Citrus Sinensis ID: 041032

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MVPGNGQGRLGSGTGRFSWHSQNNQRSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIFVRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAATDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWLGI
ccccccEEEEEEEEEEEEEEEcccccccccEEEEEccccccEEEEcccccccccccccEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEEcccEEcccccEEEEccEEEEEcEEEEcEEEEEEEccEEEEEcccccccEEEEEccccccccccEEEEEccEEEEcccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccEEccccccccccccccccc
cccccccEEEEEEccEEEEEEEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHcEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccc
mvpgngqgrlgsgtgrfswhsqnnqrsmnntmfvgdgidrtivtghrnvpdgsttsspatfgvsgdgfwardmtfentagpqkHEAVALRVSsdlsmfyrcsfkdYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVfqnfdifvrrpmhdqsnmvtaqgrdnpnentgisiegsrirpaadlaatdldgiihpegwiewdgnFALSTLYYAEYLNAglgaatanrvkwpgfhvlnnpqqaapftvtgfiqgdswipatgvpfwlgi
mvpgngqgrlgsgtgrfSWHSQNNQRSMNNTMFVGDGIDRTIVTGHRnvpdgsttsspatfgVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIFVRRPMHDQSNmvtaqgrdnpnenTGISIEGSRIRPAADLAATDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWLGI
MVPGNGQGRLGSGTGRFSWHSQNNQRSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIFVRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAATDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWLGI
*******************************MFVGDGIDRTIVTG***************FGVSGDGFWARDMTFENTAG**KHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIFVRR********************************AADLAATDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWL**
M**GNGQGRLGSGTGRFSWHSQNNQRSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIFVRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAATDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWLGI
**********GSGTGRFSWHSQNNQRSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIFVRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAATDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWLGI
****NGQGRLGSGTGRFSWHSQNNQRSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIFVRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAATDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFW***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVPGNGQGRLGSGTGRFSWHSQNNQRSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIFVRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAATDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWLGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
Q84R10519 Probable pectinesterase/p yes no 0.906 0.468 0.672 1e-102
O04887510 Pectinesterase 2 OS=Citru no no 0.925 0.486 0.529 3e-79
O49298554 Probable pectinesterase/p no no 0.891 0.431 0.537 3e-77
Q8RXK7573 Probable pectinesterase/p no no 0.880 0.411 0.530 5e-77
P83948584 Pectinesterase 3 OS=Citru no no 0.906 0.416 0.530 2e-75
Q9SRX4579 Probable pectinesterase/p no no 0.899 0.416 0.529 3e-75
Q43062522 Pectinesterase/pectineste N/A no 0.876 0.450 0.517 7e-75
O04886584 Pectinesterase 1 OS=Citru no no 0.906 0.416 0.526 9e-75
O22149511 Probable pectinesterase/p no no 0.955 0.500 0.505 5e-74
Q42534587 Pectinesterase 2 OS=Arabi no no 0.906 0.413 0.518 5e-72
>sp|Q84R10|PME36_ARATH Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=2 Back     alignment and function desciption
 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/266 (67%), Positives = 201/266 (75%), Gaps = 23/266 (8%)

Query: 26  RSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHE 85
           R M N M VGDG+DRTIVT +RNVPDGSTT   ATFGVSGDGFWARD+TFENTAGP KH+
Sbjct: 254 RHMKNIMLVGDGMDRTIVTNNRNVPDGSTTYGSATFGVSGDGFWARDITFENTAGPHKHQ 313

Query: 86  AVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIF 145
           AVALRVSSDLS+FYRCSFK YQDTLFT SLRQFYRDC IYGTIDFI GDAAAVFQN DIF
Sbjct: 314 AVALRVSSDLSLFYRCSFKGYQDTLFTHSLRQFYRDCHIYGTIDFIFGDAAAVFQNCDIF 373

