Citrus Sinensis ID: 041026

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
GKVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNTA
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHcHHHcccHHHHHHHHHcccccEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHEHHcccHHHHHHHHHHcHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHEcccccccHHHHHHHHccccEEEEcccc
Coil and Loop (DISEMBL)
gkvlnlvhlndttnksplSLAIEMENTDVLEYILRSlpsgiswssgkspfSLLDVAAKYGHGEISAKIAQYYPffinktnnqgdtplhcAARAGKLNTATVLVDFakhipstsqppvdLLRMENAMGNTVLREALFMLGRVNVRRTNTA
Flexible Loop (DISEMBL)
gkvlnlvhlndttnksplslAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHipstsqppvdLLRMENAMGNTVLREAlfmlgrvnvrrtnta
Low Complexity Region (SEG)
GKVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNTA
Disordered region (IsUnstruct)
******V**********LSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPS*****VDLLRMENAMGNTVLREALFMLGRVNV******
Disordered Region (DISOPRED)
GKVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT*
Disordered Region (DISEMBL)
GKVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNTA
Disordered Region (DISPRO)
GKVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GKVLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.577	0.043	0.296	0.0006

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 14  NKSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYY 72
           +++PL ++  +   D+++ +L+   S   + +SG +P  L   AA+ GH +++A +  + 
Sbjct: 482 DQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHL---AAREGHEDVAAFLLDHG 538

Query: 73  PFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
              ++ T  +G TPLH AA+ GKL  A++L+
Sbjct: 539 AS-LSITTKKGFTPLHVAAKYGKLEVASLLL 568

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.
Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
224107080	229	predicted protein [Populus trichocarpa]	0.570	0.371	0.4	8e-08
224106698	703	predicted protein [Populus trichocarpa]	0.570	0.120	0.406	2e-07
242033049	556	hypothetical protein SORBIDRAFT_01g00890	0.536	0.143	0.409	3e-07
224106702	428	predicted protein [Populus trichocarpa]	0.570	0.198	0.383	5e-07
115484491	191	Os11g0182500 [Oryza sativa Japonica Grou	0.503	0.392	0.4	6e-07
224149783	222	predicted protein [Populus trichocarpa]	0.563	0.378	0.4	7e-07
224142131	227	predicted protein [Populus trichocarpa]	0.563	0.370	0.4	8e-07
413933144	567	putative ankyrin repeat domain family pr	0.536	0.141	0.409	2e-06
224142133	456	predicted protein [Populus trichocarpa]	0.604	0.197	0.384	2e-06
147767511	584	hypothetical protein VITISV_042010 [Viti	0.557	0.142	0.397	3e-06

>gi|224107080|ref|XP_002333573.1| predicted protein [Populus trichocarpa] gi|222837222|gb|EEE75601.1| predicted protein [Populus trichocarpa]

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%)

Query: 51  SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP 110
           SLL VAA +G   ++  +  ++P  I + N  GD  LH AARAG+ +T   LV   K  P
Sbjct: 79  SLLHVAASHGSEGVTQLLCHHFPLLITRKNFLGDNALHLAARAGRFDTIQNLVKHVKIDP 138

Query: 111 STSQPPVDLLRMENAMGNTVLREAL 135
             +     LLRM+N  GNT L +A+
Sbjct: 139 HKTLELASLLRMKNNKGNTPLHDAV 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106698|ref|XP_002333641.1| predicted protein [Populus trichocarpa] gi|222837929|gb|EEE76294.1| predicted protein [Populus trichocarpa]

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 51  SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP 110
           SLL V+A  G   ++  + Q++P  + + N   DT LH AA AG+L TATVL++ AK   
Sbjct: 83  SLLHVSASNGSKHVTELLLQHFPLLMMRKNFHDDTALHLAAGAGQLGTATVLINKAKGHG 142

Query: 111 STSQPPVDLLRMENAMGNTVLREALF 136
             S  P + L M+N  GNT L +A+ 
Sbjct: 143 GASHFP-NFLEMKNDRGNTALHDAVI 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242033049|ref|XP_002463919.1| hypothetical protein SORBIDRAFT_01g008900 [Sorghum bicolor] gi|241917773|gb|EER90917.1| hypothetical protein SORBIDRAFT_01g008900 [Sorghum bicolor]

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 53  LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPST 112
           L +AA +GH E + ++       +   NN GDTPLH AA+AGKL  A +LV+ A   P  
Sbjct: 46  LHLAALHGHAEFAGEVLDMNEELLVAQNNDGDTPLHLAAKAGKLEVARLLVNRALAWPQD 105

Query: 113 SQPPVDLLRMENAMGNTVLREAL 135
            + P   L M N  G+T L EA+
Sbjct: 106 KKSP---LIMTNKAGDTALHEAV 125

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106702|ref|XP_002333642.1| predicted protein [Populus trichocarpa] gi|222837930|gb|EEE76295.1| predicted protein [Populus trichocarpa]

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 51  SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP 110
           SLL V+A++G  +++  + Q++P  + + N   DT LH AA AGKL T T L++ AK   
Sbjct: 83  SLLHVSARHGSKDVTELLLQHFPLLMTRKNFHKDTALHLAAGAGKLGTTTALINKAKGYL 142

Query: 111 STSQPPVDLLRMENAMGNTVLREALF 136
             S      L M+N  GNT L +A+ 
Sbjct: 143 GASDFSY-FLEMKNDRGNTALHDAVL 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115484491|ref|NP_001065907.1| Os11g0182500 [Oryza sativa Japonica Group] gi|108864071|gb|ABA91802.2| expressed protein [Oryza sativa Japonica Group] gi|113644611|dbj|BAF27752.1| Os11g0182500 [Oryza sativa Japonica Group] gi|215695521|dbj|BAG90712.1| unnamed protein product [Oryza sativa Japonica Group] gi|222615633|gb|EEE51765.1| hypothetical protein OsJ_33202 [Oryza sativa Japonica Group]

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 15/90 (16%)

Query: 51  SLLDVAAKYGHGEISAKIAQYYPFFI------NKTNNQGDTPLHCAARAGKLNTATVLVD 104
           ++L VAA+ GHGE+   I + Y  FI      ++ N+  DTPLHCAARAG   T T+LV+
Sbjct: 77  TILHVAAEKGHGEL---IQELYHRFIRDNSLLSRRNSAMDTPLHCAARAGHAGTVTILVN 133

Query: 105 FAKHIPSTSQPPVDLLRMENAMGNTVLREA 134
            A+          ++L  +NA G+T L  A
Sbjct: 134 LAQDCEE------NILGCQNAAGDTALHMA 157

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224149783|ref|XP_002336863.1| predicted protein [Populus trichocarpa] gi|222837030|gb|EEE75409.1| predicted protein [Populus trichocarpa]

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 51  SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP 110
           SLL VAA +G   ++  +  ++P  I + N  GD  LH AARAG+ +T   LV   K I 
Sbjct: 73  SLLHVAASHGGEGVTQLLCHHFPLLITRKNFLGDNALHLAARAGRFDTIQNLVKHEK-IH 131

Query: 111 STSQPPVDLLRMENAMGNTVLREAL 135
             ++    LLRM N  GNT L +A+
Sbjct: 132 HRTRELASLLRMMNNKGNTPLHDAV 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142131|ref|XP_002324412.1| predicted protein [Populus trichocarpa] gi|222865846|gb|EEF02977.1| predicted protein [Populus trichocarpa]

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 51  SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP 110
           SLL VAA +G   ++  +  ++P  I + N  GD  LH AARAG+ +T   LV   K I 
Sbjct: 78  SLLHVAASHGSEGVTQLLCHHFPLLITRRNFLGDNALHLAARAGRFDTIQNLVKHVK-IH 136

Query: 111 STSQPPVDLLRMENAMGNTVLREAL 135
             +     LLRM+N  GNT L +A+
Sbjct: 137 HRTLELASLLRMKNNKGNTPLHDAV 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413933144|gb|AFW67695.1| putative ankyrin repeat domain family protein [Zea mays]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 53  LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPST 112
           L +AA +GH E + ++       +   N  GDTPLH AA+AGKL  A +LV+ A   P  
Sbjct: 57  LHLAALHGHAEFAGEVLGMNEELLVIRNGDGDTPLHLAAKAGKLEVARLLVNRAIAWPED 116

Query: 113 SQPPVDLLRMENAMGNTVLREAL 135
            + P   L M N  GNT L EA+
Sbjct: 117 KKSP---LIMTNKAGNTALHEAV 136

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142133|ref|XP_002324413.1| predicted protein [Populus trichocarpa] gi|222865847|gb|EEF02978.1| predicted protein [Populus trichocarpa]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 51  SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP 110
           SLL VAA +G   ++  +  ++P  I + N  GD  LH AAR G+ +T   LV   K I 
Sbjct: 103 SLLHVAASHGSEGVTQLLCHHFPLLITRKNFLGDNALHLAARFGRFDTIQNLVKHVK-IH 161

Query: 111 STSQPPVDLLRMENAMGNTVLREALFMLGRV 141
             +     LLRM+N  GNT L +A+    RV
Sbjct: 162 HRTLELASLLRMKNNKGNTPLHDAVIKGCRV 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767511|emb|CAN64528.1| hypothetical protein VITISV_042010 [Vitis vinifera]

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 51  SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP 110
           + L +A  +GH E++  I    P  I KTN++GDT LH AAR   L+     +D     P
Sbjct: 109 TCLHIAVSFGHHELAKYIVGLCPDLIEKTNSKGDTALHIAARKKDLSFVKFAMD---SCP 165

Query: 111 STSQPPVD-------LLRMENAMGNTVLREALF 136
           S S    D       LLR+ N  GNTVL EAL 
Sbjct: 166 SGSGASRDVENAEHPLLRIVNKEGNTVLHEALJ 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.362	0.089	0.444	5e-06
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.543	0.131	0.376	5.2e-06
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.604	0.168	0.357	5.5e-06
ZFIN|ZDB-GENE-030131-7450	1280	tnks "tankyrase, TRF1-interact	0.664	0.077	0.330	2.1e-05
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.442	0.097	0.388	3.3e-05
UNIPROTKB|E7EQ52	1090	TNKS "Tankyrase-1" [Homo sapie	0.630	0.086	0.323	3.6e-05
UNIPROTKB|F1P1N0	1269	TNKS "Uncharacterized protein"	0.630	0.074	0.323	4.3e-05
MGI|MGI:1341087	1320	Tnks "tankyrase, TRF1-interact	0.630	0.071	0.323	4.5e-05
UNIPROTKB|E1B8R5	1327	TNKS "Uncharacterized protein"	0.630	0.070	0.323	4.5e-05
UNIPROTKB|E2QU22	1327	TNKS "Uncharacterized protein"	0.630	0.070	0.323	4.5e-05

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 24/54 (44%), Positives = 33/54 (61%)

Query:    51 SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
             ++L VAAK GH E+ AKI +  P  ++  N  GDTPLH AA  G +N    ++D
Sbjct:    39 TVLHVAAKLGHRELVAKIIELRPSLLSSRNAYGDTPLHLAALLGDVNIVMQMLD 92

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 32/85 (37%), Positives = 42/85 (49%)

Query:    51 SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP 110
             S+L +AA  GH  I   I   +P  +   N  G+T LH AARAG LN   +LV F     
Sbjct:    74 SILHIAAALGHVHIVEFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFITE-- 131

Query:   111 STSQPPVDLLRMENAMGNTVLREAL 135
             S+S       + +N  G+T L  AL
Sbjct:   132 SSSYDAFIAAKSKN--GDTALHAAL 154

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 34/95 (35%), Positives = 51/95 (53%)

Query:    51 SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF-AKHI 109
             + L +A K G+ E+  KI + +P  ++ TN + DTPLH AAR G  +   ++++  A+ I
Sbjct:    29 TFLHLAVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLESTAESI 88

Query:   110 PSTSQP-PVDL--LRMENAMGNTVLREALFMLGRV 141
              S  +  P DL    M N  G T L  A+ M G V
Sbjct:    89 ESLEETVPNDLKLAEMVNKDGFTPLHCAV-MNGSV 122

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-7450 tnks "tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase" [Danio rerio (taxid:7955)]

 Score = 114 (45.2 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 35/106 (33%), Positives = 56/106 (52%)

Query:     2 KVLNLVHLN--DTT--NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAA 57
             K+ +L ++N  DT   N +PL LA    N +V EY+L    + ++ +  K     L  AA
Sbjct:   774 KLCSLENINCRDTQGRNSTPLHLAAGYNNLEVAEYLLEH-GADVN-AQDKGGLIPLHNAA 831

Query:    58 KYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
              YGH +I+A + +Y    +N T+    TPLH AA+ G+     +L+
Sbjct:   832 SYGHVDIAALLIKYNTC-VNATDKWAFTPLHEAAQKGRTQLCALLL 876

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query:    51 SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIP 110
             ++L +AA  GH ++   I   YP  + K+N+ G+  LH AA AG L     LV F K I 
Sbjct:   133 TMLHLAAAAGHTDLVCYILNAYPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDI- 191

Query:   111 STSQPPV 117
             S ++P V
Sbjct:   192 SCNKPGV 198

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E7EQ52 TNKS "Tankyrase-1" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query:     7 VHLNDTT--NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEI 64
             ++  DT   N +PL LA    N +V EY+L    + ++ +  K     L  AA YGH +I
Sbjct:   591 INCRDTQGRNSTPLHLAAGYNNLEVAEYLLEH-GADVN-AQDKGGLIPLHNAASYGHVDI 648

Query:    65 SAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
             +A + +Y    +N T+    TPLH AA+ G+     +L+
Sbjct:   649 AALLIKYNTC-VNATDKWAFTPLHEAAQKGRTQLCALLL 686

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|F1P1N0 TNKS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 111 (44.1 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query:     7 VHLNDTT--NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEI 64
             ++  DT   N +PL LA    N +V EY+L    + ++ +  K     L  AA YGH +I
Sbjct:   770 INCRDTQGRNSTPLHLAAGYNNLEVAEYLLEH-GADVN-AQDKGGLIPLHNAASYGHVDI 827

Query:    65 SAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
             +A + +Y    +N T+    TPLH AA+ G+     +L+
Sbjct:   828 AALLIKYNTC-VNATDKWAFTPLHEAAQKGRTQLCALLL 865

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0032212 "positive regulation of telomere maintenance via telomerase" evidence=IEA

GO:0043392 "negative regulation of DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0070198 "protein localization to chromosome, telomeric region" evidence=IEA

GO:0070212 "protein poly-ADP-ribosylation" evidence=IEA

GO:0070213 "protein auto-ADP-ribosylation" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

MGI|MGI:1341087 Tnks "tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase" [Mus musculus (taxid:10090)]

 Score = 111 (44.1 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query:     7 VHLNDTT--NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEI 64
             ++  DT   N +PL LA    N +V EY+L    + ++ +  K     L  AA YGH +I
Sbjct:   821 INCRDTQGRNSTPLHLAAGYNNLEVAEYLLEH-GADVN-AQDKGGLIPLHNAASYGHVDI 878

Query:    65 SAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
             +A + +Y    +N T+    TPLH AA+ G+     +L+
Sbjct:   879 AALLIKYNTC-VNATDKWAFTPLHEAAQKGRTQLCALLL 916

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=ISO

GO:0000784 "nuclear chromosome, telomeric region" evidence=ISO

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006471 "protein ADP-ribosylation" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO

GO:0018107 "peptidyl-threonine phosphorylation" evidence=ISO

GO:0032212 "positive regulation of telomere maintenance via telomerase" evidence=ISO

GO:0043392 "negative regulation of DNA binding" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070198 "protein localization to chromosome, telomeric region" evidence=ISO

GO:0070212 "protein poly-ADP-ribosylation" evidence=ISO

GO:0070213 "protein auto-ADP-ribosylation" evidence=ISO

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|E1B8R5 TNKS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query:     7 VHLNDTT--NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEI 64
             ++  DT   N +PL LA    N +V EY+L    + ++ +  K     L  AA YGH +I
Sbjct:   828 INCRDTQGRNSTPLHLAAGYNNLEVAEYLLEH-GADVN-AQDKGGLIPLHNAASYGHVDI 885

Query:    65 SAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
             +A + +Y    +N T+    TPLH AA+ G+     +L+
Sbjct:   886 AALLIKYNTC-VNATDKWAFTPLHEAAQKGRTQLCALLL 923

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0070213 "protein auto-ADP-ribosylation" evidence=IEA

GO:0070212 "protein poly-ADP-ribosylation" evidence=IEA

GO:0070198 "protein localization to chromosome, telomeric region" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043392 "negative regulation of DNA binding" evidence=IEA

GO:0032212 "positive regulation of telomere maintenance via telomerase" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|E2QU22 TNKS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 32/99 (32%), Positives = 51/99 (51%)

Query:     7 VHLNDTT--NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEI 64
             ++  DT   N +PL LA    N +V EY+L    + ++ +  K     L  AA YGH +I
Sbjct:   828 INCRDTQGRNSTPLHLAAGYNNLEVAEYLLEH-GADVN-AQDKGGLIPLHNAASYGHVDI 885

Query:    65 SAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
             +A + +Y    +N T+    TPLH AA+ G+     +L+
Sbjct:   886 AALLIKYNTC-VNATDKWAFTPLHEAAQKGRTQLCALLL 923

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0070213 "protein auto-ADP-ribosylation" evidence=IEA

GO:0070212 "protein poly-ADP-ribosylation" evidence=IEA

GO:0070198 "protein localization to chromosome, telomeric region" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043392 "negative regulation of DNA binding" evidence=IEA

GO:0032212 "positive regulation of telomere maintenance via telomerase" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_646000005 hypothetical protein (229 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSG-ISWSSGKSPFSLLDVAAKYGHGEISAKIA 69
           D   ++PL LA    + +V++ +L +        + G++P   L +AAK GH EI   + 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTP---LHLAAKNGHLEIVKLLL 60

Query: 70  QYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +     +N  +  G+TPLH AAR G L+   +L+ 
Sbjct: 61  EKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLK 94

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISA 66
           V+  D   ++PL LA +  + ++++ +L         +  K   + L +AA+ G+ ++  
Sbjct: 33  VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD--VNARDKDGNTPLHLAARNGNLDV-V 89

Query: 67  KIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
           K+   +   +N  +  G TPLH AA+ G L    +L+
Sbjct: 90  KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 18  LSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFIN 77
           L LA +  N ++++ +L     G   + G +  +L  +AA+ G+ EI  K+   +   +N
Sbjct: 1   LHLAAKNGNLELVKLLLEK---GADVNLGDTDTALH-LAARNGNLEI-VKLLLEHGADVN 55

Query: 78  KTNNQGDTPLHCAARAGKLNTATVLVD 104
             +  G+T LH AAR G L    +L++
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 51  SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
           + L  AA  G  E+   + +     IN+T+  G+T LH AA  G L    +L+
Sbjct: 3   TALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02741	169	hypothetical protein; Provisional	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
PHA03100	480	ankyrin repeat protein; Provisional	99.92
PHA02874	434	ankyrin repeat protein; Provisional	99.92
PHA02736	154	Viral ankyrin protein; Provisional	99.92
KOG0510	929	consensus Ankyrin repeat protein [General function	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
PHA03095	471	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
PHA02946	446	ankyin-like protein; Provisional	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.88
KOG0508	615	consensus Ankyrin repeat protein [General function	99.88
KOG0510	929	consensus Ankyrin repeat protein [General function	99.88
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.88
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02876	682	ankyrin repeat protein; Provisional	99.88
PHA02876	682	ankyrin repeat protein; Provisional	99.88
PHA02917	661	ankyrin-like protein; Provisional	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
PHA02917	661	ankyrin-like protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
PHA02730	672	ankyrin-like protein; Provisional	99.85
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.85
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02795	437	ankyrin-like protein; Provisional	99.84
PHA02730	672	ankyrin-like protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.82
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.77
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.77
PHA02792	631	ankyrin-like protein; Provisional	99.77
PHA02792	631	ankyrin-like protein; Provisional	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.75
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.71
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.71
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.69
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.67
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.66
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.65
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.64
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.64
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.59
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.53
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.53
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.43
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.34
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.32
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.27
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.25
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.22
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.19
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.13
PF13606	30	Ank_3: Ankyrin repeat	99.08
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.05
KOG0522	560	consensus Ankyrin repeat protein [General function	99.04
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.03
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.97
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.96
PF13606	30	Ank_3: Ankyrin repeat	98.94
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.92
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.9
KOG0522	560	consensus Ankyrin repeat protein [General function	98.87
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.85
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.82
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.55
KOG2384	223	consensus Major histocompatibility complex protein	98.49
KOG0511	516	consensus Ankyrin repeat protein [General function	98.47
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.43
KOG2384	223	consensus Major histocompatibility complex protein	98.33
KOG0511	516	consensus Ankyrin repeat protein [General function	98.14
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.98
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.92
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.6
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.39
KOG2505	591	consensus Ankyrin repeat protein [General function	97.2
KOG2505	591	consensus Ankyrin repeat protein [General function	96.98
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.83
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.7
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.69
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.61
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.64

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=8.2e-33  Score=170.80  Aligned_cols=129  Identities=21%  Similarity=0.273  Sum_probs=111.1

Q ss_pred             ccccC-CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            7 VHLND-TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         7 ~~~~d-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      ++.++ .+|+|||||||..|+.+++++|++.. ...++.+|..|+||||.|+..|+.++++.|+.+.++++|..+..|.|
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~-nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T  108 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQP-NVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQT  108 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcC-CCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcc
Confidence            44444 49999999999999999999999622 22478889999999999999999999999998778999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      +||||+..|+.+++.+|++.|     +.+.      .+|..|+||||-|+..|+.+++++|.
T Consensus       109 ~LHyAagK~r~eIaqlLle~g-----a~i~------~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen  109 CLHYAAGKGRLEIAQLLLEKG-----ALIR------IKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             eehhhhcCChhhHHHHHHhcC-----CCCc------ccccccCchhHHHHhccchhhHHHHH
Confidence            999999999999999999999     6666      78888888888888888888888774

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.1e-30  Score=158.88  Aligned_cols=128  Identities=24%  Similarity=0.214  Sum_probs=119.0

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRS-LPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      ++.+|..|+||||.||..|+.++|+.|+.+ +++  ++..+..|.|+||||+..|+.++..+|++ .|+.++.+|..|.|
T Consensus        65 ~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad--vna~tn~G~T~LHyAagK~r~eIaqlLle-~ga~i~~kD~~~qt  141 (226)
T KOG4412|consen   65 PDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD--VNATTNGGQTCLHYAAGKGRLEIAQLLLE-KGALIRIKDKQGQT  141 (226)
T ss_pred             CCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC--cceecCCCcceehhhhcCChhhHHHHHHh-cCCCCcccccccCc
Confidence            456789999999999999999999999998 777  99999999999999999999999999996 58999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||-|+..|..+++++|+..+     +..+      ..|..|+||||.|...|+.+.+.+|-.
T Consensus       142 plHRAAavGklkvie~Li~~~-----a~~n------~qDk~G~TpL~~al~e~~~d~a~lLV~  193 (226)
T KOG4412|consen  142 PLHRAAAVGKLKVIEYLISQG-----APLN------TQDKYGFTPLHHALAEGHPDVAVLLVR  193 (226)
T ss_pred             hhHHHHhccchhhHHHHHhcC-----CCCC------cccccCccHHHHHHhccCchHHHHHHH
Confidence            999999999999999999999     7666      899999999999988899998887754

>PHA02741 hypothetical protein; Provisional

Probab=99.95  E-value=6.3e-27  Score=149.02  Aligned_cols=131  Identities=15%  Similarity=0.077  Sum_probs=116.3

Q ss_pred             cccccccCCCCCCHHHHHHHhCCHHHHHHHHHh------CCCCccccCCCCCCcHHHHHHHhCc----HHHHHHHHHhCC
Q 041026            4 LNLVHLNDTTNKSPLSLAIEMENTDVLEYILRS------LPSGISWSSGKSPFSLLDVAAKYGH----GEISAKIAQYYP   73 (149)
Q Consensus         4 ~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~------~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~   73 (149)
                      .++++.+|..|.||||+|++.|+.++++.|+..      ++.  ++.+|..|.||||+|+..++    .+++++|++ .+
T Consensus        11 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~--in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~-~g   87 (169)
T PHA02741         11 EEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA--LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE-LG   87 (169)
T ss_pred             HHHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh--hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHH-cC
Confidence            456788899999999999999999999998653      344  78889999999999999998    588999994 68


Q ss_pred             cceecccC-CCCcHHHHHHHcCCHHHHHHHHHh-hhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           74 FFINKTNN-QGDTPLHCAARAGKLNTATVLVDF-AKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        74 ~~~~~~~~-~g~tplh~a~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ++++.++. .|+||||+|+..++.+++++|+.. +     ++++      .+|..|.|||++|+..++.+++++|.+
T Consensus        88 adin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g-----~~~~------~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741         88 ADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG-----IDLH------FCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCC------cCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999885 899999999999999999999985 6     6666      789999999999999999999999875

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=157.77  Aligned_cols=94  Identities=19%  Similarity=0.124  Sum_probs=77.2

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHH
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      +.+|.+|.||||+|+..|+.+++++|++.++.  .+..+  +.||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~--~n~~d--~~TpLh~Aa~~g~~eiV~lLL~-~Gadvn~~d~~G~TpL   98 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGAL--KNLLE--NEFPLHQAATLEDTKIVKILLF-SGMDDSQFDDKGNTAL   98 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC--CcCCC--CCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHH
Confidence            45788888888888888888888888888877  55443  5788888888888888888884 5788888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHhh
Q 041026           88 HCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~  106 (149)
                      |+|+..|+.+++++|++.|
T Consensus        99 h~Aa~~g~~eivk~Ll~~g  117 (284)
T PHA02791         99 YYAVDSGNMQTVKLFVKKN  117 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCC
Confidence            8888888888888888887

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=3e-26  Score=155.80  Aligned_cols=125  Identities=14%  Similarity=0.082  Sum_probs=78.9

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCC-CcHHHHHHHhCcHHHHHHHHHhCCcceeccc-CCCCc
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSP-FSLLDVAAKYGHGEISAKIAQYYPFFINKTN-NQGDT   85 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t   85 (149)
                      +.+|..|.||||+|+..|+.+++++|++.+++  ++.++..| .||||+|+..|+.+++++|++..+.   ..| ..|.|
T Consensus        88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad--in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~---~~d~~~g~T  162 (284)
T PHA02791         88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR--LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---TFDLAILLS  162 (284)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc---ccccccCcc
Confidence            44566666666666666666666666666666  55555555 3566666666666666666643211   112 23567


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCH-HHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTV-LREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|++.|+.+++++|+++|     ++++      .++..|.|| ||+|+..|+.+++++|.+
T Consensus       163 pLh~Aa~~g~~eiv~lLL~~g-----Ad~n------~~d~~g~t~~L~~Aa~~~~~e~v~lLl~  215 (284)
T PHA02791        163 CIHITIKNGHVDMMILLLDYM-----TSTN------TNNSLLFIPDIKLAIDNKDLEMLQALFK  215 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-----CCCC------cccCCCCChHHHHHHHcCCHHHHHHHHH
Confidence            777777777777777777766     5555      566677765 777777777777777754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=164.69  Aligned_cols=129  Identities=23%  Similarity=0.154  Sum_probs=110.1

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCC-CCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSG-KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQG   83 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g   83 (149)
                      ..++..|.+|.|+||||+..++.+++++|++++++  +|... ..+.||||+|+.+|+..++++|+ ++|++++.+|.+|
T Consensus        69 ~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad--vn~~gG~l~stPLHWAar~G~~~vv~lLl-qhGAdpt~~D~~G  145 (600)
T KOG0509|consen   69 ESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD--VNAIGGVLGSTPLHWAARNGHISVVDLLL-QHGADPTLKDKQG  145 (600)
T ss_pred             cCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC--ccccCCCCCCCcchHHHHcCcHHHHHHHH-HcCCCCceecCCC
Confidence            45678899999999999999999999999999999  77776 67889999999999999999999 5799999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           84 DTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        84 ~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      .||+|.|++.|+.-+|-+|+..+     ++++      .+|.+|+|||++|+..|....++.|.
T Consensus       146 ~~~lHla~~~~~~~~vayll~~~-----~d~d------~~D~~grTpLmwAaykg~~~~v~~LL  198 (600)
T KOG0509|consen  146 LTPLHLAAQFGHTALVAYLLSKG-----ADID------LRDNNGRTPLMWAAYKGFALFVRRLL  198 (600)
T ss_pred             CcHHHHHHHhCchHHHHHHHHhc-----ccCC------CcCCCCCCHHHHHHHhcccHHHHHHH
Confidence            99999999999999999999998     6666      67777777777777776665444443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=3.4e-26  Score=163.73  Aligned_cols=128  Identities=23%  Similarity=0.235  Sum_probs=115.9

Q ss_pred             cccC-CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            8 HLND-TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         8 ~~~d-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      |... .-+.||||||++.|+..++.+|+++|++  ++.+|.+|.+|+|.|+++++..++-+++.+ +++++.+|.+|+||
T Consensus       105 n~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd--pt~~D~~G~~~lHla~~~~~~~~vayll~~-~~d~d~~D~~grTp  181 (600)
T KOG0509|consen  105 NAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD--PTLKDKQGLTPLHLAAQFGHTALVAYLLSK-GADIDLRDNNGRTP  181 (600)
T ss_pred             cccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC--CceecCCCCcHHHHHHHhCchHHHHHHHHh-cccCCCcCCCCCCH
Confidence            4444 6789999999999999999999999999  999999999999999999999999999954 79999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCcccccccc-CCCCCHHHHHHHcCCHHHHHhhhhC
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMEN-AMGNTVLREALFMLGRVNVRRTNTA  149 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~L~~a  149 (149)
                      ||+|+..|+...+..|+..+     +.+.      .+| .+|.||||+|+..|+..++.+|++|
T Consensus       182 LmwAaykg~~~~v~~LL~f~-----a~~~------~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g  234 (600)
T KOG0509|consen  182 LMWAAYKGFALFVRRLLKFG-----ASLL------LTDDNHGNTPLHWAVVGGNLTAVKLLLEG  234 (600)
T ss_pred             HHHHHHhcccHHHHHHHHhc-----cccc------ccccccCCchHHHHHhcCCcceEehhhhc
Confidence            99999999998899999998     5555      555 9999999999999999999866653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=6.2e-25  Score=157.37  Aligned_cols=125  Identities=18%  Similarity=0.125  Sum_probs=86.3

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHH
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHC   89 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~   89 (149)
                      .+.+|.||||+|+..|+.+++++|++.|++  ++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus        98 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad--~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~  174 (413)
T PHA02875         98 FYKDGMTPLHLATILKKLDIMKLLIARGAD--PDIPNTDKFSPLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLII  174 (413)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHH
Confidence            345677777777777777777777777776  66666677777777777777777777773 466677777777777777


Q ss_pred             HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCC-CCHHHHHHHcCCHHHHHhhhh
Q 041026           90 AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMG-NTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+..|+.+++++|++.|     ++++      ..+..| .||+++|+..++.+++++|.+
T Consensus       175 A~~~g~~eiv~~Ll~~g-----a~~n------~~~~~~~~t~l~~A~~~~~~~iv~~Ll~  223 (413)
T PHA02875        175 AMAKGDIAICKMLLDSG-----ANID------YFGKNGCVAALCYAIENNKIDIVRLFIK  223 (413)
T ss_pred             HHHcCCHHHHHHHHhCC-----CCCC------cCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence            77777777777777776     5555      444444 466667777777777776653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=7.5e-25  Score=156.94  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=93.2

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCC--------------------------------ccccCCCCCCcHHHHH
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSG--------------------------------ISWSSGKSPFSLLDVA   56 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~--------------------------------~~~~~~~~~~~~l~~a   56 (149)
                      .++.+|.||||+|+..|+.+++++|++.|+..                                ..+..+..|.||||+|
T Consensus        30 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  109 (413)
T PHA02875         30 FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA  109 (413)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHH
Confidence            34445666666666666666666666555440                                1122344577888888


Q ss_pred             HHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHH
Q 041026           57 AKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALF  136 (149)
Q Consensus        57 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  136 (149)
                      +..++.+++++|++ .|++++.++..|.||||+|+..|+.+++++|+++|     ++++      .++..|.||||+|+.
T Consensus       110 ~~~~~~~iv~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-----~~~~------~~d~~g~TpL~~A~~  177 (413)
T PHA02875        110 TILKKLDIMKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK-----ACLD------IEDCCGCTPLIIAMA  177 (413)
T ss_pred             HHhCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-----CCCC------CCCCCCCCHHHHHHH
Confidence            88888888888884 57788888888888888888888888888888877     6655      788899999999999


Q ss_pred             cCCHHHHHhhhh
Q 041026          137 MLGRVNVRRTNT  148 (149)
Q Consensus       137 ~~~~~~~~~L~~  148 (149)
                      .|+.+++++|.+
T Consensus       178 ~g~~eiv~~Ll~  189 (413)
T PHA02875        178 KGDIAICKMLLD  189 (413)
T ss_pred             cCCHHHHHHHHh
Confidence            999999998864

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=6.6e-25  Score=139.26  Aligned_cols=126  Identities=17%  Similarity=0.065  Sum_probs=110.1

Q ss_pred             ccCCCCCCHHHHHHHhCCH----HHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHH---HHHHHHhCCcceeccc-
Q 041026            9 LNDTTNKSPLSLAIEMENT----DVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEI---SAKIAQYYPFFINKTN-   80 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---~~~Ll~~~~~~~~~~~-   80 (149)
                      ..+.++.+++|.||+.|+.    +++++|++.+..  ++.++..|+||||+|+..++.+.   +++|+ ..|++++.++ 
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~--~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll-~~Gadin~~d~   91 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL--LHRYDHHGRQCTHMVAWYDRANAVMKIELLV-NMGADINAREL   91 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh--hhccCCCCCcHHHHHHHhCccCHHHHHHHHH-HcCCCCCCCCC
Confidence            3567888999999999998    555667777777  78889999999999999988654   78998 5689999998 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH-hhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           81 NQGDTPLHCAARAGKLNTATVLVD-FAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        81 ~~g~tplh~a~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..|.||||+|+..|+.+++++|++ .+     ++++      .++..|.||||+|+..++.+++++|.+
T Consensus        92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~g-----ad~~------~~d~~g~tpL~~A~~~~~~~iv~~Ll~  149 (166)
T PHA02743         92 GTGNTLLHIAASTKNYELAEWLCRQLG-----VNLG------AINYQHETAYHIAYKMRDRRMMEILRA  149 (166)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhccC-----CCcc------CcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            589999999999999999999996 56     6666      789999999999999999999999875

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=9.9e-25  Score=143.19  Aligned_cols=130  Identities=16%  Similarity=0.178  Sum_probs=113.2

Q ss_pred             ccccccCCCCCCHHHHHHHh--CCHHHHHHHHHhCCCCccccCC-CCCCcHHHHHHHh---CcHHHHHHHHHhCCcceec
Q 041026            5 NLVHLNDTTNKSPLSLAIEM--ENTDVLEYILRSLPSGISWSSG-KSPFSLLDVAAKY---GHGEISAKIAQYYPFFINK   78 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~   78 (149)
                      +.++..|..|.||||+|+..  ++.+++++|++.+++  ++.++ ..|.||||+|+..   ++.+++++|++ .|++++.
T Consensus        42 ~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad--vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~-~gadin~  118 (209)
T PHA02859         42 KFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD--VNFKTRDNNLSALHHYLSFNKNVEPEILKILID-SGSSITE  118 (209)
T ss_pred             HhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC--CCccCCCCCCCHHHHHHHhCccccHHHHHHHHH-CCCCCCC
Confidence            34677899999999999985  489999999999999  88876 5799999998764   47899999994 6999999


Q ss_pred             ccCCCCcHHHHHHH--cCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHH-HHHcCCHHHHHhhhh
Q 041026           79 TNNQGDTPLHCAAR--AGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLRE-ALFMLGRVNVRRTNT  148 (149)
Q Consensus        79 ~~~~g~tplh~a~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~-A~~~~~~~~~~~L~~  148 (149)
                      +|..|.||||+|+.  .++.+++++|++.|     ++++      .+|..|.||||. |+..++.+++++|..
T Consensus       119 ~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g-----adin------~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~  180 (209)
T PHA02859        119 EDEDGKNLLHMYMCNFNVRINVIKLLIDSG-----VSFL------NKDFDNNNILYSYILFHSDKKIFDFLTS  180 (209)
T ss_pred             cCCCCCCHHHHHHHhccCCHHHHHHHHHcC-----CCcc------cccCCCCcHHHHHHHhcCCHHHHHHHHH
Confidence            99999999999886  46899999999999     7777      789999999995 566889999998864

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3e-24  Score=154.75  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=75.1

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHh---------------
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQY---------------   71 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~---------------   71 (149)
                      ++..+.+|.||||.|+..|+.+++++|++.|++  ++..+..|.+|||.|+..|+.+++++|++.               
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~--~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHGAD--INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHH
Confidence            345566677777777777777777777777766  555566666666666666666666666532               


Q ss_pred             -------CCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHH
Q 041026           72 -------YPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVR  144 (149)
Q Consensus        72 -------~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  144 (149)
                             .|++++.++..|.||||+|+..|+.+++++|++.|     ++++      .++..|.||||+|+..++.++++
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g-----ad~n------~~d~~g~tpLh~A~~~~~~~iv~  174 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG-----ADVN------IEDDNGCYPIHIAIKHNFFDIIK  174 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC-----CCCC------CcCCCCCCHHHHHHHCCcHHHHH
Confidence                   12334445556666666666666666666666655     4443      34444444444444444444444


Q ss_pred             hh
Q 041026          145 RT  146 (149)
Q Consensus       145 ~L  146 (149)
                      +|
T Consensus       175 ~L  176 (434)
T PHA02874        175 LL  176 (434)
T ss_pred             HH
Confidence            44

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.3e-24  Score=156.97  Aligned_cols=128  Identities=23%  Similarity=0.286  Sum_probs=101.3

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCC------CcHHHHHHHhCc--HHHHHHHHHhCCcceec
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSP------FSLLDVAAKYGH--GEISAKIAQYYPFFINK   78 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~Ll~~~~~~~~~   78 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..+      .||||.|+..++  .+++++|++ .|++++.
T Consensus       169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~--~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~  245 (480)
T PHA03100        169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD--INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINI  245 (480)
T ss_pred             cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC--ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCC
Confidence            345666777777777777777777777777777  66666666      677777777777  778888884 5788888


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           79 TNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        79 ~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +|..|.||||+|+..|+.+++++|++.|     ++++      .++..|.||+++|+..++.+++++|.+
T Consensus       246 ~d~~g~TpL~~A~~~~~~~iv~~Ll~~g-----ad~n------~~d~~g~tpl~~A~~~~~~~iv~~Ll~  304 (480)
T PHA03100        246 KDVYGFTPLHYAVYNNNPEFVKYLLDLG-----ANPN------LVNKYGDTPLHIAILNNNKEIFKLLLN  304 (480)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCC------ccCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            8888888888888888888888888888     7666      788888899999988888888888764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.2e-24  Score=154.56  Aligned_cols=139  Identities=19%  Similarity=0.199  Sum_probs=117.1

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+++  ++.++..|.||||+|+..++.+++++|++ .|++++..+..|.||
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad--~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~g~~~n~~~~~g~tp  193 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD--VNIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNNGESP  193 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC--CCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCH
Confidence            456788999999999999999999999999999  88899999999999999999999999995 688999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCC--------------------ccccccccCCCCCHHHHHHHcC-CHHHHHh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPP--------------------VDLLRMENAMGNTVLREALFML-GRVNVRR  145 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~--------------------~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~  145 (149)
                      ||+|+..|+.+++++|++.|......+...                    ...++.++..|.||||+|+..+ +.+++++
T Consensus       194 L~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~  273 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDI  273 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHH
Confidence            999999999999999999984321111000                    1234567788888999888865 7788888


Q ss_pred             hhh
Q 041026          146 TNT  148 (149)
Q Consensus       146 L~~  148 (149)
                      |.+
T Consensus       274 Ll~  276 (434)
T PHA02874        274 LLY  276 (434)
T ss_pred             HHH
Confidence            764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.2e-24  Score=136.76  Aligned_cols=132  Identities=14%  Similarity=0.030  Sum_probs=106.1

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC---CccccCCCCCCcHHHHHHHhCcH---HHHHHHHHhCCcceec
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS---GISWSSGKSPFSLLDVAAKYGHG---EISAKIAQYYPFFINK   78 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~~~l~~a~~~~~~---~~~~~Ll~~~~~~~~~   78 (149)
                      .+.+.+|.+|.||||+|++.|+...+........+   ......+..|.||||+|+..++.   +++++|++ .|++++.
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~   86 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME-WGADING   86 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH-cCCCccc
Confidence            45677899999999999999984322221111111   01345688999999999999886   46788884 6899999


Q ss_pred             cc-CCCCcHHHHHHHcCCHHHHHHHHHh-hhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           79 TN-NQGDTPLHCAARAGKLNTATVLVDF-AKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        79 ~~-~~g~tplh~a~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ++ ..|.||||+|+..|+.+++++|+.+ +     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g-----~d~n------~~~~~g~tpL~~A~~~~~~~i~~~Ll~  147 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPG-----VNME------ILNYAFKTPYYVACERHDAKMMNILRA  147 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCC-----CCCc------cccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            98 5899999999999999999999985 5     6666      789999999999999999999998864

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=7.3e-25  Score=160.61  Aligned_cols=134  Identities=25%  Similarity=0.251  Sum_probs=120.1

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHH-hCCcceecccCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQ-YYPFFINKTNNQG   83 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g   83 (149)
                      .+++-.|.+|+||||+||+.|+.+.+..|+..|++  ++.++..+.||||.|+.+|+...++.|++ ..-...+..|..|
T Consensus       264 elv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~--I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g  341 (929)
T KOG0510|consen  264 ELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS--INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG  341 (929)
T ss_pred             HHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc--ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence            57889999999999999999999999999999999  99999999999999999999999999997 3334678899999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           84 DTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        84 ~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .||||.|+++|+..++++|+..|     +....   -...|..|.||||+|++.|+..++++|..
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~~G-----A~~~~---~~e~D~dg~TaLH~Aa~~g~~~av~~Li~  398 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLNKG-----ALFLN---MSEADSDGNTALHLAAKYGNTSAVQKLIS  398 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHhcC-----hhhhc---ccccccCCchhhhHHHHhccHHHHHHHHH
Confidence            99999999999999999999999     54431   00349999999999999999999998853

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=4.6e-25  Score=153.76  Aligned_cols=127  Identities=20%  Similarity=0.216  Sum_probs=115.5

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      +|.......|||..||.-|+.+++++|++++++  ++..|+.|.|+|++|+..|+.+++++|++ .|+++|.++..|+|+
T Consensus       110 VN~tT~TNStPLraACfDG~leivKyLvE~gad--~~IanrhGhTcLmIa~ykGh~~I~qyLle-~gADvn~ks~kGNTA  186 (615)
T KOG0508|consen  110 VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD--PEIANRHGHTCLMIACYKGHVDIAQYLLE-QGADVNAKSYKGNTA  186 (615)
T ss_pred             cccccccCCccHHHHHhcchhHHHHHHHHcCCC--CcccccCCCeeEEeeeccCchHHHHHHHH-hCCCcchhcccCchH
Confidence            445555677999999999999999999999999  99999999999999999999999999995 599999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||.|+.+|+.+++++|+.+|     +.+.       +|..|.|||..|+..|+..++++|.+
T Consensus       187 LH~caEsG~vdivq~Ll~~g-----a~i~-------~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  187 LHDCAESGSVDIVQLLLKHG-----AKID-------VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHhhhhcccHHHHHHHHhCC-----ceee-------ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999999999     5444       78889999999999999999999864

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=4.9e-24  Score=155.20  Aligned_cols=124  Identities=17%  Similarity=0.199  Sum_probs=101.8

Q ss_pred             ccccCCC-CCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            7 VHLNDTT-NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         7 ~~~~d~~-g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      ++.+|.. |.||||+|+..|+.+++++|++.+++  ++..+..|.||||.|+..++.+++++|++ .|++++.+|..|.|
T Consensus       160 in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad--~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~g~T  236 (477)
T PHA02878        160 INMKDRHKGNTALHYATENKDQRLTELLLSYGAN--VNIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKCGNT  236 (477)
T ss_pred             CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence            4566777 99999999999999999999999998  88899999999999999999999999995 68999999999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHhhhcCCCCCCCCccccccccC-CCCCHHHHHHHcCCHHHHHhh
Q 041026           86 PLHCAARA-GKLNTATVLVDFAKHIPSTSQPPVDLLRMENA-MGNTVLREALFMLGRVNVRRT  146 (149)
Q Consensus        86 plh~a~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L  146 (149)
                      |||+|+.. ++.+++++|+++|     ++++      .++. .|.||||+|  .++.+++++|
T Consensus       237 pLh~A~~~~~~~~iv~~Ll~~g-----advn------~~~~~~g~TpLh~A--~~~~~~v~~L  286 (477)
T PHA02878        237 PLHISVGYCKDYDILKLLLEHG-----VDVN------AKSYILGLTALHSS--IKSERKLKLL  286 (477)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcC-----CCCC------ccCCCCCCCHHHHH--ccCHHHHHHH
Confidence            99999975 6899999999998     5554      2332 455555555  3344445444

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=7.6e-24  Score=154.22  Aligned_cols=106  Identities=14%  Similarity=0.133  Sum_probs=91.6

Q ss_pred             HHHHHHHhCCCCccccCCCC-CCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhh
Q 041026           29 VLEYILRSLPSGISWSSGKS-PFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAK  107 (149)
Q Consensus        29 ~~~~ll~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~  107 (149)
                      ++++|++.|++  ++..+.. |.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.| 
T Consensus       149 iv~~Ll~~gad--in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-  224 (477)
T PHA02878        149 ITKLLLSYGAD--INMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG-  224 (477)
T ss_pred             HHHHHHHcCCC--CCccCCCCCCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC-
Confidence            33444444555  5666666 9999999999999999999995 68999999999999999999999999999999999 


Q ss_pred             cCCCCCCCCccccccccCCCCCHHHHHHHc-CCHHHHHhhhh
Q 041026          108 HIPSTSQPPVDLLRMENAMGNTVLREALFM-LGRVNVRRTNT  148 (149)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~-~~~~~~~~L~~  148 (149)
                          ++++      .+|..|.||||+|+.. ++.+++++|.+
T Consensus       225 ----a~in------~~d~~g~TpLh~A~~~~~~~~iv~~Ll~  256 (477)
T PHA02878        225 ----ASTD------ARDKCGNTPLHISVGYCKDYDILKLLLE  256 (477)
T ss_pred             ----CCCC------CCCCCCCCHHHHHHHhcCCHHHHHHHHH
Confidence                7777      7899999999999975 78999998864

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=8.8e-25  Score=139.31  Aligned_cols=131  Identities=22%  Similarity=0.213  Sum_probs=121.0

Q ss_pred             ccccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCC
Q 041026            3 VLNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         3 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      +.+.+|..|+.|+|||.||+.+|++.++++|++.|++  +....+...++|.+|+..|-.++++.|++ .+.++|.-|.+
T Consensus       149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd--p~~lgk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwN  225 (296)
T KOG0502|consen  149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD--PDALGKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWN  225 (296)
T ss_pred             hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCC--hhhhhhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccC
Confidence            4567899999999999999999999999999999999  88888888999999999999999999996 58999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           83 GDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        83 g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |-|||.||++.++.+|++.|+..|     +++.      .++..|++++.+|+..|+..+-++++
T Consensus       226 GgTpLlyAvrgnhvkcve~Ll~sG-----Ad~t------~e~dsGy~~mdlAValGyr~Vqqvie  279 (296)
T KOG0502|consen  226 GGTPLLYAVRGNHVKCVESLLNSG-----ADVT------QEDDSGYWIMDLAVALGYRIVQQVIE  279 (296)
T ss_pred             CCceeeeeecCChHHHHHHHHhcC-----CCcc------cccccCCcHHHHHHHhhhHHHHHHHH
Confidence            999999999999999999999999     8888      89999999999999999985544544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=152.42  Aligned_cols=138  Identities=21%  Similarity=0.215  Sum_probs=111.6

Q ss_pred             cccCCCCCCHHHHHH--HhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhC--cHHHHHHHHHhCCcceecccCCC
Q 041026            8 HLNDTTNKSPLSLAI--EMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYG--HGEISAKIAQYYPFFINKTNNQG   83 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g   83 (149)
                      +..|..|.||||+|+  ..|+.+++++|++.+++  ++..+..|.||||+|+..+  +.+++++|++ .|++++.++..|
T Consensus       100 ~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~~g  176 (480)
T PHA03100        100 NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN--VNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNRYG  176 (480)
T ss_pred             CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccCCC
Confidence            677888888888888  88888888888888888  7788888888888888888  8888888884 578888888888


