned_cols=147 Identities=12% Similarity=0.228 Sum_probs=106.8
Q ss_pred hHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc-ch-HHHHHHHHHHHHHhHHHHH
Q 041017 84 SEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE-KL-HLVFAVSALTASSAGIAIA 160 (499)
Q Consensus 84 ~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~g~~~~ 160 (499)
.+.+...++..+..++ +++.|.++||+ +||+.++.+.++..++...+...+ +. ....+....++.+++.+..
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~-----g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~ 325 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRF-----GIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFF 325 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5668777777777665 78899999997 677788888887777766665532 22 1122334456677777666
Q ss_pred HHHHHHHHHhhccCCCCcccchHHHHH-HHHHHHHHHHHHHHhHhhcc------cChhHHHHHHHHHHHHH-HHHHhccc
Q 041017 161 DVTIDACVAQNSICHPSLASDMQSLCS-LCSAIGALIGYSISGIFVHL------IGPKGVFGLMTIPAGLL-ILVGILLN 232 (499)
Q Consensus 161 ~~~~~alv~e~~~~~~~~rg~~~~~~~-~~~~~G~~lg~~l~g~l~~~------~gw~~~f~~~a~~~~~~-~~~~~~~~ 232 (499)
.+....++.|..+ +++|++.+++.+ ...++|.++||+++|++.++ +||+.+|.+.++..++. ++..+++|
T Consensus 326 ~~~~~~~i~~~~p--~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 326 NISGSVFVEKEVP--VHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHCC--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6666677788764 368999999997 56789999999999999886 56999998887776665 44566678
Q ss_pred CCCCC
Q 041017 233 EPQVP 237 (499)
Q Consensus 233 e~~~~ 237 (499)
|+.+.
T Consensus 404 ~~~~~ 408 (418)
T TIGR00889 404 YSHNA 408 (418)
T ss_pred CcccC
Confidence 76443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-10 Score=115.71 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=95.1
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
..+.+.|+++++|+++.+.+...++..++..+ .++.|+++||+.. ++||+......+...++...+...+.......
T Consensus 263 ~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
T PRK11663 263 NDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN--GNRGPMNLIFAAGILLSVGSLWLMPFASYVMQ 340 (434)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc--CCccHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence 34556778778999999999988888887776 7789999999731 13333222211111111111111121111111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHH
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL 226 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~ 226 (499)
....+..+++...........+.|.. ++++|+..+|+.+....+|..++|.+.|++.++.||+..|...++..++..+
T Consensus 341 ~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~ 418 (434)
T PRK11663 341 AACFFTIGFFVFGPQMLIGMAAAECS--HKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISAL 418 (434)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcc--cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 11222223322111111223345554 3468999999999999999999999999999999999999888777666533
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-10 Score=115.21 Aligned_cols=144 Identities=14% Similarity=0.043 Sum_probs=105.3
Q ss_pred HHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHH
Q 041017 72 QYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSAL 150 (499)
Q Consensus 72 ~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (499)
+++. +++|.++.+.+...++..+...+ .++.|+++||+ +||+.+..+..+..++...+.+.++..........
T Consensus 229 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T TIGR00890 229 KPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-----GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATV 302 (377)
T ss_pred HHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 3454 46889998899888888777766 88899999997 56666777777777776666665543221122223
Q ss_pred HHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHH
Q 041017 151 TASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGL 223 (499)
Q Consensus 151 ~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~ 223 (499)
.+.+++.+.......+++.|..+ +++|++..++.+....+|..++|.+.|.+.+..||++.|.+.++..++
T Consensus 303 ~~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 303 ALVFFTWGGTISLFPSLVSDIFG--PANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHHHHhccchhccHHHHHHHhh--hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 44455555444455667778764 468999999999999999999999999999999999999887765544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-10 Score=116.55 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=95.3
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHH--HHHhccchHH
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSML--LLSMHEKLHL 143 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~--~~~~~~~~~~ 143 (499)
...+.|.|+++++|+|+.+.++..++..++..+ .++.|+++||+ + |||. ++.......++.. .....++...
T Consensus 277 ~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~---g-~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (467)
T PRK09556 277 IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA---N-GRRA-LVACIALALIIFTLGVYQHATSEYM 351 (467)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-CCch-HHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 345667788888999999999988888777766 88999999997 2 3443 3333222222221 2222233322
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHH-HHHHHHHHHhHhhc------------ccCh
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAI-GALIGYSISGIFVH------------LIGP 210 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~-G~~lg~~l~g~l~~------------~~gw 210 (499)
....+++.|+..............|..+ ++.||.+.|+.+...++ |..++|.+.|.+.+ ..+|
T Consensus 352 --~~~~~~~~G~~~~~~~~~~~~~~~~~~p--~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~ 427 (467)
T PRK09556 352 --YLASLFALGFLVFGPQLLIGVAAVGFVP--KKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGW 427 (467)
T ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccCh
Confidence 1223333343221111122244556663 36899999999988886 77999999999999 5689
Q ss_pred hHHHHHHHHHHHHH
Q 041017 211 KGVFGLMTIPAGLL 224 (499)
Q Consensus 211 ~~~f~~~a~~~~~~ 224 (499)
+..|++.++..++.
T Consensus 428 ~~~f~~~~~~~~~~ 441 (467)
T PRK09556 428 AGTFAALDIAAIGC 441 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998876655554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=109.95 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=107.8
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVS 148 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (499)
..+.++++++|.++.+.+...+........ .++.|+++||+ +||+.+.++.+...+........++.+. ...
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 293 (375)
T TIGR00899 221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-----GKRRLMLLAALAGVAFYTGLAADNSLWA--LLM 293 (375)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 445567778999999999877665444443 77899999996 4555666665555544444444444432 223
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHH
Q 041017 149 ALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVG 228 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~ 228 (499)
...+.+++.+...+....+..|.. |+++++.+++.+...++|..++|.++|.+.+..||+..|++.++..++..+..
T Consensus 294 ~~~~~g~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 294 LQLLNAIFIGILAGIGMLYFQDLM---PGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 445556666655555566667765 34567889999999999999999999999999999999998887766655555
Q ss_pred hcccC
Q 041017 229 ILLNE 233 (499)
Q Consensus 229 ~~~~e 233 (499)
.++||
T Consensus 371 ~~~~~ 375 (375)
T TIGR00899 371 LLIKD 375 (375)
T ss_pred heecC
Confidence 55554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-10 Score=95.24 Aligned_cols=131 Identities=26% Similarity=0.360 Sum_probs=98.8
Q ss_pred hchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 041017 94 SLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNS 172 (499)
Q Consensus 94 ~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~ 172 (499)
.++..+ +|+.|+++||+ +||+.+..+.....++.+.+...++.+. ....+++.+++.+...+...+++.|..
T Consensus 8 ~~~~~~~~~~~g~~~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRF-----GRKPVLLVGLFIFVLSTAMFALSSNITV--LIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred hhHHHHHHhhHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 334444 88899999996 5666677777777777777777666553 234557777887777777888888887
Q ss_pred cCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHH-HHhcccC
Q 041017 173 ICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL-VGILLNE 233 (499)
Q Consensus 173 ~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~-~~~~~~e 233 (499)
+ +++|++.++..+....+|..+++.+++.+.+..+|++.|++.++...+..+ ..+..||
T Consensus 81 ~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 81 P--PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred C--hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4 357999999999999999999999999999988999999887776665533 3444554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-09 Score=110.71 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=98.5
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc-----cch
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH-----EKL 141 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~-----~~~ 141 (499)
....|.|++ ++|.++.+.+...+...++..+ .++.|+++||++ |||+....+.+...++...+.+. ++.
T Consensus 242 ~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~----~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 316 (402)
T TIGR00897 242 AVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLG----WMNTVRWFGGVGCGIFTLALYYIPQHFGHSF 316 (402)
T ss_pred HHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHHHHHHccCCcH
Confidence 335566765 5899999998887777777665 889999999972 44443323322223322222221 232
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 142 HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 142 ~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
.. .....++.+++.+... +..+.+.|. .|++|++..|+.+....+|..++|.++|.+.+..||+.+|++.++..
T Consensus 317 ~~--~~~~~~~~G~~~~~~~-~~~~~~~~~---~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~ 390 (402)
T TIGR00897 317 AV--ALIIAIALGIFLAGYV-PLAAVFPTL---APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALY 390 (402)
T ss_pred HH--HHHHHHHHHHHHHHHH-HHHHHHHhh---CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 22 2233344455544332 233444454 34679999999999999999999999999999999999999888776
Q ss_pred HHHHHHHh
Q 041017 222 GLLILVGI 229 (499)
Q Consensus 222 ~~~~~~~~ 229 (499)
++..+...
T Consensus 391 ~i~~~~~~ 398 (402)
T TIGR00897 391 VVSAFLTA 398 (402)
T ss_pred HHHHHHHH
Confidence 66544333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=110.48 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=95.8
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHH-HHHH-HHHHhc--cch
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLG-VFSM-LLLSMH--EKL 141 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~-~~~~-~~~~~~--~~~ 141 (499)
.....+.++++++|.++.+.+...+...+...+ .++.|+++||+ +||+.++.+..+. ..+. ....+. ++.
T Consensus 238 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (394)
T TIGR00883 238 ITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-----GRRPVLIIFTVLAALLAVPLLMALLDSGSF 312 (394)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 344556677778999999999888877777665 88999999997 4444444333322 2221 122222 222
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHH-HHHHHHHHHHHHHHHhHhhcccC-hhHHHHHHHH
Q 041017 142 HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLC-SLCSAIGALIGYSISGIFVHLIG-PKGVFGLMTI 219 (499)
Q Consensus 142 ~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~-~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~~~a~ 219 (499)
. .......+.+++.+...+...+++.|..++ ++|++..++. +.+..+|..++|.++|.+.++.| |+..++...+
T Consensus 313 ~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 313 T--LFFFLVLGLALIGGMYTGPMGSFLPELFPT--EVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred H--HHHHHHHHHHHHHHHHhhhHHHHHHHhCCc--cceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 2 222334555666666666778888888753 5788888864 55667899999999999999888 8877665444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=111.10 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=93.6
Q ss_pred HHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHH
Q 041017 87 QVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTID 165 (499)
Q Consensus 87 g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 165 (499)
+.+.++..++..+ .|++|+++||+ +||+.+..+..+..++.+...+.++.+. .....++.+++.+...+...
T Consensus 261 g~~~~~~~l~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~ 333 (408)
T PRK09874 261 GMIASVPGVAALLSAPRLGKLGDRI-----GPEKILITALIFSVLLLIPMSFVQTPLQ--LGILRFLLGAADGALLPAVQ 333 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHhhhHhhHHHHH
Confidence 4444444455444 78899999997 5566666676666666655555555443 23344556777666666556
Q ss_pred HHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHH
Q 041017 166 ACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILV 227 (499)
Q Consensus 166 alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~ 227 (499)
+++.+.. ++++||+.++..+....+|..+||.++|.+.+.+||+..|++.++..++..+.
T Consensus 334 ~~~~~~~--~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 393 (408)
T PRK09874 334 TLLVYNS--SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVY 393 (408)
T ss_pred HHHHHhC--CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 6665554 34678999999999999999999999999999999999999888776665443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-09 Score=111.93 Aligned_cols=359 Identities=12% Similarity=0.074 Sum_probs=220.9
Q ss_pred HhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHH
Q 041017 56 YGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLL 134 (499)
Q Consensus 56 ~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~ 134 (499)
..+.|++..+.....++ .+++.++++.++.|++.+.+-++..+ ..+..+..-|. +|-+++-++.++.+++.++
T Consensus 105 ~~~~q~l~~~y~~s~It-tiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-----HrPr~Ig~G~~~m~lgsll 178 (735)
T KOG3626|consen 105 AAFAQGLYVGYFNSVIT-TIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-----HRPRWIGIGLVLMGLGSLL 178 (735)
T ss_pred HHHHHHhhhhhhhhhhh-hhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-----CccceeeechhHHHHHHHH
Confidence 33788887766666664 56789999999999998888888765 55677777763 5556777888888888887
Q ss_pred HHhcc------------------ch--------------------------------HHHHHHHHHHHHHhHHHHHHHHH
Q 041017 135 LSMHE------------------KL--------------------------------HLVFAVSALTASSAGIAIADVTI 164 (499)
Q Consensus 135 ~~~~~------------------~~--------------------------------~~~~~~~~~~l~~~g~~~~~~~~ 164 (499)
+++.+ +. .+.+++..-++.|+|.....+..
T Consensus 179 ~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlG 258 (735)
T KOG3626|consen 179 FALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLG 258 (735)
T ss_pred HhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCC
Confidence 76531 00 11233455577888887777777
Q ss_pred HHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc---c----------ChhH------HHHHHHHHHHHHH
Q 041017 165 DACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL---I----------GPKG------VFGLMTIPAGLLI 225 (499)
Q Consensus 165 ~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~---~----------gw~~------~f~~~a~~~~~~~ 225 (499)
.+++=|..+ +++.....|+.+....+|+++|-++++++... + +.|| -|++.+.+.++..
T Consensus 259 isYiDDnvk--~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 259 ISYIDDNVK--KKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred Ccccccccc--ccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 777766664 35677888999999999999999999887542 1 2233 2445555544444
Q ss_pred HHHhcccCCCCCCcc----h-------h--------hhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccce
Q 041017 226 LVGILLNEPQVPDFN----Y-------K--------QVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLF 286 (499)
Q Consensus 226 ~~~~~~~e~~~~~~~----~-------~--------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 286 (499)
+..+++|++.+..++ + + +..+++++-.+.++++++||.+...++...+..... ..+.
T Consensus 337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~----~G~~ 412 (735)
T KOG3626|consen 337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAI----TGYI 412 (735)
T ss_pred HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----hhHH
Confidence 444555544322110 0 0 001133455566788899998765554444322211 1112
Q ss_pred eEEe-cCCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHHHhhhhh--hhhh--h----
Q 041017 287 YWYT-DSKAGPSFSQETVGFVLS-VGPVGSILAAILYQNSLKDYP--FQDVLFWAQLLSGLSGMLDL--LLVL--R---- 354 (499)
Q Consensus 287 ~~~~-~~~~~~g~s~~~~g~~~~-~~~i~~i~g~~l~~~~~~~~~--~r~~l~~~~~~~~~~~l~~~--~l~~--~---- 354 (499)
.|.. +.+..+|.+++.+..+.. +...+..+|.++.|.+.+|+. .|....+..+...+..+..+ ++.. .
T Consensus 413 tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~a 492 (735)
T KOG3626|consen 413 TFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVA 492 (735)
T ss_pred HhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCccc
Confidence 2332 234458888888777763 555666677788888888753 44444444433333222111 0000 0
Q ss_pred --------------------------------cc-------c--------------ccC-----------CC--------
Q 041017 355 --------------------------------LN-------L--------------KFG-----------IP-------- 362 (499)
Q Consensus 355 --------------------------------~~-------~--------------~~~-----------~~-------- 362 (499)
++ . ..+ ++
T Consensus 493 G~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~ 572 (735)
T KOG3626|consen 493 GVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGS 572 (735)
T ss_pred ceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCce
Confidence 00 0 000 00
Q ss_pred ----------chhh--HHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh-HHHhHHHHHHHHHHH
Q 041017 363 ----------DFVA--LVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA-GVLSSSWGGGLLLHI 426 (499)
Q Consensus 363 ----------~~~~--~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~ig~~l~g~l~~~ 426 (499)
...+ ++...++..+++....+|...++.+.+|++.|.-+.|+...+.++ |.+-+|++-|+++|.
T Consensus 573 a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 573 AKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred eecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 0111 122334455666666777777777889999999999999998875 888899999999986
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-09 Score=110.03 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=94.1
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcch-HHHHHhHHHHHHHHHHHhc--cchH
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRP-YFILAGCLGVFSMLLLSMH--EKLH 142 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~-~ll~~~~~~~~~~~~~~~~--~~~~ 142 (499)
.....|.|++++.|.+..+.+....+..++..+ .++.|+++||++ .+||. ..+....+..++....... ++..
T Consensus 272 ~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~---~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 348 (452)
T PRK11273 272 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---RGNRGATGVFFMTLVTIATIVYWLNPAGNPT 348 (452)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCcchHHHHHHHHHHHHHHHHHHhcccChH
Confidence 345667788888899999999887777777765 889999999972 23332 2222222223332222222 2222
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHH-HHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 143 LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGAL-IGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 143 ~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~-lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
. .....++.+.+.........++..|..+ +++||+.+|+.+....+|.. ++|.+.|.+.+++||+..|++.++..
T Consensus 349 ~--~~~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~ 424 (452)
T PRK11273 349 V--DMACMIVIGFLIYGPVMLIGLHALELAP--KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 424 (452)
T ss_pred H--HHHHHHHHHHHHHhHHHHHHHHHHHHcC--hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHH
Confidence 1 1122233333222111222334456653 36899999999888778765 57999999999999999998877665
Q ss_pred HHHHH
Q 041017 222 GLLIL 226 (499)
Q Consensus 222 ~~~~~ 226 (499)
++.++
T Consensus 425 ~~~~~ 429 (452)
T PRK11273 425 ILAVI 429 (452)
T ss_pred HHHHH
Confidence 55433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=106.31 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=97.6
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh---ccchHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM---HEKLHLV 144 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~---~~~~~~~ 144 (499)
...+.|+++++|.+.+.......+..+...+ .|+.|+++||+ +||+.++.+.++..++...+.. ..+...
T Consensus 271 ~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 344 (438)
T PRK09952 271 AFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-----GRRRVYITGALIGTLSAFPFFMALEAQSIFW- 344 (438)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHHcCChHH-
Confidence 3455677778899887655444334333333 78899999997 4555666665554443332222 112221
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHH-HHHHHHHHHHHHHhHhhccc--ChhHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSL-CSAIGALIGYSISGIFVHLI--GPKGVFGLMTIPA 221 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~-~~~~G~~lg~~l~g~l~~~~--gw~~~f~~~a~~~ 221 (499)
..+...++.+++.+.......+++.|..+. +.|+...++.+. +..+|+.++|.+.+++.+.. +|+..+...++..
T Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~--~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 422 (438)
T PRK09952 345 IVFFSIMLANIAHDMVVCVQQPMFTEMFGA--SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 122233444555555555667888898753 578777777544 45589999999999998743 4887777666665
Q ss_pred HHHHHHHhcccCCC
Q 041017 222 GLLILVGILLNEPQ 235 (499)
Q Consensus 222 ~~~~~~~~~~~e~~ 235 (499)
++..+..+.+||++
T Consensus 423 ~i~~v~~~~~~~~~ 436 (438)
T PRK09952 423 LISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHccccc
Confidence 55555555567643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=109.50 Aligned_cols=150 Identities=10% Similarity=0.101 Sum_probs=104.5
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHH
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVF 145 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 145 (499)
...+.+.|+++++|+|+.+.+.+.+.+.++..+ .++.|.++||+ +||+.+.....+..+........++....
T Consensus 224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 297 (394)
T PRK03699 224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-----DLQRILTVLAGLALVLMYLFVNTDDPSHL- 297 (394)
T ss_pred HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-----chhhHHHHHHHHHHHHHHHHHHcCCchHH-
Confidence 345667788888999999999998888777766 77899999997 44555555555555555555555555432
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLI 225 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~ 225 (499)
....++.+++.+...+...+...|..+ +++++..+.......+|..++|.+.|++.+..|++..++..++..++..
T Consensus 298 -~~~~~~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 298 -LYAILGLGFFSSAIYTTIITLGSQQTK---VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF 373 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHcc---CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence 223344555554444444445555442 3456677888888899999999999999999999999988777665553
Q ss_pred H
Q 041017 226 L 226 (499)
Q Consensus 226 ~ 226 (499)
+
T Consensus 374 ~ 374 (394)
T PRK03699 374 V 374 (394)
T ss_pred H
Confidence 3
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-09 Score=107.45 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=115.9
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAV 147 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (499)
...+.+.++.+|.++.+.|++.+...++..+ .++.|+++||. ++++.+..+.....++.+.+++.++... ..
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 316 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-----RPGLLMLLSTLGSFLAVGLFGLMPMWIL--AV 316 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-----CcchHHHHHHHHHHHHHHHHHccchHHH--HH
Confidence 3455677766999999999998888887766 67789999973 4555666666666666666666666542 23
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH-HH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL-IL 226 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~-~~ 226 (499)
...++.+++.+...+...+++.|..+ ++.||+.+++.+....+|..+|+.+.|.+.+.+|++..+++.++...+. .+
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 394 (417)
T PRK10489 317 LCLALFGYLSAISSLLQYTLLQTQTP--DEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVL 394 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 34455667766666666677777663 3579999999999999999999999999999999988888777665554 44
Q ss_pred HHhcccCCCC
Q 041017 227 VGILLNEPQV 236 (499)
Q Consensus 227 ~~~~~~e~~~ 236 (499)
....+||.++
T Consensus 395 ~~~~~~~~~~ 404 (417)
T PRK10489 395 LLLVLGELRR 404 (417)
T ss_pred HHHhcccccc
Confidence 5556676544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=107.16 Aligned_cols=150 Identities=18% Similarity=0.166 Sum_probs=97.8
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHH---HHHHHh----
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFS---MLLLSM---- 137 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~---~~~~~~---- 137 (499)
......+.++++++|.++.+.++..+...+...+ .++.|+++||+ + |||+.+........++ .....+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (399)
T TIGR00893 233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL---L-RRGKSLVFARKTAIIAGLVLSLLMFATNY 308 (399)
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---h-hcccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566778888999999999988887777665 88899999997 2 3332121111111111 111111
Q ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhHHHHH
Q 041017 138 HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKGVFGL 216 (499)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~~ 216 (499)
.++... .+....+..++.+ ..+...+++.|..+ +++|++.+++.+....+|..++|.+.|.+.+..| |+..|++
T Consensus 309 ~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~ 383 (399)
T TIGR00893 309 VNIPYA--ALALVALGFFGLG-AGAIGWALISDNAP--GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMV 383 (399)
T ss_pred chhHHH--HHHHHHHHHhchh-hhhHHHHHHHhhcC--hhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHH
Confidence 112221 1222222333333 45566778888774 4689999999999999999999999999999888 9999888
Q ss_pred HHHHHHHH
Q 041017 217 MTIPAGLL 224 (499)
Q Consensus 217 ~a~~~~~~ 224 (499)
.++..++.
T Consensus 384 ~~~~~~~~ 391 (399)
T TIGR00893 384 VAALALIG 391 (399)
T ss_pred HHHHHHHH
Confidence 77665554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.5e-09 Score=106.08 Aligned_cols=146 Identities=17% Similarity=0.177 Sum_probs=109.5
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVS 148 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (499)
..+++++ ++|.++.++|.+.+...+...+ .++.|.+.||+ ++|+.+.++.+...+....+++.++.+.. +.
T Consensus 227 ~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~ 298 (382)
T TIGR00902 227 FSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-----SARDLLLISAIACVGRWAIIGAIEAFPLI--FL 298 (382)
T ss_pred HHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-----CHHHHHHHHHHHHHHHHHHHHhHhhHHHH--HH
Confidence 4456776 5899999999988877776665 67789999986 56777888888888888888888877642 33
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHH-HHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHH
Q 041017 149 ALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCS-LCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILV 227 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~-~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~ 227 (499)
..++.++..+...+....++.+. ++++|++.+++++ ....+|..+|+.++|++.+++|+ ..|++.++..++..+.
T Consensus 299 ~q~l~g~~~~~~~~~~~~~i~~~---~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 299 LQILHCGTFAVCHLAAMRYIAAQ---PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 45777888877776655555543 2356788899876 46789999999999999999986 6677777666544333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-09 Score=109.44 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=96.3
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHH-HhHHHHHHHHHHHhcc--chHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFIL-AGCLGVFSMLLLSMHE--KLHLV 144 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~-~~~~~~~~~~~~~~~~--~~~~~ 144 (499)
...+.|+++..|.++.+.++..+...+...+ .++.|+++||++ .+||..... ......++.+.+...+ +...
T Consensus 272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 347 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---KGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV- 347 (438)
T ss_pred HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccHHHHHHHHHHHHHHHHHHhcCCCchHH-
Confidence 3556788877899999999988877776665 888999999972 233332211 1111111222222221 2221
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHH-HHHHHHHHhHhhcccChhHHHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIG-ALIGYSISGIFVHLIGPKGVFGLMTIPAGL 223 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G-~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~ 223 (499)
.....++.+++.............|..+ +++|+..+|+.+....+| ..++|.+.|.+.++.||...|++.+...++
T Consensus 348 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~ 424 (438)
T TIGR00712 348 -DMICMIVIGFLIYGPVMLIGLHALELAP--KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 424 (438)
T ss_pred -HHHHHHHHHHHHccHHHHHHHHHHHhcC--hhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHH
Confidence 1112222233221111111234456553 368999999998877776 578999999999999999998876665554
Q ss_pred H-HHHHhcccCCCC
Q 041017 224 L-ILVGILLNEPQV 236 (499)
Q Consensus 224 ~-~~~~~~~~e~~~ 236 (499)
. +...+.+||+++
T Consensus 425 ~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 425 AVILLIVVMIGEKR 438 (438)
T ss_pred HHHHHHHHHhhccC
Confidence 4 445566777653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-09 Score=104.40 Aligned_cols=154 Identities=23% Similarity=0.295 Sum_probs=122.5
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcch-HHHHHhHHHHHHHHHHHhccchHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRP-YFILAGCLGVFSMLLLSMHEKLHL 143 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~-~ll~~~~~~~~~~~~~~~~~~~~~ 143 (499)
......+.+.++.+|.++.+.+...+...++..+ .++.|+++||+ +||+ .+..+..+..++...+...++.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (352)
T cd06174 193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-----GRRRLLLLIGLLLAALGLLLLALAPSLAL 267 (352)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3445555677766799999999998888888776 88899999997 5555 777888888888877777776443
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHH
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGL 223 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~ 223 (499)
.....++.+++.+...+...+++.|..+ +++|++.++..+...++|..+++.+.+.+.+..+|+..+.+.++..++
T Consensus 268 --~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i 343 (352)
T cd06174 268 --LLVALLLLGFGLGFAFPALLTLASELAP--PEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343 (352)
T ss_pred --HHHHHHHHHHHHhccchhHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence 2345566778887777788888888874 378999999999999999999999999999999999999988887766
Q ss_pred HHHHH
Q 041017 224 LILVG 228 (499)
Q Consensus 224 ~~~~~ 228 (499)
..+..
T Consensus 344 ~~i~~ 348 (352)
T cd06174 344 AALLL 348 (352)
T ss_pred HHHHh
Confidence 54443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.7e-09 Score=105.26 Aligned_cols=160 Identities=13% Similarity=0.011 Sum_probs=106.1
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
....++++++ +|.++.+.|...++..++..+ .++.|+++||+ +||+.+..+..+..++...+...++.....
T Consensus 225 ~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 297 (393)
T PRK09705 225 IAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-----DRRKLLMLALVLQLVGFCGFIWLPLQLPVL- 297 (393)
T ss_pred HHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHccchHHHH-
Confidence 3455667764 799999999998888888776 78899999996 455666666666666555444333221111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhHHHHHHHHHHHHH-
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKGVFGLMTIPAGLL- 224 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~~~a~~~~~~- 224 (499)
. ..+.+++.+...+...+...+..+ ++++|++..++.+....++..++|.+.|++.+..| |+..|.+.++..++.
T Consensus 298 ~--~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (393)
T PRK09705 298 W--AMVCGLGLGGAFPLCLLLALDHSV-QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLM 374 (393)
T ss_pred H--HHHHHHhccchHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 1 123344444443434444455442 23578999999999999999999999999999876 677777766655544
Q ss_pred HHHHhcccCCCCC
Q 041017 225 ILVGILLNEPQVP 237 (499)
Q Consensus 225 ~~~~~~~~e~~~~ 237 (499)
.+...+.||++++
T Consensus 375 ~~~~~~~~~~~~~ 387 (393)
T PRK09705 375 IITLRFAPARFPQ 387 (393)
T ss_pred HHHHHhccccccc
Confidence 3345566776544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-08 Score=101.86 Aligned_cols=146 Identities=14% Similarity=0.032 Sum_probs=99.8
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHH-HHhccchHHHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLL-LSMHEKLHLVFAV 147 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~ 147 (499)
..++++++++|.|+.+.+++.+...++..+ +++.|+++||+ +||.. +.+..+..++... ....++.+. ..
T Consensus 227 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~-~~~~~~~~~~~~~l~~~~~~~~~--~~ 298 (390)
T PRK03545 227 YIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-----PSGFL-LIAIALLLVCLLLLLPAANSEWH--LS 298 (390)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-----chhHH-HHHHHHHHHHHHHHHHHhchHHH--HH
Confidence 344567777899999999988877777665 78899999996 44443 3343333333332 233444432 22
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL 226 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~ 226 (499)
...++.+++.....+...+.+.+.. |++|++++++.+....+|..+|+.++|.+.+++|++..|++.++..++.++
T Consensus 299 ~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 299 VLSIFWGIAIMCIGLAMQVKVLKLA---PDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV 374 (390)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence 3344555555444444445555543 467889999999999999999999999999999999999988777665533
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.7e-09 Score=104.85 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=89.0
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHH-HHhHHHHHHHHHHHhccchHHHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFI-LAGCLGVFSMLLLSMHEKLHLVF 145 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll-~~~~~~~~~~~~~~~~~~~~~~~ 145 (499)
....+.++++++|.++.+.+...+...++..+ .++.|+++||.. .|||..+. .......++.......+......
T Consensus 236 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (379)
T TIGR00881 236 LDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF---NGRRGPLAVFFMALIIVSLLVYWLNPAANPLM 312 (379)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc---CCcchHHHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 44556677778899999999988888777665 788999999751 23332222 22222222222222211111111
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVF 214 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f 214 (499)
.....++.++...........+..|..+ +++|++..++.+....+|..++|.+.|.+.++.||++.|
T Consensus 313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 313 DLICLFALGFLVYGPQMLIGVIASELAP--KKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcC--cchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 1222233333332233334456677763 468999999999999999999999999999999998754
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=102.27 Aligned_cols=149 Identities=16% Similarity=0.044 Sum_probs=101.8
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAV 147 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (499)
...+.+++ +.|.++.+.+...+...++..+ .++.|+++||+ +||+.+..+.....++.....+.++.... .
T Consensus 241 ~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 312 (406)
T PRK11551 241 NWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-----RPRRVVLLIYAGILASLAALAAAPSFAGM--L 312 (406)
T ss_pred HHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence 34556665 5799999999988888877766 78899999996 55666665555555555555555554432 2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc-ChhHHHHHHHHHHHHHHH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI-GPKGVFGLMTIPAGLLIL 226 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~-gw~~~f~~~a~~~~~~~~ 226 (499)
...++.+++.+...+...++..|..+ +++|++..++.+....+|..+||.++|.+.++. +|+..++......++..+
T Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK11551 313 LAGFAAGLFVVGGQSVLYALAPLFYP--TQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAAL 390 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcc--hhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHH
Confidence 23344555554455556677777764 468999999999999999999999999998865 455555554444333333
Q ss_pred H
Q 041017 227 V 227 (499)
Q Consensus 227 ~ 227 (499)
.
T Consensus 391 ~ 391 (406)
T PRK11551 391 A 391 (406)
T ss_pred H
Confidence 3
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-09 Score=109.21 Aligned_cols=150 Identities=17% Similarity=0.070 Sum_probs=104.9
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAV 147 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (499)
...++|.+ +.|.++.+.+.+.++..++..+ +|+.|.++||.+. +.+|+..+..+.+...++.+.+...++.+. ++
T Consensus 262 ~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~ 337 (455)
T TIGR00892 262 IFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWI-RPHVQYLFSFALLFNGLTHLLCALAGDYTG--LV 337 (455)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHHHHHHHHHhchHHH--HH
Confidence 34455665 5799999999998888777665 8999999997421 112223333333433444444555566543 23
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc-ChhHHHHHHHHHHHHH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI-GPKGVFGLMTIPAGLL 224 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~-gw~~~f~~~a~~~~~~ 224 (499)
...++.+++.+...+...+++.|..+ ++++++.+++.+...++|..+||.++|.+.+.. +|++.|++.++..++.