Query: 146 VRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAA------------------- 186
           VRRPM  Q NM+TAQGRD+P+ N+GISI+ SRIR A +  A                   
Sbjct: 374 VRRPMDHQGNMITAQGRDDPHTNSGISIQHSRIRAAPEFEAVKGRFKSYLGRPWKKYSRT 433

Query: 187 ----TDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQA 242
               TD+D +I P GW EW G++ALSTLYY E++N G GA T  RV WPGFHVL   ++A
Sbjct: 434 VFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEA 493

Query: 243 APFTVTGFIQGDSWIPATGVPFWLGI 268
           +PFTV+ FIQGDSWIP TGVPF  G+
Sbjct: 494 SPFTVSRFIQGDSWIPITGVPFSAGV 519
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|O49298|PME6_ARATH Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1 Back     alignment and function description
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|Q42534|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
255541232 472 Pectinesterase-2 precursor, putative [Ri 0.899 0.510 0.700 1e-105
297817392 520 pectinesterase family protein [Arabidops 0.906 0.467 0.672 1e-100
30695263 519 putative pectinesterase/pectinesterase i 0.906 0.468 0.672 1e-100
29824409 519 putative pectinesterase [Arabidopsis tha 0.906 0.468 0.669 2e-98
356506381 475 PREDICTED: probable pectinesterase/pecti 0.906 0.511 0.635 4e-97
7329683 496 pectinesterase-like protein [Arabidopsis 0.906 0.489 0.679 2e-95
356571439 468 PREDICTED: probable pectinesterase/pecti 0.899 0.514 0.640 3e-95
296089186 485 unnamed protein product [Vitis vinifera] 0.906 0.501 0.620 1e-93
359489540 615 PREDICTED: probable pectinesterase/pecti 0.906 0.395 0.620 3e-93
147804867 485 hypothetical protein VITISV_005130 [Viti 0.906 0.501 0.627 4e-93
>gi|255541232|ref|XP_002511680.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223548860|gb|EEF50349.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/264 (70%), Positives = 210/264 (79%), Gaps = 23/264 (8%)

Query: 28  MNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHEAV 87
           + + MFVGDGID+TI+TG RNVPDGS+T S ATFGVSGDGFWARD+TFENTAGP KH+AV
Sbjct: 209 IKDVMFVGDGIDKTIITGSRNVPDGSSTFSSATFGVSGDGFWARDITFENTAGPHKHQAV 268

Query: 88  ALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIFVR 147
           ALRVSSDLS+FYRCSFK YQDTLF LSLRQFYRDC IYGTIDFI GDA  VFQN DIFVR
Sbjct: 269 ALRVSSDLSVFYRCSFKAYQDTLFVLSLRQFYRDCHIYGTIDFIFGDAPVVFQNCDIFVR 328

Query: 148 RPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAA--------------------- 186
           RPM  Q+N +TAQGRD+PNENTGISI+ SR+R + D                        
Sbjct: 329 RPMDHQANFITAQGRDDPNENTGISIQRSRVRASPDFMVAKNKIRSFLGRPWKKYSRTVF 388

Query: 187 --TDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAP 244
             TDLDG+I P GW  W G+FALSTL+YAEY+N G GA+T+ RVKWPGFHVL++PQQA+P
Sbjct: 389 MQTDLDGLIDPMGWGAWHGDFALSTLFYAEYMNTGNGASTSRRVKWPGFHVLSSPQQASP 448