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCC---------------------C---------ccccccccCCCCCHHHH
Q 041026           84 DTPLHCAARAGKLNTATVLVDFAKHIPSTSQP---------------------P---------VDLLRMENAMGNTVLRE  133 (149)
Q Consensus        84 ~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~---------------------~---------~~~~~~~~~~g~t~l~~  133 (149)
                      .||||+|+..|+.+++++|+++|......+..                     .         ..+++.++..|.||||+
T Consensus       177 ~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~  256 (480)
T PHA03100        177 YTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHY  256 (480)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            88888888888888888888887442211100                     0         24456788999999999


Q ss_pred             HHHcCCHHHHHhhhh
Q 041026          134 ALFMLGRVNVRRTNT  148 (149)
Q Consensus       134 A~~~~~~~~~~~L~~  148 (149)
                      |+..|+.+++++|.+
T Consensus       257 A~~~~~~~iv~~Ll~  271 (480)
T PHA03100        257 AVYNNNPEFVKYLLD  271 (480)
T ss_pred             HHHcCCHHHHHHHHH
Confidence            999999999999865

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=4.2e-23  Score=140.76  Aligned_cols=126  Identities=15%  Similarity=0.154  Sum_probs=109.5

Q ss_pred             ccccCCCCCCHH-HHHHHhCCHHHHHHHHHhCCCCccccC----CCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecc-c
Q 041026            7 VHLNDTTNKSPL-SLAIEMENTDVLEYILRSLPSGISWSS----GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKT-N   80 (149)
Q Consensus         7 ~~~~d~~g~t~l-~~a~~~~~~~~~~~ll~~~~~~~~~~~----~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~   80 (149)
                      +..+|..|.+++ |.|+..|+.+++++|++.|++  ++.+    +..|.||||+|+..++.+++++|++ .|++++.+ +
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd--iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~-~GADVN~~~~  101 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGAD--PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR-YGADVNRYAE  101 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC--ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcCcccC
Confidence            456788887765 556667999999999999999  7765    4589999999999999999999995 69999986 4


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhh
Q 041026           81 NQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRT  146 (149)
Q Consensus        81 ~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  146 (149)
                      ..|.||||+|+..++.+++++|++.|     ++++      .++..|.||+|+|+..++.++++++
T Consensus       102 ~~g~TpLh~Aa~~~~~eivklLL~~G-----Adin------~kd~~G~TpL~~A~~~~~~~~~~~~  156 (300)
T PHA02884        102 EAKITPLYISVLHGCLKCLEILLSYG-----ADIN------IQTNDMVTPIELALMICNNFLAFMI  156 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCC------CCCCCCCCHHHHHHHhCChhHHHHh
Confidence            68999999999999999999999999     8777      7899999999999998877776554

>PHA03095 ankyrin-like protein; Provisional

Probab=99.91  E-value=5.5e-23  Score=149.47  Aligned_cols=126  Identities=18%  Similarity=0.119  Sum_probs=109.6

Q ss_pred             ccCCCCCCHHHHHHHh--CCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcH--HHHHHHHHhCCcceecccCCCC
Q 041026            9 LNDTTNKSPLSLAIEM--ENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHG--EISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      ..|..|.||||+++..  ++.++++.|++.+++  ++.++..|+||||+|+..++.  .++..|+ ..+++++.+|..|.
T Consensus       182 ~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~--~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll-~~g~din~~d~~g~  258 (471)
T PHA03095        182 AVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD--PAATDMLGNTPLHSMATGSSCKRSLVLPLL-IAGISINARNRYGQ  258 (471)
T ss_pred             ccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC--CcccCCCCCCHHHHHHhcCCchHHHHHHHH-HcCCCCCCcCCCCC
Confidence            3477888888888764  677888888888888  888888999999999988864  4677777 46899999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||||+|+..|+.+++++|++.|     ++++      .++..|.|||++|+..|+.++++.|.+
T Consensus       259 TpLh~A~~~~~~~~v~~LL~~g-----ad~n------~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        259 TPLHYAAVFNNPRACRRLIALG-----ADIN------AVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-----CCCc------ccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999999999999     8777      889999999999999999999998764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=5.3e-23  Score=157.70  Aligned_cols=126  Identities=17%  Similarity=0.130  Sum_probs=86.2

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++..|..|.||||+|+..|+.+++++|++.+++  ++.+|..|+||||+|+..|+.+++++|++ .+...+  ...+.+|
T Consensus       551 ~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad--in~~d~~G~TpL~~A~~~g~~~iv~~L~~-~~~~~~--~~~~~~~  625 (823)
T PLN03192        551 PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN--VHIRDANGNTALWNAISAKHHKIFRILYH-FASISD--PHAAGDL  625 (823)
T ss_pred             CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC--CCCcCCCCCCHHHHHHHhCCHHHHHHHHh-cCcccC--cccCchH
Confidence            345566666666666666666666666666665  56666666666666666666666666663 232221  2334566


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||.|+..|+.+++++|+++|     ++++      .+|..|.||||+|+..|+.+++++|.+
T Consensus       626 L~~Aa~~g~~~~v~~Ll~~G-----adin------~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        626 LCTAAKRNDLTAMKELLKQG-----LNVD------SEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HHHHHHhCCHHHHHHHHHCC-----CCCC------CCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            66667777777777777776     6666      899999999999999999999999975

>PHA03095 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.6e-23  Score=149.04  Aligned_cols=128  Identities=16%  Similarity=0.133  Sum_probs=112.5

Q ss_pred             ccccCCCCCCHHHHHHHhC---CHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhC-cHHHHHHHHHhCCcceecccCC
Q 041026            7 VHLNDTTNKSPLSLAIEME---NTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYG-HGEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      ++.++..|.||||+|+..+   +.+++++|++.|++  ++.++..|.||||+|+..+ ..+++++|++ .|++++.++..
T Consensus        40 vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad--in~~~~~g~TpLh~A~~~~~~~~iv~lLl~-~ga~in~~~~~  116 (471)
T PHA03095         40 VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD--VNAPERCGFTPLHLYLYNATTLDVIKLLIK-AGADVNAKDKV  116 (471)
T ss_pred             cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCcHHHHHHHHH-cCCCCCCCCCC
Confidence            5677889999999999988   99999999999999  8889999999999999999 5999999994 68999999999


Q ss_pred             CCcHHHHHH--HcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcC--CHHHHHhhhh
Q 041026           83 GDTPLHCAA--RAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFML--GRVNVRRTNT  148 (149)
Q Consensus        83 g~tplh~a~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~--~~~~~~~L~~  148 (149)
                      |.||||+|+  ..++.+++++|++.|     ++++      .++..|.||||+|+..+  +.+++++|.+
T Consensus       117 g~tpLh~a~~~~~~~~~iv~~Ll~~g-----ad~~------~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~  175 (471)
T PHA03095        117 GRTPLHVYLSGFNINPKVIRLLLRKG-----ADVN------ALDLYGMTPLAVLLKSRNANVELLRLLID  175 (471)
T ss_pred             CCCHHHHHhhCCcCCHHHHHHHHHcC-----CCCC------ccCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999  456789999999998     7776      67888899999888765  5778887754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=6.2e-23  Score=153.66  Aligned_cols=128  Identities=16%  Similarity=0.079  Sum_probs=106.9

Q ss_pred             ccccCCCCCCHHHHHHHhCC--HHHHHHHHHhCCCCccccCCCCCCcHHHHHH---------------------------
Q 041026            7 VHLNDTTNKSPLSLAIEMEN--TDVLEYILRSLPSGISWSSGKSPFSLLDVAA---------------------------   57 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~---------------------------   57 (149)
                      ++.+|..|.||||+|++.|+  .+++++|++.|++  ++.++..|.||||+|+                           
T Consensus       205 VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD--VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~  282 (764)
T PHA02716        205 VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD--MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIP  282 (764)
T ss_pred             CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccch
Confidence            56778899999999999885  4889999999998  8888899999998653                           


Q ss_pred             ----------HhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHH--cCCHHHHHHHHHhhhcCCCCCCCCccccccccC
Q 041026           58 ----------KYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAAR--AGKLNTATVLVDFAKHIPSTSQPPVDLLRMENA  125 (149)
Q Consensus        58 ----------~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  125 (149)
                                ..|+.+++++|++ .|++++.+|..|+||||+|+.  .++.+++++|++.|     ++++      .+|.
T Consensus       283 ~~L~~~i~AA~~g~leiVklLLe-~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G-----ADIN------~kD~  350 (764)
T PHA02716        283 MILHSYITLARNIDISVVYSFLQ-PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG-----NDLN------EPDN  350 (764)
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHh-CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC-----CCCc------cCCC
Confidence                      3466788888884 688899999999999998764  45789999999988     7777      7899


Q ss_pred             CCCCHHHHHHH--------------cCCHHHHHhhhh
Q 041026          126 MGNTVLREALF--------------MLGRVNVRRTNT  148 (149)
Q Consensus       126 ~g~t~l~~A~~--------------~~~~~~~~~L~~  148 (149)
                      .|+||||+|+.              .++.+++++|.+
T Consensus       351 ~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~  387 (764)
T PHA02716        351 IGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS  387 (764)
T ss_pred             CCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH
Confidence            99999999875              368899998864

>PHA02946 ankyin-like protein; Provisional

Probab=99.90  E-value=8e-23  Score=147.36  Aligned_cols=137  Identities=15%  Similarity=0.047  Sum_probs=102.2

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhC--cHHHHHHHHHhCCcceec-ccCCC
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYG--HGEISAKIAQYYPFFINK-TNNQG   83 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~-~~~~g   83 (149)
                      ++.+|.+|.||||+|++.|+.+++++|+++|++  ++.+|..|.||||+|+..+  ..+++++|++ .|++++. .|..|
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd--in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~-~Gadin~~~d~~g  141 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINNNRIVAMLLTHGAD--PNACDKQHKTPLYYLSGTDDEVIERINLLVQ-YGAKINNSVDEEG  141 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC--CCCCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCcccccCCCC
Confidence            577899999999999999999999999999999  8889999999999988765  3778888884 5777774 56677


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCC------------------------CccccccccCCCCCHHHHHHHcC-
Q 041026           84 DTPLHCAARAGKLNTATVLVDFAKHIPSTSQP------------------------PVDLLRMENAMGNTVLREALFML-  138 (149)
Q Consensus        84 ~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~------------------------~~~~~~~~~~~g~t~l~~A~~~~-  138 (149)
                      .|||| |+..|+.+++++|++.|...+..+..                        ....++.+|..|.||||+|+..+ 
T Consensus       142 ~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        142 CGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             CcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence            77776 44556666667666665321100000                        01233367889999999999875 


Q ss_pred             -CHHHHHhhh
Q 041026          139 -GRVNVRRTN  147 (149)
Q Consensus       139 -~~~~~~~L~  147 (149)
                       +.+++++|.
T Consensus       221 ~~~~iv~lLl  230 (446)
T PHA02946        221 KNVDIINLLL  230 (446)
T ss_pred             CcHHHHHHHH
Confidence             778888765

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=8.6e-23  Score=149.09  Aligned_cols=29  Identities=10%  Similarity=-0.070  Sum_probs=21.7

Q ss_pred             ccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026          119 LLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus       119 ~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      +++.+|..|+||||+|+..|+.+++++|.
T Consensus       250 dvN~~d~~G~TPL~~A~~~~~~~~v~~LL  278 (489)
T PHA02798        250 DINQVDELGFNPLYYSVSHNNRKIFEYLL  278 (489)
T ss_pred             CCCCcCcCCccHHHHHHHcCcHHHHHHHH
Confidence            34567777888888888888888887774

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=148.63  Aligned_cols=128  Identities=12%  Similarity=0.041  Sum_probs=105.2

Q ss_pred             ccccCCCCCCHHHHHHHh-----CCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhC---cHHHHHHHHHhCCcceec
Q 041026            7 VHLNDTTNKSPLSLAIEM-----ENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYG---HGEISAKIAQYYPFFINK   78 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~Ll~~~~~~~~~   78 (149)
                      ++.+|..|.||||.++..     +..+++++|++.|++  ++.++..|.||||+|+..+   +.+++++|++ .|++++.
T Consensus        64 vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad--iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~-~Gadvn~  140 (489)
T PHA02798         64 VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD--INKKNSDGETPLYCLLSNGYINNLEILLFMIE-NGADTTL  140 (489)
T ss_pred             CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC--CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHH-cCCCccc
Confidence            567788999999988753     668899999999998  8888999999999998875   6789999994 6899999


Q ss_pred             ccCCCCcHHHHHHHcCC---HHHHHHHHHhhhcCCCCCCCCccccccc-cCCCCCHHHHHHHc----CCHHHHHhhhh
Q 041026           79 TNNQGDTPLHCAARAGK---LNTATVLVDFAKHIPSTSQPPVDLLRME-NAMGNTVLREALFM----LGRVNVRRTNT  148 (149)
Q Consensus        79 ~~~~g~tplh~a~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~~~g~t~l~~A~~~----~~~~~~~~L~~  148 (149)
                      +|..|.||||+|++.++   .+++++|++.|     ++++      .. +..|.||+|.++..    ++.+++++|.+
T Consensus       141 ~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g-----adin------~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~  207 (489)
T PHA02798        141 LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG-----VDIN------THNNKEKYDTLHCYFKYNIDRIDADILKLFVD  207 (489)
T ss_pred             cCCCCCcHHHHHHHcCCcchHHHHHHHHHhC-----CCcc------cccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence            99999999999999887   89999999988     6665      44 45678888887764    36788877753

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.4e-22  Score=146.97  Aligned_cols=57  Identities=19%  Similarity=0.162  Sum_probs=31.1

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           80 NNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        80 ~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |..|.||||+|+..|+.+++++|++.|     ++++      .++..|.||||+|+..++.++++.|.
T Consensus       253 d~~G~TpL~~Aa~~~~~~~v~~LL~~G-----adin------~~d~~G~TpL~~A~~~~~~~iv~~LL  309 (494)
T PHA02989        253 DKKGFNPLLISAKVDNYEAFNYLLKLG-----DDIY------NVSKDGDTVLTYAIKHGNIDMLNRIL  309 (494)
T ss_pred             CCCCCCHHHHHHHhcCHHHHHHHHHcC-----CCcc------ccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            334555555555555555555555555     4444      45555555555555555555555443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.9e-22  Score=131.50  Aligned_cols=118  Identities=12%  Similarity=0.033  Sum_probs=103.3

Q ss_pred             ccccC-CCCCCHHHHHHHh---CCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHh--CcHHHHHHHHHhCCcceeccc
Q 041026            7 VHLND-TTNKSPLSLAIEM---ENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKY--GHGEISAKIAQYYPFFINKTN   80 (149)
Q Consensus         7 ~~~~d-~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~~   80 (149)
                      ++.++ ..|.||||+|+..   ++.+++++|++.+++  ++.++..|.||||+|+..  ++.+++++|+ ..|++++.+|
T Consensus        79 vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad--in~~d~~G~TpLh~a~~~~~~~~~iv~~Li-~~gadin~~d  155 (209)
T PHA02859         79 VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS--ITEEDEDGKNLLHMYMCNFNVRINVIKLLI-DSGVSFLNKD  155 (209)
T ss_pred             CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHhccCCHHHHHHHH-HcCCCccccc
Confidence            34555 5899999998764   479999999999999  999999999999998764  6899999999 5689999999


Q ss_pred             CCCCcHHHH-HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcC
Q 041026           81 NQGDTPLHC-AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFML  138 (149)
Q Consensus        81 ~~g~tplh~-a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  138 (149)
                      ..|.||||. ++..++.+++++|++.|     ++++      .+|..|.||+++|...+
T Consensus       156 ~~g~t~Lh~~a~~~~~~~iv~~Ll~~G-----adi~------~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        156 FDNNNILYSYILFHSDKKIFDFLTSLG-----IDIN------ETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCcHHHHHHHhcCCHHHHHHHHHcC-----CCCC------CCCCCCCCHHHHHhhhh
Confidence            999999996 56688999999999999     7777      89999999999998764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.9e-22  Score=145.81  Aligned_cols=139  Identities=14%  Similarity=0.117  Sum_probs=113.2

Q ss_pred             ccccCCCCCCHHHHHHHh---CCHHHHHHHHHhCCCCcc-ccCCCCCCcHHHHHHHh--CcHHHHHHHHHhCCcceec-c
Q 041026            7 VHLNDTTNKSPLSLAIEM---ENTDVLEYILRSLPSGIS-WSSGKSPFSLLDVAAKY--GHGEISAKIAQYYPFFINK-T   79 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~-~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~~~~~~~~-~   79 (149)
                      ++.+|.+|.||||.|+..   ++.+++++|++.|++  + +..+..|+||||+|+..  ++.+++++|++ .|++++. .
T Consensus       101 in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad--in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~-~Gadi~~~~  177 (494)
T PHA02989        101 INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN--VNDVKNSRGYNLLHMYLESFSVKKDVIKILLS-FGVNLFEKT  177 (494)
T ss_pred             CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC--cccccCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCccccc
Confidence            567889999999988765   678999999999999  7 78889999999998764  57899999995 6899888 6


Q ss_pred             cCCCCcHHHHHHHcC----CHHHHHHHHHhhhcCCCCCCCC---------------------------ccccccccCCCC
Q 041026           80 NNQGDTPLHCAARAG----KLNTATVLVDFAKHIPSTSQPP---------------------------VDLLRMENAMGN  128 (149)
Q Consensus        80 ~~~g~tplh~a~~~g----~~~~v~~Ll~~~~~~~~~~~~~---------------------------~~~~~~~~~~g~  128 (149)
                      +..|.||||+|+..+    +.+++++|++.|...+..+...                           ..+++.+|..|.
T Consensus       178 ~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~  257 (494)
T PHA02989        178 SLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGF  257 (494)
T ss_pred             cccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCC
Confidence            788999999998754    8899999999984422111000                           123467888999


Q ss_pred             CHHHHHHHcCCHHHHHhhhh
Q 041026          129 TVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       129 t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||||+|+..++.+++++|..
T Consensus       258 TpL~~Aa~~~~~~~v~~LL~  277 (494)
T PHA02989        258 NPLLISAKVDNYEAFNYLLK  277 (494)
T ss_pred             CHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999864

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=3.3e-22  Score=141.58  Aligned_cols=123  Identities=17%  Similarity=-0.009  Sum_probs=98.4

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCCCccccC-----CCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHH
Q 041026           13 TNKSPLSLAIEMENTDVLEYILRSLPSGISWSS-----GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      ++.||+|.|+..++.+++++|+++|+. +.+..     +..+.+++|.|...++.+++++|+ .+|++++.+|..|.|||
T Consensus       148 ~~~t~lh~A~~~~~~eIVk~Lls~Ga~-~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LI-s~GADIN~kD~~G~TpL  225 (437)
T PHA02795        148 ECLNAYFRGICKKESSVVEFILNCGIP-DENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCI-PYIEDINQLDAGGRTLL  225 (437)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCc-ccccccchhhhhhccchhHHHHhcCHHHHHHHHH-hCcCCcCcCCCCCCCHH
Confidence            446677777777777777777777653 11111     123567777777778888888888 46899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcC--------CHHHHHhhhh
Q 041026           88 HCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFML--------GRVNVRRTNT  148 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~--------~~~~~~~L~~  148 (149)
                      |+|+..|+.+++++|+++|     ++++      .++..|.||||+|+..|        +.+++++|.+
T Consensus       226 h~Aa~~g~~eiVelLL~~G-----AdIN------~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~  283 (437)
T PHA02795        226 YRAIYAGYIDLVSWLLENG-----ANVN------AVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR  283 (437)
T ss_pred             HHHHHcCCHHHHHHHHHCC-----CCCC------CcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence            9999999999999999999     8887      89999999999999988        4689998864

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=3.6e-23  Score=140.31  Aligned_cols=128  Identities=19%  Similarity=0.197  Sum_probs=96.4

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHh-----CcHHHHHHHHHhCCcceeccc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKY-----GHGEISAKIAQYYPFFINKTN   80 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~Ll~~~~~~~~~~~   80 (149)
                      .+|.-|.+|+|+|||++.++++++|+.|++.+-. +++.+++.|+||+++++..     .+.++|..|+..  .++|.+-
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC-~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m--gnVNaKA  336 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVC-DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM--GDVNAKA  336 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcc-cccccccccccHHHHHHHHhhcchhhHHHHHHHHhc--cCcchhh
Confidence            4788899999999999999999999999998865 4777788888887776554     245566666632  2455553


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           81 -NQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        81 -~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                       ..|+|+|.+|+.+|+.++++.|+..|     +|++      ..|..|.|+|+.|+++||.|++++|.
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacg-----AdVN------iQDdDGSTALMCA~EHGhkEivklLL  393 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACG-----ADVN------IQDDDGSTALMCAAEHGHKEIVKLLL  393 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHcc-----CCCc------cccCCccHHHhhhhhhChHHHHHHHh
Confidence             45777777777777777777777777     6666      67777777777777777777777764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=3.6e-22  Score=149.64  Aligned_cols=128  Identities=12%  Similarity=0.121  Sum_probs=108.8

Q ss_pred             cccc-CCCCCCHHHHHHH--hCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCc--HHHHHHHHHhCCcceecccC
Q 041026            7 VHLN-DTTNKSPLSLAIE--MENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGH--GEISAKIAQYYPFFINKTNN   81 (149)
Q Consensus         7 ~~~~-d~~g~t~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~   81 (149)
                      ++.+ |..|.||||+|+.  .++.+++++|++.|++  ++.++..|.||||+|+..|+  .+++++|++ .|++++.+|.
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD--VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe-~GADVN~kD~  245 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN--VNLQNNHLITPLHTYLITGNVCASVIKKIIE-LGGDMDMKCV  245 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCCCCCC
Confidence            4556 7899999999865  4678999999999999  99999999999999999995  489999995 6999999999


Q ss_pred             CCCcHHHHHH-------------------------------------HcCCHHHHHHHHHhhhcCCCCCCCCcccccccc
Q 041026           82 QGDTPLHCAA-------------------------------------RAGKLNTATVLVDFAKHIPSTSQPPVDLLRMEN  124 (149)
Q Consensus        82 ~g~tplh~a~-------------------------------------~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  124 (149)
                      .|+||||+|+                                     ..|+.+++++|++.|     ++++      .+|
T Consensus       246 ~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G-----AdIN------~kD  314 (764)
T PHA02716        246 NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG-----VKLH------YKD  314 (764)
T ss_pred             CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC-----Ccee------ccC
Confidence            9999999763                                     346677777777777     6666      789


Q ss_pred             CCCCCHHHHHHH--cCCHHHHHhhhh
Q 041026          125 AMGNTVLREALF--MLGRVNVRRTNT  148 (149)
Q Consensus       125 ~~g~t~l~~A~~--~~~~~~~~~L~~  148 (149)
                      ..|+||||+|+.  .++.+++++|.+
T Consensus       315 ~~G~TPLH~Aaa~~~~~~eIVklLLe  340 (764)
T PHA02716        315 SAGRTCLHQYILRHNISTDIIKLLHE  340 (764)
T ss_pred             CCCCCHHHHHHHHhCCCchHHHHHHH
Confidence            999999999875  468899999864

>PHA02946 ankyin-like protein; Provisional

Probab=99.88  E-value=1e-21  Score=141.69  Aligned_cols=122  Identities=16%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCc--HHHHHHHHHhCCcceecccCCCCcHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGH--GEISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      |.+|.|||| |+..++.+++++|++.+++  ++.++..|+||||+|+..++  .+++++|++ .|++++.+|..|.||||
T Consensus       138 d~~g~tpL~-aa~~~~~~vv~~Ll~~gad--~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~-~Gadin~~d~~G~TpLH  213 (446)
T PHA02946        138 DEEGCGPLL-ACTDPSERVFKKIMSIGFE--ARIVDKFGKNHIHRHLMSDNPKASTISWMMK-LGISPSKPDHDGNTPLH  213 (446)
T ss_pred             CCCCCcHHH-HHHCCChHHHHHHHhcccc--ccccCCCCCCHHHHHHHhcCCCHHHHHHHHH-cCCCCcccCCCCCCHHH
Confidence            344444443 3333444444555554444  55556677777777666543  567778874 57888888888888888


Q ss_pred             HHHHcC--CHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCC-HHHHHhhhh
Q 041026           89 CAARAG--KLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG-RVNVRRTNT  148 (149)
Q Consensus        89 ~a~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~-~~~~~~L~~  148 (149)
                      +|+..+  +.+++++|+. +     ++++      .+|..|.||||+|+..++ .+++++|..
T Consensus       214 ~Aa~~~~~~~~iv~lLl~-g-----adin------~~d~~G~TpLh~A~~~~~~~~~~~~Ll~  264 (446)
T PHA02946        214 IVCSKTVKNVDIINLLLP-S-----TDVN------KQNKFGDSPLTLLIKTLSPAHLINKLLS  264 (446)
T ss_pred             HHHHcCCCcHHHHHHHHc-C-----CCCC------CCCCCCCCHHHHHHHhCChHHHHHHHHh
Confidence            888875  6778888874 5     5555      899999999999999988 478887754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-22  Score=141.49  Aligned_cols=125  Identities=21%  Similarity=0.136  Sum_probs=117.5

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHH
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHC   89 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~   89 (149)
                      ...+|-+||-.|+..||+++++.|+++++.  .|.......|||-.||.-|+.+++++|+ .++++++..|..|.|.|++
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~--VN~tT~TNStPLraACfDG~leivKyLv-E~gad~~IanrhGhTcLmI  156 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGAS--VNDTTRTNSTPLRAACFDGHLEIVKYLV-EHGADPEIANRHGHTCLMI  156 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCc--cccccccCCccHHHHHhcchhHHHHHHH-HcCCCCcccccCCCeeEEe
Confidence            346788998888889999999999999988  8888888889999999999999999999 5699999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           90 AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |++.|+.+++++|++.|     +|++      .++..|.|+||.+++.|+.+++++|.+
T Consensus       157 a~ykGh~~I~qyLle~g-----ADvn------~ks~kGNTALH~caEsG~vdivq~Ll~  204 (615)
T KOG0508|consen  157 ACYKGHVDIAQYLLEQG-----ADVN------AKSYKGNTALHDCAESGSVDIVQLLLK  204 (615)
T ss_pred             eeccCchHHHHHHHHhC-----CCcc------hhcccCchHHHhhhhcccHHHHHHHHh
Confidence            99999999999999999     8888      899999999999999999999999875

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=2.7e-22  Score=147.38  Aligned_cols=132  Identities=23%  Similarity=0.256  Sum_probs=117.5

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC-------------CccccCCCCCCcHHHHHHHhCcHHHHHHHHHhC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS-------------GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYY   72 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~-------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~   72 (149)
                      .++..+..+.+|||.|+..|+.+.++.+++.+..             ..++..|..|.||||+|+..|+.+.++.|+ ..
T Consensus       217 ~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll-~~  295 (929)
T KOG0510|consen  217 HINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLL-GF  295 (929)
T ss_pred             ccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHH-Hc
Confidence            4567788999999999999999999999998875             234457889999999999999999999999 57


Q ss_pred             CcceecccCCCCcHHHHHHHcCCHHHHHHHHH-hhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           73 PFFINKTNNQGDTPLHCAARAGKLNTATVLVD-FAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        73 ~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |++++.++.++.||||.|+.+|++++++-|++ .+       .   -+++..|..|.||||+|++.||..++++|.+
T Consensus       296 Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~-------~---rllne~D~~g~tpLHlaa~~gH~~v~qlLl~  362 (929)
T KOG0510|consen  296 GASINSKNKDEESPLHFAAIYGRINTVERLLQESD-------T---RLLNESDLHGMTPLHLAAKSGHDRVVQLLLN  362 (929)
T ss_pred             CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcC-------c---cccccccccCCCchhhhhhcCHHHHHHHHHh
Confidence            99999999999999999999999999999998 33       1   1455889999999999999999999999875

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.88  E-value=5.1e-21  Score=115.46  Aligned_cols=125  Identities=26%  Similarity=0.282  Sum_probs=113.6

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHH
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      .+|.+|.||||+|+..++.++++++++.+..  .+..+..|.+|+|.|+..++.+++++|++ .+..++..+..+.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~--~~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGAD--VNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHH
Confidence            4568899999999999999999999999988  67888899999999999999999999995 56778888899999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           89 CAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        89 ~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      +|+..++.+++++|++.+     .+.+      ..+..+.||+++|...++.+++++|.
T Consensus        79 ~a~~~~~~~~~~~L~~~~-----~~~~------~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHG-----ADVN------ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcC-----CCCc------ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999988     5555      67889999999999999999999873

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.88  E-value=2.2e-22  Score=133.41  Aligned_cols=118  Identities=26%  Similarity=0.268  Sum_probs=109.8

Q ss_pred             cccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCC
Q 041026            4 LNLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQG   83 (149)
Q Consensus         4 ~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g   83 (149)
                      ...+|.-|..|++||||||+.|+..+++.|++.|+.  .+..+....||||+|+..|+-+++..|++ ..+++|..++.|
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgar--vn~tnmgddtplhlaaahghrdivqkll~-~kadvnavnehg  100 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR--VNSTNMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVNEHG  100 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhcccc--cccccCCCCcchhhhhhcccHHHHHHHHH-HhcccchhhccC
Confidence            346788899999999999999999999999999999  88888888999999999999999999995 589999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHH
Q 041026           84 DTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL  135 (149)
Q Consensus        84 ~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  135 (149)
                      +|||||||..|...+.+-|+..|     +.++      ..|+.|.||+..|-
T Consensus       101 ntplhyacfwgydqiaedli~~g-----a~v~------icnk~g~tpldkak  141 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQIAEDLISCG-----AAVN------ICNKKGMTPLDKAK  141 (448)
T ss_pred             CCchhhhhhhcHHHHHHHHHhcc-----ceee------ecccCCCCchhhhc
Confidence            99999999999999999999999     7777      89999999998774

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.2e-21  Score=124.43  Aligned_cols=102  Identities=14%  Similarity=0.117  Sum_probs=92.5

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHH---HHHHHHhCCCCccccCC-CCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCC
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDV---LEYILRSLPSGISWSSG-KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~---~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      ++.+|..|.||||+|+..|+.+.   +++|++.+++  ++.++ ..|.||||+|+..++.+++++|++..+++++.++..
T Consensus        50 ~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad--in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~  127 (166)
T PHA02743         50 LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD--INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQ  127 (166)
T ss_pred             hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC--CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCC
Confidence            46678999999999999988654   8999999998  88887 589999999999999999999996568999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCC
Q 041026           83 GDTPLHCAARAGKLNTATVLVDFAKHIPSTSQP  115 (149)
Q Consensus        83 g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~  115 (149)
                      |.||||+|+..++.+++++|+++|     ++++
T Consensus       128 g~tpL~~A~~~~~~~iv~~Ll~~g-----a~~~  155 (166)
T PHA02743        128 HETAYHIAYKMRDRRMMEILRANG-----AVCD  155 (166)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC-----CCCC
Confidence            999999999999999999999999     6666

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.2e-21  Score=146.58  Aligned_cols=139  Identities=17%  Similarity=0.119  Sum_probs=98.2

Q ss_pred             ccccCCCCCCHHHHHHHhC-CHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhC-cHHHHHHHHHhCCcceecccCCCC
Q 041026            7 VHLNDTTNKSPLSLAIEME-NTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYG-HGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      ++.+|.+|.||||+|+..| +.+.++.|+..+++  ++..+..|.||||+|+..+ +.+++..|+ ..|++++.+|..|.
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad--in~~d~~g~TpLh~A~~~~~~~~iv~lLl-~~gadin~~d~~G~  376 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD--VNAADRLYITPLHQASTLDRNKDIVITLL-ELGANVNARDYCDK  376 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC--CCCcccCCCcHHHHHHHhCCcHHHHHHHH-HcCCCCccCCCCCC
Confidence            4567777888888888777 47777778877777  7777777777877777654 466666666 45777777777777


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCC-----------------------CccccccccCCCCCHHHHHHHcC-CH
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQP-----------------------PVDLLRMENAMGNTVLREALFML-GR  140 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~-----------------------~~~~~~~~~~~g~t~l~~A~~~~-~~  140 (149)
                      ||||+|+..|+.+++++|++.|......+..                       ...+++.+|..|+||||+|+..+ +.
T Consensus       377 TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~  456 (682)
T PHA02876        377 TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKL  456 (682)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcH
Confidence            7777777777777777777776332110000                       02344578888999999998876 67


Q ss_pred             HHHHhhhh
Q 041026          141 VNVRRTNT  148 (149)
Q Consensus       141 ~~~~~L~~  148 (149)
                      +++++|.+
T Consensus       457 ~iv~lLl~  464 (682)
T PHA02876        457 DVIEMLLD  464 (682)
T ss_pred             HHHHHHHH
Confidence            88888764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.88  E-value=3.3e-21  Score=145.69  Aligned_cols=128  Identities=16%  Similarity=0.103  Sum_probs=115.7

Q ss_pred             ccccCCCCCCHHHHHHHhCCH-HHHHHHHHhCCCCccccCCCCCCcHHHHHHHhC-cHHHHHHHHHhCCcceecccCCCC
Q 041026            7 VHLNDTTNKSPLSLAIEMENT-DVLEYILRSLPSGISWSSGKSPFSLLDVAAKYG-HGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      ++..|..|.||||+|+..++. .+++.|++.+++  ++..+..|.||||+|+..| ..++++.|+ ..|++++..|..|.
T Consensus       266 vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad--in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll-~~gadin~~d~~g~  342 (682)
T PHA02876        266 VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD--VNAKNIKGETPLYLMAKNGYDTENIRTLI-MLGADVNAADRLYI  342 (682)
T ss_pred             CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHhCCCHHHHHHHH-HcCCCCCCcccCCC
Confidence            566788999999999999986 588999999998  8889999999999999999 589999999 56899999999999


Q ss_pred             cHHHHHHHc-CCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           85 TPLHCAARA-GKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        85 tplh~a~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||||+|+.. ++.+++++|++.|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus       343 TpLh~A~~~~~~~~iv~lLl~~g-----adin------~~d~~G~TpLh~Aa~~~~~~iv~~Ll~  396 (682)
T PHA02876        343 TPLHQASTLDRNKDIVITLLELG-----ANVN------ARDYCDKTPIHYAAVRNNVVIINTLLD  396 (682)
T ss_pred             cHHHHHHHhCCcHHHHHHHHHcC-----CCCc------cCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999985 4688999999998     7777      789999999999999999999998864

>PHA02917 ankyrin-like protein; Provisional

Probab=99.86  E-value=6.6e-21  Score=142.57  Aligned_cols=116  Identities=10%  Similarity=-0.039  Sum_probs=94.6

Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHH--HhCcHHHHHHHHHhCCcceecccC---CC----------
Q 041026           19 SLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAA--KYGHGEISAKIAQYYPFFINKTNN---QG----------   83 (149)
Q Consensus        19 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~---~g----------   83 (149)
                      ++|+..++.+++++|++.|++  ++.++..|.||||.++  ..++.+++++|++ .|++++..|.   .|          
T Consensus       108 ~~a~~~~~~e~vk~Ll~~Gad--in~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~d~~~~~g~~~~~~~~~~  184 (661)
T PHA02917        108 YMKSKNVDVDLIKVLVEHGFD--LSVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYEDEDDEYGYAYDDYQPRN  184 (661)
T ss_pred             HHHhhcCCHHHHHHHHHcCCC--CCccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCccccccccccccccccccccc
Confidence            334444566778888888888  8888999999999654  4689999999995 6898876543   33          


Q ss_pred             -CcHHHHHHH-----------cCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCH--HHHHhhhh
Q 041026           84 -DTPLHCAAR-----------AGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGR--VNVRRTNT  148 (149)
Q Consensus        84 -~tplh~a~~-----------~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~--~~~~~L~~  148 (149)
                       .||||+|+.           .++.+++++|++.|     ++++      .++..|.||||+|+..|+.  +++++|.+
T Consensus       185 ~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-----advn------~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        185 CGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-----IKPS------SIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             cccHHHHHHhhcccccccccccCcHHHHHHHHHCC-----CCcc------cCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence             599999986           45889999999999     8887      8999999999999999985  79998864

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=5e-21  Score=118.15  Aligned_cols=119  Identities=20%  Similarity=0.163  Sum_probs=66.8

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .+|.+|.+|.||||-|+..|+.++++.|+..++.  .+.+...|+||||-||..++.+++.+|+ .+|++++.......|
T Consensus        89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn--~~a~T~~GWTPLhSAckWnN~~va~~LL-qhgaDVnA~t~g~lt  165 (228)
T KOG0512|consen   89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN--KEAKTNEGWTPLHSACKWNNFEVAGRLL-QHGADVNAQTKGLLT  165 (228)
T ss_pred             cccccccccccHHHHHHhcCchHHHHHHHHccCC--cccccccCccchhhhhcccchhHHHHHH-hccCcccccccccch
Confidence            4556666666666666666666666666666655  5555566666666666666666666666 345666666665666


Q ss_pred             HHHHHHHcCCH-HHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHc
Q 041026           86 PLHCAARAGKL-NTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFM  137 (149)
Q Consensus        86 plh~a~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  137 (149)
                      |||.|+...+. ..+.+|+....    ..      ...++..+.||+.+|-+.
T Consensus       166 pLhlaa~~rn~r~t~~~Ll~dry----i~------pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  166 PLHLAAGNRNSRDTLELLLHDRY----IH------PGLKNNLEETAFDIARRT  208 (228)
T ss_pred             hhHHhhcccchHHHHHHHhhccc----cC------hhhhcCccchHHHHHHHh
Confidence            66666654443 33444443331    11      114555666666666554

>PHA02917 ankyrin-like protein; Provisional

Probab=99.85  E-value=2.1e-20  Score=139.89  Aligned_cols=134  Identities=10%  Similarity=0.043  Sum_probs=104.6

Q ss_pred             ccccCCCCCCHHHHHHHh---CCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCc----------------------
Q 041026            7 VHLNDTTNKSPLSLAIEM---ENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGH----------------------   61 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~----------------------   61 (149)
                      ++.+|.+|.||||+|+..   |+.+++++|++.|++  ++.++..|.||||+|+..|+                      
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~--v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~  102 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN--PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND  102 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC--ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC
Confidence            456789999999998665   889999999999999  88889999999998877543                      


Q ss_pred             -------------HHHHHHHHHhCCcceecccCCCCcHHHHHH--HcCCHHHHHHHHHhhhcCCCCCCCCcc--------
Q 041026           62 -------------GEISAKIAQYYPFFINKTNNQGDTPLHCAA--RAGKLNTATVLVDFAKHIPSTSQPPVD--------  118 (149)
Q Consensus        62 -------------~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~--------  118 (149)
                                   .+++++|++ .|++++.+|.+|.||||.++  ..|+.+++++|+++|     ++++...        
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~-~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~G-----a~vn~~d~~~~~g~~  176 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVE-HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENG-----CSVLYEDEDDEYGYA  176 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHH-cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcC-----CCccccccccccccc
Confidence                         456666773 58999999999999999654  468999999999999     7665100        


Q ss_pred             ccccccCCCCCHHHHHHH-----------cCCHHHHHhhhh
Q 041026          119 LLRMENAMGNTVLREALF-----------MLGRVNVRRTNT  148 (149)
Q Consensus       119 ~~~~~~~~g~t~l~~A~~-----------~~~~~~~~~L~~  148 (149)
                      ........+.||||+|+.           .++.+++++|.+
T Consensus       177 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~  217 (661)
T PHA02917        177 YDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN  217 (661)
T ss_pred             cccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH
Confidence            000112234699999986           468999999874

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=8.8e-21  Score=117.06  Aligned_cols=108  Identities=20%  Similarity=0.141  Sum_probs=100.4

Q ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCC
Q 041026           16 SPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGK   95 (149)
Q Consensus        16 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~   95 (149)
                      .-+.+|+..+....|+.|++..+. .++.+|..|+||||.|+.+|+.++++.|+ .+|++.+.+...|+||||.||...+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an-~vNtrD~D~YTpLHRAaYn~h~div~~ll-~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKAN-HVNTRDEDEYTPLHRAAYNGHLDIVHELL-LSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccc-cccccccccccHHHHHHhcCchHHHHHHH-HccCCcccccccCccchhhhhcccc
Confidence            346889999999999999998887 68899999999999999999999999999 5799999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHH
Q 041026           96 LNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALF  136 (149)
Q Consensus        96 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  136 (149)
                      .+++.+|+++|     +|++      .......||||+|+.
T Consensus       143 ~~va~~LLqhg-----aDVn------A~t~g~ltpLhlaa~  172 (228)
T KOG0512|consen  143 FEVAGRLLQHG-----ADVN------AQTKGLLTPLHLAAG  172 (228)
T ss_pred             hhHHHHHHhcc-----Cccc------ccccccchhhHHhhc
Confidence            99999999999     8888      788888999999985

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=1.2e-20  Score=128.13  Aligned_cols=128  Identities=20%  Similarity=0.196  Sum_probs=112.3

Q ss_pred             cccccCCCCCCHHHHHHHh-----CCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceeccc
Q 041026            6 LVHLNDTTNKSPLSLAIEM-----ENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTN   80 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~   80 (149)
                      -++.++.-|.||+++++..     .+..+|..|++.|.-  .-.-...|+|+|++|+..|+.++++.|+ .+++++|.+|
T Consensus       294 ~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV--NaKAsQ~gQTALMLAVSHGr~d~vk~LL-acgAdVNiQD  370 (452)
T KOG0514|consen  294 DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV--NAKASQHGQTALMLAVSHGRVDMVKALL-ACGADVNIQD  370 (452)
T ss_pred             cccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc--chhhhhhcchhhhhhhhcCcHHHHHHHH-HccCCCcccc
Confidence            3678899999999998754     567789999988755  3334568999999999999999999999 6899999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhh
Q 041026           81 NQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRT  146 (149)
Q Consensus        81 ~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  146 (149)
                      .+|.|+|.+|+.+|+.+++++|+...    +.+..      .+|..|.|+|++|...||.+|.-+|
T Consensus       371 dDGSTALMCA~EHGhkEivklLLA~p----~cd~s------LtD~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  371 DDGSTALMCAAEHGHKEIVKLLLAVP----SCDIS------LTDVDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             CCccHHHhhhhhhChHHHHHHHhccC----cccce------eecCCCchhhhhHHhcCchHHHHHH
Confidence            99999999999999999999999987    24455      8999999999999999999998765

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=2e-20  Score=107.10  Aligned_cols=82  Identities=27%  Similarity=0.353  Sum_probs=75.9

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHH
Q 041026           18 LSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLN   97 (149)
Q Consensus        18 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~   97 (149)
                      ||+|++.|+.+++++|++.+.+  ++.    |+||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~--~~~----~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD--INL----GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST--TTS----SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC--CCC----CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHH
Confidence            7999999999999999998776  544    8899999999999999999995 68999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 041026           98 TATVLVDFA  106 (149)
Q Consensus        98 ~v~~Ll~~~  106 (149)
                      ++++|+++|
T Consensus        74 ~~~~Ll~~g   82 (89)
T PF12796_consen   74 IVKLLLEHG   82 (89)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999999

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=4.5e-20  Score=136.45  Aligned_cols=125  Identities=15%  Similarity=0.082  Sum_probs=106.3

Q ss_pred             CCCCCHHHHHHHhCC----HHHHHHHHHhCCCCccccCCCCCCcHHHH---HHHhC---------cHHHHHHHHHhCCcc
Q 041026           12 TTNKSPLSLAIEMEN----TDVLEYILRSLPSGISWSSGKSPFSLLDV---AAKYG---------HGEISAKIAQYYPFF   75 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~l~~---a~~~~---------~~~~~~~Ll~~~~~~   75 (149)
                      ..|.||||+|+..++    .+++++|+++|+..+.+.++..|.||||.   +...+         ..+++++|+ .+|++
T Consensus       376 ~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LI-s~GAD  454 (672)
T PHA02730        376 TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILS-KYMDD  454 (672)
T ss_pred             CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHH-hcccc
Confidence            689999999998875    89999999999743378888999999984   33232         235689999 57999


Q ss_pred             eecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccC-CCCCHHHHHHHc--CCHHHHHhhhh
Q 041026           76 INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENA-MGNTVLREALFM--LGRVNVRRTNT  148 (149)
Q Consensus        76 ~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~--~~~~~~~~L~~  148 (149)
                      ++.+|..|.||||+|+..++.+++++|+++|     ++++      .++. .|.||+|.|+..  ++.+++++|.+
T Consensus       455 INakD~~G~TPLh~Aa~~~~~eive~LI~~G-----AdIN------~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs  519 (672)
T PHA02730        455 IDMIDNENKTLLYYAVDVNNIQFARRLLEYG-----ASVN------TTSRSIINTAIQKSSYRRENKTKLVDLLLS  519 (672)
T ss_pred             hhccCCCCCCHHHHHHHhCCHHHHHHHHHCC-----CCCC------CCCCcCCcCHHHHHHHhhcCcHHHHHHHHH
Confidence            9999999999999999999999999999999     8777      6775 699999999974  78999998864

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.85  E-value=1e-20  Score=145.12  Aligned_cols=123  Identities=23%  Similarity=0.234  Sum_probs=104.8

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAA   91 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~   91 (149)
                      ..+.+++|.+...+....++.+++.++.  .+.++..++||||.|+.+|+..+|++|++ .|++++.+++.|+||||.|+
T Consensus       505 ~~~l~~lhla~~~~~v~~~~~l~~~ga~--v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa  581 (1143)
T KOG4177|consen  505 KKGLTPLHLAADEDTVKVAKILLEHGAN--VDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAA  581 (1143)
T ss_pred             hhccchhhhhhhhhhHHHHHHHhhcCCc--eehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHH
Confidence            4455555555555555555555555555  67778889999999999999999999995 69999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           92 RAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        92 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..|+.+|+.+|+++|     ++++      ..+.+|.|||++|++.|+.++++.|..
T Consensus       582 ~~G~~~i~~LLlk~G-----A~vn------a~d~~g~TpL~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  582 QQGHNDIAELLLKHG-----ASVN------AADLDGFTPLHIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             HcChHHHHHHHHHcC-----CCCC------cccccCcchhHHHHHhcccchhhHHHh
Confidence            999999999999999     8888      899999999999999999999998864

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.84  E-value=5.9e-20  Score=141.11  Aligned_cols=121  Identities=17%  Similarity=0.116  Sum_probs=109.7

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAA   91 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~   91 (149)
                      .++.++|+.||..|+.++++.|++.+++  ++..|..|.||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d--~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLD--PDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcCCCCCCHHHHHH
Confidence            4567899999999999999999999999  89999999999999999999999999995 69999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           92 RAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        92 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..|+.+++++|++.+     +..        ....+.++||.|+..|+.+++++|.+
T Consensus       600 ~~g~~~iv~~L~~~~-----~~~--------~~~~~~~~L~~Aa~~g~~~~v~~Ll~  643 (823)
T PLN03192        600 SAKHHKIFRILYHFA-----SIS--------DPHAAGDLLCTAAKRNDLTAMKELLK  643 (823)
T ss_pred             HhCCHHHHHHHHhcC-----ccc--------CcccCchHHHHHHHhCCHHHHHHHHH
Confidence            999999999999876     322        23457799999999999999999865

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=7.8e-20  Score=116.44  Aligned_cols=100  Identities=10%  Similarity=0.136  Sum_probs=91.7

Q ss_pred             ccccCCCCCCHHHHHHHhCC----HHHHHHHHHhCCCCccccCCC-CCCcHHHHHHHhCcHHHHHHHHHhCCcceecccC
Q 041026            7 VHLNDTTNKSPLSLAIEMEN----TDVLEYILRSLPSGISWSSGK-SPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNN   81 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~   81 (149)
                      ++.+|..|.||||+|+..|+    .+++++|++.+++  ++.++. .|.||||+|+..++.+++++|++..+++++..|.
T Consensus        53 in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad--in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  130 (169)
T PHA02741         53 LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD--INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA  130 (169)
T ss_pred             hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC--CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence            67889999999999999998    5889999999998  888875 8999999999999999999999655889999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhc
Q 041026           82 QGDTPLHCAARAGKLNTATVLVDFAKH  108 (149)
Q Consensus        82 ~g~tplh~a~~~g~~~~v~~Ll~~~~~  108 (149)
                      .|.||||+|+..++.+++++|+..+..
T Consensus       131 ~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        131 DNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998744

>PHA02795 ankyrin-like protein; Provisional

Probab=99.84  E-value=8.8e-20  Score=129.36  Aligned_cols=124  Identities=10%  Similarity=-0.021  Sum_probs=108.0