T Consensus 338 i~~~~~G~~~g~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 338 IYCIFFGLSFGSVGALLFEVLMDLVG--AQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhh--HHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence 34556677776666667778788764 467899999999999999999999999999877 5999998877655443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=102.90 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=107.3
Q ss_pred HHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchh
Q 041017 253 KAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQD 332 (499)
Q Consensus 253 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~ 332 (499)
+..++++.++++..+....++..+......+- .+|.... .+-.+...|......-.+.++.-+...++.+|.|.-+
T Consensus 362 a~~~~~~~s~~~llff~~av~mG~g~~lv~tF-LfWHled---~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~ 437 (618)
T KOG3762|consen 362 ADVGKVFASPHILLFFFVAVVMGAGVGLVFTF-LFWHLED---LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN 437 (618)
T ss_pred HHHHHHhcCCCEEehhHHHHHHHHHHHHHHHH-HHHHHhh---cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc
Confidence 44456777877544333333222211111111 1343332 4445556676666777888888899999999999888
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHH-hh
Q 041017 333 VLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSID-NA 411 (499)
Q Consensus 333 ~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~-~l 411 (499)
++.++..+..+=+ +.+...+| .|.++....+.+...+..|....++++..+||+.+.++.|+..... .+
T Consensus 438 v~~lgLa~~~~Rf---~~~S~L~n-------~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~Gl 507 (618)
T KOG3762|consen 438 VMYLGLACNVGRF---LYYSYLQN-------PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGL 507 (618)
T ss_pred eeeehhhHHHHHH---HHHHHhcC-------chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhccc
Confidence 8776655444321 11222233 3444555677777888888888899999999999999999988875 57
Q ss_pred HHHhHHHHHHHHHHHhC
Q 041017 412 GVLSSSWGGGLLLHILK 428 (499)
Q Consensus 412 g~~ig~~l~g~l~~~~g 428 (499)
|..+|+++||.+...+|
T Consensus 508 G~g~GslIGG~~v~~fg 524 (618)
T KOG3762|consen 508 GKGLGSLIGGFVVERFG 524 (618)
T ss_pred Ccchhhhhhhhhheeeh
Confidence 99999999999998876
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-09 Score=108.96 Aligned_cols=159 Identities=15% Similarity=0.060 Sum_probs=102.9
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh---c--cc--
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM---H--EK-- 140 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~---~--~~-- 140 (499)
...+.+ .+++|.+..+.+.......+...+ .++.|+++||+ +||+.+..+..+.+++.+.+++ . ++
T Consensus 305 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
T TIGR00879 305 YYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-----GRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378 (481)
T ss_pred HHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 344444 456899998888777776666555 78899999997 4566666666666666555542 1 11
Q ss_pred ---hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHH
Q 041017 141 ---LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLM 217 (499)
Q Consensus 141 ---~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~ 217 (499)
..........+..+++.+. .+...+++.|..+ +++|++.+++.+...++|..+++.+.+.+.++.+|++.|++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~ 455 (481)
T TIGR00879 379 KSSGNVAIVFILLFIAFFAMGW-GPVPWVIVSEIFP--LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFF 455 (481)
T ss_pred cchhHHHHHHHHHHHHHHHccc-cCeehhhhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhH
Confidence 1111111112222222222 2333455567653 357999999999999999999999999999988999999888
Q ss_pred HHHHHHHHH-HHhcccCCCC
Q 041017 218 TIPAGLLIL-VGILLNEPQV 236 (499)
Q Consensus 218 a~~~~~~~~-~~~~~~e~~~ 236 (499)
++..++..+ ..++.||+++
T Consensus 456 ~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 456 GGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred HHHHHHHHHHHheecccCCC
Confidence 777666544 3455676543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-08 Score=101.70 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=105.6
Q ss_pred HHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHH
Q 041017 71 TQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSA 149 (499)
Q Consensus 71 ~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (499)
.+.+++ +.|.+ +.+...+...++..+ .++.|+++||+ +||+.+..+..+..++...+.+.++.+. ....
T Consensus 239 ~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 308 (399)
T PRK05122 239 ITLYYA-ARGWD--GAALALTLFGVAFVGARLLFGNLINRL-----GGLRVAIVSLLVEILGLLLLWLAPSPWM--ALIG 308 (399)
T ss_pred HHHHHH-Hcccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhccHHH--HHHH
Confidence 344554 34553 445555566666665 78899999996 4566677777777777666666666543 2334
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHHh
Q 041017 150 LTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGI 229 (499)
Q Consensus 150 ~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~~ 229 (499)
.++.+++.+...+...+...|.. ++++|++..++.+....+|..+++++.|.+.+..||+..|++.++..++..+..+
T Consensus 309 ~~l~G~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 309 AALTGFGFSLVFPALGVEAVKRV--PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 56667777665555555555654 3468999999999999999999999999999999999999987776666544444
Q ss_pred cccCCC
Q 041017 230 LLNEPQ 235 (499)
Q Consensus 230 ~~~e~~ 235 (499)
..++++
T Consensus 387 ~~~~~~ 392 (399)
T PRK05122 387 LLYRRA 392 (399)
T ss_pred Hhcccc
Confidence 444433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-06 Score=86.45 Aligned_cols=234 Identities=13% Similarity=0.091 Sum_probs=128.3
Q ss_pred hccCCChhHHHHHHHhhhchhh-hhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Q 041017 77 DVQKVQPSEAQVYAGITSLPWI-VKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSA 155 (499)
Q Consensus 77 ~~~g~s~~~~g~~~~~~~l~~~-~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 155 (499)
+++|++..|++.+....+.... ++|+.|.++||+ +||+.-+...+++.++++ +-..+++. .+++.|++.|+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-----Grk~~cl~~cily~~scl-~k~~~~~~--~L~~GRvlgGi 133 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-----GRKKACLLFCILYSLSCL-TKHSSNYP--VLLLGRVLGGI 133 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHH-HHhccccH--HHHHHHHHHHH
Confidence 4799999999988877766655 499999999997 455554555556665554 33445655 35678899999
Q ss_pred HHHHHHHHHHHHH-HhhccCC-CC-cccchHHHHH-HHHHHHHHHHHHHHhHhhcccC--hhHHHHHHHHHHHHHHH-HH
Q 041017 156 GIAIADVTIDACV-AQNSICH-PS-LASDMQSLCS-LCSAIGALIGYSISGIFVHLIG--PKGVFGLMTIPAGLLIL-VG 228 (499)
Q Consensus 156 g~~~~~~~~~alv-~e~~~~~-~~-~rg~~~~~~~-~~~~~G~~lg~~l~g~l~~~~g--w~~~f~~~a~~~~~~~~-~~ 228 (499)
+.+.-....+++. .|.-++. |+ ..+...+... ..+++-.+++..++-++.+..+ ...+|....+...+..+ +.
T Consensus 134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence 9888887788866 4543321 21 1122122111 1222333444444555555443 45677664444433322 33
Q ss_pred hcccCCCCCCcchhhhhHHHHHHHHH-HHHHccCcchhhHHHHHhhhhhccccccccceeEEecCC-CCCCCChhHHHHH
Q 041017 229 ILLNEPQVPDFNYKQVNLKFLDAGKA-MWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSK-AGPSFSQETVGFV 306 (499)
Q Consensus 229 ~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~ 306 (499)
..-+|.+....+.+ +.++..++ ...+++||+++..-+...+.-.. +..-.+.|.+..+ ++-+ .-.|++
T Consensus 214 ~~W~ENyg~~~~~~----~~~~~~~~a~~~i~~d~ril~LG~~qslFE~s---my~FVflWtPaL~~~~~~---~P~GlI 283 (354)
T PF05631_consen 214 KTWPENYGDTSSSS----SLSGSFREAWRAILSDPRILLLGLIQSLFEGS---MYLFVFLWTPALDPDDEE---LPLGLI 283 (354)
T ss_pred hcccccCCCccccc----chHHHHHHHHHHHHcCchhHHHHHHHHHHHHH---HHHheeeeeceecCCCCC---CCchHH
Confidence 34456544322111 11223333 33455678876665544432211 0111234544322 1111 224788
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 041017 307 LSVGPVGSILAAILYQNSLKDY 328 (499)
Q Consensus 307 ~~~~~i~~i~g~~l~~~~~~~~ 328 (499)
.....++.++|+.+..++..+.
T Consensus 284 FssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 284 FSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 7777888999999987766543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=103.75 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=94.9
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHH-HHHhccchHHHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSML-LLSMHEKLHLVFAV 147 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~ 147 (499)
..+.++++++|.++.+.+++.+...++..+ .++.|+++||+ +||+.+..+.....+... .....++... ..
T Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 332 (405)
T TIGR00891 260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-----GRRKAYVCSLLAGQLLIIPVFAIGANVAV--LG 332 (405)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchhhhHHHHHHHHHHHHHHHHhCCchHH--HH
Confidence 445677778999999999998888887766 78899999997 455555555554422222 2223333322 12
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhHHHHHH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKGVFGLM 217 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~~~ 217 (499)
...++.++..........+++.|..+ +++|++.+|+.+....+|..++|+++|.+.++.| |+..+...
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 333 LGLFFQQMLVQGIWGILPKHLGEYFP--TDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHHHHHHccchhhHHHHHhhhCC--cchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 22233333333333445677778764 4689999999999999999999999999999888 87766553
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-10 Score=123.07 Aligned_cols=357 Identities=11% Similarity=0.056 Sum_probs=2.7
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+.|+..++.....++ .++++++++.++.|++.+.+-++..+ ..+..++.+|- +|-+|+-.+.++.+++.++++
T Consensus 13 ~~q~~~~g~~~~~lt-tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-----hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 13 LFQMMVSGYVNSSLT-TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-----HRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCcceeeecHHHHHHHHHHHh
Confidence 566655556666665 46789999999999999999998775 67788888862 566678788888888887766
Q ss_pred hcc----ch--------------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041017 137 MHE----KL--------------------------------------------HLVFAVSALTASSAGIAIADVTIDACV 168 (499)
Q Consensus 137 ~~~----~~--------------------------------------------~~~~~~~~~~l~~~g~~~~~~~~~alv 168 (499)
+-+ .+ ....+++.-++.|+|.+...+...+++
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 421 00 011233455778999888888888888
Q ss_pred HhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc----------------ChhH--HHH----HHHHHHHHHHH
Q 041017 169 AQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI----------------GPKG--VFG----LMTIPAGLLIL 226 (499)
Q Consensus 169 ~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~----------------gw~~--~f~----~~a~~~~~~~~ 226 (499)
=|..+ +++.+...|+.+....+|+++|-.+++.....+ +.|| +.| +.++..++..+
T Consensus 167 DDnv~--~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai 244 (539)
T PF03137_consen 167 DDNVS--KKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI 244 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--cccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 77763 456777789999999999999999988765421 1222 333 33333333322
Q ss_pred HHhcccCCCCCC----c-----chh--hh-------h-------HHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccc
Q 041017 227 VGILLNEPQVPD----F-----NYK--QV-------N-------LKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNI 281 (499)
Q Consensus 227 ~~~~~~e~~~~~----~-----~~~--~~-------~-------~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 281 (499)
-.+..|++.+.. + +.+ +. . ...++-.+.++++++||.+....+.........
T Consensus 245 pl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~--- 321 (539)
T PF03137_consen 245 PLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIV--- 321 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHH---
Confidence 223333321111 0 000 00 0 011222344567777887654444333322211
Q ss_pred cccceeEE-ecCCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHHHhhh--hhhhhhhc
Q 041017 282 HEGLFYWY-TDSKAGPSFSQETVGFVLS-VGPVGSILAAILYQNSLKDYP--FQDVLFWAQLLSGLSGML--DLLLVLRL 355 (499)
Q Consensus 282 ~~~~~~~~-~~~~~~~g~s~~~~g~~~~-~~~i~~i~g~~l~~~~~~~~~--~r~~l~~~~~~~~~~~l~--~~~l~~~~ 355 (499)
.+ ...|. .+.+..++.+++..+.+.. +...+..+|.++.|.+.||++ .|+...++.+...+..+. ..++..-.
T Consensus 322 ~G-~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~ 400 (539)
T PF03137_consen 322 SG-FATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCP 400 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCC
Confidence 11 12233 3335558888877776653 344455666666666666653 344444433333332211 11111000
Q ss_pred -------ccc-----------------------------cC---CC-c-hh-hHHHHHHHHHHHHHhhhhHHHHHHHhhC
Q 041017 356 -------NLK-----------------------------FG---IP-D-FV-ALVIDEGISRMVGQLKWMPLLVLSSRLC 393 (499)
Q Consensus 356 -------~~~-----------------------------~~---~~-~-~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 393 (499)
+.. .| .. . .+ ..+....+..+......+|......+..
T Consensus 401 ~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V 480 (539)
T PF03137_consen 401 NPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCV 480 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccC
Confidence 000 00 00 0 01 1112222334555666677777777899
Q ss_pred CCChhHHHHHHHHHHHhh-HHHhHHHHHHHHHHH
Q 041017 394 PSGIEGTFFALLMSIDNA-GVLSSSWGGGLLLHI 426 (499)
Q Consensus 394 p~~~~g~~~gl~~~~~~l-g~~ig~~l~g~l~~~ 426 (499)
|+++|+.+.|+...+.++ |.+-||++.|.++|.
T Consensus 481 ~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 481 PPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ----------------------------------
T ss_pred ChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 999999999999988876 777899999999885
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-08 Score=100.76 Aligned_cols=124 Identities=16% Similarity=0.153 Sum_probs=94.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
++|.|+.+.+++.....++..++.++.|++.||+++|+.+..+.++..+..+.. .. .++.........+.
T Consensus 34 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~l~ 103 (385)
T TIGR00710 34 DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL-AL---------SNNIETLLVLRFVQ 103 (385)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH-HH---------HccHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999888776666543321 11 11222222223344
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
++..+....+..+++.|.+|+++|++.+|+.+...++|..++|.+++.+.+..|
T Consensus 104 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS 157 (385)
T ss_pred HcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444444455566888999999999999999999999999999999999887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=100.41 Aligned_cols=132 Identities=13% Similarity=0.077 Sum_probs=100.6
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccc-hHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEK-LHLVFA 146 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~-~~~~~~ 146 (499)
...+++.++.+|.++.+.+.+.+...++..+ .++.|.++||. +||+.+..+..+..++.....+.++ .+ ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 304 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-----KRMALMTGAIFVIGLAILVVGLTPPNFP--LF 304 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chhHHHHHHHHHHHHHHHHHHhhchhHH--HH
Confidence 4556666666899999999988888777665 78899999985 5666666666666666666666554 33 23
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG 209 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g 209 (499)
....++.+++.+...+...+++.|..+ +++|++.+++.+....+|..+++.++|.+.+.+|
T Consensus 305 ~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 305 LVLWFAIGVGYGPINVPQGTLLQRRVP--AELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566778877777777888888774 4689999999999999999999999999988654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-08 Score=97.37 Aligned_cols=179 Identities=18% Similarity=0.129 Sum_probs=121.0
Q ss_pred CccccccccHHHHHHHHhhhccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhH
Q 041017 24 KGCCGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPL 102 (499)
Q Consensus 24 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl 102 (499)
++..+.++||+-|....... +.+ . | ....+++.- |+++|..|+|.+.++++...+.++..+ ..+
T Consensus 202 ~~~~~~l~~p~v~~~l~~t~----------l~~--~-g-~F~~ftYi~-P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~ 266 (394)
T COG2814 202 RTLLRLLRRPGVLLGLLATF----------LFM--T-G-HFALYTYIR-PFLESVAGFSVSAVSLVLLAFGIAGFIGNLL 266 (394)
T ss_pred hHHHHHhcCchHHHHHHHHH----------HHH--c-c-hhhhHHhHH-HHHHHccCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 34567788888774432221 111 1 1 112344444 578889999999999999999888877 778
Q ss_pred HhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccch
Q 041017 103 WGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDM 182 (499)
Q Consensus 103 ~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~ 182 (499)
.|.++|| +.|+.+.....+.++....+.+.++.... .+...++.++.... ....+..+..+..|+.++..
T Consensus 267 gGrl~dr------~~~~~l~~~~~l~a~~~l~l~~~~~~~~~-~~~~~~~wg~a~~~---~~~~~~~~~a~~~p~~~~~a 336 (394)
T COG2814 267 GGRLADR------GPRRALIAALLLLALALLALTFTGASPAL-ALALLFLWGFAFSP---ALQGLQTRLARLAPDAADLA 336 (394)
T ss_pred Hhhhccc------cchhHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhhh---hhhHHHHHhcccCCCchHHH
Confidence 9999998 34445555555556565555555443322 22333333333332 23455666665456788899
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHH
Q 041017 183 QSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILV 227 (499)
Q Consensus 183 ~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~ 227 (499)
.++.....++|..+|..++|.+++++|++...+..++..++....
T Consensus 337 ~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~ 381 (394)
T COG2814 337 GSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLL 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888877665433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-08 Score=101.69 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=85.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|+|+.+.|+..+...++.+++....|++.||+++|+.+..+.+..++..+. ..+. ++.+..+....+.+
T Consensus 38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~g 107 (395)
T PRK10054 38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA-IPLV---------NNVTLVVLFFALIN 107 (395)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH-HHHH---------hHHHHHHHHHHHHH
Confidence 7999999999998888888999999999999999999888777665554321 1111 11111111111222
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
...........++..|..|++++++.+|+.+...++|..++|.+++.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222245678899999999999999999999999999999998874
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.7e-06 Score=86.07 Aligned_cols=232 Identities=13% Similarity=0.117 Sum_probs=125.7
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHH--------HHhcccC---CCCCCc--ch
Q 041017 175 HPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL--------VGILLNE---PQVPDF--NY 241 (499)
Q Consensus 175 ~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~--------~~~~~~e---~~~~~~--~~ 241 (499)
+++...+.++.+.-..-+-.+++|++.|.+.+..|.+....+.+...++.++ ++-..|+ +++..+ ..
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~ 222 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS 222 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc
Confidence 4456677888888888889999999999999988888766555554443311 1122332 111111 00
Q ss_pred hhh------------hHHHHHHHH----HHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHH
Q 041017 242 KQV------------NLKFLDAGK----AMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGF 305 (499)
Q Consensus 242 ~~~------------~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 305 (499)
++. .++.++..+ .+...+++|.+.-...+.+++.- -.+..+.+..|... .|+++..+|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~----~G~s~~~igi 297 (432)
T PF06963_consen 223 SDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKS----QGYSPSVIGI 297 (432)
T ss_pred ccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHH----CCCCHHHHHH
Confidence 000 001111111 22234455543333333333211 11222222222222 5899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCC-ch--hh-HHHHHHHHHHHHHhh
Q 041017 306 VLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIP-DF--VA-LVIDEGISRMVGQLK 381 (499)
Q Consensus 306 ~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~--~~-~~~~~~l~~~~~~~~ 381 (499)
+-..+.+..+.|.+++.++.+|.|..|.=.++...-..+...... .-|. .+.+ .. .. .+...++.-+. -..
T Consensus 298 ~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~--~~~~--~~~~~~~~s~~~l~~gi~~SR~G-LW~ 372 (432)
T PF06963_consen 298 FRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVV--SFWA--PGSPFSSISAYLLLGGIALSRIG-LWS 372 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH--HHhc--CCCCchhhHHHHHHHHHHHHHHH-HHh
Confidence 999999999999999999999999877666654433332111111 1111 0111 11 11 11111111111 111
Q ss_pred h-hHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhH
Q 041017 382 W-MPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSS 416 (499)
Q Consensus 382 ~-~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig 416 (499)
+ ....-++.|..|+++||+..|.-++..++-..+.
T Consensus 373 fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 373 FDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred hhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 1 1224567788999999999999999999875554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-08 Score=100.48 Aligned_cols=159 Identities=10% Similarity=0.032 Sum_probs=104.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHH
Q 041017 294 AGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGI 373 (499)
Q Consensus 294 ~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 373 (499)
+++|+|+.+.|++.....++..++.+..+++.||+|+|+.+..+.++..+..+.. .+. ++....+..-.+
T Consensus 36 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~-~~~---------~~~~~l~~~r~l 105 (412)
T TIGR02332 36 KDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTAT-MFA---------TGPESLYLLRIL 105 (412)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHh---------cCHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999888777766644321 111 111122222233
Q ss_pred HHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC-cccCCChhHHHHHHHHhHhHHHH
Q 041017 374 SRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV-TRTQFHNLWLAILIRNILRITPL 452 (499)
Q Consensus 374 ~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~-~~~~~~~~~~~~~i~~~~~li~l 452 (499)
.++..+........++.|.+|+++||+..|+++....+|..+++.+++.+.+.-+. +..+++ ..+.+.++..++..
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr---~~f~~~~~~~l~~~ 182 (412)
T TIGR02332 106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ---WLFLLEGFPSVILG 182 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh---HHHHHHHHHHHHHH
Confidence 44444433333346789999999999999999999999999999999988753111 011222 23333333433333
Q ss_pred -HHHhhcCCCCCCC
Q 041017 453 -CVIFLVPRGDPDT 465 (499)
Q Consensus 453 -~~~~~lp~~~~~~ 465 (499)
+..+++||++.+.
T Consensus 183 ~~~~~~~~~~p~~~ 196 (412)
T TIGR02332 183 VMTWFWLDDSPDKA 196 (412)
T ss_pred HHHhhccCCCcccC
Confidence 3334677776543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-08 Score=104.62 Aligned_cols=145 Identities=9% Similarity=0.015 Sum_probs=97.9
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAV 147 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (499)
...+.|+++++|.++.+.+++.+...++..+ .++.|+++||+ +||+.++.+..+..+..+.....++.......
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-----GTRKAYVCSLLISQLLIIPVFAIGGANVWVLG 370 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4566788778999999999999888888776 77899999997 45555666655555444333332222211111
Q ss_pred HHHHHH-HhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 148 SALTAS-SAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 148 ~~~~l~-~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
...++. ..+.+ ......+++.|..+ +++|++.+++.+....+|..+||.++|.+.+.+||+..+...+...
T Consensus 371 ~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 371 LLLFFQQMLGQG-ISGLLPKLIGGYFD--TEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHHHHhcc-cchhhHHHHHhhCC--HHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 122222 22222 23344566677763 3689999999999999999999999999999999998876655433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-08 Score=107.35 Aligned_cols=157 Identities=9% Similarity=0.085 Sum_probs=109.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|++..+.+++.+...++.++|.++.|++.||+|+|+.+.++.++.++..+.. .+. ++....+..-++.+
T Consensus 197 ~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~-afa---------~s~~~llv~R~l~G 266 (742)
T TIGR01299 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFS-SFV---------QGYGFFLFCRLLSG 266 (742)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHH---------hhHHHHHHHHHHHH
Confidence 77888888999888899999999999999999999999988776666543321 111 11122222333445
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCccc-----CCChhHHHHHHHHhHhHH
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRT-----QFHNLWLAILIRNILRIT 450 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~-----~~~~~~~~~~i~~~~~li 450 (499)
+..+.......+++.|.+|++.||+.+++.+.+..+|..+++.++..+...+|+... ...+...++.+.++..++
T Consensus 267 ~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll 346 (742)
T TIGR01299 267 FGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF 346 (742)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHH
Confidence 554544445568899999999999999999999999999999998888776654210 111222344444445555
Q ss_pred HHHHHhhcCCCC
Q 041017 451 PLCVIFLVPRGD 462 (499)
Q Consensus 451 ~l~~~~~lp~~~ 462 (499)
.++..+++||+.
T Consensus 347 ~ll~~~~lPESP 358 (742)
T TIGR01299 347 AIGALTFMPESP 358 (742)
T ss_pred HHHHHHHcCCCH
Confidence 555566888873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-08 Score=99.86 Aligned_cols=138 Identities=9% Similarity=-0.000 Sum_probs=88.1
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAV 147 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (499)
...+.+++ +.|.++.+.+...+...++..+ +++.|+++||+ +||+.+..+.++..+..+.....++.......
T Consensus 252 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (426)
T PRK12307 252 GLLPTYLA-GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-----GLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLG 325 (426)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHccccHHHHH
Confidence 34556666 4699999999888777776665 88999999997 45666666666555554444333222111111
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVF 214 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f 214 (499)
...+..+++..........++.|..+ ++.||+++|+.+....+|..++|.+.|++.++.|+....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~ 390 (426)
T PRK12307 326 ACLFGLMATNVGVGGLVPKFLYDYFP--LEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAAL 390 (426)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHhCc--HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHH
Confidence 11111111111112223455667664 367999999999999999999999999999988876543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8e-08 Score=97.97 Aligned_cols=147 Identities=13% Similarity=0.100 Sum_probs=98.4
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVS 148 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (499)
..+.|++ +.|.++++.+.+.+...+...+ +++.|+++||+ +||+.+..+..+..++..... +.... ..
T Consensus 222 ~lp~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~l~~~~~~~~~~~~~~~--~~~~~---~~ 290 (381)
T PRK03633 222 LMPLYLN-HQGMSDASIGFWMALLVSAGILGQWPIGRLADRF-----GRLLVLRVQVFVVILGSIAML--SQAAM---AP 290 (381)
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-----CcHHHHHHHHHHHHHHHHHHh--hhHHH---HH
Confidence 4555665 4699999999888877777665 77899999996 566667666666555543332 22211 12
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHH
Q 041017 149 ALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVG 228 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~ 228 (499)
..++.+++.....+...+.+.|..+ +++++...+..+...++|..+||.++|++.++.||++.|.+.+...++..+..
T Consensus 291 ~~~l~g~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 291 ALFILGAAGFTLYPVAMAWACEKVE--HHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHhHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 2233444444344555566666553 34556667777788999999999999999999999999988777665544443
Q ss_pred h
Q 041017 229 I 229 (499)
Q Consensus 229 ~ 229 (499)
+
T Consensus 369 ~ 369 (381)
T PRK03633 369 L 369 (381)
T ss_pred H
Confidence 3
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-08 Score=98.13 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=98.3
Q ss_pred HHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHH
Q 041017 71 TQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSA 149 (499)
Q Consensus 71 ~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (499)
.++|++ +.|.++.+.|.+.++..+.... .++.|.+.||+ ++|+.+..+.+...+....+++.++.+.. +..
T Consensus 228 ~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~ 299 (382)
T PRK11128 228 SAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-----SARDLLLLSAICGVVRWGLMGSTTALPWL--IVI 299 (382)
T ss_pred HHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHH
Confidence 345665 5899999999988877666554 77899999986 56667777877777777777777776532 334
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHH-HHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHH
Q 041017 150 LTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCS-LCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGL 223 (499)
Q Consensus 150 ~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~-~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~ 223 (499)
.++.+++.+...+....++.+. +++++++.++..+ ....+|..+||.++|.+.+.+|+ ..|+..++..++
T Consensus 300 ~~l~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 300 QILHCGTFTVCHLAAMRYIAAR---PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC---CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 5556676665555544444442 2345677888776 55678889999999999999887 456655554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=97.32 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=95.0
Q ss_pred HHHHhhhcc---CCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 71 TQYYMKDVQ---KVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 71 ~~~~l~~~~---g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
.+.|+++.+ +.+..+.|...++..+...+ .++.|.+.||+ +||+.++++..+.++...+.+..++.+..
T Consensus 238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-----g~~~~l~~~~~l~~l~~~~~~~~~~~~~~-- 310 (396)
T TIGR00882 238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-----GAKNALLIAGTIMSVRIIGSSFATTALEV-- 310 (396)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHhcCChHHH--
Confidence 344555443 55666778777776666554 77889999997 56667777777777766666666666532
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHH-HHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSL-CSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~-~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
....++.+++..........+..+.. +++.++...+. .+....+|..+++.++|++.+..||+.+|.+.++..++.
T Consensus 311 ~~~~~l~g~~~~~~~~~~~~~~~~~~--~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 311 VILKMLHAFEVPFLLVGCFKYITSQF--DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF 387 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 23345555554433222222222222 22344554544 567889999999999999999999999999988777665
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-08 Score=99.82 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=90.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
.|.++...+++.....++..+..++.|++.||+++|+++.++.++.++..+.. .... .. +..-.+.+
T Consensus 33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~-~~~~---------~~---~~~r~l~G 99 (393)
T PRK11195 33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM-LFGI---------HP---LLAYGLVG 99 (393)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH-HHHH---------HH---HHHHHHHH
Confidence 66777888888888889999999999999999999999999887776643321 1110 11 11122344
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHH
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~ 426 (499)
...+.......+++.|.+|+++++++.|+.+...++|..+||.++|++.+.
T Consensus 100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444568899999999999999999999999999999999999874
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.4e-08 Score=97.98 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=95.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
++|+++.+.|.......++..++.++.+++.||+|+|+.+..+.++.++..+.. .+ .++.+..+..-.+.
T Consensus 49 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~-~~---------~~~~~~l~~~r~l~ 118 (394)
T PRK10213 49 DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLV-SF---------ANSFSLLLIGRACL 118 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH-HH---------HChHHHHHHHHHHH
Confidence 378999999998888889999999999999999999999988888777644321 11 11222222233444
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
++..+.......+++.|.+|++++++..++.....++|..++|.+++.+.+.+|
T Consensus 119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g 172 (394)
T PRK10213 119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG 172 (394)
T ss_pred HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 555555444456788899999999999999999999999999999999988765
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.6e-08 Score=100.81 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=92.8
Q ss_pred HHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc-chHHHHHHH
Q 041017 71 TQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE-KLHLVFAVS 148 (499)
Q Consensus 71 ~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~ 148 (499)
.+++.+..++ ++.+.+.+.++..++..+ .|++|+++||+ +||+.+..+..+.+++.+.+.+.+ +.+ ....
T Consensus 245 ~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 316 (437)
T TIGR00792 245 QVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-----GRKILFAGGILLMVLGYLIFFFAGSNLP--LILV 316 (437)
T ss_pred hheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcchhHH--HHHH
Confidence 3455554555 566677666666666665 88999999997 566667777777776666655543 322 2233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhccCC-----CCcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 149 ALTASSAGIAIADVTIDACVAQNSICH-----PSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv~e~~~~~-----~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
..++.+++.+...+...+++.|..+.+ ++.+|...++.+....+|..+++.+.|.+.+..|+
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 317 LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445567777777777788888876421 24578889999999999999999999999886665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.2e-08 Score=102.13 Aligned_cols=161 Identities=15% Similarity=0.053 Sum_probs=92.2
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcch-H--HHHHhHH--HHHHHHHHHh-c
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRP-Y--FILAGCL--GVFSMLLLSM-H 138 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~-~--ll~~~~~--~~~~~~~~~~-~ 138 (499)
......|.|+++++|.+..+.|+..++..++..+ .++.|+++||...++..++. . +..+... ..+..+.... .
T Consensus 279 ~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (465)
T TIGR00894 279 ILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS 358 (465)
T ss_pred HHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445667788888999999999988877776655 88999999986322212211 1 1111111 1111111222 1
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhccc---ChhHHHH
Q 041017 139 EKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLI---GPKGVFG 215 (499)
Q Consensus 139 ~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~---gw~~~f~ 215 (499)
.+... .+....+.+.+.+...........|.. |+.+|.++++.+....+|+.++|.+.|.+.+.. +|+..|.
T Consensus 359 ~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~ 433 (465)
T TIGR00894 359 AAFYL--TIIILTLANAVSSGPLAGVLINSLDLA---PRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFL 433 (465)
T ss_pred CchHH--HHHHHHHHHHHhhhhhhhhhhchhhcC---hhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHH
Confidence 22221 122222222222222222222223433 457899999999999999999999999887643 4888888
Q ss_pred HHHHHHHHHHHHHhcc
Q 041017 216 LMTIPAGLLILVGILL 231 (499)
Q Consensus 216 ~~a~~~~~~~~~~~~~ 231 (499)
+.++..++..+.....
T Consensus 434 ~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 434 IMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHHHHHHeeee
Confidence 8776665554443333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-07 Score=98.77 Aligned_cols=148 Identities=18% Similarity=0.158 Sum_probs=115.3
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
...+|.+.++++|.++...|++.++..+|.++ ..+.+.+.+|. ++++.+..+.+..+++++.+++.++.+..