Query: 245 FTVTGFIQGDSWIPATGVPFWLGI 268
           FTVT FIQG+SWIPATGVPFW+GI
Sbjct: 449 FTVTRFIQGESWIPATGVPFWVGI 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297817392|ref|XP_002876579.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322417|gb|EFH52838.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30695263|ref|NP_191632.2| putative pectinesterase/pectinesterase inhibitor 36 [Arabidopsis thaliana] gi|332278140|sp|Q84R10.2|PME36_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 36; Includes: RecName: Full=Pectinesterase inhibitor 36; AltName: Full=Pectin methylesterase inhibitor 36; Includes: RecName: Full=Pectinesterase 36; Short=PE 36; AltName: Full=Pectin methylesterase 36; Short=AtPME36; Flags: Precursor gi|332646580|gb|AEE80101.1| putative pectinesterase/pectinesterase inhibitor 36 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|29824409|gb|AAP04164.1| putative pectinesterase [Arabidopsis thaliana] gi|110737057|dbj|BAF00482.1| pectinesterase like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356506381|ref|XP_003521962.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 36-like [Glycine max] Back     alignment and taxonomy information
>gi|7329683|emb|CAB82677.1| pectinesterase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356571439|ref|XP_003553884.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 36-like [Glycine max] Back     alignment and taxonomy information
>gi|296089186|emb|CBI38889.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489540|ref|XP_002274478.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 36 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147804867|emb|CAN75818.1| hypothetical protein VITISV_005130 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2101836519 AT3G60730 [Arabidopsis thalian 0.600 0.310 0.788 6.9e-96
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.585 0.273 0.611 1.2e-73
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 0.604 0.279 0.569 2.5e-73
TAIR|locus:2125949525 PME44 "pectin methylesterase 4 0.578 0.295 0.561 2.6e-72
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.641 0.336 0.547 2.9e-72
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 0.585 0.280 0.579 5.3e-71
TAIR|locus:2201230554 AT1G23200 [Arabidopsis thalian 0.891 0.431 0.545 7.7e-71
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.578 0.294 0.567 6e-70
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.649 0.290 0.517 6.8e-69
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 0.600 0.274 0.583 8.7e-69
TAIR|locus:2101836 AT3G60730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 664 (238.8 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
 Identities = 127/161 (78%), Positives = 138/161 (85%)

Query:    26 RSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHE 85
             R M N M VGDG+DRTIVT +RNVPDGSTT   ATFGVSGDGFWARD+TFENTAGP KH+
Sbjct:   254 RHMKNIMLVGDGMDRTIVTNNRNVPDGSTTYGSATFGVSGDGFWARDITFENTAGPHKHQ 313

Query:    86 AVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIF 145
             AVALRVSSDLS+FYRCSFK YQDTLFT SLRQFYRDC IYGTIDFI GDAAAVFQN DIF
Sbjct:   314 AVALRVSSDLSLFYRCSFKGYQDTLFTHSLRQFYRDCHIYGTIDFIFGDAAAVFQNCDIF 373

Query:   146 VRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAA 186
             VRRPM  Q NM+TAQGRD+P+ N+GISI+ SRIR A +  A
Sbjct:   374 VRRPMDHQGNMITAQGRDDPHTNSGISIQHSRIRAAPEFEA 414
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125949 PME44 "pectin methylesterase 44" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT3G60730
pectinesterase family protein; pectinesterase family protein; FUNCTIONS IN- enzyme inhibitor activity, pectinesterase activity; INVOLVED IN- cell wall modification; LOCATED IN- endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN- flower; CONTAINS InterPro DOMAIN/s- Pectinesterase, active site (InterPro-IPR018040), Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectinesterase, catalytic (InterPro-IPR000070), Pectinesterase inhibitor (InterPro-IPR006501), Pectin lyase fold (InterPro-IPR012334); BEST Arabidopsis thaliana protein match is- pectinesterase family pro [...] (519 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT3G60440
unknown protein; LOCATED IN- chloroplast; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- [...] (291 aa)
      • 0.921
AT1G48660
auxin-responsive GH3 family protein; auxin-responsive GH3 family protein; FUNCTIONS IN- molecul [...] (573 aa)
      • 0.823
sks3
sks3 (SKU5 Similar 3); copper ion binding / oxidoreductase; Encodes a protein with two DUF26 do [...] (550 aa)
      • 0.679
sks15
sks15 (SKU5 Similar 15); copper ion binding / oxidoreductase; SKU5 Similar 15 (sks15); FUNCTION [...] (541 aa)
      • 0.679
sks4
sks4 (SKU5 Similar 4); copper ion binding / oxidoreductase; SKU5 Similar 4 (sks4); FUNCTIONS IN [...] (541 aa)
      • 0.675
sks17
sks17 (SKU5 Similar 17); copper ion binding / oxidoreductase; SKU5 Similar 17 (sks17); FUNCTION [...] (546 aa)
      • 0.657
sks10
sks10 (SKU5 Similar 10); copper ion binding / oxidoreductase; SKU5 Similar 10 (sks10); FUNCTION [...] (547 aa)
      • 0.625
AT3G04170
germin-like protein, putative; germin-like protein, putative; FUNCTIONS IN- manganese ion bindi [...] (227 aa)
   •  • 0.576
AT5G19900
PRLI-interacting factor, putative; PRLI-interacting factor, putative; FUNCTIONS IN- molecular_f [...] (494 aa)
      • 0.547
AT5G13410
immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; immunophilin / FKB [...] (256 aa)
      • 0.547