Q ss_pred             ccCCCCCCHHHHHHH--hCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCccee-cc-----c
Q 041026            9 LNDTTNKSPLSLAIE--MENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFIN-KT-----N   80 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~-----~   80 (149)
                      .++..++|+||+++.  .|+.+++++|+++|++  ++.+  .+.||+|.|+..++.+++++|++ .|++.. ..     +
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD--In~~--~~~t~lh~A~~~~~~eIVk~Lls-~Ga~~~n~~~~~l~~  185 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV--IYKI--ECLNAYFRGICKKESSVVEFILN-CGIPDENDVKLDLYK  185 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCC--CCCC--CCCCHHHHHHHcCcHHHHHHHHh-cCCcccccccchhhh
Confidence            467789999999999  8999999999999999  7654  34789999999999999999995 576432 22     1


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           81 NQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        81 ~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..+.||+|.|...++.+++++|+++|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus       186 ~~~~t~l~~a~~~~~~eIve~LIs~G-----ADIN------~kD~~G~TpLh~Aa~~g~~eiVelLL~  242 (437)
T PHA02795        186 IIQYTRGFLVDEPTVLEIYKLCIPYI-----EDIN------QLDAGGRTLLYRAIYAGYIDLVSWLLE  242 (437)
T ss_pred             hhccchhHHHHhcCHHHHHHHHHhCc-----CCcC------cCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34779999999999999999999999     8887      899999999999999999999999864

>PHA02730 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.1e-19  Score=134.40  Aligned_cols=133  Identities=11%  Similarity=-0.004  Sum_probs=109.6

Q ss_pred             cccCCCCCCHHHHHHHhC---CHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhC--cHHHHHHHHHhC-CcceecccC
Q 041026            8 HLNDTTNKSPLSLAIEME---NTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYG--HGEISAKIAQYY-PFFINKTNN   81 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~-~~~~~~~~~   81 (149)
                      ..+|.+|.||||+|+..+   +.+++++|+++|++  ++.+|..|.||||+|+..+  +.+++++|++.. +++++..+.
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd--in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~  112 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE--RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSN  112 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC--CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccc
Confidence            478899999999999987   59999999999999  9999999999999999976  799999999542 344577787


Q ss_pred             CCCcHHHHHHH--cCCHHHHHHHHHhhhcCCCCCCCCccccccc-cCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           82 QGDTPLHCAAR--AGKLNTATVLVDFAKHIPSTSQPPVDLLRME-NAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        82 ~g~tplh~a~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      -+.+|||.++.  .++.+++++|+..+    +.++++  ..+.+ +..|-+|++++...++.+++++|.+
T Consensus       113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~----~~~~~~--~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~  176 (672)
T PHA02730        113 INDFDLYSYMSSDNIDLRLLKYLIVDK----RIRPSK--NTNYYIHCLGLVDIYVTTPNPRPEVLLWLLK  176 (672)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHhc----CCChhh--hhhhhccccchhhhhHhcCCCchHHHHHHHH
Confidence            89999999988  78899999999744    145441  00111 2378999999999999999999865

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=2.1e-20  Score=117.43  Aligned_cols=98  Identities=12%  Similarity=0.023  Sum_probs=89.1

Q ss_pred             ccccCCCCCCHHHHHHHhCCHH---HHHHHHHhCCCCccccCC-CCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCC
Q 041026            7 VHLNDTTNKSPLSLAIEMENTD---VLEYILRSLPSGISWSSG-KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~---~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      +...|.+|.||||+|+..|+.+   ++++|++.+++  ++.++ ..|.||||+|+..++.+++++|++..+++++.+|..
T Consensus        48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad--in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~  125 (154)
T PHA02736         48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD--INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYA  125 (154)
T ss_pred             HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC--ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCC
Confidence            3456889999999999999874   68899999998  88887 489999999999999999999996558999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhh
Q 041026           83 GDTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        83 g~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                      |.||||+|+..|+.+++++|+..|
T Consensus       126 g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736        126 FKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999988

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-20  Score=137.25  Aligned_cols=130  Identities=22%  Similarity=0.129  Sum_probs=121.3

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      +-++.+|.+|+|.||.||..|+.++++.|++..+.  ++..+..|.+|||+|++.|+.++++.++. .+..+|..+..|.
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~--ldl~d~kg~~plhlaaw~g~~e~vkmll~-q~d~~na~~~e~~  116 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL--LDLCDTKGILPLHLAAWNGNLEIVKMLLL-QTDILNAVNIENE  116 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhh--hhhhhccCcceEEehhhcCcchHHHHHHh-cccCCCcccccCc
Confidence            45678899999999999999999999999999888  88888999999999999999999999994 5678999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||||.|++.|+.+++.+|+.++     ++..      ++|..+.||+.+|++.|+.++++.|.+
T Consensus       117 tplhlaaqhgh~dvv~~Ll~~~-----adp~------i~nns~~t~ldlA~qfgr~~Vvq~ll~  169 (854)
T KOG0507|consen  117 TPLHLAAQHGHLEVVFYLLKKN-----ADPF------IRNNSKETVLDLASRFGRAEVVQMLLQ  169 (854)
T ss_pred             CccchhhhhcchHHHHHHHhcC-----CCcc------ccCcccccHHHHHHHhhhhHHHHHHhh
Confidence            9999999999999999999999     8877      899999999999999999999998864

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=4.4e-19  Score=121.16  Aligned_cols=115  Identities=16%  Similarity=0.085  Sum_probs=97.5

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS-GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHC   89 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~   89 (149)
                      |..|.||||+|+..++.+++++|++.|++  ++.+ +..|.||||+|+..++.+++++|+ ..|++++.+|..|.||||+
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~GAD--VN~~~~~~g~TpLh~Aa~~~~~eivklLL-~~GAdin~kd~~G~TpL~~  143 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRYGAD--VNRYAEEAKITPLYISVLHGCLKCLEILL-SYGADINIQTNDMVTPIEL  143 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC--cCcccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHH
Confidence            56899999999999999999999999999  8875 457999999999999999999999 4699999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           90 AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |++.++.+++..+...+                .+..+.+|.+++   ++.+++++|.
T Consensus       144 A~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~---~n~ei~~~Li  182 (300)
T PHA02884        144 ALMICNNFLAFMICDNE----------------ISNFYKHPKKIL---INFDILKILV  182 (300)
T ss_pred             HHHhCChhHHHHhcCCc----------------ccccccChhhhh---ccHHHHHHHH
Confidence            99999888876665333                455667777765   3567777664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=1.6e-19  Score=137.70  Aligned_cols=131  Identities=21%  Similarity=0.135  Sum_probs=107.6

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCC--------------CCCCcHHHHHHHhCcHHHHHHHHHhCCcce
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSG--------------KSPFSLLDVAAKYGHGEISAKIAQYYPFFI   76 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~   76 (149)
                      +..|.||||+|+..|+.++++.|++.|++  ++..+              ..|.+|||.|+..++.+++++|++ .|+++
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAd--v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadi  201 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGAS--VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADI  201 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCC--CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcch
Confidence            35799999999999999999999999998  55332              358899999999999999999994 68999


Q ss_pred             ecccCCCCcHHHHHHHcC---------CHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           77 NKTNNQGDTPLHCAARAG---------KLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        77 ~~~~~~g~tplh~a~~~g---------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      +.+|..|+||||+|+..+         ...+.+++++.+...  .+.  ....+..|..|.|||++|+..|+.+++++|.
T Consensus       202 n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~--~~~--~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       202 LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL--RDS--KELEVILNHQGLTPLKLAAKEGRIVLFRLKL  277 (743)
T ss_pred             hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc--CCh--HhhhhhcCCCCCCchhhhhhcCCccHHHHHH
Confidence            999999999999999886         235677788777321  111  1122467999999999999999999999886


Q ss_pred             h
Q 041026          148 T  148 (149)
Q Consensus       148 ~  148 (149)
                      +
T Consensus       278 ~  278 (743)
T TIGR00870       278 A  278 (743)
T ss_pred             H
Confidence            4

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.80  E-value=2.8e-19  Score=137.34  Aligned_cols=128  Identities=19%  Similarity=0.216  Sum_probs=94.9

Q ss_pred             cccCCCCCCHHHHHHHhC-CHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHh---------------
Q 041026            8 HLNDTTNKSPLSLAIEME-NTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQY---------------   71 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~---------------   71 (149)
                      +.++..|.|++|.|+..| ..+....+++.+.+  ++.....|.||||.|++.|+.+++..+++.               
T Consensus       434 ~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~--~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~l  511 (1143)
T KOG4177|consen  434 NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGAD--PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPL  511 (1143)
T ss_pred             hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCC--cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchh
Confidence            344455555555555555 44555555555555  555555555555555555555555555442               


Q ss_pred             -----------------CCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHH
Q 041026           72 -----------------YPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREA  134 (149)
Q Consensus        72 -----------------~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  134 (149)
                                       .|++++.++..+.||||.|+.+|+..+|++|+++|     ++++      .+++.|+||||.|
T Consensus       512 hla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g-----Adv~------ak~~~G~TPLH~A  580 (1143)
T KOG4177|consen  512 HLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG-----ADVN------AKDKLGYTPLHQA  580 (1143)
T ss_pred             hhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCC-----cccc------ccCCCCCChhhHH
Confidence                             57888889999999999999999999999999999     8888      8999999999999


Q ss_pred             HHcCCHHHHHhhhh
Q 041026          135 LFMLGRVNVRRTNT  148 (149)
Q Consensus       135 ~~~~~~~~~~~L~~  148 (149)
                      +..|+.+++++|.+
T Consensus       581 a~~G~~~i~~LLlk  594 (1143)
T KOG4177|consen  581 AQQGHNDIAELLLK  594 (1143)
T ss_pred             HHcChHHHHHHHHH
Confidence            99999999999865

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=1.4e-18  Score=128.12  Aligned_cols=126  Identities=17%  Similarity=0.076  Sum_probs=111.0

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCcccc-----------C------------CCCCCcHHHHHHHhCcHHHHH
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWS-----------S------------GKSPFSLLDVAAKYGHGEISA   66 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~-----------~------------~~~~~~~l~~a~~~~~~~~~~   66 (149)
                      ....|.||||.|+.+.+.++|+.|++.|++  ++.           .            -+-|..||..|+..++.++++
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gAD--V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr  257 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGAD--VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR  257 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCc--hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH
Confidence            346899999999999999999999999997  221           1            124778999999999999999


Q ss_pred             HHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhh
Q 041026           67 KIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRT  146 (149)
Q Consensus        67 ~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  146 (149)
                      +|++ +|++++.+|..|+|.||.++..-..+|-++++++|     ++ .   +...+|.+|-|||.+|++.|+.+|.+.+
T Consensus       258 lLl~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~g-----a~-~---l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  258 LLLA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELG-----AN-A---LEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             HHHh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcC-----CC-c---cccccccCCCChHHHHHHhhhHHHHHHH
Confidence            9996 79999999999999999999998889999999999     55 1   3448999999999999999999999876


Q ss_pred             h
Q 041026          147 N  147 (149)
Q Consensus       147 ~  147 (149)
                      .
T Consensus       328 l  328 (782)
T KOG3676|consen  328 L  328 (782)
T ss_pred             H
Confidence            4

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.79  E-value=5.7e-19  Score=112.96  Aligned_cols=125  Identities=18%  Similarity=0.092  Sum_probs=108.1

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHH
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      |..+.-+.+|+.+++...+.+..-.+.+.  .  .|..|..|.|||.||+..|+++++++|+ ..|+++....+...|+|
T Consensus       123 nevs~~p~s~~slsVhql~L~~~~~~~~n--~--VN~~De~GfTpLiWAaa~G~i~vV~fLL-~~GAdp~~lgk~resAL  197 (296)
T KOG0502|consen  123 NEVSLMPWSPLSLSVHQLHLDVVDLLVNN--K--VNACDEFGFTPLIWAAAKGHIPVVQFLL-NSGADPDALGKYRESAL  197 (296)
T ss_pred             CccccccCChhhHHHHHHHHHHHHHHhhc--c--ccCccccCchHhHHHHhcCchHHHHHHH-HcCCChhhhhhhhhhhH
Confidence            44455678888888877766665444433  3  6788999999999999999999999999 46999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           88 HCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .+|+..|..++|++|++++     .+++      ..|.+|.|||-+|++-||..|++.|.+
T Consensus       198 sLAt~ggytdiV~lLL~r~-----vdVN------vyDwNGgTpLlyAvrgnhvkcve~Ll~  247 (296)
T KOG0502|consen  198 SLATRGGYTDIVELLLTRE-----VDVN------VYDWNGGTPLLYAVRGNHVKCVESLLN  247 (296)
T ss_pred             hHHhcCChHHHHHHHHhcC-----CCcc------eeccCCCceeeeeecCChHHHHHHHHh
Confidence            9999999999999999999     7777      899999999999999999999998864

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=2.8e-18  Score=98.22  Aligned_cols=80  Identities=29%  Similarity=0.245  Sum_probs=71.9

Q ss_pred             HHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHH
Q 041026           53 LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLR  132 (149)
Q Consensus        53 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~  132 (149)
                      ||+|+..++.+++++|++ .+.+++.    |+||||+|+..|+.+++++|++.|     ++++      .++..|+||||
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g-----~~~~------~~~~~g~t~L~   64 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLENG-----ADIN------SQDKNGNTALH   64 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTT-----TCTT-------BSTTSSBHHH
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhc-----cccc------ccCCCCCCHHH
Confidence            789999999999999996 4655554    899999999999999999999999     7777      78899999999


Q ss_pred             HHHHcCCHHHHHhhhh
Q 041026          133 EALFMLGRVNVRRTNT  148 (149)
Q Consensus       133 ~A~~~~~~~~~~~L~~  148 (149)
                      +|+..|+.+++++|.+
T Consensus        65 ~A~~~~~~~~~~~Ll~   80 (89)
T PF12796_consen   65 YAAENGNLEIVKLLLE   80 (89)
T ss_dssp             HHHHTTHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            9999999999999864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.77  E-value=5.9e-18  Score=94.23  Aligned_cols=105  Identities=15%  Similarity=0.163  Sum_probs=91.8

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcC
Q 041026           15 KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAG   94 (149)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g   94 (149)
                      ...+.|+++.|..+-++..+..+-+  .+... .|++|||+|+-+|+.+++++|+. .|++++.+|+.|-|||..|+..|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~n--Vn~~~-ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLN--VNEIY-GGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHcccc--HHHHh-CCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHh
Confidence            3567899999999999999998855  55544 78999999999999999999995 59999999999999999999999


Q ss_pred             CHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHH
Q 041026           95 KLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREA  134 (149)
Q Consensus        95 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  134 (149)
                      +.++|++|++.|     ++-.      .+...|.+.+..+
T Consensus        79 H~~cVklLL~~G-----Adrt------~~~PdG~~~~eat  107 (117)
T KOG4214|consen   79 HRDCVKLLLQNG-----ADRT------IHAPDGTALIEAT  107 (117)
T ss_pred             hHHHHHHHHHcC-----cccc------eeCCCchhHHhhc
Confidence            999999999999     7766      6777777777644

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.77  E-value=1.6e-17  Score=109.55  Aligned_cols=127  Identities=21%  Similarity=0.196  Sum_probs=116.0

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCc-----HHHHHHHHHhCCc---ceecc
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGH-----GEISAKIAQYYPF---FINKT   79 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~Ll~~~~~---~~~~~   79 (149)
                      ...+..+.++++.++..+...++.+++..+.+  ++..+..|.||+|+|+..++     .++++.|++. +.   ..+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~  143 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGAD--VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLR  143 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCC--cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCCcccc
Confidence            34556789999999999999999999999999  79999999999999999999     9999999964 66   67777


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           80 NNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        80 ~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |..|.||||+|+..|+.+++++|++.+     ++..      .++..|.|++++|+..++.++++.+.+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~-----~~~~------~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAG-----ADPN------SRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcC-----CCCc------ccccCCCcchhhhcccchHHHHHHHHh
Confidence            999999999999999999999999998     7776      679999999999999999999998865

>PHA02792 ankyrin-like protein; Provisional

Probab=99.77  E-value=5.4e-18  Score=124.54  Aligned_cols=128  Identities=9%  Similarity=-0.026  Sum_probs=110.4

Q ss_pred             ccccCCCCCCHHHHHH-HhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHH-hCcHHHHHHHHHhCCcce--------
Q 041026            7 VHLNDTTNKSPLSLAI-EMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAK-YGHGEISAKIAQYYPFFI--------   76 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~-~~~~~~~~~Ll~~~~~~~--------   76 (149)
                      .+..+.+|.+++|+-+ ..|+.+++++|+.+|++  .+.++..+.+++++|+. .++.+++++|++. |+++        
T Consensus        64 ~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAd--vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~  140 (631)
T PHA02792         64 VDYKNINDFDIFEYLCSDNIDIELLKLLISKGLE--INSIKNGINIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGY  140 (631)
T ss_pred             CCcCccCCccHHHHHHHhcccHHHHHHHHHcCCC--cccccCCCCcceeEeecCCCChHHHHHHHHC-CCCcccccccCc
Confidence            3556788999998755 57999999999999999  88888889999999966 6999999999965 6542        


Q ss_pred             ----------------------------ecccCCCCcHHHHHHHcC-------CHHHHHHHHHhhhcCCCCCCCCccccc
Q 041026           77 ----------------------------NKTNNQGDTPLHCAARAG-------KLNTATVLVDFAKHIPSTSQPPVDLLR  121 (149)
Q Consensus        77 ----------------------------~~~~~~g~tplh~a~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~~~~~  121 (149)
                                                  +..|..|.||||+|+..+       +.++++.|+++|     ++++      
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g-----~~~~------  209 (631)
T PHA02792        141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHE-----KEMR------  209 (631)
T ss_pred             chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCC-----CCcC------
Confidence                                        244567999999999999       899999999999     8777      


Q ss_pred             cccCCCCCHHHHHHHcC--CHHHHHhhhh
Q 041026          122 MENAMGNTVLREALFML--GRVNVRRTNT  148 (149)
Q Consensus       122 ~~~~~g~t~l~~A~~~~--~~~~~~~L~~  148 (149)
                      ..+..|.||||+|+.+.  ..|++++|.+
T Consensus       210 ~~d~~g~t~l~~~~~~~~i~~ei~~~L~~  238 (631)
T PHA02792        210 YYTYREHTTLYYYVDKCDIKREIFDALFD  238 (631)
T ss_pred             ccCCCCChHHHHHHHcccchHHHHHHHHh
Confidence            78889999999999999  8999998854

>PHA02792 ankyrin-like protein; Provisional

Probab=99.76  E-value=3.1e-17  Score=120.61  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=99.6

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCC--CcHHHHHHHhCcHH---HHHHHHHhCCcceecccCCCCcHH
Q 041026           13 TNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSP--FSLLDVAAKYGHGE---ISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~~~l~~a~~~~~~~---~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      ....+++.|+..|+.+++++|+++|++  ++.++..|  .||||.|......+   ++++|+ .+|++++.+|..|.|||
T Consensus       338 ~~~n~~~~Aa~~gn~eIVelLIs~GAD--IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLI-s~GADIN~kD~~G~TPL  414 (631)
T PHA02792        338 KHINKYFQKFDNRDPKVVEYILKNGNV--VVEDDDNIINIMPLFPTLSIHESDVLSILKLCK-PYIDDINKIDKHGRSIL  414 (631)
T ss_pred             CcchHHHHHHHcCCHHHHHHHHHcCCc--hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHH-hcCCccccccccCcchH
Confidence            356678999999999999999999999  77777664  68999877766543   578888 57999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHH---cCCHHHH
Q 041026           88 HCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALF---MLGRVNV  143 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~---~~~~~~~  143 (149)
                      |+|+..++.+++++|+++|     ++++      .++..|.||+++|+.   .++.+++
T Consensus       415 h~Aa~~~n~eivelLLs~G-----ADIN------~kD~~G~TpL~~A~~~~~~~~~~i~  462 (631)
T PHA02792        415 YYCIESHSVSLVEWLIDNG-----ADIN------ITTKYGSTCIGICVILAHACIPEIA  462 (631)
T ss_pred             HHHHHcCCHHHHHHHHHCC-----CCCC------CcCCCCCCHHHHHHHHHhcccHHHH
Confidence            9999999999999999999     8777      899999999999976   3444443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=6.5e-19  Score=117.07  Aligned_cols=114  Identities=26%  Similarity=0.153  Sum_probs=98.9

Q ss_pred             HHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHH
Q 041026           22 IEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATV  101 (149)
Q Consensus        22 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~  101 (149)
                      |+.|+.--++..++.... +++.-|..|.+|||+|+..|+..+++.|++ .|+.+|..+....||||+|+..|+.++|..
T Consensus         8 cregna~qvrlwld~teh-dln~gddhgfsplhwaakegh~aivemll~-rgarvn~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEH-DLNVGDDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCccc-ccccccccCcchhhhhhhcccHHHHHHHHh-cccccccccCCCCcchhhhhhcccHHHHHH
Confidence            455655555665654443 588889999999999999999999999995 589999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          102 LVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       102 Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+++.     +|++      ..|.+|.||||+||.-|...+++=|..
T Consensus        86 ll~~k-----advn------avnehgntplhyacfwgydqiaedli~  121 (448)
T KOG0195|consen   86 LLSRK-----ADVN------AVNEHGNTPLHYACFWGYDQIAEDLIS  121 (448)
T ss_pred             HHHHh-----cccc------hhhccCCCchhhhhhhcHHHHHHHHHh
Confidence            99998     8777      899999999999999999998886654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=8.6e-18  Score=118.98  Aligned_cols=128  Identities=19%  Similarity=0.166  Sum_probs=112.4

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHh----------------
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQY----------------   71 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~----------------   71 (149)
                      +..+.+|.|+||.+|.-.+.++++++++.++.  ++..|..++||+|.|+..++..++.+|++.                
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~--Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~d  144 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGAN--VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYD  144 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCC--ccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccc
Confidence            56678999999999999999999999999999  999999999999999999999999999865                


Q ss_pred             ------------------------------------------CCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcC
Q 041026           72 ------------------------------------------YPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI  109 (149)
Q Consensus        72 ------------------------------------------~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~  109 (149)
                                                                .|...+..+..|.|.||.|+..|..+...+|++.|   
T Consensus       145 l~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag---  221 (527)
T KOG0505|consen  145 LAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAG---  221 (527)
T ss_pred             cccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhc---
Confidence                                                      23344445556899999999999999999999999   


Q ss_pred             CCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          110 PSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       110 ~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                        .+++      .+|..|+||||.|+.-|+.++.++|..
T Consensus       222 --~~~~------~~D~dgWtPlHAAA~Wg~~~~~elL~~  252 (527)
T KOG0505|consen  222 --YSVN------IKDYDGWTPLHAAAHWGQEDACELLVE  252 (527)
T ss_pred             --cCcc------cccccCCCcccHHHHhhhHhHHHHHHH
Confidence              7777      899999999999999999999997753

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.71  E-value=2.6e-17  Score=120.73  Aligned_cols=138  Identities=20%  Similarity=0.027  Sum_probs=118.7

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      +++..|..|.+|||+|++.|+.++++.++.....  ++..+-.|.+|||.|++.++.+++.+|+ .++++.-.++.++.|
T Consensus        74 ~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~--~na~~~e~~tplhlaaqhgh~dvv~~Ll-~~~adp~i~nns~~t  150 (854)
T KOG0507|consen   74 LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI--LNAVNIENETPLHLAAQHGHLEVVFYLL-KKNADPFIRNNSKET  150 (854)
T ss_pred             hhhhhhccCcceEEehhhcCcchHHHHHHhcccC--CCcccccCcCccchhhhhcchHHHHHHH-hcCCCccccCccccc
Confidence            4667789999999999999999999999999866  8889999999999999999999999999 568999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhhC
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNTA  149 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~a  149 (149)
                      +|..|++.|+.++++.|++......   ......-..++..+-+|||+|+++||.++++.|+.|
T Consensus       151 ~ldlA~qfgr~~Vvq~ll~~~~~~~---~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~a  211 (854)
T KOG0507|consen  151 VLDLASRFGRAEVVQMLLQKKFPVQ---SSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEA  211 (854)
T ss_pred             HHHHHHHhhhhHHHHHHhhhccchh---hcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhc
Confidence            9999999999999999998843311   111111235677888999999999999999998865

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.71  E-value=2.4e-16  Score=120.48  Aligned_cols=131  Identities=21%  Similarity=0.146  Sum_probs=94.3

Q ss_pred             ccccCCCCCCHHH-HHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhC---cHHHHHHHHHhCCc-----cee
Q 041026            7 VHLNDTTNKSPLS-LAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYG---HGEISAKIAQYYPF-----FIN   77 (149)
Q Consensus         7 ~~~~d~~g~t~l~-~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~Ll~~~~~-----~~~   77 (149)
                      +|..|..|.|||| .|+..++.++++.|++.++      .+..|.||||.|+..+   ...++..+......     ..+
T Consensus        45 in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~  118 (743)
T TIGR00870        45 INCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELAN  118 (743)
T ss_pred             CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhc
Confidence            5667889999999 8888889999999998765      4667899999988732   22233444322110     011


Q ss_pred             ----cccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccc--------cccCCCCCHHHHHHHcCCHHHHHh
Q 041026           78 ----KTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLR--------MENAMGNTVLREALFMLGRVNVRR  145 (149)
Q Consensus        78 ----~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~--------~~~~~g~t~l~~A~~~~~~~~~~~  145 (149)
                          .....|.||||+|+..|+.+++++|+++|     ++++......        .....|.|||++|+..++.+++++
T Consensus       119 ~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~G-----Adv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~l  193 (743)
T TIGR00870       119 DQYTSEFTPGITALHLAAHRQNYEIVKLLLERG-----ASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVAL  193 (743)
T ss_pred             cccccccCCCCcHHHHHHHhCCHHHHHHHHhCC-----CCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHH
Confidence                12346999999999999999999999999     6665210000        112468999999999999999998


Q ss_pred             hhh
Q 041026          146 TNT  148 (149)
Q Consensus       146 L~~  148 (149)
                      |.+
T Consensus       194 Ll~  196 (743)
T TIGR00870       194 LSE  196 (743)
T ss_pred             Hhc
Confidence            864

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=1.9e-16  Score=112.45  Aligned_cols=117  Identities=19%  Similarity=0.133  Sum_probs=99.4

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHH
Q 041026           18 LSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLN   97 (149)
Q Consensus        18 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~   97 (149)
                      |.-|+..|.+++|+..+....+  +...+..|.|+||.|+..||.++|+||++ +|+++|..|.+|+||||+|+..++..
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D--pSqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD--PSQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC--CCCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhhhcCchH
Confidence            3557889999999999999888  88899999999999999999999999995 69999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHH--HcCCHHHHHhhh
Q 041026           98 TATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL--FMLGRVNVRRTN  147 (149)
Q Consensus        98 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~--~~~~~~~~~~L~  147 (149)
                      +++.|++.|..     +     +-.+-..+.|+..-+=  +.|+..|.+||-
T Consensus       631 ~ckqLVe~Gaa-----v-----fAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  631 MCKQLVESGAA-----V-----FASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHhccce-----E-----EeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999999933     2     2234556777776543  357778888774

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.67  E-value=7.5e-16  Score=116.06  Aligned_cols=109  Identities=14%  Similarity=0.105  Sum_probs=91.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCH
Q 041026           17 PLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKL   96 (149)
Q Consensus        17 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~   96 (149)
                      .|+.|+..|+.+.++.|++.+++  ++..+..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad--in~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD--PNCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            47889999999999999999998  88999999999999999999999999995 6999999999999999999999999


Q ss_pred             HHHHHHHHhhhcC--CCCCCCCccccccccCCCCCHHHHH
Q 041026           97 NTATVLVDFAKHI--PSTSQPPVDLLRMENAMGNTVLREA  134 (149)
Q Consensus        97 ~~v~~Ll~~~~~~--~~~~~~~~~~~~~~~~~g~t~l~~A  134 (149)
                      +++++|++++...  .|++.+      ..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~------~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAK------PDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCC------ccccCCCCccchh
Confidence            9999999983221  114443      4555555555543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.66  E-value=4.5e-16  Score=80.74  Aligned_cols=54  Identities=31%  Similarity=0.399  Sum_probs=38.3

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHH
Q 041026           49 PFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV  103 (149)
Q Consensus        49 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll  103 (149)
                      |.||||+|+..|+.+++++|++. +.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56788888888888888888854 7788888888888888888888888888775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.65  E-value=2.1e-16  Score=82.45  Aligned_cols=50  Identities=30%  Similarity=0.399  Sum_probs=22.6

Q ss_pred             cceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHH
Q 041026           74 FFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREA  134 (149)
Q Consensus        74 ~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  134 (149)
                      .+++.+|..|.||||+|+..|+.+++++|++.+     ++.+      .+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-----~d~~------~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-----ADPN------AKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT-------TT---------TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-----CCCC------CCcCCCCCHHHhC
Confidence            556666666666666666666666666666555     5555      6666666666665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.64  E-value=8.5e-16  Score=79.68  Aligned_cols=54  Identities=30%  Similarity=0.303  Sum_probs=44.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           83 GDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        83 g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |.||||+|++.|+.+++++|++.+     .+++      .+|..|.||+|+|+..|+.+++++|.
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-----~din------~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-----ADIN------AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-----SGTT-------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-----CCCC------CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999998     7666      78999999999999999999999984

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.64  E-value=4.4e-15  Score=98.75  Aligned_cols=123  Identities=24%  Similarity=0.232  Sum_probs=110.3

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceec-ccCCCCcHHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINK-TNNQGDTPLHCA   90 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~tplh~a   90 (149)
                      .+-.+||..+.-.++.+....|++.-..  .+..|..|.++|..|+..|+.+.++.|++ .|+++|. ++..+.||||.|
T Consensus        10 d~~~~~Lle~i~Kndt~~a~~LLs~vr~--vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   10 DAPKSPLLEAIDKNDTEAALALLSTVRQ--VNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             cchhhHHHHHHccCcHHHHHHHHHHhhh--hhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHHHH
Confidence            3567899999999999999998887665  78999999999999999999999999995 6899886 467799999999


Q ss_pred             HHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           91 ARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        91 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +.+|+.++.++|++.|     +...      ..|.-|.|+-++|+.-|+.++|..+.+
T Consensus        87 ALSGn~dvcrllldaG-----a~~~------~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAG-----ARMY------LVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHcCCchHHHHHHhcc-----Cccc------cccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999999     6666      688999999999999999999998765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.64  E-value=1.4e-15  Score=107.94  Aligned_cols=130  Identities=20%  Similarity=0.109  Sum_probs=112.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCH
Q 041026           17 PLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKL   96 (149)
Q Consensus        17 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~   96 (149)
                      .+..||..+..+-+..++..++.  ++..+..|.|++|.++...+.+|+++|++ ++.+++..|..++||||.|+-.|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~--~~~~n~DglTalhq~~id~~~e~v~~l~e-~ga~Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS--PNLCNVDGLTALHQACIDDNLEMVKFLVE-NGANVNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC--ccccCCccchhHHHHHhcccHHHHHHHHH-hcCCccccccccCCcchhhcccccH
Confidence            45678899999999999999988  78889999999999999999999999995 6999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCC--C----------------------------------------------ccccccccCCCC
Q 041026           97 NTATVLVDFAKHIPSTSQP--P----------------------------------------------VDLLRMENAMGN  128 (149)
Q Consensus        97 ~~v~~Ll~~~~~~~~~~~~--~----------------------------------------------~~~~~~~~~~g~  128 (149)
                      .++.+|+.+|......+..  .                                              ....++....|-
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~  199 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGA  199 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccc
Confidence            9999999999662210000  0                                              445566777799


Q ss_pred             CHHHHHHHcCCHHHHHhhhhC
Q 041026          129 TVLREALFMLGRVNVRRTNTA  149 (149)
Q Consensus       129 t~l~~A~~~~~~~~~~~L~~a  149 (149)
                      |.+|.|+..|..+.+++|.+|
T Consensus       200 T~lHvAaa~Gy~e~~~lLl~a  220 (527)
T KOG0505|consen  200 TALHVAAANGYTEVAALLLQA  220 (527)
T ss_pred             hHHHHHHhhhHHHHHHHHHHh
Confidence            999999999999999999875

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=1e-14  Score=87.73  Aligned_cols=92  Identities=26%  Similarity=0.254  Sum_probs=82.1

Q ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCcccccccc
Q 041026           45 SGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMEN  124 (149)
Q Consensus        45 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  124 (149)
                      ++..|.||||+|+..++.+++++|++ .+.+.+..+..|.||+|+|+..++.+++++|++.+     ...+      ..+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~-----~~~~------~~~   70 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-----ADVN------ARD   70 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCcc------ccC
Confidence            45678999999999999999999995 56777888999999999999999999999999988     5444      677


Q ss_pred             CCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          125 AMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       125 ~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..+.||+|+|+..++.+++++|.+
T Consensus        71 ~~~~~~l~~a~~~~~~~~~~~L~~   94 (126)
T cd00204          71 KDGNTPLHLAARNGNLDVVKLLLK   94 (126)
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHH
Confidence            899999999999999999999864

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.59  E-value=1.7e-15  Score=78.99  Aligned_cols=55  Identities=29%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             HHHhC-CCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHH
Q 041026           33 ILRSL-PSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCA   90 (149)
Q Consensus        33 ll~~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a   90 (149)
                      |++.+ .+  ++..|..|+||||+|+.+|+.+++++|+ ..+++++.+|..|+||||+|
T Consensus         1 LL~~~~~~--~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPAD--VNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T----TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCC--CcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            45556 33  7888899999999999999999999999 67899999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.58  E-value=1.6e-14  Score=108.97  Aligned_cols=85  Identities=24%  Similarity=0.145  Sum_probs=79.4

Q ss_pred             HHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHH
Q 041026           52 LLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVL  131 (149)
Q Consensus        52 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l  131 (149)
                      .|+.|+..|+.+.++.|++ .|++++.+|..|.||||+|+..|+.+++++|++.|     ++++      .+|..|.|||
T Consensus        85 ~L~~aa~~G~~~~vk~LL~-~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-----advn------~~d~~G~TpL  152 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLT-GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG-----ADPT------LLDKDGKTPL  152 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC-----CCCC------CCCCCCCCHH
Confidence            4788999999999999995 68999999999999999999999999999999999     8777      8999999999


Q ss_pred             HHHHHcCCHHHHHhhhh
Q 041026          132 REALFMLGRVNVRRTNT  148 (149)
Q Consensus       132 ~~A~~~~~~~~~~~L~~  148 (149)
                      |+|+..|+.+++++|.+
T Consensus       153 h~A~~~g~~~iv~~Ll~  169 (664)
T PTZ00322        153 ELAEENGFREVVQLLSR  169 (664)
T ss_pred             HHHHHCCcHHHHHHHHh
Confidence            99999999999999864

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.53  E-value=7.6e-14  Score=91.96  Aligned_cols=97  Identities=24%  Similarity=0.261  Sum_probs=90.3

Q ss_pred             cccCCCCCCHHHHHHHhCC-----HHHHHHHHHhCC--CCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceeccc
Q 041026            8 HLNDTTNKSPLSLAIEMEN-----TDVLEYILRSLP--SGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTN   80 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~-----~~~~~~ll~~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~   80 (149)
                      +.+|.+|.||+|+|+..++     .++++.|++.++  . ..+..+..|.||||+|+..|+.+++..|++ .+.+++..+
T Consensus       100 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~-~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~  177 (235)
T COG0666         100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD-VNNLRDEDGNTPLHWAALNGDADIVELLLE-AGADPNSRN  177 (235)
T ss_pred             ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC-CccccCCCCCchhHHHHHcCchHHHHHHHh-cCCCCcccc
Confidence            7889999999999999999     999999999999  3 366779999999999999999999999995 588999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhh
Q 041026           81 NQGDTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        81 ~~g~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                      ..|.|+++.|+..++.++++.++..+
T Consensus       178 ~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         178 SYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999864

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.53  E-value=6.9e-14  Score=78.10  Aligned_cols=85  Identities=22%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             cHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCH
Q 041026           51 SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTV  130 (149)
Q Consensus        51 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~  130 (149)
                      -.+.|++.+|..+-++..+. .|.+++..- .|++|||+|+-.|..++++||+..|     ++++      .+|+.|-||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~-~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iG-----A~i~------~kDKygITP   70 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVN-EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIG-----ANIQ------DKDKYGITP   70 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHH-ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhc-----cccC------CccccCCcH
Confidence            35678889999988888773 466666554 8999999999999999999999999     8888      899999999


Q ss_pred             HHHHHHcCCHHHHHhhhh
Q 041026          131 LREALFMLGRVNVRRTNT  148 (149)
Q Consensus       131 l~~A~~~~~~~~~~~L~~  148 (149)
                      |--|+..||.++|++|.+
T Consensus        71 LLsAvwEGH~~cVklLL~   88 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQ   88 (117)
T ss_pred             HHHHHHHhhHHHHHHHHH
Confidence            999999999999999864

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.50  E-value=1.7e-13  Score=101.74  Aligned_cols=128  Identities=16%  Similarity=0.138  Sum_probs=104.7

Q ss_pred             ccccCCCCCCHHHHHHHh---CCHHHHHHHHHhCCCCcccc----CCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecc
Q 041026            7 VHLNDTTNKSPLSLAIEM---ENTDVLEYILRSLPSGISWS----SGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKT   79 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~----~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~   79 (149)
                      ++.+-.-|.|.||.|...   ++-++++.|++..+. .++.    ....|.||||+|+.+.+.++|+.|++ .|++++++
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~-lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aR  213 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPK-LINDIYTSEEYYGQSALHIAIVNRDAELVRLLLA-AGADVHAR  213 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHH-HhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHH-cCCchhhH
Confidence            344456799999999873   555889999988775 3332    34579999999999999999999995 57777643


Q ss_pred             c-----------------------CCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHH
Q 041026           80 N-----------------------NQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALF  136 (149)
Q Consensus        80 ~-----------------------~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  136 (149)
                      -                       ..|..||..|+--++.+++++|+++|     +|++      .+|..|+|.||..+.
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~g-----Ad~~------aqDS~GNTVLH~lVi  282 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHG-----ADPN------AQDSNGNTVLHMLVI  282 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcC-----CCCC------ccccCCChHHHHHHH
Confidence            2                       14788999999999999999999999     8888      999999999999999


Q ss_pred             cCCHHHHHhhh
Q 041026          137 MLGRVNVRRTN  147 (149)
Q Consensus       137 ~~~~~~~~~L~  147 (149)
                      +-..+|..++.
T Consensus       283 ~~~~~My~~~L  293 (782)
T KOG3676|consen  283 HFVTEMYDLAL  293 (782)
T ss_pred             HHHHHHHHHHH
Confidence            87777777654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=1.2e-12  Score=87.37  Aligned_cols=96  Identities=19%  Similarity=0.159  Sum_probs=86.8

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCcccc-CCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWS-SGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      -++..|..|.|+|..|+..|+.+.++.+++.+++  +|. ....++|||+.|+..|+.++.+.|++. |+.....+.-|+
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaD--vN~~qhg~~YTpLmFAALSGn~dvcrlllda-Ga~~~~vNsvgr  113 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGAD--VNDKQHGTLYTPLMFAALSGNQDVCRLLLDA-GARMYLVNSVGR  113 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCC--cCcccccccccHHHHHHHcCCchHHHHHHhc-cCccccccchhh
Confidence            3678999999999999999999999999999999  544 467899999999999999999999964 899999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHH
Q 041026           85 TPLHCAARAGKLNTATVLVD  104 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~  104 (149)
                      |+-.+|+.-|+.++|..+-.
T Consensus       114 TAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  114 TAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             hHHHHHHHhcchHHHHHHhc
Confidence            99999999999998876643

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.43  E-value=8.3e-14  Score=106.68  Aligned_cols=123  Identities=17%  Similarity=0.085  Sum_probs=89.7

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceec-ccCCCCcHHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINK-TNNQGDTPLHCA   90 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~tplh~a   90 (149)
                      .+-.|+|-.||..|+.+.+..|+.+|+.  +...|..|.+||.+|+..|+..+|+.|+ +..+++.. .|+.+.|+|.+|
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rgan--iehrdkkgf~plImaatagh~tvV~~ll-k~ha~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGAN--IEHRDKKGFVPLIMAATAGHITVVQDLL-KAHADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhccc--ccccccccchhhhhhcccCchHHHHHHH-hhhhhhhhhcccccCceEEEe
Confidence            3456777777888888888888877777  7777777778888877778877777777 34566654 366777777777


Q ss_pred             HHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           91 ARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        91 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |..|+.+++++|+.+|     ++.+      .++..++|||.+|..-|+.+++.+|..
T Consensus       832 csggr~~vvelLl~~g-----anke------hrnvsDytPlsla~Sggy~~iI~~llS  878 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAG-----ANKE------HRNVSDYTPLSLARSGGYTKIIHALLS  878 (2131)
T ss_pred             cCCCcchHHHHHHHhh-----cccc------ccchhhcCchhhhcCcchHHHHHHHhh
Confidence            7777777777777777     6555      566677777777777777777776654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.34  E-value=1.7e-12  Score=91.56  Aligned_cols=95  Identities=16%  Similarity=0.074  Sum_probs=89.0

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHH
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHC   89 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~   89 (149)
                      ++.++..++++|++.|+...++.+.-.+.+  ++.+|+..+|+||.|+.-|+.+++++|++..+.+++.+|.+|+|||.-
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D--~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMD--LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhccc--ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            345677789999999999999999999988  999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhh
Q 041026           90 AARAGKLNTATVLVDFA  106 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~  106 (149)
                      |...++.+++++|-+..
T Consensus       580 A~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hHhcCcHHHHHHHHHHh
Confidence            99999999999998765

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.32  E-value=2.2e-12  Score=99.13  Aligned_cols=128  Identities=16%  Similarity=0.119  Sum_probs=101.1

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccc-cCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW-SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      .-+|..|++||.+|+-.||..+|..|+...++  ++ ..|+.+.|+|.+||..|+.++++.|+ ..+++-..++....||
T Consensus       784 ehrdkkgf~plImaatagh~tvV~~llk~ha~--veaQsdrtkdt~lSlacsggr~~vvelLl-~~gankehrnvsDytP  860 (2131)
T KOG4369|consen  784 EHRDKKGFVPLIMAATAGHITVVQDLLKAHAD--VEAQSDRTKDTMLSLACSGGRTRVVELLL-NAGANKEHRNVSDYTP  860 (2131)
T ss_pred             cccccccchhhhhhcccCchHHHHHHHhhhhh--hhhhcccccCceEEEecCCCcchHHHHHH-HhhccccccchhhcCc
Confidence            34688999999999999999999999998887  44 45788999999999999999999999 4577777788889999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |.+|...|..++|+.|+..|     ++++    -+.-.+.|-.||++|...||.+..+.|.
T Consensus       861 lsla~Sggy~~iI~~llS~G-----seIn----SrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  861 LSLARSGGYTKIIHALLSSG-----SEIN----SRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             hhhhcCcchHHHHHHHhhcc-----cccc----cccccccCcchhhhhhhccccHHHHHHh
Confidence            99999999999999999998     4443    1123445566666666666666555443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=1.1e-11  Score=88.68  Aligned_cols=99  Identities=10%  Similarity=0.070  Sum_probs=84.5

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceec-ccCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINK-TNNQG   83 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~g   83 (149)
                      +.....+..|.|+||-|+-.||.++|+||++.+++  .|..|..|+||||.|+..++..+++.|++. |+-+-. .-.++
T Consensus       574 ~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan--VNa~DSdGWTPLHCAASCNnv~~ckqLVe~-GaavfAsTlSDm  650 (752)
T KOG0515|consen  574 TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN--VNAADSDGWTPLHCAASCNNVPMCKQLVES-GAAVFASTLSDM  650 (752)
T ss_pred             cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc--ccCccCCCCchhhhhhhcCchHHHHHHHhc-cceEEeeecccc
Confidence            45567788999999999999999999999999999  999999999999999999999999999965 554444 44667


Q ss_pred             CcHHHHHH--HcCCHHHHHHHHHhh
Q 041026           84 DTPLHCAA--RAGKLNTATVLVDFA  106 (149)
Q Consensus        84 ~tplh~a~--~~g~~~~v~~Ll~~~  106 (149)
                      .|+.--|-  ..|..+|.+||....
T Consensus       651 eTa~eKCee~eeGY~~CsqyL~~vq  675 (752)
T KOG0515|consen  651 ETAAEKCEEMEEGYDQCSQYLYGVQ  675 (752)
T ss_pred             cchhhhcchhhhhHHHHHHHHHHHH
Confidence            89988774  467889999997754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.27  E-value=4e-11  Score=85.23  Aligned_cols=94  Identities=21%  Similarity=0.166  Sum_probs=81.4

Q ss_pred             ccCCCCCCH------HHHHHHhCCHHHHHHHHHhCCCCccccCC-CCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccC
Q 041026            9 LNDTTNKSP------LSLAIEMENTDVLEYILRSLPSGISWSSG-KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNN   81 (149)
Q Consensus         9 ~~d~~g~t~------l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~   81 (149)
                      -+|.+|.+.      ||..++.|+.++.-.|+..|++  .|... ..|.||||+|+..|+..-++.|+ .||++++.+|.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~--~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~-vYGAD~~a~d~  198 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQ--ANFFHPEKGNTPLHVAAKAGQILQAELLA-VYGADPGAQDS  198 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccc--cCCCCcccCCchhHHHHhccchhhhhHHh-hccCCCCCCCC
Confidence            456666554      8999999999999999999999  66654 46899999999999999999999 78999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh
Q 041026           82 QGDTPLHCAARAGKLNTATVLVDF  105 (149)
Q Consensus        82 ~g~tplh~a~~~g~~~~v~~Ll~~  105 (149)
                      +|+||+.+|-+.|+.++.+-|++.
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHHH
Confidence            999999999999998877666553

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.25  E-value=7.8e-12  Score=93.62  Aligned_cols=84  Identities=17%  Similarity=0.129  Sum_probs=72.8

Q ss_pred             ccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccC-CCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccc
Q 041026           41 ISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNN-QGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDL  119 (149)
Q Consensus        41 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  119 (149)
                      ..+++|..|+++||+++..+..++++||++ +|+++..+|. .|+||||-|..+|+++++..|+.+|     ....    
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-----~SL~----  113 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-----RSLR----  113 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHhcC-----CceE----
Confidence            577889999999999999999999999995 5899888874 6899999999999999999999988     4444    


Q ss_pred             cccccCCCCCHHHHHHH
Q 041026          120 LRMENAMGNTVLREALF  136 (149)
Q Consensus       120 ~~~~~~~g~t~l~~A~~  136 (149)
                        ++|..|..||+..++
T Consensus       114 --i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  114 --IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             --EecccCCCHHHHHhh
Confidence              889999999998876

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.22  E-value=1.5e-11  Score=86.95  Aligned_cols=91  Identities=20%  Similarity=0.160  Sum_probs=79.9

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCC
Q 041026           48 SPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMG  127 (149)
Q Consensus        48 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g  127 (149)
                      .+...+.+|+..|....++.+. ..+.++..+|.+.+|+||.|+..|+.++++||+...          .++.+.+|.+|
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~-l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~----------kv~~~~kDRw~  573 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFA-LQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNAC----------KVDPDPKDRWG  573 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHH-HhcccccccccccchhheeecccCceeHHHHHHHHH----------cCCCChhhccC
Confidence            3456789999999999887665 458999999999999999999999999999999987          23445899999


Q ss_pred             CCHHHHHHHcCCHHHHHhhhhC
Q 041026          128 NTVLREALFMLGRVNVRRTNTA  149 (149)
Q Consensus       128 ~t~l~~A~~~~~~~~~~~L~~a  149 (149)
                      .|||.-|...+|.+++++|++|
T Consensus       574 rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  574 RTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             CCcchHhHhcCcHHHHHHHHHH
Confidence            9999999999999999999875

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.19  E-value=1.7e-11  Score=91.85  Aligned_cols=85  Identities=19%  Similarity=0.330  Sum_probs=78.0

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCC-CCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGK-SPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQG   83 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g   83 (149)
                      ++.+.+|..|+|+||+++..+...++++|+++|.+  +..+|. .|+||||.|+.+|+++++-.|+ .+|..+..+|+.|
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid--v~vqD~ESG~taLHRaiyyG~idca~lLL-~~g~SL~i~Dkeg  119 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID--VFVQDEESGYTALHRAIYYGNIDCASLLL-SKGRSLRIKDKEG  119 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCce--eeeccccccchHhhHhhhhchHHHHHHHH-hcCCceEEecccC
Confidence            45788999999999999999999999999999998  766665 7999999999999999999999 5789999999999


Q ss_pred             CcHHHHHHH
Q 041026           84 DTPLHCAAR   92 (149)
Q Consensus        84 ~tplh~a~~   92 (149)
                      .+||..-++
T Consensus       120 lsplq~~~r  128 (1267)
T KOG0783|consen  120 LSPLQFLSR  128 (1267)
T ss_pred             CCHHHHHhh
Confidence            999988776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.13  E-value=4.2e-10  Score=81.63  Aligned_cols=118  Identities=25%  Similarity=0.161  Sum_probs=93.7