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-----~~~~lv~~~~~~~a~~~~~lal~~~~~~~-- 310 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-----SSRRLVLLASLLFALALLLLALSPSFWLA-- 310 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CcchhhHHHHHHHHHHHHHHhcchHHHHH--
Confidence 34556677888999999999999999999887 55677888775 45556777888888888888888887642
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~ 224 (499)
....++.|++.....+..++.+-+..+ ++.||++.+++++....+..+|..+.|.+.+.+|.+..+.+.++..++.
T Consensus 311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P--~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~ 386 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSLNTLVQLSVP--DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS 386 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 344566777777777666666666553 3689999999999999999999999999999999998888766654444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-08 Score=98.54 Aligned_cols=131 Identities=17% Similarity=0.115 Sum_probs=92.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|+|+.+.|++.+...++..++.++.|++.||+|+|+.+..+.+...++.+....... .. ....++....+..-.+.+
T Consensus 46 lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~r~l~G 123 (392)
T PRK12382 46 LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAI-LP-VSAPFKFALLVVGRLILG 123 (392)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhc-cc-cchhHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999988876665543321111100 00 000112222222333444
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
...+....+..++..+..|+++|++++|..+...++|..++|.+++.+.+..|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 124 FGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred HHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44444333345677889999999999999998889999999999999887655
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-08 Score=103.54 Aligned_cols=156 Identities=17% Similarity=0.039 Sum_probs=90.4
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccC-CC-CcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIF-GY-RRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~-g~-~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
..+.|+.+++|+++.+.+.+.++..+...+ .++.|+++||+..+ +. +|+..+.+...+..+..+..+..++....
T Consensus 274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~-- 351 (476)
T PLN00028 274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAA-- 351 (476)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHH--
Confidence 455677778899999999988888777665 88999999998321 11 12333333333333333334444443321
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHH
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLIL 226 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~ 226 (499)
+....+.+++.........+++.+.. |+.||...++.+.+.++|+.+++.+.+ ..+..+|+..|++.++..++..+
T Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~ 427 (476)
T PLN00028 352 IVVMILFSIFVQAACGATFGIVPFVS---RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTL 427 (476)
T ss_pred HHHHHHHHHHHHHhhhhhcccCcccC---hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHH
Confidence 22223333443333333334444442 457888888887766677766665543 11234699999888776665544
Q ss_pred HHhcc
Q 041017 227 VGILL 231 (499)
Q Consensus 227 ~~~~~ 231 (499)
+.+++
T Consensus 428 ~~~~~ 432 (476)
T PLN00028 428 PVAFI 432 (476)
T ss_pred HHHhe
Confidence 44444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=97.88 Aligned_cols=138 Identities=18% Similarity=0.153 Sum_probs=82.4
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHH-HHH-hccchHH
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSML-LLS-MHEKLHL 143 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~-~~~-~~~~~~~ 143 (499)
.....+.|+++.+|+++.+.++......++..+ .++.|+++||+ +||+.++.+.....+... ... ..++...
T Consensus 257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (434)
T PRK15075 257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-----GRRPVLIAFTVLAILTAYPALSWLVAAPSF 331 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 444566788877899999988877776666555 78899999997 344454444333222111 111 1111111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHH-HHHHHHHHHHHHHhHhhcccChh
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSL-CSAIGALIGYSISGIFVHLIGPK 211 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~-~~~~G~~lg~~l~g~l~~~~gw~ 211 (499)
.......++.+++.+........+..|..+ +++|+...++.+. +..++..++|.+.|++.++.|++
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p--~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 332 ARMLAVELWLSFLYGSYNGAMVVALTEVMP--AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCC--CCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 111112223334444444444566778774 3678888887543 44455777999999999988864
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.82 E-value=8e-08 Score=96.10 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=95.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.|+.+.+++.....++..++.++.|++.||+|+|+.+..+.++.++..+... +. ++.+..+....+.+
T Consensus 27 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~l~g 96 (352)
T PF07690_consen 27 LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-FA---------SNFWLLLIARFLLG 96 (352)
T ss_dssp STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-HH---------CCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-hh---------hhHHHHhhhccccc
Confidence 788999999999999999999999999999999999988888777777522211 11 22222333344556
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+..+.......+++.|..|+++|++.+|+.+...++|..++|.+++.+.+..|
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~ 149 (352)
T PF07690_consen 97 IGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG 149 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH
T ss_pred cccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc
Confidence 66556566667889999999999999999999999999999999998886655
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-07 Score=95.97 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=85.0
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH--h--ccchH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS--M--HEKLH 142 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~--~--~~~~~ 142 (499)
..+.+.++++++|.+..+.+...++..+...+ +++.|+++||+ +||+.++++..+.++...... . .++..
T Consensus 263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (432)
T PRK10406 263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-----GRRTSMLCFGSLAALFTVPILSALQNVSSPY 337 (432)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 34556677778899999988877766555444 88999999997 444444444333322222111 1 12222
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHH-HHHHHHHHHhHhhcccC-hhHHHHHHHHH
Q 041017 143 LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAI-GALIGYSISGIFVHLIG-PKGVFGLMTIP 220 (499)
Q Consensus 143 ~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~-G~~lg~~l~g~l~~~~g-w~~~f~~~a~~ 220 (499)
. .+....+..++.+.......++..|..+ ++.|+..+|+.+...++ +....|.+.+.+ +..| |...++..++.
T Consensus 338 ~--~~~~~~~~~~~~~~~~~~~~~~~~e~fp--~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~ 412 (432)
T PRK10406 338 A--AFGLVMCALLIVSFYTSISGILKAEMFP--AQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLM 412 (432)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHH
Confidence 1 1111121222222222335567788874 36899999988765443 334467667754 4445 54455554444
Q ss_pred HHHHHHHHhcccC
Q 041017 221 AGLLILVGILLNE 233 (499)
Q Consensus 221 ~~~~~~~~~~~~e 233 (499)
.++..+..+++++
T Consensus 413 ~~i~~~~~~~l~~ 425 (432)
T PRK10406 413 AVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHhhh
Confidence 4444344344443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=94.75 Aligned_cols=143 Identities=11% Similarity=-0.006 Sum_probs=93.8
Q ss_pred HHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc---chHHHHH
Q 041017 71 TQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE---KLHLVFA 146 (499)
Q Consensus 71 ~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~---~~~~~~~ 146 (499)
.+.++++++|.++.+.++......++..+ .++.|.++||+ +||+.+..+..+..++.....+.+ +......
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 312 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-----PLRSLIRMGLWPMVAGLLLAALATVISSHAYLWL 312 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence 45566778899999999876665555555 77899999996 555666666666665555554432 1111122
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
.....+.++|.+...+......... .+++||++.+..+....+|..+|+.+++.+.+..++....+...+..
T Consensus 313 ~~~~~~~g~g~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 384 (406)
T PRK15402 313 TAGLSLYAFGIGLANAGLYRLTLFS---SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANG 384 (406)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhh---ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence 3344555666665544433333222 23689999999999999999999999999988877765444433333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-07 Score=95.82 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=91.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
++|+|..+.|+......++..++.++.+++.||+|+|+.+..+.++.++..+.. .. .++.+..+..-.+.
T Consensus 32 ~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~-~~---------~~~~~~l~~~r~l~ 101 (382)
T PRK10091 32 DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF-TL---------SSSYLMLAIGRLVS 101 (382)
T ss_pred HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH-HH---------hCcHHHHHHHHHHH
Confidence 378899999999899999999999999999999999999988877776644321 11 12222222223344
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
++..+.......+.+.+..|++++++.+|+......+|..++|.+++.+.+..|
T Consensus 102 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 155 (382)
T PRK10091 102 GFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS 155 (382)
T ss_pred HhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc
Confidence 444444333345677888999999999999999899999999999998887554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=100.91 Aligned_cols=125 Identities=20% Similarity=0.256 Sum_probs=94.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
++|+++.+.+++.....++.+++.++.+++.||+++|+.+..+.++..+..+.. .. .++....+....+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~ 115 (398)
T TIGR00895 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLC-AL---------ATNVTQLLILRFLA 115 (398)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH-HH---------ccchHHHHHHHHHH
Confidence 378899999999888889999999999999999999999888776665543221 11 11222222223344
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
++..+....+..+++.|..|++.|++.+|+.+...++|..+++.+++.+.+..|+
T Consensus 116 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 116 GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred hcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 4444544555678899999999999999999999999999999999998876653
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=98.85 Aligned_cols=138 Identities=15% Similarity=0.080 Sum_probs=96.7
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc-chHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE-KLHL 143 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~-~~~~ 143 (499)
......++|++..+|.++.+.++......++... .++.|.++||+ +||+.++.+..+..+...++.+.+ +.+.
T Consensus 279 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (471)
T PRK10504 279 MLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-----GYRRVLVATTLGLALVSLLFMLVALLGWY 353 (471)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHHHHhccccccH
Confidence 3445566777767899999999887776666655 78999999997 566667777766666655555432 1111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
.......++.+++.+.......+++.+..+ +++++..+++.+....+|..+|+.++|.+.+..|+
T Consensus 354 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 354 YLLPFVLFLQGMVNSTRFSSMNTLTLKDLP--DNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111223345566666666666677777653 36899999999999999999999999988876554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-07 Score=97.80 Aligned_cols=156 Identities=18% Similarity=0.088 Sum_probs=99.6
Q ss_pred hhHHHHhhhccCCChhHHHHHHH-hhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHH---HHhc-cchH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAG-ITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLL---LSMH-EKLH 142 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~-~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~---~~~~-~~~~ 142 (499)
...++++.+++|.|+++++.... ...++..+ .++.|+++||+ +||+.++++.++.+++.+. ++.. ++..
T Consensus 243 ~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-----g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~ 317 (491)
T PRK11010 243 SLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-----SLFRALMIFGILQGVSNAGYWLLSITDKNLY 317 (491)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 34455666679999999999874 44556665 77899999997 3444444444433333222 2332 2322
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHH
Q 041017 143 LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAG 222 (499)
Q Consensus 143 ~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~ 222 (499)
. .....++..+..+.......++..+..++ +.+++.+++.+...++|..++++++|.+.+..||+..|.+.++..+
T Consensus 318 ~--l~~~~~l~~~~~g~~~~~~~a~~~~l~~~--~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l 393 (491)
T PRK11010 318 S--MGAAVFFENLCGGMGTAAFVALLMTLCNK--SFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAV 393 (491)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 1 12222333333333334445666677643 4677888999999999999999999999999999998888777766
Q ss_pred HHHHHHhcccC
Q 041017 223 LLILVGILLNE 233 (499)
Q Consensus 223 ~~~~~~~~~~e 233 (499)
+.++....+++
T Consensus 394 ~~l~~~~~~~~ 404 (491)
T PRK11010 394 PGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHh
Confidence 65444444444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-07 Score=94.49 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=93.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|+|+.+.+++.....++..++.++.+++.||+++|+.+..+.++.++..+.. .. .++.........+.+
T Consensus 21 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~-~~---------~~~~~~~~~~~~l~g 90 (377)
T PRK11102 21 FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC-AL---------AQTIDQLIYMRFLHG 90 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHH-HH---------HccHHHHHHHHHHHH
Confidence 78899999999888999999999999999999999999888776666643321 11 112222222333445
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+..+....+..+++.+..|+++|++.+++.+...++|..++|.+++.+.+..|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 143 (377)
T PRK11102 91 LAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS 143 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555566788999999999999999999999999999999999988665
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-08 Score=104.00 Aligned_cols=155 Identities=11% Similarity=-0.014 Sum_probs=96.7
Q ss_pred hhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc--cchHHHHHHHHHHH
Q 041017 76 KDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH--EKLHLVFAVSALTA 152 (499)
Q Consensus 76 ~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 152 (499)
.++.|.+....++......+...+ .++.|+++||+ +||+.++.+.++.+++.++++.. ++..........++
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 372 (479)
T PRK10077 298 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-----GRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 372 (479)
T ss_pred HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-----cChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 346788876666555545444444 78899999997 57777888887777776665432 12111111112222
Q ss_pred HHhHHHHH-HHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHh------HhhcccChhHHHHHHHHHHHHHH
Q 041017 153 SSAGIAIA-DVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISG------IFVHLIGPKGVFGLMTIPAGLLI 225 (499)
Q Consensus 153 ~~~g~~~~-~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g------~l~~~~gw~~~f~~~a~~~~~~~ 225 (499)
.+.+.+.. .+...+++.|..+ +++|+..+++.+....+|.++++.+.+ ++.+..+|+..|++.++..++..
T Consensus 373 ~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 373 YVAAFAMSWGPVCWVLLSEIFP--NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHhccccchhHHHhHhhCC--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence 22222221 2345677788864 368999999998888888888765544 34457788888888776655553
Q ss_pred H-HHhcccCCCCC
Q 041017 226 L-VGILLNEPQVP 237 (499)
Q Consensus 226 ~-~~~~~~e~~~~ 237 (499)
+ .+++.||+++.
T Consensus 451 ~~~~~~~~e~~~~ 463 (479)
T PRK10077 451 LFMWKFVPETKGK 463 (479)
T ss_pred HHHHhccccCCCC
Confidence 3 44567776543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-07 Score=95.23 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=90.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.|+.+.++......++..++.++.|++.||+|+|+.+..+.+..++..+.. .. .++....+....+.+
T Consensus 33 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~-~~---------~~~~~~~~~~~~l~g 102 (392)
T PRK10473 33 LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC-SL---------AETSSLFLAGRFLQG 102 (392)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH-HH---------hCcHHHHHHHHHHHH
Confidence 78899899998888889999999999999999999999888776666543321 11 112122222223344
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
...+....+..+++.|..|+++|++..|+.+...++|..++|.+++.+.+..|
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 44444444556788899999999999999999999999999999888776543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-08 Score=95.67 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=102.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHH-HHHHHH
Q 041017 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVID-EGISRM 376 (499)
Q Consensus 298 ~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~ 376 (499)
-+....|++.+..++...+.+..+|++.|++|||.+++.+.+..+++++.. . ....+.++.. =.+.+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~-~----------~S~~F~afv~aR~l~G- 132 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLW-A----------LSRNFAAFVLARFLGG- 132 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH-H----------HHHHHHHHHHHHHhhh-
Confidence 455667888888889999999999999999999999999887777754321 1 1111211111 11111
Q ss_pred HHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHh
Q 041017 377 VGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIF 456 (499)
Q Consensus 377 ~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~ 456 (499)
+......+..++++|+.+++.|+..++..+....+|-++||.+||++.....+. ..|-.....+.++.....--..+.+
T Consensus 133 i~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~-g~~p~alP~~~v~i~a~~~v~~~~~ 211 (451)
T KOG2615|consen 133 IFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSIS-GSYPFALPCLLVFILAAGDVTFFPW 211 (451)
T ss_pred hccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhh-ccCchHHHHHHHHHHHHHHHHHHHH
Confidence 122234456789999999999999999999999999999999999999822111 1221111111111111111234457
Q ss_pred hcCCCCCCCCCC
Q 041017 457 LVPRGDPDTSFL 468 (499)
Q Consensus 457 ~lp~~~~~~~~l 468 (499)
++|||-|..++-
T Consensus 212 ~lpETL~~rk~~ 223 (451)
T KOG2615|consen 212 FLPETLPLRKRN 223 (451)
T ss_pred hCCccccchhhc
Confidence 999996655544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-08 Score=101.64 Aligned_cols=188 Identities=19% Similarity=0.146 Sum_probs=116.4
Q ss_pred cHHHHHHHHhhhccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhh-hhhHHhhhcccc
Q 041017 32 TPIYWIKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWI-VKPLWGLLTDVL 110 (499)
Q Consensus 32 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~-~~pl~G~lsD~~ 110 (499)
.+..|... +....++++.+.. +.......+.-...|.|++|.+|.+-.+.|++.++..+... .+.+.|.++||.
T Consensus 247 ~~vP~~~i----~ts~~vwai~~~~-f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l 321 (466)
T KOG2532|consen 247 PPVPYKAI----LTSPPVWAIWISA-FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL 321 (466)
T ss_pred CCCCHHHH----HcCHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678333 3334445554444 34444444566677789999999999999999988777765 499999999987
Q ss_pred ccCC----CCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHH
Q 041017 111 PIFG----YRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLC 186 (499)
Q Consensus 111 ~~~g----~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~ 186 (499)
..++ .+||-.=.++....+++++.+++.++......+.++. .+.+.... ...+.......+.|+..+.++++.
T Consensus 322 ~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~-~~~~~~g~--~~~Gf~~~~~~~apq~a~~l~g~~ 398 (466)
T KOG2532|consen 322 TFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLT-IAIGLSGF--NISGFYKNHQDIAPQHAGFVMGII 398 (466)
T ss_pred hhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHH-HHHHHccc--chhhhHhhhhhccchHHHHHHHHH
Confidence 4311 1334344455555666666666665322111111111 11111111 111222222111245678899999
Q ss_pred HHHHHHHHHHHHHHHhHhhc---ccChhHHHHHHHHHHHHHHHH
Q 041017 187 SLCSAIGALIGYSISGIFVH---LIGPKGVFGLMTIPAGLLILV 227 (499)
Q Consensus 187 ~~~~~~G~~lg~~l~g~l~~---~~gw~~~f~~~a~~~~~~~~~ 227 (499)
+....+...++|.+.|.+.. ...||.+|++.++..++..++
T Consensus 399 ~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 399 NFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred HHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence 99999999999999999883 347999999988877766433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-07 Score=92.43 Aligned_cols=152 Identities=16% Similarity=0.088 Sum_probs=88.8
Q ss_pred HHHhhhccCCChhHHHHHHHhhh-chhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHH---HHhcc-chHHHH
Q 041017 72 QYYMKDVQKVQPSEAQVYAGITS-LPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLL---LSMHE-KLHLVF 145 (499)
Q Consensus 72 ~~~l~~~~g~s~~~~g~~~~~~~-l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~---~~~~~-~~~~~~ 145 (499)
++++.+++|+++++.+++.+... .+..+ .++.|.++||+ +||+.+..+.....+..+. +++.+ +.+.
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-----g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~-- 305 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-----GLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWT-- 305 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH--
Confidence 34566779999999999876544 34455 78899999997 4455555544444433322 23433 3332
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLI 225 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~ 225 (499)
.....++..+..+.......+....+.+++ ..++.++..+...++|.+++++++|.+.+.+||+..|.+.++..++..
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~ 383 (402)
T PRK11902 306 MALAIGIENLCGGMGTAAFVALLMALCNRS--FSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGL 383 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 122222222232333223333344444322 123345666666678888777899999999999999998877766554
Q ss_pred HHHhccc
Q 041017 226 LVGILLN 232 (499)
Q Consensus 226 ~~~~~~~ 232 (499)
+.....+
T Consensus 384 ~~~~~~~ 390 (402)
T PRK11902 384 ALLWLMR 390 (402)
T ss_pred HHHHHHh
Confidence 4433333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-07 Score=97.70 Aligned_cols=148 Identities=18% Similarity=0.007 Sum_probs=95.7
Q ss_pred ccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhH
Q 041017 78 VQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAG 156 (499)
Q Consensus 78 ~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 156 (499)
.++.+......+.+ +.... .++.+.++||+ +||+.+.++.++.+++++.+.+.++..........++.+++
T Consensus 352 ~~~~~~~~~~~~~~---~~~i~~~~~~~~l~dr~-----grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 423 (505)
T TIGR00898 352 NLGGNIYLDLFISG---LVELPAKLITLLLIDRL-----GRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFG 423 (505)
T ss_pred ccCCChHHHHHHHH---HHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 45555443333322 22222 56788999997 57777777777777777777666544211122233444455
Q ss_pred HHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHHHhcccCCCC
Q 041017 157 IAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILVGILLNEPQV 236 (499)
Q Consensus 157 ~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~~ 236 (499)
.+.......++..|..+ ++.|+..+++.+....+|.+++|.+.+ + ...++...+.+.++..++..+..+++||++.
T Consensus 424 ~~~~~~~~~~~~~e~~p--~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 424 ITSAFQMVYLYTAELYP--TVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred HHHHHHHHHHHhccccc--HHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 55455556677778764 357999999999999999999999988 3 3445666777767666665555667898765
Q ss_pred C
Q 041017 237 P 237 (499)
Q Consensus 237 ~ 237 (499)
.
T Consensus 500 ~ 500 (505)
T TIGR00898 500 V 500 (505)
T ss_pred C
Confidence 4
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-07 Score=94.02 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=91.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
.|+|..+.|+......+...+...+.|++.||+++|+.+..+.+..++..+.. .. .++.+..+....+.+
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~-~~---------~~~~~~l~~~~~l~g 110 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM-AI---------AHEPWLLWLSCILSG 110 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH-HH---------hccHHHHHHHHHHHH
Confidence 78999999999888888888888999999999999999988877776644321 11 112222222333444
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+..+....+..+++.+..|++++++++|+.+...++|..+||.++|.+. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g 162 (400)
T PRK11646 111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD 162 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 4444444445678889999999999999999999999999999999988 444
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.7e-07 Score=92.74 Aligned_cols=152 Identities=23% Similarity=0.185 Sum_probs=99.3
Q ss_pred ccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc----ch--HHH-HHHH-
Q 041017 78 VQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE----KL--HLV-FAVS- 148 (499)
Q Consensus 78 ~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~----~~--~~~-~~~~- 148 (499)
+-|++..++.+......+-..+ ..+...+.||+ +|||.++.+..++.++.+++...- .. +.. ..+.
T Consensus 299 ~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-----gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~ 373 (485)
T KOG0569|consen 299 TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-----GRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA 373 (485)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5689988888776555554443 77788999997 789999999888888877665431 11 111 1112
Q ss_pred -HHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH-HH
Q 041017 149 -ALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL-IL 226 (499)
Q Consensus 149 -~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~-~~ 226 (499)
..+...++.+.. +...-+.+|+.+ |..|..++++......+...+-...--.+.+.+|- ..|.+..++..+. +.
T Consensus 374 ~~~~~~~f~~G~g-pi~~fi~aELf~--~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~ 449 (485)
T KOG0569|consen 374 IFLFIISFAIGPG-PIPWFIGAELFP--QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIY 449 (485)
T ss_pred HHHHHHhhhcCCC-chhHHHHHHhCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHH
Confidence 223333444333 334556789985 46788888887777766666655555556666665 6677767776665 55
Q ss_pred HHhcccCCCCCC
Q 041017 227 VGILLNEPQVPD 238 (499)
Q Consensus 227 ~~~~~~e~~~~~ 238 (499)
.++++||++.+.
T Consensus 450 ~~~~lPETkgr~ 461 (485)
T KOG0569|consen 450 LYRYLPETKGRT 461 (485)
T ss_pred HHHhCcccCCCC
Confidence 678899997554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-07 Score=91.53 Aligned_cols=146 Identities=18% Similarity=0.049 Sum_probs=93.5
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhc-hhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHH-HHHhc-----cch
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSL-PWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSML-LLSMH-----EKL 141 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l-~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~-~~~~~-----~~~ 141 (499)
..++|++| .|.+++++|++...... ...+ ..+.|++.||+ ++|+.+..+..+..+..+ ..... ++.
T Consensus 230 ~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (390)
T TIGR02718 230 LSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-----GLWRTFILGVGLAGSLALLWFAQAAFWLAPGI 303 (390)
T ss_pred HhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHcccCCcH
Confidence 34567764 79999999998776654 4445 56799999997 455566655544422221 11111 121
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 142 HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 142 ~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
.. ......+.+++.+...+...+...+..+ +++.+++.++..+...++|..+||.++|.+.+..|++..|++.++..
T Consensus 304 ~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~ 380 (390)
T TIGR02718 304 AV--AWSCSAFGSLITGITSVAIYTAFMRFAG-DGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLA 380 (390)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 11 1112222333444444444555555442 23678999999999999999999999999999999999998876655
Q ss_pred HHH
Q 041017 222 GLL 224 (499)
Q Consensus 222 ~~~ 224 (499)
++.
T Consensus 381 l~a 383 (390)
T TIGR02718 381 VLA 383 (390)
T ss_pred HHH
Confidence 443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.7e-07 Score=92.65 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=86.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.|+.+.++......++..++.++.|++.||+|+|+.+..+.+...+..+.. .. .++....+....+.+
T Consensus 38 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~---------~~~~~~l~~~~~~~g 107 (394)
T PRK11652 38 LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA-LF---------AHSLTVLIAASAIQG 107 (394)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH-HH---------HccHHHHHHHHHHHH
Confidence 78999999999889999999999999999999999999888766665543321 11 112122222222333
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+..+........+..+..+++.++...+..+....++..++|.+++.+.+..|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 160 (394)
T PRK11652 108 LGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG 160 (394)
T ss_pred hhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33322222223566778888889999999888888899999999998877554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.8e-08 Score=94.77 Aligned_cols=147 Identities=17% Similarity=0.179 Sum_probs=94.7
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhh-hhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc-------
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWI-VKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE------- 139 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~-~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~------- 139 (499)
....+.|+++++|+++.+.|...+...+.-. ..|++|++|||+ | +||-. .......+++..+.++.+
T Consensus 238 s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~---G-g~rv~-~~~f~~~~~~~~~l~~~~~~~~~~~ 312 (417)
T COG2223 238 SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI---G-GRRVT-LAVFVGMALAAALLSLFLTGFGHGG 312 (417)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc---c-chhHH-HHHHHHHHHHHHHHHccccccccCc
Confidence 4455668899999999999988777765554 599999999998 3 44443 334444444555555443
Q ss_pred chHHH--HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhHHHHH
Q 041017 140 KLHLV--FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKGVFGL 216 (499)
Q Consensus 140 ~~~~~--~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~~ 216 (499)
+.... ..+...+..+.|.+ .+..++..+. |++.|.+.|+.....++|...-|..-|...+..| ++..|++
T Consensus 313 ~~~~~~~~~l~l~~~~G~GnG----svfk~Ip~if---~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~ 385 (417)
T COG2223 313 SFVVFVAVFLALFVFAGLGNG----SVFKMIPVIF---PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFML 385 (417)
T ss_pred chHHHHHHHHHHHHHhccCcc----hheeechHHH---HhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHH
Confidence 12111 11222233444433 2334444443 4578888999888888988777877788887776 8888888
Q ss_pred HHHHHHHHHH
Q 041017 217 MTIPAGLLIL 226 (499)
Q Consensus 217 ~a~~~~~~~~ 226 (499)
.....++...
T Consensus 386 ~~~~~~~a~v 395 (417)
T COG2223 386 LLAFYLVALV 395 (417)
T ss_pred HHHHHHHHHH
Confidence 7766665533
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-07 Score=96.95 Aligned_cols=124 Identities=13% Similarity=0.059 Sum_probs=95.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.|+.+.+++.....++..++.++.+++.||+|+|+.+..+.++..+..+... . .++....+....+.+
T Consensus 32 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~-------~~~~~~l~~~~~~~G 101 (485)
T TIGR00711 32 LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG---V-------APNLELMIIFRVIQG 101 (485)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh---C-------cCCHHHHHHHHHHHH
Confidence 788888889998899999999999999999999999999888777666443211 1 122222233334555
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
+..+....+..+++.|.+|++.|++.+|++.....+|..++|.++|.+.+..|+
T Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 155 (485)
T TIGR00711 102 FGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW 155 (485)
T ss_pred hhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence 555555555568889999999999999999999999999999999998876553
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-07 Score=93.22 Aligned_cols=150 Identities=17% Similarity=0.080 Sum_probs=108.3
Q ss_pred CCCChhH-HHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 296 PSFSQET-VGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 296 ~g~s~~~-~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
+|+|+.+ .|.+..+...+..+..+..|.+.||+|.|+++.++.+...+..+... +.. ........-++.
T Consensus 56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~-fa~---------Sl~~L~i~R~ll 125 (511)
T TIGR00806 56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL-LGT---------SVWHMQLMEVFY 125 (511)
T ss_pred cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHH
Confidence 8999998 89999888999999999999999999999999988877776543211 110 111112233445
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHH
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCV 454 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~ 454 (499)
++..+..+ +...++.+.+|++.|+++.|+.++..++|..+++.++++ ...+|. ..|.. +..+......+++++
T Consensus 126 GvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gW--r~y~~---Ln~Isl~s~~~a~~~ 198 (511)
T TIGR00806 126 SVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGW--ISYST---LNIISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCc--hhHHH---HHHHHHHHHHHHHHH
Confidence 55555556 677889999999999999999999999999999999998 444442 23433 334444445666667
Q ss_pred HhhcCCCC
Q 041017 455 IFLVPRGD 462 (499)
Q Consensus 455 ~~~lp~~~ 462 (499)
.+++|..+
T Consensus 199 a~~LP~~~ 206 (511)
T TIGR00806 199 ALFLKRPK 206 (511)
T ss_pred HHhCCCCc
Confidence 77888443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.7e-07 Score=90.76 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=90.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
.+|+|+.+.+++.....++..++.++.+++.||+|+|+.+..+.++..+..+.. .+.. ++.+..+....+.
T Consensus 31 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~-~~~~--------~~~~~~~~~~~~~ 101 (366)
T TIGR00886 31 DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA-GLAV--------QSYSVLLLLRLFI 101 (366)
T ss_pred HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHh--------hhHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999888877766654321 1111 0222222222333
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHh
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHIL 427 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~ 427 (499)
++..+ ...+...++.+.+|+++|++..++.....++|..+++.+++.+...+
T Consensus 102 g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 102 GIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153 (366)
T ss_pred HHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 43332 34455678889999999999999999999999999999888777643
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-06 Score=90.61 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=99.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.|....+.......++..++.++.|++.||+|+|+.+..+.++..+..+.. .. .++....+..-.+.+
T Consensus 46 ~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~-~~---------a~~~~~l~~~r~l~G 115 (413)
T PRK15403 46 FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT-LF---------TTSMTQFLIARFIQG 115 (413)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH-HH---------cCCHHHHHHHHHHHH
Confidence 67788888887778888889999999999999999999888876666543321 11 112112222223333
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHH-
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCV- 454 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~- 454 (499)
+..+.......+...|..|++.+++.+++.+...++|..+||.+++.+.+..|+. ..+.+.++..++.++.
T Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~--------~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 116 TSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK--------VLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHHHHHHH
Confidence 3333222223466778899999999999999999999999999999988765421 2233334444444433
Q ss_pred HhhcCCCCC
Q 041017 455 IFLVPRGDP 463 (499)
Q Consensus 455 ~~~lp~~~~ 463 (499)
.+.+||+++
T Consensus 188 ~~~lp~~~~ 196 (413)
T PRK15403 188 LLAMPETVK 196 (413)
T ss_pred HHhCCCCcc
Confidence 346788654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-07 Score=92.03 Aligned_cols=132 Identities=12% Similarity=0.020 Sum_probs=91.9
Q ss_pred hhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHH
Q 041017 69 VGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAV 147 (499)
Q Consensus 69 ~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (499)
...+.+++ +.|.++.+.+...+...++..+ +++.|+++||++ +||..+..+..+.+++.+.+.+.++.....
T Consensus 218 ~~lp~~~~-~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 290 (355)
T TIGR00896 218 GWLPAILI-SHGASAATAGSLLALMQLAQAASALLIPALARRVK----DQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-- 290 (355)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHHHHHHHHHHHHHHHHHHHhhhhHHHH--
Confidence 34556666 4799999999998888888776 889999999972 455566666666666666565554433211
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG 209 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g 209 (499)
...+.+++.+...+...+.+.+..+ ++++++...++.+....+|..++|.+.|++.++.|
T Consensus 291 -~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 291 -WALVLGLGQGGAFPLALTLIGLRSR-QAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred -HHHHHHHhhhhHhHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344566766655555555544332 23567888888888888999999999999998765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=92.75 Aligned_cols=163 Identities=10% Similarity=0.093 Sum_probs=105.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHH
Q 041017 297 SFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRM 376 (499)
Q Consensus 297 g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (499)
+.++.+.+++.....++.+++.++.+++.||+|+|+.+.++.++..+..+... +.. +.. ........+..-.+.++
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~-~~~--~~~-~~~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG-LSP--GSS-PKSVMATLCFWRFWLGV 127 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-Hcc--Ccc-cchHHHHHHHHHHHHHH
Confidence 34556678888888999999999999999999999998887766666433211 111 100 00001222233345555
Q ss_pred HHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC----cc----------cCCChhHH-HH
Q 041017 377 VGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV----TR----------TQFHNLWL-AI 441 (499)
Q Consensus 377 ~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~----~~----------~~~~~~~~-~~ 441 (499)
..+....+..++++|.+|++.||+..++.+...++|..+++.++..+...+.. .. ...+.-|. .+
T Consensus 128 ~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~ 207 (502)
T TIGR00887 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI 207 (502)
T ss_pred HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH
Confidence 55655566678999999999999999999999999999999988876653321 00 00111233 33
Q ss_pred HHHHhHhHHHHHHHhhcCCCCC
Q 041017 442 LIRNILRITPLCVIFLVPRGDP 463 (499)
Q Consensus 442 ~i~~~~~li~l~~~~~lp~~~~ 463 (499)
.+.++..++.+.+.+++||+..