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-152
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-132
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-116
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-106
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-105
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-103
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-101
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-100
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-100
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 4e-99
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 4e-94
PLN02314586 PLN02314, PLN02314, pectinesterase 2e-93
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 8e-92
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 3e-90
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-89
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-85
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 5e-85
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 2e-81
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 2e-79
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 4e-79
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-70
PLN02197588 PLN02197, PLN02197, pectinesterase 3e-50
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 4e-37
PLN02432293 PLN02432, PLN02432, putative pectinesterase 5e-36
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 9e-34
PLN02671359 PLN02671, PLN02671, pectinesterase 7e-32
PLN02304379 PLN02304, PLN02304, probable pectinesterase 5e-30
PLN02773317 PLN02773, PLN02773, pectinesterase 3e-28
PLN02634359 PLN02634, PLN02634, probable pectinesterase 8e-27
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 2e-26
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-26
PLN02176340 PLN02176, PLN02176, putative pectinesterase 2e-16
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 6e-16
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 3e-10
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information 
 Score =  434 bits (1116), Expect = e-152
 Identities = 182/266 (68%), Positives = 207/266 (77%), Gaps = 23/266 (8%)

Query: 26  RSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHE 85
           R M N MFVGDG+D+TI+T +RNVPDGSTT S ATFGVSGDGFWARD+TFENTAGP KH+
Sbjct: 237 RHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDGFWARDITFENTAGPHKHQ 296

Query: 86  AVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIF 145
           AVALRVSSDLS+FYRCSFK YQDTLF  SLRQFYRDC IYGTIDFI GDAA VFQN DIF
Sbjct: 297 AVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTIDFIFGDAAVVFQNCDIF 356

Query: 146 VRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAA------------------- 186
           VRRPM  Q NM+TAQGRD+P+ENTGISI+ SR+R + +  A                   
Sbjct: 357 VRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPWKKYSRT 416

Query: 187 ----TDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQA 242
               TDLDG+I P GW EW G++ALSTLYY EY+N G GA+T+ RVKWPGFHVL   ++A
Sbjct: 417 VFLKTDLDGLIDPRGWREWSGSYALSTLYYGEYMNTGAGASTSRRVKWPGFHVLRGTEEA 476

Query: 243 APFTVTGFIQGDSWIPATGVPFWLGI 268
           +PFTV+ FIQG+SWIPATGVPF  GI
Sbjct: 477 SPFTVSRFIQGESWIPATGVPFSAGI 502