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcc-eecccCCCCcHHHHHHHcCCH
Q 041026           18 LSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFF-INKTNNQGDTPLHCAARAGKL   96 (149)
Q Consensus        18 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~~~g~tplh~a~~~g~~   96 (149)
                      +.-|+..+++--+...-..|.+  +-..+....+.||+|+..|+.++++++++..+.. ++..|..|.|.||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~--ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS--LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc--eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            3455666665555555556666  6667777778999999999999999999765543 567788999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           97 NTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        97 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .+..+|++.|     +...      .+|..|.||-.-|-..|.++++-+|++
T Consensus       948 ~vc~~lvdag-----asl~------ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  948 AVCQLLVDAG-----ASLR------KTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHHhcc-----hhhe------ecccCCCChHHHHHhcCCchHHHHHhh
Confidence            9999999998     5555      689999999999999999999988864

>PF13606 Ank_3: Ankyrin repeat

Probab=99.08  E-value=2.2e-10  Score=51.65  Aligned_cols=25  Identities=36%  Similarity=0.679  Sum_probs=22.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhh
Q 041026           82 QGDTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        82 ~g~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                      +|+||||+|++.|+.+++++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            5789999999999999999999988

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.05  E-value=4.9e-10  Score=81.30  Aligned_cols=98  Identities=22%  Similarity=0.232  Sum_probs=89.8

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHH
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      -.++.+.++.||+|++.|+-++++|++++++...++..+..|.|+||.|+..++-.+..+|++ .|+.+...|..|.||-
T Consensus       893 l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvd-agasl~ktd~kg~tp~  971 (1004)
T KOG0782|consen  893 LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVD-AGASLRKTDSKGKTPQ  971 (1004)
T ss_pred             EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHh-cchhheecccCCCChH
Confidence            356788999999999999999999999999987777888999999999999999999999996 4889999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhh
Q 041026           88 HCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~  106 (149)
                      .-|-+.|+.++..+|-.+.
T Consensus       972 eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  972 ERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHhcCCchHHHHHhhhh
Confidence            9999999999999997664

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.04  E-value=1.1e-09  Score=78.48  Aligned_cols=82  Identities=22%  Similarity=0.294  Sum_probs=50.7

Q ss_pred             HHHHHHHhCcHHHHHH-HHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCH
Q 041026           52 LLDVAAKYGHGEISAK-IAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTV  130 (149)
Q Consensus        52 ~l~~a~~~~~~~~~~~-Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~  130 (149)
                      |+|+++.....+-... +.......++..|..|.||||+|+..|+.+.++.|+..+     +++.      .+|.+|++|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-----Adv~------~kN~~gWs~   91 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG-----ADVS------IKNNEGWSP   91 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC-----CCcc------ccccccccH
Confidence            4666666655544333 221223346666666777777777777777777777766     6555      667777777


Q ss_pred             HHHHHHcCCHHHHH
Q 041026          131 LREALFMLGRVNVR  144 (149)
Q Consensus       131 l~~A~~~~~~~~~~  144 (149)
                      ||.|+..|+.+++.
T Consensus        92 L~EAv~~g~~q~i~  105 (560)
T KOG0522|consen   92 LHEAVSTGNEQIIT  105 (560)
T ss_pred             HHHHHHcCCHHHHH
Confidence            77777776665554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.03  E-value=1.4e-09  Score=77.54  Aligned_cols=84  Identities=23%  Similarity=0.222  Sum_probs=74.1

Q ss_pred             HHHHHHHhCcHHHHHHHHHhCCcceeccc-CCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCH
Q 041026           52 LLDVAAKYGHGEISAKIAQYYPFFINKTN-NQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTV  130 (149)
Q Consensus        52 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~  130 (149)
                      -||..++.++.+..-.|+ ..|++.|..+ ..|.||||.|++.|+..-+++|+-+|     +|+.      ..|..|+||
T Consensus       136 QLhasvRt~nlet~LRll-~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-----AD~~------a~d~~GmtP  203 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLL-SLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG-----ADPG------AQDSSGMTP  203 (669)
T ss_pred             HHHHHhhcccHHHHHHHH-HcccccCCCCcccCCchhHHHHhccchhhhhHHhhcc-----CCCC------CCCCCCCcH
Confidence            378888999999766666 3589988876 57999999999999999999999999     8888      899999999


Q ss_pred             HHHHHHcCCHHHHHhhh
Q 041026          131 LREALFMLGRVNVRRTN  147 (149)
Q Consensus       131 l~~A~~~~~~~~~~~L~  147 (149)
                      +.+|-..||.++++.|.
T Consensus       204 ~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  204 VDYARQGGHHELAERLV  220 (669)
T ss_pred             HHHHHhcCchHHHHHHH
Confidence            99999999999998764

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.97  E-value=7.8e-10  Score=84.62  Aligned_cols=136  Identities=16%  Similarity=0.039  Sum_probs=108.6

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRS-LPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQG   83 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g   83 (149)
                      .........|.+.+|.++..+..-.+..+++- +..  ....+..|...+|. |..++.++.-.++.-.+..++.+|..|
T Consensus       565 ~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~--~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G  641 (975)
T KOG0520|consen  565 NLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG--DLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNG  641 (975)
T ss_pred             hccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC--chhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCC
Confidence            34455667899999999999999999999885 444  45567778888888 677778877766656788899999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           84 DTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        84 ~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +||||+|+..|+..++.-|++-|     ++.....+.......|.|+-.+|...|+.++.-+|..
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lg-----a~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELG-----ADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhc-----cccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            99999999999999999999888     3333222334566789999999999999999888764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.96  E-value=1.6e-09  Score=50.05  Aligned_cols=29  Identities=31%  Similarity=0.558  Sum_probs=26.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCC
Q 041026           82 QGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQP  115 (149)
Q Consensus        82 ~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~  115 (149)
                      +|.||||+|+..|+.+++++|+++|     ++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-----a~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-----ADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-----SCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-----CCCC
Confidence            5889999999999999999999998     6665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.94  E-value=2e-09  Score=48.46  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCC
Q 041026           13 TNKSPLSLAIEMENTDVLEYILRSLPS   39 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~~~~~   39 (149)
                      +|+||||+||+.|+.+++++|++.+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            467777777777777777777777665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.92  E-value=3.3e-09  Score=48.97  Aligned_cols=32  Identities=16%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCC
Q 041026           13 TNKSPLSLAIEMENTDVLEYILRSLPSGISWSSG   46 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~   46 (149)
                      +|.||||+|+..|+.+++++|++.+++  ++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~--~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD--INARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC--TTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC--CCCCC
Confidence            466777777777777777777776666  54443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.90  E-value=1e-08  Score=74.55  Aligned_cols=90  Identities=19%  Similarity=0.210  Sum_probs=76.3

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCccc--cCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCC
Q 041026           18 LSLAIEMENTDVLEYILRSLPSGISW--SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGK   95 (149)
Q Consensus        18 l~~a~~~~~~~~~~~ll~~~~~~~~~--~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~   95 (149)
                      |.-|+...+...+-.|+.++.....+  ..+..|.|+||+|+..|+..+.++|+ =+++++..+|..|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhhccc
Confidence            44566677888888999988762222  23456789999999999999999999 7899999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 041026           96 LNTATVLVDFAKH  108 (149)
Q Consensus        96 ~~~v~~Ll~~~~~  108 (149)
                      .+|+..|+.+|-.
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999833

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.87  E-value=1.4e-08  Score=72.99  Aligned_cols=90  Identities=24%  Similarity=0.225  Sum_probs=73.6

Q ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCC
Q 041026           16 SPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGK   95 (149)
Q Consensus        16 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~   95 (149)
                      .|+|+++.....+-+...+.......++..|..|.||||.|+..|+.+.++.|+ ..++++..++..|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll-~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILL-SAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHH-hcCCCccccccccccHHHHHHHcCC
Confidence            358999888777766664443333247778889999999999999999999999 4689999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 041026           96 LNTATVLVDFA  106 (149)
Q Consensus        96 ~~~v~~Ll~~~  106 (149)
                      .+++..++.+.
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            99888777664

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.85  E-value=1.4e-08  Score=73.86  Aligned_cols=85  Identities=21%  Similarity=0.094  Sum_probs=69.3

Q ss_pred             HHHHHHhCcHHHHHHHHHhCCcc--ee--cccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCC
Q 041026           53 LDVAAKYGHGEISAKIAQYYPFF--IN--KTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGN  128 (149)
Q Consensus        53 l~~a~~~~~~~~~~~Ll~~~~~~--~~--~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~  128 (149)
                      |..|+...+...+-.|+ .+|..  ++  .-+.+|.|+||+|+..|+..+.++|+.+|     +|+.      .+|.+|.
T Consensus       628 Ll~A~~~~Dl~t~~lLL-Ahg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-----~dv~------~rda~g~  695 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLL-AHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-----VDVM------ARDAHGR  695 (749)
T ss_pred             HHHHHHHHHHHHHHHHH-hccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-----ccce------ecccCCc
Confidence            44566666666677777 45543  33  23456799999999999999999999999     8887      8999999


Q ss_pred             CHHHHHHHcCCHHHHHhhhhC
Q 041026          129 TVLREALFMLGRVNVRRTNTA  149 (149)
Q Consensus       129 t~l~~A~~~~~~~~~~~L~~a  149 (149)
                      |+|.+|-..|..|++.+|.++
T Consensus       696 t~l~yar~a~sqec~d~llq~  716 (749)
T KOG0705|consen  696 TALFYARQAGSQECIDVLLQY  716 (749)
T ss_pred             hhhhhHhhcccHHHHHHHHHc
Confidence            999999999999999999764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.82  E-value=3.3e-08  Score=74.66  Aligned_cols=128  Identities=13%  Similarity=-0.051  Sum_probs=98.5

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCC--CccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPS--GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHC   89 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~   89 (149)
                      ..+.--+..||..|+...++..++....  .+.|..|..|+++++.|..+.+.+++++|++ ++...       ..+|.+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~-~~~~~-------gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLD-TSSEE-------GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhc-Ccccc-------chHHHH
Confidence            4455567889999999999999886654  4578889999999999999999999999995 34333       568999


Q ss_pred             HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           90 AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+..|..++|++++.+.....+.... ...-...-..+-||+.+|+..+++||+++|.+
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~-~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~  152 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERS-GDANSPHFTPDITPLMLAAHLNNFEILQCLLT  152 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccc-cccCcccCCCCccHHHHHHHhcchHHHHHHHH
Confidence            99999999999999886321111110 00011344577899999999999999999864

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.55  E-value=9.1e-08  Score=73.42  Aligned_cols=89  Identities=24%  Similarity=0.179  Sum_probs=76.6

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCC
Q 041026           47 KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAM  126 (149)
Q Consensus        47 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  126 (149)
                      ..|.++||.|+.++..-..++|++ .+++++..|..|+||+|.+...|+...+..++.+|     ++..      ..+..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~-----a~~~------a~~~~  721 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLKRG-----ADPN------AFDPD  721 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhcccc-----cccc------ccCcc
Confidence            356789999999999999999995 58899999999999999999999999999999988     7777      78999


Q ss_pred             CCCHHHHHHHcCCHHHHHhhh
Q 041026          127 GNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus       127 g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |.+|+.+|....+.+++-++.
T Consensus       722 ~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  722 GKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             CcchhhHHhhhccccHHHHHh
Confidence            999999998876666655543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.49  E-value=6e-07  Score=57.03  Aligned_cols=65  Identities=14%  Similarity=0.098  Sum_probs=59.8

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhC-CCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSL-PSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYY   72 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~   72 (149)
                      -+|.+|..|.|++++|+..|+.+.+.||+.++ +.  +...+..+.+++.+|-..|..+++..|.+..
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~--vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF--VGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCccc--ccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            47899999999999999999999999999999 55  8888999999999999999999999999763

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.47  E-value=6.6e-07  Score=62.46  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             cHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhh
Q 041026           51 SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        51 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                      .-|..||+.|..+.++.|++ +|+++|.+|....+||.+|+..|+..++++|++.|
T Consensus        38 ~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenG   92 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENG   92 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcC
Confidence            45788888888888888885 78888888888888888888888888888888888

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.43  E-value=3.4e-07  Score=70.37  Aligned_cols=90  Identities=19%  Similarity=0.161  Sum_probs=80.9

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAA   91 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~   91 (149)
                      ..|.|+||.|+..+....+.+|++.+++  .+..+..|++|+|.+...|+......+++ .+++.+..+..|.+|+++|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHh
Confidence            4579999999999999999999999999  99999999999999999999999999995 68999999999999999998


Q ss_pred             HcCCHHHHHHHHH
Q 041026           92 RAGKLNTATVLVD  104 (149)
Q Consensus        92 ~~g~~~~v~~Ll~  104 (149)
                      ...+.+++-++..
T Consensus       731 ~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  731 EAANADIVLLLRL  743 (785)
T ss_pred             hhccccHHHHHhh
Confidence            8866666655543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.33  E-value=1.4e-06  Score=55.44  Aligned_cols=64  Identities=19%  Similarity=0.082  Sum_probs=49.8

Q ss_pred             cceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           74 FFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        74 ~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      .++|.+|..|+||+.+|+..|.-+.+.||+.+|     +     .++..++..+.+++.+|-+.|+.+.+..|.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg-----~-----a~vgv~d~ssldaaqlaek~g~~~fvh~lf   66 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRG-----V-----AFVGVTDESSLDAAQLAEKGGAQAFVHSLF   66 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccC-----c-----ccccccccccchHHHHHHhcChHHHHHHHH
Confidence            357778888888888888888888888888887     2     233377888888888888888888887765

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.14  E-value=3.8e-05  Score=53.97  Aligned_cols=74  Identities=18%  Similarity=0.174  Sum_probs=60.2

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHH
Q 041026           15 KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAAR   92 (149)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~   92 (149)
                      +--|..||+.|+.+.+++|++.|..  +|..|.-.++||.+|+..||..++++|++ .|+....-...|.-. ||++.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn--VN~vD~fD~spL~lAsLcGHe~vvklLLe-nGAiC~rdtf~G~RC-~YgaL  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN--VNAVDRFDSSPLYLASLCGHEDVVKLLLE-NGAICSRDTFDGDRC-HYGAL  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC--cchhhcccccHHHHHHHcCcHHHHHHHHH-cCCcccccccCcchh-hhhhh
Confidence            3457899999999999999998888  99999999999999999999999999996 477555444455544 44444

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.98  E-value=2.4e-05  Score=59.76  Aligned_cols=90  Identities=19%  Similarity=0.165  Sum_probs=73.6

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCccee---------
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFIN---------   77 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~---------   77 (149)
                      +|-.|.-|+++++.|....+.++.+.|++....  .      | .+|-+|+..|..+.++.++.. .....         
T Consensus        55 inc~d~lGr~al~iai~nenle~~eLLl~~~~~--~------g-dALL~aI~~~~v~~VE~ll~~-~~~~~~~~~~~d~~  124 (822)
T KOG3609|consen   55 INCRDPLGRLALHIAIDNENLELQELLLDTSSE--E------G-DALLLAIAVGSVPLVELLLVH-FVDAPYLERSGDAN  124 (822)
T ss_pred             hhccChHhhhceecccccccHHHHHHHhcCccc--c------c-hHHHHHHHHHHHHHHHHHHhc-ccccchhccccccC
Confidence            466788899999999999999999999997654  2      2 488899999999999999953 32221         


Q ss_pred             -cccCCCCcHHHHHHHcCCHHHHHHHHHhh
Q 041026           78 -KTNNQGDTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        78 -~~~~~g~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                       ..-..+-||+.+||..++.||++.|+.+|
T Consensus       125 ~~~ft~ditPliLAAh~NnyEil~~Ll~kg  154 (822)
T KOG3609|consen  125 SPHFTPDITPLMLAAHLNNFEILQCLLTRG  154 (822)
T ss_pred             cccCCCCccHHHHHHHhcchHHHHHHHHcC
Confidence             11234679999999999999999999999

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.92  E-value=9.9e-06  Score=62.94  Aligned_cols=93  Identities=17%  Similarity=0.035  Sum_probs=68.3

Q ss_pred             ccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHH-HhhhcCCCCCCCCccccc
Q 041026           43 WSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV-DFAKHIPSTSQPPVDLLR  121 (149)
Q Consensus        43 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~~~  121 (149)
                      ......|++.+|+++..+..-+++.+++-.+......|..|.-.+|.|+..| .++.-+++ ..+     ..++      
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg-~ewA~ll~~~~~-----~ai~------  635 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALG-YEWAFLPISADG-----VAID------  635 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcC-CceeEEEEeecc-----cccc------
Confidence            3455678889999999888888888885435556667778888888855544 44443333 333     4444      


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026          122 MENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus       122 ~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      ++|..|+||||+|+.+|+..++.-|.
T Consensus       636 i~D~~G~tpL~wAa~~G~e~l~a~l~  661 (975)
T KOG0520|consen  636 IRDRNGWTPLHWAAFRGREKLVASLI  661 (975)
T ss_pred             cccCCCCcccchHhhcCHHHHHHHHH
Confidence            89999999999999999999998775

>smart00248 ANK ankyrin repeats

Probab=97.60  E-value=0.00017  Score=30.88  Aligned_cols=25  Identities=44%  Similarity=0.703  Sum_probs=20.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhh
Q 041026           82 QGDTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        82 ~g~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                      .|.||+|+|+..++.++++.|++.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3678888888888888888888776

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.39  E-value=0.0005  Score=29.27  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=16.8

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCC
Q 041026           14 NKSPLSLAIEMENTDVLEYILRSLPS   39 (149)
Q Consensus        14 g~t~l~~a~~~~~~~~~~~ll~~~~~   39 (149)
                      |.||+|+|+..++.++++.+++.+..
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            56666666666666666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.20  E-value=0.00029  Score=51.27  Aligned_cols=62  Identities=15%  Similarity=0.098  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhCCcceec------ccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHH
Q 041026           62 GEISAKIAQYYPFFINK------TNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL  135 (149)
Q Consensus        62 ~~~~~~Ll~~~~~~~~~------~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  135 (149)
                      ...+++|.+ .+...|.      .+.--.|+||+|+.+|...++.+|++.|     .|+.      .+|..|.||.+++.
T Consensus       404 p~~ie~lke-n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-----~Dp~------~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKE-NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-----CDPS------TKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHh-cCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-----CCch------hcccCCCCcccccc
Confidence            456777764 3444432      2334579999999999999999999999     7777      89999999999886

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.98  E-value=0.0026  Score=46.50  Aligned_cols=65  Identities=20%  Similarity=0.165  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHhCCCCc----cccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHH
Q 041026           26 NTDVLEYILRSLPSGI----SWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAA   91 (149)
Q Consensus        26 ~~~~~~~ll~~~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~   91 (149)
                      -...|.+|.++....+    +...+..-.|+||+|+..|..+++.++|+. ++++..+|..|.||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccc
Confidence            3667888888776621    222345567899999999999999999965 7999999999999998887

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.83  E-value=0.023  Score=31.14  Aligned_cols=44  Identities=14%  Similarity=0.046  Sum_probs=23.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      -+..|+..|+.++++.+++.+               ..   ...++..|+...+.+++++|.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~---------------~~---~~~~l~~AI~~H~n~i~~~l~   52 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN---------------KP---DNDCLEYAIKSHNNEIADWLI   52 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh---------------cc---HHHHHHHHHHHhhHHHHHHHH
Confidence            345555666666666555433               01   134455566655556655553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.70  E-value=0.062  Score=29.45  Aligned_cols=50  Identities=24%  Similarity=0.224  Sum_probs=40.9

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCC
Q 041026           15 KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYP   73 (149)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~   73 (149)
                      ...+..|+..|+.++++.+++....   +      ..++..|+..-+.+++++|++.+.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~---~------~~~l~~AI~~H~n~i~~~l~~~y~   56 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP---D------NDCLEYAIKSHNNEIADWLIENYN   56 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc---H------HHHHHHHHHHhhHHHHHHHHHhcC
Confidence            4567899999999999999976533   1      348999999999999999998753

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.69  E-value=0.27  Score=32.89  Aligned_cols=93  Identities=16%  Similarity=0.118  Sum_probs=61.7

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCCCCcHHHHHHH--hCcHHHHHHHHHhCCcceec---ccCCCCcHH
Q 041026           14 NKSPLSLAIEMENTDVLEYILRSLPSGISWSS-GKSPFSLLDVAAK--YGHGEISAKIAQYYPFFINK---TNNQGDTPL   87 (149)
Q Consensus        14 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~~l~~a~~--~~~~~~~~~Ll~~~~~~~~~---~~~~g~tpl   87 (149)
                      ..+++-++...+.-+++-+|+....-.-.+.. ...+.--+-++..  ..+..+++.+++..-+++|.   +-.+|.|-|
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML  258 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML  258 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence            34556666667777888888876542001111 1111123344433  24567888888765566664   457899999


Q ss_pred             HHHHHcCCHHHHHHHHHhh
Q 041026           88 HCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~  106 (149)
                      .-|..+++.+++.+|+.+|
T Consensus       259 DNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  259 DNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             HhHHhcCcHHHHHHHHHcC
Confidence            9999999999999999999

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.61  E-value=0.31  Score=31.50  Aligned_cols=45  Identities=20%  Similarity=0.064  Sum_probs=34.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |.+|+..|-...+-..+.+|     .+++            .++|..|+..+|..++.++..
T Consensus       147 l~~a~~kgll~F~letlkyg-----g~~~------------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYG-----GNVD------------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcC-----Cccc------------HHHHHHHHHhhHHHHHHHhhc
Confidence            56778888888887777777     3333            389999999999999988753

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.64  E-value=0.85  Score=30.66  Aligned_cols=89  Identities=6%  Similarity=0.006  Sum_probs=57.4

Q ss_pred             cHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc----HHHHHHH--cCCHHHHHHHHHhhhcCCCCCCCCcccccccc
Q 041026           51 SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT----PLHCAAR--AGKLNTATVLVDFAKHIPSTSQPPVDLLRMEN  124 (149)
Q Consensus        51 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t----plh~a~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  124 (149)
                      +++.++...+..+++.+|+++.  ....+|.-...    -+-|+..  .-+..++++++.+|    -++++   -.-.+-
T Consensus       181 ~Am~~si~~~K~dva~~lls~f--~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~G----lv~vN---~~F~~~  251 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKF--NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRG----LVDVN---KKFQKV  251 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhc--ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhcc----ccccc---hhhhcc
Confidence            4677777778888999998653  23333322211    2233322  23456788888888    12222   111245


Q ss_pred             CCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          125 AMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       125 ~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..|.|.|.-|++.++.+++.+|.+
T Consensus       252 NSGdtMLDNA~Ky~~~emi~~Llk  275 (284)
T PF06128_consen  252 NSGDTMLDNAMKYKNSEMIAFLLK  275 (284)
T ss_pred             CCcchHHHhHHhcCcHHHHHHHHH
Confidence            689999999999999999999875

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-04

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWS-SGKSPFSLLDVAAKYGHGEIS 65
           V+  DT   +PL LA  + + +++E +L++     +   SG +P  L   AAK GH EI 
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHL---AAKRGHLEI- 95
Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
            ++   Y   +N  +  G TPLH AA  G L    VL+ +   + +  +
Sbjct: 96  VEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISA 66
           V+ ND    +PL L +   + +++E +L+   + ++ +S KS ++ L +AA  GH EI  
Sbjct: 40  VNANDWFGITPLHLVVNNGHLEIIEVLLK-YAADVN-ASDKSGWTPLHLAAYRGHLEI-V 96
Query: 67  KIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
           ++   Y   +N  + QG TPLH AA  G L    VL+ +   + +  +
Sbjct: 97  EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILR-SLPSGISWSSGKSPFSLLDVAAKYGHGEIS 65
           V+  D + K+PL LA    + +++E +L+       +   G +P  L   AA YGH EI 
Sbjct: 40  VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHL---AALYGHLEI- 95
Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
            ++       +N T+  G TPLH AA AG L    VL+ +   + +  +
Sbjct: 96  VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYIL-RSLPSGISWSSGKSPFSLLDVAAKYGHGEIS 65
           V+ +D+  K+PL LA E  + +V++ +L +        S GK+P  L   AA+ GH E+ 
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHL---AAENGHKEV- 85
Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTS----QPPVDLLR 121
            K+        N  ++ G TPLH AA  G      +L+      P+TS    + P+DL R
Sbjct: 86  VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNTSDSDGRTPLDLAR 144

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS-GKSPFSLLDVAAKYGHGEIS 65
           V+  D    +PL LA +  + +++E +L+      +W + G +P  L   AA  GH EI 
Sbjct: 40  VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHL---AADNGHLEI- 95
Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
            ++   +   +N  + +G TPLH AA  G L    VL+ +   + +  +
Sbjct: 96  VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEIS 65
           V+  D   ++PL LA    + +V++ +L +         +G++P  L   AA+ GH E+ 
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL---AARNGHLEV- 83
Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
            K+       +N  +  G TPLH AAR G L    +L++
Sbjct: 84  VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS-GKSPFSLLDVAAKYGHGEISAKIA 69
           D    +PL LA    + +++E +L++     ++ + G +P  L   AA +GH EI  ++ 
Sbjct: 44  DVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHL---AAHFGHLEI-VEVL 99
Query: 70  QYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ 114
                 +N  ++ G TPLH AA  G L    VL+ +   + +  +
Sbjct: 100 LKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEIS 65
           V+  D    +PL LA    + +++E +L++      S  +G +P  L   AA  GH EI 
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHL---AAATGHLEI- 95
Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
            ++   +   +N  +N G TPLH AA+ G L    VL+
Sbjct: 96  VEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-05
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	6e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
2pnn_A	273	Transient receptor potential cation channel subfa	9e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-05
2rfa_A	232	Transient receptor potential cation channel subfa	5e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 46  GKSPFSLLDVAAKYGHGE-----ISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G +P   L +A + G          +    +    +  TN  G T LH A+  G L    
Sbjct: 78  GNTP---LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 101 VLVD 104
           +LV 
Sbjct: 135 LLVS 138

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKIAQY---YPFFINKTNNQGDTPLHCAARAGKLNTATVL 102
           G S    L +A  +    ++ ++ +       F+N  NN   TPLH A    +   A  L
Sbjct: 8   GDSF---LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 103 V 103
           +
Sbjct: 65  L 65

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 14/64 (21%)

Query: 45  SGKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
           +G++    L +A    + ++   +     A      +N+   QG +P             
Sbjct: 150 NGRTA---LHLAVDLQNPDL-VSLLLKCGAD-----VNRVTYQGYSPYQLTWGRPSTRIQ 200

Query: 100 TVLV 103
             L 
Sbjct: 201 QQLG 204

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 22/111 (19%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS-------GKSPFSLLDVAAKY 59
             L D    +PL LA E      +  + +S  +    S        G +    L +A+ +
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC---LHLASIH 127

Query: 60  GHGEISAKI-----AQYYPFFIN-KTNNQGDTPLHCAARAGKLNTATVLVD 104
           G+  I  ++     A      +N +    G T LH A      +  ++L+ 
Sbjct: 128 GYLGI-VELLVSLGAD-----VNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 20/105 (19%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSG------ISWSSGKSPFSLLDVAAKYGHGEI 64
           D  +++PL  A+E  N + L+ ++ ++PS        +   G S    L  A      ++
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH---LHWAILINWEDV 226

Query: 65  SAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
            A              +N  +N+   PL+ + RA  +     L+ 
Sbjct: 227 -AMRFVEMGID-----VNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 22/110 (20%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYIL----RSLPSGISWSSGKSP-------FSLLDVAAKY 59
           D  +  PL L++      + + +L      L     + +G +           +  AA  
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 60  GHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
              E+  ++      +     + ++ N G        +        + + 
Sbjct: 301 SKQEV-LQLLQEKLDE-----VVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 11/94 (11%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQ 70
           +    + L LA +    D  +Y+  S+    S   G+ P   + +A      ++      
Sbjct: 50  NRFGCTALHLACKFGCVDTAKYLA-SVGEVHSLWHGQKP---IHLAVMANKTDL-VV--- 101

Query: 71  YYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                +     +G  P        +     +   
Sbjct: 102 ---ALVEGAKERGQMPESLLNECDEREVNEIGSH 132

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 14/65 (21%)

Query: 45  SGKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
                   + VAA+ G  +   +                 N  G T LH A + G ++TA
Sbjct: 19  ENMEK---IHVAARKGQTDE-VRRLIETGVS-----PTIQNRFGCTALHLACKFGCVDTA 69

Query: 100 TVLVD 104
             L  
Sbjct: 70  KYLAS 74

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 25/108 (23%)

Query: 6   LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--SSGKSPFSLLDVAAKYG--H 61
           LV       + P SL  E +  +V E        G       G++    L      G  +
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVNEI-------GSHVKHCKGQTA---LHWCVGLGPEY 152

Query: 62  GEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
            E+  KI     A          +   +TPL  A          +++D
Sbjct: 153 LEM-IKILVQLGAS-----PTAKDKADETPLMRAMEFRNREALDLMMD 194

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVLVD 104
             K++++    +H AAR G+ +    L++
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIE 41

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 5   NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYG 60
           N V     +  +PL  A +  N   L   L +    +       +G +    L  A   G
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWLRECLDN---RVGVNGLDKAGSTA---LYWACHGG 117

Query: 61  HGE-----ISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           H +      +    +     +N+ N  GDT LH AA  G  +   +L+ 
Sbjct: 118 HKDIVEMLFTQPNIE-----LNQQNKLGDTALHAAAWKGYADIVQLLLA 161

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 20/103 (19%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEISA 66
           D    + L  A    + D++E +       I        G +    L  AA  G+ +I  
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQ--PNIELNQQNKLGDTA---LHAAAWKGYADI-V 156

Query: 67  KI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           ++     A+      +  N +       A  A   +       
Sbjct: 157 QLLLAKGAR-----TDLRNIEKKLAFDMATNAACASLLKKKQG 194

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 18/104 (17%)

Query: 17  PLSLAIEMENTDVLEYILRSLPSG-----------------ISWSSGKSPFSLLDVAAKY 59
           PLSLA   +  DV+ Y+L +                     +  +      S L +    
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198

Query: 60  GHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
           G  ++ A++          +N+QG TPL  AA+ GK+     ++
Sbjct: 199 GLLQMGARLCPT-VQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 20/91 (21%)

Query: 53  LDVAAKYGHGE-----------ISAK-IAQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           L +A +    +           +  +   +++          G+ PL  AA   + +  T
Sbjct: 94  LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

Query: 101 VLVDFAKHIPSTSQPPVDLLRMENAMGNTVL 131
            L++           P   L   +++GNTVL
Sbjct: 154 YLLENPHQ-------PAS-LEATDSLGNTVL 176

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 19/109 (17%)

Query: 5   NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGI----SWSSGKSPFSLLDVAAKYG 60
           NL    D +  +P  +A  + N +V++ +    P         + G +    L +A    
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTC---LHLAVGKK 118

Query: 61  HGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
             E+ ++      A      +   +     PLH AA  G L    +L  
Sbjct: 119 WFEV-SQFLIENGAS-----VRIKDKFNQIPLHRAASVGSLKLIELLCG 161

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.3 bits (111), Expect = 4e-07
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRS----LPSGISWSSGKSPFSLLDVAAKYGHG 62
           +   D   + PL  ++  +  ++  ++L              SG +P     +A   G+ 
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP---FHIACSVGNL 85

Query: 63  EISAK--IAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           E+  K    +     +NK  NQG T LH A        +  L++
Sbjct: 86  EV-VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 13/64 (20%)

Query: 46  GKSPFSLLDVAAKYGHGE-----ISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
            + P   L  AA  G  +          +      +N  + QG TPL  A   G  + A 
Sbjct: 140 NQIP---LHRAASVGSLKLIELLCGLGKSA-----VNWQDKQGWTPLFHALAEGHGDAAV 191

Query: 101 VLVD 104
           +LV+
Sbjct: 192 LLVE 195

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--SSGKSPFSLLDVAAKYGHGE----- 63
           D  N+ PL  A  + +  ++E +     S ++W    G +P   L  A   GHG+     
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP---LFHALAEGHGDAAVLL 193

Query: 64  ISAKIAQYYPFFINKTNNQGDTPLHCAAR 92
           +    A+      +  +N+G      A  
Sbjct: 194 VEKYGAE-----YDLVDNKGAKAEDVALN 217

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--------SSGKSPFSLLDVAAK 58
                    +PL +A +     V E +       +           +G +P   L VA  
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELL-------LERDAHPNAAGKNGLTP---LHVAVH 188

Query: 59  YGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           + + +I  K+             +     G TPLH AA+  ++  A  L+ 
Sbjct: 189 HNNLDI-VKLLLPRGGS-----PHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 21/103 (20%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSG----ISWSSGKSPFSLLDVAAKYGHGEISA 66
                +PL LA +  + +++  +L          +   SG +P   L + A+ GH  + A
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSK---QANGNLGNKSGLTP---LHLVAQEGHVPV-A 294

Query: 67  KI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
            +            ++ T   G TPLH A+  G +     L+ 
Sbjct: 295 DVLIKHGVM-----VDATTRMGYTPLHVASHYGNIKLVKFLLQ 332

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 21/103 (20%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEISA 66
             +  +PL +A  M +  +++ +L+    G S        ++P   L +AA+ GH E+ A
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQR---GASPNVSNVKVETP---LHMAARAGHTEV-A 63

Query: 67  KI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           K      A+     +N       TPLHCAAR G  N   +L++
Sbjct: 64  KYLLQNKAK-----VNAKAKDDQTPLHCAARIGHTNMVKLLLE 101

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.9 bits (110), Expect = 9e-07
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 21/107 (19%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHG 62
            H       +PL +A +    +V   +L+    G S       G +P   L +AA+ GH 
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQY---GGSANAESVQGVTP---LHLAAQEGHA 258

Query: 63  EISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           E+   +     A       N  N  G TPLH  A+ G +  A VL+ 
Sbjct: 259 EM-VALLLSKQAN-----GNLGNKSGLTPLHLVAQEGHVPVADVLIK 299

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 21/103 (20%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEISA 66
           +   ++PL +A    +T+V +Y+L++              ++P   L  AA+ GH  +  
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQN---KAKVNAKAKDDQTP---LHCAARIGHTNM-V 96

Query: 67  KI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           K+     A       N     G TPLH AAR G + T   L++
Sbjct: 97  KLLLENNAN-----PNLATTAGHTPLHIAAREGHVETVLALLE 134

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 21/111 (18%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSG----ISWSSGKSPFSLLDVAAKYGHG 62
           V        +PL +A    N  +++++L+              G SP   L  AA+ GH 
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYSP---LHQAAQQGHT 357

Query: 63  EISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKH 108
           +I   +     A       N+ ++ G TPL  A R G ++   VL      
Sbjct: 358 DI-VTLLLKNGAS-----PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 17/107 (15%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGE--- 63
           + + +S L  A    +  ++ Y+L S            +G +    L + A     +   
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA---LMIVAHNEGRDQVA 252

Query: 64  -----IS--AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
                +   AK+        +    +G T LH AA+   +     LV
Sbjct: 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 299

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 13/65 (20%)

Query: 45  SGKSPFSLLDVAAKYGHGE-----ISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
            G++    L  AA+  +       +  K +       +K +  G TP+  AA+ G++   
Sbjct: 278 KGRTA---LHYAAQVSNMPIVKYLVGEKGSN-----KDKQDEDGKTPIMLAAQEGRIEVV 329

Query: 100 TVLVD 104
             L+ 
Sbjct: 330 MYLIQ 334

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 23/105 (21%)

Query: 14  NKSPLSLAIEMENTDVLEY-ILRSLPSGISW--------SSGKSPFSLLDVAAKYGHGEI 64
           N++ L       + +  E  I+      I+             +P   L +A       +
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP---LMLAVLARRRRL 181

Query: 65  SAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                    A          N    + LH AA          +++
Sbjct: 182 -VAYLMKAGAD-----PTIYNKSERSALHQAAANRDFGMMVYMLN 220

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 16/96 (16%)

Query: 15  KSPLSLAIEMENTDVLEYILRSLPSGISWSS--GKSPFSLLDVAAKYGHGEISAKI---- 68
           ++ L  A ++ N  +++Y++    S        GK+P   + +AA+ G  E+        
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP---IMLAAQEGRIEV-VMYLIQQ 335

Query: 69  -AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
            A      +   +    T    A      N   +  
Sbjct: 336 GAS-----VEAVDATDHTARQLAQANNHHNIVDIFD 366

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 26/110 (23%)

Query: 9   LNDTTN--KSPLSLAIEMENTDVLEYILRSLPSGISWSS-------GKSPFSLLDVAAKY 59
               T    + L LA+  ++   L+++L                  G++    L +AA  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGF---SAGHEYLDLQNDLGQTA---LHLAAIL 55

Query: 60  GHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           G      +      A      +      G T LH A R      A VL+ 
Sbjct: 56  GEAST-VEKLYAAGAG-----VLVAERGGHTALHLACRVRAHTCACVLLQ 99

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 18/106 (16%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGI---SWSSGKSPFSLLDVAAKYGHGE 63
           +   +    +PL +A+  ++ +++   LR   + +     + G++P   L +A +     
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRL-LRDAGADLNKPEPTCGRTP---LHLAVEAQAAS 206

Query: 64  ISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +  ++     A             G TPL  A        A +L  
Sbjct: 207 V-LELLLKAGAD-----PTARMYGGRTPLGSALLRPNPILARLLRA 246

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 29/98 (29%)

Query: 15  KSPLSLAIEMENTDVLEYILRSLPSGISW--------SSGKSPFSLLDVAAKYGHGEISA 66
           ++PL LA+E +   VLE +       +            G++P   L  A    +  + A
Sbjct: 193 RTPLHLAVEAQAASVLELL-------LKAGADPTARMYGGRTP---LGSALLRPNPIL-A 241

Query: 67  KI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
           ++     A        +      +P   +      +  
Sbjct: 242 RLLRAHGAP-----EPEDGGDKLSPCSSSGSDSDSDNR 274

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L +AA +GH +I  +      A      IN  N  G+ PLH A   G+   A  LV 
Sbjct: 76  LHLAASHGHRDI-VQKLLQYKAD-----INAVNEHGNVPLHYACFWGQDQVAEDLVA 126

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G SP   L  A + G   +  ++     A+     IN  N   DTPLH AA  G  +   
Sbjct: 39  GFSP---LHWACREGRSAV-VEMLIMRGAR-----INVMNRGDDTPLHLAASHGHRDIVQ 89

Query: 101 VLVD 104
            L+ 
Sbjct: 90  KLLQ 93

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 55  VAAKYGHGEISAKIAQYY----PFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
              + G+        + +       +N+ ++ G +PLH A R G+     +L+ 
Sbjct: 11  TQCREGNAVA----VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G  P   L  A  +G  ++ A+      A      ++  N  G+ P+  A    +     
Sbjct: 105 GNVP---LHYACFWGQDQV-AEDLVANGAL-----VSICNKYGEMPVDKAKAPLRELLRE 155

Query: 101 VLVD 104
               
Sbjct: 156 RAEK 159

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.1 bits (108), Expect = 5e-07
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  A  +GH ++  ++     A      +N T  Q D+PLH AA+ G ++   +L+ 
Sbjct: 47  LHEACNHGHLKV-VELLLQHKAL-----VNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L +A+  G      +      +       N  ++ G TPLH A   G L    +L+ 
Sbjct: 14  LHIASIKGDIPS-VEYLLQNGSD-----PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 11/55 (20%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVL 102
           L  AAK GH +I  K+     A       N  N  G  P+         +   + 
Sbjct: 80  LHDAAKNGHVDI-VKLLLSYGAS-----RNAVNIFGLRPVDYTDDESMKSLLLLP 128

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKI-- 68
           D    S    AI   N  ++  +L +  +  +    + P   L  AA     +I  KI  
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLL-NAGALKNLLENEFP---LHQAATLEDTKI-VKILL 82

Query: 69  ---AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                      ++ +++G+T L+ A  +G + T  + V 
Sbjct: 83  FSGLD-----DSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 15/96 (15%)

Query: 15  KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKI-----A 69
           K+    A+ + +  ++ Y L  +PS    +   S    + +  K GH ++   +      
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC---IHITIKNGHVDM-MILLLDYMT 185

Query: 70  QYYPFFINKTNNQGDTP-LHCAARAGKLNTATVLVD 104
                  N  N+    P +  A     +     L  
Sbjct: 186 S-----TNTNNSLLFIPDIKLAIDNKDIEMLQALFK 216

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 22/105 (20%)

Query: 10  NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS----GKSPFSLLDVAAKYGHGEIS 65
           N   N+ PL  A  +E+T +++ +L S   G+  S     G +    L  A   G+ +  
Sbjct: 58  NLLENEFPLHQAATLEDTKIVKILLFS---GLDDSQFDDKGNTA---LYYAVDSGNMQT- 110

Query: 66  AKI-----AQYYPFFINKTNNQG-DTPLHCAARAGKLNTATVLVD 104
            K+      +     +      G  T  + A     ++  +  + 
Sbjct: 111 VKLFVKKNWR-----LMFYGKTGWKTSFYHAVMLNDVSIVSYFLS 150

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVLVD 104
             K +  G +  + A     +     L++
Sbjct: 24  TFKADVHGHSASYYAIADNNVRLVCTLLN 52

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 7e-07
 Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 24/115 (20%)

Query: 2   KVLNLVHLNDTTNKS---PLSLAIEMENTDVLEYILRSLPSG----ISWSSGKSPFSLLD 54
            +  L +       S   P+  A    +   L  ++     G    I  +   SP   L 
Sbjct: 44  GIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ---GWAVNIITADHVSP---LH 97

Query: 55  VAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
            A   GH     KI     AQ     +N       TPL  A  +G  +   +L+ 
Sbjct: 98  EACLGGHLSC-VKILLKHGAQ-----VNGVTADWHTPLFNACVSGSWDCVNLLLQ 146

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 30/108 (27%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--------SSGKSPFSLLDVAAKYGHG 62
           ++   SP+  A    + + +  +       I++        S   +P   L +A +    
Sbjct: 154 ESDLASPIHEAARRGHVECVNSL-------IAYGGNIDHKISHLGTP---LYLACENQQR 203

Query: 63  EISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF 105
               K      A      +N+     D+PLH   R      A +L+DF
Sbjct: 204 AC-VKKLLESGAD-----VNQGKG-QDSPLHAVVRTASEELACLLMDF 244

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 14/85 (16%)

Query: 17  PLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKI-----AQY 71
           PL LA E +    ++ +L S   G   + GK   S L    +    E+ A +     A  
Sbjct: 193 PLYLACENQQRACVKKLLES---GADVNQGKGQDSPLHAVVRTASEEL-ACLLMDFGAD- 247

Query: 72  YPFFINKTNNQGDTPLHCAARAGKL 96
                   N +G  P+        L
Sbjct: 248 ----TQAKNAEGKRPVELVPPESPL 268

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.3 bits (106), Expect = 8e-07
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 14/65 (21%)

Query: 45  SGKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
           +G++P   L +AA+ GH E+  K+     A      +N  +  G TPLH AAR G L   
Sbjct: 1   NGRTP---LHLAARNGHLEV-VKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVV 51

Query: 100 TVLVD 104
            +L++
Sbjct: 52  KLLLE 56

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L +AA+ GH E+  K+     A      +N  +  G TPLH AAR G L    +L++
Sbjct: 39  LHLAARNGHLEV-VKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G++P   L +AA+ GH E+  K+     A      +N  +  G TPLH AAR G L    
Sbjct: 68  GRTP---LHLAARNGHLEV-VKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVK 118

Query: 101 VLVD 104
           +L++
Sbjct: 119 LLLE 122

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 19/113 (16%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGIS---------WSSGKSPFSLLDVAAKYGH 61
              ++  +  A+   N   LE +L  L                +GK+      +    G 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 62  GEI------SAKIAQYYPFFIN----KTNNQGDTPLHCAARAGKLNTATVLVD 104
            +        A+       F+N     +  +G T LH A     +   T+LV+
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 22/107 (20%)

Query: 17  PLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEISA---KIA 69
           PLSLA       +++++L++           S G +    L    +     +       +
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV---LHALVEVADNTVDNTKFVTS 207

Query: 70  QYYP------------FFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
            Y                   TN +G TPL  AA +GK+     ++ 
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.1 bits (108), Expect = 9e-07
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 5   NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSG----ISWSSGKSPFSLLDVAAKYG 60
           NLV+  D    +PL  A      + + ++L     G    I     +S    L +A+  G
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEW---GADPHILAKERESA---LSLASTGG 80

Query: 61  HGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           + +I   +            IN  +  G TPL  A R   +     L+ 
Sbjct: 81  YTDI-VGLLLERDVD-----INIYDWNGGTPLLYAVRGNHVKCVEALLA 123

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +   A  G  +   K             +NK + +G TPL  A+  G++ T   L++
Sbjct: 6   IHQLAAQGELDQ-LKEHLRKGDNL----VNKPDERGFTPLIWASAFGEIETVRFLLE 57

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  A +  H +   +      A      +    + G TP+  A   G      V+ +
Sbjct: 106 LLYAVRGNHVKC-VEALLARGAD-----LTTEADSGYTPMDLAVALGYRKVQQVIEN 156

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.7 bits (102), Expect = 2e-06
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 14/65 (21%)

Query: 45  SGKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
           +G++P   L +AA+ GH E+  K+     A      +N  +  G TPLH AAR G L   
Sbjct: 1   NGRTP---LHLAARNGHLEV-VKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVV 51

Query: 100 TVLVD 104
            +L++
Sbjct: 52  KLLLE 56

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.3 bits (101), Expect = 3e-06
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L +AA+ GH E+  K+     A      +N  +  G TPLH AAR G L    +L++
Sbjct: 39  LHLAARNGHLEV-VKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 21/107 (19%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHG 62
            H +D    +PL LA       +++ +L     G         G  P   L  A  YGH 
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLL---QHGADVHAKDKGGLVP---LHNACSYGHY 104

Query: 63  EISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           E+  ++     A      +N  +    TPLH AA   ++   ++L+ 
Sbjct: 105 EV-TELLLKHGAC-----VNAMDLWQFTPLHEAASKNRVEVCSLLLS 145

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.6 bits (104), Expect = 6e-06
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
             +P   L VAA+  H ++  ++     A+     +N  ++ G T LH AA AG L T  
Sbjct: 247 FMTP---LHVAAERAHNDV-MEVLHKHGAK-----MNALDSLGQTALHRAALAGHLQTCR 297

Query: 101 VLVD 104
           +L+ 
Sbjct: 298 LLLS 301

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 21/107 (19%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHG 62
           VH  D     PL  A    + +V E +L+    G           +P   L  AA     
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKH---GACVNAMDLWQFTP---LHEAASKNRV 137

Query: 63  EISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           E+   +     A          N  G + +  A         T    
Sbjct: 138 EV-CSLLLSHGAD-----PTLVNCHGKSAVDMAPTPELRERLTYEFK 178

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 14  NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYP 73
             S L  A E +   V + +   + +     S ++    L  A    H +   ++A+   
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA---LHCAVASLHPK-RKQVAEL-- 232

Query: 74  FFI------NKTNNQGDTPLHCAARAGKLNTATVLVD 104
             +      N+ N    TPLH AA     +   VL  
Sbjct: 233 -LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK 268

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G +P   L +AAK GH EI  K+     A      +N  +  G+TP H A + G      
Sbjct: 42  GNTP---LHLAAKNGHAEI-VKLLLAKGAD-----VNARSKDGNTPEHLAKKNGHHEIVK 92

Query: 101 VLVD 104
           +L  
Sbjct: 93  LLDA 96

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AAK GH E   K      A      +N  +  G+TPLH AA+ G      +L+ 
Sbjct: 13  LHNAAKNGHAEE-VKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 14/99 (14%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKI-- 68
           + T +  L               +     G+       P +LL  ++  G  ++  +   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAH---GMRVKFNPLPLALLLDSSLEGEFDL-VQRII 57

Query: 69  ---AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                      +  N++G T LH A  AG       LV 
Sbjct: 58  YEVDD-----PSLPNDEGITALHNAVCAGHTEIVKFLVQ 91

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G +    L  A   GH EI  K             +N  ++ G TPLHCAA    +    
Sbjct: 70  GITA---LHNAVCAGHTEI-VKFLVQFGVN-----VNAADSDGWTPLHCAASCNNVQVCK 120

Query: 101 VLVD 104
            LV+
Sbjct: 121 FLVE 124

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AA+ G  +   +I     A      +   +  G TPLH AAR G L    +L++
Sbjct: 28  LLEAARAGQDDE-VRILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.7 bits (91), Expect = 7e-05
 Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 10/52 (19%)

Query: 56  AAKYGHGEISAKIAQYYPFFINK---TNNQGDTPLHCAARAGKLNTATVLVD 104
            + + H    +         + +     +     L  AARAG+ +   +L+ 
Sbjct: 1   GSSHHHHHH-SS------GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMA 45