T Consensus 208 ~~~~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 208 GFGAVPALLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHHHHhCCCCHH
Confidence 4444444555555568899854
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=91.06 Aligned_cols=168 Identities=11% Similarity=0.125 Sum_probs=115.8
Q ss_pred hccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh
Q 041017 59 SQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM 137 (499)
Q Consensus 59 ~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~ 137 (499)
.+|+. ++..... .|.++++|++.++...+.-+..+..++ ..++|++.||+ |.|+|+.++.+.++..+..+.-.+
T Consensus 294 ~dg~~-ti~~~~~-i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~---g~k~~~~l~~~l~~~~~i~~~g~~ 368 (477)
T PF11700_consen 294 SDGVN-TIISFAG-IYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF---GPKTKRTLLISLILWIIIPLYGLF 368 (477)
T ss_pred HHHHH-HHHHHHH-HHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCchhHHHHHHHHHHHHHHHHHHH
Confidence 55654 2344443 467889999999987776666666555 67899999998 445446666666555332222112
Q ss_pred --------ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC
Q 041017 138 --------HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG 209 (499)
Q Consensus 138 --------~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g 209 (499)
.++.+.. + +..++.|+..+.......++.+|+.|+ ++.+...|++....-..+.+||.+.|.+.+..|
T Consensus 369 G~~~~~~g~~~~~~f-~-~~a~~~G~~~G~~qs~sRs~~~~LiP~--g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 369 GFWPSFFGLKSPWEF-W-VLAVLIGLFMGGIQSASRSLFSRLIPP--GREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HhhhcccCcccHHHH-H-HHHHHHHHHhhhHHHHHHHHHHHhCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2233322 2 233556777788888899999999964 556889999999999999999999999998765
Q ss_pred -hhHHHHHHHHHHHHHHHHHhcccCCC
Q 041017 210 -PKGVFGLMTIPAGLLILVGILLNEPQ 235 (499)
Q Consensus 210 -w~~~f~~~a~~~~~~~~~~~~~~e~~ 235 (499)
-|..+....++.++.+++.+.+++++
T Consensus 445 ~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 445 SQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred CchhHHHHHHHHHHHHHHHHhhccchh
Confidence 77777766666655555556666554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-05 Score=79.34 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=104.1
Q ss_pred chhhhhHHhHHhhhccchhhhhhhhHHHHhhhc-cCCChhHHHH-HHHhhhchhhh-hhHHhhhccccccCCCCcchHHH
Q 041017 46 WSFVLGVVIVYGISQGLGGALARVGTQYYMKDV-QKVQPSEAQV-YAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFI 122 (499)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~g~s~~~~g~-~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll 122 (499)
|+....+.+.|+|+.-+..+ -++..+ |+.+. .|++.+|+.- +.-+..-.+.. -.+...+.|.. |-||.++
T Consensus 3 w~~~~~llc~~gf~~~frPs-EPfl~~-yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-----~Ykpvii 75 (412)
T PF01770_consen 3 WKKITLLLCLFGFFKEFRPS-EPFLTP-YLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-----RYKPVII 75 (412)
T ss_pred chHHHHHHHHHHHHHhcCCC-CccchH-HHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-----hhhHHHH
Confidence 44445556677777766642 344444 55554 8999988753 11111122222 44578999986 7899999
Q ss_pred HHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHh
Q 041017 123 LAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISG 202 (499)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g 202 (499)
++.+...+...++-+.++...... .-+.-|++.+ +++++.+++=... ++++--++.+....+..+|..++..+|-
T Consensus 76 l~~~~~i~t~~lll~~~sv~~mq~--~q~~yg~~~a-~evay~sYiys~v--~~~~yq~vts~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 76 LQALSYIITWLLLLFGTSVLAMQL--MQFFYGLATA-AEVAYYSYIYSVV--DKEHYQKVTSYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHH--HHHHHHHHHH-HHHHHHHHheeec--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887877777777777654322 2233444444 3666777663333 3455566777778888888888887776
Q ss_pred Hhhc--ccChhHHHHHHHHHHHHHHHHHhcccC
Q 041017 203 IFVH--LIGPKGVFGLMTIPAGLLILVGILLNE 233 (499)
Q Consensus 203 ~l~~--~~gw~~~f~~~a~~~~~~~~~~~~~~e 233 (499)
.++. ..+.+....+......+.++..+++|.
T Consensus 151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 151 LLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5554 345556655533322233334444543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=89.14 Aligned_cols=149 Identities=12% Similarity=0.003 Sum_probs=96.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|+|+.+.|++.+...++..++.+..|++.||+|+|+++..+...... ... .... .++....+..-.+.+
T Consensus 21 ~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~-~~~--~~~~-------~~~~~~l~~~R~l~G 90 (368)
T TIGR00903 21 IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAA-AAG--RLLD-------PFNYEWLLACQLLAA 90 (368)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH-HHH--HHHH-------hccHHHHHHHHHHHH
Confidence 788999999998888899999999999999999988765544333222 111 0111 011122222223333
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHH-H
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLC-V 454 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~-~ 454 (499)
...+. ..+.....+|..|+++|+++.++.+....+|..+++.+++.+.+.+|+. ..+.+.+++.++..+ .
T Consensus 91 ~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr--------~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 91 LGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQ--------LLIIPIAAVAAAGIILV 161 (368)
T ss_pred hHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------HHHHHHHHHHHHHHHHH
Confidence 33332 3344556688999999999999999999999999999999998765522 223333333333333 3
Q ss_pred HhhcCCCCC
Q 041017 455 IFLVPRGDP 463 (499)
Q Consensus 455 ~~~lp~~~~ 463 (499)
.+++||+++
T Consensus 162 ~~~lp~~p~ 170 (368)
T TIGR00903 162 LAALPALPF 170 (368)
T ss_pred HHHcCCCCC
Confidence 447787643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.7e-07 Score=90.89 Aligned_cols=123 Identities=18% Similarity=0.095 Sum_probs=88.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.|+.+.++......++..++.++.|++.||+++|+.+..+.++..+..+.. .. .++....+....+.+
T Consensus 36 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~---------~~~~~~l~~~~~l~G 105 (401)
T PRK11043 36 LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM-LW---------VESAAQLLVLRFVQA 105 (401)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH-HH---------hcCHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999888776665543221 11 111111122222333
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+..+.......+++.+..|+++++..++..+...+++..++|.+++.+.+..|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 158 (401)
T PRK11043 106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG 158 (401)
T ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333333345677889999988999999998899999999999999887654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.6e-07 Score=95.19 Aligned_cols=123 Identities=13% Similarity=0.006 Sum_probs=89.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKD-YPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
+|+|+.+.|.+.....++..++.++.|++.|| +|+|+.+.++.++.++..+.. .+ .+..........+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~-~~---------~~~~~~~~~~~~l~ 112 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML-AM---------SIYPDLIFYGLGTI 112 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH-Hh---------cccHhHHHHHHHHH
Confidence 78999999999888889999999999999999 799999988887777654321 11 11111111112223
Q ss_pred HHHHHhhhhHHHHHHHhhCCCC---hhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSG---IEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~---~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+...+.......+++++.+|++ .|++.+++.....|+|..+||.++|.+.+..|
T Consensus 113 g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 113 AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333334457788888765 38889999999999999999999999988655
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.3e-07 Score=92.62 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=93.6
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVS 148 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (499)
..++++++.+|.++...++......++..+ .|+++.++||+ ++|+.+.++.++..++.+.+.+.+....+....
T Consensus 250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-----g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 324 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-----GKKNTFLIGALLGTCGYLLFFWVSVWSLPVALV 324 (448)
T ss_pred hheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 445677777887766555544333454444 88999999997 566677777777777766666544222222333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhccCCC-----CcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 149 ALTASSAGIAIADVTIDACVAQNSICHP-----SLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv~e~~~~~~-----~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
..++.++|.+...+...++..|..+.++ +++|...+..+....+|..+|+.+.+.+.+..|+
T Consensus 325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556778888888888888888775321 2458888999999999999999999888765554
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=92.34 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=89.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.+..+.+++.....++...+.+..|++.||+|+|+.+..+.++.++..+.. .. .++....+..-.+.+
T Consensus 36 l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~-~~---------a~~~~~li~~r~l~G 105 (495)
T PRK14995 36 LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA-AF---------SPTASWLIATRALLA 105 (495)
T ss_pred hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HH---------cCCHHHHHHHHHHHH
Confidence 78888888998888888888888999999999999999998877776654321 11 122222222333445
Q ss_pred HHHHhhhhHHHHHHHhh-CCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRL-CPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~-~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+..+.........+.+. .|+++|++.+|+.....++|..+||.++|.+.+..|
T Consensus 106 ~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 106 IGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 44444333334445454 577899999999999999999999999999998765
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=86.03 Aligned_cols=140 Identities=13% Similarity=0.049 Sum_probs=94.7
Q ss_pred hhhHHHHhhh--ccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 68 RVGTQYYMKD--VQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 68 ~~~~~~~l~~--~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
..+.+.|+++ .+|+++++.+...+.+..+..+ ..+.++++||+ ++|+.+.++..+.+++..+....++...
T Consensus 160 ~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-----g~~~~l~~~~~l~~~~~~l~~~~~~~~~- 233 (310)
T TIGR01272 160 GSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-----SQGRYLAFNAFLAVLLSIGAALTHGYVA- 233 (310)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHcCCHHH-
Confidence 3344556764 3699999999998888888877 67899999997 3444666666666665544444443221
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTI 219 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~ 219 (499)
....++.+++.+...+...++..+..+ ++.+...++. ....+|..++|++.|.+.+..|.+..|++..+
T Consensus 234 --~~~~~l~g~~~s~i~P~~~s~a~~~~~---~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 234 --MWFVLALGLFNSIMFPTIFSLALNALG---RHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 123345677777777666666655433 2344555654 56678999999999999999898888875433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=94.55 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=94.0
Q ss_pred hHHHHhhhccCCChhHHHHHHHhh-hchhhhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH------
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGIT-SLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH------ 142 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~-~l~~~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~------ 142 (499)
..+||++ ..|++....+.+-.+. ..|..++|+.|..|||-+.+..||||++..+.+...++.+++.++++..
T Consensus 54 y~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~ 132 (498)
T KOG0637|consen 54 YLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN 132 (498)
T ss_pred cccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC
Confidence 4456765 6899888777655443 4455679999999999987777999999999999999988888765432
Q ss_pred ---------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHHHHHHHHHhHh
Q 041017 143 ---------LVFAVSALTASSAGIAIADVTIDACVAQNSICHP-SLASDMQSLCSLCSAIGALIGYSISGIF 204 (499)
Q Consensus 143 ---------~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~-~~rg~~~~~~~~~~~~G~~lg~~l~g~l 204 (499)
....++...+.-+..-..+.+..+++.|+.+.+. ++| +++.......+|..+|..++++.
T Consensus 133 ~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~--Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 133 ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR--ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc--cchhHHHHHHhcceeeeeccccc
Confidence 1122233334445555566677889999986533 233 77888888899999998887743
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.4e-07 Score=75.35 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHH
Q 041017 310 GPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLS 389 (499)
Q Consensus 310 ~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 389 (499)
..++.+++....+++.||+++|+.+..+.....+..+.. .. .++.........+.++..+........+.
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-AL---------SSNITVLIIARFLQGFGAAFALVAGAALI 76 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHH-HH---------hccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456778888899999999999998887766655543211 11 11222222223344444444444456788
Q ss_pred HhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 390 SRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 390 ~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
.|..|++.+++.++..+...++|..++|.+++.+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 115 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG 115 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence 899999999999999999999999999999998886543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-06 Score=100.26 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=100.8
Q ss_pred hhhHHHHhhhccCCChh-HHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHH
Q 041017 68 RVGTQYYMKDVQKVQPS-EAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVF 145 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~-~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 145 (499)
....++++++.+|.+.. +.|++.+...++.++ .++.|.++||+ +++..+.++.++.+++.+.+.+.++...
T Consensus 252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 324 (1146)
T PRK08633 252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-----IELGLVPLGALGLALSLFLLPTAPSLAS-- 324 (1146)
T ss_pred HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eEccchhHHHHHHHHHHHHHHHhhhHHH--
Confidence 34556677788999999 999998888888776 78899999986 3444565666666666666666555443
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc-ccChhHHHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH-LIGPKGVFGLMTI 219 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~-~~gw~~~f~~~a~ 219 (499)
.++..++.+++.+...+...+++.+..+ ++.||+++++.++...+|.++++.+++.+.. .+++...|++.+.
T Consensus 325 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 325 VLVLFFLFGFSAGLFIVPLNALIQFRAP--EKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhcCC--ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 2334456677777666667777777663 4689999999999999999888877766543 2355555555443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-06 Score=89.44 Aligned_cols=139 Identities=15% Similarity=0.032 Sum_probs=95.4
Q ss_pred HHH-hhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHH
Q 041017 72 QYY-MKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSA 149 (499)
Q Consensus 72 ~~~-l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (499)
+.| +++.+|+|+.+.+.....+.++..+ .++.|+++||+ +||+.+..+..+.++.+....+.++... +..
T Consensus 282 ~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~ 353 (438)
T PRK10133 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGGHVG---LIA 353 (438)
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHcCChHH---HHH
Confidence 344 4567899999999999988888877 78899999997 5555666666665555544444444321 233
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhHHHHHHHHHHH
Q 041017 150 LTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKGVFGLMTIPAG 222 (499)
Q Consensus 150 ~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~~~a~~~~ 222 (499)
..+.+++.+...+...+...+..+ ++.+...++..+ ..+|..++|++.|.+.+..| -|..|++..+..+
T Consensus 354 ~~l~glg~~~i~P~~~s~a~~~~~---~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 354 LTLCSAFMSIQYPTIFSLGIKNLG---QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc---hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 456778888777777776666543 334555666553 44678888899999999887 6778876444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-06 Score=87.18 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=107.4
Q ss_pred cchhhhhhhhHHHHhhhccC-CChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc
Q 041017 61 GLGGALARVGTQYYMKDVQK-VQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH 138 (499)
Q Consensus 61 g~~~~~~~~~~~~~l~~~~g-~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~ 138 (499)
+...+.+....+.|+++ .| .+....+...++..+.-+. -.+.+.+..|+ +-|+.++++.+..++=..++++.
T Consensus 220 ~~~~~~~~~f~~~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-----g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-----GIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred HHHHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455555667774 55 7777778766665555443 33456677665 56677888888877777777776
Q ss_pred -cchHHHHH--HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHH-HHHHHHHHHHHHhHhhcccChhHH-
Q 041017 139 -EKLHLVFA--VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLC-SAIGALIGYSISGIFVHLIGPKGV- 213 (499)
Q Consensus 139 -~~~~~~~~--~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~-~~~G~~lg~~l~g~l~~~~gw~~~- 213 (499)
++.+.... +..-.++|+..+...+....++.+..| ++.|++.|+++... ..+|..+|..++|++.+++|-+..
T Consensus 294 ~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p--~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 294 SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP--PELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 44332111 111245888888887777777777764 46889999988764 689999999999999998775543
Q ss_pred -----HHHHHHHHHHH-HHHHhcccCC
Q 041017 214 -----FGLMTIPAGLL-ILVGILLNEP 234 (499)
Q Consensus 214 -----f~~~a~~~~~~-~~~~~~~~e~ 234 (499)
+.+.++..++. +++.++.||+
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 33444433333 3344556655
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-07 Score=100.80 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=114.5
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhc--------------c
Q 041017 291 DSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRL--------------N 356 (499)
Q Consensus 291 ~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~--------------~ 356 (499)
..++.++++..+.|++.+...++..++.++.+++.+|.++|+.+.++.++.++..++..+ .+.. +
T Consensus 58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al-phf~~~~y~~~~~~~~~~~ 136 (633)
T TIGR00805 58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL-PHFLSGRYSYSTTVSSTGN 136 (633)
T ss_pred hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC-hHHhcCCcccccccccccc
Confidence 345568899999999988899999999999999999999999998888877776543221 1100 0
Q ss_pred cc-----c---C-----------------C--C-chhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 041017 357 LK-----F---G-----------------I--P-DFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSI 408 (499)
Q Consensus 357 ~~-----~---~-----------------~--~-~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~ 408 (499)
.. . . . . ...+.+..-.+.++..+..+....+++.|..|++.++.+.|+.+..
T Consensus 137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~ 216 (633)
T TIGR00805 137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI 216 (633)
T ss_pred ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence 00 0 0 0 0 0112222333444443333333457889999999999999999999
Q ss_pred HhhHHHhHHHHHHHHHHHhC-----------CcccCCC--h-hHHHHHHHHhHhHHHHHHHhhcCCCCCC
Q 041017 409 DNAGVLSSSWGGGLLLHILK-----------VTRTQFH--N-LWLAILIRNILRITPLCVIFLVPRGDPD 464 (499)
Q Consensus 409 ~~lg~~ig~~l~g~l~~~~g-----------~~~~~~~--~-~~~~~~i~~~~~li~l~~~~~lp~~~~~ 464 (499)
..+|..+|+.++|.+.+.+. +++.+.. + .|..+++.+++.++..+.++++|++.++
T Consensus 217 ~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~ 286 (633)
T TIGR00805 217 AVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPK 286 (633)
T ss_pred HHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 99999999999999987542 1222222 1 3444666666655555555677776554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=87.53 Aligned_cols=125 Identities=13% Similarity=0.018 Sum_probs=94.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
++|.|+.+.|++.....++..++++..+++.||+|+|+.+..+.++.++..+....... .++....+....+.
T Consensus 32 ~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-------~~~~~~~l~~~~l~ 104 (410)
T TIGR00885 32 AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-------IMNYTLFLVGLFIL 104 (410)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-------hccHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999988877765432111000 11222222233444
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHH
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~ 426 (499)
+...+....+...++.+..|++.+++..++.+.+.++|..++|.+++.+...
T Consensus 105 G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 105 TAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555567788889999999999999999999999999999988643
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.3e-06 Score=83.55 Aligned_cols=124 Identities=16% Similarity=0.042 Sum_probs=80.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CchhHH-HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDY-----PFQDVL-FWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVI 369 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~-----~~r~~l-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 369 (499)
.|+|.++.|+..... +...+ .++.+++.||+ |+||.+ ..+.+..++.... +.+... ....+....
T Consensus 18 ~g~s~~~~g~~~~~~-~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~-l~~~~~------~~~l~~l~~ 88 (356)
T TIGR00901 18 KNVSLKTIGFFSLVG-LPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI-LSFLVP------STDLPLLAG 88 (356)
T ss_pred cCCCHHHHHHHHHHH-HHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH-HHcCCc------chhHHHHHH
Confidence 789999999886442 22222 66777777776 787864 4444444443211 111110 112222222
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 370 DEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 370 ~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
...+.+.+......+..+++.|..|+++|+.+.|+.+...++|..+++.+++.+.+..|
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 22333444555556667889999999999999999999999999999999999888776
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-06 Score=98.81 Aligned_cols=145 Identities=12% Similarity=0.003 Sum_probs=100.5
Q ss_pred hhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc-------
Q 041017 67 ARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH------- 138 (499)
Q Consensus 67 ~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~------- 138 (499)
.....+.|+++.+|.++.+.|++.+...++.++ +++.|.++|+. .+++.+..+.++.+++.+.+++.
T Consensus 244 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (1140)
T PRK06814 244 VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-----ITLLYVPIGALLMGLFGLDLAFASSSVPAE 318 (1140)
T ss_pred HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeeeeehHHHHHHHHHHHHHHhcccccccc
Confidence 334566788888999999999999999888877 78899999864 22233333333333333333332
Q ss_pred -------------cchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh
Q 041017 139 -------------EKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV 205 (499)
Q Consensus 139 -------------~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~ 205 (499)
++.+ .+.+..++.+++.+...+...+++.+.++ ++.||+++|..++...+|..++++++|.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 319 PAQLKSILVFLSKRHGW--RILIDLFGLAAAGGLYIVPLFAALQAWAN--PAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred cccccchhhhhcccccH--HHHHHHHHHHHHHHHhHHHHHHHHHhhCC--cccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 2322 22334456677777777777888887764 478999999999999999999999998887
Q ss_pred c-ccChhHHHHHHHHH
Q 041017 206 H-LIGPKGVFGLMTIP 220 (499)
Q Consensus 206 ~-~~gw~~~f~~~a~~ 220 (499)
+ ..+++..+++.++.
T Consensus 395 ~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 395 ALGFSIPWIILFIALA 410 (1140)
T ss_pred HhccCHHHHHHHHHHH
Confidence 4 45677666654443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-06 Score=82.23 Aligned_cols=177 Identities=14% Similarity=0.073 Sum_probs=117.4
Q ss_pred ccccccHHHHHHHHhhhccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhh
Q 041017 27 CGCLWTPIYWIKMLATEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGL 105 (499)
Q Consensus 27 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~ 105 (499)
.++.+||..|.-.++-.+.. +.....-.+.|.++. |.|+|+.+.|...++..+.... ..+.-.
T Consensus 202 ~~vw~~~~aW~vtLfmGlqS---------------~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~ 265 (395)
T COG2807 202 RKVWRSPLAWQVTLFMGLQS---------------LLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPL 265 (395)
T ss_pred cccccCchhHHHHHHHHhhH---------------HHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45677888885554444222 111122234555555 6799999999998887766543 445555
Q ss_pred hccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHH
Q 041017 106 LTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSL 185 (499)
Q Consensus 106 lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~ 185 (499)
+.+|. ..+|+..+.....+.++.+.+.+.|....... .++.|+|.+...+..-.++.+.++ ++++.++..++
T Consensus 266 la~R~----~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~-~a~~Aa~LSgm 337 (395)
T COG2807 266 LARRS----KNQRPLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGLGQGGAFPLALTLILLRSS-DAAIAAALSGM 337 (395)
T ss_pred HHHHh----cccchHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhCccchHHHHHHHHHHhhcC-ChHHHHHHHHH
Confidence 66664 36778777777777778777777766543222 366788877777777777777664 45677777887
Q ss_pred HHHHHHHHHHHHHHHHhHhhccc-ChhHHHHHHHHHHHHHHHH
Q 041017 186 CSLCSAIGALIGYSISGIFVHLI-GPKGVFGLMTIPAGLLILV 227 (499)
Q Consensus 186 ~~~~~~~G~~lg~~l~g~l~~~~-gw~~~f~~~a~~~~~~~~~ 227 (499)
.+....+=..+||.+.|++-|.. +|+......+...+...+.
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 76666666667899999998865 6887777666655555444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-06 Score=91.60 Aligned_cols=124 Identities=14% Similarity=-0.012 Sum_probs=85.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKD-YPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
+|+++.+.+++.........+...+.|++.|| +|+||.+.++.++.++..+... +.. + +...+. ....+.
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~-~~~--~-----~~~ll~-~~~~l~ 115 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG-MSL--L-----KPDLIF-IALGTI 115 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-Hhc--c-----chhHHH-HHHHHH
Confidence 78888887776665555555556688999999 9999999999888777554321 110 0 111111 122233
Q ss_pred HHHHHhhhhHHHHHHHhhCCCC--hhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSG--IEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~--~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+...+.......+++.|.+|++ +++..++++....|+|..+||.++|++.+..|
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g 171 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG 171 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3434443334467889999877 45778999999999999999999999998765
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-06 Score=87.02 Aligned_cols=124 Identities=12% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
++|+|+.+.+++..+..++..++....|++.||+|.|+++.++.++..+..+.....+. + ..++....+....+.
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~--~---~~~s~~~lli~r~l~ 138 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ--N---PNTPFGIFIVIALLC 138 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc--c---cCCCHHHHHHHHHHH
Confidence 48999999999888777777788888899999999999998887776654332111000 0 012222222223333
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLL 424 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~ 424 (499)
++. +..+.+....+++.+|+++||++.|+....+|+|..+++.++..+.
T Consensus 139 Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 139 GFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443 4455666778899999999999999998888998887777666544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=90.11 Aligned_cols=125 Identities=13% Similarity=-0.014 Sum_probs=86.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDY-PFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~-~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
+|+++.+.+.+.........++.++.|++.||+ |+|+.+.++.++.++..+. +.. .. .......++.. +.
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ll-l~~-~~------~~~~~~~l~l~-li 110 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVV-LGA-SE------IHPSFLYLSLA-II 110 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH-HHH-hh------cchhHHHHHHH-HH
Confidence 789999888888777788888889999999998 9999988887776664321 111 00 00111111111 11
Q ss_pred HHHHHhhhhHHHHHHHhhCCCC--hhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCC
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSG--IEGTFFALLMSIDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~--~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
....+.......+++.|.+|++ .|.+.+++.....|+|+.++|.+.|++.+..|+
T Consensus 111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw 167 (493)
T PRK15462 111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW 167 (493)
T ss_pred HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence 1222222222457889999876 689999999999999999999999999887653
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-06 Score=89.27 Aligned_cols=124 Identities=10% Similarity=-0.105 Sum_probs=79.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKD-YPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
+|+|+.+.+.+.............+.|++.|| +|+|+.+..+.++.++..+. ..+.. ...........+.
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l-~~~~~--------~~~~~l~~~~~l~ 122 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL-VAWSG--------HDAGIVYMGMATI 122 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH-HHHhc--------ccHHHHHHHHHHH
Confidence 78888877666554443333444678999999 59999988887776654322 11110 1111111122233
Q ss_pred HHHHHhhhhHHHHHHHhhCCCCh--hHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGI--EGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~--~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+...+.......+++.+.+|++. +...+++++...|+|..+||.++|++.+..|
T Consensus 123 gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g 178 (500)
T PRK09584 123 AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG 178 (500)
T ss_pred HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44444433344578888887643 4457888899999999999999999998765
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-06 Score=88.35 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=105.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhC----CCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCC-----C-ch-
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLK----DYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGI-----P-DF- 364 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~----~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~-~~- 364 (499)
+|.+....+.+..++.+..++..++.|++.| |+||||.+.+.........+..+..........+. . ..
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 7889999999998888999999999999999 59999988775444333322222111110000000 0 00
Q ss_pred -hhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChh--HHHHHHHHHHHhhHHHhHHHHHHHH--HHHhCCcccCC-----
Q 041017 365 -VALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIE--GTFFALLMSIDNAGVLSSSWGGGLL--LHILKVTRTQF----- 434 (499)
Q Consensus 365 -~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~--g~~~gl~~~~~~lg~~ig~~l~g~l--~~~~g~~~~~~----- 434 (499)
++.+....+..+.......|..++++|.+|+++| +.+++..+...++|..+|+.++++. .+.++....+.
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC 193 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence 1222223344566666677888999999998865 5789999999999999999999976 33344332111
Q ss_pred ChhHHHHHHHHhHhHHHHHH-HhhcCCCCC
Q 041017 435 HNLWLAILIRNILRITPLCV-IFLVPRGDP 463 (499)
Q Consensus 435 ~~~~~~~~i~~~~~li~l~~-~~~lp~~~~ 463 (499)
.++...+.+.++..++.... ++..||++.
T Consensus 194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 194 ANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 13344555555554444433 346677653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=84.47 Aligned_cols=152 Identities=13% Similarity=0.213 Sum_probs=110.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
++-+++++|++...-.+..++...+.|.+.+|.|+|..+.++.+++..+.+... . + ....+.+..=.+++
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa---f------g-~sy~~l~vAR~LQg 170 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA---F------G-NSYPMLFVARSLQG 170 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH---H------c-chhHHHHHHHHHhh
Confidence 444667889999999999999999999999999999999998887777543211 1 1 11122223334556
Q ss_pred HHHHhhhhHHHHHHHhhCCCCh-hHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHH
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGI-EGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCV 454 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~-~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~ 454 (499)
...........+++++.+|++. ||+++|..-.+..+|..+||.+||.+.+..|.+.. +++.+++.++..++
T Consensus 171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP--------FlVL~~v~Lld~~L 242 (464)
T KOG3764|consen 171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP--------FLVLAIVLLLDGAL 242 (464)
T ss_pred hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCc--------HHHHHHHHHHHHHH
Confidence 6666666666788999999886 59999999999999999999999999999886532 45555566665555
Q ss_pred Hh-hcCCCCCCC
Q 041017 455 IF-LVPRGDPDT 465 (499)
Q Consensus 455 ~~-~lp~~~~~~ 465 (499)
-+ .++.++.+.
T Consensus 243 ~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 243 QLLVIEPTEMDP 254 (464)
T ss_pred HHheeCccccCc
Confidence 43 555544444
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-06 Score=89.63 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=114.7
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
.+...++.+.+ ..|.+..+.+.+.++..+...+ .++.|+++|+.+ .+++....++.+...++...+.+++++...
T Consensus 316 ~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l 391 (509)
T KOG2504|consen 316 VPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---IRALVLFLLTLLIAGLARLFLPFATTYVGL 391 (509)
T ss_pred HHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---cchHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 44455555655 7899999999999999888776 889999999963 345666677777788787778888887532
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhHHHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKGVFGLMTIPAGL 223 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~~~a~~~~~ 223 (499)
.....+.|+..+.......-.+.|+.. .++-..+.|+......++.++||+++|++.+..| |...|+..++..++
T Consensus 392 --~~~~~~fG~~~g~~~~l~~~i~~~~~g--~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~ 467 (509)
T KOG2504|consen 392 --IVFSILFGFCVGSFSSLTPVILVDLVG--LEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL 467 (509)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHcC--hhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence 233344455555444433345566663 3456778999999999999999999999988776 88888888877666
Q ss_pred HHHHHhccc
Q 041017 224 LILVGILLN 232 (499)
Q Consensus 224 ~~~~~~~~~ 232 (499)
....++..|
T Consensus 468 s~~~~~~~~ 476 (509)
T KOG2504|consen 468 SAVLLLILR 476 (509)
T ss_pred HHHHHHHhH
Confidence 544444444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=90.17 Aligned_cols=137 Identities=22% Similarity=0.245 Sum_probs=98.7
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc--chH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE--KLH 142 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~--~~~ 142 (499)
+.....++|.++.+|.+ ...+.+..+..++..+ .|++++++||+ +||+.+..+..+.+++.+...+.+ +.+
T Consensus 243 ~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-----gk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (428)
T PF13347_consen 243 LMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-----GKKKVYIIGLLLAALGFLLLFFLGPGSPW 316 (428)
T ss_pred hhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-----cceeehhhhHHHHHHHHHHHHHHHhhhHH
Confidence 44445567777777755 5566666666666555 89999999997 556677788888888877777765 444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCC-----CcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 143 LVFAVSALTASSAGIAIADVTIDACVAQNSICHP-----SLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 143 ~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~-----~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
. ..+...+.+++.+...+...++++|..+.++ ++.|...|.......+|..+++.+.+.+.+..|+
T Consensus 317 ~--~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 317 L--VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred H--HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 2 3445567788888887888889988876422 2357778888888999999999988888765443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0002 Score=74.25 Aligned_cols=259 Identities=15% Similarity=0.086 Sum_probs=128.1
Q ss_pred HhhhccCC-----ChhHHHHHHHhhhchhhh--hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc--cchH--
Q 041017 74 YMKDVQKV-----QPSEAQVYAGITSLPWIV--KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH--EKLH-- 142 (499)
Q Consensus 74 ~l~~~~g~-----s~~~~g~~~~~~~l~~~~--~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~--~~~~-- 142 (499)
-++|.+.+ +++.+.++-+...+|..+ .|+.+.+++|+ +|++.+-+....+.....+.++. |+..
T Consensus 28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-----~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~ 102 (472)
T TIGR00769 28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-----SKEALFYTVISPFLGFFALFAFVIYPLSDLL 102 (472)
T ss_pred hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHhHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 35777766 446788888888888764 68999999997 34444444333333333333322 1100
Q ss_pred -------------------------HHHHHHHHHHHH-hHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHH
Q 041017 143 -------------------------LVFAVSALTASS-AGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALI 196 (499)
Q Consensus 143 -------------------------~~~~~~~~~l~~-~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~l 196 (499)
.+.......... ++.-.......+...|..+ ++|..|..++...+.++|.++
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t--~~qakRfy~l~~~ganlg~i~ 180 (472)
T TIGR00769 103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT--IDEAKRFYALFGLGANVALIF 180 (472)
T ss_pred CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 001111111122 2222222356777788874 356778899999999999999
Q ss_pred HHHHHhHhhc-------cc-Chh----HHHHHHHHHHHHHHHHHhcccCCCCCCcc-----hhhhhHHHHHH-HHHHHHH
Q 041017 197 GYSISGIFVH-------LI-GPK----GVFGLMTIPAGLLILVGILLNEPQVPDFN-----YKQVNLKFLDA-GKAMWTT 258 (499)
Q Consensus 197 g~~l~g~l~~-------~~-gw~----~~f~~~a~~~~~~~~~~~~~~e~~~~~~~-----~~~~~~~~~~~-~~~~~~~ 258 (499)
++.+..++.+ .. .|. ..+.+.++...+......++.+....++. .++++++.+.. ......+
T Consensus 181 sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i 260 (472)
T TIGR00769 181 SGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFL 260 (472)
T ss_pred HHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHH
Confidence 9988877763 11 232 23333333333333333333211111000 00000000111 1223456
Q ss_pred ccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCCh----hHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHH
Q 041017 259 LKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQ----ETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVL 334 (499)
Q Consensus 259 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~----~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l 334 (499)
+++|-++...+...+++... +.-. ..|.......+ -|+ ...|.+....++..++...+.+++.+|+|++...
T Consensus 261 ~~S~yL~~ia~~vi~y~~~~-nlve--~~~k~~v~~~~-p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a 336 (472)
T TIGR00769 261 VSSPYILDLALLVIAYGISI-NLVE--VTWKSKLKAQY-PSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAA 336 (472)
T ss_pred HhCHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77887766666655554331 1000 11111110001 122 2234444444445555555559999999998766
Q ss_pred HHHHHHHHH
Q 041017 335 FWAQLLSGL 343 (499)
Q Consensus 335 ~~~~~~~~~ 343 (499)
.+.-++..+
T Consensus 337 ~i~Pii~li 345 (472)
T TIGR00769 337 LITPLVMLL 345 (472)
T ss_pred HHHHHHHHH
Confidence 655444433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=75.69 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=98.7
Q ss_pred HHhhhccCCChhHHHHHHHhhhchhhhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc-----cchHHHHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH-----EKLHLVFAV 147 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~~l~~~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~-----~~~~~~~~~ 147 (499)
+.+|+.+|+|-+|...+.+...++..++.+.|.+.|++ +.+..+++|.+...++...+..+ ++.+.+...
T Consensus 26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~-----gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~ 100 (250)
T PF06813_consen 26 PQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRF-----GPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC 100 (250)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence 46789999999999999888899987899999999986 56677888888888887776653 112222223
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH-HH
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL-IL 226 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~-~~ 226 (499)
...++.+.+.+..+... ++ -..++.|++||.+.++.-....+++.+-..+...+.+. +-..-+.+.++.+.++ ++
T Consensus 101 ~~~~l~~~s~~~~~ta~--lv-t~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 101 LFLFLGGNSSCWFNTAS--LV-TCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHcccHHHhhhHH--HH-HHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHH
Confidence 33445555555444332 22 22244577899999998888888877766555444443 2222233444444333 44
Q ss_pred HHhcccCC
Q 041017 227 VGILLNEP 234 (499)
Q Consensus 227 ~~~~~~e~ 234 (499)
..++++..
T Consensus 177 ~~~~vr~~ 184 (250)
T PF06813_consen 177 AMFFVRPV 184 (250)
T ss_pred Hhhheecc
Confidence 44445433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.8e-05 Score=76.12 Aligned_cols=302 Identities=10% Similarity=0.015 Sum_probs=145.9
Q ss_pred hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcc
Q 041017 100 KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLA 179 (499)
Q Consensus 100 ~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~r 179 (499)
..+.+.+.|.+ +-|..|+++...+.......-+.+++. +...-.+.|+|.++-..-...++.|..++ +++
T Consensus 67 ~l~~psiv~~i-----~~K~~lv~ga~~y~~f~~gfl~~N~y~---~yfssallG~Gaallw~GqG~ylt~~st~--~ti 136 (461)
T KOG3098|consen 67 CLFAPSIVNFL-----GPKWALVIGATCYAAFPLGFLFPNSYY---LYFSSALLGFGAALLWTGQGGYLTSNSTR--ETI 136 (461)
T ss_pred HHhhHHHHHHh-----hHHHHHHHHhHHHHHHHHHHHhcchHH---HHHHHHHhhhhHHheecccceehhhcCCh--hhH
Confidence 66778888987 677888888877776655544433322 23445667888887666555666766643 456
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHhhcc--------cChh-H----------HHHHHHHHHHHH---HHHHhcccCCCCC
Q 041017 180 SDMQSLCSLCSAIGALIGYSISGIFVHL--------IGPK-G----------VFGLMTIPAGLL---ILVGILLNEPQVP 237 (499)
Q Consensus 180 g~~~~~~~~~~~~G~~lg~~l~g~l~~~--------~gw~-~----------~f~~~a~~~~~~---~~~~~~~~e~~~~ 237 (499)
.+..++.+.....+.++|..+...+... .+.+ . ...+.+++..+. ++...+.|.+...
T Consensus 137 e~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~ 216 (461)
T KOG3098|consen 137 ERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVV 216 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchh
Confidence 6667777777777777776544322211 1111 0 111111211111 1112233332222
Q ss_pred CcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccce---eEEecCCCCCCCChhH-HHHHHHHHHHH
Q 041017 238 DFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLF---YWYTDSKAGPSFSQET-VGFVLSVGPVG 313 (499)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~s~~~-~g~~~~~~~i~ 313 (499)
.++... +..+++.++...+++++|+........+..+... +.+...+ +..+. ..+.+... .+......+++
T Consensus 217 ~~~~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~-Sf~~~iypt~i~ft~---~~~~n~~~~~ai~~~~~g~g 291 (461)
T KOG3098|consen 217 NCKSSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLET-SFWISIYPTCISFTR---KLGSNTTYLIAIYSIGIGLG 291 (461)
T ss_pred hhhhhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH-HHHHhccchhhhhhh---hccCcchhHHHHHHHHHhHH
Confidence 111111 1245566677778888888554443333322211 1111100 01111 12333332 34444566777
Q ss_pred HHHHHHHHHHHh---CCCCchhHHHHHHHHHHHHhhhhhhhhhhcc--------cccCCCchhhHHHHHHHHHHHHHhhh
Q 041017 314 SILAAILYQNSL---KDYPFQDVLFWAQLLSGLSGMLDLLLVLRLN--------LKFGIPDFVALVIDEGISRMVGQLKW 382 (499)
Q Consensus 314 ~i~g~~l~~~~~---~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (499)
.+.++...+.+. |++|+++.+.++.++.....+....-.+.-. .....+....+.....+.++.....-
T Consensus 292 ~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~ 371 (461)
T KOG3098|consen 292 EVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFN 371 (461)
T ss_pred HHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHH
Confidence 777777666555 4577888777766665554332211111000 00001122122222223333333322
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHH
Q 041017 383 MPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSS 417 (499)
Q Consensus 383 ~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~ 417 (499)
.-....+.... ++.+.+++++.-.-..+++.++-
T Consensus 372 t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 372 TQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred HHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence 23345666777 45666677766665555554433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=84.18 Aligned_cols=131 Identities=13% Similarity=0.035 Sum_probs=80.5
Q ss_pred HHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc--cchHHHHHHH
Q 041017 72 QYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH--EKLHLVFAVS 148 (499)
Q Consensus 72 ~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~ 148 (499)
.+|.+..++ ++...+.+.....++..+ .|++++++||+ +||+.+..+....++......+. ++.+ ...+
T Consensus 253 ~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----gk~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 324 (444)
T PRK09669 253 LYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-----DRVRAFKWTIVAFVILSALIFFIPPSNVW--LIFA 324 (444)
T ss_pred heeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHH
Confidence 344443333 233334444444455455 67899999997 45555555554444333222222 2332 2233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhccCCC-----CcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 149 ALTASSAGIAIADVTIDACVAQNSICHP-----SLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv~e~~~~~~-----~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
..++.+++.+...+...++++|..+.++ +..|...+..+....+|..+|+.++|.+.+..|+
T Consensus 325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4466788888888888899998875322 1345667888888899999999999998876655
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-05 Score=83.60 Aligned_cols=135 Identities=21% Similarity=0.117 Sum_probs=84.9
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh---ccchHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM---HEKLHLVF 145 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~---~~~~~~~~ 145 (499)
..+++.+...+ ++...+.+.+...++..+ .|++++++||+ +||+.++++..+.+++.+...+ .++.....
T Consensus 253 ~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
T PRK10429 253 FAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-----SRRILWAGASIFPVLSCGVLLLMGLAAPHNALL 326 (473)
T ss_pred heeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence 33445543344 556666666655555554 78899999997 5556666666554544433322 12111112
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCC-----cccchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPS-----LASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~-----~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
.++..++.+++.+...+...+++.|..+.++. ..|...|.......+|..+++.+.|++.+..|+
T Consensus 327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23344556777777777788899988763222 234577888888999999999999998876554
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.8e-06 Score=83.77 Aligned_cols=146 Identities=10% Similarity=0.076 Sum_probs=99.4
Q ss_pred ChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHH
Q 041017 82 QPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIA 160 (499)
Q Consensus 82 s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 160 (499)
+....|.+.++..+.-+. -.+..++.+|+ +-|+.++++..+.++=.++++++++++. ......+.++-.+..
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-----g~k~~Lllag~i~~iRi~~~~~~~~~~~--i~~~klLH~~e~~l~ 329 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRI-----GAKNLLLLAGVIMAIRIIGSGFATNPWV--ISLIKLLHALEFPLL 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHT--SHHH--HHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-----ChHhHHHHHHHHHHHHHHHHhhhcchHH--HHHHHHHHHHHHHHH
Confidence 445566665555444333 33456777886 5667788888888878888999998874 345667788888877
Q ss_pred HHHHHHHHHhhccCCCCcccchHHHH-HHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH-HHHHhcccCCCC
Q 041017 161 DVTIDACVAQNSICHPSLASDMQSLC-SLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL-ILVGILLNEPQV 236 (499)
Q Consensus 161 ~~~~~alv~e~~~~~~~~rg~~~~~~-~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~-~~~~~~~~e~~~ 236 (499)
.+...-++.+..+ ++..++.+.+. +.+..+|..+.+.++|.+.|+.|.+..|++++...+.. ++..+.++++++
T Consensus 330 lva~fkYI~~~fd--~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 330 LVAAFKYITAHFD--KRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHS---GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHhCC--HhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 7776677777653 34455566553 56788999999999999999999999999988876665 444555665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-05 Score=73.45 Aligned_cols=132 Identities=12% Similarity=0.123 Sum_probs=85.2
Q ss_pred HHhhhccCCChhHHHHHHHh-hhchhhhhhHHhhhccccccCCCCcchHHHHHh-HHHHHHHHHHHhc-cchHHHHHHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGI-TSLPWIVKPLWGLLTDVLPIFGYRRRPYFILAG-CLGVFSMLLLSMH-EKLHLVFAVSA 149 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~-~~l~~~~~pl~G~lsD~~~~~g~~Rk~~ll~~~-~~~~~~~~~~~~~-~~~~~~~~~~~ 149 (499)
.+.++.+|+|+.+.+.+.+. +.+.....|+.|.++|++ +|+-+.+.+. +...++=..+.+. -+++ ..
T Consensus 289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-----G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy-----~~ 358 (459)
T KOG4686|consen 289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-----GFNLWWVASACILTLLGHSGLFFTFLSPY-----TS 358 (459)
T ss_pred HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-----cceehhHHHHHHHHHHHhhhHHhhhccHH-----HH
Confidence 35678999999999987765 455556699999999997 5555444433 2222222222221 1111 12
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC---hhHHHHH
Q 041017 150 LTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG---PKGVFGL 216 (499)
Q Consensus 150 ~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g---w~~~f~~ 216 (499)
..+.|+..+........+++-+.++ ++-|++.++.+...++|..+.|+++|.+.++-| |-.+|.+
T Consensus 359 m~~lGLsysllAcslWP~va~~vpE--~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl 426 (459)
T KOG4686|consen 359 MTFLGLSYSLLACSLWPCVASLVPE--EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFL 426 (459)
T ss_pred HHHHhhhHHHHHHHHhhhhhhhCCH--HHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHH
Confidence 3344555544443455566656543 578999999999999999999999999998644 4445544
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-05 Score=82.32 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=114.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
+.+....+++.+..+..++.++|.+..+.+.+|++..+.+..+.++..+..+.... ..+....++.-.+.
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~----------~~s~~~~ialr~ll 144 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA----------VHSFPGLIALRFLL 144 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHH
Confidence 35666678888888889999999999999999999877777766665553321111 11222223334455
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHh-HHHHH
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILR-ITPLC 453 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~-li~l~ 453 (499)
++..+..+.+...++...+.++.+|+.+|++.+..++|.++|++++..+.+.-|.. ...+..+.+++.+++. ..+++
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~--~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG--GLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC--CcCCceeehhHHHHHHHHHHhe
Confidence 66666667777788889999999999999999999999999888877766543321 1222334455555554 44445
Q ss_pred HHhhcCCCCCCCCCCchhhh
Q 041017 454 VIFLVPRGDPDTSFLPAELE 473 (499)
Q Consensus 454 ~~~~lp~~~~~~~~l~~~~~ 473 (499)
..+++|+...+.+.+.++..
T Consensus 223 ~f~~lp~~P~~~~fl~~~ek 242 (495)
T KOG2533|consen 223 VFFFLPDNPSKAWFLTDEEK 242 (495)
T ss_pred EEEEecCChhhccccchHHH
Confidence 55699998887776666653
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00038 Score=65.24 Aligned_cols=304 Identities=13% Similarity=0.090 Sum_probs=138.8
Q ss_pred HHhhhccCCChhHHHHHHHhhhchh-hhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHh---ccchHHHHHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGITSLPW-IVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSM---HEKLHLVFAVS 148 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~~l~~-~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~---~~~~~~~~~~~ 148 (499)
+|+-+.+|....++|.+.-..+-.. .++.+.|.++|+. +||+- .+.+++..+++.. ++.+. .+.+
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-----GRKra----cvtycitYiLsCiTKhSpqYk--VLmV 129 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRA----CVTYCITYILSCITKHSPQYK--VLMV 129 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-----ccccc----eeeehHHHHHHHHhhcCCceE--EEee
Confidence 3555678888889987643332222 3488899999986 34432 2223333333322 33333 3456
Q ss_pred HHHHHHhHHHHHHHHHHHHH-HhhccCCCCcccchHHHH----H----HHHHHHHHHHHHHHhHhhccc--ChhHHHHHH
Q 041017 149 ALTASSAGIAIADVTIDACV-AQNSICHPSLASDMQSLC----S----LCSAIGALIGYSISGIFVHLI--GPKGVFGLM 217 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv-~e~~~~~~~~rg~~~~~~----~----~~~~~G~~lg~~l~g~l~~~~--gw~~~f~~~ 217 (499)
.|.+.|+..+.-.....++. .|.. ++|+.-+-+. . .+..+=.+++.+.+..+.+.+ |.-.+|-..
T Consensus 130 GR~LGGiaTsLLFSaFEsWliaEHn----ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAA 205 (454)
T KOG4332|consen 130 GRVLGGIATSLLFSAFESWLIAEHN----EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAA 205 (454)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhh----hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHH
Confidence 77877777776666666654 4433 3343222111 1 223333344444444555544 344445433
Q ss_pred HHHHHHH-HHHHhcccCCCCCCcchhhhhHHHHHHHHHH-HHHccCcchhhHHHHHhhhhhccccccccceeEEecC-CC
Q 041017 218 TIPAGLL-ILVGILLNEPQVPDFNYKQVNLKFLDAGKAM-WTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDS-KA 294 (499)
Q Consensus 218 a~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 294 (499)
+....+. .+..-.-.|....+.++ +.+..+++.- ..+..|+++...-....+ +-..+..-.+.|.... ++
T Consensus 206 acfLaigmAvil~~W~ENygdps~~----kdlltqf~gaa~aiaSD~ki~LLG~iqsL---FE~smytFVFLWTPaLspn 278 (454)
T KOG4332|consen 206 ACFLAIGMAVILSSWSENYGDPSEN----KDLLTQFKGAARAIASDEKIALLGAIQSL---FEGSMYTFVFLWTPALSPN 278 (454)
T ss_pred HHHHHHHHHHHHhhhhhccCChhhh----HHHHHHhhHhHHHHhcchHHHHHHHHHHH---HhhhhheeeeeecccCCCC
Confidence 2222222 12221223333222111 1222333322 233455654332222211 1111112223454332 11
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQ--DVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEG 372 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r--~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 372 (499)
.-+. --|.+......++++|+-++.|+..|...| ..+.+..++.....+..+ +.......-.-+. ..+...+
T Consensus 279 ~e~i---PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpi-lt~~vsP~kes~~--~s~i~F~ 352 (454)
T KOG4332|consen 279 DEEI---PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPI-LTSSVSPSKESPS--ESLIGFC 352 (454)
T ss_pred cccC---CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH-HHhccCCCcCCch--HHHHHHH
Confidence 1111 126777777788899999998887654433 444444444444322221 1111111111111 1122233
Q ss_pred HHHHHHHhhhhHHHHHHHhhCCCChhHHHHHH
Q 041017 373 ISRMVGQLKWMPLLVLSSRLCPSGIEGTFFAL 404 (499)
Q Consensus 373 l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl 404 (499)
+...+-++-+..+.-+=.++.|++.|++.+-+
T Consensus 353 ~~E~cvGlfwPSimkmRsqyIPEearstimNf 384 (454)
T KOG4332|consen 353 LFEACVGLFWPSIMKMRSQYIPEEARSTIMNF 384 (454)
T ss_pred HHHHHHhhcchHHHHHHHhhCCHHHHhhhhhh
Confidence 44455555454444566678898888765443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.8e-05 Score=74.97 Aligned_cols=167 Identities=11% Similarity=0.120 Sum_probs=109.8
Q ss_pred HhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHH
Q 041017 56 YGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLL 134 (499)
Q Consensus 56 ~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~ 134 (499)
..+.+|++. +..... .|-++++|++.+++.++.....+..++ ..++|++.||+ +-|+.+..+.++..+.++.
T Consensus 262 ~~~~DGv~t-il~~~~-~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-----g~k~vl~~~lvi~~~~~~~ 334 (438)
T COG2270 262 FFYIDGVNT-ILAMGG-VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-----GSKPVLMIGLVILSIAALY 334 (438)
T ss_pred HHHHhhHHH-HHHHHH-HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCceeehHHHHHHHHHHHH
Confidence 335677763 344443 356679999999999887666666555 77899999998 3446666666665554443
Q ss_pred HHhc-cchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhH
Q 041017 135 LSMH-EKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKG 212 (499)
Q Consensus 135 ~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~ 212 (499)
.-+. ++... .+..++.++..+..+....++.+++.|+ ++.++..|+++...-.++.+||.+.+.+.+..| -|.
T Consensus 335 ~~~~~~~~~f---~i~gll~g~s~G~~qA~SRSy~~~lvp~--~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~ 409 (438)
T COG2270 335 LIFLEGELDF---WILGLLVGTSLGGAQASSRSYLARLVPK--GKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRA 409 (438)
T ss_pred HHHccccHHH---HHHHHHHHHhcchHHHHHHHHHHHhCCC--ccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhh
Confidence 3332 22222 2233445666666777889999999864 456777899999999999999999988887543 454
Q ss_pred HHHHHHHHHHHHHHHHhcccCC
Q 041017 213 VFGLMTIPAGLLILVGILLNEP 234 (499)
Q Consensus 213 ~f~~~a~~~~~~~~~~~~~~e~ 234 (499)
-+....++..+-.+....+|++
T Consensus 410 g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 410 GVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHhhHhhEEeecCC
Confidence 4444444443334455566665
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.4e-05 Score=82.07 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=101.0
Q ss_pred hhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc----------cchHHH
Q 041017 76 KDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH----------EKLHLV 144 (499)
Q Consensus 76 ~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~----------~~~~~~ 144 (499)
.+.+|.++.+.|.+.....++..+ ..+.+.+.+|+ +.|+.+.++.++.+++....... ++..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-----~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~-- 352 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-----PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV-- 352 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee--
Confidence 457899999999998887777665 66778887775 56667777777766655433211 1211
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-----hhHHHHH---
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-----PKGVFGL--- 216 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-----w~~~f~~--- 216 (499)
.......+.+++.+...++...++.+..+ ++.+|..+++.+...++|..+++.++|.+.+..| ++..+..
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p--~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i 430 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCP--SGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILG 430 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCC--CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHH
Confidence 11223355667777777777788888774 4678999999999999999999999999988766 4433322
Q ss_pred HHHHHHHHHHHHhcccC
Q 041017 217 MTIPAGLLILVGILLNE 233 (499)
Q Consensus 217 ~a~~~~~~~~~~~~~~e 233 (499)
..+..++.+.+.+++|+
T Consensus 431 ~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 431 HSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 23333333444457885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.001 Score=67.24 Aligned_cols=304 Identities=16% Similarity=0.141 Sum_probs=152.0
Q ss_pred hhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 041017 93 TSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQN 171 (499)
Q Consensus 93 ~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~ 171 (499)
-.+|..+ +.+.-++.+|+| +++| ++.+..+.+++.+..+++++.+.- +....+.+++.+..++..-++..-.
T Consensus 68 di~P~l~~Kl~aP~fi~~v~---y~~R--i~~~~~l~~~g~l~va~~~~v~~~--l~Gv~las~ssg~GE~tfL~lt~~y 140 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRVP---YWIR--ILICVALSAAGMLLVAFSPSVWVR--LLGVVLASLSSGLGEVTFLSLTHFY 140 (402)
T ss_pred HHHHHHHHHHHhHhhhhhcc---chHH--HHHHHHHHHHHHhheeeccchhHH--HHHHHHHhhhhhhhHHHHHHHHHhc
Confidence 3456554 777777788885 4555 334556677788888888887532 3455677888888877766654422
Q ss_pred ccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc-ccChhHHHHHHHHHHHHHHHH-HhcccCCCCCC--cc--h----
Q 041017 172 SICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH-LIGPKGVFGLMTIPAGLLILV-GILLNEPQVPD--FN--Y---- 241 (499)
Q Consensus 172 ~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~-~~gw~~~f~~~a~~~~~~~~~-~~~~~e~~~~~--~~--~---- 241 (499)
++ ...+.+..+.+.++++|+..-..+.+ .++.|..+.+..+.+++..+. ++.+|+++... ++ .
T Consensus 141 ----~~---~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~ 213 (402)
T PF02487_consen 141 ----GK---SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEA 213 (402)
T ss_pred ----Cc---cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcc
Confidence 21 22444555667777777765544444 345577777776666555443 33444322111 00 0
Q ss_pred hh----hh-------HHHHHHHHHHHHHccCcc-hhhHHHHHhhh-hhccccccccceeEEecCCCCCCCChhHHHHHHH
Q 041017 242 KQ----VN-------LKFLDAGKAMWTTLKFPL-VWRPCLYMYLS-FAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLS 308 (499)
Q Consensus 242 ~~----~~-------~~~~~~~~~~~~~l~~~~-~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 308 (499)
++ .+ ...+...++-++.+|.-. ....+....+. .....+....+ .| ... .... ..++-++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl-~f-p~~--~~~~-r~~Y~~Y~~ 288 (402)
T PF02487_consen 214 EDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTL-LF-PNS--FFSP-RDQYRWYQL 288 (402)
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHh-cC-Ccc--CCCH-HHHHHHHHH
Confidence 00 00 000111111112111100 11111111111 11111111111 11 111 0111 245556666
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHH
Q 041017 309 VGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVL 388 (499)
Q Consensus 309 ~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~ 388 (499)
.+.+|.+++. -...-++.|++.+.+.+-..-. ..+.+ ..|- ..+|..+.++......+.++|..++.....
T Consensus 289 ~YQ~GVFISR----SS~~~~rir~lwils~LQ~~nl--~~~~l-~s~~--~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 289 LYQLGVFISR----SSLPFFRIRRLWILSLLQVINL--VFLLL-QSWY--RFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHhhhh----cceeeeehhhHHHHHHHHHHHH--HHHHH-HHHH--HHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6665555543 2222233455554433322211 11111 1111 114555555555667788888888877777
Q ss_pred HHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 041017 389 SSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLL 424 (499)
Q Consensus 389 ~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~ 424 (499)
+.+..|+++|--.+|..+....+|..++..++-.+-
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 788888888888888888888888777776655443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.3e-05 Score=79.62 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=85.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
.+.+.....+..++..+|.++|+++.|.+.||+|||+++.++.++..+..+.. .+ .++....+..=.+.+
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~-a~---------a~~~~~~~~~Rfl~G 182 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT-AF---------APNYWMFLIFRFLSG 182 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH-HH---------hCcHHHHHHHHHHHH
Confidence 45555666677788899999999999999999999999999988877765321 11 223333333333444
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
+...........+.+|..+++.|+.+..+ ..+...+..+++..++++..
T Consensus 183 ~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 183 FFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred hhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 44444444456788999999999999888 77777777778888887776
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00027 Score=73.99 Aligned_cols=135 Identities=10% Similarity=-0.001 Sum_probs=72.2
Q ss_pred hHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHH
Q 041017 70 GTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVS 148 (499)
Q Consensus 70 ~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (499)
...+|.+..+| ++...+.+.+.+.++.++ .+++++++||+ +||..+..+.....+......+.++........
T Consensus 250 ~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~-----gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (460)
T PRK11462 250 AMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWK-----CKVTIFWWTNALLAVISLAMFFVPMQASITMFV 323 (460)
T ss_pred HhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 33444443444 333445555555666555 67899999997 344443333332222222222322221111122
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhccCC---CCcc--cchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 149 ALTASSAGIAIADVTIDACVAQNSICH---PSLA--SDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 149 ~~~l~~~g~~~~~~~~~alv~e~~~~~---~~~r--g~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
..++.+++.+...+...+++.|..+.+ ..+| |...+.......+|..+|+.++|.+++..|+
T Consensus 324 ~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 324 FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334455666555555677777776521 1233 3334666677889999999998888765443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-06 Score=88.38 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=91.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh-HHHHHH
Q 041017 294 AGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVA-LVIDEG 372 (499)
Q Consensus 294 ~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~ 372 (499)
+-+|.+++..|++..+-.+...+++++.|+++||++|++++.++..+..++.+..-. ...++ ++..=.
T Consensus 61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~f-----------s~~Fwq~~l~R~ 129 (493)
T KOG1330|consen 61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGF-----------SNHFWQVLLCRG 129 (493)
T ss_pred HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 337888888899998889999999999999999999999998888877765432111 11121 111111
Q ss_pred HHHHHHHhhhhHH-HHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 373 ISRMVGQLKWMPL-LVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 373 l~~~~~~~~~~p~-~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+. ..+...+.|. .+++++.+|.++|++.+++++.+..+|..+|-..++.+.+..+
T Consensus 130 ~v-GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 130 FV-GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred Hh-ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 11 2233344454 5889999999999999999999999999999888888877654
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.6e-05 Score=80.05 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=76.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
.+|+|..+.+.+..++.... ...++.|++.||+|+|+++.++.+...+..+... +.... .. .++.+.......+.
T Consensus 56 ~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~a-la~~~--~i-~~s~~~l~l~r~l~ 130 (591)
T PTZ00207 56 RYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFA-LTFQE--VI-EGSVVRLSVYNGLM 130 (591)
T ss_pred HhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHhcc--cc-cCcHHHHHHHHHHH
Confidence 38899988888765533222 3445679999999999999998888777654321 11000 00 12222222223344
Q ss_pred HHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHh-HHHHHHHHH
Q 041017 375 RMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLS-SSWGGGLLL 424 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~i-g~~l~g~l~ 424 (499)
+...+....+....+.+.+| +.||++.|+......+|..+ ++...+++.
T Consensus 131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444556677886 67899999999999999875 555555543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=75.51 Aligned_cols=140 Identities=20% Similarity=0.166 Sum_probs=98.2
Q ss_pred hhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHH
Q 041017 65 ALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHL 143 (499)
Q Consensus 65 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~ 143 (499)
.+......+|.+..+|-+..+..........+... .+++..+++|+ +||+.+.++.++.+++.++..+.+....
T Consensus 253 ~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-----gkk~~~~~~~~~~~i~~~~~~f~~~~~~ 327 (467)
T COG2211 253 NIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-----GKKKLFLIGLLLLAVGYLLLYFTPAGSV 327 (467)
T ss_pred HHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence 35555666676656665655665555555555555 67899999987 6777788888888888888877763333
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCC---C--CcccchHHHHHHHHHHHHHHHHHHHhHhhcccC
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICH---P--SLASDMQSLCSLCSAIGALIGYSISGIFVHLIG 209 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~---~--~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g 209 (499)
.+.++...+.++|.+...+.-.++++|..+.+ . +..|...+......-+|..++..+.|++.+..|
T Consensus 328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455567788899888888899998876521 1 233666777777888899998888888876544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=79.56 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=105.2
Q ss_pred HHhhhccCCChhHHHHHHHhh-hchhhhhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccch------HHHH
Q 041017 73 YYMKDVQKVQPSEAQVYAGIT-SLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKL------HLVF 145 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~-~l~~~~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~------~~~~ 145 (499)
.|+.+.+|.+.+++..+...+ .+.+.+..+.|.++|+. .+|++.++++.++..++..++++.... ....
T Consensus 12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~----lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW----LGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 355667898888777666554 44455566799999985 578888888888888887777664211 1112
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCC-CCcccchHHHHHHHHHHHHHHHHHHHhHhhcc-------cChhHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICH-PSLASDMQSLCSLCSAIGALIGYSISGIFVHL-------IGPKGVFGLM 217 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~-~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~-------~gw~~~f~~~ 217 (499)
.+.++.+.+.|.+..-+...+...|..+++ +++|-....+.+.+.++|+.+++++.+++.+. .+|...|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 234455667777777677778888876532 23567778888899999999999998888643 3698899887
Q ss_pred HHHHHHHHH
Q 041017 218 TIPAGLLIL 226 (499)
Q Consensus 218 a~~~~~~~~ 226 (499)
++..++.++
T Consensus 168 ~i~m~ia~l 176 (654)
T TIGR00926 168 AILMILALI 176 (654)
T ss_pred HHHHHHHHH
Confidence 776665533
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=72.76 Aligned_cols=123 Identities=10% Similarity=-0.033 Sum_probs=86.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
++++..+.+.+......+..+++...+++.||+++|+.+.++..++++...+. .+..+ ..+..+.++...+.+
T Consensus 43 f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF---~pAa~----~~~y~~FL~~lFila 115 (422)
T COG0738 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF---WPAAS----SKSYGFFLVALFILA 115 (422)
T ss_pred hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH---hhhhh----hhhHHHHHHHHHHHH
Confidence 78889999999988889999999999999999999999999988888754321 11111 111112222111111
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
..-+..-.....+++.+-|++....-+.+...+..+|++++|.+++.+..
T Consensus 116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 11112122234567778888888888999999999999999999998887
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00016 Score=76.92 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHh
Q 041017 301 ETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQL 380 (499)
Q Consensus 301 ~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (499)
.+.+++.+...++..+|.++.+++.|++|||+.+.++.+...+..++... .++.......-.+.++..+.
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~----------a~~~~~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL----------APSWYQLIVGRILTGLGVGG 158 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhccchhh
Confidence 34578888899999999999999999999999999988877775543211 11223333334455555565
Q ss_pred hhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHhhcCC
Q 041017 381 KWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIFLVPR 460 (499)
Q Consensus 381 ~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~~lp~ 460 (499)
.......+.+|++|++.||...+..+....+|..++ .+.+...... . .+....+.+..+.+++..+.++++||
T Consensus 159 ~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~-----~-~~Wr~~~~~~~i~~~~~~~~~~~~pe 231 (513)
T KOG0254|consen 159 ASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV-----Y-AGWRIPLGLALIPAVILALGMLFLPE 231 (513)
T ss_pred hhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC-----C-ccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 555666889999999999999998888888877776 3333222211 0 01122333333344443444668886
Q ss_pred CCC
Q 041017 461 GDP 463 (499)
Q Consensus 461 ~~~ 463 (499)
+.+
T Consensus 232 sp~ 234 (513)
T KOG0254|consen 232 SPR 234 (513)
T ss_pred ChH
Confidence 643
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.002 Score=64.64 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=108.7
Q ss_pred hhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhhhh-HHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc---cc
Q 041017 65 ALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIVKP-LWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH---EK 140 (499)
Q Consensus 65 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~~p-l~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~---~~ 140 (499)
+.....+.||=.+.+|+|..|...+.+....+..++. +.|.+..| |.++|+...+++..+.++..+..++ .+
T Consensus 225 ~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~----~~~~~~~a~~G~~~~~~~f~lii~a~~~~~ 300 (403)
T PF03209_consen 225 FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR----RLGKKRTAALGCLLGALAFALIILAGPLGS 300 (403)
T ss_pred HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4667777889889999999999998888887776655 46777774 2355556667777777766554443 33
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcc----------cCh
Q 041017 141 LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL----------IGP 210 (499)
Q Consensus 141 ~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~----------~gw 210 (499)
.+ .+-...++.|++.+...+..-++..+++. +++.|..+|.+..+..++..+|..++|.+.|. .+|
T Consensus 301 ~~--~~~~~~~l~G~g~G~f~vgals~mM~lt~--~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY 376 (403)
T PF03209_consen 301 PW--LFRPGVFLLGLGNGLFTVGALSLMMDLTS--AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAY 376 (403)
T ss_pred ch--HHHHHHHHHHHhhhHHHHHHHHHHHhCCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHH
Confidence 33 23445577888888887777777778774 46788889999988888888888888877652 235
Q ss_pred hHHHHHHHHHHHHH
Q 041017 211 KGVFGLMTIPAGLL 224 (499)
Q Consensus 211 ~~~f~~~a~~~~~~ 224 (499)
..+|.+.++..++.
T Consensus 377 ~~VF~lEa~ll~~a 390 (403)
T PF03209_consen 377 GVVFALEAVLLLAA 390 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 56677766655544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00015 Score=70.99 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=62.1
Q ss_pred HHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchH--HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcc
Q 041017 102 LWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLH--LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLA 179 (499)
Q Consensus 102 l~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~r 179 (499)
+.+++.||+ +||+.|..+.++++++++++..+.+.. ..+.+..++. ...+....+.+..|..|. +.|
T Consensus 400 It~~iverl-----GRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPT--avR 468 (528)
T KOG0253|consen 400 ITGVIVERL-----GRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPT--AVR 468 (528)
T ss_pred HHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccch--hhh
Confidence 578999997 788899999999998887776654332 2222333332 222222344556676532 679
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 041017 180 SDMQSLCSLCSAIGALIGYSIS 201 (499)
Q Consensus 180 g~~~~~~~~~~~~G~~lg~~l~ 201 (499)
+...|....+.-+|+++.|.++
T Consensus 469 atgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 469 ATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hcchhhhhhHHhhhhhhhhHHH
Confidence 9999999999999999999998
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0008 Score=63.89 Aligned_cols=123 Identities=17% Similarity=0.060 Sum_probs=76.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHH
Q 041017 291 DSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVID 370 (499)
Q Consensus 291 ~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 370 (499)
..++.+|+|+++...+.....+|.-+| ++.|.+.|++|.+..+.++.+...+.+........+ ....+..+.....
T Consensus 27 ~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~---~i~~~~~~~~~~~ 102 (250)
T PF06813_consen 27 QLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG---RIPSLPVWLMCLF 102 (250)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC---ccCccchHHHHHH
Confidence 334569999999999888888887765 778999999999999888887777765432221111 0111222222222
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHH
Q 041017 371 EGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSW 418 (499)
Q Consensus 371 ~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~ 418 (499)
..+.+...............+.+| ++||++.|+.-+...+++.+-..
T Consensus 103 ~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 103 LFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred HHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH
Confidence 233322222222222333457787 57999999999988887555333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.66 E-value=1.1e-06 Score=91.64 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=91.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHH
Q 041017 299 SQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVG 378 (499)
Q Consensus 299 s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (499)
+..+.++..+...++.++|+++.+++.||+|||+.+..+.++..+..+... ..+.. .+.......-.+.++..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~-~~~~~------~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA-FAPSY------NNFWMLLIGRFLIGFGI 116 (451)
T ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccc-ccccc------ccccccccccccccccc
Confidence 345567777888999999999999999999999998887777666443211 11100 01122222223344444
Q ss_pred HhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHH-HHHHHHhHhHHHHHHHhh
Q 041017 379 QLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWL-AILIRNILRITPLCVIFL 457 (499)
Q Consensus 379 ~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~-~~~i~~~~~li~l~~~~~ 457 (499)
+........++.|.+|++.||...++.+....+|..++..++-...+..+ ...|. .+.+.++..++.++...+
T Consensus 117 g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~------~~~Wr~~~~~~~~~~l~~~~~~~~ 190 (451)
T PF00083_consen 117 GGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD------NWGWRILLIFGAIPSLLVLLLRFF 190 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccc
Confidence 55555556788999999999998888888777776666555433321111 11222 223333344444445567
Q ss_pred cCCC
Q 041017 458 VPRG 461 (499)
Q Consensus 458 lp~~ 461 (499)
+||+
T Consensus 191 ~pES 194 (451)
T PF00083_consen 191 LPES 194 (451)
T ss_pred cccc
Confidence 8876
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0018 Score=62.15 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=91.4
Q ss_pred ccCCCh--hHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 041017 78 VQKVQP--SEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASS 154 (499)
Q Consensus 78 ~~g~s~--~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 154 (499)
+.+.+. ...++..+...++..+ .++.|.++||. +||+.++.+.....++...+++.++.....+...++..+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 105 (338)
T COG0477 31 TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-----GRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG 105 (338)
T ss_pred HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-----cchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 445454 4778888888888776 57899999996 444555555544444445555555511112344556577
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCcccchHHHHHH-HHHHHHHHHHHHHhHhhcc--cChhHHHHHHHHHH
Q 041017 155 AGIAIADVTIDACVAQNSICHPSLASDMQSLCSL-CSAIGALIGYSISGIFVHL--IGPKGVFGLMTIPA 221 (499)
Q Consensus 155 ~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~-~~~~G~~lg~~l~g~l~~~--~gw~~~f~~~a~~~ 221 (499)
++.+...+...+++.|..++ .++|+...+.... ...+|.++++.+++.+... .+||..|.......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 106 LGGGGLLPVASALLSEWFPE-ATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred hhhHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 78777777788888888643 1367777777777 5778888888777766554 57888666655444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00023 Score=71.82 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=99.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhH-H-HHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVAL-V-IDEGI 373 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~-~-~~~~l 373 (499)
-|+++...+.++.+..+|.+.|.+..|+++|++|||+++....+++.++.. ...+... ...+...+. + +.=.+
T Consensus 79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~-~~~~s~~----~~~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA-LSGLSVG----TTSPLGVMMTLCFFRFL 153 (538)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH-HhccCCC----CCCCcchhhHHHHHHHH
Confidence 456666678888899999999999999999999999999888887777654 2222111 112222221 1 11112
Q ss_pred HHHHHHhhhhHH-HHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC----Cc--ccCCChhHHHHHHHHh
Q 041017 374 SRMVGQLKWMPL-LVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK----VT--RTQFHNLWLAILIRNI 446 (499)
Q Consensus 374 ~~~~~~~~~~p~-~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g----~~--~~~~~~~~~~~~i~~~ 446 (499)
.++..+. =.|+ .+..+|...++.||+..|..-+++.+|...|..++-.+...+. -. ....+.+|......++
T Consensus 154 LGiGIGG-DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~ 232 (538)
T KOG0252|consen 154 LGIGIGG-DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGA 232 (538)
T ss_pred hhccccC-CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Confidence 2222222 2354 4677888999999999888888888887777666665554432 11 1123446776544333
Q ss_pred HhHHHH-HHHhhcCCCCCCC
Q 041017 447 LRITPL-CVIFLVPRGDPDT 465 (499)
Q Consensus 447 ~~li~l-~~~~~lp~~~~~~ 465 (499)
+..+.. ..=...||++..+
T Consensus 233 vpa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 233 VPALLVLYFRLKMPETARYT 252 (538)
T ss_pred HHHHHHHHhhhcCCcchhHH
Confidence 332222 2223667776654
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.078 Score=54.50 Aligned_cols=261 Identities=13% Similarity=0.021 Sum_probs=123.5
Q ss_pred HhhhccCC---ChhHHHHHHHhhhchhhh--hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc---------c
Q 041017 74 YMKDVQKV---QPSEAQVYAGITSLPWIV--KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH---------E 139 (499)
Q Consensus 74 ~l~~~~g~---s~~~~g~~~~~~~l~~~~--~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~---------~ 139 (499)
-++|.+.+ +++.+.++=++..+|.++ .++.+.++++.+ |.+.+-.....+.....++++. +
T Consensus 48 ~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt-----~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp 122 (509)
T COG3202 48 SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILT-----REKVFYIILGFFLGFFALFAFVIYPYKDILHP 122 (509)
T ss_pred HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcC-----HHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 45665543 477788888888888653 888999999863 3333333333333333333331 1
Q ss_pred ch----------H-----------HHHHHHHHHHHH-hHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHH
Q 041017 140 KL----------H-----------LVFAVSALTASS-AGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIG 197 (499)
Q Consensus 140 ~~----------~-----------~~~~~~~~~l~~-~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg 197 (499)
++ + .+.+.....+.- .|.-...-...+...|.++. +|..|..++.+...+++..++
T Consensus 123 ~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~--~eakRFy~lf~l~~ni~llls 200 (509)
T COG3202 123 DPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTI--EEAKRFYPLFGLGANISLLLS 200 (509)
T ss_pred CHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHhhhhHHHHHHHHHHHHHHH
Confidence 10 0 011111111111 11111112334445566543 467778999999999999998
Q ss_pred HHHHhHhhccc-C---------hhHHHHHHHHHHHHHHHHHhcc----cCCCCCC-cc-hhhhhHHHHHHHHH-HHHHcc
Q 041017 198 YSISGIFVHLI-G---------PKGVFGLMTIPAGLLILVGILL----NEPQVPD-FN-YKQVNLKFLDAGKA-MWTTLK 260 (499)
Q Consensus 198 ~~l~g~l~~~~-g---------w~~~f~~~a~~~~~~~~~~~~~----~e~~~~~-~~-~~~~~~~~~~~~~~-~~~~l~ 260 (499)
..+..++..+. . -+..+.+.+....+++....++ .+.+... +. .++++++.+-.+.+ ....+|
T Consensus 201 g~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s~k~i~~ 280 (509)
T COG3202 201 GEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKMILR 280 (509)
T ss_pred HHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHHHHHHHh
Confidence 88887776521 1 2223333333333333333333 2222211 00 01111111111222 233456
Q ss_pred CcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCCh---hHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchhHHHH
Q 041017 261 FPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQ---ETVGFVLSV-GPVGSILAAILYQNSLKDYPFQDVLFW 336 (499)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~---~~~g~~~~~-~~i~~i~g~~l~~~~~~~~~~r~~l~~ 336 (499)
+|-++...+...+++.+. +... ..|.......+.-+. ...|-+... +.+..+....+++.+.+|+|+...-.+
T Consensus 281 SkyL~~ial~vl~Y~v~i-nLvE--~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~Ali 357 (509)
T COG3202 281 SKYLGAIALLVLAYGVSI-NLVE--GVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALI 357 (509)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHH--HHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHH
Confidence 666665555555554431 1101 122211110011111 223333333 333466777888999999998876666
Q ss_pred HHHHHHHH
Q 041017 337 AQLLSGLS 344 (499)
Q Consensus 337 ~~~~~~~~ 344 (499)
.-+++.+.
T Consensus 358 tPiv~lit 365 (509)
T COG3202 358 TPLVMLIT 365 (509)
T ss_pred HHHHHHHH
Confidence 54444443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00045 Score=70.98 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=116.3
Q ss_pred HhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHH
Q 041017 56 YGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLL 134 (499)
Q Consensus 56 ~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~ 134 (499)
..++.|...++....+-.++ ++++-.++-.|........+-++ =++.+.+..++ +|...+..++....+=.+.
T Consensus 379 ~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-----GHv~v~~lgLa~~~~Rf~~ 452 (618)
T KOG3762|consen 379 VAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-----GHVNVMYLGLACNVGRFLY 452 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-----cccceeeehhhHHHHHHHH
Confidence 33444554444444443455 46787778788554455555554 56778999886 5667777888777777888
Q ss_pred HHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHH-HHHHHHHHHHHHhHhhcccChhHH
Q 041017 135 LSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLC-SAIGALIGYSISGIFVHLIGPKGV 213 (499)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~-~~~G~~lg~~l~g~l~~~~gw~~~ 213 (499)
+++..|+|.. +-.=+++++..+..+...-+++....| |+.|..++++.... ..+|-.+|+++||.+.+.+|-|..
T Consensus 453 ~S~L~n~W~v--LPieilqgit~aliWaa~~sY~s~vaP--p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~tt 528 (618)
T KOG3762|consen 453 YSYLQNPWMV--LPIEILQGITHALIWAAIISYASHVAP--PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTT 528 (618)
T ss_pred HHHhcCchhe--eeHHHHHHHHHHHHHHHHHHHHHhhCC--CcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHH
Confidence 8888898753 233466888888888777777777763 57788889887765 588889999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 041017 214 FGLMTIPAGLLIL 226 (499)
Q Consensus 214 f~~~a~~~~~~~~ 226 (499)
|.+.++.+++.++
T Consensus 529 f~~~giAcl~~l~ 541 (618)
T KOG3762|consen 529 FRIFGIACLVTLA 541 (618)
T ss_pred HHHHHHHHHHHHH
Confidence 9998887776643
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.45 E-value=1.8e-05 Score=84.00 Aligned_cols=176 Identities=17% Similarity=0.184 Sum_probs=1.9
Q ss_pred ecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhh--hc----ccc-----
Q 041017 290 TDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVL--RL----NLK----- 358 (499)
Q Consensus 290 ~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~--~~----~~~----- 358 (499)
+..++.++++.++.|++.+..-++.++...+..+++.|..+-|.+..+.+++++..++..+... .. +..
T Consensus 27 ttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~ 106 (539)
T PF03137_consen 27 TTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGN 106 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccc
Confidence 4456779999999999999999999999999999999888888888888888776654221100 00 000
Q ss_pred ------cC-------------------CCchhhHHHHHHHHHHHHHhhhhHHH----HHHHhhCCCChhHHHHHHHHHHH
Q 041017 359 ------FG-------------------IPDFVALVIDEGISRMVGQLKWMPLL----VLSSRLCPSGIEGTFFALLMSID 409 (499)
Q Consensus 359 ------~~-------------------~~~~~~~~~~~~l~~~~~~~~~~p~~----~~~~~~~p~~~~g~~~gl~~~~~ 409 (499)
.- ...........++.++..++...|.+ +++-|.++++..+.+.|+..++.
T Consensus 107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~ 186 (539)
T PF03137_consen 107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMS 186 (539)
T ss_dssp ---------------------------------------------SSS--------------------------------
T ss_pred cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHh
Confidence 00 00000011122344555666666653 56778888888888999988888
Q ss_pred hhHHHhHHHHHHHHHHHh-----------CCccc--CCCh-hHHHHHHHHhHhHHHHHHHhhcCCCCCCC
Q 041017 410 NAGVLSSSWGGGLLLHIL-----------KVTRT--QFHN-LWLAILIRNILRITPLCVIFLVPRGDPDT 465 (499)
Q Consensus 410 ~lg~~ig~~l~g~l~~~~-----------g~~~~--~~~~-~~~~~~i~~~~~li~l~~~~~lp~~~~~~ 465 (499)
.+|-++|=.++|..+..+ ++++. .+-+ .|..+++.+.+.++..+.++.+|++-+..
T Consensus 187 ~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 187 ILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 888888878888777543 11111 2222 46667777766666555556777776655
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=65.97 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=79.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHHhhhhhhhhhhcccccCCCc-hhhHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPF-QDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPD-FVALVIDEGI 373 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~-r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~~~~~~~l 373 (499)
++-+++..|++.....++..++.++.+.+..|.+. |+-+..+.++++++.+..+.+.. .++ ..++. .+
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~-------~~~~~~y~m---L~ 135 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAY-------VPNGVKYLM---LV 135 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHh-------cccchHHHH---HH
Confidence 56677788999888999999999999999988774 56666777777776654323222 222 11111 11
Q ss_pred HHHHHHhh---hhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHH
Q 041017 374 SRMVGQLK---WMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 374 ~~~~~~~~---~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~ 426 (499)
.-++.|++ .....++++...-.+.|.++++..+...-+|.++||.++..+...
T Consensus 136 ~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 136 ARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL 191 (488)
T ss_pred HHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence 22333332 223457777766667788888888887888888888877666543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=61.16 Aligned_cols=148 Identities=17% Similarity=0.354 Sum_probs=80.4
Q ss_pred chhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhc---hhhh--hhHHhhhccccccCCCCcchH
Q 041017 46 WSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSL---PWIV--KPLWGLLTDVLPIFGYRRRPY 120 (499)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l---~~~~--~pl~G~lsD~~~~~g~~Rk~~ 120 (499)
|.-+.++.+.|++..-+..+ -+...++....+.+++..+..- -++-. .+.+ -|.+ .+.|.. |-||.
T Consensus 4 W~~~~~llC~yG~~~e~RPs-eP~~tpyl~gp~~NlT~~~l~~--evyPvwTYSYLv~LvpvF-lLTD~l-----rYKPv 74 (433)
T KOG3810|consen 4 WLKITCLLCLYGFVREFRPS-EPYLTPYLLGPDKNLTEDQLTN--EVYPVWTYSYLVGLVPVF-LLTDYL-----RYKPV 74 (433)
T ss_pred hhhhhhhhhhhhHHHHhCCC-CCccchhccCCCCCccHHHHhc--ccccchhHHHHHHHHHHH-HHhhhh-----hccee
Confidence 43334555667766655432 2334443333566777665431 11111 1112 3333 577875 78888
Q ss_pred HHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHH
Q 041017 121 FILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSI 200 (499)
Q Consensus 121 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l 200 (499)
+++-.+........+-+.++.+....+= +..|... .+.+++.+++=+.. +|+++-++.+....+.-.|...|..+
T Consensus 75 ivlq~ls~v~~w~~lv~g~sV~~mQvlE--~FyG~~t-AaEIAYysYIYs~V--d~~~Yqrvt~y~RaA~L~g~~~g~vl 149 (433)
T KOG3810|consen 75 VVLQALSGVPVWIMLVFGPSVKAMQVLE--FFYGPAT-AAEIAYYSYIYSKV--DPEMYKRVTGYCRAAFLVGKFVGSVL 149 (433)
T ss_pred eeeeccchhHHHHHHHhcCCchheeeeh--hhcChHH-HHHHhhhheeeeec--CHHHHHHHHHHhHHHHHHHhHHHhHH
Confidence 8776665555555555666654221111 1112222 24555666553332 56777888888888888888888877
Q ss_pred HhHhhcc
Q 041017 201 SGIFVHL 207 (499)
Q Consensus 201 ~g~l~~~ 207 (499)
+-.++..
T Consensus 150 aQlLvs~ 156 (433)
T KOG3810|consen 150 AQLLVSL 156 (433)
T ss_pred HHHHhhh
Confidence 7666653
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0045 Score=66.02 Aligned_cols=95 Identities=8% Similarity=0.051 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhh
Q 041017 302 TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLK 381 (499)
Q Consensus 302 ~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (499)
...++.....++..++..+.||+.|.+|||..++.+.++..+..++ ... ..+.--+++...+.++..+..
T Consensus 79 ~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv---~at-------A~~~~~~iag~~l~GvgaG~~ 148 (599)
T PF06609_consen 79 NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIV---CAT-------AQNMNTFIAGMVLYGVGAGVQ 148 (599)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHH---hhc-------CCcHHHHHHHHHHHHHhhHHH
Confidence 3456666677778888889999999999999988887776664332 111 112122233445555544444
Q ss_pred hhHHHHHHHhhCCCChhHHHHHHHHH
Q 041017 382 WMPLLVLSSRLCPSGIEGTFFALLMS 407 (499)
Q Consensus 382 ~~p~~~~~~~~~p~~~~g~~~gl~~~ 407 (499)
.. ....++|+.|.+.|+..+++...
T Consensus 149 ~~-~~~~isEl~p~k~R~~~~~~~~~ 173 (599)
T PF06609_consen 149 EL-AALAISELVPNKWRGLGLAIASI 173 (599)
T ss_pred HH-HHHHHHHhcccchhhhHhHHHHH
Confidence 33 23457899999888776665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.13 Score=53.91 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=30.7
Q ss_pred HHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc
Q 041017 164 IDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH 206 (499)
Q Consensus 164 ~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~ 206 (499)
..++..|..+ .+|..+..++...+.++|.+++..+..++.+
T Consensus 165 FW~fAN~itt--~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 165 FWGFANEITT--VEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566653 3567788999999999999988888777666
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0023 Score=65.61 Aligned_cols=149 Identities=16% Similarity=0.080 Sum_probs=86.3
Q ss_pred CCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHH
Q 041017 294 AGPSFSQETVGFVLS----VGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVI 369 (499)
Q Consensus 294 ~~~g~s~~~~g~~~~----~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 369 (499)
+++|+|++...-+.. ...+..++|+++.||+ +|.|+.+..+.++.++..+.. .... ...+.. +.++
T Consensus 54 ~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~---LG~~~tI~lGail~~iGh~~L-~~~~-----~~~~~g-l~i~ 123 (498)
T COG3104 54 DGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV---LGTRRTIVLGAILMAIGHLVL-AISS-----VSGPGG-LYIG 123 (498)
T ss_pred ccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHH-hccc-----cccccH-HHHH
Confidence 347788875543332 3344555555555544 477888888877777755421 1110 001122 2222
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhCCCC--hhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhH
Q 041017 370 DEGISRMVGQLKWMPLLVLSSRLCPSG--IEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNIL 447 (499)
Q Consensus 370 ~~~l~~~~~~~~~~p~~~~~~~~~p~~--~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~ 447 (499)
...+. ..++..=....+++.|++|++ +|-..++++-...|+|+.++|.+.+++.+..|+ ...+..+++-
T Consensus 124 L~~I~-iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~--------~~gF~~aavG 194 (498)
T COG3104 124 LALII-VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGW--------HVGFGLAAVG 194 (498)
T ss_pred HHHHH-hccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCH--------HHHHHHHHHH
Confidence 22222 222222222356788888765 344567777778899999999999999988763 2445666666
Q ss_pred hHHHHHHHhhcCCC
Q 041017 448 RITPLCVIFLVPRG 461 (499)
Q Consensus 448 ~li~l~~~~~lp~~ 461 (499)
..++++..++.|++
T Consensus 195 m~~gl~~f~~~~r~ 208 (498)
T COG3104 195 MIIGLVIFLLGRRH 208 (498)
T ss_pred HHHHHHHHHHccch
Confidence 67777666666544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0014 Score=50.15 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=38.9
Q ss_pred hhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHH
Q 041017 65 ALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFIL 123 (499)
Q Consensus 65 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~ 123 (499)
.+.++.. .|++ +.|+|+.++|.+.++..+...+ .|++|.++||++ +||..+..
T Consensus 18 ~~~Pfl~-~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~----~~~~~l~~ 71 (77)
T PF12832_consen 18 CLYPFLP-LYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFG----KRKVILLG 71 (77)
T ss_pred HHHhhhh-Hhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----ccHHHHHH
Confidence 4455553 4666 5899999999999887776665 889999999972 55554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.074 Score=52.71 Aligned_cols=123 Identities=12% Similarity=0.160 Sum_probs=79.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|+++.+++.+...+...+.+.+.+.|.+.||+|+|+.-+..+++..++.+.- . .++....+..-++.+
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-----~------~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-----H------SSNYPVLLLGRVLGG 132 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-----h------ccccHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998777777777654321 1 223222222223333
Q ss_pred HHHHhhhhHHHH-HHHh----hCCCChhHHHHHHHHHHHh-hHHHhHHHHHHHHHHHhCC
Q 041017 376 MVGQLKWMPLLV-LSSR----LCPSGIEGTFFALLMSIDN-AGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 376 ~~~~~~~~p~~~-~~~~----~~p~~~~g~~~gl~~~~~~-lg~~ig~~l~g~l~~~~g~ 429 (499)
....+.+...=+ ++.| -.|++..+..++..+...| +-.+.+..++-.+.+..|.
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~ 192 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF 192 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence 333333333222 2333 3677777778887775544 3456666777777776654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0046 Score=62.81 Aligned_cols=108 Identities=18% Similarity=0.127 Sum_probs=79.9
Q ss_pred HHHHHhHHHHHHHHHHHhc--c-ch----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCC-CCcccchHHHHHHHHH
Q 041017 120 YFILAGCLGVFSMLLLSMH--E-KL----HLVFAVSALTASSAGIAIADVTIDACVAQNSICH-PSLASDMQSLCSLCSA 191 (499)
Q Consensus 120 ~ll~~~~~~~~~~~~~~~~--~-~~----~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~-~~~rg~~~~~~~~~~~ 191 (499)
.++++.++.+++.+++.++ + .. ....+.+.+.+.++|.+..-+...++.+|..+++ +++|.....+++.+.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 4667778888887774432 2 11 1112345556778999888888889999998765 5677788889999999
Q ss_pred HHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHHHH
Q 041017 192 IGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLILV 227 (499)
Q Consensus 192 ~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~~~ 227 (499)
+|..++..+.+++-++.||...|.+.++..++.++.
T Consensus 83 ~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999987766655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.007 Score=46.90 Aligned_cols=67 Identities=21% Similarity=0.138 Sum_probs=54.8
Q ss_pred HHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHH
Q 041017 72 QYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHL 143 (499)
Q Consensus 72 ~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~ 143 (499)
.|.++++.++|.++.|++.+...++|.+ ......+.++. ++++.+..+.+...+++..+++.++...
T Consensus 15 LP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ma~~~~~~~ 82 (85)
T PF06779_consen 15 LPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-----RPRRLLRAGLLLTVLSTAAMALTHSFWL 82 (85)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3567889999999999999999999998 55677777752 5567788888888999999998877653
|
Note that many members are hypothetical proteins. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.019 Score=59.82 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHh--hhhHHH
Q 041017 309 VGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQL--KWMPLL 386 (499)
Q Consensus 309 ~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~p~~ 386 (499)
..++..++-+.+.|.+.|++|+|..+.+..+.+.+..+.. .+ .. .++++ +.+..+++ .+....
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~-~~-~~---------~~~~~----~~~l~g~~~~~~s~~~ 134 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCL-LF-QG---------YWFFL----LLGLSGGFSAIFSVGF 134 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHH-HH-HH---------HHHhh----hcccccchhhhhhhhh
Confidence 3456677778888999999999998888766655532211 11 11 11111 11111111 112235
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHh-hcCCCCCCC
Q 041017 387 VLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIF-LVPRGDPDT 465 (499)
Q Consensus 387 ~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~-~lp~~~~~~ 465 (499)
+++++...++.|...+|+.+.+...+..++|.+++.+.+..|+ ...+.+..+..++.+.++. .+||+.++.
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~--------a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI--------ALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 6788889999999999999999999999999999999988653 2345566666677777764 889887776
Q ss_pred CCC
Q 041017 466 SFL 468 (499)
Q Consensus 466 ~~l 468 (499)
++-
T Consensus 207 ~~~ 209 (463)
T KOG2816|consen 207 ERS 209 (463)
T ss_pred ccc
Confidence 644
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.19 Score=52.41 Aligned_cols=126 Identities=10% Similarity=0.008 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhh-hhhccc----------ccCCCc----
Q 041017 300 QETVGFVLSVGPVGSILA-AILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLL-VLRLNL----------KFGIPD---- 363 (499)
Q Consensus 300 ~~~~g~~~~~~~i~~i~g-~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l-~~~~~~----------~~~~~~---- 363 (499)
.+.+.++.....+...+. ..+++++.+|+++++++.+.........+..... .+..+. ....|.
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 345566655554444444 7889999999999998877555444433221111 110000 000010
Q ss_pred ------hhhHHHHHHHHHHHHHhhhh-HHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 364 ------FVALVIDEGISRMVGQLKWM-PLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 364 ------~~~~~~~~~l~~~~~~~~~~-p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
.|....+-+..+..+.+... -.+++..|.+..++..+.+++.....|+|..+++.+...+.+
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222333333332 346789999999999999999999999999999888887764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.058 Score=54.82 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=75.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh---HHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVA---LVIDEG 372 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~---~~~~~~ 372 (499)
+| |....-+.+.++.+..+.-++.+-++.||+|.|....++.....+...+-.+-. +. .++..+. ......
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss--~p---~v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISS--LP---FVPPLFRRPLTHTGQS 148 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc--Cc---cccccchhhhhHHhHH
Confidence 44 444455677788888888888888999999999999888887777554332211 11 1122211 112222
Q ss_pred HHHHHHHh-hhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHH
Q 041017 373 ISRMVGQL-KWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 373 l~~~~~~~-~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~ 426 (499)
+.....-+ ...|. -+..--+|+++|+++..+......+|.+++.++...+...
T Consensus 149 iaa~Aq~Fim~lPs-kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 149 IAAAAQPFILGLPS-KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HHHHhhhHhhcccc-HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 22211111 11111 1122237999999999888888889988888887777654
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.011 Score=63.91 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=118.0
Q ss_pred ecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcc-------c-----
Q 041017 290 TDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLN-------L----- 357 (499)
Q Consensus 290 ~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~-------~----- 357 (499)
+..++.++++.++.|++....-++.++....+.+++.|..+-+++.++.+++++..++..+.....+ .
T Consensus 121 ttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~ 200 (735)
T KOG3626|consen 121 TTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSV 200 (735)
T ss_pred hhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccc
Confidence 3445668888888899888888888898889999999988888888888887776553222100000 0
Q ss_pred --c--------------c---CCCc-------hhhHHHHHHHHHHHHHhhhhHH----HHHHHhhCCCChhHHHHHHHHH
Q 041017 358 --K--------------F---GIPD-------FVALVIDEGISRMVGQLKWMPL----LVLSSRLCPSGIEGTFFALLMS 407 (499)
Q Consensus 358 --~--------------~---~~~~-------~~~~~~~~~l~~~~~~~~~~p~----~~~~~~~~p~~~~g~~~gl~~~ 407 (499)
. . ...+ ........++..+..|+.-.|. .+++-|...++....+.|+..+
T Consensus 201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~ 280 (735)
T KOG3626|consen 201 ENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYS 280 (735)
T ss_pred cCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHH
Confidence 0 0 0000 0001112233445555555554 3567777777888889999999
Q ss_pred HHhhHHHhHHHHHHHHHHHhC-C-------ccc--CCCh-hHHHHHHHHhHhHHHHHHHhhcCCCCCCCCC
Q 041017 408 IDNAGVLSSSWGGGLLLHILK-V-------TRT--QFHN-LWLAILIRNILRITPLCVIFLVPRGDPDTSF 467 (499)
Q Consensus 408 ~~~lg~~ig~~l~g~l~~~~g-~-------~~~--~~~~-~~~~~~i~~~~~li~l~~~~~lp~~~~~~~~ 467 (499)
+..+|=++|=++|++....+. . ++. .|-+ .|..+++++.+.+++.+.++.+|++.++.++
T Consensus 281 ~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~ 351 (735)
T KOG3626|consen 281 MAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQK 351 (735)
T ss_pred HHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 999998888888888886431 1 111 2323 4667888888888888888899999887663
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.068 Score=50.45 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=12.2
Q ss_pred hccCCccccccccHHHH
Q 041017 20 SESKKGCCGCLWTPIYW 36 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~~W 36 (499)
.+.+++..+.+|++.+|
T Consensus 81 ~~~~~s~~~~LK~K~tw 97 (267)
T PF07672_consen 81 LSKKPSYKSILKEKETW 97 (267)
T ss_pred ccccchHHHHHccchHH
Confidence 34456667788888888
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.13 Score=48.52 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=45.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhHh---h--cccChhHHHHHHHHHHHHHHHHHhcccCCC--CCCc-chhhhhHHHH
Q 041017 178 LASDMQSLCSLCSAIGALIGYSISGIF---V--HLIGPKGVFGLMTIPAGLLILVGILLNEPQ--VPDF-NYKQVNLKFL 249 (499)
Q Consensus 178 ~rg~~~~~~~~~~~~G~~lg~~l~g~l---~--~~~gw~~~f~~~a~~~~~~~~~~~~~~e~~--~~~~-~~~~~~~~~~ 249 (499)
+|+..+.+-..+.++|.++....--.- . ..-.|++++.+.++..++.++.+..+.++- ..++ ++++++.+.
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k~~~~~- 81 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEKENSTL- 81 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccccccccc-
Confidence 455555554556777777654332111 1 123599998888777666555544332221 1111 111100001
Q ss_pred HHHHHHHHHccCcchhhHHH
Q 041017 250 DAGKAMWTTLKFPLVWRPCL 269 (499)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~~l 269 (499)
+......+.+|++..|...+
T Consensus 82 ~~~~s~~~~LK~K~tw~w~~ 101 (267)
T PF07672_consen 82 SKKPSYKSILKEKETWKWIL 101 (267)
T ss_pred cccchHHHHHccchHHHHHH
Confidence 11134567889998776543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.14 Score=52.85 Aligned_cols=139 Identities=13% Similarity=0.191 Sum_probs=78.8
Q ss_pred hhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHH
Q 041017 50 LGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLG 128 (499)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~ 128 (499)
.++.++|...-+++ +..+ .|++.+ |+++..+|.+-+...+.-.. ..++.++.+|+ |--| .-+++....
T Consensus 265 ~alalLY~TVLsf~----~lmt-~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri---Glvr--~G~~~l~~q 333 (432)
T PF06963_consen 265 FALALLYFTVLSFG----GLMT-AYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI---GLVR--AGLWSLWWQ 333 (432)
T ss_pred HHHHHHHHHHhcCc----HHHH-HHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchh--hHHHHHHHH
Confidence 44555664333443 2333 456544 99999999988877665444 55677777776 2122 222333322
Q ss_pred HHHHHHH---Hhccc-----hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHH
Q 041017 129 VFSMLLL---SMHEK-----LHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSI 200 (499)
Q Consensus 129 ~~~~~~~---~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l 200 (499)
.++..++ -+.+. .....++.+..+.-+|.=..|....-++-|.. ++++||...|.-+...++-.++-..+
T Consensus 334 ~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V--~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 334 WVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENV--PESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccC--CHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 12222 22223344455566776666766655555544 33689999998888888877776655
Q ss_pred H
Q 041017 201 S 201 (499)
Q Consensus 201 ~ 201 (499)
+
T Consensus 412 ~ 412 (432)
T PF06963_consen 412 T 412 (432)
T ss_pred H
Confidence 4
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.076 Score=55.16 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=84.8
Q ss_pred HhhhccC---CChhHHHHHHHhhhchhhhh-hHH-hhhccccccCCCCcchHHHHHhHHHHHHHHH-HHhccch--HH--
Q 041017 74 YMKDVQK---VQPSEAQVYAGITSLPWIVK-PLW-GLLTDVLPIFGYRRRPYFILAGCLGVFSMLL-LSMHEKL--HL-- 143 (499)
Q Consensus 74 ~l~~~~g---~s~~~~g~~~~~~~l~~~~~-pl~-G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~-~~~~~~~--~~-- 143 (499)
+..+..+ +|+...|.+..+..+...++ .++ -+++++ +-|+.+.++.++.++..+. +.+.... ..
T Consensus 242 ~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~------~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi 315 (433)
T PF03092_consen 242 FQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW------SWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGI 315 (433)
T ss_pred EEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCc
Confidence 3345566 88888887765555544432 223 445554 3344555555444433222 1111111 00
Q ss_pred ---HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh-----h---H
Q 041017 144 ---VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP-----K---G 212 (499)
Q Consensus 144 ---~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw-----~---~ 212 (499)
+..+.--.+..+...+...+...+.+|+.|+ ..-|...++.....++|..++..++..+.+.++. . +
T Consensus 316 ~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~--G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~ 393 (433)
T PF03092_consen 316 PDQWFALGDTILEEVIGMIAFMPSLVLAARLCPK--GSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWL 393 (433)
T ss_pred CCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHH
Confidence 0111112334455555666667778888854 4567888999999999999999888888765542 1 2
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCC
Q 041017 213 VFGLMTIPAGLLILVGILLNEPQV 236 (499)
Q Consensus 213 ~f~~~a~~~~~~~~~~~~~~e~~~ 236 (499)
..++..+..++.+.+..++|++++
T Consensus 394 lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 394 LILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCch
Confidence 333444444333445556676544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.2 Score=50.87 Aligned_cols=56 Identities=9% Similarity=-0.053 Sum_probs=41.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh
Q 041017 148 SALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV 205 (499)
Q Consensus 148 ~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~ 205 (499)
...+..|+..+...+-....+.|-. ++++|...++....+.++|..++..++-++-
T Consensus 340 ~lif~eGLlGGa~YVNtF~~I~~~~--~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 340 VLIFYEGLLGGASYVNTFYRISEEV--PPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445567777777776666666543 3578999999999999999999988775543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.33 Score=42.56 Aligned_cols=95 Identities=8% Similarity=-0.087 Sum_probs=65.9
Q ss_pred hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcc
Q 041017 100 KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLA 179 (499)
Q Consensus 100 ~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~r 179 (499)
.++...+.+++ +.|+.++++.+.+.+-.... +-++.+ .++....+.|++.+...+....++.+..+ ++++
T Consensus 54 ~l~~P~iv~~l-----g~K~sm~lg~~~y~~y~~~~-~~~~~~--~l~~~s~l~G~~~a~lW~aqg~ylt~~s~--~~~~ 123 (156)
T PF05978_consen 54 CLFAPSIVNKL-----GPKWSMILGSLGYAIYIASF-FYPNSY--TLYPASALLGFGAALLWTAQGTYLTSYST--EETI 123 (156)
T ss_pred HHhHHHHHHHH-----hhHHHHHHHHHHHHHHHHHH-HhhhHH--HHHHHHHHHhhhhHHhhHhhhHHHHHcCC--HHHH
Confidence 45556667776 67788888888777554333 334433 23445577899999999888888888764 3577
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHh
Q 041017 180 SDMQSLCSLCSAIGALIGYSISGIF 204 (499)
Q Consensus 180 g~~~~~~~~~~~~G~~lg~~l~g~l 204 (499)
++..++.+.....+.++|..+.-.+
T Consensus 124 ~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 124 GRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888887665433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.43 Score=41.84 Aligned_cols=98 Identities=7% Similarity=0.040 Sum_probs=67.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCC
Q 041017 316 LAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPS 395 (499)
Q Consensus 316 ~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~ 395 (499)
+..++.+.+.++.|.|..+.++.+...+.... .. .|+.+..+....+.++..+..|.+...++++...+
T Consensus 52 ~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~----------~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 52 ISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FF----------YPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HH----------hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 33344455667778888888877666653211 11 23334444556677788888888777888999999
Q ss_pred ChhHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 041017 396 GIEGTFFALLMSIDNAGVLSSSWGGGLLL 424 (499)
Q Consensus 396 ~~~g~~~gl~~~~~~lg~~ig~~l~g~l~ 424 (499)
+.+++..|+.-.+.+.+..+|..+.-.+.
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777776655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=39.66 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=39.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQL 339 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~ 339 (499)
+.|+|+.++|.+..+..+..+++..++|.+.||.++++.......
T Consensus 29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 389999999999999999999999999999999999887766443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.6 Score=46.49 Aligned_cols=147 Identities=11% Similarity=-0.033 Sum_probs=73.0
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHH---HHHHHHHhccchH-
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGV---FSMLLLSMHEKLH- 142 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~---~~~~~~~~~~~~~- 142 (499)
-....-.+.-.+|-+..+.+.+.++++.+.++ .-+.|.+.++ ..+.+..+-..+.. ++..++.....+.
T Consensus 34 Ev~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~------~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~ 107 (521)
T PRK03612 34 ELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD------AAAGFVAVELLLALLGGLSALILYAAFAFQG 107 (521)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445788888889999999988886 4445555432 12222222111111 1111111111111
Q ss_pred --HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCC-CCcccchHHHHHHHHHHHHHHHHHHHhHhh-cccChhHHHHHHH
Q 041017 143 --LVFAVSALTASSAGIAIADVTIDACVAQNSICH-PSLASDMQSLCSLCSAIGALIGYSISGIFV-HLIGPKGVFGLMT 218 (499)
Q Consensus 143 --~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~-~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~-~~~gw~~~f~~~a 218 (499)
........++.++..+...+. +..+..+. .++-++..|-.+....+|+++|.++.+++. ..+|-....++.+
T Consensus 108 ~~~~~~~~~~~~~~~l~G~~~Pl----~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a 183 (521)
T PRK03612 108 LSRLLLYVLVLLIGLLIGMEIPL----LMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTG 183 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 011111223334444443332 22222211 123456677888899999999999988765 4677655555555
Q ss_pred HHHHHH
Q 041017 219 IPAGLL 224 (499)
Q Consensus 219 ~~~~~~ 224 (499)
...+++
T Consensus 184 ~l~~~~ 189 (521)
T PRK03612 184 SLNLLA 189 (521)
T ss_pred HHHHHH
Confidence 554444
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.98 E-value=4 Score=40.88 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=24.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHhhcccChhH
Q 041017 180 SDMQSLCSLCSAIGALIGYSISGIFVHLIGPKG 212 (499)
Q Consensus 180 g~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~ 212 (499)
.++.+........-.+++|.+.|.++...+.|.
T Consensus 174 t~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~ 206 (503)
T KOG2601|consen 174 TNMNATIRGIDQSTNLLAPVITGLIITFVSLRA 206 (503)
T ss_pred hhcchhhhhhhhhhhchhhhhhcccceeechhh
Confidence 344466666677778889999999988777765
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.88 E-value=9.3 Score=39.68 Aligned_cols=115 Identities=14% Similarity=-0.087 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhc---ccccCCCchhhHHHHHHHHHHHHHhhhh
Q 041017 307 LSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRL---NLKFGIPDFVALVIDEGISRMVGQLKWM 383 (499)
Q Consensus 307 ~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (499)
.....++=++|..+..+......+.+.+.+..+...+. ++.+++.... +....+++-++.+....+.++..|....
T Consensus 313 ~~~fNvgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iF-IPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s 391 (437)
T TIGR00939 313 FLLFNLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLF-IPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGS 391 (437)
T ss_pred HHHHHHHHHHHhhhhheeEeeCCCccchHHHHHHHHHH-HHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHH
Confidence 34667777788775543321111111333444444442 2222221110 1000122333333344555555555443
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHH
Q 041017 384 PLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGL 422 (499)
Q Consensus 384 p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~ 422 (499)
....+..+..+++.|-.+-.+.+.+-.+|-.+|..++-.
T Consensus 392 ~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 392 LSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666667777776665443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=93.53 E-value=6.7 Score=40.12 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=75.1
Q ss_pred CCCChhHHH-HHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHH
Q 041017 296 PSFSQETVG-FVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGIS 374 (499)
Q Consensus 296 ~g~s~~~~g-~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 374 (499)
.|++..+.. -+.=+..-..+...+...-+.|..+.|+++++..+...+..++ +... ..... .-+.
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~l---ll~~-------~sv~~----mq~~ 100 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLL---LLFG-------TSVLA----MQLM 100 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHH-------CcHHH----HHHH
Confidence 577776543 1221222233333334444567778888887766554443221 1111 11111 1112
Q ss_pred HHHHHhhh---hHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHH
Q 041017 375 RMVGQLKW---MPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITP 451 (499)
Q Consensus 375 ~~~~~~~~---~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~ 451 (499)
++..+... ..+.+++-...|+++--++.+...+..-+|..+|..+|-.+...-+ .+|..+. .+......++
T Consensus 101 q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~---~sy~~L~---~isl~~~~~a 174 (412)
T PF01770_consen 101 QFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG---VSYFQLN---YISLASVSLA 174 (412)
T ss_pred HHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHH---HHHHHHHHHH
Confidence 22222222 2234555566777777777787777778888888877776665432 3343332 2333334555
Q ss_pred HHHHhhcCCCC
Q 041017 452 LCVIFLVPRGD 462 (499)
Q Consensus 452 l~~~~~lp~~~ 462 (499)
++..+++|..+
T Consensus 175 ~~~~~fLP~~~ 185 (412)
T PF01770_consen 175 LLIALFLPMPK 185 (412)
T ss_pred HHHHHHcCCCC
Confidence 55556777654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.8 Score=49.14 Aligned_cols=148 Identities=15% Similarity=0.058 Sum_probs=89.4
Q ss_pred HHhhhccCCChhHHHHHHHhhhchhhhh-hHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccc-----------
Q 041017 73 YYMKDVQKVQPSEAQVYAGITSLPWIVK-PLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEK----------- 140 (499)
Q Consensus 73 ~~l~~~~g~s~~~~g~~~~~~~l~~~~~-pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~----------- 140 (499)
.|+.+++|.+...+.-..+.+.-..... .+.+.++|.+ .+|-+.+.++.++..++..++.+...
T Consensus 62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f----~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSF----LGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 3667788888766655554443333345 4689999987 36777788888887777555433210
Q ss_pred ---------hH--H-HHHHHHHHHHHhHHHHHHHHHHHHHHhhccC-CCC---cccchHHHHHHHHHHHHHHHHHHHhHh
Q 041017 141 ---------LH--L-VFAVSALTASSAGIAIADVTIDACVAQNSIC-HPS---LASDMQSLCSLCSAIGALIGYSISGIF 204 (499)
Q Consensus 141 ---------~~--~-~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~-~~~---~rg~~~~~~~~~~~~G~~lg~~l~g~l 204 (499)
.. . ..+...+-+.++|.+..-+...+.-+|-.++ +|+ .......+++...++|..++..+..++
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 01 1 1122233334445544333333444444431 222 233556777888899999998888788
Q ss_pred hcccChhHHHHHHHHHHHHH
Q 041017 205 VHLIGPKGVFGLMTIPAGLL 224 (499)
Q Consensus 205 ~~~~gw~~~f~~~a~~~~~~ 224 (499)
-+..||..-|.+..+...+.
T Consensus 218 q~~~~w~lgf~i~~~~~~la 237 (571)
T KOG1237|consen 218 QDNVGWKLGFGIPTVLNALA 237 (571)
T ss_pred hhcccceeeccHHHHHHHHH
Confidence 78889998888776655544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.3 Score=47.24 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=70.7
Q ss_pred HHHHHhhhchhh-hhhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHHHHHHHHHH
Q 041017 87 QVYAGITSLPWI-VKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGIAIADVTID 165 (499)
Q Consensus 87 g~~~~~~~l~~~-~~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 165 (499)
|.+.-.-.+|.. +|...-.+-||+| ++.| +.+..++.+.+....+++++.+.. +....+.+++.++.++...
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfp---f~~R--i~~~v~~sa~s~~lVafs~s~~~s--L~GV~~aSissGlGEiTFL 137 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFP---FGFR--IALVVLLSALSFFLVAFSNSVPMS--LLGVVFASISSGLGEITFL 137 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcc---cchH--HHHHHHHHhcceEEEEeccchhHH--HhhhhhhhhcCCcceeehh
Confidence 333334456654 3777777889985 4444 334455566677777777776643 2344556777777776655
Q ss_pred HHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhc--ccChhHHHHHHHHHHHHHHHHHh-cccC
Q 041017 166 ACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVH--LIGPKGVFGLMTIPAGLLILVGI-LLNE 233 (499)
Q Consensus 166 alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~--~~gw~~~f~~~a~~~~~~~~~~~-~~~e 233 (499)
++.+.. + |.. .+.+..+.+.++++|..--..+.+ .++.|...+++...+++....++ .+++
T Consensus 138 ~lss~Y----~--~~~-i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 138 ALSSRY----P--SIV-IAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred hhhccC----C--Cce-eccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 543322 1 111 122222334445555543333433 35677777776666655544433 3443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.08 E-value=2.5 Score=39.93 Aligned_cols=117 Identities=23% Similarity=0.167 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhh
Q 041017 302 TVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLK 381 (499)
Q Consensus 302 ~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (499)
..+.......++...+..+.|++.||+|+|+.+..+........+. ..+.. ..............+...+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~g~~~~~~ 111 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLL-LALAP-------NVGLALLLILRLLQGLGGGGL 111 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH-HHhCc-------cchHHHHHHHHHHHHhhhHHH
Confidence 4566666777777777789999999998887666655432221111 11110 011111111122233333333
Q ss_pred hhHHHHHHHhhCCC-ChhHHHHHHHHH-HHhhHHHhHHHHHHHHHHH
Q 041017 382 WMPLLVLSSRLCPS-GIEGTFFALLMS-IDNAGVLSSSWGGGLLLHI 426 (499)
Q Consensus 382 ~~p~~~~~~~~~p~-~~~g~~~gl~~~-~~~lg~~ig~~l~g~l~~~ 426 (499)
.....++..+..|+ +.++...+.... ...+|..++|.+++.+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445788888887 678888888888 5777888888887777766
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=93.04 E-value=4.9 Score=44.01 Aligned_cols=69 Identities=22% Similarity=0.133 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCC---hhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHH
Q 041017 385 LLVLSSRLCPSG---IEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCV 454 (499)
Q Consensus 385 ~~~~~~~~~p~~---~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~ 454 (499)
..+...+.++++ .+-+.+.++..+.|+|+.+++.+.+.+.+..+- -+.+...+..+.+.++..+++++.
T Consensus 106 vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~-fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 106 VSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC-FGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred chhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccCcchHHHHHHHHHHHHHHHHH
Confidence 346667766644 356678888888899999999888887754310 011223455566666555555444
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.89 E-value=3.9 Score=42.39 Aligned_cols=169 Identities=14% Similarity=0.123 Sum_probs=87.9
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhh-hhhhhhh-----ccc------ccCCC-c-
Q 041017 299 SQETVGFVLSVGPV-GSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGML-DLLLVLR-----LNL------KFGIP-D- 363 (499)
Q Consensus 299 s~~~~g~~~~~~~i-~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~-~~~l~~~-----~~~------~~~~~-~- 363 (499)
+++.+.++-....+ ++++..+++.++.++..+++++-.........+++ ...+.+. .+. ....| .
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 34555666554444 77788889999999999988876644433332221 1111110 000 00112 1
Q ss_pred --------hhhHHHHHHHHHHHHHhhhh-HHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCC
Q 041017 364 --------FVALVIDEGISRMVGQLKWM-PLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQF 434 (499)
Q Consensus 364 --------~~~~~~~~~l~~~~~~~~~~-p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~ 434 (499)
.|-....-.+.+..+.+... -.+....|++..++..+.+++.+...|++..+++.+.+++...-.......
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~ 218 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF 218 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence 01111111222333322221 235678899998899999999999999998888777777665322111111
Q ss_pred Ch--hHHHHHHHHhHhHHHHHHHhhcCCCCCCCCC
Q 041017 435 HN--LWLAILIRNILRITPLCVIFLVPRGDPDTSF 467 (499)
Q Consensus 435 ~~--~~~~~~i~~~~~li~l~~~~~lp~~~~~~~~ 467 (499)
.. ++..+.+.....++.+...+++.+.-.++..
T Consensus 219 ~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~ 253 (509)
T COG3202 219 KDLLLQILFIVIVILGIIAILLYRYINRNVLTDPL 253 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 11 2333333333334444444555555444443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.77 E-value=8.5 Score=40.04 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=59.2
Q ss_pred hchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhc-cc-h--------------HHHHHHHHHHHHHhH
Q 041017 94 SLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMH-EK-L--------------HLVFAVSALTASSAG 156 (499)
Q Consensus 94 ~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~-~~-~--------------~~~~~~~~~~l~~~g 156 (499)
.++..+ +.+++.+++|.+ +.+|++.+.++..+..+..++.-.. |+ . ......+..++.|++
T Consensus 289 g~g~v~~g~~~~~l~~rir--~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIR--GFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred hHHHHHHHHHHHHHhhhhh--hcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 455555 678899999875 5678888888887777666554332 10 0 111223334555565
Q ss_pred HHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHH
Q 041017 157 IAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYS 199 (499)
Q Consensus 157 ~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~ 199 (499)
=+........++.... |++|..+.++...-..++..++-.
T Consensus 367 D~~~~t~~~~ii~~~~---~~~~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY---PDDRAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHhh
Confidence 5555444555556554 355666666666666666655443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.09 E-value=6.5 Score=41.39 Aligned_cols=127 Identities=13% Similarity=0.053 Sum_probs=71.3
Q ss_pred ChhHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhh-hhhhhhhc-----cc-----ccCCCc--h
Q 041017 299 SQETVGFVLSV-GPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGML-DLLLVLRL-----NL-----KFGIPD--F 364 (499)
Q Consensus 299 s~~~~g~~~~~-~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~-~~~l~~~~-----~~-----~~~~~~--~ 364 (499)
+++.+..+-.. ....+++-..++.++.+++++.+++-+........+.. ...+.+.- +. ....+. .
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44555555442 23355666778999999999999877654443332221 11111110 00 000000 0
Q ss_pred hhH--------HHHHHHHHHHHHhhh-hHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 365 VAL--------VIDEGISRMVGQLKW-MPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 365 ~~~--------~~~~~l~~~~~~~~~-~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
+++ ..+-++.+..+.... .-.+.+..|.++.++..+.|++.....|+|..+++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 011112222222221 1246778899999999999999999999998888888777777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=5.6 Score=42.33 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhhHHHhHHHHHHHHHH-HhCCc
Q 041017 398 EGTFFALLMSIDNAGVLSSSWGGGLLLH-ILKVT 430 (499)
Q Consensus 398 ~g~~~gl~~~~~~lg~~ig~~l~g~l~~-~~g~~ 430 (499)
.|...|-..++..+|+.+|+++.++++- .+|..
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~ 176 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLI 176 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchH
Confidence 4556677777888999999998887664 66653
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.32 Score=49.64 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=71.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHH----hCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccC----CCchhhH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNS----LKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFG----IPDFVAL 367 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~----~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~~~~~ 367 (499)
.|.+....+++...+-+..++-..+.|.. -.|+||||-++.+........+..+.........++ -+.....
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 56666666666655544444444444444 456889888777655554444332211111111111 1111111
Q ss_pred ----HHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHH-HHHHHHHHHhhHHHhHHHHHH
Q 041017 368 ----VIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGT-FFALLMSIDNAGVLSSSWGGG 421 (499)
Q Consensus 368 ----~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~-~~gl~~~~~~lg~~ig~~l~g 421 (499)
+....+..+.......|.-++.++++.++.+-+ +++....+..+|..+|-.+++
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 122335566676777888999999988777777 777777777777666655544
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=89.96 E-value=1.5 Score=33.96 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=41.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLS 344 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~ 344 (499)
.++|..+.|++.+...+|.++|+....++.++.+.++.+..+.+...++
T Consensus 22 ~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (85)
T PF06779_consen 22 GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLS 70 (85)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999998888877788877776665553
|
Note that many members are hypothetical proteins. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.71 E-value=7.2 Score=40.68 Aligned_cols=58 Identities=21% Similarity=0.127 Sum_probs=36.7
Q ss_pred HHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccCh
Q 041017 151 TASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGP 210 (499)
Q Consensus 151 ~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw 210 (499)
.+..+....+.+...|.-+.++ +|.-.|.-|++.|...|+|+---..+.-+++|.+.+
T Consensus 413 ~l~sf~stvmFVai~AFharIS--DP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~ 470 (544)
T PF13000_consen 413 VLSSFMSTVMFVAIMAFHARIS--DPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTV 470 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--CcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccc
Confidence 4445555555555555555555 678889999999999998875544444455554433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.31 Score=45.93 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=34.1
Q ss_pred HhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhcccc------ccCCCCcchHHHHHhHH
Q 041017 74 YMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVL------PIFGYRRRPYFILAGCL 127 (499)
Q Consensus 74 ~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~------~~~g~~Rk~~ll~~~~~ 127 (499)
+++ +.|++|.....++-+.....++ .|+.|..+|.= .+.| ||+.|-.++.++
T Consensus 43 flt-qiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G-~~~~wh~~gt~l 101 (412)
T KOG4830|consen 43 FLT-QIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIG-RRMSWHLIGTVL 101 (412)
T ss_pred HHH-HhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhc-ceeeeeecccEE
Confidence 554 5799998888777667777776 88888776621 1124 666666555544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.52 E-value=4 Score=41.02 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=30.6
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHH
Q 041017 175 HPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGV 213 (499)
Q Consensus 175 ~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~ 213 (499)
+|...|.-+++.+...++|..--..+..++.+.++|...
T Consensus 399 dp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C 437 (510)
T KOG3574|consen 399 DPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQC 437 (510)
T ss_pred CcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeec
Confidence 567788999999999999987777777777777666543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=80.94 E-value=14 Score=38.49 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=18.8
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHH
Q 041017 175 HPSLASDMQSLCSLCSAIGALIGYSIS 201 (499)
Q Consensus 175 ~~~~rg~~~~~~~~~~~~G~~lg~~l~ 201 (499)
++++|..+..+...+..+|..+|..++
T Consensus 402 ~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 402 DPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345676666677777788888777664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 499 | |||
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 |
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 41/328 (12%), Positives = 93/328 (28%), Gaps = 15/328 (4%)
Query: 98 IVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGI 157
+ +PL+GLL+D G R+ +I+ G L +F+ + + L + +
Sbjct: 58 LFQPLFGLLSDK---LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114
Query: 158 AIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLM 217
V ++ + +G +G SI GI + +
Sbjct: 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGS 174
Query: 218 TIPAGLLILVGILLNE-PQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFA 276
L +L+ + P + K + P +W LY+
Sbjct: 175 GCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSC 234
Query: 277 VSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFW 336
+ ++T A G+V ++G + + + ++ L
Sbjct: 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL 294
Query: 337 AQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSG 396
A + +R+ + +VI + + + +
Sbjct: 295 AGTIM----------SVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344
Query: 397 IEGTFFALLMSIDN-AGVLSSSWGGGLL 423
T + + ++ S G +
Sbjct: 345 FSATIYLVCFCFFKQLAMIFMSVLAGNM 372
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 50/306 (16%), Positives = 92/306 (30%), Gaps = 86/306 (28%)
Query: 226 LVGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTL-KFP--LVWRPCLYMYLSFAVSLNIH 282
L+ + E + P + +++ ++ F V R Y L +
Sbjct: 94 LMSPIKTEQRQPSMMTR----MYIEQRDRLYNDNQVFAKYNVSRLQPY--------LKLR 141
Query: 283 EGLFYWYTDSKAGPSFSQETVGFVLSVGPVG---SILAAILYQNSLKDYPFQDVL----F 335
+ L VL G +G + +A Y Q + F
Sbjct: 142 QALL------------ELRPAKNVLIDGVLGSGKTWVALD----VCLSYKVQCKMDFKIF 185
Query: 336 WAQLLSGLSGMLDLLLVLRLNLKFGI-PDFVALV---------IDEGISRMVGQLKWMP- 384
W L + +L + L + I P++ + I + + LK P
Sbjct: 186 WLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 385 ---LLVL----SSRLCPSGIEGTFFAL----LMSIDNAGV---LSSSWGGGLLL-HILKV 429
LLVL +++ F L L++ V LS++ + L H
Sbjct: 244 ENCLLVLLNVQNAKA----WNA--FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 430 -TRTQFHNL---WLAI----LIRNILRITPLCVIFLVP---RGDPDTS--FLPAELESKE 476
T + +L +L L R +L P + ++ R T + +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 477 ETAEAS 482
E+S
Sbjct: 357 TIIESS 362
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.96 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.93 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.92 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.86 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.31 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.08 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.08 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.85 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.79 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.68 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=259.85 Aligned_cols=361 Identities=11% Similarity=0.010 Sum_probs=253.0
Q ss_pred chhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHH
Q 041017 46 WSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILA 124 (499)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~ 124 (499)
|+.+..+++.+ +..+++........+.+ .+++ .++++.|++.+++.++..+ +|++|+++||+ +||+.++++
T Consensus 27 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~ 98 (451)
T 1pw4_A 27 WQIFLGIFFGY-AAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHH-HHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHHH
Confidence 33334444444 45555544555566544 5678 9999999999999999887 89999999997 678899999
Q ss_pred hHHHHHHHHHHHh----ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHH
Q 041017 125 GCLGVFSMLLLSM----HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSI 200 (499)
Q Consensus 125 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l 200 (499)
.++.+++.+++++ +++++. +++.+++.|++.+...+...+++.|..+ +++|++.+++.+.+.++|.++++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAV--MFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSH--HHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHH--HHHHHHHHHHHhhhccchHHHHHHHHCC--chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 777764 3566888999999888889999999884 4689999999999999999999999
Q ss_pred HhHhhcccC-hhHHHHHHHHHHHHH-HHHHhcccCCCCCCcch---h--hh-------hHHHHHHHHH--HHHHccCcch
Q 041017 201 SGIFVHLIG-PKGVFGLMTIPAGLL-ILVGILLNEPQVPDFNY---K--QV-------NLKFLDAGKA--MWTTLKFPLV 264 (499)
Q Consensus 201 ~g~l~~~~g-w~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~---~--~~-------~~~~~~~~~~--~~~~l~~~~~ 264 (499)
++.+.+..| ||+.|++.++..++. ++..+++||++++.+.. + +. +++.+...++ ..+.+++|.+
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 254 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHH
Confidence 999888888 999999988877665 34456678765542110 0 00 0000011111 2456778887
Q ss_pred hhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 041017 265 WRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDY--PFQDVLFWAQLLSG 342 (499)
Q Consensus 265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~--~~r~~l~~~~~~~~ 342 (499)
+...+..++............+.+..+ .+|+++.+.+.+.....++.+++.++.+++.||+ ++|+.+..+.++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKE---VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTT---BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 766655554433211111111222222 2788999999988888899999999999999998 88888777665554
Q ss_pred HHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh-HHHhHHHHHH
Q 041017 343 LSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA-GVLSSSWGGG 421 (499)
Q Consensus 343 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~ig~~l~g 421 (499)
...+..+.... ..+.+.......+.++..+....+..++..|..|++.+|+++|+.+.+.++ |..++|.+.|
T Consensus 332 ~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 332 TIATIVYWMNP-------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp HHHHHHTTSCC-------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111110 012222222233334444444444567889999999999999999999999 9999999999
Q ss_pred HHHHHhC
Q 041017 422 LLLHILK 428 (499)
Q Consensus 422 ~l~~~~g 428 (499)
.+.+..|
T Consensus 405 ~l~~~~g 411 (451)
T 1pw4_A 405 YTVDFFG 411 (451)
T ss_dssp HHHHSSC
T ss_pred HHHHhcC
Confidence 9998765
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=243.84 Aligned_cols=341 Identities=10% Similarity=0.039 Sum_probs=243.2
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHH-
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLL- 135 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~- 135 (499)
+..+++........+. +++++|+|+++.|++.+++.++..+ +|++|+++||+ +||+.++++.++.+++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHH
Confidence 4556655555566654 5678999999999999999999886 89999999997 68888999999999998888
Q ss_pred --HhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh-cccC---
Q 041017 136 --SMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV-HLIG--- 209 (499)
Q Consensus 136 --~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~-~~~g--- 209 (499)
+++++++. ++..+++.|++.+...+...+++.|..+ +++|++..++.+.+.++|.++++.+++.+. +..+
T Consensus 110 ~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 110 PAAEIMNYTL--FLVGLFIIAAGLGCLETAANPFVTVLGP--ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHTTCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSSC--STTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred hccccccHHH--HHHHHHHHHhhHHHhhhhHHHHHHHHcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77778764 4567888999999999999999999884 468999999999999999999999999988 5544
Q ss_pred ----------------------hhHHHHHHHHHHHHHHHHHh--cccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchh
Q 041017 210 ----------------------PKGVFGLMTIPAGLLILVGI--LLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVW 265 (499)
Q Consensus 210 ----------------------w~~~f~~~a~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (499)
||+.|++.++...+..+..+ ..||++++++++++ ++ +..+..++.+|+|.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~ 261 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-QG---SFSASLSRLARIRHWR 261 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-TT---SHHHHHHHHTTCSHHH
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc-cc---chhhhHHHHHhChHHH
Confidence 99999887766655533332 34555443221111 11 1123345678899887
Q ss_pred hHHHHHhhhhhccccccccceeE-EecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 041017 266 RPCLYMYLSFAVSLNIHEGLFYW-YTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLS 344 (499)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~ 344 (499)
...+..++............+.+ ..+. +|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+.++.++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEI---PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 76665554333211111111222 3332 6889999999888888999999999999999999999988877666554
Q ss_pred hhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 041017 345 GMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLL 424 (499)
Q Consensus 345 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~ 424 (499)
.+. ... .+.....+. ..+.++..+.......++..|..|++ +++..++.. ...+|..++|.+.|.+.
T Consensus 339 ~~~-~~~---------~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~ 405 (438)
T 3o7q_A 339 CLI-SAF---------AGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS 405 (438)
T ss_dssp HHH-HHH---------CCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHH-HHH---------cCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence 321 111 111111111 23334444444444567778888866 788888776 77899999999999999
Q ss_pred HHhC
Q 041017 425 HILK 428 (499)
Q Consensus 425 ~~~g 428 (499)
+..|
T Consensus 406 ~~~g 409 (438)
T 3o7q_A 406 DAAG 409 (438)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9876
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=238.72 Aligned_cols=388 Identities=14% Similarity=0.095 Sum_probs=241.9
Q ss_pred hhccchhhhhhhhHHHHhhhccC--------CChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQK--------VQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLG 128 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g--------~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~ 128 (499)
+.+|+|.+..+.+.+. ++++++ .+.++.|++.+++.++..+ .+++|+++||+ +||+.++++.++.
T Consensus 22 ~~~Gyd~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-----GRk~~l~~~~~l~ 95 (491)
T 4gc0_A 22 LLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GRRDSLKIAAVLF 95 (491)
T ss_dssp HHHHHHHHGGGGTHHH-HHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHH
Confidence 5678887766666653 334442 2345678888889999888 67899999997 7889999999999
Q ss_pred HHHHHHHHh------------------ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHH
Q 041017 129 VFSMLLLSM------------------HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCS 190 (499)
Q Consensus 129 ~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~ 190 (499)
.++.+++++ ++|++ .+++.|++.|+|.+...+...+++.|.++ +++|++..++.+.+.
T Consensus 96 ~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~--~l~~~R~l~G~g~G~~~~~~~~~i~E~~p--~~~rg~~~~~~~~~~ 171 (491)
T 4gc0_A 96 FISGVGSAWPELGFTSINPDNTVPVYLAGYVP--EFVIYRIIGGIGVGLASMLSPMYIAELAP--AHIRGKLVSFNQFAI 171 (491)
T ss_dssp HHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSC--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCC--HHhhhhhHHhhhhhh
Confidence 999988884 45554 35678999999999999899999999984 478999999999999
Q ss_pred HHHHHHHHHHHhHhhcc--------cChhHHHHHHHHHHHHHHHHHhcccCCCCCCc---chhhhhHH------------
Q 041017 191 AIGALIGYSISGIFVHL--------IGPKGVFGLMTIPAGLLILVGILLNEPQVPDF---NYKQVNLK------------ 247 (499)
Q Consensus 191 ~~G~~lg~~l~g~l~~~--------~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~------------ 247 (499)
.+|.++++.++..+... .+||..+.+..++.++.++..++.||+|++.. +.++..+.
T Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~ 251 (491)
T 4gc0_A 172 IFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ 251 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence 99999998887665432 35777777767776666677788999986531 11100000
Q ss_pred ----HHHHH----HH--HHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHH
Q 041017 248 ----FLDAG----KA--MWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILA 317 (499)
Q Consensus 248 ----~~~~~----~~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g 317 (499)
.++.. +. ....++.++........++.+.. .. ....+|.+...+..+.+............+..+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4gc0_A 252 AVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFV--GI-NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTF 328 (491)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHT--CH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHh--hh-hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHH
Confidence 00000 00 01112222222222222222211 11 11112211111114455555555556667778888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHH-HHHHHhhCCCC
Q 041017 318 AILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPL-LVLSSRLCPSG 396 (499)
Q Consensus 318 ~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-~~~~~~~~p~~ 396 (499)
..+.+++.||+|+|+.+..+.....++.+........ .......+....+........+.|. ..+.+|++|.+
T Consensus 329 ~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~ 402 (491)
T 4gc0_A 329 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 402 (491)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence 8888899999999998887776666543221111110 1111122222222223334444454 47889999999
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHH-hhcCCCCCCCC
Q 041017 397 IEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVI-FLVPRGDPDTS 466 (499)
Q Consensus 397 ~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~-~~lp~~~~~~~ 466 (499)
.|+++.|+.+.+++++..+++.+.+.+.+...... .+. ....+.+.+++++++.++. +++||||+++.
T Consensus 403 ~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~-~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 403 IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFH-NGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-hhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 99999999999999999999888776654321110 010 1122344455556666555 58999998765
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=224.71 Aligned_cols=346 Identities=15% Similarity=0.057 Sum_probs=208.8
Q ss_pred hhHHHHhhhc-----cCCChhHHHHHHHhhhchhhh-hhHHhhhccc-cccCCCCcchHHHHHhHHHHHHHHHHHhccch
Q 041017 69 VGTQYYMKDV-----QKVQPSEAQVYAGITSLPWIV-KPLWGLLTDV-LPIFGYRRRPYFILAGCLGVFSMLLLSMHEKL 141 (499)
Q Consensus 69 ~~~~~~l~~~-----~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~-~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~ 141 (499)
...+.|++++ +|+|+++.+++.+++.++..+ +|+.|+++|| + +||+.++.+.++..++.+.++++++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~~~~~~~~~~~~~~~~~~~~~~~ 108 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARPAVFWGGVLIMLGHIVLALPFGA 108 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHHHHSCCST
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3444566666 999999999999999999876 8899999999 7 68888999999999999999998887
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 142 HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 142 ~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
+. +++.+++.|++.+...+...+++.|..+++++.|+...+..+.+.++|..++|.+++.+.+..|||+.|++.++..
T Consensus 109 ~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~ 186 (491)
T 4aps_A 109 SA--LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGM 186 (491)
T ss_dssp TH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 74 3456788899999888889999999986543457888888999999999999999999999999999999877665
Q ss_pred HHHHHHHh-cccCCCC----CCcc--hhhhhHHHHHH-------------------------------------------
Q 041017 222 GLLILVGI-LLNEPQV----PDFN--YKQVNLKFLDA------------------------------------------- 251 (499)
Q Consensus 222 ~~~~~~~~-~~~e~~~----~~~~--~~~~~~~~~~~------------------------------------------- 251 (499)
++..+..+ ..|+..+ .+++ .+++.++..+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (491)
T 4aps_A 187 FIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFA 266 (491)
T ss_dssp HHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHH
Confidence 55433222 2222111 1110 01100110000
Q ss_pred --HHHHH--HHccCcc--hhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041017 252 --GKAMW--TTLKFPL--VWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSL 325 (499)
Q Consensus 252 --~~~~~--~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~ 325 (499)
.++.. ...+++. .+...+..++............+.+..+. .+.+....+.+.....++.+++..+.+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 343 (491)
T 4aps_A 267 WMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER---VDSSWFPVSWFQSLNPLFIMLYTPFFAWLW 343 (491)
T ss_dssp HHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS---CCCSSSCSGGGTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH---hccCccCHHHHhccchHHHHHHHHHHHHHH
Confidence 00000 0011111 11111111111111111111111222222 333323334444555566666677777777
Q ss_pred CCCCchhHHH-----HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHH
Q 041017 326 KDYPFQDVLF-----WAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGT 400 (499)
Q Consensus 326 ~~~~~r~~l~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~ 400 (499)
||+++|+... .+.++.+++.+.. ...............+.......+.++..+....+..++..|..|++.+|+
T Consensus 344 ~r~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 422 (491)
T 4aps_A 344 TAWKKNQPSSPTKFAVGLMFAGLSFLLM-AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQ 422 (491)
T ss_dssp HHTTTC---CHHHHHHHHHHHHHHHTTT-HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSS
T ss_pred HHHhccCCCchHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence 7777664433 4444444332211 111100000000111222223334445545545556788999999999999
Q ss_pred HHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 401 FFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 401 ~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
++|+.+...++|..++|.+++.+.+
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998877654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-26 Score=227.92 Aligned_cols=343 Identities=13% Similarity=0.081 Sum_probs=234.3
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+..+++........+. +.+++|.|+++.+++.+...++..+ +|++|+++||+ +||+.++.+..+..++...++
T Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHH
Confidence 3444444455555554 4668999999999999999999876 89999999997 566777888888888888888
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHH
Q 041017 137 MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216 (499)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~ 216 (499)
++++++. ++..+++.+++.+...+...+++.|..+ +++|++.++..+.+.++|..+++.+++++.+..|||+.|++
T Consensus 84 ~~~~~~~--l~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 84 TTSSLTV--LIAASAMQGMGTGVGGVMARTLPRDLYE--RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HhccHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 8887664 4557788899999888888999999885 36899999999999999999999999999998899999998
Q ss_pred HHHHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCC
Q 041017 217 MTIPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAG 295 (499)
Q Consensus 217 ~a~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (499)
.++..++..+ ..+++||++++++++++.. +..++.+|+|+++...+..++............+.+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 229 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVDAPRTRLL-------TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV--- 229 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTTCCCCCTT-------TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH---
T ss_pred HHHHHHHHHHHHHHHCcccCCCCcccccHH-------HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 8877766544 4556788765443211110 1123345566666555444443322111111111222221
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|+++.+.+.+.....++.+++..+.+++.||.+++ ...+........+........ . .++.+.......+.+
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~l~g 302 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-G----VMNVWTLLVPAALFF 302 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-H----HHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-c----cccHHHHHHHHHHHH
Confidence 567788888888888899999999999998887652 222222212211111111000 0 011122222333444
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+..+....+..++..|..| +.+|+++|+.+...++|..++|.+.|.+.+..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 303 FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5555545555678888888 899999999999999999999999998877644
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-26 Score=231.99 Aligned_cols=370 Identities=13% Similarity=0.104 Sum_probs=204.7
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHH---HHHHhccchHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSM---LLLSMHEKLHL 143 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~---~~~~~~~~~~~ 143 (499)
....+.|+++++|+|+++.|++.+...++..+ +|++|+++||+ +||+.++++..+..++. ..+++.+....
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888999999999999999998876 89999999997 45555665555443321 11122211100
Q ss_pred HHHHHHHHHHHhHHHH----HHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHH
Q 041017 144 VFAVSALTASSAGIAI----ADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTI 219 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~----~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~ 219 (499)
.....+.+.+++.+. ......++..|. +++++...+..+.+.++|..++|.+++++.+ .+||+.|++.++
T Consensus 102 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~ 175 (417)
T 2cfq_A 102 -NILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG 175 (417)
T ss_dssp -TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 001112222222221 222223333222 2345666777777778999999999998886 589999988766
Q ss_pred HHHHHHHHHhccc-CCCCCCc-chhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCC
Q 041017 220 PAGLLILVGILLN-EPQVPDF-NYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPS 297 (499)
Q Consensus 220 ~~~~~~~~~~~~~-e~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 297 (499)
..++..+..++.| |+++..+ ++++++++.+...++.++.+++|+++...+..+.....+..+....+.+.....+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (417)
T 2cfq_A 176 CALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE 255 (417)
T ss_dssp TTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 6444433334444 4322110 0000000000112334567788887665544332221111110111112222110011
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHH
Q 041017 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMV 377 (499)
Q Consensus 298 ~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (499)
.+....+....+..++.+++..+.+++.||+++|+.+..+.++.++..+. ... .++....+....+..+.
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-SSF---------ATSALEVVILKTLHMFE 325 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HTT---------CCSHHHHHHHTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH-HHH---------hccHHHHHHHHHHHHHH
Confidence 23345566667777788888999999999999999887766555543211 111 11111111122222333
Q ss_pred HHhhhhHHHHHHHhhCCCChhHHHHHH-HHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHh
Q 041017 378 GQLKWMPLLVLSSRLCPSGIEGTFFAL-LMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIF 456 (499)
Q Consensus 378 ~~~~~~p~~~~~~~~~p~~~~g~~~gl-~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~ 456 (499)
......+...+..|..|++.+|+.+++ ++...++|..++|.++|.+.+..|+ ...+.+.+++.+++.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHH
Confidence 333333446788999999999999999 4778889999999999998886542 1223344444455544433
Q ss_pred -hcCCCCCCCC
Q 041017 457 -LVPRGDPDTS 466 (499)
Q Consensus 457 -~lp~~~~~~~ 466 (499)
+.|++++...
T Consensus 398 ~~~~~~~~~~~ 408 (417)
T 2cfq_A 398 FTLSGPGPLSL 408 (417)
T ss_dssp TSSCCSCTTCS
T ss_pred hhhcCCCchHH
Confidence 4565544443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=197.32 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=123.1
Q ss_pred hhhHHHHhhhccC------CChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc-
Q 041017 68 RVGTQYYMKDVQK------VQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE- 139 (499)
Q Consensus 68 ~~~~~~~l~~~~g------~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~- 139 (499)
....+.|+++++| +|+.+.|++.+++.++..+ .|+.|+++||+ .+||+.++++.++.+++.+.+++++
T Consensus 32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~~~~~~~~~~~~~~~~~~~~ 107 (524)
T 2xut_A 32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTILWLSLIYCVGHAFLAIFEH 107 (524)
T ss_dssp HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445567788899 9999999999999998876 88999999985 1577788888888888888888887
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHH---HHHHHHHHHHHHHHHHhHhhcccChhHHHHH
Q 041017 140 KLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSL---CSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216 (499)
Q Consensus 140 ~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~---~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~ 216 (499)
+.+. ++..+++.|++.+...+...+++.|..++ ++|++..+. .+.+.++|.+++|.+++.+.+..|||+.|++
T Consensus 108 ~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 108 SVQG--FYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp CHHH--HHHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred cHHH--HHHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 7664 34567888999888888889999998853 567655555 8889999999999999999998999999998
Q ss_pred HHHHHHHHHHH
Q 041017 217 MTIPAGLLILV 227 (499)
Q Consensus 217 ~a~~~~~~~~~ 227 (499)
.++..++..+.
T Consensus 184 ~~~~~~~~~~~ 194 (524)
T 2xut_A 184 PGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766554333
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=126.06 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=114.4
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHH-HHHHHHHhccchHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGV-FSMLLLSMHEKLHL 143 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~-~~~~~~~~~~~~~~ 143 (499)
......+.++++.+|.++.+.+++.+...++..+ .++.|+++||+. .+||+.++.+..+.. ++.+.+.+.++...
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---RGNRGATGVFFMTLVTIATIVYWMNPAGNP 346 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTCHHHHHHHHHHHHHHHHHHTTSCCTTCH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHhcccCH
Confidence 3445666788877999999999998888887776 788999999851 145555555555544 56666665543222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHH-HHHHHHHHHhHhhcccChhHHHHHHHHHHH
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAI-GALIGYSISGIFVHLIGPKGVFGLMTIPAG 222 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~-G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~ 222 (499)
.......++.+++.+...+...+++.|..+ +++|++++++.+....+ |..+++.+.|.+.+..||+..|++.++..+
T Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 347 TVDMICMIVIGFLIYGPVMLIGLHALELAP--KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 424 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 223334455666666666666778888774 36799999999999999 999999999999999999999988777666
Q ss_pred HHHHHH
Q 041017 223 LLILVG 228 (499)
Q Consensus 223 ~~~~~~ 228 (499)
+..+..
T Consensus 425 ~~~~~~ 430 (451)
T 1pw4_A 425 LAVILL 430 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=110.98 Aligned_cols=145 Identities=14% Similarity=0.015 Sum_probs=106.5
Q ss_pred hhhHHHH-hhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHH
Q 041017 68 RVGTQYY-MKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVF 145 (499)
Q Consensus 68 ~~~~~~~-l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 145 (499)
....+.| +++.+|.++.+.+...+...+...+ .++.|+++||+ +||+.+..+.++..++.+.+.+.++....
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 351 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGGHVGL- 351 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHCCHHHHH-
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHcCCcHHH-
Confidence 3455566 7877899999999998888777766 88899999997 56777778888877777777777665421
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhHHHHHHHHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKGVFGLMTIPAGLL 224 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~~~a~~~~~~ 224 (499)
...++.+++.+...+...++..|..+ ++++...++.. ...+|..++|.+.|.+.+..| ++..|.+.++..++.
T Consensus 352 --~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 352 --IALTLCSAFMSIQYPTIFSLGIKNLG---QDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp --HHHHHHHHHHTTHHHHHHHHHHSSCG---GGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 22345556666666666677666654 33777777666 566999999999999999988 998888765544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.9e-10 Score=113.07 Aligned_cols=159 Identities=11% Similarity=0.047 Sum_probs=104.7
Q ss_pred HHHHhhhccC---CChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 71 TQYYMKDVQK---VQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 71 ~~~~l~~~~g---~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
.+.|+++.++ .+..+.+...++..+...+ .++.|+++||+ +||+.++.+..+.+++.+.+++.++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 315 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATSALEV-- 315 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCCSHHHH--
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhccHHHH--
Confidence 4445554444 2344556666655555554 77899999997 56667777777777776666666665432
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHH-HHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHH
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSL-CSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLI 225 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~-~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~ 225 (499)
+...++.+++.+.......+++.|..+ ++.|+..++. .+....+|..++|.++|.+.+..|++..|.+.++..++..
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~ 393 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQFE--VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 222333444444444445667777764 3578888888 4778889999999999999998889888888777766554
Q ss_pred H-HHhcccCCCCCC
Q 041017 226 L-VGILLNEPQVPD 238 (499)
Q Consensus 226 ~-~~~~~~e~~~~~ 238 (499)
+ ..+..||+++.+
T Consensus 394 ~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 394 LISVFTLSGPGPLS 407 (417)
T ss_dssp HHHTTSSCCSCTTC
T ss_pred HHHHhhhcCCCchH
Confidence 3 344567655443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-08 Score=103.22 Aligned_cols=124 Identities=12% Similarity=0.008 Sum_probs=95.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKD-YPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGI 373 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 373 (499)
++|+|..+.|++.....++..++.++.|++.|| +|+|+.+..+.++.++..+.. .. .++....+....+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~l 117 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL-AL---------PFGASALFGSIIL 117 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH-HS---------CCSTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-HH---------hhhHHHHHHHHHH
Confidence 378999999999999999999999999999999 899999988877776654321 11 1122222233344
Q ss_pred HHHHHHhhhhHHHHHHHhhCCCCh--hHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 374 SRMVGQLKWMPLLVLSSRLCPSGI--EGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 374 ~~~~~~~~~~p~~~~~~~~~p~~~--~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
.++..+....+..+++.|.+|++. |++.+++++...++|..++|.+++.+.+..|
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555555555556788999999988 8888999999999999999999999998765
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.7e-09 Score=102.49 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=107.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.|+.+.|++.....++..++.++.|++.||+|+|+.+..+.+...+..+... .. ++....+....+.+
T Consensus 30 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~---------~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TT---------SSLTVLIAASAMQG 99 (375)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-Hh---------ccHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999888777666543211 11 11122222334445
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHH-H
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLC-V 454 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~-~ 454 (499)
+..+.......+++.|..|+++|++.+++.+...++|..++|.+++.+.+..|+ ...+.+.++..++..+ .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW--------RACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH--------HHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH--------HHHHHHHHHHHHHHHHHH
Confidence 555555555568889999999999999999999999999999999988876542 2233333444444433 3
Q ss_pred HhhcCCCCCC
Q 041017 455 IFLVPRGDPD 464 (499)
Q Consensus 455 ~~~lp~~~~~ 464 (499)
.+.+||++++
T Consensus 172 ~~~~~~~~~~ 181 (375)
T 2gfp_A 172 ARWMPETRPV 181 (375)
T ss_dssp CCSSCCCSTT
T ss_pred HHHCcccCCC
Confidence 3466776544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.9e-08 Score=101.45 Aligned_cols=122 Identities=9% Similarity=-0.032 Sum_probs=90.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHH
Q 041017 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDY-PFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRM 376 (499)
Q Consensus 298 ~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~-~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (499)
+|+.+.|++.....++..++.++.|++.||+ |+|+.+..+.++.++..+.. .+. ..+....+....+.++
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~l~g~ 121 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL-AIF--------EHSVQGFYTGLFLIAL 121 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH-HHT--------SSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHh--------cccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 99999888777666643321 111 1022222333345555
Q ss_pred HHHhhhhHHHHHHHhhCCCChhHHHHHH---HHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 377 VGQLKWMPLLVLSSRLCPSGIEGTFFAL---LMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 377 ~~~~~~~p~~~~~~~~~p~~~~g~~~gl---~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
..+....+..+++.|.+|++.|++..+. .+...++|..++|.+++.+.+..|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 122 GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG 176 (524)
T ss_dssp HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5565555667889999999998755444 888999999999999998887544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-07 Score=95.95 Aligned_cols=164 Identities=16% Similarity=0.099 Sum_probs=104.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhccc-------cc-CCCchhhHHHH
Q 041017 299 SQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNL-------KF-GIPDFVALVID 370 (499)
Q Consensus 299 s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~-------~~-~~~~~~~~~~~ 370 (499)
++...|++.+...+|.++|+++.|++.||+|||+.+.++.++..+..+........... .. ..++....+..
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 34556777777889999999999999999999999998887777654432111000000 00 01122222233
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHH
Q 041017 371 EGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRIT 450 (499)
Q Consensus 371 ~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li 450 (499)
=.+.++..+.......++++|.+|++.|+...++.+.....|..+++.++.......+....+.........+..+..++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 34455555555555678999999999999999999999999988888887777665443322222233333334444455
Q ss_pred HHHHHhhcCCCC
Q 041017 451 PLCVIFLVPRGD 462 (499)
Q Consensus 451 ~l~~~~~lp~~~ 462 (499)
.+...+++||+.
T Consensus 213 ~~~~~~~~peSp 224 (491)
T 4gc0_A 213 FLMLLYTVPESP 224 (491)
T ss_dssp HHHHGGGSCCCH
T ss_pred hhhhhhcCCCCh
Confidence 555556888863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.19 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.2e-27 Score=243.24 Aligned_cols=370 Identities=11% Similarity=0.009 Sum_probs=237.2
Q ss_pred hhccchhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchH
Q 041017 42 TEMHWSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPY 120 (499)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ 120 (499)
++++|.++..+++.+ +...++....+... ++++ ++|+|++|+|++.+++.+++.+ +|++|+++||+ +||+.
T Consensus 20 ~~~~w~i~~~~~~~~-~~~~~~~~~~~~~~-p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~r~~ 91 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGY-AAYYLVRKNFALAM-PYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVF 91 (447)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHTSHHHHH-HHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHH
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHH
Confidence 334677767676666 34444333344454 4665 5899999999999999999887 89999999997 68888
Q ss_pred HHHHhHHHHHHHHHHHhccchH--HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHH
Q 041017 121 FILAGCLGVFSMLLLSMHEKLH--LVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGY 198 (499)
Q Consensus 121 ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~ 198 (499)
++.+.++.+++.+++++++... ...++..+++.+++.+...+...+++.|..+ +++|++.+++.+.+..+|.++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~i~~ 169 (447)
T d1pw4a_ 92 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGIPP 169 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--hhcccccccccccccchhhhhhh
Confidence 9899999888888887765321 1134567788889888888888889998874 46899999999999999999999
Q ss_pred HHHhHhhcc-cChhHHHHHHHHHHHHH-HHHHhcccCCCCCCcch-----h-hhh----HHHHH----HHHHHHHHccCc
Q 041017 199 SISGIFVHL-IGPKGVFGLMTIPAGLL-ILVGILLNEPQVPDFNY-----K-QVN----LKFLD----AGKAMWTTLKFP 262 (499)
Q Consensus 199 ~l~g~l~~~-~gw~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~-----~-~~~----~~~~~----~~~~~~~~l~~~ 262 (499)
.+++.+... .+||+.|++.++..++. ++.+++.+|+++..... + +.. ++.++ ........+++|
T Consensus 170 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (447)
T d1pw4a_ 170 LLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNK 249 (447)
T ss_dssp HHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCH
T ss_pred hhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCc
Confidence 998877664 47999998887777665 33445555554332110 0 000 00000 011234456677
Q ss_pred chhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 041017 263 LVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSG 342 (499)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~ 342 (499)
.++......++............+.+.. +..+++....+.......++.+++..+.+++.||.++++..........
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 326 (447)
T d1pw4a_ 250 LLWYIAIANVFVYLLRYGILDWSPTYLK---EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 326 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBT---TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhhhhhcchhhhhhhcc---cccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHH
Confidence 7666554444332221111111111222 2378888888888888888888888888888888776543333222222
Q ss_pred HHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhH-HHhHHHHHH
Q 041017 343 LSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAG-VLSSSWGGG 421 (499)
Q Consensus 343 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg-~~ig~~l~g 421 (499)
+........... ...+.+.......+.++...........+..|.+|++.+|++.|+.+.+.+++ ..++|.+.|
T Consensus 327 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g 401 (447)
T d1pw4a_ 327 LVTIATIVYWMN-----PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 401 (447)
T ss_dssp HHHHHHHHTTSC-----CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111111100 01122222222233333333334444577889999999999999999999885 566899999
Q ss_pred HHHHHhCC
Q 041017 422 LLLHILKV 429 (499)
Q Consensus 422 ~l~~~~g~ 429 (499)
.+.+..|+
T Consensus 402 ~~~~~~g~ 409 (447)
T d1pw4a_ 402 YTVDFFGW 409 (447)
T ss_dssp HHHHSSCS
T ss_pred HHHHHhCh
Confidence 99987763
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=5.3e-25 Score=219.27 Aligned_cols=348 Identities=13% Similarity=0.077 Sum_probs=204.5
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
......+.|++|++|+|++++|++.++..++..+ +|++|+++||+ +||+.++++.....++...+...++....
T Consensus 25 ~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-----grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T d1pv7a_ 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----TTCTHHHHHHHHHHHTHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3444556678888999999999999999999886 99999999997 56667777777777776666665543321
Q ss_pred H--HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHH
Q 041017 145 F--AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAG 222 (499)
Q Consensus 145 ~--~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~ 222 (499)
. .+....+.+.+.+...........+...++.+++....+........|..+++.+++.+.+. +|+..+........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~ 178 (417)
T d1pv7a_ 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCAL 178 (417)
T ss_dssp HTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHH
Confidence 1 11222222222222222222222222221123455566777778888999999999888765 45555555444444
Q ss_pred HH-HHHHhcccCCCCCCcchhhhhH-HHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCCh
Q 041017 223 LL-ILVGILLNEPQVPDFNYKQVNL-KFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQ 300 (499)
Q Consensus 223 ~~-~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 300 (499)
+. .+..+..+|++...++.+++++ +.+.......+.++++..+......+...............+........+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (417)
T d1pv7a_ 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT 258 (417)
T ss_dssp HHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccch
Confidence 43 4455566666554432211100 000011122333444443333222211111100000000011111111133344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHh
Q 041017 301 ETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQL 380 (499)
Q Consensus 301 ~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (499)
...+.......++..++..+.+++.||.++|+.+..+.++.++..+.. .. .++.+.......+.++..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~l~g~~~~~ 328 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS-SF---------ATSALEVVILKTLHMFEVPF 328 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HT---------CCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcc-cc---------ccccchhhHHHHHHHHHHHH
Confidence 555666677788888999999999999999999888777666643221 11 22333333344455565566
Q ss_pred hhhHHHHHHHhhCCCChhHHHHHHHHH-HHhhHHHhHHHHHHHHHHHhCC
Q 041017 381 KWMPLLVLSSRLCPSGIEGTFFALLMS-IDNAGVLSSSWGGGLLLHILKV 429 (499)
Q Consensus 381 ~~~p~~~~~~~~~p~~~~g~~~gl~~~-~~~lg~~ig~~l~g~l~~~~g~ 429 (499)
...+..+++.|.+|++.||+.+|+... ...+|..++|.++|.+.+..|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 666667889999999999999998654 5668999999999999998874
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=4.4e-11 Score=117.07 Aligned_cols=149 Identities=12% Similarity=0.086 Sum_probs=111.2
Q ss_pred cCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHHHHHHHHHHhHH
Q 041017 79 QKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFAVSALTASSAGI 157 (499)
Q Consensus 79 ~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 157 (499)
.+.+....+...+...+...+ .++.|.+.||. +||+.+..+..+..++.+.+.+.++.+.. ....++.+++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~g~~~ 326 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATSALEV--VILKTLHMFEV 326 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHTCCCHHHH--HHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhccc-----ccccchhhhHHHHHHhhhccccccccchh--hHHHHHHHHHH
Confidence 344455556655555565554 77899999996 67778888888888888888888877643 34446677787
Q ss_pred HHHHHHHHHHHHhhccCCCCcccchHHHH-HHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHH-HHHHhcccCCC
Q 041017 158 AIADVTIDACVAQNSICHPSLASDMQSLC-SLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLL-ILVGILLNEPQ 235 (499)
Q Consensus 158 ~~~~~~~~alv~e~~~~~~~~rg~~~~~~-~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~-~~~~~~~~e~~ 235 (499)
+...+...+++.|..+ ++.|++..+.. +....+|..++|.++|++.+.+|++..|++.++..++. ++..+.+++++
T Consensus 327 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 327 PFLLVGCFKYITSQFE--VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHSC--GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 7777888888888874 46789988875 45678999999999999999999999999888777665 34455566544
Q ss_pred C
Q 041017 236 V 236 (499)
Q Consensus 236 ~ 236 (499)
+
T Consensus 405 ~ 405 (417)
T d1pv7a_ 405 P 405 (417)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=6.2e-11 Score=118.32 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=99.6
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcc--hHHHHHhHHHHHHHHHHHhccchHHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRR--PYFILAGCLGVFSMLLLSMHEKLHLV 144 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk--~~ll~~~~~~~~~~~~~~~~~~~~~~ 144 (499)
....+.++++.++.+..+.+...++..+...+ .++.|+++||+. ||+ ...+....+..++.......+.....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
T d1pw4a_ 269 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF----RGNRGATGVFFMTLVTIATIVYWMNPAGNPT 344 (447)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred hhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcc----ccccccccchhHHHHHHHHHHHHhcccccHH
Confidence 34455678888999999999998888777665 778999999972 222 22222222222222222222222222
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHH-HHHHHHHHHhHhhcccChhHHHHHHHHHHHH
Q 041017 145 FAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAI-GALIGYSISGIFVHLIGPKGVFGLMTIPAGL 223 (499)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~-G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~ 223 (499)
......++.+++.+........+..|..+ ++.|+.++|+.+...++ |.+++|.+.|++.+..||+..|++.++..++
T Consensus 345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 422 (447)
T d1pw4a_ 345 VDMICMIVIGFLIYGPVMLIGLHALELAP--KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 422 (447)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 22334455566655555666677788764 36799999998877666 5677899999999999999998877666555
Q ss_pred H
Q 041017 224 L 224 (499)
Q Consensus 224 ~ 224 (499)
.
T Consensus 423 ~ 423 (447)
T d1pw4a_ 423 A 423 (447)
T ss_dssp H
T ss_pred H
Confidence 4
|