Length = 502
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02314586 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02773317 pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.27
PLN02480343 Probable pectinesterase 96.47
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.32
PLN02634359 probable pectinesterase 95.94
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.67
PLN02432293 putative pectinesterase 95.35
PLN02304379 probable pectinesterase 95.17
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.13
PLN02665366 pectinesterase family protein 95.11
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.1
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.05
PLN02773317 pectinesterase 94.98
PLN02671359 pectinesterase 94.93
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.84
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.81
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.71
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.7
PLN02497331 probable pectinesterase 94.64
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.64
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.26
PLN02217670 probable pectinesterase/pectinesterase inhibitor 94.21
PLN02916502 pectinesterase family protein 94.19
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 94.19
PLN02197588 pectinesterase 93.97
PLN02301548 pectinesterase/pectinesterase inhibitor 93.66
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.64
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.49
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.38
PLN02176340 putative pectinesterase 93.36
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.31
PLN02682369 pectinesterase family protein 92.74
PLN02314586 pectinesterase 92.69
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 92.53
smart00656190 Amb_all Amb_all domain. 91.42
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 90.91
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 90.82
PRK10531422 acyl-CoA thioesterase; Provisional 90.59
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 89.11
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 89.07
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 88.94
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 88.61
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 88.0
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 81.7
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=1.5e-84  Score=626.25  Aligned_cols=268  Identities=46%  Similarity=0.820  Sum_probs=254.2

Q ss_pred             CCCCCCCcCCC-----------CCCceEEEEEE--------EeeCCCCcEEEEecCCCCeEEEecCCCCCCCCCCCceEE
Q 041032            1 MVPGNGQGRLG-----------SGTGRFSWHSQ--------NNQRSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATF   61 (268)
Q Consensus         1 ~v~~~g~g~~~-----------~~~~~~~I~Ik--------~i~~~k~~i~l~G~~~~~t~I~~~~~~~~g~~t~~saT~   61 (268)
                      ||+.+|.|+|+           .+++|++||||        .||++||||+|+|+|+++|+|+++.++.++.+|+.||||
T Consensus       200 vVa~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv  279 (509)
T PLN02488        200 VVAKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV  279 (509)
T ss_pred             EECCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence            58999999999           56779999999        778899999999999999999999998888899999999


Q ss_pred             EEeCCCEEEEeeEEEecCCCCCCeeEEEEeeCCeeeEEeceeeccCCeEEeCCccEEEEccEEeeeceeEeccceeEEEe
Q 041032           62 GVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQN  141 (268)
Q Consensus        62 ~v~a~~f~a~niti~Nt~g~~~~QAvAl~~~~dr~~f~~c~~~g~QDTL~~~~gr~yf~~c~I~G~vDFIfG~g~a~f~~  141 (268)
                      .|.|++|+|+||||+|++|+.++|||||++.+||++||+|+|+|||||||++.+||||++|||+|+||||||+|+++||+
T Consensus       280 ~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq~  359 (509)
T PLN02488        280 ASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQF  359 (509)
T ss_pred             EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeccCCCCceEEEeCCCCCCCCCeeEEEEcCEEeeCCCC---------C--------------CCccCcccCCCCc
Q 041032          142 FDIFVRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADL---------A--------------ATDLDGIIHPEGW  198 (268)
Q Consensus       142 c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vf~~c~i~~~~~~---------~--------------~~~~~~~I~p~GW  198 (268)
                      |+|+++++..++.++||||+|+++++++||||++|+|++++++         +              +|+|+++|+|+||
T Consensus       360 C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~~I~P~GW  439 (509)
T PLN02488        360 CQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGDLVDPAGW  439 (509)
T ss_pred             cEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCCccEEEEeccCCCeeccccc
Confidence            9999998866778999999999889999999999999998642         1              9999999999999


Q ss_pred             cCCCCCCCCcceEEEEEccccCCCCCCCcccCCcccccCCHhhhcCccccccccCCCCCCCCCCccCCCC
Q 041032          199 IEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWLGI  268 (268)
Q Consensus       199 ~~w~~~~~~~~~~f~Ey~~~GpGa~~s~R~~w~~~~~l~t~~ea~~yt~~~~~~g~~W~p~~~~p~~~~~  268 (268)
                      .+|++....++++|+||+|+||||++++||+|+++++|++++||++||..+||+|++|+|.++|||..||
T Consensus       440 ~~W~~~~~~~t~~yaEY~n~GPGA~~s~RV~W~g~~~l~~~~eA~~ft~~~fi~G~~Wl~~tgvp~~~gl  509 (509)
T PLN02488        440 TPWEGETGLSTLYYGEYQNRGPGAVTSKRVKWTGFRVMTDPKEATKFTVAKLLDGESWLKASGVPYEKGL  509 (509)
T ss_pred             CccCCCCCCCceEEEEecccCCCCCcCCCcccccccccCCHHHHHhhhHHheeCCCCcCCCCCCCcCCCC
Confidence            9999888889999999999999999999999999877756899999999999999999999999999986