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKIAQYYPFF---INKTNNQGDTPLHCAARAGKLNTATVL 102
           G +P   L +A   G+     ++   +      ++  NN   TPLH A      +   +L
Sbjct: 9   GDTP---LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 103 VD 104
           V 
Sbjct: 66  VT 67

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.6 bits (104), Expect = 5e-06
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 21/105 (20%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS----GKSPFSLLDVAAKYGHGEISA 66
           +   ++PL LA+      V+  ++ +   G S  +    G++      +A ++       
Sbjct: 43  NNLRQTPLHLAVITTLPSVVRLLVTA---GASPMALDRHGQTA---AHLACEHRSPTC-- 94

Query: 67  KIAQY-------YPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
              +            +   N  G T LH A       T  +L++
Sbjct: 95  --LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 30/108 (27%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGIS---------WSSGKSPFSLLDVAAKYGH 61
           +    + L +A+  E  + ++ +       +            SG+SP   L  A +   
Sbjct: 113 NYDGLTALHVAVNTECQETVQLL-------LERGADIDAVDIKSGRSP---LIHAVENNS 162

Query: 62  GEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
             +  ++     A      +N     G + LH A+  G L     LV 
Sbjct: 163 LSM-VQLLLQHGAN-----VNAQMYSGSSALHSASGRGLLPLVRTLVR 204

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 33/105 (31%)

Query: 15  KSPLSLAIEMENTDVLEYILRSLPSGISWS----------SGKSPFSLLDVAAKYGHGEI 64
           +SPL  A+E  +  +++ +L                    SG S    L  A+  G   +
Sbjct: 151 RSPLIHAVENNSLSMVQLLL---------QHGANVNAQMYSGSSA---LHSASGRGLLPL 198

Query: 65  SAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
             +      A       +  N   DTPL  A     ++       
Sbjct: 199 -VRTLVRSGAD-----SSLKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 37.4 bits (88), Expect = 7e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVLVDF 105
             + +  GDTPLH A   G L     LV+ 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNL 31

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 27/142 (19%)

Query: 10  NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSG-------KSPFSLLDVAAKYGHG 62
              +N    +LA   +  ++ E IL         +         +   + L  A   GH 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERIL---------ADKSLATRTDQDSRTALHWACSAGHT 53

Query: 63  EISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPV 117
           EI  +             +N  ++ G +PLH AA AG       L+    H+ + +Q   
Sbjct: 54  EI-VEFLLQLGVP-----VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC 107

Query: 118 DLLRMENAMGNTVLREALFMLG 139
             L    +     +   L   G
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGG 129

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYIL-RSLPSGISWSSGKSPFSLLDVAAKYGHGEIS 65
           V+  +    +PL  A      ++   +L              +    +  AA  G+ ++ 
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA---MHRAAAKGNLKM- 154

Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI 109
             I  +Y    N  + +G+TPLH A    ++  A  LV     I
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.5 bits (104), Expect = 3e-06
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L +A   G+ +I  K+            +N+ +  G TPL  A     +    +L++
Sbjct: 73  LSLACSKGYTDI-VKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +   A  G                    IN T+ +G TPL  AA  G++     L+ 
Sbjct: 7   VHQLAAQGEMLY-LATRIEQENV-----INHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.8 bits (97), Expect = 3e-05
 Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  A    H +   K+     A           + G   +  A   G  +   V+  
Sbjct: 106 LLYAVHGNHVKC-VKMLLESGAD-----PTIETDSGYNSMDLAVALGYRSVQQVIES 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 16/111 (14%), Positives = 28/111 (25%), Gaps = 24/111 (21%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYIL-----------RSLPSGISWSSGKSPFSLLDVAAKY 59
           D    +    A        L+++                       G +    L  AA+ 
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA---LMDAAEK 158

Query: 60  GHGE-----ISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF 105
           GH E     +    A      +N  +N G   L  A  +   +    +   
Sbjct: 159 GHVEVLKILLDEMGAD-----VNACDNMGRNALIHALLSSDDSDVEAITHL 204

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 24/107 (22%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--------SSGKSPFSLLDVAAKYGHG 62
           D   ++ L  A+   +   +E I   L   +            GK+P   L +A +  H 
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLL---LDHGADVNVRGERGKTP---LILAVEKKHL 232

Query: 63  E-----ISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                 +  +  +     IN T++ G T L  A        A +L  
Sbjct: 233 GLVQRLLEQEHIE-----INDTDSDGKTALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G +P     +AA  G  ++  K+     A      +N+ +  G T    AA  GK+    
Sbjct: 72  GATP---FLLAAIAGSVKL-LKLFLSKGAD-----VNECDFYGFTAFMEAAVYGKVKALK 122

Query: 101 VLVD 104
            L  
Sbjct: 123 FLYK 126

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 3e-06
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 29/107 (27%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--------SSGKSPFSLLDVAAKYGHG 62
           D    +P+  A E ++ D+++ +       +S         +        L  AA  G  
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLL-------LSKGSDINIRDNEENIC---LHWAAFSGCV 157

Query: 63  EISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +I A+I            ++  N  GD+PLH AAR  + +   + + 
Sbjct: 158 DI-AEILLAAKCD-----LHAVNIHGDSPLHIAARENRYDCVVLFLS 198

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
            +SP   L  AA+ GH +I   +     A      I+  +    TPL  AA    L    
Sbjct: 11  KRSP---LHAAAEAGHVDI-CHMLVQAGAN-----IDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 101 VLVD 104
            L+ 
Sbjct: 62  YLIK 65

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 14/63 (22%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G SP   L +AA+    +    +     +      +   N +G+TPL CA+   ++ +A 
Sbjct: 177 GDSP---LHIAARENRYDC-VVLFLSRDSD-----VTLKNKEGETPLQCASLNSQVWSAL 227

Query: 101 VLV 103
            + 
Sbjct: 228 QMS 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 53  LDVAAKYGHGEISAKIAQYY----PFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L +AAK GH E+     QY        +N  ++ G TP+  A     ++   +L+ 
Sbjct: 81  LHLAAKKGHYEV----VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AA+  H E   K      A      ++  + +G T LH AA+ G       L+ 
Sbjct: 48  LMEAAENNHLEA-VKYLIKAGAL-----VDPKDAEGSTCLHLAAKKGHYEVVQYLLS 98

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVLVD 104
               +    +PLH AA AG ++   +LV 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQ 32

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
              A K G  +   K             +N+T   G  PLH AA  G+L     L+ 
Sbjct: 11  FMWALKNGDLDE-VKDYVAKGED-----VNRTLEGGRKPLHYAADCGQLEILEFLLL 61

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 41.2 bits (98), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AA  G  EI  +      A      IN  +    TPL  A   G ++   +L+ 
Sbjct: 44  LHYAADCGQLEI-LEFLLLKGAD-----INAPDKHHITPLLSAVYEGHVSCVKLLLS 94

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 28/113 (24%)

Query: 5   NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--------SSGKSPFSLLDVA 56
           +L +  D T ++ L LA     +D  + +       +          + G++P   L  A
Sbjct: 16  SLHNQTDRTGETALHLAARYSRSDAAKRL-------LEASADANIQDNMGRTP---LHAA 65

Query: 57  AKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                  +  +I     A      ++   + G TPL  AAR         L++
Sbjct: 66  VSADAQGV-FQILIRNRATD----LDARMHDGTTPLILAARLAVEGMLEDLIN 113

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           GKS    L  AA   + +  A +     A       +  NN+ +TPL  AAR G   TA 
Sbjct: 125 GKSA---LHWAAAVNNVDA-AVVLLKNGAN-----KDMQNNREETPLFLAAREGSYETAK 175

Query: 101 VLVD 104
           VL+D
Sbjct: 176 VLLD 179

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 21/107 (19%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHG 62
           V+  D   KS L  A  + N D    +L++   G +     +  ++P   L +AA+ G  
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETP---LFLAAREGSY 171

Query: 63  EISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           E  AK+     A       + T++    P   A      +   +L +
Sbjct: 172 ET-AKVLLDHFAN-----RDITDHMDRLPRDIAQERMHHDIVRLLDE 212

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.8 bits (102), Expect = 4e-06
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +  AA+ G  +    +     A+     ++  +  G  P+  A   G  + A  L  
Sbjct: 82  VHDAAREGFLDT-LVVLHRAGAR-----LDVRDAWGRLPVDLAEELGHRDVARYLRA 132

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.8 bits (94), Expect = 7e-05
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 12/57 (21%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AA  G  E   +      A       N  N+ G  P+      G    A +L+ 
Sbjct: 16  LATAAARGRVEE-VRALLEAGAN-----PNAPNSYGRRPIQVMMM-GSARVAELLLL 65

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 45  SGKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
            G++    L +AA Y + E  A +      +     +     +G T LH A     +N  
Sbjct: 36  MGETA---LHIAALYDNLEA-AMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91

Query: 100 TVLVD 104
             L+ 
Sbjct: 92  RALLA 96

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
            +SP   L +AAK    +  +K+ ++    +++    G+T LH AA    L  A VL++
Sbjct: 3   WESP---LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 28/114 (24%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYIL--------------RSLPSGISWSSGKSPFSLLDVA 56
               ++ L +A+  +N +++  +L                         G+ P   L  A
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP---LSFA 128

Query: 57  AKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF 105
           A  G  EI  ++     A      I   ++ G+T LH          A  + + 
Sbjct: 129 ACVGSEEI-VRLLIEHGAD-----IRAQDSLGNTVLHILILQPNKTFACQMYNL 176

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 19/103 (18%)

Query: 15  KSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEISAKIAQ 70
           + PLS A  + + +++  ++     G       S G +    L +     +   + ++  
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEH---GADIRAQDSLGNTV---LHILILQPNKTFACQMYN 175

Query: 71  Y---------YPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                             NNQG TP   A   G +     L+ 
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 21/103 (20%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEISA 66
           D    SPL LA +  +    E +LR+   G+S        ++P   L +AA  GH  I  
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRA---GVSRDARTKVDRTP---LHMAASEGHANI-V 83

Query: 67  KI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           ++     A      +N  +    T LH A          +L+ 
Sbjct: 84  EVLLKHGAD-----VNAKDMLKMTALHWATEHNHQEVVELLIK 121

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 12/54 (22%)

Query: 56  AAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           AA+ G  +   +I     A             G +PLH AA+ G  +T  VL+ 
Sbjct: 9   AARAGQDDE-VRILMANGAP-----FTTDWL-GTSPLHLAAQYGHFSTTEVLLR 55

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 14/62 (22%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
             +    L  A ++ H E+  ++     A      ++  +    T    +   G  + A 
Sbjct: 100 KMTA---LHWATEHNHQEV-VELLIKYGAD-----VHTQSKFCKTAFDISIDNGNEDLAE 150

Query: 101 VL 102
           +L
Sbjct: 151 IL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.4 bits (101), Expect = 6e-06
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATV 101
           G  P   + +A + GH  +        +      +++ + +G TPL  A + G  +   +
Sbjct: 101 GALP---IHLAVQEGHTAV-VSFLAAESD-----LHRRDARGLTPLELALQRGAQDLVDI 151

Query: 102 LVD 104
           L  
Sbjct: 152 LQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.4 bits (101), Expect = 7e-06
 Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 17/95 (17%)

Query: 17  PLSLAIEMENTDVLEYILRSLPSGISW--SSGKSPFSLLDVAAKYGHGEISAKI-----A 69
            LS A    +   +  +L             GK+    L V   +G   I A       A
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA---LQVMM-FGSTAI-ALELLKQGA 59

Query: 70  QYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                  N  +  G +P+H AAR G L+T  VLV+
Sbjct: 60  S-----PNVQDTSGTSPVHDAARTGFLDTLKVLVE 89

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.0 bits (100), Expect = 8e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 14/63 (22%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G SP   +  AA+ G  +   K+     A      +N  +  G  P+H A + G     +
Sbjct: 68  GTSP---VHDAARTGFLDT-LKVLVEHGAD-----VNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 101 VLV 103
            L 
Sbjct: 119 FLA 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.0 bits (100), Expect = 6e-06
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +  AA+ G  +    +     A+     ++  +  G  P+  A   G  + A  L  
Sbjct: 82  VHDAAREGFLDT-LVVLHRAGAR-----LDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.7 bits (94), Expect = 4e-05
 Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 12/57 (21%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AA  G  E   +      A       N  N  G  P+      G    A +L+ 
Sbjct: 16  LATAAARGQVET-VRQLLEAGAD-----PNALNRFGRRPIQVMMM-GSAQVAELLLL 65

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVLVD 104
           I+      D  L  AA  G++ T   L++
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLE 33

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 45  SGKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
           SG +    L VAA  G+ E+  K+            +N  +  G TPLH AA  GK    
Sbjct: 198 SGGTA---LHVAAAKGYTEV-LKLLIQARYD-----VNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 100 TVLVD 104
            +LV+
Sbjct: 249 RILVE 253

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  A    + ++  K      A      IN+ +N+G  PLH AA  G L+ A  L+ 
Sbjct: 77  LHQACIDDNVDM-VKFLVENGAN-----INQPDNEGWIPLHAAASCGYLDIAEYLIS 127

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 9/90 (10%)

Query: 15  KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPF 74
            +PL +A E    ++L+  +           G    +      +    +   +       
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNR--------QGVDIEAARKEEERIMLRDA-RQWLNSGHI 190

Query: 75  FINKTNNQGDTPLHCAARAGKLNTATVLVD 104
              +    G T LH AA  G      +L+ 
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AA  G+ +I A+      A      +   N++GDTPL  A            V+
Sbjct: 110 LHAAASCGYLDI-AEYLISQGAH-----VGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 14/103 (13%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISA 66
           + + D   K    L   + +   LE  +                ++   A   G  E   
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVK---RKKTKVKFDDGAVFLAACSSGDTEE-V 56

Query: 67  KI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                  A      IN  N  G T LH A     ++    LV+
Sbjct: 57  LRLLERGAD-----INYANVDGLTALHQACIDDNVDMVKFLVE 94

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.3 bits (101), Expect = 9e-06
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L +AA +GH EI  ++     A      +N  + +G TPLH AA  G L    VL+ 
Sbjct: 84  LRLAALFGHLEI-VEVLLKNGAD-----VNANDMEGHTPLHLAAMFGHLEIVEVLLK 134

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 9e-06
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G +P   L +AA  GH EI  ++     A      +N  ++ G TPL  AA  G L    
Sbjct: 47  GWTP---LHLAAFNGHLEI-VEVLLKNGAD-----VNAVDHAGMTPLRLAALFGHLEIVE 97

Query: 101 VLVD 104
           VL+ 
Sbjct: 98  VLLK 101

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AA+ G  +   +I     A      +N  +  G TPLH AA  G L    VL+ 
Sbjct: 18  LLEAARAGRDDE-VRILMANGAD-----VNAEDASGWTPLHLAAFNGHLEIVEVLLK 68

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.4 bits (96), Expect = 4e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
           L +AA +GH EI  ++     A      +N  +  G T    +   G  + A +L 
Sbjct: 117 LHLAAMFGHLEI-VEVLLKNGAD-----VNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.0 bits (100), Expect = 9e-06
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 14/63 (22%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G  P   L  A  YGH E+ A++     A      +N  +    TPLH AA  GK     
Sbjct: 75  GLVP---LHNACSYGHYEV-AELLVKHGAV-----VNVADLWKFTPLHEAAAKGKYEICK 125

Query: 101 VLV 103
           +L+
Sbjct: 126 LLL 128

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AA Y    +  +      A      ++  +  G  PLH A   G    A +LV 
Sbjct: 46  LHFAAGYNRVSV-VEYLLQHGAD-----VHAKDKGGLVPLHNACSYGHYEVAELLVK 96

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 53  LDVAAKYGHGE-----ISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
           L  AAK G  E      + +              +  TPLH AA   +++    L+
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVN-----CRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  A    +  I         A      +N  ++ G TPLHCAA          LV 
Sbjct: 58  LHNAICGANYSI-VDFLITAGAN-----VNSPDSHGWTPLHCAASCNDTVICMALVQ 108

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 11/64 (17%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
             +P  LL  AA  G  E+  +              ++ N +G T LH A      +   
Sbjct: 18  RLNPLVLLLDAALTGELEV-VQQAVKEMND-----PSQPNEEGITALHNAICGANYSIVD 71

Query: 101 VLVD 104
            L+ 
Sbjct: 72  FLIT 75

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.6 bits (99), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G +    +  AA+ G  +   +      A      +N  +N+G+ PLH AA+ G L    
Sbjct: 70  GFAV---IHDAARAGFLDT-LQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 101 VLVD 104
            LV 
Sbjct: 121 FLVK 124

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 11/54 (20%)

Query: 56  AAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
             K G+ EI A+      A       +  +  G   +H AARAG L+T   L++
Sbjct: 44  VMKLGNPEI-ARRLLLRGAN-----PDLKDRTGFAVIHDAARAGFLDTLQTLLE 91

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.4 bits (96), Expect = 4e-05
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 13/64 (20%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G  P   L +AAK GH  +  +      A      +   N++GDT    A   G+    +
Sbjct: 103 GNLP---LHLAAKEGHLRV-VEFLVKHTASN----VGHRNHKGDTACDLARLYGRNEVVS 154

Query: 101 VLVD 104
           ++  
Sbjct: 155 LMQA 158

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 11/59 (18%)

Query: 56  AAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI 109
           AA Y   E+  +      A      I   + +G T L  A    K       + F + I
Sbjct: 117 AAGYVRPEV-VEALVELGAD-----IEVEDERGLTALELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.8 bits (94), Expect = 8e-05
 Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 10/56 (17%)

Query: 53  LDVAAKYGHGEISAKI----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
              AA+    +                ++  +  G T L   A  G      +L +
Sbjct: 48  WWTAARKADEQA-LSQLLEDRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAE 97

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 9/66 (13%)

Query: 45  SGKSPFSLLDVAAKYGHGEISAKIAQYYPFF------INKTNNQGDTPLHCAARAGKLNT 98
             K     +         + +  I  Y   F      +   +  G T L    R  K   
Sbjct: 113 PYKIV---VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169

Query: 99  ATVLVD 104
             ++ D
Sbjct: 170 LKMMED 175

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 45  SGKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTA 99
           +G++    L +AA+Y   +  AK      A       N  +N G TPLH A  A      
Sbjct: 56  TGETA---LHLAARYSRSDA-AKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVF 106

Query: 100 TVLV 103
            +L+
Sbjct: 107 QILI 110

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 28/113 (24%)

Query: 5   NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--------SSGKSPFSLLDVA 56
           +L +  D T ++ L LA     +D  + +       +          + G++P   L  A
Sbjct: 48  SLHNQTDRTGETALHLAARYSRSDAAKRL-------LEASADANIQDNMGRTP---LHAA 97

Query: 57  AKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                  +  +I     A      ++   + G TPL  AAR         L++
Sbjct: 98  VSADAQGV-FQILIRNRATD----LDARMHDGTTPLILAARLAVEGMLEDLIN 145

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           GKS    L  AA   + +  A +     A       +  NN+ +TPL  AAR G   TA 
Sbjct: 157 GKSA---LHWAAAVNNVDA-AVVLLKNGAN-----KDMQNNREETPLFLAAREGSYETAK 207

Query: 101 VLVD 104
           VL+D
Sbjct: 208 VLLD 211

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 21/102 (20%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEISA 66
           D   KS L  A  + N D    +L++   G +     +  ++P   L +AA+ G  E  A
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETP---LFLAAREGSYET-A 206

Query: 67  KI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
           K+     A       + T++    P   A      +   +L 
Sbjct: 207 KVLLDHFAN-----RDITDHMDRLPRDIAQERMHHDIVRLLD 243

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 16/72 (22%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKIAQYYP------FFI-------NKTNNQGDTPLHCAAR 92
           G +P   L +A+  G G  +    +          FI       N+T+  G+T LH AAR
Sbjct: 10  GFTP---LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 93  AGKLNTATVLVD 104
             + + A  L++
Sbjct: 67  YSRSDAAKRLLE 78

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  A   G+  +   +     A      ++  N +G++ L  A +   +     L +
Sbjct: 181 LHWAVLAGNTTV-ISLLLEAGAN-----VDAQNIKGESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +  A +YG  E   +             + + + +  T LH AA   +++     + 
Sbjct: 13  IVKATQYGIYER-CRELVEAGYD-----VRQPDKENVTLLHWAAINNRIDLVKYYIS 63

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  A + GH  +         A       +  + +G + +H AA+ G  +    L+ 
Sbjct: 80  LHWATRQGHLSM-VVQLMKYGAD-----PSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 31/109 (28%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--------SSGKSPFSLLDVAAKYGHG 62
           D    S + LA +  +T ++ Y+       I+          +G +P   L  AA   H 
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYL-------IAKGQDVDMMDQNGMTP---LMWAAYRTH- 154

Query: 63  EISAKIAQYYPFFIN-------KTNNQGDTPLHCAARAGKLNTATVLVD 104
             S    +     +              +T LH A  AG     ++L++
Sbjct: 155 --SVDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +   ++     +  A + G       LV+
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVE 30

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           GK+P   L  +  +G+ E+ +       A      +N  N +G+TPL  A++ G+     
Sbjct: 101 GKTP---LMWSIIFGYSEM-SYFLLEHGAN-----VNDRNLEGETPLIVASKYGRSEIVK 151

Query: 101 VLVD 104
            L++
Sbjct: 152 KLLE 155

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 39.7 bits (94), Expect = 9e-05
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 7/52 (13%)

Query: 53  LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
             +  +    +          F  N  ++   TPL  A   G  N    LV+
Sbjct: 12  EKIKDEKSINQNLD-------FLRNYRDSYNRTPLMVACMLGMENAIDKLVE 56

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L VA   G              +     +   + +G T L  A +  +L  A  L+ 
Sbjct: 39  LMVACMLGMENA-IDKLVENFDK-----LEDKDIEGSTALIWAVKNNRLGIAEKLLS 89

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 11/57 (19%)

Query: 56  AAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAK 107
           A+KYG  EI  K      A      I+  +  G T    A   G+     +  +  +
Sbjct: 141 ASKYGRSEI-VKKLLELGAD-----ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 51  SLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +LL+ A +    ++  +I      Q     +++ + +G+TPL+ A     +  A  L+D
Sbjct: 8   ALLEAANQRDTKKV-KEILQDTTYQ-----VDEVDTEGNTPLNIAVHNNDIEIAKALID 60

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 13/64 (20%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
             SP      A   G  EI                +NK N  G   L  AA  G ++   
Sbjct: 72  SDSP---YLYAGAQGRTEI-LAYMLKHATPD----LNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 101 VLVD 104
           +L++
Sbjct: 124 LLLE 127

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L++A      EI AK      A      IN  N+  D+P   A   G+      ++ 
Sbjct: 43  LNIAVHNNDIEI-AKALIDRGAD-----INLQNSISDSPYLYAGAQGRTEILAYMLK 93

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 11/56 (19%)

Query: 56  AAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFA 106
           AA Y   E+  +      A      I   + +G T L  A    K       + F 
Sbjct: 118 AAGYVRPEV-VEALVELGAD-----IEVEDERGLTALELAREILKTTPKGNPMQFG 167

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 20/111 (18%)

Query: 1   GKVLNLVHLNDTTNKSPLSLAIEMEN--TDVLEYILRSLPSGISW-SSGKSPFSLLDVAA 57
           G+V N +  + T  +  +   IE ++  +        S        S  ++P      AA
Sbjct: 1   GEV-NKIIGSRTAGEGAMEYLIEWKDGHSPSWVP---SSYIAADVVSEYETP---WWTAA 53

Query: 58  KYGHGEISAKI----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +    +                ++  +  G T L   A  G      +L +
Sbjct: 54  RKADEQA-LSQLLEDRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAE 98

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.7 bits (94), Expect = 5e-05
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L  AA+ G  +   +I     A      +N  +  G TPL+ A   G L    VL+ 
Sbjct: 18  LLEAARAGQDDE-VRILMANGAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLLK 68

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.3 bits (93), Expect = 6e-05
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 14/64 (21%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTAT 100
           G +P   L +A  +GH EI  ++     A      +N  +  G TPLH AA  G L  A 
Sbjct: 47  GLTP---LYLATAHGHLEI-VEVLLKNGAD-----VNAVDAIGFTPLHLAAFIGHLEIAE 97

Query: 101 VLVD 104
           VL+ 
Sbjct: 98  VLLK 101

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 11/55 (20%)

Query: 53  LDVAAKYGHGEISAKI-----AQYYPFFINKTNNQGDTPLHCAARAGKLNTATVL 102
           L +AA  GH EI A++     A      +N  +  G T    +   G  + A +L
Sbjct: 84  LHLAAFIGHLEI-AEVLLKHGAD-----VNAQDKFGKTAFDISIGNGNEDLAEIL 132

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 18/104 (17%)

Query: 17  PLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEISAKIAQYY 72
           PLSLA       ++ Y+  +           S G +    L VA      E +  + + Y
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL-VAIADNTRENTKFVTKMY 201

Query: 73  PFFINK-------------TNNQGDTPLHCAARAGKLNTATVLV 103
              + K              NN G +PL  AA+ GK+     ++
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 6   LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEI 64
           L H+  T+  +  S A +     ++ +I++       S ++ K          +      
Sbjct: 205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 264

Query: 65  SAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           +  +       +N  ++ GDT L+ AAR G ++    L+D
Sbjct: 265 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 10  NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEIS 65
               +++ L LA+   +   L  +   + +  +       G +    L       + E  
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA---LHYCCLTDNAEC- 220

Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
            K+       I   N  G+TPL  A R    +   +L 
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.94
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.94
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.83

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.4e-33  Score=178.74  Aligned_cols=129  Identities=22%  Similarity=0.248  Sum_probs=122.8

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|.+|.||||+|+..++.+++++|++.+++  ++.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus        30 vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad--~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gadvn~~d~~G~Tp  106 (169)
T 4gpm_A           30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD--VNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDSDGRTP  106 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc--hhhhccCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCCH
Confidence            578899999999999999999999999999999  99999999999999999999999999995 689999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhhC
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNTA  149 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~a  149 (149)
                      ||+|+..|+.+++++|++.|     ++++      .+|..|+|||++|+..|+.+++++|.+.
T Consensus       107 Lh~A~~~g~~~~v~~Ll~~g-----ad~~------~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  158 (169)
T 4gpm_A          107 LHHAAENGHKEVVKLLISKG-----ADVN------TSDSDGRTPLDLAREHGNEEVVKLLEKQ  158 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-----CCcc------ccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999999999     8777      7999999999999999999999999763

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.98  E-value=1.2e-31  Score=164.29  Aligned_cols=128  Identities=17%  Similarity=0.098  Sum_probs=120.8

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCC-CC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQ-GD   84 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-g~   84 (149)
                      .++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+. ++.+++++|++ .+++++.+|.. |.
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD--PNALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLT   79 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTB
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC--cCCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCC
Confidence            4678899999999999999999999999999988  88999999999999999 99999999996 58999999999 99


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||||+|+..|+.+++++|+++|     ++++      .++..|.|||++|+..++.+++++|.+
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~g-----a~~~------~~d~~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAG-----ARLD------VCDAWGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTC-----CCCC------CCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-----CCCC------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999998     7777      789999999999999999999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.5e-30  Score=163.89  Aligned_cols=129  Identities=21%  Similarity=0.189  Sum_probs=122.0

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.|
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t  104 (172)
T 3v30_A           28 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--PHILAKERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGT  104 (172)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCC
T ss_pred             cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--chhhcccCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence            4678899999999999999999999999999999  88999999999999999999999999995 58999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|++.|     ++++      .++..|.||+++|+..++.+++++|.+
T Consensus       105 ~L~~A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A          105 PLLYAVRGNHVKCVEALLARG-----ADLT------TEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-----CCcc------ccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            999999999999999999998     7777      789999999999999999999999874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=3e-30  Score=160.82  Aligned_cols=124  Identities=19%  Similarity=0.152  Sum_probs=117.7

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHH
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHC   89 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~   89 (149)
                      .|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||||+
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~  106 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS--RDARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHW  106 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcChHHHHHHHHH-cCCCCCCCCCCCCCHHHH
Confidence            578899999999999999999999999988  88899999999999999999999999995 689999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           90 AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |+..|+.+++++|+++|     ++++      .++..|.||+++|+..|+.+++++|+
T Consensus       107 A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B          107 ATEHNHQEVVELLIKYG-----ADVH------TQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHcC-----CCcc------ccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence            99999999999999999     7777      78999999999999999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=6.6e-30  Score=161.70  Aligned_cols=128  Identities=23%  Similarity=0.272  Sum_probs=120.5

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||
T Consensus        40 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~  116 (169)
T 2y1l_E           40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD--VNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTP  116 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCH
Confidence            467789999999999999999999999999988  88899999999999999999999999995 689999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|+++|     ++++      .+|..|.||+++|+..|+.+++++|.+
T Consensus       117 L~~A~~~~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          117 LHLAAMFGHLEIVEVLLKNG-----ADVN------AQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcC-----CCCC------CcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            99999999999999999998     7776      789999999999999999999999975

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=5.3e-30  Score=161.70  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=120.8

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.|
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t  104 (167)
T 3v31_A           28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGT  104 (167)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCC
T ss_pred             CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCcCCCCCCC
Confidence            3677899999999999999999999999999988  88889999999999999999999999996 48999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|++.|     ++++      .++..|.||+++|+..|+.+++++|.+
T Consensus       105 ~L~~A~~~~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A          105 PLLYAVHGNHVKCVKMLLESG-----ADPT------IETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-----CCCC------CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999998     7777      789999999999999999999999864

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=8.1e-30  Score=164.22  Aligned_cols=128  Identities=17%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||
T Consensus        61 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~  137 (192)
T 2rfm_A           61 LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN--VNTKDFSGKTPLMWSIIFGYSEMSYFLLE-HGANVNDRNLEGETP  137 (192)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCH
T ss_pred             cccccccCccHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCH
Confidence            455667777777777777777777777777777  77777777788888887788888887774 477777777778888


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|+++|     ++++      .++..|.||+++|+..|+.+++++|.+
T Consensus       138 L~~A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          138 LIVASKYGRSEIVKKLLELG-----ADIS------ARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT-----CCTT------CBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCC-----CCCC------CcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            88888888888888888777     6665      678888888888888888888888764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=3.6e-30  Score=157.63  Aligned_cols=125  Identities=19%  Similarity=0.160  Sum_probs=116.5

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHH
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHC   89 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~   89 (149)
                      ....+.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||||+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~   86 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHL   86 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHH
Confidence            345688999999999999999999999988  88999999999999999999999999995 589999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           90 AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+..|+.+++++|+++|     ++++      .+|..|.|||++|+..|+.+++++|.+
T Consensus        87 A~~~~~~~~v~~Ll~~g-----~~~~------~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHG-----ADVN------AQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HHHHTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcC-----CCCc------CcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999998     7776      789999999999999999999999875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.9e-30  Score=173.39  Aligned_cols=128  Identities=23%  Similarity=0.251  Sum_probs=119.2

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.||+++|+..++.+++++|++ .|++++.+|..|.||
T Consensus        79 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~~g~Tp  155 (269)
T 4b93_B           79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN--AGARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTP  155 (269)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCH
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC--cCccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCCCCCCH
Confidence            567899999999999999999999999999998  88889999999999999999999999995 589999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|+++|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus       156 L~~A~~~g~~~~v~~Ll~~g-----advn------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  206 (269)
T 4b93_B          156 LIYACSGGHHELVALLLQHG-----ASIN------ASNNKGNTALHEAVIEKHVFVVELLLL  206 (269)
T ss_dssp             HHHHHHTTCGGGHHHHHHTT-----CCTT------CBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHCC-----CCCC------ccccCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999998     7777      789999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=3.1e-29  Score=150.95  Aligned_cols=122  Identities=25%  Similarity=0.279  Sum_probs=115.4

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHH
Q 041026           13 TNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAAR   92 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~   92 (149)
                      +|.||||+|+..|+.+++++|++.+.+  ++..+..|.||||+|+..++.+++++|++ .+.+++.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC--CCCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHH
Confidence            589999999999999999999999988  88889999999999999999999999995 589999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           93 AGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        93 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .|+.+++++|++.|     ++++      .++..|.||+++|+..++.+++++|.+
T Consensus        78 ~~~~~~~~~Ll~~g-----~~~~------~~~~~g~t~l~~A~~~~~~~~~~~Ll~  122 (126)
T 1n0r_A           78 NGHLEVVKLLLEAG-----ADVN------AKDKNGRTPLHLAARNGHLEVVKLLLE  122 (126)
T ss_dssp             TTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cChHHHHHHHHHcC-----CCCc------ccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999999998     7766      789999999999999999999999874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=5.2e-30  Score=165.09  Aligned_cols=129  Identities=19%  Similarity=0.142  Sum_probs=121.5

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      +++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++. +.+++.+|..|.|
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t  103 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKT  103 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc--cccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCc
Confidence            4677899999999999999999999999999988  888999999999999999999999999965 8899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|++.|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~  155 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHG-----ANVN------DRNLEGETPLIVASKYGRSEIVKKLLE  155 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT-----CCSS------CCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-----CCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999998     7777      789999999999999999999999864

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=3.5e-30  Score=161.06  Aligned_cols=129  Identities=17%  Similarity=0.071  Sum_probs=115.6

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      ...+..+..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+ .++.+++++|++ .+++++.+|..|.
T Consensus         3 p~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~~g~   78 (156)
T 1bi7_B            3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATL   78 (156)
T ss_dssp             -------CCSTTHHHHHHHHTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTC
T ss_pred             CCccCCCccchHHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCCCCC
Confidence            34567789999999999999999999999999988  8899999999999985 899999999995 5899999999999


Q ss_pred             c-HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           85 T-PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        85 t-plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      | |||+|+..|+.+++++|+++|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus        79 ttpL~~A~~~~~~~~v~~Ll~~g-----a~~~------~~d~~g~tpl~~A~~~~~~~~v~~Ll~  132 (156)
T 1bi7_B           79 TRPVHDAAREGFLDTLVVLHRAG-----ARLD------VRDAWGRLPVDLAEELGHRDVARYLRA  132 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHT-----CCSS------CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cHHHHHHHHCCCHHHHHHHHHcC-----CCCc------ccCCCCCCHHHHHHHhCHHHHHHHHHH
Confidence            9 999999999999999999999     8777      789999999999999999999999875

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.7e-29  Score=160.05  Aligned_cols=119  Identities=23%  Similarity=0.206  Sum_probs=113.2

Q ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCC
Q 041026           16 SPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGK   95 (149)
Q Consensus        16 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~   95 (149)
                      ++|+.||+.|+.++++.|++.|++  ++.++..|+||||+|+..++.+++++|++ .+++++.+|..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhccCCCCHHHHHHHcCC
Confidence            369999999999999999999999  99999999999999999999999999995 689999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           96 LNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        96 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .+++++|+++|     ++++      .+|..|+||||+|+..|+.+++++|.+
T Consensus        83 ~~~v~~Ll~~g-----advn------~~d~~G~TpLh~A~~~g~~~~v~~Ll~  124 (169)
T 4gpm_A           83 KEVVKLLISKG-----ADVN------AKDSDGRTPLHHAAENGHKEVVKLLIS  124 (169)
T ss_dssp             HHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCc-----CCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999     8777      789999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.1e-29  Score=159.32  Aligned_cols=128  Identities=20%  Similarity=0.263  Sum_probs=118.5

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|..|.||||+|+. |+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||
T Consensus        31 ~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~  106 (162)
T 1ihb_A           31 VNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLP  106 (162)
T ss_dssp             TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             ccccCccCccHHHHHHc-CcHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence            46778999999999999 999999999999988  88899999999999999999999999995 689999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|++++     ++.     ++.++..|.|||++|+..|+.+++++|.+
T Consensus       107 L~~A~~~~~~~~v~~Ll~~g-----~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A          107 LHLAAKEGHLRVVEFLVKHT-----ASN-----VGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHS-----CCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcc-----CCC-----CCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999     542     23789999999999999999999999875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.97  E-value=1.7e-30  Score=159.14  Aligned_cols=126  Identities=19%  Similarity=0.242  Sum_probs=117.5

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHH
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      .+|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHH
Confidence            5789999999999999999999999999998  88999999999999999999999999995 68999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           89 CAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        89 ~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +|+..|+.+++++|+++|     ++++      .+|..|.||+++|+..+..+++++|++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYG-----ASRN------AVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHHHcCCHHHHHHHHHcC-----CCCC------CCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            999999999999999998     7777      899999999999999999999988765

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=1.4e-29  Score=159.51  Aligned_cols=127  Identities=23%  Similarity=0.232  Sum_probs=115.9

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++..+..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~  111 (165)
T 3twr_A           35 CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTP  111 (165)
T ss_dssp             CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCH
T ss_pred             ccccccCCCCHHHHHHHcChHHHHHHHHhcCCC--CCccCCCCCCHHHHHHHcCcHHHHHHHHh-CCCCCCCcCCCCCCH
Confidence            345667889999999999999999999999988  88899999999999999999999999995 689999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|+++|     ++++      .++..|.||+++|+. ++.+++++|.+
T Consensus       112 L~~A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A          112 LHEAAAKGKYEICKLLLQHG-----ADPT------KKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcC-----CCCc------ccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            99999999999999999998     7777      789999999999776 89999999875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=3.7e-29  Score=156.11  Aligned_cols=127  Identities=20%  Similarity=0.125  Sum_probs=117.3

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++..|..|.||||+ +..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t  103 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGAS--PNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGAL  103 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCC
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCc
Confidence            456788999999999 999999999999999998  89999999999999999999999999995 68999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|++..            +++.++..|.||+++|+..|+.+++++|.+
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~~------------~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          104 PIHLAVQEGHTAVVSFLAAES------------DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTS------------CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHhChHHHHHHHHhcc------------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999999999999863            344789999999999999999999999864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.4e-29  Score=161.53  Aligned_cols=129  Identities=26%  Similarity=0.256  Sum_probs=117.7

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.|
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t  107 (179)
T 3f6q_A           31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNV  107 (179)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred             cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCC
Confidence            3677888999999999999999999999999988  88889999999999999999999999995 58999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|+++|     ++++      .++..|.||+++|+..++.+++++|.+
T Consensus       108 ~L~~A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A          108 PLHYACFWGQDQVAEDLVANG-----ALVS------ICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-----CCSS------BCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-----CCcc------hhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998     7777      789999999999999999999998875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=4.9e-29  Score=167.22  Aligned_cols=135  Identities=15%  Similarity=0.047  Sum_probs=118.0

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCC--------------CCCCcHHHHHHHhCcHHHHHHHHHh-
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSG--------------KSPFSLLDVAAKYGHGEISAKIAQY-   71 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~Ll~~-   71 (149)
                      ++..|..|.||||+|+..|+.+++++|++.+++  ++..+              ..|.||||+|+..|+.+++++|++. 
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGAD--VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC--cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            344556999999999999999999999999998  77777              6899999999999999999999963 


Q ss_pred             -CCcceecccCCCCcHHHHHHHcCC---------HHHHHHHHHhhhcCCCCCCCC-ccccccccCCCCCHHHHHHHcCCH
Q 041026           72 -YPFFINKTNNQGDTPLHCAARAGK---------LNTATVLVDFAKHIPSTSQPP-VDLLRMENAMGNTVLREALFMLGR  140 (149)
Q Consensus        72 -~~~~~~~~~~~g~tplh~a~~~g~---------~~~v~~Ll~~~~~~~~~~~~~-~~~~~~~~~~g~t~l~~A~~~~~~  140 (149)
                       .|++++.+|..|+||||+|+..++         .+++++|+++|     ++++. ....+.+|..|.||||+|+..|+.
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-----a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-----AKLFPDTNLEALLNNDGLSPLMMAAKTGKI  238 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-----HHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-----cccccccchhhcccCCCCCHHHHHHHcCCH
Confidence             689999999999999999999888         79999999999     54420 112247899999999999999999


Q ss_pred             HHHHhhhh
Q 041026          141 VNVRRTNT  148 (149)
Q Consensus       141 ~~~~~L~~  148 (149)
                      +++++|.+
T Consensus       239 ~~v~~Ll~  246 (260)
T 3jxi_A          239 GIFQHIIR  246 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999864

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=2.7e-28  Score=161.08  Aligned_cols=133  Identities=18%  Similarity=0.095  Sum_probs=110.0

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCC-------------CCCcHHHHHHHhCcHHHHHHHHHhCCc
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGK-------------SPFSLLDVAAKYGHGEISAKIAQYYPF   74 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-------------~~~~~l~~a~~~~~~~~~~~Ll~~~~~   74 (149)
                      +.+|..|.||||+|+..|+.+++++|++.+++  ++..+.             .|.||||+|+..|+.+++++|++ .|+
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga  145 (232)
T 2rfa_A           69 TSELYEGQTALHIAVINQNVNLVRALLARGAS--VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-HGA  145 (232)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-TTC
T ss_pred             cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCC--CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence            45677888888888888888888888888887  555543             68899999999999999999985 588


Q ss_pred             ceecccCCCCcHHHHHHHcCCHHHH----HHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           75 FINKTNNQGDTPLHCAARAGKLNTA----TVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        75 ~~~~~~~~g~tplh~a~~~g~~~~v----~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +++.+|..|.||||+|+..|+.+++    ++|++.|     ++.......+.+|..|.|||++|+..|+.+++++|.+
T Consensus       146 ~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-----~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD-----GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             CTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTT-----CSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcC-----CchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8888899999999999999988877    8888888     5543222335789999999999999999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=166.61  Aligned_cols=131  Identities=19%  Similarity=0.215  Sum_probs=112.6

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCC-CC------------------------------------ccccCCCC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLP-SG------------------------------------ISWSSGKS   48 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~-~~------------------------------------~~~~~~~~   48 (149)
                      .++.+|.+|.||||+|+..|+.+++++|++.++ +.                                    ..+..+..
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  182 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA  182 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence            378899999999999999999999999999987 30                                    11223445


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHH-hhhcCCCCCCCCccccccccCCC
Q 041026           49 PFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD-FAKHIPSTSQPPVDLLRMENAMG  127 (149)
Q Consensus        49 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~g  127 (149)
                      |.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++ .|     ++++      .+|..|
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g-----ad~~------~~d~~g  250 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS-----CDIS------LTDRDG  250 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT-----CCTT------CCCTTS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC-----CCCc------CcCCCC
Confidence            8889999999999999999995 589999999999999999999999999999998 66     7776      789999


Q ss_pred             CCHHHHHHHcCCHHHHHhhhh
Q 041026          128 NTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       128 ~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .|||++|+..|+.+++++|.+
T Consensus       251 ~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          251 STALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999998864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=1.3e-28  Score=164.79  Aligned_cols=128  Identities=23%  Similarity=0.196  Sum_probs=96.0

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .|++++.+|..|.||
T Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tp  193 (253)
T 1yyh_A          117 LDARMHDGTTPLILAARLAVEGMLEDLINSHAD--VNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETP  193 (253)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC--TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence            455566777777777777777777777777766  66777777777777777777777777774 477777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|+++|     ++++      .+|..|.||+++|+..|+.+++++|..
T Consensus       194 L~~A~~~~~~~~v~~Ll~~g-----a~~~------~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          194 LFLAAREGSYETAKVLLDHF-----ANRD------ITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT-----CCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHcC-----CCcc------ccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            77777777777777777777     6665      678888888888888888888887754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=9.4e-29  Score=165.58  Aligned_cols=132  Identities=18%  Similarity=0.116  Sum_probs=116.4

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCC-------------CCcHHHHHHHhCcHHHHHHHHHh--CCc
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKS-------------PFSLLDVAAKYGHGEISAKIAQY--YPF   74 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~Ll~~--~~~   74 (149)
                      +|..|.||||+|+..|+.+++++|++.+++  ++..+..             |.||||+|+..|+.+++++|++.  .|+
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga  163 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGAD--VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA  163 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCC--CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence            457899999999999999999999999998  7777775             99999999999999999999963  699


Q ss_pred             ceecccCCCCcHHHHHHH--cCCHH-------HHHHHHHhhhcCCCCCCCC-ccccccccCCCCCHHHHHHHcCCHHHHH
Q 041026           75 FINKTNNQGDTPLHCAAR--AGKLN-------TATVLVDFAKHIPSTSQPP-VDLLRMENAMGNTVLREALFMLGRVNVR  144 (149)
Q Consensus        75 ~~~~~~~~g~tplh~a~~--~g~~~-------~v~~Ll~~~~~~~~~~~~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~~  144 (149)
                      +++.+|..|+||||+|+.  .++.+       ++++|+++|     +++.. ....+.+|..|.||||+|+..|+.++++
T Consensus       164 ~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-----a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-----ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-----HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-----CCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence            999999999999999999  78888       999999999     54410 0011478999999999999999999999


Q ss_pred             hhhh
Q 041026          145 RTNT  148 (149)
Q Consensus       145 ~L~~  148 (149)
                      +|.+
T Consensus       239 ~Ll~  242 (256)
T 2etb_A          239 HILQ  242 (256)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=3.2e-28  Score=153.49  Aligned_cols=122  Identities=15%  Similarity=-0.000  Sum_probs=115.5

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHH
Q 041026           13 TNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAAR   92 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~   92 (149)
                      .|.||||.|+..|+.+++++|++.+.+  ++..+..|.||||+|+..++.+++++|++ .+++++..+..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV--INHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHH
Confidence            589999999999999999999999988  88999999999999999999999999995 589999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           93 AGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        93 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .|+.+++++|++.|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus        79 ~~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~  123 (167)
T 3v31_A           79 KGYTDIVKMLLDCG-----VDVN------EYDWNGGTPLLYAVHGNHVKCVKMLLE  123 (167)
T ss_dssp             HTCHHHHHHHHHHT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCC-----CCCC------cCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999998     7777      789999999999999999999999865

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=5.5e-28  Score=158.63  Aligned_cols=129  Identities=22%  Similarity=0.188  Sum_probs=96.9

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++.+|..|.||||+|+..++.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.|
T Consensus        84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t  160 (223)
T 2f8y_A           84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD--VNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREET  160 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCC
T ss_pred             CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC--CcCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCcC
Confidence            3455566777777777777777777777777776  66677777777777777777777777774 47777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|+++|     ++++      .++..|.||+++|+..++.+++++|.+
T Consensus       161 ~L~~A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~t~l~~A~~~~~~~i~~~L~~  212 (223)
T 2f8y_A          161 PLFLAAREGSYETAKVLLDHF-----ANRD------ITDHMDRLPRDIAQERMHHDIVRLLDE  212 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT-----CCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-----CCCc------cccccCCCHHHHHHHhcchHHHHHHHH
Confidence            777777777777777777777     6555      677788888888888888888887764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=4.3e-28  Score=156.87  Aligned_cols=99  Identities=21%  Similarity=0.206  Sum_probs=90.3

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++..|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++..+.+++..+..|.|
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  108 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD--INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN  108 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCc
Confidence            4667788999999999999999999999999988  88888999999999999999999999997778888889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhh
Q 041026           86 PLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~  106 (149)
                      |||+|+..|+.+++++|++.+
T Consensus       109 ~L~~A~~~~~~~~v~~Ll~~g  129 (201)
T 3hra_A          109 ALIPAAEKGHIDNVKLLLEDG  129 (201)
T ss_dssp             SHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999987

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=6e-28  Score=159.41  Aligned_cols=129  Identities=16%  Similarity=0.197  Sum_probs=115.1

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCcc-----ccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceeccc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGIS-----WSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTN   80 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~-----~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~   80 (149)
                      .++.+|.+|.||||+|+..|+.+++++|++.+++  +     +..+..|.||||+|+..|+.+++++|++ .+++++..+
T Consensus        29 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~  105 (232)
T 2rfa_A           29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE--LVFEPMTSELYEGQTALHIAVINQNVNLVRALLA-RGASVSARA  105 (232)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG--GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCch--hccccccccCCCCcCHHHHHHHcCCHHHHHHHHh-CCCCCCccc
Confidence            3567889999999999999999999999999987  4     5567789999999999999999999995 588887766


Q ss_pred             C-------------CCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHH----
Q 041026           81 N-------------QGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNV----  143 (149)
Q Consensus        81 ~-------------~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~----  143 (149)
                      .             .|.||||+|+..|+.+++++|+++|     ++++      .+|..|.||||+|+..++.+++    
T Consensus       106 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~------~~d~~g~t~L~~A~~~~~~~~~~~i~  174 (232)
T 2rfa_A          106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-----ADIR------AQDSLGNTVLHILILQPNKTFACQMY  174 (232)
T ss_dssp             CSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHTCSCHHHHHHHH
T ss_pred             CCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCC------CCCCCCCCHHHHHHHcCChHHHHHHH
Confidence            5             7999999999999999999999998     7777      7899999999999999999988    


Q ss_pred             Hhhhh
Q 041026          144 RRTNT  148 (149)
Q Consensus       144 ~~L~~  148 (149)
                      ++|.+
T Consensus       175 ~~Ll~  179 (232)
T 2rfa_A          175 NLLLS  179 (232)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.96  E-value=3.7e-28  Score=146.22  Aligned_cols=119  Identities=15%  Similarity=0.084  Sum_probs=107.3