>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 4e-70
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 3e-67
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-11
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 2e-11
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-10
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 8e-07
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  261 bits (666), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 135/266 (50%), Positives = 164/266 (61%), Gaps = 23/266 (8%)
Query: 26  RSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHE 85
           +   N MF+GDG   TI+T  +NV DGSTT + AT    G GF ARD+TF+NTAG  KH+
Sbjct: 54  KKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQ 113
Query: 86  AVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIF 145
           AVALRV SDLS FYRC    YQD+L+  S RQF+ +C I GT+DFI G+AA V Q+ DI 
Sbjct: 114 AVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIH 173
Query: 146 VRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADL--------------------- 184
            RRP   Q NMVTAQGR +PN+NTGI I+ SRI   +DL                     
Sbjct: 174 ARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRT 233
Query: 185 --AATDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQA 242
               + +  +I+P GW  WDGNFAL TLYY EY N G GAAT+ RV W GF V+ +  +A
Sbjct: 234 VVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEA 293
Query: 243 APFTVTGFIQGDSWIPATGVPFWLGI 268
             FT   FI G SW+ AT  PF LG+
Sbjct: 294 QGFTPGSFIAGGSWLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-116
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-115
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 2e-77
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 8e-72
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 5e-58
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  333 bits (857), Expect = e-116
 Identities = 135/266 (50%), Positives = 164/266 (61%), Gaps = 23/266 (8%)

Query: 26  RSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHE 85
           +   N MF+GDG   TI+T  +NV DGSTT + AT    G GF ARD+TF+NTAG  KH+
Sbjct: 54  KKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQ 113

Query: 86  AVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIF 145
           AVALRV SDLS FYRC    YQD+L+  S RQF+ +C I GT+DFI G+AA V Q+ DI 
Sbjct: 114 AVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIH 173

Query: 146 VRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAA------------------- 186
            RRP   Q NMVTAQGR +PN+NTGI I+ SRI   +DL                     
Sbjct: 174 ARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRT 233

Query: 187 ----TDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQA 242
               + +  +I+P GW  WDGNFAL TLYY EY N G GAAT+ RV W GF V+ +  +A
Sbjct: 234 VVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEA 293

Query: 243 APFTVTGFIQGDSWIPATGVPFWLGI 268
             FT   FI G SW+ AT  PF LG+
Sbjct: 294 QGFTPGSFIAGGSWLKATTFPFSLGL 319
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.5
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.16
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.7
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.39
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.37
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.93
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 94.54
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 94.41
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 93.64
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 93.48
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 93.29
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 93.23
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 92.03
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 91.99
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 91.82
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 91.28
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 89.79
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 88.23
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 87.34
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 85.1
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 84.41
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 81.85
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=6e-79  Score=564.39  Aligned_cols=268  Identities=49%  Similarity=0.846  Sum_probs=252.1

Q ss_pred             CCCCCCCcCCC-----------CCCceEEEEEE--------EeeCCCCcEEEEecCCCCeEEEecCCCCCCCCCCCceEE
Q 041032            1 MVPGNGQGRLG-----------SGTGRFSWHSQ--------NNQRSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATF   61 (268)
Q Consensus         1 ~v~~~g~g~~~-----------~~~~~~~I~Ik--------~i~~~k~~i~l~G~~~~~t~I~~~~~~~~g~~t~~saT~   61 (268)
                      +|+.+|.|+|+           .+++|++|+|+        .||+.||+|+|+|+++++|+|+++.+..++.+|+.+|||
T Consensus         6 ~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv   85 (317)
T 1xg2_A            6 VVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATL   85 (317)
T ss_dssp             EECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGGCSE
T ss_pred             EECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccceeEE
Confidence            58899999998           45789999999        778889999999999999999999988888999999999


Q ss_pred             EEeCCCEEEEeeEEEecCCCCCCeeEEEEeeCCeeeEEeceeeccCCeEEeCCccEEEEccEEeeeceeEeccceeEEEe
Q 041032           62 GVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQN  141 (268)
Q Consensus        62 ~v~a~~f~a~niti~Nt~g~~~~QAvAl~~~~dr~~f~~c~~~g~QDTL~~~~gr~yf~~c~I~G~vDFIfG~g~a~f~~  141 (268)
                      .|.+++|+++||||+|++++.++|||||++.+||++|++|+|+|+|||||++.+||||++|+|+|+||||||+|+|+||+
T Consensus        86 ~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~avf~~  165 (317)
T 1xg2_A           86 AAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQK  165 (317)
T ss_dssp             EECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEEEEES
T ss_pred             EEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceEEEee
Confidence            99999999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeccCCCCceEEEeCCCCCCCCCeeEEEEcCEEeeCCCC---------C--------------CCccCcccCCCCc
Q 041032          142 FDIFVRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADL---------A--------------ATDLDGIIHPEGW  198 (268)
Q Consensus       142 c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vf~~c~i~~~~~~---------~--------------~~~~~~~I~p~GW  198 (268)
                      |+|+++++..++.++||||+|+++.+++||||+||+|++++++         +              +|+|+++|+|+||
T Consensus       166 c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p~GW  245 (317)
T 1xg2_A          166 CQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGW  245 (317)
T ss_dssp             CEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBCTTCS
T ss_pred             eEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCccccccc
Confidence            9999998765678999999999999999999999999988742         1              9999999999999


Q ss_pred             cCCCCCCCCcceEEEEEccccCCCCCCCcccCCcccccCCHhhhcCccccccccCCCCCCCCCCccCCCC
Q 041032          199 IEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWLGI  268 (268)
Q Consensus       199 ~~w~~~~~~~~~~f~Ey~~~GpGa~~s~R~~w~~~~~l~t~~ea~~yt~~~~~~g~~W~p~~~~p~~~~~  268 (268)
                      .+|++..+.++++|+||+|+||||++++||+|+++++|++++||++|+..+||+|++|+|.+++||..+|
T Consensus       246 ~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          246 AEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             CCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             ccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            9999888889999999999999999999999999877756799999999999999889999999999886
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 2e-99
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 3e-56
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  291 bits (747), Expect = 2e-99
 Identities = 135/266 (50%), Positives = 164/266 (61%), Gaps = 23/266 (8%)

Query: 26  RSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATFGVSGDGFWARDMTFENTAGPQKHE 85
           +   N MF+GDG   TI+T  +NV DGSTT + AT    G GF ARD+TF+NTAG  KH+
Sbjct: 54  KKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQ 113

Query: 86  AVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQNFDIF 145
           AVALRV SDLS FYRC    YQD+L+  S RQF+ +C I GT+DFI G+AA V Q+ DI 
Sbjct: 114 AVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIH 173

Query: 146 VRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADLAA------------------- 186
            RRP   Q NMVTAQGR +PN+NTGI I+ SRI   +DL                     
Sbjct: 174 ARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRT 233

Query: 187 ----TDLDGIIHPEGWIEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQA 242
               + +  +I+P GW  WDGNFAL TLYY EY N G GAAT+ RV W GF V+ +  +A
Sbjct: 234 VVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEA 293

Query: 243 APFTVTGFIQGDSWIPATGVPFWLGI 268
             FT   FI G SW+ AT  PF LG+
Sbjct: 294 QGFTPGSFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.37
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.86
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.17
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 93.28
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.05
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 90.75
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 88.17
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 87.64
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 86.91
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 86.3
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 86.18
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 84.04
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 83.85
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 80.56
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.9e-84  Score=598.30  Aligned_cols=268  Identities=52%  Similarity=0.887  Sum_probs=253.9