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCA   90 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a   90 (149)
                      +..|.||||+|+..|+.+++++|++.+.+  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC--TTSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC--cCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHH
Confidence            56789999999999999999999999988  88999999999999999999999999995 6899999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhh
Q 041026           91 ARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRT  146 (149)
Q Consensus        91 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  146 (149)
                      +..|+.+++++|+++|     ++++      .+|..|.||+++|   ...++.++|
T Consensus        81 ~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~t~l~~A---~~~~~~~ll  122 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKG-----ADKT------VKGPDGLTAFEAT---DNQAIKALL  122 (123)
T ss_dssp             HHHTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHC---CCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcC-----CCCC------CcCCCCCCHHHHh---CCHHHHHHh
Confidence            9999999999999998     7777      7999999999999   455555555

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=1e-27  Score=157.32  Aligned_cols=96  Identities=18%  Similarity=0.148  Sum_probs=62.1

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHH
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      ..|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++..+.+++..+..|.||||
T Consensus        20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   97 (223)
T 2f8y_A           20 QTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI   97 (223)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHH
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHH
Confidence            3466677777777777777777777777666  66666666666666666666666666665433355555666666666


Q ss_pred             HHHHcCCHHHHHHHHHhh
Q 041026           89 CAARAGKLNTATVLVDFA  106 (149)
Q Consensus        89 ~a~~~g~~~~v~~Ll~~~  106 (149)
                      +|+..|+.+++++|++.+
T Consensus        98 ~A~~~~~~~~~~~Ll~~g  115 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSH  115 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTT
T ss_pred             HHHHhCcHHHHHHHHHcC
Confidence            666666666666666655

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.9e-28  Score=165.50  Aligned_cols=132  Identities=17%  Similarity=0.101  Sum_probs=116.8

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCC--------------CCCcHHHHHHHhCcHHHHHHHHHh--CC
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGK--------------SPFSLLDVAAKYGHGEISAKIAQY--YP   73 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~Ll~~--~~   73 (149)
                      +|..|.||||+|+..|+.+++++|++.+++  ++..+.              .|.||||+|+..|+.+++++|++.  .|
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  174 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGAD--VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP  174 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCC--cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC
Confidence            677999999999999999999999999998  777776              799999999999999999999963  68


Q ss_pred             cceecccCCCCcHHHHHHHcCC---------HHHHHHHHHhhhcCCCCCCCC-ccccccccCCCCCHHHHHHHcCCHHHH
Q 041026           74 FFINKTNNQGDTPLHCAARAGK---------LNTATVLVDFAKHIPSTSQPP-VDLLRMENAMGNTVLREALFMLGRVNV  143 (149)
Q Consensus        74 ~~~~~~~~~g~tplh~a~~~g~---------~~~v~~Ll~~~~~~~~~~~~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~  143 (149)
                      ++++.+|..|+||||+|+..|+         .+++++|++.|     ++++. ...++.+|..|.||||+|+..|+.+++
T Consensus       175 ad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-----a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv  249 (273)
T 2pnn_A          175 ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-----AKLHPTLKLEEITNRKGLTPLALAASSGKIGVL  249 (273)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-----HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-----hhcccccccccccCCCCCCHHHHHHHhChHHHH
Confidence            9999999999999999999998         79999999999     54431 111235899999999999999999999


Q ss_pred             Hhhhh
Q 041026          144 RRTNT  148 (149)
Q Consensus       144 ~~L~~  148 (149)
                      ++|.+
T Consensus       250 ~~Ll~  254 (273)
T 2pnn_A          250 AYILQ  254 (273)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.96  E-value=2.3e-29  Score=165.49  Aligned_cols=130  Identities=20%  Similarity=0.149  Sum_probs=117.7

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++..|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++..+++++.+|..|.|
T Consensus        65 ~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~t  142 (222)
T 3ehr_A           65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG--VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDT  142 (222)
T ss_dssp             HHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCC
T ss_pred             hccccccccccccccccccCcHHHHHHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCC
Confidence            3455677889999999999999999999999988  88899999999999999999999999996558999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|+++|     ++++      .+|..|.||+++|+..++.++++.|..
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~t~l~~A~~~~~~~~l~~l~~  194 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKG-----ARTD------LRNIEKKLAFDMATNAACASLLKKKQG  194 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHT-----CCSC------CCCTTSCCHHHHCCSHHHHHHHC----
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-----CCCc------cccCCCCCHHHHhcchhHHHHHHHHhc
Confidence            999999999999999999999     8777      899999999999999999999987754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=5.4e-28  Score=161.80  Aligned_cols=96  Identities=18%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHH
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      ..|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++..+.+++.++..|.||||
T Consensus        52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~  129 (253)
T 1yyh_A           52 QTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI  129 (253)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHH
Confidence            3456666666666666666666666666665  55555566666666666666666666654322244444445555555


Q ss_pred             HHHHcCCHHHHHHHHHhh
Q 041026           89 CAARAGKLNTATVLVDFA  106 (149)
Q Consensus        89 ~a~~~g~~~~v~~Ll~~~  106 (149)
                      +|+..|+.+++++|++.|
T Consensus       130 ~A~~~~~~~~v~~Ll~~g  147 (253)
T 1yyh_A          130 LAARLAVEGMLEDLINSH  147 (253)
T ss_dssp             HHHHHTCSSHHHHHHHTT
T ss_pred             HHHHcChHHHHHHHHHcC
Confidence            555555555555555444

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=1.1e-27  Score=157.89  Aligned_cols=134  Identities=22%  Similarity=0.239  Sum_probs=83.7

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|.+|.||||+|+..|+.+++++|++.+.+  ++..+..|.||||+|+..++.+++++|++ .+.+++.++..|.||
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~  109 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAVNQNGCTP  109 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC--CCCcCCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCCCCCCCCCCH
Confidence            455566667777777777777777777666666  66666666666666666666666666663 356666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCC---------------------------ccccccccCCCCCHHHHHHHcCC
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPP---------------------------VDLLRMENAMGNTVLREALFMLG  139 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~---------------------------~~~~~~~~~~g~t~l~~A~~~~~  139 (149)
                      ||+|+..|+.+++++|++.|     ++++.                           ..+++.++..|.||||+|+..++
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGG-----ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER  184 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCC
Confidence            66666666666666666665     33220                           12223556666666666666666


Q ss_pred             HHHHHhhhh
Q 041026          140 RVNVRRTNT  148 (149)
Q Consensus       140 ~~~~~~L~~  148 (149)
                      .+++++|.+
T Consensus       185 ~~~v~~Ll~  193 (231)
T 3aji_A          185 VEEAKFLVT  193 (231)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=1.3e-27  Score=157.69  Aligned_cols=124  Identities=20%  Similarity=0.097  Sum_probs=106.6

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCA   90 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a   90 (149)
                      +..+.+|||.|+..|+.+.+++++..+.. ..+..+..|.||||+|+..|+.+++++|++ .+.+++.+|..|.||||+|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A   80 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIA   80 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCcCCCCCCHHHHH
Confidence            45688999999999999999999998765 467778999999999999999999999995 5899999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           91 ARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        91 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      +..|+.+++++|++.+     ++++      .++..|.||||+|+..++.+++++|.
T Consensus        81 ~~~~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll  126 (231)
T 3aji_A           81 ASAGXDEIVKALLVKG-----AHVN------AVNQNGCTPLHYAASKNRHEIAVMLL  126 (231)
T ss_dssp             HHHTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCHHHHHHHHHHcC-----CCCC------CCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999998     6555      55666666776666666666666654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=1.1e-27  Score=154.94  Aligned_cols=130  Identities=18%  Similarity=0.110  Sum_probs=119.1

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+.. +++..+..|.||||+|+..++.+++++|++..+.+++.+|..|.||
T Consensus        65 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~  143 (201)
T 3hra_A           65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATP-DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA  143 (201)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc-ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCH
Confidence            467889999999999999999999999965543 3888899999999999999999999999977558999999999999


Q ss_pred             HHHHHHcCC-----HHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGK-----LNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~-----~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..++     .+++++|++.|     ++++      .++..|.||+++|+..|+.+++++|.+
T Consensus       144 L~~A~~~~~~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          144 LIEAVGLREGNQLYQDIVKLLMENG-----ADQS------IKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHHHSSCCSHHHHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHhccchhhHHHHHHHHHHCC-----CCCC------ccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            999999998     89999999999     8777      789999999999999999999999975

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=6.6e-28  Score=163.00  Aligned_cols=62  Identities=11%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHH
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIA   69 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll   69 (149)
                      .++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|+
T Consensus        37 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~tpL~~A~~~~~~~~v~~Ll   98 (282)
T 1oy3_D           37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG--VLVAERGGHTALHLACRVRAHTCACVLL   98 (282)
T ss_dssp             GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--SSCCCTTSCCHHHHHTTTTCHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCcchhHhhh
Confidence            3566677777777777777777777777777766  5555555556666555555555555555

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=6.8e-28  Score=159.66  Aligned_cols=129  Identities=20%  Similarity=0.185  Sum_probs=98.0

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcc------eecc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFF------INKT   79 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~------~~~~   79 (149)
                      .++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++. +.+      ++..
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~  113 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD--PELRDFRGNTPLHLACEQGCLASVGVLTQS-CTTPHLHSILKAT  113 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhHHHHhhcc
Confidence            3566777888888888888888888888888777  777777888888888888888888888853 332      4566


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccC-CCCCHHHHHHHcCCHHHHHhhhh
Q 041026           80 NNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENA-MGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        80 ~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +..|.||||+|+..|+.+++++|++.|     ++++      .++. .|.||||+|+..|+.+++++|.+
T Consensus       114 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  172 (236)
T 1ikn_D          114 NYNGHTCLHLASIHGYLGIVELLVSLG-----ADVN------AQEPCNGRTALHLAVDLQNPDLVSLLLK  172 (236)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHT-----CCTT------CCCTTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            777888888888888888888888877     6655      5665 77788888888888888777754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=162.65  Aligned_cols=130  Identities=15%  Similarity=0.063  Sum_probs=119.3

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      +..+..+.++.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus        12 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~   88 (229)
T 2vge_A           12 RKARRARLNPLVLLLDAALTGELEVVQQAVKEMND--PSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDSHGW   88 (229)
T ss_dssp             CCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCC
T ss_pred             ccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCC
Confidence            34556677889999999999999999999999998  88999999999999999999999999995 5899999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCcccccccc-CCCCCHHHHH--HHcCCHHHHHhhhh
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMEN-AMGNTVLREA--LFMLGRVNVRRTNT  148 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~L~~  148 (149)
                      ||||+|+..|+.+++++|++.|     ++++      .++ ..|.||||+|  +..|+.+++++|.+
T Consensus        89 tpLh~A~~~g~~~~v~~Ll~~g-----a~~~------~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~  144 (229)
T 2vge_A           89 TPLHCAASCNDTVICMALVQHG-----AAIF------ATTLSDGATAFEKCDPYREGYADCATYLAD  144 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTT-----CCTT------CCCSSTTCCTGGGCCTTSTTHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-----CCcc------cccCCCCCCHHHHHHHHhcChHHHHHHHHH
Confidence            9999999999999999999999     7776      564 6999999999  99999999999864

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.2e-27  Score=151.33  Aligned_cols=124  Identities=22%  Similarity=0.162  Sum_probs=115.2

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCA   90 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a   90 (149)
                      ...+.++|++|++.|+.+++++|++.+.+  ++..+..|.||||+|+..|+.+++++|++ .+.+++..|..|.||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHH
Confidence            35678899999999999999999999998  88899999999999999999999999995 5899999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           91 ARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        91 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +..|+.+++++|++.|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus        88 ~~~~~~~~~~~Ll~~g-----~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~  134 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNG-----ADVN------ANDMEGHTPLHLAAMFGHLEIVEVLLK  134 (169)
T ss_dssp             HHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcC-----CCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999998     7776      788999999999999999999999875

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=9e-28  Score=162.32  Aligned_cols=142  Identities=20%  Similarity=0.138  Sum_probs=117.4

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCC-ccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSG-ISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      +++.+|.+|.||||+|+..|+.+++++|++.++.. .++..+..|.||||+|+..|+.+++++|++ .|++++.++..|.
T Consensus         1 i~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~   79 (282)
T 1oy3_D            1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGH   79 (282)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSC
T ss_pred             CCCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCC
Confidence            46789999999999999999999999999988762 256788899999999999999999999995 6899999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCC------------------------------------CCccccccccCCCC
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQ------------------------------------PPVDLLRMENAMGN  128 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~------------------------------------~~~~~~~~~~~~g~  128 (149)
                      ||||+|+..|+.+++++|++.+........                                    .....++.++..|.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            999999999999999999998733110000                                    00123456777888


Q ss_pred             CHHHHHHHcCCHHHHHhhhh
Q 041026          129 TVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       129 t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||||+|+..|+.+++++|.+
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~  179 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRD  179 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHH
Confidence            88888888888888887753

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3.8e-29  Score=160.70  Aligned_cols=127  Identities=9%  Similarity=-0.029  Sum_probs=113.5

Q ss_pred             cccC-CCCCCHHHHHHHhCCH----HHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCc------HHHHHHHHHhCCcce
Q 041026            8 HLND-TTNKSPLSLAIEMENT----DVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGH------GEISAKIAQYYPFFI   76 (149)
Q Consensus         8 ~~~d-~~g~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~------~~~~~~Ll~~~~~~~   76 (149)
                      +..+ ..|.||||+|+..++.    +++++|++.|++  ++.++..|+||||+|+..++      .+++++|++ .|+++
T Consensus        31 ~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad--vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~-~Gadi  107 (186)
T 3t8k_A           31 EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD--IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE-KGADI  107 (186)
T ss_dssp             SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC--SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHH-TTCCS
T ss_pred             ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHH-CCCCC
Confidence            3444 6799999999999975    489999999999  99999999999999999986      578999995 69999


Q ss_pred             ecccCCCC-cHHHHHHHcC-----CHHHHHHHHH-hhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           77 NKTNNQGD-TPLHCAARAG-----KLNTATVLVD-FAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        77 ~~~~~~g~-tplh~a~~~g-----~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +.+|..|. ||||+|+..+     +.+++++|++ .|     ++++      .+|..|.||||+|++.|+.+++++|+.
T Consensus       108 n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-----ad~~------~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-----LQLL------IKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-----CCTT------CCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-----CCCc------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999 9999999844     3569999999 78     8777      899999999999999999999999874

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=4.1e-27  Score=154.85  Aligned_cols=133  Identities=19%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCcccc-CCCCCCcHHHHHHHhCcHHHHHHHHHhCC--cceecccCCCCc
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWS-SGKSPFSLLDVAAKYGHGEISAKIAQYYP--FFINKTNNQGDT   85 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~--~~~~~~~~~g~t   85 (149)
                      .+|..|.||||+|+..|+.+++++|++.+++.+++. .+..|.||||+|+..++.+++++|++ .+  .+++..+..|.|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~t  109 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVT  109 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHS-SSSCCCTTCCCTTCCC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccccCCcCCCC
Confidence            355556666666666666666666666553211333 45555555555555555555555553 23  445555555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCC----------------------------ccccccccCCCCCHHHHHHHc
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPP----------------------------VDLLRMENAMGNTVLREALFM  137 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~----------------------------~~~~~~~~~~g~t~l~~A~~~  137 (149)
                      |||+|+..|+.+++++|++.|     ++++.                            ..+++.++..|.||||+|+..
T Consensus       110 ~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~  184 (228)
T 2dzn_A          110 CLHLAVGKKWFEVSQFLIENG-----ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  184 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHcCCHhHHHHHHHcC-----CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHc
Confidence            555555555555555555555     33330                            122335556666666666666


Q ss_pred             CCHHHHHhhh
Q 041026          138 LGRVNVRRTN  147 (149)
Q Consensus       138 ~~~~~~~~L~  147 (149)
                      |+.+++++|.
T Consensus       185 ~~~~~v~~Ll  194 (228)
T 2dzn_A          185 GHGDAAVLLV  194 (228)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            6666666554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=7.4e-28  Score=151.55  Aligned_cols=126  Identities=16%  Similarity=0.094  Sum_probs=114.5

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHH
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHC   89 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~   89 (149)
                      .|.+|.++|+.|++.|+.+++++|++.... ..+..+..|.||||+|+..++.+++++|++ .+.+++.+|..|.||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV-NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCC-CccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCCCCCHHHH
Confidence            467889999999999999999999986553 366778889999999999999999999995 589999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           90 AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+..|+.+++++|++.|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus        82 A~~~~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~  129 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHG-----AVVN------VADLWKFTPLHEAAAKGKYEICKLLLQ  129 (165)
T ss_dssp             HHHTTCHHHHHHHHHTT-----CCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHhCC-----CCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999998     7777      789999999999999999999999875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=4.7e-28  Score=164.83  Aligned_cols=127  Identities=17%  Similarity=0.064  Sum_probs=111.9

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++.+|.+|.||||+|+..|+.+++++|++.+++  ++..  .|.||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~--~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t   97 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL--KNLL--ENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDDKGNT   97 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG--GSCC--TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CCCC--CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCc
Confidence            3678899999999999999999999999999887  6665  48999999999999999999995 58999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCC-CCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMG-NTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|+++|     ++++      .++..| .||||+|+..|+.+++++|.+
T Consensus        98 ~L~~A~~~g~~~~v~~Ll~~g-----a~~~------~~~~~g~~t~L~~A~~~~~~~~v~~Ll~  150 (285)
T 3kea_A           98 ALYYAVDSGNMQTVKLFVKKN-----WRLM------FYGKTGWKTSFYHAVMLNDVSIVSYFLS  150 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHC-----GGGG------GCSSSGGGSHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHhcC-----CCCC------ccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999998     6555      677788 788888888888888888764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=3.3e-27  Score=160.99  Aligned_cols=128  Identities=18%  Similarity=0.186  Sum_probs=109.4

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceeccc------
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTN------   80 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~------   80 (149)
                      ++..|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .|++++..+      
T Consensus        66 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~  142 (299)
T 1s70_B           66 INYANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTP  142 (299)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCcCCCCCCH
Confidence            566788899999999999999999999999888  88888889999999999999999999985 466554433      


Q ss_pred             ------------------------------------------------------CCCCcHHHHHHHcCCHHHHHHHHHhh
Q 041026           81 ------------------------------------------------------NQGDTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        81 ------------------------------------------------------~~g~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                                                                            ..|.||||+|+..|+.+++++|++.|
T Consensus       143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  222 (299)
T 1s70_B          143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR  222 (299)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence                                                                  35778888889999999999999888


Q ss_pred             hcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          107 KHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                           ++++      .+|..|.||||+|+..|+.+++++|.+
T Consensus       223 -----~d~~------~~d~~g~tpL~~A~~~~~~~~v~~Ll~  253 (299)
T 1s70_B          223 -----YDVN------IKDYDGWTPLHAAAHWGKEEACRILVE  253 (299)
T ss_dssp             -----CCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             -----CCCC------CcCCCCCcHHHHHHhcCCHHHHHHHHH
Confidence                 7776      789999999999999999999999865

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=4.3e-27  Score=154.74  Aligned_cols=126  Identities=19%  Similarity=0.114  Sum_probs=110.8

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++.+|..|.||||+|+..|+.+++++|++.+++  ++.++..|.||||+|+..++.+++++|++..+.+++.+|..|.|
T Consensus        99 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t  176 (228)
T 2dzn_A           99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS--VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT  176 (228)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCC
T ss_pred             ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCC
Confidence            3566788899999999999999999999999988  88889999999999999999999999996533889999999999


Q ss_pred             HHHHHHHcCCHHHHHHHH-HhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           86 PLHCAARAGKLNTATVLV-DFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |||+|+..|+.+++++|+ +.|     ++++      .+|..|.||+++|+..   +++++|.
T Consensus       177 ~L~~A~~~~~~~~v~~Ll~~~g-----a~~~------~~~~~g~t~l~~A~~~---~~~~~l~  225 (228)
T 2dzn_A          177 PLFHALAEGHGDAAVLLVEKYG-----AEYD------LVDNKGAKAEDVALNE---QVKKFFL  225 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC-----CCSC------CBCTTSCBGGGGCSST---THHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhcC-----CCCC------ccCCCCCcHHHHHHHH---HHHHHHH
Confidence            999999999999999999 777     7777      8999999999999655   5566554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=6.7e-28  Score=168.72  Aligned_cols=127  Identities=14%  Similarity=0.126  Sum_probs=119.2

Q ss_pred             cccCCCCCCHHHHHHHhC--CHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcc-----eeccc
Q 041026            8 HLNDTTNKSPLSLAIEME--NTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFF-----INKTN   80 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~   80 (149)
                      +.+|..|.||||+|+..|  +.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++. +.+     ++..|
T Consensus       132 ~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~  208 (364)
T 3ljn_A          132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS--PTAKDKADETPLMRAMEFRNREALDLMMDT-VPSKSSLRLDYAN  208 (364)
T ss_dssp             EEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CSCSSSCCTTCCC
T ss_pred             ccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccccccC
Confidence            347889999999999999  99999999999999  899999999999999999999999999964 666     88999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           81 NQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        81 ~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..|.||||+|+..|+.+++++|+++|     ++++      .+|..|.||||+|+..|+.+++++|.+
T Consensus       209 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-----ad~~------~~d~~g~tpL~~A~~~g~~~~v~~Ll~  265 (364)
T 3ljn_A          209 KQGNSHLHWAILINWEDVAMRFVEMG-----IDVN------MEDNEHTVPLYLSVRAAMVLLTKELLQ  265 (364)
T ss_dssp             TTCCCTTHHHHTTTCHHHHHHHHTTT-----CCTT------CCCTTSCCHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCC------CCCCCCCCHHHHHHHhChHHHHHHHHH
Confidence            99999999999999999999999999     8777      899999999999999999999999874

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.4e-28  Score=165.15  Aligned_cols=124  Identities=23%  Similarity=0.160  Sum_probs=114.5

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.++.+|.||+++|+..++.+++++|++.+++  ++.++..|.||||+|+..|+.+++++|++ .|++++.++..|.||
T Consensus       112 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~--~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~  188 (269)
T 4b93_B          112 AGARNADQAVPLHLACQQGHFQVVKCLLDSNAK--PNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTA  188 (269)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTCCCHHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBH
T ss_pred             cCccCCCCCCccccccccChHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcH
Confidence            466788999999999999999999999999999  89999999999999999999999999995 689999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRT  146 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  146 (149)
                      ||+|+..|+.+++++|+++|     ++++      .+|..|+||||+|+++++  ++++|
T Consensus       189 Lh~A~~~g~~~~v~~Ll~~G-----ad~~------~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          189 LHEAVIEKHVFVVELLLLHG-----ASVQ------VLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-----CCSC------CCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCC-----CCCC------CcCCCCCCHHHHHHhCCc--HHHHH
Confidence            99999999999999999999     8877      899999999999987664  45544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=3.7e-27  Score=160.36  Aligned_cols=136  Identities=18%  Similarity=0.057  Sum_probs=108.2

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      +.++.+|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .+++++.+|..|.
T Consensus        50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~  126 (285)
T 3d9h_A           50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA--VNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWH  126 (285)
T ss_dssp             CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC--SCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTTCC
T ss_pred             CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCC
Confidence            34567788899999999999999999999998888  88888889999999999999999999995 5888888899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCC--------------------------ccccccccCCCCCHHHHHHHcC
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQPP--------------------------VDLLRMENAMGNTVLREALFML  138 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~--------------------------~~~~~~~~~~g~t~l~~A~~~~  138 (149)
                      ||||+|+..|+.+++++|++.+     ++++.                          ...++.++..|.||||+|+..|
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~  201 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHG-----ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ  201 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT-----CCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTT
T ss_pred             CHHHHHHHcCHHHHHHHHHHCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999999999887     43331                          2233456666666666666666


Q ss_pred             CHHHHHhhhh
Q 041026          139 GRVNVRRTNT  148 (149)
Q Consensus       139 ~~~~~~~L~~  148 (149)
                      +.+++++|.+
T Consensus       202 ~~~~v~~Ll~  211 (285)
T 3d9h_A          202 QRACVKKLLE  211 (285)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            6666666643

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2.4e-27  Score=147.61  Aligned_cols=120  Identities=20%  Similarity=0.122  Sum_probs=111.4

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHc
Q 041026           14 NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARA   93 (149)
Q Consensus        14 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~   93 (149)
                      ..++|+.|++.|+.+++++|++.+++  .+ .+..|.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~--~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAP--FT-TDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC--CC-CCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCC--CC-cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHc
Confidence            45899999999999999999999988  54 58889999999999999999999995 6899999999999999999999


Q ss_pred             CCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           94 GKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        94 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+.+++++|+++|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus        78 ~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~  121 (153)
T 1awc_B           78 GHANIVEVLLKHG-----ADVN------AKDMLKMTALHWATEHNHQEVVELLIK  121 (153)
T ss_dssp             TCHHHHHHHHTTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHcC-----CCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999998     7777      789999999999999999999999865

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.1e-27  Score=150.04  Aligned_cols=124  Identities=20%  Similarity=0.146  Sum_probs=112.2

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAA   91 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~   91 (149)
                      .++.++|+.|+..|+.+++++|++.+.. +++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEN-DLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTS-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcc-cccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCCHHHHHH
Confidence            4688999999999999999999998554 478889999999999999999999999995 58999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           92 RAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        92 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..|+.+++++|++.|     ++++      .++..|.||||+|+..++.+++++|.+
T Consensus        81 ~~~~~~~v~~Ll~~g-----~~~~------~~d~~g~t~L~~A~~~~~~~~v~~Ll~  126 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYK-----ADIN------AVNEHGNVPLHYACFWGQDQVAEDLVA  126 (179)
T ss_dssp             HTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcC-----CCCC------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999     7777      789999999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=1.1e-27  Score=165.94  Aligned_cols=140  Identities=15%  Similarity=0.112  Sum_probs=117.5

Q ss_pred             ccc-cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCc---HHHHHHHHHhCCcceecccCC
Q 041026            7 VHL-NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGH---GEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         7 ~~~-~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      ++. +|.+|.||||+|+..|+.+++++|++.+++  ++.++..|.||||+|+..|+   .++++.|++....+++.+|..
T Consensus       123 vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad--~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~  200 (327)
T 1sw6_A          123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM  200 (327)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence            455 799999999999999999999999999999  89999999999999999998   678888886655789999999


Q ss_pred             CCcHHHHHHH----cCCHHHHHHHHHhhhc---------------CCCCCCCCc-------------------ccccccc
Q 041026           83 GDTPLHCAAR----AGKLNTATVLVDFAKH---------------IPSTSQPPV-------------------DLLRMEN  124 (149)
Q Consensus        83 g~tplh~a~~----~g~~~~v~~Ll~~~~~---------------~~~~~~~~~-------------------~~~~~~~  124 (149)
                      |+||||+|+.    .|+.+++++|++.+..               ..|++++..                   ..++.++
T Consensus       201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d  280 (327)
T 1sw6_A          201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD  280 (327)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCC
T ss_pred             CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCC
Confidence            9999999999    8999999999988521               001222210                   0366889


Q ss_pred             CCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          125 AMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       125 ~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..|+||||+|+..|+.+++++|.+
T Consensus       281 ~~G~TpLh~A~~~g~~~~v~~Ll~  304 (327)
T 1sw6_A          281 SNGDTCLNIAARLGNISIVDALLD  304 (327)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999975

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=6e-27  Score=155.14  Aligned_cols=97  Identities=14%  Similarity=0.068  Sum_probs=51.2

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHH----hCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCC
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILR----SLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      ++.+|.+|.||||+|+..|+.+++++|++    .+.+  ++..+..|.||||+|+..|+.+++++|++ .|.+++.++..
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~   78 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRH   78 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCC
Confidence            34455555555555555555555555554    3333  45555555555555555555555555553 35555555555


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhh
Q 041026           83 GDTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        83 g~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                      |.||||+|+..|+.+++++|++.+
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~  102 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSA  102 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            555555555555555555555554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=3.2e-27  Score=149.54  Aligned_cols=122  Identities=15%  Similarity=0.059  Sum_probs=112.4

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHc
Q 041026           14 NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARA   93 (149)
Q Consensus        14 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~   93 (149)
                      +.+|||.|+..|+.+.++++++.+.. .++..+..|.||||+|+..++.+++++|++ .+++++.++..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN-LVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG-GGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc-cccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhhcccCCCHHHHHHHC
Confidence            57899999999999999999999876 567789999999999999999999999996 4899999999999999999999


Q ss_pred             CCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           94 GKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        94 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+.+++++|++++     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus        80 ~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~  123 (172)
T 3v30_A           80 GYTDIVGLLLERD-----VDIN------IYDWNGGTPLLYAVRGNHVKCVEALLA  123 (172)
T ss_dssp             TCHHHHHHHHTTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcC-----CCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999998     7776      789999999999999999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=1.5e-27  Score=158.04  Aligned_cols=130  Identities=16%  Similarity=0.111  Sum_probs=118.8

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC----CccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccC-
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS----GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNN-   81 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-   81 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.++.    ...+..+..|.||||+|+..++.+++++|++ .|++++.++. 
T Consensus        71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~  149 (236)
T 1ikn_D           71 PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPC  149 (236)
T ss_dssp             SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTT
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC
Confidence            466789999999999999999999999999864    1246678889999999999999999999996 5899999987 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           82 QGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        82 ~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .|.||||+|+..|+.+++++|+++|     ++++      .++..|.||+++|+..++.+++++|.+
T Consensus       150 ~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~tpl~~A~~~~~~~~~~~Ll~  205 (236)
T 1ikn_D          150 NGRTALHLAVDLQNPDLVSLLLKCG-----ADVN------RVTYQGYSPYQLTWGRPSTRIQQQLGQ  205 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTT-----CCSC------CCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC-----CCCC------cccCCCCCHHHHHHccCchHHHHHHHH
Confidence            9999999999999999999999998     8777      789999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.4e-27  Score=149.67  Aligned_cols=122  Identities=21%  Similarity=0.135  Sum_probs=113.1

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAA   91 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~   91 (149)
                      ....||||.|+..|+.+++++|++.+.+  ++..+..|.||||+|+. ++.+++++|++ .+.+++.++..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCC--ccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH
Confidence            4567999999999999999999999988  88899999999999999 99999999995 58999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           92 RAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        92 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ..|+.+++++|++.|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus        79 ~~~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~  124 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQ-----ADVN------IEDNEGNLPLHLAAKEGHLRVVEFLVK  124 (162)
T ss_dssp             HHTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcC-----CCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999998     7777      789999999999999999999999864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=8.6e-27  Score=154.22  Aligned_cols=24  Identities=21%  Similarity=-0.099  Sum_probs=10.4

Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHhh
Q 041026          123 ENAMGNTVLREALFMLGRVNVRRT  146 (149)
Q Consensus       123 ~~~~g~t~l~~A~~~~~~~~~~~L  146 (149)
                      ++..|.||||+|+..++.+++++|
T Consensus       173 ~~~~g~t~L~~A~~~~~~~~v~~L  196 (237)
T 3b7b_A          173 VNIHGDSPLHIAARENRYDCVVLF  196 (237)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHhCCHhHHHHH
Confidence            344444444444444444444443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=1e-26  Score=153.82  Aligned_cols=96  Identities=20%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHH
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      +.+|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .+.+++.++..|.|||
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHH
Confidence            44556666666666666666666666666655  55555666666666666666666666663 3555555666666666


Q ss_pred             HHHHHcCCHHHHHHHHHhh
Q 041026           88 HCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~  106 (149)
                      |+|+..|+.+++++|++.+
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~  100 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNG  100 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHcCCHHHHHHHHhCC
Confidence            6666666666666666554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.95  E-value=6.6e-28  Score=154.37  Aligned_cols=123  Identities=17%  Similarity=0.099  Sum_probs=110.7

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceeccc-CCCCcHHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTN-NQGDTPLHC   89 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~tplh~   89 (149)
                      +.+|.||||+|+..|+.+++++|++ +.+  ++..+..|.||||+|+..|+.+++++|++ .+++++.++ ..|+||||+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD--VDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHH
Confidence            5688999999999999999999999 777  88999999999999999999999999995 689999888 889999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHc----------------CCHHHHHhhhh
Q 041026           90 AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFM----------------LGRVNVRRTNT  148 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~----------------~~~~~~~~L~~  148 (149)
                      |+..|+.+++++|+++|     ++++      .+|..|.||||+|+..                |+.+++++|+.
T Consensus       117 A~~~~~~~~v~~Ll~~g-----a~~~------~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          117 AAGYVRPEVVEALVELG-----ADIE------VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             HHHTTCHHHHHHHHHHT-----CCTT------CCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCcHHHHHHHHHcC-----CCCc------CCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHH
Confidence            99999999999999999     7777      7889999999888775                56677777653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=1.4e-26  Score=153.30  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=58.0

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCC---cceecccCCC
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYP---FFINKTNNQG   83 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~~~~g   83 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++...   .+++..+..|
T Consensus        39 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g  116 (241)
T 1k1a_A           39 LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS--PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG  116 (241)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred             CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCC
Confidence            455566666666666666666666666666665  55555566666666666666666666664321   1444555555


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhh
Q 041026           84 DTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        84 ~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                      .||||+|+..|+.+++++|++.|
T Consensus       117 ~t~L~~A~~~~~~~~~~~Ll~~g  139 (241)
T 1k1a_A          117 LTALHVAVNTECQETVQLLLERG  139 (241)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcC
Confidence            55555555555555555555555

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=5.5e-27  Score=164.88  Aligned_cols=130  Identities=15%  Similarity=0.069  Sum_probs=119.4

Q ss_pred             cccccCCCCCCHHHHHHHhC---CHHHHHHHHHhCCCCcccc--------CCCCCCcHHHHHHHhCcHHHHHHHHHhCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEME---NTDVLEYILRSLPSGISWS--------SGKSPFSLLDVAAKYGHGEISAKIAQYYPF   74 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~   74 (149)
                      .++..|..|.||||+|+..+   +.+++++|++.+++  ++.        .+..|.||||+|+..|+.+++++|++..++
T Consensus       227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~--~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  304 (373)
T 2fo1_E          227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK--VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS  304 (373)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC--SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC
T ss_pred             ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC--cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC
Confidence            45677899999999999988   89999999999988  543        567899999999999999999999987779


Q ss_pred             ceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           75 FINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        75 ~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +++.+|..|.||||+|+..|+.+++++|+++|     ++++      .+|..|.|||++|+..|+.+++++|.+
T Consensus       305 ~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-----ad~~------~~d~~g~t~l~~A~~~g~~~iv~~Ll~  367 (373)
T 2fo1_E          305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-----ASVE------AVDATDHTARQLAQANNHHNIVDIFDR  367 (373)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSS------CCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCcc------CCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999999999999999     8777      789999999999999999999999975

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=157.79  Aligned_cols=124  Identities=16%  Similarity=0.057  Sum_probs=80.0

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHH
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      .+|..|.||||+|+..|+.+++++|++.+++  ++. +..|.||||+|+..|+.+++++|++ .+.+++.+|..|.||||
T Consensus       120 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~  195 (285)
T 3d9h_A          120 GVTADWHTPLFNACVSGSWDCVNLLLQHGAS--VQP-ESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLY  195 (285)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SSC-SCTTSCHHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCHHH
T ss_pred             CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC--CCC-CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHH
Confidence            3444444555555444445555555444444  322 2225555555555555555555553 45666666777777777


Q ss_pred             HHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           89 CAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        89 ~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +|+..|+.+++++|++.|     ++++       .+..|.||||+|+..++.+++++|.+
T Consensus       196 ~A~~~~~~~~v~~Ll~~g-----a~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~  243 (285)
T 3d9h_A          196 LACENQQRACVKKLLESG-----ADVN-------QGKGQDSPLHAVVRTASEELACLLMD  243 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTT-----CCTT-------CCBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHCC-----CCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            777777777777777776     5555       47889999999999999999999875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=6.6e-27  Score=167.08  Aligned_cols=128  Identities=24%  Similarity=0.241  Sum_probs=99.5

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++..|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++. +++++.++..|.|
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t   82 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQT   82 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCC--SCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCC
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCC
Confidence            4577888999999999999999999999999888  788888899999999999999999999964 7888889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |||+|+..|+.+++++|+++|     ++++      ..+..|.||||+|+..|+.+++++|.
T Consensus        83 ~L~~A~~~g~~~~v~~Ll~~g-----a~~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll  133 (437)
T 1n11_A           83 PLHCAARIGHTNMVKLLLENN-----ANPN------LATTAGHTPLHIAAREGHVETVLALL  133 (437)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHT-----CCTT------CCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhCC-----CCCC------CCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999988     6555      55666666666666666666666554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=2.5e-27  Score=158.63  Aligned_cols=125  Identities=18%  Similarity=0.088  Sum_probs=112.5

Q ss_pred             cCCCCCCHHHHHHHh---CCHHHHHHHHHhCCCCccc-----------cCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcc
Q 041026           10 NDTTNKSPLSLAIEM---ENTDVLEYILRSLPSGISW-----------SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFF   75 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~-----------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~   75 (149)
                      +|.+|.||||+|+..   |+.+++++|++.+++  .+           ..+..|.||||+|+..|+.+++++|++ .|++
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~--~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~  115 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD--SGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGAD  115 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH--TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCC
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCc--ccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            789999999999999   999999999999876  33           234679999999999999999999995 5899


Q ss_pred             eecccCC-------------CCcHHHHHHHcCCHHHHHHHHH---hhhcCCCCCCCCccccccccCCCCCHHHHHHH--c
Q 041026           76 INKTNNQ-------------GDTPLHCAARAGKLNTATVLVD---FAKHIPSTSQPPVDLLRMENAMGNTVLREALF--M  137 (149)
Q Consensus        76 ~~~~~~~-------------g~tplh~a~~~g~~~~v~~Ll~---~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~--~  137 (149)
                      ++.++..             |.||||+|+..|+.+++++|++   .|     ++++      .+|..|+||||+|+.  .
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-----a~~n------~~d~~g~TpLh~A~~~~~  184 (256)
T 2etb_A          116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-----ASLE------ATDSLGNTVLHALVMIAD  184 (256)
T ss_dssp             TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-----CCTT------CCCTTSCCHHHHHHHHCC
T ss_pred             CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-----CCcC------ccCCCCCCHHHHHHHccc
Confidence            9988876             9999999999999999999999   77     7777      889999999999999  8


Q ss_pred             CCHH-------HHHhhhh
Q 041026          138 LGRV-------NVRRTNT  148 (149)
Q Consensus       138 ~~~~-------~~~~L~~  148 (149)
                      ++.+       ++++|.+
T Consensus       185 ~~~~~~~~~~~iv~~Ll~  202 (256)
T 2etb_A          185 NSPENSALVIHMYDGLLQ  202 (256)
T ss_dssp             SCHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHH
Confidence            8888       9888864

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=7.5e-27  Score=145.62  Aligned_cols=121  Identities=20%  Similarity=0.167  Sum_probs=111.2

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHc
Q 041026           14 NKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARA   93 (149)
Q Consensus        14 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~   93 (149)
                      +.|+||+|+..|+.+.+++|++. ...+++..+..|.||||+ +..|+.+++++|++ .|++++.+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHc
Confidence            56899999999999999999998 421378889999999999 99999999999995 5899999999999999999999


Q ss_pred             CCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           94 GKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        94 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+.+++++|++.|     ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus        79 ~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~  122 (156)
T 1bd8_A           79 GFLDTLKVLVEHG-----ADVN------VPDGTGALPIHLAVQEGHTAVVSFLAA  122 (156)
T ss_dssp             TCHHHHHHHHHTT-----CCSC------CCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CcHHHHHHHHHcC-----CCCC------CcCCCCCcHHHHHHHhChHHHHHHHHh
Confidence            9999999999998     7777      789999999999999999999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=3e-26  Score=158.92  Aligned_cols=99  Identities=22%  Similarity=0.332  Sum_probs=92.8

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .+++++..|..|.||
T Consensus        51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~g~t~  127 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDLWQFTP  127 (351)
T ss_dssp             CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCH
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCH
Confidence            567789999999999999999999999999998  88999999999999999999999999995 589999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhc
Q 041026           87 LHCAARAGKLNTATVLVDFAKH  108 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~  108 (149)
                      ||+|+..|+.+++++|+++|..
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~  149 (351)
T 3utm_A          128 LHEAASKNRVEVCSLLLSHGAD  149 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999998744

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=1.7e-26  Score=165.02  Aligned_cols=126  Identities=21%  Similarity=0.217  Sum_probs=92.6

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHH
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      +..|..|.||||+|+..|+.+++++|++.+.+  ++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus       272 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~L  348 (437)
T 1n11_A          272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM--VDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPL  348 (437)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc--CCCCCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCHH
Confidence            45566677777777777777777777777766  66667777777777777777777777774 4677777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           88 HCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |+|+..|+.+++++|+++|     ++++      .++..|.||+++|...|+.+++++|+
T Consensus       349 ~~A~~~g~~~iv~~Ll~~g-----a~~~------~~~~~g~t~l~~A~~~g~~~~~~~l~  397 (437)
T 1n11_A          349 HQAAQQGHTDIVTLLLKNG-----ASPN------EVSSDGTTPLAIAKRLGYISVTDVLK  397 (437)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-----CCSC------CCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHCChHHHHHHHHHCc-----CCCC------CCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            7777777777777777777     6665      67777777777777777777777765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=3.3e-26  Score=158.72  Aligned_cols=129  Identities=22%  Similarity=0.189  Sum_probs=101.4

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHh---------------
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQY---------------   71 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~---------------   71 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++.               
T Consensus        84 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l  161 (351)
T 3utm_A           84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC--VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV  161 (351)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcch
Confidence            455677788888888888888888888888777  777777777888887777777777776642               


Q ss_pred             --------------------------------------------------------------------------CCccee
Q 041026           72 --------------------------------------------------------------------------YPFFIN   77 (149)
Q Consensus        72 --------------------------------------------------------------------------~~~~~~   77 (149)
                                                                                                .+++++
T Consensus       162 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~  241 (351)
T 3utm_A          162 DMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN  241 (351)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT
T ss_pred             HHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC
Confidence                                                                                      234455


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           78 KTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        78 ~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .++..|.||||+|+..|+.+++++|+++|     ++++      .+|..|.||||+|+..|+.+++++|.+
T Consensus       242 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~n------~~d~~g~t~L~~A~~~~~~~~v~~Ll~  301 (351)
T 3utm_A          242 EKNKDFMTPLHVAAERAHNDVMEVLHKHG-----AKMN------ALDSLGQTALHRAALAGHLQTCRLLLS  301 (351)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCC------CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            66778888888888888888888888888     7666      788889999999999999999998864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=1.8e-27  Score=158.73  Aligned_cols=123  Identities=17%  Similarity=0.101  Sum_probs=111.2

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceeccc-CCCCcHHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTN-NQGDTPLHC   89 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~tplh~   89 (149)
                      +.+|.||||+|+..|+.+++++|++ +.+  ++..+..|.||||+|+..|+.+++++|++ .|++++.++ ..|.||||+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRD--VDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCC--TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCC--CCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHH
Confidence            3578999999999999999999999 777  88999999999999999999999999995 689999888 889999999


Q ss_pred             HHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHH----------------HcCCHHHHHhhhh
Q 041026           90 AARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREAL----------------FMLGRVNVRRTNT  148 (149)
Q Consensus        90 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~----------------~~~~~~~~~~L~~  148 (149)
                      |+..|+.+++++|+++|     ++++      .++..|.||||+|+                ..|+.+++++|..
T Consensus       118 A~~~g~~~~v~~Ll~~g-----a~~~------~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELG-----ADIE------VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             HHHTTCHHHHHHHHHTT-----CCTT------CCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCC-----CCCC------CCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHH
Confidence            99999999999999999     7777      78888888888887                6688888888864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2.6e-27  Score=157.38  Aligned_cols=123  Identities=18%  Similarity=0.131  Sum_probs=110.9

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAA   91 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~   91 (149)
                      ..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~  111 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAA  111 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTTSS--CCCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHH
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHH
Confidence            5678999999999999999999999988  88899999999999999999999999996 48999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCC-CHHHHH--HHcCCHHHHHhhhh
Q 041026           92 RAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGN-TVLREA--LFMLGRVNVRRTNT  148 (149)
Q Consensus        92 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~L~~  148 (149)
                      ..|+.+++++|+++|     ++++      .++..|. ||+|+|  +..|+.+++++|..
T Consensus       112 ~~~~~~~v~~Ll~~g-----a~~~------~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B          112 SCNNVQVCKFLVESG-----AAVF------AMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             HTTCHHHHHHHHHTT-----CCTT------CCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHcC-----CCcc------eecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            999999999999999     7776      6776666 999999  77899999999864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=2.2e-26  Score=155.38  Aligned_cols=128  Identities=17%  Similarity=0.131  Sum_probs=112.0

Q ss_pred             ccCCCCCCHHHHHHHh---CCHHHHHHHHHhCCCC---------ccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcce
Q 041026            9 LNDTTNKSPLSLAIEM---ENTDVLEYILRSLPSG---------ISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFI   76 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~---------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~   76 (149)
                      ..|..|.||||+|+..   |+.+++++|++.+++.         .....+..|.||||+|+..|+.+++++|++ .|+++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE-NGADV  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH-CCCCc
Confidence            4588999999999987   9999999999987530         022356789999999999999999999995 58999


Q ss_pred             ecccC--------------CCCcHHHHHHHcCCHHHHHHHHH---hhhcCCCCCCCCccccccccCCCCCHHHHHHHcCC
Q 041026           77 NKTNN--------------QGDTPLHCAARAGKLNTATVLVD---FAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG  139 (149)
Q Consensus        77 ~~~~~--------------~g~tplh~a~~~g~~~~v~~Ll~---~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  139 (149)
                      +.++.              .|.||||+|+..|+.+++++|++   .|     ++++      .+|..|+||||+|+..++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-----ad~~------~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-----ADIS------ARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-----CCTT------CCCTTSCCHHHHHHHHCC
T ss_pred             CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-----CCce------eeCCCCCcHHHHHHHccC
Confidence            98887              79999999999999999999999   77     7777      899999999999999988


Q ss_pred             ---------HHHHHhhhh
Q 041026          140 ---------RVNVRRTNT  148 (149)
Q Consensus       140 ---------~~~~~~L~~  148 (149)
                               .+++++|.+
T Consensus       197 ~~~~~~~~~~~~v~~Ll~  214 (273)
T 2pnn_A          197 NTVDNTKFVTSMYNEILI  214 (273)
T ss_dssp             SCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHH
Confidence                     788888764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=2.3e-26  Score=160.95  Aligned_cols=133  Identities=17%  Similarity=0.091  Sum_probs=90.3

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCcccc------------------------------------------
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWS------------------------------------------   44 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~------------------------------------------   44 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.++.  .+.                                          
T Consensus        46 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  123 (364)
T 3ljn_A           46 PTIQNRFGCTALHLACKFGCVDTAKYLASVGEV--HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE  123 (364)
T ss_dssp             TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC--CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence            455667777777777777777777777777654  222                                          


Q ss_pred             ----------CCCCCCcHHHHHHHhC--cHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCC
Q 041026           45 ----------SGKSPFSLLDVAAKYG--HGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPST  112 (149)
Q Consensus        45 ----------~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~  112 (149)
                                .+..|.||||+|+..|  +.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.+     +
T Consensus       124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~  197 (364)
T 3ljn_A          124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTV-----P  197 (364)
T ss_dssp             CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-----S
T ss_pred             HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcc-----c
Confidence                      4445677777777777  67777777744 6777777777777777777777777777777776     3


Q ss_pred             CCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          113 SQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       113 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +.. ...++.++..|.||||+|+..|+.+++++|.+
T Consensus       198 ~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  232 (364)
T 3ljn_A          198 SKS-SLRLDYANKQGNSHLHWAILINWEDVAMRFVE  232 (364)
T ss_dssp             CSS-SCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT
T ss_pred             ccc-cccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            311 11233677778888888888888888887754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=1.5e-25  Score=151.26  Aligned_cols=130  Identities=18%  Similarity=0.075  Sum_probs=115.7

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCA   90 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a   90 (149)
                      +..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .+.+++.++..|.||||+|
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A  112 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEA  112 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTCCBHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCcccCCHHHHH
Confidence            78899999999999999999999999998  88899999999999999999999999995 5899999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcCCCCCCCC----ccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           91 ARAGKLNTATVLVDFAKHIPSTSQPP----VDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        91 ~~~g~~~~v~~Ll~~~~~~~~~~~~~----~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +..|+.+++++|++.+     ++++.    .......+..|.||||+|+..|+.+++++|.+
T Consensus       113 ~~~~~~~~~~~Ll~~g-----~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  169 (285)
T 1wdy_A          113 AVYGKVKALKFLYKRG-----ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  169 (285)
T ss_dssp             HHTTCHHHHHHHHHTT-----CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHhC-----CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999     55541    11112227889999999999999999998864

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=2.4e-26  Score=154.13  Aligned_cols=126  Identities=15%  Similarity=0.085  Sum_probs=109.9

Q ss_pred             CCCCCCHHHHHH---HhCCHHHHHHHHHhCCC---------CccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceec
Q 041026           11 DTTNKSPLSLAI---EMENTDVLEYILRSLPS---------GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINK   78 (149)
Q Consensus        11 d~~g~t~l~~a~---~~~~~~~~~~ll~~~~~---------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~   78 (149)
                      |..|.||||+|+   ..|+.+++++|++.+++         ...+..+..|.||||+|+..|+.+++++|++ .|++++.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH-TTCCTTC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcCc
Confidence            477999999999   67999999999998743         1134455689999999999999999999995 6899998


Q ss_pred             cc--------------CCCCcHHHHHHHcCCHHHHHHHHH---hhhcCCCCCCCCccccccccCCCCCHHHHHHHcCC--
Q 041026           79 TN--------------NQGDTPLHCAARAGKLNTATVLVD---FAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLG--  139 (149)
Q Consensus        79 ~~--------------~~g~tplh~a~~~g~~~~v~~Ll~---~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~--  139 (149)
                      ++              ..|.||||+|+..|+.+++++|++   .|     ++++      .+|..|+||||+|+..++  
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-----a~~~------~~d~~g~TpLh~A~~~~~~~  190 (260)
T 3jxi_A          122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ-----ADLR------RQDSRGNTVLHALVAIADNT  190 (260)
T ss_dssp             CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-----CCTT------CCCTTSCCHHHHHHHHCCSS
T ss_pred             cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-----CCCc------ccCCCCCcHHHHHHHhccCc
Confidence            88              689999999999999999999999   77     7777      899999999999999887  


Q ss_pred             -------HHHHHhhhh
Q 041026          140 -------RVNVRRTNT  148 (149)
Q Consensus       140 -------~~~~~~L~~  148 (149)
                             .+++++|.+
T Consensus       191 ~~~~~~~~~~v~~Ll~  206 (260)
T 3jxi_A          191 RENTKFVTKMYDLLLI  206 (260)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHH
Confidence                   688888754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=2.1e-25  Score=150.57  Aligned_cols=123  Identities=17%  Similarity=0.065  Sum_probs=62.2

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCCCcHHHHHHHhCc----HHHHHHHHHhCCcceecccCCCCc
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRS-LPSGISWSSGKSPFSLLDVAAKYGH----GEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      +..|.||||+|+..|+.+++++|++. +.+  ++..+..|.||||+|+..++    .+++++|++ .|++++.+|..|.|
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t  221 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGAD--VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKT  221 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCC--TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCC--CCccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCc
Confidence            33444444444444444444444443 333  44444444445544444444    444444442 34445555555555


Q ss_pred             HHHHHHHcCCHHHHHHHHH-hhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           86 PLHCAARAGKLNTATVLVD-FAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |||+|+..|+.+++++|++ .|     ++++      .++..|.||||+|+..|+.+++++|.
T Consensus       222 ~L~~A~~~~~~~~v~~Ll~~~g-----~~~~------~~~~~g~t~l~~A~~~~~~~i~~~Ll  273 (285)
T 1wdy_A          222 PLILAVEKKHLGLVQRLLEQEH-----IEIN------DTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSS-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhccC-----CCcc------ccCCCCCcHHHHHHHcCcHHHHHHHH
Confidence            5555555555555555555 33     3333      55566666666666666666666554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.4e-26  Score=153.89  Aligned_cols=123  Identities=18%  Similarity=0.051  Sum_probs=83.3

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCA   90 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a   90 (149)
                      +..|.||||.|++.++.+.++.|++.+++  ++. +..+.||||.|+..|+.+++++|++ .+.+++.+|..|.||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~--~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMR--VKF-NPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCC--ccc-CchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHH
Confidence            46799999999999999999999999998  654 4678899999999999999999995 5889999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           91 ARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        91 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +..|+.+++++|+++|     ++++      .+|..|+||||+|+..|+.+++++|.+
T Consensus        78 ~~~g~~~~v~~Ll~~g-----a~~~------~~d~~g~tpL~~A~~~~~~~~v~~Ll~  124 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFG-----VNVN------AADSDGWTPLHCAASCNNVQVCKFLVE  124 (239)
T ss_dssp             HHHTCHHHHHHHHHHT-----CCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcC-----CCCC------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999     8777      789999999999999999999999875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=2.6e-26  Score=156.26  Aligned_cols=128  Identities=13%  Similarity=0.047  Sum_probs=76.2

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCC-CcHHHHHH
Q 041026           13 TNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQG-DTPLHCAA   91 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~tplh~a~   91 (149)
                      +|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++. |++++.++..| .||||+|+
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~  137 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLD--DSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAV  137 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHH
Confidence            466666666666666666666666666  555666666666666666666666666643 56666666666 56666666


Q ss_pred             HcCCHHHHHHHHHhhhcCCCCCCCC--------------------------ccccccccCCCCCH-HHHHHHcCCHHHHH
Q 041026           92 RAGKLNTATVLVDFAKHIPSTSQPP--------------------------VDLLRMENAMGNTV-LREALFMLGRVNVR  144 (149)
Q Consensus        92 ~~g~~~~v~~Ll~~~~~~~~~~~~~--------------------------~~~~~~~~~~g~t~-l~~A~~~~~~~~~~  144 (149)
                      ..|+.+++++|++++     ++...                          ..+++.++..|.|| ||+|+..++.++++
T Consensus       138 ~~~~~~~v~~Ll~~g-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~  212 (285)
T 3kea_A          138 MLNDVSIVSYFLSEI-----PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ  212 (285)
T ss_dssp             HTTCHHHHHHHHTTS-----CTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHhCC-----CccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            666666666666655     22110                          11222556666665 66666666666666


Q ss_pred             hhhh
Q 041026          145 RTNT  148 (149)
Q Consensus       145 ~L~~  148 (149)
                      +|.+
T Consensus       213 ~Ll~  216 (285)
T 3kea_A          213 ALFK  216 (285)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            6643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.94  E-value=2.1e-25  Score=147.34  Aligned_cols=126  Identities=18%  Similarity=0.176  Sum_probs=90.0

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCc-HHHHHHHHHhCCcceecccC-CCCcH
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGH-GEISAKIAQYYPFFINKTNN-QGDTP   86 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~-~g~tp   86 (149)
                      .+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++ .+++++|+ ..+.+++..+. .|.||
T Consensus       104 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~~L~-~~~~~~~~~~~~~g~t~  180 (240)
T 3eu9_A          104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD--VDMMDQNGMTPLMWAAYRTHSVDPTRLLL-TFNVSVNLGDKYHKNTA  180 (240)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHCCSSTTHHHHH-HTTCCTTCCCTTTCCCH
T ss_pred             ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC--ccccCCCCCcHHHHHHHhCChHHHHHHHH-hcCCCcchhhccCCCcH
Confidence            3455566666666666666666666666555  55555566666666664444 45555555 34566666665 78888


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|+++|     ++++      .++..|.||+++|+..|+.+++++|.+
T Consensus       181 L~~A~~~~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~l~~A~~~~~~~~v~~L~~  231 (240)
T 3eu9_A          181 LHWAVLAGNTTVISLLLEAG-----ANVD------AQNIKGESALDLAKQRKNVWMINHLQE  231 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHHT-----CCTT------CBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcC-----CCCC------CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            88888888888888888888     7666      788999999999999999999998875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.94  E-value=6.2e-26  Score=159.12  Aligned_cols=123  Identities=15%  Similarity=0.013  Sum_probs=114.9

Q ss_pred             CCCCCHHHHHHHh-CCHHHHHHHHHhCCCCccccCC--CCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHH
Q 041026           12 TTNKSPLSLAIEM-ENTDVLEYILRSLPSGISWSSG--KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus        12 ~~g~t~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      ..+.++||.|+.. ++.+++++|++.+++  ++..+  ..|.||||+|+..++.+++++|++ .|++++.+|..|.||||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad--vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGAD--VNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLH  273 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCC--TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCC--CCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHH
Confidence            4456799999999 999999999999999  77777  889999999999999999999995 69999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           89 CAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        89 ~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +|+..|+.+++++|+++|     ++++      .+|..|.||||+|+..++.+++++|+.
T Consensus       274 ~A~~~g~~~~v~~LL~~G-----ad~~------~~d~~G~TpL~~A~~~g~~~iv~lLl~  322 (368)
T 3jue_A          274 HATILGHTGLACLFLKRG-----ADLG------ARDSEGRDPLTIAMETANADIVTLLRL  322 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHCc-----CCCC------CcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999     8777      899999999999999999999999975

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=1.5e-25  Score=157.57  Aligned_cols=133  Identities=20%  Similarity=0.142  Sum_probs=113.5

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCC---cceecccCCC
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYP---FFINKTNNQG   83 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~~~~g   83 (149)
                      ++.+|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .+   .+++..|..|
T Consensus       159 vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~d~~g  235 (373)
T 2fo1_E          159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD--PTIYNKSERSALHQAAANRDFGMMVYMLN-STKLKGDIEELDRNG  235 (373)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTCCCHHHHHHHTTCHHHHHHHTT-SHHHHHTTSCCCTTS
T ss_pred             CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC--CcccCCCCCCHHHHHHHCCCHHHHHHHHh-cCccccChhhcCCCC
Confidence            577899999999999999999999999999999  88999999999999999999999999995 34   6888999999


Q ss_pred             CcHHHHHHHcC---CHHHHHHHHHhhhcCCCCCCCC--ccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           84 DTPLHCAARAG---KLNTATVLVDFAKHIPSTSQPP--VDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        84 ~tplh~a~~~g---~~~~v~~Ll~~~~~~~~~~~~~--~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      .||||+|+..+   +.+++++|++.|     ++++.  ....+.++..|.||||+|+..|+.+++++|.
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g-----~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  299 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKG-----AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV  299 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHT-----CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCC-----CCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999998   889999999999     55441  0112235667778888888888888887775

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=3.9e-28  Score=160.63  Aligned_cols=137  Identities=18%  Similarity=0.096  Sum_probs=117.6

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceeccc-CCCC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTN-NQGD   84 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~   84 (149)
                      .++.+|.+|.||||+|+..|+.+++++|++.+++  ++..+..|+||||+|+..|+.+++++|++ .|++++..+ ..|.
T Consensus        46 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~  122 (229)
T 2vge_A           46 DPSQPNEEGITALHNAICGANYSIVDFLITAGAN--VNSPDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFATTLSDGA  122 (229)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCSSTTC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCC
Confidence            3567899999999999999999999999999999  99999999999999999999999999995 689999886 6999


Q ss_pred             cHHHHH--HHcCCHHHHHHHHHhhhcCCCCCCCC---------------------ccccccccCCCCCHHHHHHHcCCHH
Q 041026           85 TPLHCA--ARAGKLNTATVLVDFAKHIPSTSQPP---------------------VDLLRMENAMGNTVLREALFMLGRV  141 (149)
Q Consensus        85 tplh~a--~~~g~~~~v~~Ll~~~~~~~~~~~~~---------------------~~~~~~~~~~g~t~l~~A~~~~~~~  141 (149)
                      ||||+|  +..|+.+++++|++.|...+..+...                     ...++.+|..|.||||+|+..|+.+
T Consensus       123 tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~  202 (229)
T 2vge_A          123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEG  202 (229)
T ss_dssp             CTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred             CHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcc
Confidence            999999  99999999999999985532111000                     1225678889999999999999988


Q ss_pred             HHHh
Q 041026          142 NVRR  145 (149)
Q Consensus       142 ~~~~  145 (149)
                      +++.
T Consensus       203 ~v~~  206 (229)
T 2vge_A          203 YVPR  206 (229)
T ss_dssp             EEEG
T ss_pred             eeeh
Confidence            8764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.93  E-value=3e-25  Score=127.34  Aligned_cols=91  Identities=27%  Similarity=0.404  Sum_probs=86.2

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHH
Q 041026           13 TNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAAR   92 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~   92 (149)
                      +|.||||+|+..|+.+++++|++.+++  ++.++..|+||||+|+..++.+++++|++ .|++++.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHH
Confidence            589999999999999999999999999  89999999999999999999999999995 689999999999999999999


Q ss_pred             cCCHHHHHHHHHhh
Q 041026           93 AGKLNTATVLVDFA  106 (149)
Q Consensus        93 ~g~~~~v~~Ll~~~  106 (149)
                      .|+.+++++|+++|
T Consensus        78 ~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           78 NGHLEVVKLLLEAG   91 (93)
T ss_dssp             TTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcC
Confidence            99999999999988

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=6.7e-26  Score=154.53  Aligned_cols=123  Identities=19%  Similarity=0.121  Sum_probs=114.8

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHH
Q 041026           11 DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCA   90 (149)
Q Consensus        11 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a   90 (149)
                      +..|.||||.||..|+.+++++|++.+++  ++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAA  113 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHH
Confidence            45678999999999999999999999998  88899999999999999999999999995 6899999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           91 ARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        91 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      +..|+.+++++|+++|     ++++      ..+..|.||||+|+..++.++++.+.
T Consensus       114 ~~~g~~~~v~~Ll~~g-----~~~~------~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B          114 ASCGYLDIAEYLISQG-----AHVG------AVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             HHHTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCC-----CCCC------CcCCCCCCHHHHHHhcchHHHHHHHH
Confidence            9999999999999999     7776      78999999999999999999988654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=4.1e-25  Score=151.46  Aligned_cols=121  Identities=17%  Similarity=0.014  Sum_probs=111.8

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCCCcccc------CCCCCCcHHHHHHHh---CcHHHHHHHHHhCCcceecccCCCC
Q 041026           14 NKSPLSLAIEMENTDVLEYILRSLPSGISWS------SGKSPFSLLDVAAKY---GHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus        14 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      ..++|+.|+..|+.+.++.|+..+++  ++.      .+..|.||||+|+..   ++.+++++|++. |++++.+|..|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d--~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQD--FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCC--TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCc--ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCC
Confidence            45679999999999999999999988  666      588999999999997   899999999965 899999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||||+|+..|+.+++++|+++|     ++++      .+|..|.|||++|+..++.+++++|.+
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~g-----ad~~------~~d~~G~TpL~~A~~~~~~~iv~~Ll~  280 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGR-----ALVG------TVNEAGETALDIARKKHHKECEELLEQ  280 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-----CCCS------CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-----CCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999     8777      899999999999999999999999875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.93  E-value=8.2e-25  Score=151.67  Aligned_cols=128  Identities=16%  Similarity=0.056  Sum_probs=96.5

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCCCcHHHHHHHhCc----HHHHHHHHHhCCcceecccCC
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRS-LPSGISWSSGKSPFSLLDVAAKYGH----GEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      ...+..|.||||+|+..|+.+++++|++. +++  ++..+..|.++++.++..+.    ..++++|++ .|++++.+|..
T Consensus       162 ~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad--~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~  238 (337)
T 4g8k_A          162 ERLRKGGATALMDAAEKGHVEVLKILLDEMGAD--VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGER  238 (337)
T ss_dssp             --CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGG
T ss_pred             ccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC--cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCC
Confidence            44567899999999999999999999965 666  77777778888877665543    346677774 57778888888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           83 GDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        83 g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |.||||+|+..|+.+++++|++..    |++++      .+|..|+||||+|+..|+.+++++|.+
T Consensus       239 g~t~L~~a~~~~~~~~v~~Ll~~~----~~~vn------~~d~~G~TpL~~A~~~g~~~iv~~Ll~  294 (337)
T 4g8k_A          239 GKTPLILAVEKKHLGLVQRLLEQE----HIEIN------DTDSDGKTALLLAVELKLKKIAELLCK  294 (337)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHTST----TCCTT------CBCTTSCBHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCHHHHHHHhhhhHHHHHHHHhc----CCccc------CcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            888888888888888888877653    25555      677788888888888888888887764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=9.9e-25  Score=144.08  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=66.3

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceec-ccCCCCcHHH
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINK-TNNQGDTPLH   88 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~tplh   88 (149)
                      .|..|.++|+.|+..|+.+++++|++.+.+  ++..+..|.||||+|+..|+.+++++|++. +.+++. .+..|.||||
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhH
Confidence            345555555555555555555555555555  555555555555555555555555555532 333332 2233555555


Q ss_pred             HHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           89 CAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        89 ~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      +|+..|+.+++++|++.|     ++++      .++..|.||||+|+..|+.+++++|.
T Consensus        82 ~A~~~~~~~~v~~Ll~~g-----~~~~------~~~~~g~t~l~~A~~~~~~~~~~~Ll  129 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYG-----ADPS------LIDGEGCSCIHLAAQFGHTSIVAYLI  129 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcC-----CCCc------ccCCCCCCHHHHHHHcCHHHHHHHHH
Confidence            555555555555555555     4443      44555555555555555555555543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=6.2e-25  Score=149.05  Aligned_cols=122  Identities=16%  Similarity=0.035  Sum_probs=111.1

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCCc----cccCCCCCCcHHHHHHHh---CcHHHHHHHHHhCCcceecccCCCCcHH
Q 041026           15 KSPLSLAIEMENTDVLEYILRSLPSGI----SWSSGKSPFSLLDVAAKY---GHGEISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      .++|+.|+..|+.+.+..+++.+.+..    ++..+..|.||||+|+..   ++.+++++|++. |++++.+|..|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHH
Confidence            468999999999999999999998721    334477899999999999   899999999964 899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           88 HCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+|+..|+.+++++|+++|     ++++      .+|..|.||||+|+..|+.+++++|.+
T Consensus       210 h~A~~~g~~~~v~~Ll~~g-----ad~~------~~d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGK-----ASIE------IANESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcC-----CCCC------CccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999     8877      899999999999999999999999875

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.93  E-value=6.4e-25  Score=159.53  Aligned_cols=122  Identities=17%  Similarity=0.017  Sum_probs=112.7

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCCCccccC------CCCCCcHHHHHHH---hCcHHHHHHHHHhCCcceecccCCCC
Q 041026           14 NKSPLSLAIEMENTDVLEYILRSLPSGISWSS------GKSPFSLLDVAAK---YGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus        14 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~------~~~~~~~l~~a~~---~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      ..+.||.|+..|+.+.++.|++.+++  ++..      +..|.||||+|+.   .|+.+++++|++ .|++++.+|..|+
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~~--~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~d~~g~  208 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQD--FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGN  208 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTCC--SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCCCSSSC
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhccc--ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCccCCCCC
Confidence            34679999999999999999999998  6655      7889999999976   899999999996 5899999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhhC
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNTA  149 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~a  149 (149)
                      ||||+|+..|+.+++++|+++|     ++++      .+|..|.||||+|+..|+.+++++|.++
T Consensus       209 TpLh~A~~~g~~~~v~~Ll~~g-----a~~~------~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  262 (497)
T 3lvq_E          209 TALHYAALYNQPDCLKLLLKGR-----ALVG------TVNEAGETALDIARKKHHKECEELLEQA  262 (497)
T ss_dssp             CHHHHHTTTTCHHHHHHHHHTC-----CCCS------CCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHcC-----CCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999999     8887      8999999999999999999999999763

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=2.3e-24  Score=149.38  Aligned_cols=124  Identities=17%  Similarity=0.110  Sum_probs=111.6

Q ss_pred             ccccCCCCCCHHHHHHHhCC----HHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCC
Q 041026            7 VHLNDTTNKSPLSLAIEMEN----TDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      ++.+|..|.|+++.++..+.    ..++++|++.+++  ++.++..|.||||+|+..++.++++.|++..+++++.+|..
T Consensus       195 ~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad--~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~  272 (337)
T 4g8k_A          195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD--VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD  272 (337)
T ss_dssp             TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC--TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT
T ss_pred             cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC
Confidence            56788999999999887644    3578899999999  89999999999999999999999999997778999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           83 GDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        83 g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+||||+|+..|+.+++++|+++|     ++++           ..+||++|+..|+.+++++|.+
T Consensus       273 G~TpL~~A~~~g~~~iv~~Ll~~G-----Ad~n-----------~~~~L~~A~~~~~~~iv~~Ll~  322 (337)
T 4g8k_A          273 GKTALLLAVELKLKKIAELLCKRG-----ASTD-----------CGDLVMTARRNYDHSLVKVLLS  322 (337)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHTTS-----CSST-----------TCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCC-----CCCC-----------CCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999     5554           3469999999999999999975

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.92  E-value=3.2e-25  Score=131.76  Aligned_cols=109  Identities=19%  Similarity=0.193  Sum_probs=99.5

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHH
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      .+|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC--SSCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHH
Confidence            5789999999999999999999999999998  88899999999999999999999999995 58999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHH
Q 041026           89 CAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVL  131 (149)
Q Consensus        89 ~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l  131 (149)
                      +|+..|+.+++++|+++|     ++++      .++..|.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~g-----a~~n------~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKG-----ADVN------ARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTS-----SSHH------HHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcC-----CCCC------cCCccccccc
Confidence            999999999999999999     7666      7888888774

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=4.2e-24  Score=122.49  Aligned_cols=89  Identities=26%  Similarity=0.257  Sum_probs=82.6

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCC
Q 041026           48 SPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMG  127 (149)
Q Consensus        48 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g  127 (149)
                      .|+||||+|+..++.+++++|++ .+++++.+|..|.||||+|+..|+.+++++|++.|     ++++      .+|..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~------~~d~~g   68 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-----ADVN------AKDKNG   68 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTS
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCC------ccCCCC
Confidence            37899999999999999999995 68999999999999999999999999999999999     7777      789999


Q ss_pred             CCHHHHHHHcCCHHHHHhhhh
Q 041026          128 NTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       128 ~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .||||+|+..|+.+++++|.+
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~   89 (93)
T 1n0q_A           69 RTPLHLAARNGHLEVVKLLLE   89 (93)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=2.9e-24  Score=147.22  Aligned_cols=111  Identities=14%  Similarity=0.123  Sum_probs=96.8

Q ss_pred             cCCCCCCHHHHHHHh---CCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026           10 NDTTNKSPLSLAIEM---ENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      .|..|.||||+|+..   ++.+++++|++.+++  ++..+..|+||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad--vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~Tp  262 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGH--LDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETA  262 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCH
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence            588999999999997   899999999999999  89999999999999999999999999995 699999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCH
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGR  140 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~  140 (149)
                      ||+|+..|+.+++++|++.+               . + .|.||||+|+..|+.
T Consensus       263 L~~A~~~~~~~iv~~Ll~~g---------------a-~-~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          263 LDIARKKHHKECEELLEQAQ---------------A-G-TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH---------------H-H-TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHHHhc---------------C-C-CCCChhHHHHhcCCc
Confidence            99999999999999999998               1 1 578999999998874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.2e-24  Score=135.80  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=90.9

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCc-HHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFS-LLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      ++.+|..|.||||+|+ .|+.+++++|++.+++  ++.++..|.| |||+|+..++.+++++|++. |++++.+|..|.|
T Consensus        38 ~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~--~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t  113 (156)
T 1bi7_B           38 PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE--PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRL  113 (156)
T ss_dssp             TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC--CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCC
T ss_pred             CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC--CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHc-CCCCcccCCCCCC
Confidence            5677899999999985 8999999999999998  8999999999 99999999999999999964 8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHH
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLRE  133 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~  133 (149)
                      |||+|+..|+.+++++|+++|     ++++      .++..|.||.+-
T Consensus       114 pl~~A~~~~~~~~v~~Ll~~g-----a~~~------~~~~~g~t~~~~  150 (156)
T 1bi7_B          114 PVDLAEELGHRDVARYLRAAA-----GGTR------GSNHARIDAAEG  150 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHSSCC---------------------------
T ss_pred             HHHHHHHhCHHHHHHHHHHcC-----CCCC------ccCcCcCccccc
Confidence            999999999999999999999     7777      788899998873

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=3e-23  Score=126.74  Aligned_cols=97  Identities=23%  Similarity=0.284  Sum_probs=91.2

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|..|.||||+|+..|+.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+++++.+|..|.||
T Consensus        40 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tp  116 (136)
T 2jab_A           40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD--VNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTA  116 (136)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCH
Confidence            567789999999999999999999999999998  88899999999999999999999999995 589999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhh
Q 041026           87 LHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~  106 (149)
                      ||+|+..|+.+++++|++.|
T Consensus       117 l~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          117 FDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999865

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=1.3e-24  Score=150.49  Aligned_cols=119  Identities=20%  Similarity=0.215  Sum_probs=101.7

Q ss_pred             ccccCCCCCCHHHHHHHhCC---HHHHHHHHHhC-CCCccccCCCCCCcHHHHHHH----hCcHHHHHHHHHhC------
Q 041026            7 VHLNDTTNKSPLSLAIEMEN---TDVLEYILRSL-PSGISWSSGKSPFSLLDVAAK----YGHGEISAKIAQYY------   72 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~---~~~~~~ll~~~-~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~~------   72 (149)
                      ++.+|.+|.||||+|+..|+   .+.++.|++.+ ++  ++..+..|.||||+|+.    .++.+++++|++..      
T Consensus       157 ~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~--~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~  234 (327)
T 1sw6_A          157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC--LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK  234 (327)
T ss_dssp             TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG--GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc--ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhc
Confidence            56788999999999999988   67777777776 44  78889999999999999    89999999998641      


Q ss_pred             -------------Cc-------------------------ceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCC
Q 041026           73 -------------PF-------------------------FINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQ  114 (149)
Q Consensus        73 -------------~~-------------------------~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~  114 (149)
                                   ++                         +++.+|..|+||||+|+..|+.+++++|+++|     +++
T Consensus       235 ~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-----ad~  309 (327)
T 1sw6_A          235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-----ADP  309 (327)
T ss_dssp             GGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-----CCT
T ss_pred             ccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCC
Confidence                         11                         47788899999999999999999999999999     888


Q ss_pred             CCccccccccCCCCCHHHHHHHcC
Q 041026          115 PPVDLLRMENAMGNTVLREALFML  138 (149)
Q Consensus       115 ~~~~~~~~~~~~g~t~l~~A~~~~  138 (149)
                      +      .+|..|+||||+|+..|
T Consensus       310 ~------~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          310 F------IANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             T------CCCTTSCCGGGGTCC--
T ss_pred             c------ccCCCCCCHHHHHHhcC
Confidence            7      89999999999998754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.1e-23  Score=128.65  Aligned_cols=96  Identities=14%  Similarity=0.120  Sum_probs=91.6

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCC-CCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKS-PFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      ++.+|..|.||||+|+. ++.+++++|++.+++  ++..+.. |.||||+|+..++.+++++|++ .+++++.+|..|.|
T Consensus        38 ~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t  113 (136)
T 1d9s_A           38 PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE--PNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRL  113 (136)
T ss_dssp             TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC--SSCCBTTTTBCHHHHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSC
T ss_pred             cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC--CCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCC
Confidence            56788999999999999 999999999999999  8889998 9999999999999999999995 68999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhh
Q 041026           86 PLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~  106 (149)
                      |||+|+..|+.+++++|+++|
T Consensus       114 pl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A          114 PVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999998

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=3.1e-25  Score=155.99  Aligned_cols=130  Identities=15%  Similarity=0.060  Sum_probs=103.1

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCC-ccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcc---eecccC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSG-ISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFF---INKTNN   81 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~   81 (149)
                      .+..++.++.||||+|++.|+.+++++|++.++.. ..+..+..+.||||+|+..|+.+++++|++ .|++   .+..+.
T Consensus        84 ~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i~~~  162 (376)
T 2aja_A           84 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAE  162 (376)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHH
T ss_pred             HHHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccccCCC
Confidence            34456677889999999999999999999998741 112345567889999999999999999995 4643   222222


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCcccccc--ccCCCCCHHHHHH-HcCCHHHHHhhhh
Q 041026           82 QGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRM--ENAMGNTVLREAL-FMLGRVNVRRTNT  148 (149)
Q Consensus        82 ~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~--~~~~g~t~l~~A~-~~~~~~~~~~L~~  148 (149)
                      + .||||+|+..|+.+++++|+++|     ++++      .  .+..|.||||+|+ ..|+.+++++|.+
T Consensus       163 ~-~TpLh~Aa~~G~~eiv~~Ll~~g-----a~~~------~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~  220 (376)
T 2aja_A          163 N-YHAFRLAAENGHLHVLNRLCELA-----PTEA------TAMIQAENYYAFRWAAVGRGHHNVINFLLD  220 (376)
T ss_dssp             H-HHHHHHHHHTTCHHHHHHHHHSC-----GGGH------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             C-CCHHHHHHHCCCHHHHHHHHHcC-----Cccc------hhccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence            3 89999999999999999999998     5443      4  7788999999999 9999999999864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.6e-22  Score=120.47  Aligned_cols=97  Identities=28%  Similarity=0.410  Sum_probs=92.1

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++..|..|.||||+|+..++.+++++|++.+++  ++..+..|.||||+|+..++.+++++|++ .+.+++.+|..|.||
T Consensus        28 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~  104 (126)
T 1n0r_A           28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTP  104 (126)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC--CcccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCH
Confidence            466788999999999999999999999999998  88899999999999999999999999995 589999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhh
Q 041026           87 LHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~  106 (149)
                      ||+|+..|+.+++++|+++|
T Consensus       105 l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A          105 LHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHcCcHHHHHHHHHcC
Confidence            99999999999999999998

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=4e-22  Score=135.24  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             ccccCCCCCCHHHHHHHh---CCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCC
Q 041026            7 VHLNDTTNKSPLSLAIEM---ENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQG   83 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g   83 (149)
                      ++..|..|.||||+|+..   |+.+++++|++.+++  ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus       162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~--in~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g  238 (278)
T 1dcq_A          162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN--LDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESG  238 (278)
T ss_dssp             CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTS
T ss_pred             ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCC
Confidence            666789999999999999   899999999999999  99999999999999999999999999995 699999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhh
Q 041026           84 DTPLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        84 ~tplh~a~~~g~~~~v~~Ll~~~  106 (149)
                      .||||+|+..|+.+++++|+++|
T Consensus       239 ~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          239 ETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999999999

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=5.4e-22  Score=121.18  Aligned_cols=93  Identities=19%  Similarity=0.098  Sum_probs=87.1

Q ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccc
Q 041026           44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRME  123 (149)
Q Consensus        44 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  123 (149)
                      ..+..|.||||+|+..|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|++.+     ++++      .+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~------~~   72 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-----ALVN------TT   72 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTT------CC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----Cccc------Cc
Confidence            578899999999999999999999995 58999999999999999999999999999999998     7776      78


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          124 NAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       124 ~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +..|.||||+|+..++.+++++|.+
T Consensus        73 ~~~g~t~L~~A~~~~~~~~v~~Ll~   97 (137)
T 3c5r_A           73 GYQNDSPLHDAAKNGHVDIVKLLLS   97 (137)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.88  E-value=3.4e-22  Score=117.91  Aligned_cols=92  Identities=20%  Similarity=0.208  Sum_probs=68.9

Q ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccc
Q 041026           44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRME  123 (149)
Q Consensus        44 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  123 (149)
                      ..+..|.|+||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..|+.+++++|+++|     ++++      .+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-----a~~~------~~   86 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-----ADVX------AQ   86 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTT------CC
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCcc------cc
Confidence            445667778888888888888888874 47777777777888888888888888888888777     6665      67


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHhhh
Q 041026          124 NAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus       124 ~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |..|.||||+|+..|+.+++++|+
T Consensus        87 d~~g~tpl~~A~~~~~~~~~~~L~  110 (110)
T 2zgd_A           87 DKFGKTAFDISIDNGNEDLAEILQ  110 (110)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHhC
Confidence            777888888888888888887764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=2.9e-23  Score=133.21  Aligned_cols=119  Identities=8%  Similarity=-0.012  Sum_probs=102.9

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhCCCCccccCC-CCCCcHHHHHHHhCcH----HHHHHHHHhCCcceecccCCCCcHHH
Q 041026           14 NKSPLSLAIEMENTDVLEYILRSLPSGISWSSG-KSPFSLLDVAAKYGHG----EISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus        14 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      +.++|+.|++.|+.+.++.++..+..    ..+ ..|+||||+|+..++.    +++++|++ .|++++.+|..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~----~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE----DKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS----CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc----cccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCCCCCCCcHHH
Confidence            56899999999999999999987654    333 6799999999999875    58999995 69999999999999999


Q ss_pred             HHHHcCC------HHHHHHHHHhhhcCCCCCCCCccccccccCCCC-CHHHHHHHcC-----CHHHHHhhhh
Q 041026           89 CAARAGK------LNTATVLVDFAKHIPSTSQPPVDLLRMENAMGN-TVLREALFML-----GRVNVRRTNT  148 (149)
Q Consensus        89 ~a~~~g~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~L~~  148 (149)
                      +|+..++      .+++++|+++|     ++++      .+|..|. ||||+|+..+     +.+++++|..
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~G-----adin------~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~  141 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKG-----ADIT------ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS  141 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTT-----CCSS------SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCC-----CCCC------ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence            9999987      57899999999     8888      8999999 9999999944     4568887764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.88  E-value=5.2e-22  Score=117.14  Aligned_cols=94  Identities=16%  Similarity=0.125  Sum_probs=84.5

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .....|.+|.|+||+|+..|+.+++++|++.+++  ++.++..|.||||+|+..++.+++++|++ .|++++.+|..|.|
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t   92 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD--VAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKT   92 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCc
Confidence            3456788999999999999999999999999988  88899999999999999999999999995 58999999999999


Q ss_pred             HHHHHHHcCCHHHHHHH
Q 041026           86 PLHCAARAGKLNTATVL  102 (149)
Q Consensus        86 plh~a~~~g~~~~v~~L  102 (149)
                      |||+|+..|+.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999987

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.88  E-value=8.3e-22  Score=133.48  Aligned_cols=99  Identities=22%  Similarity=0.228  Sum_probs=93.2

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      ..+..|..|.||||+|+..|+.+++++|++.+++  ++.+|..|+||||+|+..|+.+++++|++..|++++.+|..|.|
T Consensus       175 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad--~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~T  252 (276)
T 4hbd_A          175 INAKASQAGQTALMLAVSHGRVDVVKALLACEAD--VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGST  252 (276)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCC
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCC
Confidence            3456678899999999999999999999999999  99999999999999999999999999996579999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhh
Q 041026           86 PLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~  106 (149)
                      |||+|+..|+.+++++|+++.
T Consensus       253 pL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          253 ALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999886

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=2.3e-21  Score=116.37  Aligned_cols=91  Identities=21%  Similarity=0.093  Sum_probs=82.8

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccC
Q 041026           46 GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENA  125 (149)
Q Consensus        46 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  125 (149)
                      +..|.+|||+|+..|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|++.|     ++++      .+|.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~------~~d~   71 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-----ADIN------APDK   71 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-----CCTT------CCCT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCC------cCCC
Confidence            4567899999999999999999995 58899999999999999999999999999999998     7777      7899


Q ss_pred             CCCCHHHHHHHcCCHHHHHhhhh
Q 041026          126 MGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       126 ~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .|+||||+|+..++.+++++|.+
T Consensus        72 ~g~tpL~~A~~~~~~~~v~~Ll~   94 (123)
T 3aaa_C           72 HHITPLLSAVYEGHVSCVKLLLS   94 (123)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=9e-22  Score=116.77  Aligned_cols=93  Identities=26%  Similarity=0.211  Sum_probs=86.8

Q ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccc
Q 041026           44 SSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRME  123 (149)
Q Consensus        44 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  123 (149)
                      .+|..|.||||+|+..++.+++++|++ .+++++.+|..|.||||+|+..|+.+++++|++.|     ++++      .+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~------~~   71 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-----ADVN------AR   71 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-----CCTT------CC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-----CCCc------cc
Confidence            467889999999999999999999995 58999999999999999999999999999999998     7776      78


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          124 NAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       124 ~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +..|.|||++|+..++.+++++|.+
T Consensus        72 d~~g~tpl~~A~~~~~~~~~~~Ll~   96 (115)
T 2l6b_A           72 SKDGNTPEHLAKKNGHHEIVKLLDA   96 (115)
T ss_dssp             CTTCCCTTHHHHTTTCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999999999875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=1.2e-23  Score=147.86  Aligned_cols=120  Identities=16%  Similarity=0.141  Sum_probs=101.2

Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCc-cccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceec--ccCCCCc
Q 041026            9 LNDTTNKSPLSLAIEMENTDVLEYILRSLPSGI-SWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINK--TNNQGDT   85 (149)
Q Consensus         9 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t   85 (149)
                      ..+..|.||||+|+..|+.+++++|++.+++.. .+..+.. .||||+|+..|+.+++++|++ .|++++.  .|..|.|
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~-~ga~~~~~~~d~~g~T  200 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE-LAPTEATAMIQAENYY  200 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH-SCGGGHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH-cCCccchhccCCCCCC
Confidence            345567899999999999999999999996411 1122222 899999999999999999995 5888877  8889999


Q ss_pred             HHHHHH-HcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAA-RAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+ ..|+.+++++|++.|               .   .|.||+++|+..|+.+++++|.+
T Consensus       201 pL~~Aa~~~G~~eiv~~Ll~~g---------------a---~~~taL~~Aa~~g~~evv~lL~~  246 (376)
T 2aja_A          201 AFRWAAVGRGHHNVINFLLDCP---------------V---MLAYAEIHEFEYGEKYVNPFIAR  246 (376)
T ss_dssp             HHHHHHSTTCCHHHHHHHTTSH---------------H---HHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhCC---------------C---ccchHHHHHHHCCCHHHHHHHHh
Confidence            999999 999999999999977               1   27899999999999999999864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=7.7e-21  Score=133.33  Aligned_cols=120  Identities=17%  Similarity=0.127  Sum_probs=91.7

Q ss_pred             ccccC--CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            7 VHLND--TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         7 ~~~~d--~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      ++..|  .+|.||||+|+..|+.+++++|++.+++  ++..+..|+||||+|+..++.+++++|++ .|++++.+|..|.
T Consensus       226 vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad--vn~~d~~G~TpLh~A~~~g~~~~v~~LL~-~Gad~~~~d~~G~  302 (368)
T 3jue_A          226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN--VNQADSAGRGPLHHATILGHTGLACLFLK-RGADLGARDSEGR  302 (368)
T ss_dssp             TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSC
T ss_pred             CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCcHHHHHHHHH-CcCCCCCcCCCCC
Confidence            34455  7899999999999999999999999999  89999999999999999999999999995 6999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHc
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFM  137 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  137 (149)
                      ||||+|+..|+.+++++|+..+...  .+.      ...+..+.|+++++...
T Consensus       303 TpL~~A~~~g~~~iv~lLl~~~~~~--~~~------~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          303 DPLTIAMETANADIVTLLRLAKMRE--AEA------AQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHC------------------------------
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCc--ccc------cccCCCCCCHHHHHHHH
Confidence            9999999999999999999988321  111      24566777888776554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.84  E-value=2.6e-21  Score=126.99  Aligned_cols=97  Identities=15%  Similarity=0.026  Sum_probs=86.5

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRS-LPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      ++.+|..|.||||+|+..|+.+++++|++. +++  ++..+..|.||||+|+..|+.+++++|++. |++++.+|..|.|
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~--~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t  175 (222)
T 3ehr_A           99 VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE--LNQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKL  175 (222)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC--CCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTSCC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCC
Confidence            567789999999999999999999999998 888  889999999999999999999999999965 8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhh
Q 041026           86 PLHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~  106 (149)
                      |||+|+..|+.++++.|+..+
T Consensus       176 ~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          176 AFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             HHHHCCSHHHHHHHC------
T ss_pred             HHHHhcchhHHHHHHHHhccc
Confidence            999999999999999999998

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=3e-20  Score=123.78  Aligned_cols=98  Identities=17%  Similarity=0.178  Sum_probs=89.6

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCC-CCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSG-KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      .++.+|..|.||||+|+..|+.+++++|++.+++  ++..+ ..|.||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus        69 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~  145 (244)
T 3ui2_A           69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD--LDHRDMRGGLTALHMAAGYVRPEVVEALVE-LGADIEVEDERGL  145 (244)
T ss_dssp             CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC--TTCCCSSSCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCC
T ss_pred             CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC--CCcCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCC
Confidence            3577889999999999999999999999999999  88777 789999999999999999999995 5999999999999


Q ss_pred             cHHHHHH----------------HcCCHHHHHHHHHhh
Q 041026           85 TPLHCAA----------------RAGKLNTATVLVDFA  106 (149)
Q Consensus        85 tplh~a~----------------~~g~~~~v~~Ll~~~  106 (149)
                      ||||+|+                ..|+.+++++|++.+
T Consensus       146 t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          146 TALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             CHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            9999988                567889999999875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.83  E-value=2.7e-20  Score=118.89  Aligned_cols=87  Identities=16%  Similarity=0.159  Sum_probs=79.8

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCC-CCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSG-KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      .++.+|..|.||||+|+..|+.+++++|++.+++  ++..+ ..|+||||+|+..++.+++++|++. |++++.+|..|.
T Consensus        68 ~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~  144 (183)
T 3deo_A           68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD--LDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGL  144 (183)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSC
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcCCCCCCC
Confidence            3577899999999999999999999999999999  88777 8899999999999999999999964 899999999999


Q ss_pred             cHHHHHHHcCC
Q 041026           85 TPLHCAARAGK   95 (149)
Q Consensus        85 tplh~a~~~g~   95 (149)
                      ||||+|+..++
T Consensus       145 tpl~~A~~~~~  155 (183)
T 3deo_A          145 TALELAREILK  155 (183)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHhcc
Confidence            99999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.004
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-07
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 17  PLSLAIEMENTDVLEYILRSLPSGISW----SSGKSPFSLLDVAAKYGHGEISAKIAQYY 72
           PL +A  M +  +++ +L+    G S        ++P   L +AA+ GH E+ AK     
Sbjct: 3   PLHVASFMGHLPIVKNLLQR---GASPNVSNVKVETP---LHMAARAGHTEV-AKYLLQN 55

Query: 73  PFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI 109
              +N       TPLHCAAR G  N   +L++   + 
Sbjct: 56  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 92

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISA 66
            +L + +  +PL L  +  +  V + +++     +  ++ +  ++ L VA+ YG+     
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGN-IKLV 313

Query: 67  KIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           K    +   +N     G +PLH AA+ G  +  T+L+ 
Sbjct: 314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDF 105
           G SP   L  AA+ GH +I   +        N+ ++ G TPL  A R G ++   VL   
Sbjct: 330 GYSP---LHQAAQQGHTDI-VTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 385

Query: 106 AKHIP 110
                
Sbjct: 386 TDETS 390

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS-GKSPFSLLDVAAKYGHGEIS 65
            H       +PL +A +    +V   +L+   S  + S  G +P   L +AA+ GH E+ 
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP---LHLAAQEGHAEM- 246

Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
             +        N  N  G TPLH  A+ G +  A VL+ 
Sbjct: 247 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 6e-06
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 53  LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           L +A +  H  +  ++ +     IN T++ G T L  A        A +L  
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGIS--WSSGKSPFSLLDVAAKYGHGEI 64
                    + L  A E  + +VL+ +L  + + ++   + G++      +++     E 
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 65  SAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMEN 124
              +   +   +N    +G TPL  A     L     L+          Q  ++ +   +
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL---------EQEHIE-INDTD 250

Query: 125 AMGNTVLREA 134
           + G T L  A
Sbjct: 251 SDGKTALLLA 260

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 9e-06
 Identities = 7/42 (16%), Positives = 13/42 (30%)

Query: 53 LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAG 94
          L  A          ++    P  + + +  G  PLH +    
Sbjct: 4  LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ 45

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 2e-05
 Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 11/133 (8%)

Query: 15  KSPLSLAIEMENTD-VLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEI-------SA 66
           +SP+ L  E   +  + E I R   + I     ++    L   A     E         A
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTV---LHWIASNSSAEKSEDLIVHEA 57

Query: 67  KIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAM 126
           K        +N  +   +TPL  A  A +      L+         ++     L    A 
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 117

Query: 127 GNTVLREALFMLG 139
            +  +   +    
Sbjct: 118 RDFGMMVYMLNST 130

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.5 bits (93), Expect = 2e-05
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISW--SSGKSPFSLLDVAAKYGHGEI 64
                   ++ L  A ++ N  +++Y++    S        GK+P   + +AA+ G  E+
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP---IMLAAQEGRIEV 236

Query: 65  SAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVL 102
                      +   +    T    A      N   + 
Sbjct: 237 -VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 46  GKSPFSLLDVAAKYGHGEISAKIAQY--YPFFINKTNNQGDTPLHCAARAGKLNTATVLV 103
           G +    L +A  + H      +  +     +++  N+ G T LH AA  G+ +T   L 
Sbjct: 9   GDTA---LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 104 DFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT 148
                +    +     L +   +        L      + R  + 
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 6e-04
 Identities = 7/29 (24%), Positives = 8/29 (27%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVLVD 104
                  G TPL  A        A +L  
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 8/59 (13%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREA 134
                  GDT LH A           L+ F            + L ++N +G T L  A
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGF--------SAGHEYLDLQNDLGQTALHLA 52

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSP-FSLLDVAAKYGHGEIS 65
            H     ++    +A     +  L+ +   L S       ++  +    +AA+ GH  + 
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 142

Query: 66  AKIAQYYPFFINKT-NNQGDTPLHCAARAGKLNTATVLVD 104
            ++ +  P  I      +       AA  G L+    L +
Sbjct: 143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 182

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 13/85 (15%), Positives = 20/85 (23%), Gaps = 13/85 (15%)

Query: 51  SLLDVAAKYGHGEISAKIAQY---YPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAK 107
            +  VAA  G                  +     +       AA  G L+    L     
Sbjct: 92  VICFVAAITGCSSA-LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC---- 146

Query: 108 HIPSTSQPPVDLLRMENAMGNTVLR 132
                   P +++ M  A      R
Sbjct: 147 -----ELAPTEIMAMIQAENYHAFR 166

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 7e-05
 Identities = 6/46 (13%), Positives = 16/46 (34%)

Query: 57  AKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVL 102
           A   + +   ++   Y   ++  +    T    +   G  + A +L
Sbjct: 107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 9e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 51 SLLDVAAKYGHGEISAKIAQY---YPFFINKTNNQGDTPLHCAAR 92
          S L +A  +    ++ ++ +       F+N  NN   TPLH A  
Sbjct: 4  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 9e-05
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 59  YGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
            GH  +   + ++    +   N++GDT    A   G+    +++  
Sbjct: 109 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 6   LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEIS 65
           L H+  T+  +  S A +     ++ +I++     I  S      S  +         I 
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ-SGTNEKESKPNDKNGERKDSIL 239

Query: 66  AKIAQYYPF--FINKTNNQGDTPLHCAARAGKLNTATVLVD 104
             +   +     +N  ++ GDT L+ AAR G ++    L+D
Sbjct: 240 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 280

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 16/84 (19%), Positives = 25/84 (29%)

Query: 56  AAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQP 115
            A  G  E   +          +T+    T LH A  AG       L+     +      
Sbjct: 10  LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 69

Query: 116 PVDLLRMENAMGNTVLREALFMLG 139
               L +  + G   + +AL   G
Sbjct: 70  GWSPLHIAASAGRDEIVKALLGKG 93

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 1e-04
 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVLVDFAKHI 109
           +++ + +G TPL  A + G  +   +L     H+
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG---HM 156

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 7   VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPS-GISWSSGKSPFSLLDVAAKYGHGEIS 65
              +  +  + L +A     T+VL+ ++++     I    G +P   L  AA +G  E  
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP---LHAAAHWGKEEA- 247

Query: 66  AKIAQYYPFFINKTNNQGDTPLHCAAR 92
            +I       +   N  G T    A  
Sbjct: 248 CRILVENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.0 bits (84), Expect = 4e-04
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 47  KSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
           KS  + L VAA  G+ E+  K+     + +N  +  G TPLH AA  GK     +LV+
Sbjct: 197 KSGGTALHVAAAKGYTEV-LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 53  LDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLN 97
           L  A+  G   +  +         +  N   DTPL  A     ++
Sbjct: 181 LHSASGRGLLPL-VRTLVRSGADSSLKNCHNDTPLMVARSRRVID 224

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 46 GKSPFSLLDVAAKYGHGEISAKIAQYYPFF---INKTNNQGDTPLHCAAR 92
          G +P   L +A   G+     ++   +      ++  NN   TPLH A  
Sbjct: 3  GDTP---LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (76), Expect = 0.004
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 83  GDTPLHCAARAGKLNTATVLVDF 105
           GDTPLH A   G L     LV+ 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNL 25

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 4/27 (14%), Positives = 9/27 (33%)

Query: 76  INKTNNQGDTPLHCAARAGKLNTATVL 102
              T++    P   A+     +   +L
Sbjct: 182 REITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 13/51 (25%), Positives = 18/51 (35%)

Query: 78  KTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGN 128
             +  G+T LH AAR  + + A  L+D      S        L    A   
Sbjct: 18  TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADA 68

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 15/94 (15%), Positives = 28/94 (29%)

Query: 11  DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQ 70
              +++ L LA+   +   L  +   + +  +        S               K+  
Sbjct: 42  HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 101

Query: 71  YYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD 104
                I   N  G+TPL  A R    +   +L  
Sbjct: 102 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.8
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.79
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.77

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=155.88  Aligned_cols=122  Identities=18%  Similarity=0.093  Sum_probs=112.3

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC-cHHHHHH
Q 041026           13 TNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD-TPLHCAA   91 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-tplh~a~   91 (149)
                      .+.++||+|+..|+.+++++|++.+++  ++.++..|.||+|+| ..|+.+++++|++ .|++++.++..+. ||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad--~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVM-MMGSARVAELLLL-HGAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSS-CTTCHHHHHHHHT-TTCCCCCCCTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc--ccccccccccccccc-ccccccccccccc-ccccccccccccccccccccc
Confidence            357899999999999999999999998  899999999999976 4799999999995 5899999988775 6999999


Q ss_pred             HcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhhC
Q 041026           92 RAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNTA  149 (149)
Q Consensus        92 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~a  149 (149)
                      +.|+.+++++|+++|     ++++      .+|..|+||||+|+..|+.+++++|+.|
T Consensus        78 ~~g~~~~v~~Ll~~g-----a~~~------~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          78 REGFLDTLVVLHRAG-----ARLD------VRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHTCHHHHHHHHHHT-----CCSS------CCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccc-----cccc------cccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999999     7777      8999999999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=8.6e-29  Score=152.58  Aligned_cols=119  Identities=14%  Similarity=0.076  Sum_probs=100.9

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHh-----------------------
Q 041026           15 KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQY-----------------------   71 (149)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-----------------------   71 (149)
                      .|||+.||+.|+.+++++|++.+++  .+ .+..|.||||+|+..++.+++..++..                       
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~--~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP--FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC--CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC--cc-cccCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            3788888888888888888888877  44 577788888888887777776666543                       


Q ss_pred             ---------CCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHH
Q 041026           72 ---------YPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVN  142 (149)
Q Consensus        72 ---------~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  142 (149)
                               .+.+.+.++..|.||||+|+..|+.+++++|++.|     ++++      .+|..|.||||+|+..|+.++
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-----ad~~------~~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-----ADVH------TQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccc-----cCCc------ccCCCCCCHHHHHHHcCCHHH
Confidence                     56777888999999999999999999999999999     8777      789999999999999999999


Q ss_pred             HHhhh
Q 041026          143 VRRTN  147 (149)
Q Consensus       143 ~~~L~  147 (149)
                      +++|+
T Consensus       149 v~lL~  153 (153)
T d1awcb_         149 AEILQ  153 (153)
T ss_dssp             HHHHC
T ss_pred             HHhCc
Confidence            99985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=4.5e-30  Score=152.34  Aligned_cols=106  Identities=18%  Similarity=0.135  Sum_probs=101.0

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcC
Q 041026           15 KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAG   94 (149)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g   94 (149)
                      .|||++|++.|+.+++++|++.+++  ++.++..|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d--~n~~~~~g~t~lh~A~~~~~~~~~~~ll~-~g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC--CCCCSSSSCCTTHHHHHHSTTTHHHHHHH-SSCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc--ccccccccccccccccccccccccccccc-ccceeeecccccccchhhhhhcC
Confidence            4799999999999999999999998  89999999999999999999999999995 68999999999999999999999


Q ss_pred             CHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHH
Q 041026           95 KLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREA  134 (149)
Q Consensus        95 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  134 (149)
                      +.+++++|+++|     ++++      .+|..|.||||+|
T Consensus        80 ~~~~v~~Ll~~G-----ad~~------~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKG-----ADKT------VKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTC-----CCSS------SSSSSTCCCCCTC
T ss_pred             chhhhhhhhccc-----ccce------eeCCCCCCHHHHH
Confidence            999999999999     8777      8999999999988

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-28  Score=157.86  Aligned_cols=127  Identities=21%  Similarity=0.221  Sum_probs=118.4

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|.+|.||||+|+..|+.+++++|++.+.+  ++..+..|.||||+|+..++.+++++|+ ..+.+++.+|..|+||
T Consensus        96 ~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d--~~~~~~~~~t~L~~a~~~~~~~~~~~L~-~~~~~i~~~d~~g~Tp  172 (223)
T d1uoha_          96 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PDAKDHYEATAMHRAAAKGNLKMIHILL-YYKASTNIQDTEGNTP  172 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTCCCH
T ss_pred             eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCccchhhhhcCCcchhhhhc-cccceeeeccCCCCce
Confidence            467899999999999999999999999999988  8889999999999999999999999998 4689999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|++.|     ++++      .+|..|+||||+| ..|+.+++++|.+
T Consensus       173 L~~Aa~~g~~~~v~~LL~~G-----ad~~------~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         173 LHLACDEERVEEAKLLVSQG-----ASIY------IENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-----CCSC------CCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eccccccCcHHHHHHHHHCC-----CCCC------CCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999999     8877      8999999999998 5799999999875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-28  Score=148.36  Aligned_cols=119  Identities=18%  Similarity=0.150  Sum_probs=107.5

Q ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCC
Q 041026           16 SPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGK   95 (149)
Q Consensus        16 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~   95 (149)
                      ++|+.||..|+.+++++|++.+++  ++.+|..|+||||+|+..++.+++++|++ .+++++.+|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d--~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~-~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS--CCCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC--ccccccccccccccccccccccccccccc-cccccccccccCcccccccchhhH
Confidence            678999999999999999999998  89999999999999999999999999996 589999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCcccccccc-CCCCCHHHHH--HHcCCHHHHHhhhh
Q 041026           96 LNTATVLVDFAKHIPSTSQPPVDLLRMEN-AMGNTVLREA--LFMLGRVNVRRTNT  148 (149)
Q Consensus        96 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~L~~  148 (149)
                      .+++++|+++|     ++++      ..+ ..++||++++  +..|+.+++++|..
T Consensus        80 ~~~v~~Ll~~g-----a~v~------~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          80 VQVCKFLVESG-----AAVF------AMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHHTT-----CCTT------CCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHcC-----CCcc------cccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            99999999999     7776      444 4578887765  56789999999975

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.7e-27  Score=153.66  Aligned_cols=141  Identities=21%  Similarity=0.228  Sum_probs=100.3

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCC
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGD   84 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~   84 (149)
                      ..++.+|.+|+||||+|+..|+.+++++++.....  ....+..+.++++.++..++.+++++|++ .+++++.+|..|.
T Consensus        28 ~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~-~~~d~~~~d~~g~  104 (223)
T d1uoha_          28 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGC  104 (223)
T ss_dssp             GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCC
T ss_pred             CcCcCcCCCCCCHHHHHHHhhhhcccccccccccc--cccccccccccccccccccccchhHHHhc-cCceeEeeCCCCC
Confidence            35778999999999999999999999999888876  44445555666666666666666666663 3556666666666


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCC----------------------ccccccccCCCCCHHHHHHHcCCHHH
Q 041026           85 TPLHCAARAGKLNTATVLVDFAKHIPSTSQPP----------------------VDLLRMENAMGNTVLREALFMLGRVN  142 (149)
Q Consensus        85 tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~----------------------~~~~~~~~~~g~t~l~~A~~~~~~~~  142 (149)
                      ||||+|+..|+.+++++|+++|..++..+...                      ..+++.++..|+||||+|+..|+.++
T Consensus       105 tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~  184 (223)
T d1uoha_         105 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE  184 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             chhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHH
Confidence            66666666666666666666652221111100                      33455889999999999999999999


Q ss_pred             HHhhhh
Q 041026          143 VRRTNT  148 (149)
Q Consensus       143 ~~~L~~  148 (149)
                      +++|.+
T Consensus       185 v~~LL~  190 (223)
T d1uoha_         185 AKLLVS  190 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-27  Score=147.57  Aligned_cols=127  Identities=19%  Similarity=0.127  Sum_probs=115.5

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      .++.+|..|.||||+|+ .++.+++++|++.+.+  ++..+..|.+|++.++..++.++++++++ .+.+++.+|..|.|
T Consensus        28 ~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~n~~~~~~~t  103 (156)
T d1bd8a_          28 HPDALNRFGKTALQVMM-FGSTAIALELLKQGAS--PNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGAL  103 (156)
T ss_dssp             CTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCC
T ss_pred             CCCccCCCCCccccccc-cccccccccccccccc--ccccccccccccccccccccccccccccc-cccccccccCCCCe
Confidence            46788999999999886 5889999999999988  88888999999999999999999999995 57889999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|+ .+     ++++      .+|..|+||||+|+..|+.+++++|.+
T Consensus       104 ~L~~A~~~~~~~i~~~L~-~~-----~~~~------~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_         104 PIHLAVQEGHTAVVSFLA-AE-----SDLH------RRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHH-TT-----SCTT------CCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             eecccccccccccccccc-cc-----cccc------ccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999887 45     5555      789999999999999999999999874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.5e-27  Score=156.72  Aligned_cols=130  Identities=18%  Similarity=0.185  Sum_probs=83.7

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCC----------------------------------
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPF----------------------------------   50 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~----------------------------------   50 (149)
                      ..++.+|.+|.||||+|+..|+.+++++|++.+++  ++.++..|.                                  
T Consensus        36 ~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~--i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  113 (255)
T d1oy3d_          36 EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG--VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL  113 (255)
T ss_dssp             GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----
T ss_pred             ccccCcCCCCCCccchHHhhccccccccccccccc--ccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhh
Confidence            45677888888888888888888888888888765  444444444                                  


Q ss_pred             ----------------------------------------------cHHHHHHHhCcHHHHHHHHHhCCccee-cccCCC
Q 041026           51 ----------------------------------------------SLLDVAAKYGHGEISAKIAQYYPFFIN-KTNNQG   83 (149)
Q Consensus        51 ----------------------------------------------~~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~g   83 (149)
                                                                    ||||+|+..++.+++++|++. +.+.+ ..+..|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g  192 (255)
T d1oy3d_         114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCG  192 (255)
T ss_dssp             ------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTC
T ss_pred             hHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcc-cccccccccccc
Confidence                                                          444444444444444444432 22222 234455


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           84 DTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        84 ~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .||||+|++.|+.+++++|+++|     ++++      .+|..|.||||+|+..++.+++++|.+
T Consensus       193 ~TpL~~A~~~~~~~~v~~Ll~~g-----adin------~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         193 RTPLHLAVEAQAASVLELLLKAG-----ADPT------ARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHCC-----CCCC------CCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            56666666666666666666555     5444      677888888888888888888887753

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.9e-27  Score=158.71  Aligned_cols=129  Identities=20%  Similarity=0.171  Sum_probs=111.1

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHH----------------
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQ----------------   70 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~----------------   70 (149)
                      ++.+|.+|.||||+|+..|+.+++++|++.|++  ++.++..|.||+++|+..++.+++..+..                
T Consensus        67 vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad--~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  144 (277)
T d2fo1e1          67 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD--PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM  144 (277)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred             ccccCCCCCeeeccccccccccccccccccccc--cccccccccccccchhhhcchhhhhhhhhcccccccccccccccc
Confidence            578999999999999999999999999999988  77777777777777777666655554432                


Q ss_pred             ----------------------------------------------------------------hCCcceecccCCCCcH
Q 041026           71 ----------------------------------------------------------------YYPFFINKTNNQGDTP   86 (149)
Q Consensus        71 ----------------------------------------------------------------~~~~~~~~~~~~g~tp   86 (149)
                                                                                      ..+.+.+.+|..|+||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tp  224 (277)
T d2fo1e1         145 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP  224 (277)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCH
T ss_pred             hhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCH
Confidence                                                                            2455666788899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|+++|     ++++      .+|..|.||||+|+..|+.+++++|.+
T Consensus       225 L~~A~~~g~~~iv~~Ll~~g-----adin------~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         225 IMLAAQEGRIEVVMYLIQQG-----ASVE------AVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT-----CCSS------CCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCc-----CCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999     8777      899999999999999999999999975

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2.4e-27  Score=152.62  Aligned_cols=126  Identities=21%  Similarity=0.171  Sum_probs=113.6

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCC--------------------------------------------------
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPS--------------------------------------------------   39 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~--------------------------------------------------   39 (149)
                      .|.+|.||||+||..|+.+++++|++.++.                                                  
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            588999999999999999999999998763                                                  


Q ss_pred             ---------------CccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHH
Q 041026           40 ---------------GISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVD  104 (149)
Q Consensus        40 ---------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~  104 (149)
                                     .+++..+..|.|||++++..+..+++..+++ .+.+++..|..|.||||+|+..|+.+++++|++
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~  177 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAAREGSYEASKALLD  177 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecc-ccccccccccccccccchhccccHHHHHHHHHH
Confidence                           1223466778899999999999999999995 578899999999999999999999999999999


Q ss_pred             hhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026          105 FAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      .|     ++++      .+|..|+||||+|++.|+.+++++|+
T Consensus       178 ~g-----ad~n------~~d~~g~Tpl~~A~~~~~~~iv~lL~  209 (209)
T d1ot8a_         178 NF-----ANRE------ITDHMDRLPRDVASERLHHDIVRLLD  209 (209)
T ss_dssp             TT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             CC-----CCCC------CcCCCCCCHHHHHHHcCCHHHHhhcC
Confidence            99     8777      88999999999999999999999984

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.9e-27  Score=156.43  Aligned_cols=140  Identities=21%  Similarity=0.135  Sum_probs=116.3

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCC-ccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSG-ISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ...|++|.||||+||+.|+.+++++|++.+++. .++.++..|.||||+|+..|+.+++++|++ .|++++.+|.+|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccc-ccccccccccccchh
Confidence            456799999999999999999999999998762 356778899999999999999999999995 589999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCC------------------------------------CCccccccccCCCCCH
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQ------------------------------------PPVDLLRMENAMGNTV  130 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~------------------------------------~~~~~~~~~~~~g~t~  130 (149)
                      ||+|+..++.+++++|++..........                                    .....++.++..|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            9999999999999999876533110000                                    0044556678889999


Q ss_pred             HHHHHHcCCHHHHHhhhh
Q 041026          131 LREALFMLGRVNVRRTNT  148 (149)
Q Consensus       131 l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..++.+++++|.+
T Consensus       162 Lh~A~~~~~~~~v~~Ll~  179 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRD  179 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccchhc
Confidence            999999999999988753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.2e-26  Score=143.14  Aligned_cols=119  Identities=17%  Similarity=0.062  Sum_probs=105.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCcccc------CCCCCCcHHHHHHHh---CcHHHHHHHHHhCCcceecccCCCCcHH
Q 041026           17 PLSLAIEMENTDVLEYILRSLPSGISWS------SGKSPFSLLDVAAKY---GHGEISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus        17 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      .|+.|++.++...+..++..+.+  +..      .+..|+||||+|+..   +..+++++|++ .|++++.+|..|+|||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d--~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadin~~d~~g~TpL   85 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVD--LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC--TTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCC--cCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHH-cCCChhhhhhhhcccc
Confidence            45678899999999999998876  332      356789999999975   57899999996 5899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhhC
Q 041026           88 HCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNTA  149 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~a  149 (149)
                      |+|+..|+.+++++|+++|     ++++      .+|..|+||||+|++.|+.+++++|.+|
T Consensus        86 h~A~~~~~~~~v~~Ll~~g-----ad~~------~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGK-----ASIE------IANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccccccC-----cccc------ccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999998     8777      7999999999999999999999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-27  Score=152.87  Aligned_cols=119  Identities=17%  Similarity=0.092  Sum_probs=96.7

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHH----hCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHh-----------------
Q 041026           13 TNKSPLSLAIEMENTDVLEYILR----SLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQY-----------------   71 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-----------------   71 (149)
                      +|.||||+||..|+.++++.|++    .+++  ++.+|..|+||||+|+..|+.+++++|++.                 
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~--in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            57777777777777777776654    4555  667777777777777777777777777754                 


Q ss_pred             --------------------------------------------------------------------------------
Q 041026           72 --------------------------------------------------------------------------------   71 (149)
Q Consensus        72 --------------------------------------------------------------------------------   71 (149)
                                                                                                      
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence                                                                                            


Q ss_pred             ------CCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHH
Q 041026           72 ------YPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVR  144 (149)
Q Consensus        72 ------~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  144 (149)
                            .+..++.+|..|.||||+|+..|+.+++++|+++|     ++++      .+|..|.||||+|++.|+.+++|
T Consensus       160 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-----ad~n------~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         160 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-----ADSS------LKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-----CCTT------CCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCC-----CCCC------CCCCCCCCHHHHHHhCCCccccC
Confidence                  45666778889999999999999999999999999     8777      78999999999999999988875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.4e-27  Score=152.18  Aligned_cols=130  Identities=14%  Similarity=0.099  Sum_probs=105.0

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHh--------------
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQY--------------   71 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~--------------   71 (149)
                      .++.+|.+|.||||+|+..|+.+++++|++.+++  ++..+..|.+||++++..++.++++.|++.              
T Consensus        31 ~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d--~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (221)
T d1iknd_          31 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD--PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  108 (221)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             CcccCCCCCCcccccccccccccccccccccccc--ccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence            4678899999999999999999999999999988  777778888888888877777777766642              


Q ss_pred             ------------------------CCcceec-ccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCC
Q 041026           72 ------------------------YPFFINK-TNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAM  126 (149)
Q Consensus        72 ------------------------~~~~~~~-~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  126 (149)
                                              .+..++. .+.+|.||||+|++.|+.+++++|+++|     ++++      .+|..
T Consensus       109 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-----ad~~------~~~~~  177 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-----ADVN------RVTYQ  177 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-----CCSC------CCCTT
T ss_pred             cccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcC-----Cccc------ccCCC
Confidence                                    1233333 3356889999999999999999998888     7776      78888


Q ss_pred             CCCHHHHHHHcCCHHHHHhhhh
Q 041026          127 GNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       127 g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+||||+|+..++.+++++|.+
T Consensus       178 G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         178 GYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             CCCGGGGCTTSSCHHHHHHHHT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999888754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.4e-26  Score=157.86  Aligned_cols=128  Identities=20%  Similarity=0.197  Sum_probs=119.5

Q ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            6 LVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         6 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      ..+..|..|.||++.|+..++.+++++|++.+++  ++..+..+.|||+.++..++.++++++++ .|++++.+|..|.|
T Consensus       256 ~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~--~~~~~~~~~t~L~~~~~~~~~~~~~~ll~-~g~~in~~d~~G~T  332 (408)
T d1n11a_         256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM--VDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYS  332 (408)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred             ccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc--cccccccccccchhhcccCcceeeeeecc-ccccccccCCCCCC
Confidence            3456688899999999999999999999999998  88888889999999999999999999995 68999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           86 PLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      |||+|++.|+.+++++|+++|     ++++      .+|..|.||||+|++.|+.+++++|+
T Consensus       333 ~Lh~A~~~g~~~iv~~Ll~~G-----Ad~n------~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         333 PLHQAAQQGHTDIVTLLLKNG-----ASPN------EVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-----CCSC------CCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-----CCCC------CCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999     8887      89999999999999999999999885

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-25  Score=138.15  Aligned_cols=128  Identities=20%  Similarity=0.252  Sum_probs=108.3

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.+|.+|.||||+|+ .++.+++++|++.+++  ++..+..+.++++.++..+..+.+..++ ..+..++..+..|.+|
T Consensus        27 ~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~  102 (156)
T d1ihba_          27 VNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLP  102 (156)
T ss_dssp             TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             cCccCCcccccccccc-cccccccccccccccc--cccccccCcccccccccccccccccccc-cccccccccccccccc
Confidence            4667888888888775 6788888888888887  7778888888888888888888888888 4577788888899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           87 LHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +|+|+..++.+++++|++++.    .+.+      .++..|+||||+|+..++.+++++|.+
T Consensus       103 l~~a~~~~~~~~~~~Ll~~~~----~~~~------~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_         103 LHLAAKEGHLRVVEFLVKHTA----SNVG------HRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSC----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccccccccc----cccc------ccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999881    1333      789999999999999999999999975

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.9e-24  Score=137.24  Aligned_cols=132  Identities=17%  Similarity=0.180  Sum_probs=92.8

Q ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCc-cccCCCCCCcHHHH----------------------------
Q 041026            5 NLVHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGI-SWSSGKSPFSLLDV----------------------------   55 (149)
Q Consensus         5 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~l~~----------------------------   55 (149)
                      ..++.+|.+|.||||+|+..|+.+++++|++.+++.. .+..+..|.+++++                            
T Consensus        25 ~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (229)
T d1ixva_          25 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ  104 (229)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTT
T ss_pred             CcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3577889999999999999999999999999887511 11223334444444                            


Q ss_pred             -------HHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCC
Q 041026           56 -------AAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGN  128 (149)
Q Consensus        56 -------a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~  128 (149)
                             ++..++.+++..|++ .+...+.++..|+||||+|+..|+.+++++|++.+     .     .+++.+|..|+
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-----~-----~~in~~d~~g~  173 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG-----K-----SAVNWQDKQGW  173 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT-----C-----CCSCCCCTTSC
T ss_pred             cccccccccccchhhhhhhhhh-hcccccccCCCCCCccchhhhcccccccccccccc-----c-----ccccccccccC
Confidence                   444444455555552 35556667777888888888888888888888776     1     13346778888


Q ss_pred             CHHHHHHHcCCHHHHHhhh
Q 041026          129 TVLREALFMLGRVNVRRTN  147 (149)
Q Consensus       129 t~l~~A~~~~~~~~~~~L~  147 (149)
                      ||||+|+..|+.+++++|.
T Consensus       174 TpLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         174 TPLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHH
T ss_pred             CchhhhcccccHHHHHHHH
Confidence            8888888888888888765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=6.1e-27  Score=161.63  Aligned_cols=131  Identities=12%  Similarity=0.036  Sum_probs=107.7

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHH---HHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceeccc--C
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEY---ILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTN--N   81 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~---ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--~   81 (149)
                      ++.+|..|.|||++||+.|+.+++++   |++.++.  ++.++..|+||||+|+..|+.+++++|++ .|.+++..+  .
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~--in~~~~~g~taL~~Aa~~G~~~~v~~Ll~-~g~~~~~~~~~~  159 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI--VKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQA  159 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS--CC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc--ccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCcccccccc
Confidence            45678899999999999999987766   6888888  88899999999999999999999999995 578887765  4


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           82 QGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        82 ~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      +|.||||+|+..|+.+++++|++.+     ++..   ..+..+..+.||++.|+..|+.+++++|.+
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~-----~~~~---~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~  218 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLCELA-----PTEA---TAMIQAENYYAFRWAAVGRGHHNVINFLLD  218 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSC-----GGGH---HHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             CCCChhHHHHHHhhHHHHHHHHHcC-----Cccc---ccccccCCCcchhhHHhhcCHHHHHHHHHh
Confidence            5899999999999999999999988     3222   223445567788889999999999999865

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=1.4e-24  Score=144.69  Aligned_cols=139  Identities=13%  Similarity=-0.018  Sum_probs=112.8

Q ss_pred             ccccC-CCCCCHHHHHHHhCCHHHHHHH--------HHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCccee
Q 041026            7 VHLND-TTNKSPLSLAIEMENTDVLEYI--------LRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFIN   77 (149)
Q Consensus         7 ~~~~d-~~g~t~l~~a~~~~~~~~~~~l--------l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~   77 (149)
                      ++..| .+|.||||+||..|+.+++++|        ++.|++  ++.+|..|+||||+|+..|+.+++++|++ .|++++
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad--vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~n  101 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD--VNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPT  101 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC--ccccCCCCCeeeccccccccccccccccc-cccccc
Confidence            34445 4699999999999999988776        556777  88999999999999999999999999995 589999


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCC---CCCCC--------------------------------------
Q 041026           78 KTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPS---TSQPP--------------------------------------  116 (149)
Q Consensus        78 ~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~---~~~~~--------------------------------------  116 (149)
                      .+|..|.|||++|+..++.++++++.........   .+...                                      
T Consensus       102 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d2fo1e1         102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  181 (277)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence            9999999999999999998888877664321000   00000                                      


Q ss_pred             -----------------------------ccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          117 -----------------------------VDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       117 -----------------------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                                                   ....+.++..|.||||+|+..|+.+++++|.+
T Consensus       182 ~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~  242 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ  242 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                         44556688999999999999999999999864

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-23  Score=145.80  Aligned_cols=90  Identities=29%  Similarity=0.383  Sum_probs=83.5

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcC
Q 041026           15 KSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAG   94 (149)
Q Consensus        15 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g   94 (149)
                      .||||.||..|+.+++++|++.|++  ++..|..|+||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~--in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC--SCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHHHHHHHT
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcC
Confidence            4899999999999999999999998  888999999999999999999999999964 8999999999999999999999


Q ss_pred             CHHHHHHHHHhhh
Q 041026           95 KLNTATVLVDFAK  107 (149)
Q Consensus        95 ~~~~v~~Ll~~~~  107 (149)
                      +.+++++|+....
T Consensus        78 ~~~~~~~Ll~~~~   90 (408)
T d1n11a_          78 HTNMVKLLLENNA   90 (408)
T ss_dssp             CHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhhh
Confidence            9999999987763

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.2e-24  Score=145.36  Aligned_cols=139  Identities=14%  Similarity=0.089  Sum_probs=102.2

Q ss_pred             ccc-CCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcH---HHHHHHHHhCCcceecccCCC
Q 041026            8 HLN-DTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHG---EISAKIAQYYPFFINKTNNQG   83 (149)
Q Consensus         8 ~~~-d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~---~~~~~Ll~~~~~~~~~~~~~g   83 (149)
                      +.+ |.+|.||||+||..|+.+++++|++.|++  ++.+|..|+||||.|+..++.   ..+..+++.....+..+|..|
T Consensus       100 n~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad--~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g  177 (301)
T d1sw6a_         100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  177 (301)
T ss_dssp             CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             CcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccccc
Confidence            434 89999999999999999999999999999  899999999999999987752   223334433334567789999


Q ss_pred             CcHHHHHHHcCC----HH--------HHHHHHHhhhcCCCCC-CCC-------------------------ccccccccC
Q 041026           84 DTPLHCAARAGK----LN--------TATVLVDFAKHIPSTS-QPP-------------------------VDLLRMENA  125 (149)
Q Consensus        84 ~tplh~a~~~g~----~~--------~v~~Ll~~~~~~~~~~-~~~-------------------------~~~~~~~~~  125 (149)
                      +||||+++..+.    ..        ++.+++..+....... ...                         ...++.+|.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~  257 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  257 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC
Confidence            999999986544    22        3344444442210000 000                         122577899


Q ss_pred             CCCCHHHHHHHcCCHHHHHhhhh
Q 041026          126 MGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       126 ~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .|+||||+|++.|+.+++++|.+
T Consensus       258 ~G~TpLh~A~~~g~~~iv~~Ll~  280 (301)
T d1sw6a_         258 NGDTCLNIAARLGNISIVDALLD  280 (301)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999975

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.91  E-value=4.8e-23  Score=138.29  Aligned_cols=129  Identities=17%  Similarity=0.149  Sum_probs=85.2

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHh---------------
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQY---------------   71 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~---------------   71 (149)
                      ++.+|.+|.||||+|+..|+.+++++|++.+.+  ....+..+.+||+.++..++.++++.|++.               
T Consensus        66 vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~--~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  143 (291)
T d1s70b_          66 INYANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL  143 (291)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCccCCCCCcHHHHHHhcCCceeeeeecccccc--cccccccccccccccccccccchhhcccccCcccccccccCcccc
Confidence            345566666666666666666666666666555  444455555555555555555555555532               


Q ss_pred             --------------------------------------------CCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhh
Q 041026           72 --------------------------------------------YPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAK  107 (149)
Q Consensus        72 --------------------------------------------~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~  107 (149)
                                                                  ........+..|.||||+|+..|+.+++++|++.| 
T Consensus       144 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-  222 (291)
T d1s70b_         144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-  222 (291)
T ss_dssp             HHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-
T ss_pred             ccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccce-
Confidence                                                        00112234456778888888888888888888777 


Q ss_pred             cCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          108 HIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                          ++++      .++..|.||||+|+..|+.+++++|.+
T Consensus       223 ----~din------~~~~~g~TpL~~A~~~g~~~iv~lLl~  253 (291)
T d1s70b_         223 ----YDVN------IKDYDGWTPLHAAAHWGKEEACRILVE  253 (291)
T ss_dssp             ----CCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ----eccc------ccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence                6665      788889999999999999999998864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-23  Score=129.88  Aligned_cols=117  Identities=22%  Similarity=0.159  Sum_probs=109.0

Q ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCC
Q 041026           16 SPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGK   95 (149)
Q Consensus        16 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~   95 (149)
                      ++||+||..|+.+++++|++.+++  ++..|..|.||||+|+ .++.+++++|++ .+++++.++..+.+|++.++..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d--~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~-~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMK-LGNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCC-SSCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC--cCccCCcccccccccc-cccccccccccc-cccccccccccCcccccccccccc
Confidence            799999999999999999999999  8999999999999875 789999999995 588999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           96 LNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        96 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      .+++++|+..+     .+.+      ..+..|.+|+++|+..++.+++++|.
T Consensus        79 ~~~~~~l~~~~-----~~~~------~~~~~~~~~l~~a~~~~~~~~~~~Ll  119 (156)
T d1ihba_          79 LDTLQTLLEFQ-----ADVN------IEDNEGNLPLHLAAKEGHLRVVEFLV  119 (156)
T ss_dssp             HHHHHHHHHTT-----CCTT------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccc-----cccc------cccccccccccccccccccccccccc
Confidence            99999999988     6555      78899999999999999999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.6e-23  Score=128.10  Aligned_cols=94  Identities=15%  Similarity=0.187  Sum_probs=88.4

Q ss_pred             cCCCCCCHHHHHHHh---CCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026           10 NDTTNKSPLSLAIEM---ENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      .+..|.||||+|++.   ++.+++++|++.+++  ++.++..|+||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad--in~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tp  117 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN--LDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETP  117 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC--hhhhhhhhccccccccccccccccccccc-cCccccccCCCCCCH
Confidence            367899999999975   678999999999999  99999999999999999999999999995 689999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhh
Q 041026           87 LHCAARAGKLNTATVLVDFA  106 (149)
Q Consensus        87 lh~a~~~g~~~~v~~Ll~~~  106 (149)
                      ||+|+..|+.+++++|++.+
T Consensus       118 L~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1         118 LDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhC
Confidence            99999999999999999988

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-24  Score=139.02  Aligned_cols=133  Identities=22%  Similarity=0.107  Sum_probs=104.3

Q ss_pred             CCCCHHHHHHHhCCHH----HHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHH
Q 041026           13 TNKSPLSLAIEMENTD----VLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLH   88 (149)
Q Consensus        13 ~g~t~l~~a~~~~~~~----~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh   88 (149)
                      +|.||||+|+..|+.+    +++++...++.  ++.++..|+||||+|+..++.+++++|++ .|++++.+|..|.|||+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~--in~~d~~g~TpLh~A~~~~~~~iv~~L~~-~g~d~~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC--CCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC--cccCCCCCCcccccccccccccccccccc-ccccccccccccccccc
Confidence            6999999999999864    45556667777  88999999999999999999999999995 68999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhcCCCCCCCC----------------------------cccccc-ccCCCCCHHHHHHHcCC
Q 041026           89 CAARAGKLNTATVLVDFAKHIPSTSQPP----------------------------VDLLRM-ENAMGNTVLREALFMLG  139 (149)
Q Consensus        89 ~a~~~g~~~~v~~Ll~~~~~~~~~~~~~----------------------------~~~~~~-~~~~g~t~l~~A~~~~~  139 (149)
                      +++..++.++++.|++.+..........                            ...++. .+..|.||||+|+..|+
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~  157 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  157 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccccc
Confidence            9999999999999988763321110000                            222222 35679999999999999


Q ss_pred             HHHHHhhhh
Q 041026          140 RVNVRRTNT  148 (149)
Q Consensus       140 ~~~~~~L~~  148 (149)
                      .+++++|.+
T Consensus       158 ~~~v~~Ll~  166 (221)
T d1iknd_         158 PDLVSLLLK  166 (221)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999864

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.1e-23  Score=136.55  Aligned_cols=128  Identities=16%  Similarity=0.048  Sum_probs=110.2

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCCCcHHHHHHHh----CcHHHHHHHHHhCCcceecccCC
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRS-LPSGISWSSGKSPFSLLDVAAKY----GHGEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      ...+..|.||||+|++.|+.+++++|++. +++  ++..+..+.+++..+...    +..+++++|++ .|++++.++..
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~-~ga~~n~~~~~  218 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGAD--VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGER  218 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC--TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTT
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCC--cccccCCCCcccccccccccchHHHHHHHHHHH-CCCCCCccCCC
Confidence            34567899999999999999999999986 455  788888888887776554    34568999995 58999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           83 GDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        83 g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |.||||+|+..|+.+++++|++..    |++++      .+|..|.||||+|++.|+.+++++|.+
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~~----g~din------~~d~~G~TpL~~A~~~~~~eiv~~Ll~  274 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQE----HIEIN------DTDSDGKTALLLAVELKLKKIAELLCK  274 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSS----SCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCccchhhhcCcHHHHHHHHHcC----CCCCc------CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999863    26666      799999999999999999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.7e-23  Score=134.49  Aligned_cols=125  Identities=19%  Similarity=0.121  Sum_probs=111.5

Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHH
Q 041026            8 HLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPL   87 (149)
Q Consensus         8 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tpl   87 (149)
                      ...+..+.++++.++..++.+++++++..+..  .+..+..|+||||+|+..++.++++.|++..+.+++.+|..|+|||
T Consensus        99 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpL  176 (229)
T d1ixva_          99 NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS--VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL  176 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHH
T ss_pred             cccccccccccccccccchhhhhhhhhhhccc--ccccCCCCCCccchhhhcccccccccccccccccccccccccCCch
Confidence            44567789999999999999999999999888  7888999999999999999999999999765678899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHh-hhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026           88 HCAARAGKLNTATVLVDF-AKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus        88 h~a~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      |+|+..|+.+++++|+++ |     ++++      .+|..|+||||+|+   +.+++++|.+
T Consensus       177 h~A~~~~~~~~v~~Ll~~~g-----ad~~------~~d~~g~t~l~~A~---~~~~~~~Ll~  224 (229)
T d1ixva_         177 FHALAEGHGDAAVLLVEKYG-----AEYD------LVDNKGAKAEDVAL---NEQVKKFFLN  224 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC-----CCSC------CCCTTSCCTGGGCS---CHHHHHHHHH
T ss_pred             hhhcccccHHHHHHHHHhcC-----CCCC------CcCCCCCCHHHHHh---hHHHHHHHHH
Confidence            999999999999999986 6     7777      89999999999997   4578888763

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=1.1e-25  Score=155.38  Aligned_cols=98  Identities=17%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccC--CCCCCcHHHHHHHhCcHHHHHHHHHhCCcce---ecccC
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSS--GKSPFSLLDVAAKYGHGEISAKIAQYYPFFI---NKTNN   81 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~---~~~~~   81 (149)
                      ++.+|.+|.||||+||+.|+.+++++|++.+++  ++..  +..|+||||+|+..|+.+++++|++. +...   +..+.
T Consensus       119 in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~--~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~~  195 (346)
T d2ajaa1         119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPT--EIMAMIQAENYHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAE  195 (346)
T ss_dssp             CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT--THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC--ccccccccCCCChhHHHHHHhhHHHHHHHHHc-CCcccccccccC
Confidence            567888999999999999999999999999988  5554  34689999999999999999999964 5433   34456


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhh
Q 041026           82 QGDTPLHCAARAGKLNTATVLVDFAK  107 (149)
Q Consensus        82 ~g~tplh~a~~~g~~~~v~~Ll~~~~  107 (149)
                      ++.||++.|+..|+.+++++|++.|.
T Consensus       196 ~~~t~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         196 NYYAFRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             CCcchhhHHhhcCHHHHHHHHHhCCC
Confidence            67788899999999999999998763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-22  Score=124.65  Aligned_cols=118  Identities=20%  Similarity=0.175  Sum_probs=106.2

Q ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCC
Q 041026           16 SPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGK   95 (149)
Q Consensus        16 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~   95 (149)
                      ..|+.||..|+.+.++.|++.+.. +++..|..|+||||+|+ .++.+++++|++ .+.+++..+..|.+|+++++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~-~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELV-HPDALNRFGKTALQVMM-FGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCC-CTTCCCTTSCCHHHHSC-TTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCC-CCCccCCCCCccccccc-cccccccccccc-cccccccccccccccccccccccc
Confidence            359999999999999999987543 38889999999999986 588999999995 578899999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCccccccccCCCCCHHHHHHHcCCHHHHHhhh
Q 041026           96 LNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTVLREALFMLGRVNVRRTN  147 (149)
Q Consensus        96 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  147 (149)
                      .++++++++++     ++++      .++..|.||||+|+..|+.+++++|.
T Consensus        81 ~~~~~~~l~~~-----~~~n------~~~~~~~t~L~~A~~~~~~~i~~~L~  121 (156)
T d1bd8a_          81 LDTLKVLVEHG-----ADVN------VPDGTGALPIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             HHHHHHHHHTT-----CCSC------CCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccc-----cccc------cccCCCCeeecccccccccccccccc
Confidence            99999999998     7666      78899999999999999999999885

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.9e-22  Score=118.82  Aligned_cols=86  Identities=22%  Similarity=0.110  Sum_probs=80.7

Q ss_pred             cHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCCH
Q 041026           51 SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNTV  130 (149)
Q Consensus        51 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t~  130 (149)
                      ++|+.|+..|+.+++++|++ .|++++.+|.+|+||||+|+..|+.+++++|++.|     ++.+      .+|..|+||
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~-~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-----~~~~------~~d~~g~tp   70 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VNVN------AADSDGWTP   70 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-----CCTT------CCCTTCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-cCCCccccccccccccccccccccccccccccccc-----cccc------cccccCccc
Confidence            57899999999999999995 68999999999999999999999999999999998     7777      789999999


Q ss_pred             HHHHHHcCCHHHHHhhhh
Q 041026          131 LREALFMLGRVNVRRTNT  148 (149)
Q Consensus       131 l~~A~~~~~~~~~~~L~~  148 (149)
                      ||+|+..|+.+++++|.+
T Consensus        71 Lh~A~~~g~~~~v~~Ll~   88 (130)
T d1ycsb1          71 LHCAASCNNVQVCKFLVE   88 (130)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHH
Confidence            999999999999999864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.6e-22  Score=118.47  Aligned_cols=87  Identities=21%  Similarity=0.089  Sum_probs=81.9

Q ss_pred             CcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCCCccccccccCCCCC
Q 041026           50 FSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPSTSQPPVDLLRMENAMGNT  129 (149)
Q Consensus        50 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~t  129 (149)
                      .|||++|+..|+.+++++|++ .|++++.++..|+||||+|+..|+.+++++|++.|     ++++      .+|..|+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~-~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g-----~din------~~d~~g~t   70 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-----ADIN------APDKHHIT   70 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT-TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSS-----CTTT------CCSSSCSC
T ss_pred             ChHHHHHHHCCCHHHHHHHHH-hhhcccccccccccccccccccccccccccccccc-----ceee------eccccccc
Confidence            579999999999999999995 58999999999999999999999999999999999     7777      78999999


Q ss_pred             HHHHHHHcCCHHHHHhhhh
Q 041026          130 VLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       130 ~l~~A~~~~~~~~~~~L~~  148 (149)
                      |||+|+..|+.+++++|.+
T Consensus        71 pLh~A~~~~~~~~v~~Ll~   89 (118)
T d1myoa_          71 PLLSAVYEGHVSCVKLLLS   89 (118)
T ss_dssp             HHHHHHTTTCCHHHHHHHT
T ss_pred             chhhhhhcCchhhhhhhhc
Confidence            9999999999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.86  E-value=4e-21  Score=128.81  Aligned_cols=134  Identities=17%  Similarity=0.086  Sum_probs=113.3

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcHHHHHH
Q 041026           12 TTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTPLHCAA   91 (149)
Q Consensus        12 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~   91 (149)
                      .++.|+|+.||..|+.+++++|++.|++  ++..|..|.||||+|+..|+.+++++|++ .+.+....+..+.|||++++
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gad--vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~-~~~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcHHHHHHhcCCceeeeeecc-cccccccccccccccccccc
Confidence            4566999999999999999999999999  89999999999999999999999999995 57788888899999999999


Q ss_pred             HcCCHHHHHHHHHhhhcCCCCCCCC-------------------------------------------------cccccc
Q 041026           92 RAGKLNTATVLVDFAKHIPSTSQPP-------------------------------------------------VDLLRM  122 (149)
Q Consensus        92 ~~g~~~~v~~Ll~~~~~~~~~~~~~-------------------------------------------------~~~~~~  122 (149)
                      ..++.+++++|++.+......+...                                                 ......
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             cccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence            9999999999999884432222111                                                 222344


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHhhhh
Q 041026          123 ENAMGNTVLREALFMLGRVNVRRTNT  148 (149)
Q Consensus       123 ~~~~g~t~l~~A~~~~~~~~~~~L~~  148 (149)
                      .+..|.|||+.|+..|+.+++++|.+
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~  220 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQ  220 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccCCCCChhhHHHHcCChhhhccccc
Confidence            66788999999999999999998864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.5e-22  Score=119.02  Aligned_cols=94  Identities=15%  Similarity=0.168  Sum_probs=85.8

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCC-cHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCc
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPF-SLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDT   85 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t   85 (149)
                      ++.+|.+|.||+|+| ..|+.+++++|++.+++  ++.++..+. +|||+|+..|+.+++++|++. |++++.+|..|+|
T Consensus        29 ~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~G~T  104 (125)
T d1bi7b_          29 PNAPNSYGRRPIQVM-MMGSARVAELLLLHGAE--PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRL  104 (125)
T ss_dssp             TTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCC--CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCC
T ss_pred             ccccccccccccccc-ccccccccccccccccc--ccccccccccccccccccccccccccccccc-ccccccccCCCCC
Confidence            567889999999976 47999999999999998  888877765 699999999999999999965 8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q 041026           86 PLHCAARAGKLNTATVLVD  104 (149)
Q Consensus        86 plh~a~~~g~~~~v~~Ll~  104 (149)
                      |||+|++.|+.+++++|++
T Consensus       105 ~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         105 PVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHTCHHHHHHHSS
T ss_pred             HHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999985

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=5.3e-20  Score=117.82  Aligned_cols=93  Identities=18%  Similarity=0.159  Sum_probs=87.9

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCCCCcH
Q 041026            7 VHLNDTTNKSPLSLAIEMENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQGDTP   86 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~tp   86 (149)
                      ++.++..|.|||++++..+...+++.++..+.+  ++..+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus       116 ~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~--~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tp  192 (209)
T d1ot8a_         116 INAADNSGKTALHWAAAVNNTEAVNILLMHHAN--RDAQDDKDETPLFLAAREGSYEASKALLD-NFANREITDHMDRLP  192 (209)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             ccccCCCCCCcchhhcccCcceeeeeecccccc--ccccccccccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCH
Confidence            467789999999999999999999999999988  88899999999999999999999999995 689999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 041026           87 LHCAARAGKLNTATVL  102 (149)
Q Consensus        87 lh~a~~~g~~~~v~~L  102 (149)
                      ||+|++.|+.++|++|
T Consensus       193 l~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         193 RDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHhhc
Confidence            9999999999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.4e-19  Score=113.59  Aligned_cols=61  Identities=20%  Similarity=0.115  Sum_probs=56.1

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHH---hCCcceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhc
Q 041026           48 SPFSLLDVAAKYGHGEISAKIAQ---YYPFFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKH  108 (149)
Q Consensus        48 ~~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~  108 (149)
                      .|+||||+|+..|+.+++++|++   ..|++++.+|..|+||||+|+..|+.+++++|++.+..
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~   65 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS   65 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc
Confidence            58999999999999999999885   36889999999999999999999999999999998844

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.4e-20  Score=126.11  Aligned_cols=113  Identities=19%  Similarity=0.214  Sum_probs=84.8

Q ss_pred             ccccCCCCCCHHHHHHHhCCH-------HHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCc----HHH--------HHH
Q 041026            7 VHLNDTTNKSPLSLAIEMENT-------DVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGH----GEI--------SAK   67 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~~~~-------~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~--------~~~   67 (149)
                      ++.+|..|.||||.||..++.       ++++++..   .  ....+..|+||||+++..+.    ...        +.+
T Consensus       133 ~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~--~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~  207 (301)
T d1sw6a_         133 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---C--LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW  207 (301)
T ss_dssp             TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---G--GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---h--hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHH
Confidence            467889999999999987642       33333332   2  56678889999998876543    222        223


Q ss_pred             HHHhCC------------------------------------cceecccCCCCcHHHHHHHcCCHHHHHHHHHhhhcCCC
Q 041026           68 IAQYYP------------------------------------FFINKTNNQGDTPLHCAARAGKLNTATVLVDFAKHIPS  111 (149)
Q Consensus        68 Ll~~~~------------------------------------~~~~~~~~~g~tplh~a~~~g~~~~v~~Ll~~~~~~~~  111 (149)
                      ++....                                    ..+|.+|..|+||||+|++.|+.+++++|+++|     
T Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-----  282 (301)
T d1sw6a_         208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-----  282 (301)
T ss_dssp             HHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-----
T ss_pred             HHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-----
Confidence            332211                                    115778999999999999999999999999999     


Q ss_pred             CCCCCccccccccCCCCCHHHHHH
Q 041026          112 TSQPPVDLLRMENAMGNTVLREAL  135 (149)
Q Consensus       112 ~~~~~~~~~~~~~~~g~t~l~~A~  135 (149)
                      ++++      .+|..|.|||++|+
T Consensus       283 Ad~~------~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         283 ADPF------IANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTT------CCCTTSCCGGGGTC
T ss_pred             CCCC------CCCCCCCCHHHHcC
Confidence            8888      89999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.8e-19  Score=117.59  Aligned_cols=102  Identities=19%  Similarity=0.150  Sum_probs=91.3

Q ss_pred             ccccCCCCCCHHHHHHHh----CCHHHHHHHHHhCCCCccccCCCCCCcHHHHHHHhCcHHHHHHHHHhCCcceecccCC
Q 041026            7 VHLNDTTNKSPLSLAIEM----ENTDVLEYILRSLPSGISWSSGKSPFSLLDVAAKYGHGEISAKIAQYYPFFINKTNNQ   82 (149)
Q Consensus         7 ~~~~d~~g~t~l~~a~~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   82 (149)
                      ++..|..|.++++.+...    +...++++|++.+++  ++.++..|.||||+|+..++.+++++|++..|++++.+|.+
T Consensus       175 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~--~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~  252 (285)
T d1wdya_         175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD--VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD  252 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC--SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTT
T ss_pred             cccccCCCCcccccccccccchHHHHHHHHHHHCCCC--CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCC
Confidence            567778888888776543    344689999999999  88899999999999999999999999998789999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhcCCCCCCC
Q 041026           83 GDTPLHCAARAGKLNTATVLVDFAKHIPSTSQP  115 (149)
Q Consensus        83 g~tplh~a~~~g~~~~v~~Ll~~~~~~~~~~~~  115 (149)
                      |.||||+|++.|+.+++++|+++|     ++++
T Consensus       253 G~TpL~~A~~~~~~eiv~~Ll~~G-----Ad~n  280 (285)
T d1wdya_         253 GKTALLLAVELKLKKIAELLCKRG-----ASTD  280 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHS-----SCSC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCC-----CCCC
Confidence            999999999999999999999999     7776

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=4.4e-18  Score=103.91  Aligned_cols=92  Identities=21%  Similarity=0.211  Sum_probs=77.7

Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHhCCC-------------------------------CccccCCCCCCcHHHHHHH
Q 041026           10 NDTTNKSPLSLAIEMENTDVLEYILRSLPS-------------------------------GISWSSGKSPFSLLDVAAK   58 (149)
Q Consensus        10 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~-------------------------------~~~~~~~~~~~~~l~~a~~   58 (149)
                      .|..|.||||+|+..++.+.+..++.....                               .+.+.++..|+||||+|+.
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~  109 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhh
Confidence            467788888888888877777766555442                               1355678899999999999


Q ss_pred             hCcHHHHHHHHHhCCcceecccCCCCcHHHHHHHcCCHHHHHHH
Q 041026           59 YGHGEISAKIAQYYPFFINKTNNQGDTPLHCAARAGKLNTATVL  102 (149)
Q Consensus        59 ~~~~~~~~~Ll~~~~~~~~~~~~~g~tplh~a~~~g~~~~v~~L  102 (149)
                      .|+.+++++|++ .|++++.+|.+|.||||+|+..|+.+++++|
T Consensus       110 ~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         110 HNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999995 6899999999999999999999999999976