Q ss_pred             CCCCCCCcCCC-----------CCCceEEEEEE--------EeeCCCCcEEEEecCCCCeEEEecCCCCCCCCCCCceEE
Q 041032            1 MVPGNGQGRLG-----------SGTGRFSWHSQ--------NNQRSMNNTMFVGDGIDRTIVTGHRNVPDGSTTSSPATF   61 (268)
Q Consensus         1 ~v~~~g~g~~~-----------~~~~~~~I~Ik--------~i~~~k~~i~l~G~~~~~t~I~~~~~~~~g~~t~~saT~   61 (268)
                      +|+.||+|+|+           .+++|++|+||        .||++||+|+|+|++++.|+|+++.++.++.+|..+|||
T Consensus        10 ~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~sat~   89 (319)
T d1gq8a_          10 VVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATV   89 (319)
T ss_dssp             EECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSE
T ss_pred             EECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccccccce
Confidence            69999999999           67789999999        789999999999999999999999999888999999999


Q ss_pred             EEeCCCEEEEeeEEEecCCCCCCeeEEEEeeCCeeeEEeceeeccCCeEEeCCccEEEEccEEeeeceeEeccceeEEEe
Q 041032           62 GVSGDGFWARDMTFENTAGPQKHEAVALRVSSDLSMFYRCSFKDYQDTLFTLSLRQFYRDCQIYGTIDFIVGDAAAVFQN  141 (268)
Q Consensus        62 ~v~a~~f~a~niti~Nt~g~~~~QAvAl~~~~dr~~f~~c~~~g~QDTL~~~~gr~yf~~c~I~G~vDFIfG~g~a~f~~  141 (268)
                      .|.+++|+++||||+|++|+.++|||||++.+||++||+|+|+|||||||++.|||||++|||||+||||||+|+|+||+
T Consensus        90 ~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a~f~~  169 (319)
T d1gq8a_          90 AAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQD  169 (319)
T ss_dssp             EECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCEEEEES
T ss_pred             eeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCceeEeec
Confidence            99999999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeccCCCCceEEEeCCCCCCCCCeeEEEEcCEEeeCCCC---------C--------------CCccCcccCCCCc
Q 041032          142 FDIFVRRPMHDQSNMVTAQGRDNPNENTGISIEGSRIRPAADL---------A--------------ATDLDGIIHPEGW  198 (268)
Q Consensus       142 c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vf~~c~i~~~~~~---------~--------------~~~~~~~I~p~GW  198 (268)
                      |+|+++++..++.++||||+|+++.+++||||++|+|++++++         +              +|+|++||.|+||
T Consensus       170 c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~I~p~GW  249 (319)
T d1gq8a_         170 CDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGW  249 (319)
T ss_dssp             CEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBCTTCC
T ss_pred             ceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccccccccc
Confidence            9999998766678999999999999999999999999998753         1              9999999999999


Q ss_pred             cCCCCCCCCcceEEEEEccccCCCCCCCcccCCcccccCCHhhhcCccccccccCCCCCCCCCCccCCCC
Q 041032          199 IEWDGNFALSTLYYAEYLNAGLGAATANRVKWPGFHVLNNPQQAAPFTVTGFIQGDSWIPATGVPFWLGI  268 (268)
Q Consensus       199 ~~w~~~~~~~~~~f~Ey~~~GpGa~~s~R~~w~~~~~l~t~~ea~~yt~~~~~~g~~W~p~~~~p~~~~~  268 (268)
                      .+|++....++++|+||+|+|||+++++||+|++++.+++++||+.|+..+||+|++|+|.++|||..+|
T Consensus       250 ~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         250 FPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             CCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999888889999999999999999999999997644449999999999999999889999999999986
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure