Citrus Sinensis ID: 041065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCTP
Secondary Structure (PSIPRED)
cEEEcccccHHHHHHHHHHHHccccccccccccccccccccccccEEccccccEEEEEccccccEEEEccccccccccccEEEccccccEEcccHHHHccccccEEEccccccEEcccccccccccccEEEccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEccccccccccccccccccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
flitisseSNEEADALLKWKASLKNHNRSLLSSCindatnvssktspcndagrvinislpnrgvngtlhdfsfssfphlayldltwngffgtippqisnlsNLRYIYlgsnqffgnipaeVGLLSHLEVLHIQLNrldgswrmctctp
Flexible Loop (DISEMBL)
flitissesneEADALLKWKASLKNHNRSLLSScindatnvssktspcnDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQlnrldgswrmctctp
Low Complexity Region (SEG)
FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCTP
Disordered region (IsUnstruct)
*****************KWK*********LLSSCIN***********CNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC**
Disordered Region (DISOPRED)
FLITI**ESNEEADALLKWKASLKN********CINDATNVSSKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCT*
Disordered Region (DISEMBL)
FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDAT********CNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCTP
Disordered Region (DISPRO)
FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.905	0.128	0.437	7e-21
Q9LP24	1120	Probable leucine-rich rep	no	no	0.837	0.110	0.454	6e-19
Q9C9N5	685	Probable inactive leucine	no	no	0.918	0.198	0.326	2e-11
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.898	0.216	0.35	2e-10
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.878	0.117	0.343	4e-10
Q9LVI6	647	Probable inactive recepto	no	no	0.648	0.148	0.352	7e-10
Q9LP77	655	Probable inactive recepto	no	no	0.648	0.146	0.372	7e-10
Q9M8T0	627	Probable inactive recepto	no	no	0.871	0.205	0.324	9e-10
Q00874	372	DNA-damage-repair/tolerat	no	no	0.608	0.241	0.359	2e-09
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.614	0.072	0.382	4e-09

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 3/137 (2%)

Query: 7   SESNEEADALLKWKASLKNH-NRSLLSSCINDATN--VSSKTSPCNDAGRVINISLPNRG 63
           S + EEA+ALLKWK++  N  + S LSS +N  T+   +S        G +I ++L N G
Sbjct: 45  SATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIRLNLTNTG 104

Query: 64  VNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGL 123
           + GT  DF FSS P+L ++DL+ N F GTI P     S L Y  L  NQ  G IP E+G 
Sbjct: 105 IEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGD 164

Query: 124 LSHLEVLHIQLNRLDGS 140
           LS+L+ LH+  N+L+GS
Sbjct: 165 LSNLDTLHLVENKLNGS 181

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 79/132 (59%), Gaps = 8/132 (6%)

Query: 12  EADALLKWKASLKNHNRSLLSSCINDA-TNVS-SKTS----PCNDAGRVINISLPNRGVN 65
           EA+ALLKWK++  N ++  LSS ++DA TN S S TS     CN  G +  ++L N G+ 
Sbjct: 33  EANALLKWKSTFTNSSK--LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIE 90

Query: 66  GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
           GT  DF F S  +LAY+DL+ N   GTIPPQ  NLS L Y  L +N   G I   +G L 
Sbjct: 91  GTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLK 150

Query: 126 HLEVLHIQLNRL 137
           +L VL++  N L
Sbjct: 151 NLTVLYLHQNYL 162

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 4   TISSESNEEADALLKWKASLKNHNRSLLSSC-INDATNVSSKTSPCNDAGRVINISLPNR 62
            I++  N++  ALL +K S++N + S+ ++   +D+   S +   CN   RV++I LPN+
Sbjct: 17  AIATSLNDQGLALLSFKQSIQNQSDSVFTNWNSSDSNPCSWQGVTCNYDMRVVSIRLPNK 76

Query: 63  GVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG 122
            ++G+L D S  S   L +++L  N F G +P ++  L  L+ + L  N F G +P E+G
Sbjct: 77  RLSGSL-DPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEIG 135

Query: 123 LLSHLEVLHIQLNRLDGS 140
            L  L  L +  N  +GS
Sbjct: 136 SLKSLMTLDLSENSFNGS 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 3   ITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKT---SPCNDAGRVINISL 59
           + +    N E DAL   K SL + N+ L S    DAT V+  T     CN    V  + L
Sbjct: 19  LVLRVSGNAEGDALSALKNSLADPNKVLQSW---DATLVTPCTWFHVTCNSDNSVTRVDL 75

Query: 60  PNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPA 119
            N  ++G L        P+L YL+L  N   GTIP Q+ NL+ L  + L  N   G IP+
Sbjct: 76  GNANLSGQLV-MQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPS 134

Query: 120 EVGLLSHLEVLHIQLNRLDG 139
            +G L  L  L +  N L G
Sbjct: 135 TLGRLKKLRFLRLNNNSLSG 154

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 10  NEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAG---RVINISLPNRGVNG 66
           N E   LL+ K+   +  ++L +   ND+         C++      V++++L +  ++G
Sbjct: 28  NLEGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSG 87

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            L   S     HL  LDL++NG  G IP +I N S+L  + L +NQF G IP E+G L  
Sbjct: 88  KLSP-SIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVS 146

Query: 127 LEVLHIQLNRLDGS 140
           LE L I  NR+ GS
Sbjct: 147 LENLIIYNNRISGS 160

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVI6|RLK90_ARATH Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 44  KTSPCN------DAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI 97
           +TSPCN      D GRV  + LP   ++G + +  F +   L  L L  NG  G++P  +
Sbjct: 56  QTSPCNWTGVLCDGGRVTALRLPGETLSGHIPEGIFGNLTQLRTLSLRLNGLTGSLPLDL 115

Query: 98  SNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
            + S+LR +YL  N+F G IP  +  LS+L  L++  N   G
Sbjct: 116 GSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSG 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP77|Y1848_ARATH Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 44  KTSPCNDAG------RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI 97
           +TSPCN AG      RV  + LP   ++G + +  F +   L  L L  N   G++P  +
Sbjct: 58  QTSPCNWAGVKCESNRVTALRLPGVALSGDIPEGIFGNLTQLRTLSLRLNALSGSLPKDL 117

Query: 98  SNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
           S  SNLR++YL  N+F G IP  +  LSHL  L++  N   G
Sbjct: 118 STSSNLRHLYLQGNRFSGEIPEVLFSLSHLVRLNLASNSFTG 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8T0|Y3288_ARATH Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 16/145 (11%)

Query: 1   FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCN------DAGRV 54
           +L  ++S+   +  ALL  + S++   R LL +         S +SPCN      DAGRV
Sbjct: 18  YLAAVTSDLESDRRALLAVRNSVRG--RPLLWNM--------SASSPCNWHGVHCDAGRV 67

Query: 55  INISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFF 114
             + LP  G+ G+L      +   L  L L +N   G IP   SNL  LRY+YL  N F 
Sbjct: 68  TALRLPGSGLFGSLPIGGIGNLTQLKTLSLRFNSLSGPIPSDFSNLVLLRYLYLQGNAFS 127

Query: 115 GNIPAEVGLLSHLEVLHIQLNRLDG 139
           G IP+ +  L  +  +++  N+  G
Sbjct: 128 GEIPSLLFTLPSIIRINLGENKFSG 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 13/103 (12%)

Query: 50  DAGRVINISLPNRGVNGTLHDFSFSSFP----HLAYLDLT---------WNGFFGTIPPQ 96
           D+GRV +ISL     +        S +       A  DLT         W G  G IPP 
Sbjct: 71  DSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPC 130

Query: 97  ISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
           I++L++LR + L  N+  G IPAE+G LS L VL++  N++ G
Sbjct: 131 ITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSG 173

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 48  CNDAG--RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRY 105
           C++ G  RVI ++L   G+ G++  + F  F +L +LDL+ N   G IP  +SNL++L  
Sbjct: 65  CDNTGLFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDLSSNNLVGPIPTALSNLTSLES 123

Query: 106 IYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
           ++L SNQ  G IP+++G L ++  L I  N L G
Sbjct: 124 LFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVG 157

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
225456159	1038	PREDICTED: probable LRR receptor-like se	0.918	0.131	0.54	1e-32
225456161	1037	PREDICTED: probable LRR receptor-like se	0.918	0.131	0.52	6e-31
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.918	0.131	0.523	8e-30
359491509	1032	PREDICTED: probable LRR receptor-like se	0.918	0.131	0.523	8e-30
359491512	1078	PREDICTED: probable LRR receptor-like se	0.918	0.126	0.490	1e-28
6635236	861	elicitor-inducible LRR receptor-like pro	0.932	0.160	0.460	7e-24
60327224	487	Hcr2-p7.6 [Solanum pimpinellifolium]	0.891	0.271	0.445	9e-24
60327218	487	Hcr2-p7.3 [Solanum pimpinellifolium]	0.891	0.271	0.445	9e-24
60327230	487	Hcr2-p7.9 [Solanum pimpinellifolium]	0.891	0.271	0.445	9e-24
60327228	487	Hcr2-p7.8 [Solanum pimpinellifolium]	0.891	0.271	0.445	9e-24

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/150 (54%), Positives = 102/150 (68%), Gaps = 14/150 (9%)

Query: 5   ISSESNEEADALLKWKASLKNHNRSLLSS-------CINDATNVSSKTSPC-------ND 50
           +SS SNEE  ALLKWKASL+NHN S L S         N +T++ + TSPC       N 
Sbjct: 27  VSSYSNEETQALLKWKASLQNHNHSSLLSWDLYPNNSTNSSTHLGTATSPCKWYGISCNH 86

Query: 51  AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS 110
           AG VI I+L   G+NGTL DFSFSSFP+LAY+D++ N   G IPPQI  L  L+Y+ L  
Sbjct: 87  AGSVIKINLTESGLNGTLMDFSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLDLSI 146

Query: 111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGS 140
           NQF G IP+E+GLL++LEVLH+  N+L+GS
Sbjct: 147 NQFSGGIPSEIGLLTNLEVLHLVQNQLNGS 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 14/150 (9%)

Query: 5   ISSESNEEADALLKWKASLKNHNRSLLSS-------CINDATNVSSKTSPC-------ND 50
           +SS SNEE  ALLKWKA+L NHN S L S         N +T++ ++ SPC       N 
Sbjct: 27  VSSYSNEETQALLKWKATLHNHNHSSLLSWTLYPNNFTNSSTHLGTEVSPCKWYGISCNH 86

Query: 51  AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS 110
           AG VI I+L   G+ GTL  FSFSSFP+LAY+D++ N   G IPPQI  LS L+Y+ L  
Sbjct: 87  AGSVIRINLTESGLGGTLQAFSFSSFPNLAYVDISMNNLSGPIPPQIGLLSKLKYLDLSI 146

Query: 111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGS 140
           NQF G IP E+GLL++LEVLH+  N+L+GS
Sbjct: 147 NQFSGGIPPEIGLLTNLEVLHLVQNQLNGS 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 11/147 (7%)

Query: 5   ISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSK-----TSPCN------DAGR 53
           +SS SNEE  ALLKWKA+L N N  L S   N+ TN S++      +PC        AG 
Sbjct: 27  VSSHSNEETQALLKWKATLLNQNLLLWSLHPNNITNSSAQPGTATRTPCKWFGISCKAGS 86

Query: 54  VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF 113
           VI I+L + G+ GTL DFSFSSFP+LAY D+  N   G IPPQI  LS L+Y+ L +NQF
Sbjct: 87  VIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLSTNQF 146

Query: 114 FGNIPAEVGLLSHLEVLHIQLNRLDGS 140
            G IP+E+GLL++LEVLH+  N+L+GS
Sbjct: 147 SGRIPSEIGLLTNLEVLHLVENQLNGS 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 11/147 (7%)

Query: 5   ISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSK-----TSPCN------DAGR 53
           +SS SNEE  ALLKWKA+L N N  L S   N+ TN S++      +PC        AG 
Sbjct: 27  VSSHSNEETQALLKWKATLLNQNLLLWSLHPNNITNSSAQPGTATRTPCKWFGISCKAGS 86

Query: 54  VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF 113
           VI I+L + G+ GTL DFSFSSFP+LAY D+  N   G IPPQI  LS L+Y+ L +NQF
Sbjct: 87  VIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLSTNQF 146

Query: 114 FGNIPAEVGLLSHLEVLHIQLNRLDGS 140
            G IP+E+GLL++LEVLH+  N+L+GS
Sbjct: 147 SGRIPSEIGLLTNLEVLHLVENQLNGS 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/155 (49%), Positives = 97/155 (62%), Gaps = 19/155 (12%)

Query: 5   ISSESNEEADALLKWKASLKNHNRSLLSS---------CINDATNVSSKTSPC------- 48
           + S+SNEE  ALLKWK++L NHN S L S           N +T+  + T PC       
Sbjct: 53  MKSDSNEETQALLKWKSTLHNHNHSFLLSWTLYPDPNNSTNSSTHHGTATGPCKWYGISC 112

Query: 49  NDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYL 108
           N AG VI I+L   G+ GTL  FSFSSFP+LAY+D+  N   G IPPQI  LS L+Y+ L
Sbjct: 113 NHAGSVIRINLTESGLRGTLQAFSFSSFPNLAYVDVCINNLSGPIPPQIGLLSKLKYLDL 172

Query: 109 GSNQFFGNIPAEVGLLSHLEVLH---IQLNRLDGS 140
            +NQF G IP E+GLL++LEVLH   +  N+L+GS
Sbjct: 173 STNQFSGGIPPEIGLLTNLEVLHLLALYTNQLEGS 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6635236|dbj|BAA88636.1| elicitor-inducible LRR receptor-like protein EILP [Nicotiana tabacum]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/139 (46%), Positives = 86/139 (61%)

Query: 2   LITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPN 61
           L T++  S +EA ALLKWKA+L+N + SLL S    +    S        GRV  + +P 
Sbjct: 19  LFTVTFASTKEATALLKWKATLQNQSNSLLVSWTPSSKACKSWYGVVCFNGRVSKLDIPY 78

Query: 62  RGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV 121
            GV GTL++F FSS P L Y+DL+ N  FG+IPP+I  L+NL Y+ L  NQ  G IP ++
Sbjct: 79  AGVIGTLNNFPFSSLPFLEYIDLSMNQLFGSIPPEIGKLTNLVYLDLSFNQISGTIPPQI 138

Query: 122 GLLSHLEVLHIQLNRLDGS 140
           G L+ L+ LHI  N L+GS
Sbjct: 139 GSLAKLQTLHILDNHLNGS 157

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60327224|gb|AAX19035.1| Hcr2-p7.6 [Solanum pimpinellifolium]

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 14/146 (9%)

Query: 1   FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCND-------AGR 53
           +L T++  S EEA ALLKWKA+ KN N S L+S I         ++ C D        GR
Sbjct: 19  YLFTVAFASTEEATALLKWKATFKNQNNSFLASWI-------PSSNACKDWDGVVCFNGR 71

Query: 54  VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF 113
           V  +++ N  V GTL+ F FSS P L  LDL+ N  +GTIPP+I NL+NL Y+ L +NQ 
Sbjct: 72  VNTLNITNASVIGTLYAFPFSSLPSLENLDLSKNNIYGTIPPEIGNLTNLVYLDLNNNQI 131

Query: 114 FGNIPAEVGLLSHLEVLHIQLNRLDG 139
            G IP ++GLL+ L+++ I  N+L+G
Sbjct: 132 SGTIPPQIGLLAKLQIIRIFHNQLNG 157

Source: Solanum pimpinellifolium

Species: Solanum pimpinellifolium

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60327218|gb|AAX19032.1| Hcr2-p7.3 [Solanum pimpinellifolium]

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 14/146 (9%)

Query: 1   FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCND-------AGR 53
           +L T++  S EEA ALLKWKA+ KN N S L+S I         ++ C D        GR
Sbjct: 19  YLFTVAFASTEEATALLKWKATFKNQNNSFLASWI-------PSSNACKDWDGVVCFNGR 71

Query: 54  VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF 113
           V  +++ N  V GTL+ F FSS P L  LDL+ N  +GTIPP+I NL+NL Y+ L +NQ 
Sbjct: 72  VNTLNITNASVIGTLYAFPFSSLPSLENLDLSKNNIYGTIPPEIGNLTNLVYLDLNNNQI 131

Query: 114 FGNIPAEVGLLSHLEVLHIQLNRLDG 139
            G IP ++GLL+ L+++ I  N+L+G
Sbjct: 132 SGTIPPQIGLLAKLQIIRIFHNQLNG 157

Source: Solanum pimpinellifolium

Species: Solanum pimpinellifolium

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60327230|gb|AAX19038.1| Hcr2-p7.9 [Solanum pimpinellifolium]

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 14/146 (9%)

Query: 1   FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCND-------AGR 53
           +L T++  S EEA ALLKWKA+ KN N S L+S I         ++ C D        GR
Sbjct: 19  YLFTVAFASTEEATALLKWKATFKNQNNSFLASWI-------PSSNACKDWDGVVCFNGR 71

Query: 54  VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF 113
           V  +++ N  V GTL+ F FSS P L  LDL+ N  +GTIPP+I NL+NL Y+ L +NQ 
Sbjct: 72  VNTLNITNASVIGTLYAFPFSSLPSLENLDLSKNNIYGTIPPEIGNLTNLVYLDLNNNQI 131

Query: 114 FGNIPAEVGLLSHLEVLHIQLNRLDG 139
            G IP ++GLL+ L+++ I  N+L+G
Sbjct: 132 SGTIPPQIGLLAKLQIIRIFHNQLNG 157

Source: Solanum pimpinellifolium

Species: Solanum pimpinellifolium

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60327228|gb|AAX19037.1| Hcr2-p7.8 [Solanum pimpinellifolium]

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 14/146 (9%)

Query: 1   FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCND-------AGR 53
           +L T++  S EEA ALLKWKA+ KN N S L+S I         ++ C D        GR
Sbjct: 19  YLFTVAFASTEEATALLKWKATFKNQNNSFLASWI-------PSSNACKDWDGVVCFNGR 71

Query: 54  VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF 113
           V  +++ N  V GTL+ F FSS P L  LDL+ N  +GTIPP+I NL+NL Y+ L +NQ 
Sbjct: 72  VNTLNITNASVIGTLYAFPFSSLPSLENLDLSKNNIYGTIPPEIGNLTNLVYLDLNNNQI 131

Query: 114 FGNIPAEVGLLSHLEVLHIQLNRLDG 139
            G IP ++GLL+ L+++ I  N+L+G
Sbjct: 132 SGTIPPQIGLLAKLQIIRIFHNQLNG 157

Source: Solanum pimpinellifolium

Species: Solanum pimpinellifolium

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.891	0.126	0.453	7.7e-22
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.878	0.116	0.442	3.4e-20
TAIR|locus:2033379	685	AT1G66830 [Arabidopsis thalian	0.912	0.197	0.328	3.9e-13
TAIR|locus:2132634	688	AT4G22730 [Arabidopsis thalian	0.932	0.200	0.361	3.9e-13
TAIR|locus:2153097	680	AT5G51560 [Arabidopsis thalian	0.912	0.198	0.323	6.3e-13
TAIR|locus:2050877	691	AT2G45340 [Arabidopsis thalian	0.932	0.199	0.384	6.5e-13
TAIR|locus:2178968	218	AT5G21090 [Arabidopsis thalian	0.925	0.628	0.351	3.1e-12
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.932	0.125	0.338	7e-12
TAIR|locus:2155001	418	AT5G66330 [Arabidopsis thalian	0.601	0.212	0.422	1.1e-11
TAIR|locus:2171973	614	AT5G45780 [Arabidopsis thalian	0.871	0.210	0.323	1.7e-11

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 7.7e-22, P = 7.7e-22
 Identities = 63/139 (45%), Positives = 85/139 (61%)

Query:     7 SESNEEADALLKWKASLKNH-NRSLLSSCINDATNVSSKTS----PCNDAGRVINISLPN 61
             S + EEA+ALLKWK++  N  + S LSS +N  T+ S  TS     C+  G +I ++L N
Sbjct:    45 SATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTS-SFCTSWYGVACS-LGSIIRLNLTN 102

Query:    62 RGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV 121
              G+ GT  DF FSS P+L ++DL+ N F GTI P     S L Y  L  NQ  G IP E+
Sbjct:   103 TGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPEL 162

Query:   122 GLLSHLEVLHIQLNRLDGS 140
             G LS+L+ LH+  N+L+GS
Sbjct:   163 GDLSNLDTLHLVENKLNGS 181

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 61/138 (44%), Positives = 82/138 (59%)

Query:     6 SSESNEEADALLKWKASLKNHNRSLLSSCINDA-TNVS-SKTS----PCNDAGRVINISL 59
             +S +  EA+ALLKWK++  N ++  LSS ++DA TN S S TS     CN  G +  ++L
Sbjct:    27 ASATIAEANALLKWKSTFTNSSK--LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNL 84

Query:    60 PNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPA 119
              N G+ GT  DF F S  +LAY+DL+ N   GTIPPQ  NLS L Y  L +N   G I  
Sbjct:    85 TNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISP 144

Query:   120 EVGLLSHLEVLHIQLNRL 137
              +G L +L VL++  N L
Sbjct:   145 SLGNLKNLTVLYLHQNYL 162

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2033379 AT1G66830 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 45/137 (32%), Positives = 77/137 (56%)

Query:     5 ISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSS-KTSPCNDAGRVINISLPNRG 63
             I++  N++  ALL +K S++N + S+ ++  +  +N  S +   CN   RV++I LPN+ 
Sbjct:    18 IATSLNDQGLALLSFKQSIQNQSDSVFTNWNSSDSNPCSWQGVTCNYDMRVVSIRLPNKR 77

Query:    64 VNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGL 123
             ++G+L D S  S   L +++L  N F G +P ++  L  L+ + L  N F G +P E+G 
Sbjct:    78 LSGSL-DPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEIGS 136

Query:   124 LSHLEVLHIQLNRLDGS 140
             L  L  L +  N  +GS
Sbjct:   137 LKSLMTLDLSENSFNGS 153

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2132634 AT4G22730 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 51/141 (36%), Positives = 76/141 (53%)

Query:     1 FLITISS-ESNEEADALLKWKASLKNHNRSLLSSCIN-DATNVSSKTSPCNDAGRVINIS 58
             FL T S+   N E  AL++ K+SL   N+ L S   N D  + S +   CN   +V NIS
Sbjct:    15 FLATPSNVRGNAELKALMELKSSLDPENKLLRSWTFNGDPCDGSFEGIACNQHLKVANIS 74

Query:    59 LPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP 118
             L  + + G L   + +    L+ L L +N   G IP +I+NL+ L  +YL  N F G IP
Sbjct:    75 LQGKRLVGKLSP-AVAELKCLSGLYLHYNSLSGEIPQEITNLTELSDLYLNVNNFSGEIP 133

Query:   119 AEVGLLSHLEVLHIQLNRLDG 139
             A++G ++ L+V+ +  N L G
Sbjct:   134 ADIGSMAGLQVMDLCCNSLTG 154

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2153097 AT5G51560 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 44/136 (32%), Positives = 68/136 (50%)

Query:     5 ISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGV 64
             + +E  +E   L++ K  L   ++ L S  +N       +   C+  GRV NISL  +G+
Sbjct:    24 VMAEITDELATLMEVKTELDPEDKHLASWSVNGDLCKDFEGVGCDWKGRVSNISLQGKGL 83

Query:    65 NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLL 124
             +G +   +     HL  L L +N   G IP ++ NLS L  +YL  N   G IP+ +G +
Sbjct:    84 SGKISP-NIGKLKHLTGLFLHYNALVGDIPRELGNLSELTDLYLNVNNLSGEIPSNIGKM 142

Query:   125 SHLEVLHIQLNRLDGS 140
               L+VL +  N L GS
Sbjct:   143 QGLQVLQLCYNNLTGS 158

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2050877 AT2G45340 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 55/143 (38%), Positives = 71/143 (49%)

Query:     1 FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSP---CNDAGRVINI 57
             FL +  S S+ E D LL  K+SL    R  L+S   DA   SS +     C+   RV NI
Sbjct:    15 FLSSALSSSSSELDILLDIKSSLDPEKR-FLTSWTPDADPCSSGSFDGVACDGNRRVANI 73

Query:    58 SLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNI 117
             SL   G+ GT+   S      L  L L +N   G IP  ISNL  L  +YL  N   G I
Sbjct:    74 SLQGMGLTGTIPP-SIGLLTSLTGLYLHFNSLTGHIPKDISNLPLLTDLYLNVNNLSGEI 132

Query:   118 PAEVGLLSHLEVLHIQLNRLDGS 140
             P  +G L +L+V+ +  N+L GS
Sbjct:   133 PPLIGNLDNLQVIQLCYNKLSGS 155

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2178968 AT5G21090 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 51/145 (35%), Positives = 67/145 (46%)

Query:     8 ESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKT---SPCNDAGRVINISLPNRGV 64
             E+N E DAL   + SL + +  L S    D T V+  T     CN   RV  + L N  +
Sbjct:    26 EANSEGDALYALRRSLTDPDHVLQSW---DPTLVNPCTWFHVTCNQDNRVTRVDLGNSNL 82

Query:    65 NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLL 124
             +G L         HL YL+L  N   GTIP ++ NL NL  + L +N   G +P  +G L
Sbjct:    83 SGHLAP-ELGKLEHLQYLELYKNNIQGTIPSELGNLKNLISLDLYNNNLTGIVPTSLGKL 141

Query:   125 SHLEVLHIQLNRLDGSW-RMCTCTP 148
               L  L +  NRL G   R  T  P
Sbjct:   142 KSLVFLRLNDNRLTGPIPRALTAIP 166

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 7.0e-12, P = 7.0e-12
 Identities = 48/142 (33%), Positives = 75/142 (52%)

Query:     2 LITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAG---RVINIS 58
             LI+ ++  N E   LL+ K+   +  ++L +   ND+         C++      V++++
Sbjct:    20 LISETTGLNLEGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLN 79

Query:    59 LPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP 118
             L +  ++G L   S     HL  LDL++NG  G IP +I N S+L  + L +NQF G IP
Sbjct:    80 LSSMVLSGKLSP-SIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIP 138

Query:   119 AEVGLLSHLEVLHIQLNRLDGS 140
              E+G L  LE L I  NR+ GS
Sbjct:   139 VEIGKLVSLENLIIYNNRISGS 160

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2155001 AT5G66330 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 38/90 (42%), Positives = 54/90 (60%)

Query:    51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS 110
             +GRV  +SL   G +G+L   SF+  P+L  LDL+ N F G +P  +SNL+ L  + +  
Sbjct:    79 SGRVTELSLDQAGYSGSLSSVSFN-LPYLQTLDLSGNYFSGPLPDSLSNLTRLTRLTVSG 137

Query:   111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGS 140
             N F G+IP  VG ++ LE L +  NRL GS
Sbjct:   138 NSFSGSIPDSVGSMTVLEELVLDSNRLYGS 167

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2171973 AT5G45780 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 42/130 (32%), Positives = 62/130 (47%)

Query:    10 NEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGTLH 69
             N E  AL+  K  +K+    L    IN     +     C+  G V+++ + ++G++G L 
Sbjct:    37 NYEVAALMSVKNKMKDEKEVLSGWDINSVDPCTWNMVGCSSEGFVVSLEMASKGLSGILS 96

Query:    70 DFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEV 129
               S     HL  L L  N   G IP ++  LS L  + L  N+F G IPA +G L+HL  
Sbjct:    97 T-SIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNY 155

Query:   130 LHIQLNRLDG 139
             L +  N L G
Sbjct:   156 LRLSRNLLSG 165

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017828001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (438 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 26/65 (40%), Positives = 38/65 (58%)

Query: 75  SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQL 134
           SF  L  LDL  N   G IP  ++NL++L ++ L SNQ  G IP E+G +  L+ +++  
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 135 NRLDG 139
           N L G
Sbjct: 222 NNLSG 226

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 57  ISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGN 116
           + L N+G+ G + +   S   HL  ++L+ N   G IPP + ++++L  + L  N F G+
Sbjct: 423 LGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 117 IPAEVGLLSHLEVLHIQLNRLDG 139
           IP  +G L+ L +L++  N L G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 75  SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQL 134
           S P+L  LDL+ N   G IP  I + S+L+ + LG N   G IP  +  L+ LE L +  
Sbjct: 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 135 NRLDG 139
           N+L G
Sbjct: 198 NQLVG 202

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 31/155 (20%)

Query: 11  EEADALLKWKASLKNHNRSLLS-SCINDATNVSSKTSPCNDAGRVINISLPNRGVNGTL- 68
           EE + LL +K+S+ +  + L + +   D       T  CN++ RV++I L  + ++G + 
Sbjct: 29  EELELLLSFKSSINDPLKYLSNWNSSADVCLWQGIT--CNNSSRVVSIDLSGKNISGKIS 86

Query: 69  ------------------------HDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLR 104
                                    D   +S   L YL+L+ N F G+IP    ++ NL 
Sbjct: 87  SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS-LRYLNLSNNNFTGSIPR--GSIPNLE 143

Query: 105 YIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
            + L +N   G IP ++G  S L+VL +  N L G
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 25/69 (36%), Positives = 37/69 (53%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           S ++   L +L L  N   G IP ++  + +L++IYLG N   G IP E+G L+ L  L 
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 132 IQLNRLDGS 140
           +  N L G 
Sbjct: 243 LVYNNLTGP 251

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 79  LAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138
           L +LDL +N   G IP  + NL NL+Y++L  N+  G IP  +  L  L  L +  N L 
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 139 G 139
           G
Sbjct: 298 G 298

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 25/59 (42%), Positives = 32/59 (54%)

Query: 82  LDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGS 140
           L L   G  G IP  IS L +L+ I L  N   GNIP  +G ++ LEVL +  N  +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 26/68 (38%), Positives = 33/68 (48%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           S  +  +L YL L  N   G IPP I +L  L  + L  N   G IP  V  L +LE+LH
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

Query: 132 IQLNRLDG 139
           +  N   G
Sbjct: 315 LFSNNFTG 322

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 26/68 (38%), Positives = 34/68 (50%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           S  S   L  LDL+ N   G IP  +  L NL  ++L SN F G IP  +  L  L+VL 
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 132 IQLNRLDG 139
           +  N+  G
Sbjct: 339 LWSNKFSG 346

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 56  NISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG 115
           +I+L    + G +   S  S   L  LDL++N F G+IP  +  L++LR + L  N   G
Sbjct: 446 SINLSGNSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Query: 116 NIPAEVG 122
            +PA +G
Sbjct: 505 RVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 79  LAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138
           L  L L  N F G IP  +++L  L+ + L SN+F G IP  +G  ++L VL +  N L 
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Query: 139 G 139
           G
Sbjct: 370 G 370

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 22/68 (32%), Positives = 30/68 (44%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
              S   L  L L+ N   G IP ++S+   L  + L  NQ  G IPA    +  L  L 
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 132 IQLNRLDG 139
           +  N+L G
Sbjct: 554 LSQNQLSG 561

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 79  LAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD 138
           L ++ L +N   G IP +I  L++L ++ L  N   G IP+ +G L +L+ L +  N+L 
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 139 GS 140
           G 
Sbjct: 274 GP 275

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 53  RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQ 112
           +++++ L +  ++G +   SFS  P L+ LDL+ N   G IP  + N+ +L  + +  N 
Sbjct: 524 KLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582

Query: 113 FFGNIP 118
             G++P
Sbjct: 583 LHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 57  ISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGN 116
           +SL      G L D   S    L  LDL+ N F G +P ++ +LS L  + L  N+  G 
Sbjct: 457 LSLARNKFFGGLPDSFGSK--RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514

Query: 117 IPAEVGLLSHLEVLHIQLNRLDG 139
           IP E+     L  L +  N+L G
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLSG 537

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 25/67 (37%), Positives = 32/67 (47%)

Query: 74  SSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133
           SS   L  LDL+ N   G IP   S +  L  + L  NQ  G IP  +G +  L  ++I 
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 134 LNRLDGS 140
            N L GS
Sbjct: 580 HNHLHGS 586

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
PLN03150	623	hypothetical protein; Provisional	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.46
PLN03150	623	hypothetical protein; Provisional	99.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.18
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.17
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.73
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.64
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.64
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.57
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.53
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.44
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.4
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.39
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.38
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.33
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.32
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.05
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.96
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.7
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.63
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.08
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.89
smart00370	26	LRR Leucine-rich repeats, outliers.	95.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.55
PRK15386	426	type III secretion protein GogB; Provisional	95.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.26
smart00370	26	LRR Leucine-rich repeats, outliers.	94.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.88
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.9
PRK15386	426	type III secretion protein GogB; Provisional	93.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.03
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.26
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.17
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.06
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.67
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	80.66

>PLN03150 hypothetical protein; Provisional

Probab=99.85  E-value=7.1e-21  Score=154.58  Aligned_cols=134  Identities=26%  Similarity=0.367  Sum_probs=118.0

Q ss_pred             CCCHHHHHHHHHHHHhccCCCCCCcCCCcCCCCCc-----cccceeeCCC-----CCeEEEEcCCCCccceecCCCCCCC
Q 041065            7 SESNEEADALLKWKASLKNHNRSLLSSCINDATNV-----SSKTSPCNDA-----GRVINISLPNRGVNGTLHDFSFSSF   76 (148)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~c-----~~~gv~c~~~-----~~l~~L~l~~n~l~~~~p~~~~~~l   76 (148)
                      .....|..+|..+|..+..+.   ..+|.+  ++|     .|.|+.|...     ..++.|+|++|.+.|.+|. .+..+
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~---~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~L  441 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPL---RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKL  441 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCcc---cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhCC
Confidence            345678999999999886432   237965  345     6999999522     2489999999999999997 89999


Q ss_pred             CCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065           77 PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus        77 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      ++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|++|+|++|+++|.+|..++
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999998765

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=7.7e-21  Score=160.72  Aligned_cols=137  Identities=30%  Similarity=0.480  Sum_probs=104.2

Q ss_pred             CCHHHHHHHHHHHHhccCCCCCCcCCCcCCCCCccccceeeCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccC
Q 041065            8 ESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWN   87 (148)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~c~~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n   87 (148)
                      ..++|+.+|++||+++.++ .....+|+...++|.|.|++|...++|+.|++++|++.+.++. .+..+++|+.|+|++|
T Consensus        26 ~~~~~~~~l~~~~~~~~~~-~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         26 LHAEELELLLSFKSSINDP-LKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNN  103 (968)
T ss_pred             CCHHHHHHHHHHHHhCCCC-cccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCC
Confidence            3568999999999998653 3346899877789999999998778999999999999888876 7888888999999988


Q ss_pred             ccccCCCcccc-CCCCCceeecCCCcccc----------------------cCCccccCCCCCcEEEccCccccccCCCC
Q 041065           88 GFFGTIPPQIS-NLSNLRYIYLGSNQFFG----------------------NIPAEVGLLSHLEVLHIQLNRLDGSWRMC  144 (148)
Q Consensus        88 ~l~g~~p~~~~-~l~~L~~L~ls~n~l~g----------------------~~p~~~~~l~~L~~L~l~~N~l~g~iP~~  144 (148)
                      .++|.+|..+. .+++|++|++++|+++|                      .+|..++.+++|++|++++|.+.+.+|..
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  183 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS  183 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence            88888887654 66666666666666554                      44555556666666666666666666655


Q ss_pred             Cc
Q 041065          145 TC  146 (148)
Q Consensus       145 ~~  146 (148)
                      ++
T Consensus       184 ~~  185 (968)
T PLN00113        184 LT  185 (968)
T ss_pred             hh
Confidence            44

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.46  E-value=8.2e-14  Score=118.28  Aligned_cols=89  Identities=31%  Similarity=0.506  Sum_probs=46.3

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      ++.|++++|.+.+.+|. .+..+++|++|++++|.++|.+|..+..+++|+.|++++|+++|.+|..+..+++|+.|+++
T Consensus       501 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  579 (968)
T PLN00113        501 LMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS  579 (968)
T ss_pred             cCEEECcCCcceeeCCh-HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence            34444444444444443 44455555555555555555555555555555555555555555555555555555555555


Q ss_pred             CccccccCCC
Q 041065          134 LNRLDGSWRM  143 (148)
Q Consensus       134 ~N~l~g~iP~  143 (148)
                      +|+++|.+|.
T Consensus       580 ~N~l~~~~p~  589 (968)
T PLN00113        580 HNHLHGSLPS  589 (968)
T ss_pred             CCcceeeCCC
Confidence            5555555553

>PLN03150 hypothetical protein; Provisional

Probab=99.27  E-value=6.7e-12  Score=102.46  Aligned_cols=91  Identities=27%  Similarity=0.426  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCC-CCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLL-SHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l-~~L~~L  130 (148)
                      .+++.|+|++|.+.|.+|. .+..+++|+.|+|++|.++|.+|..++++++|++|+|++|+++|.+|..++.+ .++..+
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            5789999999999999997 89999999999999999999999999999999999999999999999988764 467889


Q ss_pred             EccCccccccCCC
Q 041065          131 HIQLNRLDGSWRM  143 (148)
Q Consensus       131 ~l~~N~l~g~iP~  143 (148)
                      ++.+|.....+|.
T Consensus       521 ~~~~N~~lc~~p~  533 (623)
T PLN03150        521 NFTDNAGLCGIPG  533 (623)
T ss_pred             EecCCccccCCCC
Confidence            9999986655553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.18  E-value=2.1e-11  Score=70.41  Aligned_cols=61  Identities=33%  Similarity=0.414  Sum_probs=41.4

Q ss_pred             CCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccc
Q 041065           77 PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRL  137 (148)
Q Consensus        77 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l  137 (148)
                      ++|++|++++|+++...+..|..+++|++|++++|.++..-|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777644445566777777777777777754455677777777777777764

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.17  E-value=2.5e-12  Score=88.53  Aligned_cols=91  Identities=24%  Similarity=0.400  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      +.+++.|.|++|.++ .+|+ .+..+.+|+.|++++|+++ .+|.+++.++.|+.|+++-|++. .+|..||.++.|++|
T Consensus        32 ~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            356778888888887 4554 6888888888888888887 77888888888888888888887 788888888888888


Q ss_pred             EccCcccc-ccCCCCC
Q 041065          131 HIQLNRLD-GSWRMCT  145 (148)
Q Consensus       131 ~l~~N~l~-g~iP~~~  145 (148)
                      ||.+|++. ..+|..|
T Consensus       108 dltynnl~e~~lpgnf  123 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNF  123 (264)
T ss_pred             hccccccccccCCcch
Confidence            88887776 4556543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.05  E-value=3.1e-12  Score=88.05  Aligned_cols=73  Identities=34%  Similarity=0.488  Sum_probs=42.1

Q ss_pred             CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCcC
Q 041065           72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCT  147 (148)
Q Consensus        72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~  147 (148)
                      .|..|..|+.|+|+.|.|. .+|+.++++++|+.|.+.+|.+- .+|.+++.++.|+.|++.+|.++ .+|+++++
T Consensus       122 nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  122 NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            3333444444444444443 45556666666666666666665 56666666666666666666666 66666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=3.5e-10  Score=65.21  Aligned_cols=60  Identities=35%  Similarity=0.535  Sum_probs=53.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF  113 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l  113 (148)
                      +++.|++++|.++. +|...|..+++|++|++++|.++...|..|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESE-ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            68899999999984 5544899999999999999999976777899999999999999975

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.95  E-value=1.4e-09  Score=58.35  Aligned_cols=40  Identities=33%  Similarity=0.437  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhccCCCCCCcCCCcCC--CCCccccceeeC
Q 041065           10 NEEADALLKWKASLKNHNRSLLSSCIND--ATNVSSKTSPCN   49 (148)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~--~~~c~~~gv~c~   49 (148)
                      ++|+++|++||+++.+++...+.+|+..  .++|+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            5799999999999986555558999876  789999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=6.1e-09  Score=72.34  Aligned_cols=83  Identities=27%  Similarity=0.389  Sum_probs=39.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccc-cCCCCCceeecCCCcccccC-CccccCCCCCcE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNI-PAEVGLLSHLEV  129 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L~ls~n~l~g~~-p~~~~~l~~L~~  129 (148)
                      .+++.|++++|.++ .+.  .+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|++...- -..+..+++|++
T Consensus        42 ~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   42 DKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             TT--EEE-TTS--S---T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             cCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            47899999999988 354  4778899999999999998 455444 35889999999999997311 135677899999


Q ss_pred             EEccCcccc
Q 041065          130 LHIQLNRLD  138 (148)
Q Consensus       130 L~l~~N~l~  138 (148)
                      |++.+|.++
T Consensus       118 L~L~~NPv~  126 (175)
T PF14580_consen  118 LSLEGNPVC  126 (175)
T ss_dssp             EE-TT-GGG
T ss_pred             eeccCCccc
Confidence            999999876

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.76  E-value=5.9e-09  Score=72.41  Aligned_cols=80  Identities=19%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             CeEEEEcCCCCccceecCCCCC-CCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccc-cCCCCCcEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFS-SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL  130 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L  130 (148)
                      ++++|+|++|.++. +.  .+. .+.+|+.|++++|.++ .+. .+..+++|++|++++|+++ .+...+ ..+++|+.|
T Consensus        20 ~~~~L~L~~n~I~~-Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IE--NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccc-cc--chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            57899999999873 43  355 5789999999999998 343 5788999999999999999 565545 468999999


Q ss_pred             EccCcccc
Q 041065          131 HIQLNRLD  138 (148)
Q Consensus       131 ~l~~N~l~  138 (148)
                      ++++|++.
T Consensus        94 ~L~~N~I~  101 (175)
T PF14580_consen   94 YLSNNKIS  101 (175)
T ss_dssp             E-TTS---
T ss_pred             ECcCCcCC
Confidence            99999987

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.73  E-value=5.9e-10  Score=89.77  Aligned_cols=69  Identities=29%  Similarity=0.521  Sum_probs=35.1

Q ss_pred             CCCCcEEEcccCccccCCCccccCCCCCceeecCCCccc-ccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065           76 FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFF-GNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus        76 l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~-g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      ..+|+.|++|.|+++ .+|..+.++++|+.|++.+|+++ .-||+.||+|..|+++..++|++. -+|+.+|
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglc  336 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC  336 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhh
Confidence            344444555555554 45555555555555555555443 124555555555555555555555 5555444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.66  E-value=2.5e-09  Score=88.70  Aligned_cols=88  Identities=25%  Similarity=0.371  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      ..+++.|+|++|.+. .+|...+.++..|+.|+||+|.++ .+|..+.++..|++|...+|++. .+| ++..++.|+++
T Consensus       382 ~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l  457 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL  457 (1081)
T ss_pred             ccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence            368999999999987 566546788999999999999998 88999999999999999999998 788 78899999999


Q ss_pred             EccCcccc-ccCC
Q 041065          131 HIQLNRLD-GSWR  142 (148)
Q Consensus       131 ~l~~N~l~-g~iP  142 (148)
                      |++.|+++ +.+|
T Consensus       458 DlS~N~L~~~~l~  470 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLP  470 (1081)
T ss_pred             ecccchhhhhhhh
Confidence            99999887 3444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.65  E-value=9.1e-09  Score=82.22  Aligned_cols=85  Identities=21%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|+|+.|.++..-.. .+.+++.|+.|++|+|.+....++.+...++|++|+|++|+++..-+..|..|..|+.|+|
T Consensus       270 kme~l~L~~N~l~~vn~g-~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEG-WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             ccceeecccchhhhhhcc-cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            345555555555432222 5555566666666666655555555555556666666666665333334555555666666


Q ss_pred             cCcccc
Q 041065          133 QLNRLD  138 (148)
Q Consensus       133 ~~N~l~  138 (148)
                      +.|.++
T Consensus       349 s~Nsi~  354 (873)
T KOG4194|consen  349 SHNSID  354 (873)
T ss_pred             cccchH
Confidence            665544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.64  E-value=2.3e-08  Score=53.83  Aligned_cols=36  Identities=33%  Similarity=0.523  Sum_probs=17.7

Q ss_pred             CCceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065          102 NLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       102 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555555 34444555555555555555554

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.64  E-value=5.5e-09  Score=83.45  Aligned_cols=87  Identities=23%  Similarity=0.145  Sum_probs=43.3

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      ++.|+++.|.+...-++ .....+.|++|+|++|+++...+..|.-|..|+.|+|+.|++...--..|..+++|+.|||+
T Consensus       295 L~~L~lS~NaI~rih~d-~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHID-SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhhhccchhhhheeecc-hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence            44455555555543333 44445555555555555554344445555555555555555542222344455555555555


Q ss_pred             CccccccC
Q 041065          134 LNRLDGSW  141 (148)
Q Consensus       134 ~N~l~g~i  141 (148)
                      +|.+++.|
T Consensus       374 ~N~ls~~I  381 (873)
T KOG4194|consen  374 SNELSWCI  381 (873)
T ss_pred             CCeEEEEE
Confidence            55555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.63  E-value=4.9e-09  Score=84.60  Aligned_cols=87  Identities=21%  Similarity=0.345  Sum_probs=43.3

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCcccc-CCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFG-TIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      ++.|.+.+|.+.. +.. .+..++.|+.+++..|++.. -+|+.+..+..|..||||+|++. ..|..+..-.++.+|+|
T Consensus        57 LEHLs~~HN~L~~-vhG-ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   57 LEHLSMAHNQLIS-VHG-ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNL  133 (1255)
T ss_pred             hhhhhhhhhhhHh-hhh-hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEc
Confidence            3444444554442 222 44555555555555555522 24555555555555555555555 45555555555555555


Q ss_pred             cCccccccCCCC
Q 041065          133 QLNRLDGSWRMC  144 (148)
Q Consensus       133 ~~N~l~g~iP~~  144 (148)
                      ++|++. .||..
T Consensus       134 S~N~Ie-tIPn~  144 (1255)
T KOG0444|consen  134 SYNNIE-TIPNS  144 (1255)
T ss_pred             ccCccc-cCCch
Confidence            555555 55543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.63  E-value=3.1e-09  Score=81.54  Aligned_cols=87  Identities=26%  Similarity=0.437  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccc----------------------cCCCc-cccCCCCCceeec
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFF----------------------GTIPP-QISNLSNLRYIYL  108 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~----------------------g~~p~-~~~~l~~L~~L~l  108 (148)
                      .+++-|+|++|-+. ++|. +++.+..|+.||++.|+|.                      +.+++ .+.+|.+|..|||
T Consensus       435 ~kLt~L~L~NN~Ln-~LP~-e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLN-DLPE-EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             hcceeeecccchhh-hcch-hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            45666777777665 5665 6777777777777777654                      23333 3778899999999


Q ss_pred             CCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065          109 GSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       109 s~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  143 (148)
                      .+|.+. .+|+.++++++|++|++.+|.|.  .|.
T Consensus       513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR  544 (565)
T ss_pred             CCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence            999998 89999999999999999999997  554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.57  E-value=3.7e-08  Score=82.03  Aligned_cols=63  Identities=21%  Similarity=0.153  Sum_probs=45.8

Q ss_pred             CCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCC
Q 041065           78 HLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCT  145 (148)
Q Consensus        78 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~  145 (148)
                      +|+.|++++|.++ .+|..   +.+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+|.+|..+
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            4555555565555 24432   235677788888887 788888899999999999999998877654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.56  E-value=9e-09  Score=79.05  Aligned_cols=65  Identities=28%  Similarity=0.428  Sum_probs=52.8

Q ss_pred             CeEEEEcCCCCccc----------------------eecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065           53 RVINISLPNRGVNG----------------------TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS  110 (148)
Q Consensus        53 ~l~~L~l~~n~l~~----------------------~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~  110 (148)
                      +++.|+++.|.+..                      .++...+.+|.+|..|||.+|.+. .+|+.+++|++|++|++++
T Consensus       459 ~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~g  537 (565)
T KOG0472|consen  459 RLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDG  537 (565)
T ss_pred             hhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecC
Confidence            57788888776542                      222223788999999999999998 8999999999999999999


Q ss_pred             CcccccCCcc
Q 041065          111 NQFFGNIPAE  120 (148)
Q Consensus       111 n~l~g~~p~~  120 (148)
                      |.|.  .|..
T Consensus       538 Npfr--~Pr~  545 (565)
T KOG0472|consen  538 NPFR--QPRH  545 (565)
T ss_pred             CccC--CCHH
Confidence            9998  5543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.53  E-value=8.3e-08  Score=51.63  Aligned_cols=37  Identities=38%  Similarity=0.557  Sum_probs=31.4

Q ss_pred             CCCcEEEcccCccccCCCccccCCCCCceeecCCCccc
Q 041065           77 PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFF  114 (148)
Q Consensus        77 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~  114 (148)
                      ++|++|++++|+++ .+|+.+.+|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            47899999999998 67878999999999999999988

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.44  E-value=3.9e-08  Score=81.78  Aligned_cols=88  Identities=24%  Similarity=0.466  Sum_probs=78.9

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      ++++|++++|.+. .+|. .+..+.+|+.|+++.|.+. ..|....++.+|+++.|..|++. ..|.++..+.+|+.|++
T Consensus        46 ~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL  121 (1081)
T ss_pred             eeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence            4899999999876 6776 7889999999999999997 78888999999999999999998 89999999999999999


Q ss_pred             cCccccccCCCCC
Q 041065          133 QLNRLDGSWRMCT  145 (148)
Q Consensus       133 ~~N~l~g~iP~~~  145 (148)
                      +.|+|. .+|..+
T Consensus       122 S~N~f~-~~Pl~i  133 (1081)
T KOG0618|consen  122 SFNHFG-PIPLVI  133 (1081)
T ss_pred             chhccC-CCchhH
Confidence            999988 888765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.40  E-value=3.7e-08  Score=75.44  Aligned_cols=84  Identities=24%  Similarity=0.360  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC-CcccccCCc-cccCCCCCcEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS-NQFFGNIPA-EVGLLSHLEVL  130 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~-n~l~g~~p~-~~~~l~~L~~L  130 (148)
                      ..++|+|..|.++ .+|...|..++.|+.||||+|.++-.-|..|..+.+|..|-+-+ |+++ .+|. .|++|.+|+-|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            5788999999998 45555899999999999999999977888999998877766554 8888 5554 67777777666


Q ss_pred             EccCcccc
Q 041065          131 HIQLNRLD  138 (148)
Q Consensus       131 ~l~~N~l~  138 (148)
                      .+.-|++.
T Consensus       146 llNan~i~  153 (498)
T KOG4237|consen  146 LLNANHIN  153 (498)
T ss_pred             hcChhhhc
Confidence            66655554

>PLN03210 Resistant to P

Probab=98.39  E-value=1e-06  Score=76.81  Aligned_cols=80  Identities=21%  Similarity=0.340  Sum_probs=34.9

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|++.++.+. .++. .+..+++|+.|+|+++.....+| .+..+++|+.|++++|.....+|..++.+++|+.|++
T Consensus       612 ~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             CCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            3455555555443 2332 34444444555544443322333 2444444444444444333344444444444444444


Q ss_pred             cCc
Q 041065          133 QLN  135 (148)
Q Consensus       133 ~~N  135 (148)
                      ++|
T Consensus       689 ~~c  691 (1153)
T PLN03210        689 SRC  691 (1153)
T ss_pred             CCC
Confidence            443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.38  E-value=1.2e-06  Score=76.45  Aligned_cols=90  Identities=18%  Similarity=0.131  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|+++.....+|  .+..+++|+.|++++|.....+|..+.++++|+.|++++|..-+.+|..+ ++++|+.|+
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~  710 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN  710 (1153)
T ss_pred             CCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence            568888998876555666  47788899999999887666888888899999999999875555788766 788899999


Q ss_pred             ccCccccccCCCC
Q 041065          132 IQLNRLDGSWRMC  144 (148)
Q Consensus       132 l~~N~l~g~iP~~  144 (148)
                      +++|...+.+|..
T Consensus       711 Lsgc~~L~~~p~~  723 (1153)
T PLN03210        711 LSGCSRLKSFPDI  723 (1153)
T ss_pred             CCCCCCccccccc
Confidence            9888766666653

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.33  E-value=1.9e-07  Score=71.64  Aligned_cols=85  Identities=22%  Similarity=0.204  Sum_probs=58.5

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|++|.+++.-+. .|.++.++++|.|..|++.-.-..-|.++..|+.|+|.+|+++-..|..|..+.+|..|+
T Consensus       274 ~~L~~lnlsnN~i~~i~~~-aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~  352 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDG-AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN  352 (498)
T ss_pred             ccceEeccCCCccchhhhh-hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence            4677777777777755554 677777777777777777633334466677777777777777766677777777777777


Q ss_pred             ccCccc
Q 041065          132 IQLNRL  137 (148)
Q Consensus       132 l~~N~l  137 (148)
                      |-.|.|
T Consensus       353 l~~Np~  358 (498)
T KOG4237|consen  353 LLSNPF  358 (498)
T ss_pred             hccCcc
Confidence            766654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.32  E-value=1.3e-06  Score=72.99  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=20.5

Q ss_pred             CCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065          102 NLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       102 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  143 (148)
                      +|+.|++++|+++ .+|..+.  .+|+.|++++|+|+ .+|.
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~  300 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPA  300 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcc
Confidence            4555555555555 3454432  35666666666665 3443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.32  E-value=1.2e-06  Score=73.19  Aligned_cols=82  Identities=17%  Similarity=0.293  Sum_probs=54.6

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|++++|.++ .+|. .+  .++|+.|++++|.++ .+|..+.  .+|+.|+|++|++. .+|..+.  .+|+.|++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~-~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELK-SLPE-NL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCC-cCCh-hh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            5777888888777 4554 33  246777777777776 4565443  36777777777777 6666553  46777777


Q ss_pred             cCccccccCCCCC
Q 041065          133 QLNRLDGSWRMCT  145 (148)
Q Consensus       133 ~~N~l~g~iP~~~  145 (148)
                      ++|+++ .+|..+
T Consensus       270 s~N~L~-~LP~~l  281 (754)
T PRK15370        270 FHNKIS-CLPENL  281 (754)
T ss_pred             cCCccC-cccccc
Confidence            777777 566544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.32  E-value=4.4e-08  Score=65.25  Aligned_cols=87  Identities=23%  Similarity=0.358  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCCCccceecCCCCC-CCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFS-SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.++|++|.+. .+|. .|. .++.++.+++++|.++ .+|.++..++.|+.++++.|.|. ..|..+..|.+|-.|
T Consensus        53 ~el~~i~ls~N~fk-~fp~-kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPK-KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             ceEEEEecccchhh-hCCH-HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            47888999999988 4554 444 4668999999999998 78999999999999999999998 788888888899999


Q ss_pred             EccCccccccCCC
Q 041065          131 HIQLNRLDGSWRM  143 (148)
Q Consensus       131 ~l~~N~l~g~iP~  143 (148)
                      +..+|... +||-
T Consensus       129 ds~~na~~-eid~  140 (177)
T KOG4579|consen  129 DSPENARA-EIDV  140 (177)
T ss_pred             cCCCCccc-cCcH
Confidence            99888876 6663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.32  E-value=3.2e-07  Score=71.09  Aligned_cols=88  Identities=23%  Similarity=0.340  Sum_probs=72.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCC-CCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFP-HLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~-~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .++.+++.+|.+. .++. ....+. +|+.|+++.|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|+
T Consensus       117 ~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ceeEEecCCcccc-cCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            5788888888887 4553 455563 8999999999997 67677889999999999999998 7887777888999999


Q ss_pred             ccCccccccCCCCC
Q 041065          132 IQLNRLDGSWRMCT  145 (148)
Q Consensus       132 l~~N~l~g~iP~~~  145 (148)
                      +++|+++ .+|..+
T Consensus       193 ls~N~i~-~l~~~~  205 (394)
T COG4886         193 LSGNKIS-DLPPEI  205 (394)
T ss_pred             ccCCccc-cCchhh
Confidence            9999998 888753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.25  E-value=3.6e-07  Score=68.42  Aligned_cols=85  Identities=22%  Similarity=0.310  Sum_probs=39.9

Q ss_pred             CeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc----CCcc
Q 041065           53 RVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN----IPAE  120 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~p~~  120 (148)
                      +++.|++++|.+++.    +.. .+..++.|++|++++|.+++.    ++..+..+++|++|++++|.+++.    +...
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            455555555555421    111 233444555555555555432    222233344556666665555422    2223


Q ss_pred             ccCCCCCcEEEccCcccc
Q 041065          121 VGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       121 ~~~l~~L~~L~l~~N~l~  138 (148)
                      +..+++|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            344555666666655554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.23  E-value=2.9e-07  Score=68.80  Aligned_cols=63  Identities=22%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             CCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065           73 FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        73 ~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      +..+++|+.||||+|.++ .+-..-.++-+.+.|.|+.|.+. .+ ..++++.+|..||+++|++.
T Consensus       325 La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchh
Confidence            334444444444444443 11111122333444444444443 11 23556667778888888765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.16  E-value=4.8e-07  Score=67.72  Aligned_cols=62  Identities=24%  Similarity=0.296  Sum_probs=29.6

Q ss_pred             CCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc----CCccccCCCCCcEEEccCcccc
Q 041065           77 PHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        77 ~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      ++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            4555555555555422    122233444555555555555421    2223334445666666655554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.15  E-value=2.4e-07  Score=73.90  Aligned_cols=88  Identities=25%  Similarity=0.418  Sum_probs=51.6

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCC----------------------CceeecCCC
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSN----------------------LRYIYLGSN  111 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~----------------------L~~L~ls~n  111 (148)
                      ++.|.+++|+++ .+|. .++.+..|..||.+.|.+. .+|..++.+.+                      |..||+|.|
T Consensus       145 Lkvli~sNNkl~-~lp~-~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScN  221 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPE-EIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCN  221 (722)
T ss_pred             ceeEEEecCccc-cCCc-ccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccC
Confidence            555566666655 3444 4555556666666666554 34444443333                      556666777


Q ss_pred             cccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065          112 QFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus       112 ~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      +++ .||..|.+|+.|++|-|.+|.+. +=|..||
T Consensus       222 kis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  222 KIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             cee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence            766 66777777777777777777666 4444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.08  E-value=1.6e-06  Score=73.60  Aligned_cols=88  Identities=25%  Similarity=0.385  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCC--ccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           53 RVINISLPNRG--VNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        53 ~l~~L~l~~n~--l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++|-+.+|.  +. .++...|..++.|++|||++|.--+.+|..++.|-+|++|++++..++ .+|..+++|..|.+|
T Consensus       546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            57788787775  33 333224777999999999998777789999999999999999999998 899999999999999


Q ss_pred             EccCccccccCC
Q 041065          131 HIQLNRLDGSWR  142 (148)
Q Consensus       131 ~l~~N~l~g~iP  142 (148)
                      ++..+.....+|
T Consensus       624 nl~~~~~l~~~~  635 (889)
T KOG4658|consen  624 NLEVTGRLESIP  635 (889)
T ss_pred             cccccccccccc
Confidence            998766443443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.05  E-value=2.2e-07  Score=74.08  Aligned_cols=62  Identities=21%  Similarity=0.321  Sum_probs=47.4

Q ss_pred             CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCcccc---CCCCCcEEEccCcc
Q 041065           72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG---LLSHLEVLHIQLNR  136 (148)
Q Consensus        72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~---~l~~L~~L~l~~N~  136 (148)
                      ++..| .|..||+|.|+++ .+|-.|.+|+.|++|-|.+|.+. .-|..+.   ...=.++|+..-.+
T Consensus       207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            45544 4788999999998 89999999999999999999998 5566553   33335666665553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.02  E-value=1.6e-05  Score=66.69  Aligned_cols=13  Identities=23%  Similarity=0.335  Sum_probs=6.7

Q ss_pred             CCceeecCCCccc
Q 041065          102 NLRYIYLGSNQFF  114 (148)
Q Consensus       102 ~L~~L~ls~n~l~  114 (148)
                      +|+.|++++|+++
T Consensus       303 ~L~~LdLS~N~L~  315 (788)
T PRK15387        303 GLQELSVSDNQLA  315 (788)
T ss_pred             ccceeECCCCccc
Confidence            4555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.00  E-value=1.6e-06  Score=73.47  Aligned_cols=83  Identities=27%  Similarity=0.366  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      ...++.|||++|.--+.+|. .++.|-+|++|++++..+. .+|..+.+|..|.+|++..+.....+|..+..|.+|++|
T Consensus       570 m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             CcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            35788999998877778887 8899999999999999998 889999999999999999887665667777778999999


Q ss_pred             EccCc
Q 041065          131 HIQLN  135 (148)
Q Consensus       131 ~l~~N  135 (148)
                      .+..-
T Consensus       648 ~l~~s  652 (889)
T KOG4658|consen  648 RLPRS  652 (889)
T ss_pred             Eeecc
Confidence            88653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.00  E-value=1.5e-06  Score=67.26  Aligned_cols=82  Identities=32%  Similarity=0.549  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+. .+|. .+..++.|+.|+++.|.++ .+|...+.++.|+.|++++|+++ .+|..+..+..|+.+.+
T Consensus       141 nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL  216 (394)
T ss_pred             hcccccccccchh-hhhh-hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence            6899999999987 4543 6889999999999999998 77777768899999999999999 88888777777999999


Q ss_pred             cCcccc
Q 041065          133 QLNRLD  138 (148)
Q Consensus       133 ~~N~l~  138 (148)
                      ++|+..
T Consensus       217 ~~N~~~  222 (394)
T COG4886         217 SNNSII  222 (394)
T ss_pred             cCCcce
Confidence            999543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.96  E-value=2.7e-06  Score=63.68  Aligned_cols=81  Identities=19%  Similarity=0.263  Sum_probs=55.1

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.+||++|.++ .+.. +..-+|.++.|++|+|.+. . -..+..+++|+.||||+|.++ .+-..--++-+++.|.|
T Consensus       285 ~LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~-~-v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIR-T-VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhh-hhhhccceeEEecccccee-e-ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            3567778887776 4444 6667777888888888775 2 223667777888888888777 44444445667777777


Q ss_pred             cCcccc
Q 041065          133 QLNRLD  138 (148)
Q Consensus       133 ~~N~l~  138 (148)
                      ++|.+.
T Consensus       360 a~N~iE  365 (490)
T KOG1259|consen  360 AQNKIE  365 (490)
T ss_pred             hhhhHh
Confidence            777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.70  E-value=4.1e-06  Score=56.02  Aligned_cols=93  Identities=22%  Similarity=0.370  Sum_probs=70.6

Q ss_pred             eCCCCCeEEEEcCCCCccceecC--CCCCCCCCCcEEEcccCccccCCCccccC-CCCCceeecCCCcccccCCccccCC
Q 041065           48 CNDAGRVINISLPNRGVNGTLHD--FSFSSFPHLAYLDLTWNGFFGTIPPQISN-LSNLRYIYLGSNQFFGNIPAEVGLL  124 (148)
Q Consensus        48 c~~~~~l~~L~l~~n~l~~~~p~--~~~~~l~~L~~L~ls~n~l~g~~p~~~~~-l~~L~~L~ls~n~l~g~~p~~~~~l  124 (148)
                      |.....+..++|+++.+- .+++  ..+....+|+.++|++|.|. .+|+.|.. .+.++.++|++|.++ .+|.++..+
T Consensus        23 cedakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam   99 (177)
T KOG4579|consen   23 CEDAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAM   99 (177)
T ss_pred             hHHHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhh
Confidence            443344566777777653 2222  03456677888999999998 67777654 468999999999999 899999999


Q ss_pred             CCCcEEEccCccccccCCCC
Q 041065          125 SHLEVLHIQLNRLDGSWRMC  144 (148)
Q Consensus       125 ~~L~~L~l~~N~l~g~iP~~  144 (148)
                      +.|+.|+++.|.|. ..|.-
T Consensus       100 ~aLr~lNl~~N~l~-~~p~v  118 (177)
T KOG4579|consen  100 PALRSLNLRFNPLN-AEPRV  118 (177)
T ss_pred             HHhhhcccccCccc-cchHH
Confidence            99999999999988 55543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.64  E-value=3.9e-06  Score=69.05  Aligned_cols=81  Identities=20%  Similarity=0.338  Sum_probs=58.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCc-cccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPP-QISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      ..++.|+|++|.++. +.  .+..+++|++|||++|.+. .+|. ....+. |+.|.+.+|.++ .+ ..+.+|.+|+.|
T Consensus       187 ~ale~LnLshNk~~~-v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~L  259 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTK-VD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGL  259 (1096)
T ss_pred             HHhhhhccchhhhhh-hH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhcc
Confidence            357888889888873 32  5778888999999999887 5553 233343 788888888876 22 346778888888


Q ss_pred             EccCccccc
Q 041065          131 HIQLNRLDG  139 (148)
Q Consensus       131 ~l~~N~l~g  139 (148)
                      |+++|-+++
T Consensus       260 DlsyNll~~  268 (1096)
T KOG1859|consen  260 DLSYNLLSE  268 (1096)
T ss_pred             chhHhhhhc
Confidence            888887664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.62  E-value=3.8e-05  Score=60.20  Aligned_cols=81  Identities=23%  Similarity=0.312  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      ..++.+++.+|.+.....  .+..+++|++|++++|.++...+  +..++.|+.|++++|.++ .+ ..+..+.+|+.++
T Consensus        95 ~~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD  168 (414)
T ss_pred             cceeeeeccccchhhccc--chhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence            567888888888874322  26778889999999998874433  566777889999999887 34 3355588888889


Q ss_pred             ccCcccc
Q 041065          132 IQLNRLD  138 (148)
Q Consensus       132 l~~N~l~  138 (148)
                      +++|.+.
T Consensus       169 l~~n~i~  175 (414)
T KOG0531|consen  169 LSYNRIV  175 (414)
T ss_pred             CCcchhh
Confidence            9988877

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.48  E-value=0.00022  Score=50.61  Aligned_cols=82  Identities=22%  Similarity=0.260  Sum_probs=55.2

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEVL  130 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L  130 (148)
                      +...+||++|.+. .++  .|..++.|+.|.+.+|.++...|.--..+++|+.|.|.+|.+. .+-  ..+..++.|++|
T Consensus        43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            4567788888765 333  4677788888888888887444443344577888888888776 222  235566777887


Q ss_pred             EccCcccc
Q 041065          131 HIQLNRLD  138 (148)
Q Consensus       131 ~l~~N~l~  138 (148)
                      .+-+|..+
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            77777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.38  E-value=8.1e-05  Score=33.75  Aligned_cols=20  Identities=30%  Similarity=0.238  Sum_probs=11.2

Q ss_pred             CcEEEccCccccccCCCCCcC
Q 041065          127 LEVLHIQLNRLDGSWRMCTCT  147 (148)
Q Consensus       127 L~~L~l~~N~l~g~iP~~~~~  147 (148)
                      |++|++++|+|+ .||+.|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.25  E-value=1.5e-05  Score=65.75  Aligned_cols=79  Identities=22%  Similarity=0.323  Sum_probs=60.5

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCcc-ccCCCCCcEEEc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE-VGLLSHLEVLHI  132 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L~~L~l  132 (148)
                      +..++.+.|.+. .+.. ++.-++.++.|+|++|+++..  +.+..++.|++|||++|.+. .+|.. ...+ .|+.|.+
T Consensus       166 L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             HhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence            455666777765 3443 677789999999999999743  36788999999999999998 77763 2223 4999999


Q ss_pred             cCcccc
Q 041065          133 QLNRLD  138 (148)
Q Consensus       133 ~~N~l~  138 (148)
                      ++|.++
T Consensus       240 rnN~l~  245 (1096)
T KOG1859|consen  240 RNNALT  245 (1096)
T ss_pred             cccHHH
Confidence            999776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.21  E-value=0.00011  Score=57.63  Aligned_cols=84  Identities=23%  Similarity=0.245  Sum_probs=64.0

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .+..+.+..|.+.....  .+..+.+|+.+++..|.+.. +...+..+++|++|++++|.++. + ..+..++.|+.|++
T Consensus        73 ~l~~l~l~~n~i~~~~~--~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILN--HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELNL  147 (414)
T ss_pred             hHHhhccchhhhhhhhc--ccccccceeeeeccccchhh-cccchhhhhcchheecccccccc-c-cchhhccchhhhee
Confidence            34555567776664222  47889999999999999983 44337789999999999999984 3 23667788999999


Q ss_pred             cCccccccCC
Q 041065          133 QLNRLDGSWR  142 (148)
Q Consensus       133 ~~N~l~g~iP  142 (148)
                      ++|.++ .+.
T Consensus       148 ~~N~i~-~~~  156 (414)
T KOG0531|consen  148 SGNLIS-DIS  156 (414)
T ss_pred             ccCcch-hcc
Confidence            999988 443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=4.1e-05  Score=59.68  Aligned_cols=64  Identities=23%  Similarity=0.303  Sum_probs=38.7

Q ss_pred             CCCCCCcEEEcccCccccCCC--ccccCCCCCceeecCCCcccc-cCCcc-----ccCCCCCcEEEccCcccc
Q 041065           74 SSFPHLAYLDLTWNGFFGTIP--PQISNLSNLRYIYLGSNQFFG-NIPAE-----VGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        74 ~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L~ls~n~l~g-~~p~~-----~~~l~~L~~L~l~~N~l~  138 (148)
                      .-+..|+.|||++|++- ..+  ...+.++.|..|+++.+.++. .+|+.     ...+++|++|++..|++.
T Consensus       243 ~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  243 KILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            34556666777776664 222  235566777777777776653 12332     244567888888888774

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.18  E-value=0.00014  Score=32.96  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=11.7

Q ss_pred             CceeecCCCcccccCCccccC
Q 041065          103 LRYIYLGSNQFFGNIPAEVGL  123 (148)
Q Consensus       103 L~~L~ls~n~l~g~~p~~~~~  123 (148)
                      |++||+++|+++ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            566666666666 56655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.11  E-value=0.00028  Score=51.58  Aligned_cols=80  Identities=23%  Similarity=0.281  Sum_probs=53.3

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccC--ccccCCCccccCCCCCceeecCCCcccccCCcc---ccCCCCCc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWN--GFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE---VGLLSHLE  128 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n--~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~---~~~l~~L~  128 (148)
                      +..+.+.+.+++. +.  .+-.|++|+.|+++.|  .+++.++...-.+++|+++++++|++.  ++++   +..+.+|.
T Consensus        45 le~ls~~n~gltt-~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   45 LELLSVINVGLTT-LT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLK  119 (260)
T ss_pred             hhhhhhhccceee-cc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchh
Confidence            4444555555542 21  4667888899999999  555555555566789999999999886  2343   34556777


Q ss_pred             EEEccCcccc
Q 041065          129 VLHIQLNRLD  138 (148)
Q Consensus       129 ~L~l~~N~l~  138 (148)
                      .|++.++..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            8888776544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.00014  Score=54.63  Aligned_cols=86  Identities=21%  Similarity=0.267  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCCccc--eecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCc
Q 041065           52 GRVINISLPNRGVNG--TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLE  128 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~  128 (148)
                      .+|+.++|.+|.++.  .+.. .+.+||.|+.|+++.|++...|-..-..+.+|+.|-|.+..+.- .....+..++.++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            368889999998873  2222 45688999999999999875443222356788888888877653 2334566777788


Q ss_pred             EEEccCcccc
Q 041065          129 VLHIQLNRLD  138 (148)
Q Consensus       129 ~L~l~~N~l~  138 (148)
                      .|+++.|.+.
T Consensus       150 elHmS~N~~r  159 (418)
T KOG2982|consen  150 ELHMSDNSLR  159 (418)
T ss_pred             hhhhccchhh
Confidence            8888888543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.00026  Score=55.29  Aligned_cols=86  Identities=20%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEV  129 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~  129 (148)
                      .+++.|.++.++++..--...+..+|+|+.|+|..|...+.-......+..|+.|||++|++- .++  ...+.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence            355555555555552211112344555555555555321111122233445555555555554 233  23444555555


Q ss_pred             EEccCcccc
Q 041065          130 LHIQLNRLD  138 (148)
Q Consensus       130 L~l~~N~l~  138 (148)
                      |+++.+.++
T Consensus       276 Lnls~tgi~  284 (505)
T KOG3207|consen  276 LNLSSTGIA  284 (505)
T ss_pred             hhccccCcc
Confidence            555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=4.3e-05  Score=56.74  Aligned_cols=82  Identities=21%  Similarity=0.252  Sum_probs=52.5

Q ss_pred             eeCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCC-ccccCCCCCceeecCCCcccccCCcc-----
Q 041065           47 PCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIP-PQISNLSNLRYIYLGSNQFFGNIPAE-----  120 (148)
Q Consensus        47 ~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~ls~n~l~g~~p~~-----  120 (148)
                      .|..+..+++|.|+-|.++.. .  .+..++.|++|+|..|.|..... .-+.++++|+.|-|..|.-.|.-+..     
T Consensus        36 ic~kMp~lEVLsLSvNkIssL-~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~V  112 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKISSL-A--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKV  112 (388)
T ss_pred             HHHhcccceeEEeeccccccc-h--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHH
Confidence            465666777788877777632 2  36677777788888877753211 12457777777777777777665543     


Q ss_pred             ccCCCCCcEEE
Q 041065          121 VGLLSHLEVLH  131 (148)
Q Consensus       121 ~~~l~~L~~L~  131 (148)
                      +.-|++|+.||
T Consensus       113 LR~LPnLkKLD  123 (388)
T KOG2123|consen  113 LRVLPNLKKLD  123 (388)
T ss_pred             HHHcccchhcc
Confidence            34466666654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.52  E-value=4.4e-05  Score=55.35  Aligned_cols=83  Identities=18%  Similarity=0.136  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.||++.|.+.. +-. .|..++.+..||++.|.+. ..|..++++..+..+++..|.++ ..|.+++.+++++.++
T Consensus        42 kr~tvld~~s~r~vn-~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVN-LGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ceeeeehhhhhHHHh-hcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            579999999998763 222 5777888999999999987 78999999999999999999998 8999999999999999


Q ss_pred             ccCcccc
Q 041065          132 IQLNRLD  138 (148)
Q Consensus       132 l~~N~l~  138 (148)
                      +-.|.|.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9998876

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.45  E-value=0.0013  Score=55.01  Aligned_cols=41  Identities=17%  Similarity=0.155  Sum_probs=19.7

Q ss_pred             ccCCCCCceeecCCCcccccCC---c----cccCCCCCcEEEccCcccc
Q 041065           97 ISNLSNLRYIYLGSNQFFGNIP---A----EVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        97 ~~~l~~L~~L~ls~n~l~g~~p---~----~~~~l~~L~~L~l~~N~l~  138 (148)
                      +.+|++|+.||+|...... .+   .    .-..|++|++||.+++.+.
T Consensus       216 LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence            4455566666666544331 11   1    1122556666666655444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.41  E-value=0.0023  Score=46.85  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=46.3

Q ss_pred             CCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCC--cccccCCccccCCCCCcEEEccCcccc
Q 041065           73 FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSN--QFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        73 ~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n--~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      ...+..|+.+.+.+..++.  -..+..|++|++|.+|.|  +.++.++.....+++|+++++++|++.
T Consensus        39 ~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3345556666666666652  124668899999999999  555555555556699999999999986

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.32  E-value=0.0023  Score=27.01  Aligned_cols=13  Identities=38%  Similarity=0.577  Sum_probs=4.7

Q ss_pred             CCcEEEccCcccc
Q 041065          126 HLEVLHIQLNRLD  138 (148)
Q Consensus       126 ~L~~L~l~~N~l~  138 (148)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.15  E-value=0.003  Score=52.85  Aligned_cols=83  Identities=22%  Similarity=0.294  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCCCccce-ecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcE
Q 041065           52 GRVINISLPNRGVNGT-LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEV  129 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~  129 (148)
                      +++++|.+.+..+... +.. -..++++|..||+|+.+++..  .++++|++|+.|.+-+=.|.. .--..+.+|++|++
T Consensus       148 PsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             cccceEEecCceecchhHHH-HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            6789999888776432 222 456899999999999998733  578899999999888766652 11235778999999


Q ss_pred             EEccCccc
Q 041065          130 LHIQLNRL  137 (148)
Q Consensus       130 L~l~~N~l  137 (148)
                      ||+|....
T Consensus       225 LDIS~~~~  232 (699)
T KOG3665|consen  225 LDISRDKN  232 (699)
T ss_pred             eecccccc
Confidence            99997644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.08  E-value=0.0082  Score=42.76  Aligned_cols=61  Identities=21%  Similarity=0.302  Sum_probs=47.0

Q ss_pred             CCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065           76 FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        76 l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      +.....+||+.|.+. .+ +.|..+++|.+|.+++|+++..-|.--..+++|+.|.|.+|.+.
T Consensus        41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            345678999999985 22 35778899999999999999444443344578999999999876

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.89  E-value=0.0059  Score=28.49  Aligned_cols=18  Identities=28%  Similarity=0.307  Sum_probs=8.3

Q ss_pred             CCCcEEEccCccccccCCC
Q 041065          125 SHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       125 ~~L~~L~l~~N~l~g~iP~  143 (148)
                      ++|+.|+|++|+++ .||+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34444444444444 4443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.89  E-value=0.0059  Score=28.49  Aligned_cols=18  Identities=28%  Similarity=0.307  Sum_probs=8.3

Q ss_pred             CCCcEEEccCccccccCCC
Q 041065          125 SHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       125 ~~L~~L~l~~N~l~g~iP~  143 (148)
                      ++|+.|+|++|+++ .||+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34444444444444 4443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.55  E-value=0.0019  Score=49.22  Aligned_cols=84  Identities=23%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             CeEEEEcCCCCccc----eecCCCCCCCCCCcEEEcccCccccCCCccc-----cCCCCCceeecCCCcccc----cCCc
Q 041065           53 RVINISLPNRGVNG----TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-----SNLSNLRYIYLGSNQFFG----NIPA  119 (148)
Q Consensus        53 ~l~~L~l~~n~l~~----~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~-----~~l~~L~~L~ls~n~l~g----~~p~  119 (148)
                      +++.|+|..|-++.    .+.. .+..+++|+.|+++++.+...-...|     ...++|+.+.+.+|.++-    .+-.
T Consensus       214 ~LevLdl~DNtft~egs~~Lak-aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~  292 (382)
T KOG1909|consen  214 HLEVLDLRDNTFTLEGSVALAK-ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA  292 (382)
T ss_pred             cceeeecccchhhhHHHHHHHH-HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence            45555555554431    1111 34444555555555554432211111     113455555555555541    1111


Q ss_pred             cccCCCCCcEEEccCccc
Q 041065          120 EVGLLSHLEVLHIQLNRL  137 (148)
Q Consensus       120 ~~~~l~~L~~L~l~~N~l  137 (148)
                      .+...+.|+.|+|++|.+
T Consensus       293 ~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  293 CMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcchhhHHhcCCcccc
Confidence            233345555555555555

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.49  E-value=0.031  Score=44.07  Aligned_cols=60  Identities=12%  Similarity=0.155  Sum_probs=35.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccC-ccccCCCccccCCCCCceeecCCC-cccccCCcc
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWN-GFFGTIPPQISNLSNLRYIYLGSN-QFFGNIPAE  120 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n-~l~g~~p~~~~~l~~L~~L~ls~n-~l~g~~p~~  120 (148)
                      ..++.|+++++.+. .+|.  +  ..+|+.|.++++ .++ .+|..+  .++|++|++++| .+. .+|..
T Consensus        52 ~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s  113 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPES  113 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccc
Confidence            35678888888765 2331  1  235888888763 333 455444  256788888877 444 45543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.40  E-value=0.017  Score=43.20  Aligned_cols=66  Identities=29%  Similarity=0.363  Sum_probs=43.5

Q ss_pred             CCCCCCCCcEEEcccCccccCCCcc----ccCCCCCceeecCCCcccccCCc-cc-------------cCCCCCcEEEcc
Q 041065           72 SFSSFPHLAYLDLTWNGFFGTIPPQ----ISNLSNLRYIYLGSNQFFGNIPA-EV-------------GLLSHLEVLHIQ  133 (148)
Q Consensus        72 ~~~~l~~L~~L~ls~n~l~g~~p~~----~~~l~~L~~L~ls~n~l~g~~p~-~~-------------~~l~~L~~L~l~  133 (148)
                      .+..+|+|+.++||.|.|....|+.    +..-+.|.+|.+++|.+. ++-. .+             .+-+.|+++...
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            4567788888888888887666654    345577888888888764 2221 12             234567777777


Q ss_pred             Ccccc
Q 041065          134 LNRLD  138 (148)
Q Consensus       134 ~N~l~  138 (148)
                      .|++.
T Consensus       166 rNRle  170 (388)
T COG5238         166 RNRLE  170 (388)
T ss_pred             cchhc
Confidence            77665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.26  E-value=0.0059  Score=46.66  Aligned_cols=85  Identities=25%  Similarity=0.353  Sum_probs=52.5

Q ss_pred             CeEEEEcCCCCccc----eecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCcccccCC----cc
Q 041065           53 RVINISLPNRGVNG----TLHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGNIP----AE  120 (148)
Q Consensus        53 ~l~~L~l~~n~l~~----~~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~~p----~~  120 (148)
                      .+..+.+..|++..    .+.. .+..+++|+.|||..|.|+-.    +...+..+++|+.|+++++.++..--    ..
T Consensus       186 ~leevr~~qN~I~~eG~~al~e-al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAE-ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             ccceEEEecccccCchhHHHHH-HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            45556666665431    1111 456778888888888877532    23445667788888888887763211    11


Q ss_pred             c-cCCCCCcEEEccCcccc
Q 041065          121 V-GLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       121 ~-~~l~~L~~L~l~~N~l~  138 (148)
                      + ...++|++|.+.+|.++
T Consensus       265 l~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HhccCCCCceeccCcchhH
Confidence            2 23567888888888765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.88  E-value=0.025  Score=26.25  Aligned_cols=20  Identities=40%  Similarity=0.600  Sum_probs=15.0

Q ss_pred             CCCCceeecCCCcccccCCcc
Q 041065          100 LSNLRYIYLGSNQFFGNIPAE  120 (148)
Q Consensus       100 l~~L~~L~ls~n~l~g~~p~~  120 (148)
                      +++|++|+|++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            467888888888888 66654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.88  E-value=0.025  Score=26.25  Aligned_cols=20  Identities=40%  Similarity=0.600  Sum_probs=15.0

Q ss_pred             CCCCceeecCCCcccccCCcc
Q 041065          100 LSNLRYIYLGSNQFFGNIPAE  120 (148)
Q Consensus       100 l~~L~~L~ls~n~l~g~~p~~  120 (148)
                      +++|++|+|++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            467888888888888 66654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=0.0025  Score=47.61  Aligned_cols=90  Identities=21%  Similarity=0.291  Sum_probs=69.4

Q ss_pred             eCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCC
Q 041065           48 CNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLS  125 (148)
Q Consensus        48 c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~  125 (148)
                      |.....++.|+.-++++.. +.  ....|+.|++|.||-|.++..-|  +..+++|+.|+|-.|.+. .+-  ..+.+++
T Consensus        15 ~sdl~~vkKLNcwg~~L~D-Is--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlp   88 (388)
T KOG2123|consen   15 CSDLENVKKLNCWGCGLDD-IS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLP   88 (388)
T ss_pred             hhHHHHhhhhcccCCCccH-HH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence            4333467788888888773 22  45689999999999999984443  788999999999999987 333  2567889


Q ss_pred             CCcEEEccCccccccCCC
Q 041065          126 HLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       126 ~L~~L~l~~N~l~g~iP~  143 (148)
                      +|+.|-|..|...|.-+.
T Consensus        89 sLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             hhhhHhhccCCcccccch
Confidence            999999999988776543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.90  E-value=0.027  Score=42.13  Aligned_cols=87  Identities=15%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccc---cCCCc-------cccCCCCCceeecCCCccccc
Q 041065           51 AGRVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFF---GTIPP-------QISNLSNLRYIYLGSNQFFGN  116 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~---g~~p~-------~~~~l~~L~~L~ls~n~l~g~  116 (148)
                      +..++.++|++|.+...    +.. .+.+-.+|+..+++.-...   ..++.       .+-++++|+..+||+|-|...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            45789999999987632    222 3555677888777764321   12332       345789999999999999888


Q ss_pred             CCccc----cCCCCCcEEEccCcccc
Q 041065          117 IPAEV----GLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       117 ~p~~~----~~l~~L~~L~l~~N~l~  138 (148)
                      .|..+    ..-+.|.+|.+++|-+-
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC
Confidence            87754    55678999999998653

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.78  E-value=0.082  Score=41.75  Aligned_cols=66  Identities=14%  Similarity=0.114  Sum_probs=45.8

Q ss_pred             CCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC-CcccccCCccccCCCCCcEEEccCc-cccccCCCCCc
Q 041065           73 FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS-NQFFGNIPAEVGLLSHLEVLHIQLN-RLDGSWRMCTC  146 (148)
Q Consensus        73 ~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~L~l~~N-~l~g~iP~~~~  146 (148)
                      +..+..++.|+++++.++ .+|.   -..+|+.|.+++ ++++ .+|..+.  .+|+.|++++| .+. .+|+.+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccccc
Confidence            444578999999999887 5662   235799999987 4554 6776542  47888888877 443 6666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.07  E-value=0.0016  Score=47.51  Aligned_cols=73  Identities=19%  Similarity=0.168  Sum_probs=62.0

Q ss_pred             CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCcC
Q 041065           72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTCT  147 (148)
Q Consensus        72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~  147 (148)
                      .+..+...+.||++.|++. .+-..|..++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.++++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k  109 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK  109 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence            5777888999999999986 45556778899999999999998 88999999999999999999887 77776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.03  E-value=0.039  Score=41.82  Aligned_cols=64  Identities=27%  Similarity=0.230  Sum_probs=46.6

Q ss_pred             CCCCCcEEEcccCcccc--CCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065           75 SFPHLAYLDLTWNGFFG--TIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        75 ~l~~L~~L~ls~n~l~g--~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      ..+.++.+||.+|.++.  .+-.-+.+|+.|+.|+++.|.++..|-..=..+.+|++|.|.+..+.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            45678999999999973  23334568999999999999998544322134568899988776554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.29  E-value=0.011  Score=27.04  Aligned_cols=14  Identities=36%  Similarity=0.413  Sum_probs=6.0

Q ss_pred             CCCceeecCCCccc
Q 041065          101 SNLRYIYLGSNQFF  114 (148)
Q Consensus       101 ~~L~~L~ls~n~l~  114 (148)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555544

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.26  E-value=0.68  Score=29.63  Aligned_cols=76  Identities=22%  Similarity=0.289  Sum_probs=29.1

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC-ccccCCCCCcEEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP-AEVGLLSHLEVLH  131 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~  131 (148)
                      .++.+.+..+ +. .++...|..++.++.+.+.. .+...-...|..+++|+.+++..+ +. .++ ..+.+. .|+.+.
T Consensus        36 ~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~  109 (129)
T PF13306_consen   36 SLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEIN  109 (129)
T ss_dssp             T-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE
T ss_pred             cccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-CceEEE
Confidence            3455555543 33 22322455555566666644 222112223444566666666544 33 222 234443 555555


Q ss_pred             ccC
Q 041065          132 IQL  134 (148)
Q Consensus       132 l~~  134 (148)
                      +..
T Consensus       110 ~~~  112 (129)
T PF13306_consen  110 IPS  112 (129)
T ss_dssp             -TT
T ss_pred             ECC
Confidence            543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.17  E-value=0.097  Score=24.56  Aligned_cols=17  Identities=29%  Similarity=0.325  Sum_probs=10.3

Q ss_pred             CCcEEEccCccccccCCC
Q 041065          126 HLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       126 ~L~~L~l~~N~l~g~iP~  143 (148)
                      +|+.|++++|+++ ++|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4556666666666 5654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.06  E-value=0.069  Score=40.54  Aligned_cols=59  Identities=19%  Similarity=0.121  Sum_probs=42.2

Q ss_pred             CCCCCCcEEEcccCc-cccCCCccccCCCCCceeecCCCcccccCCcc---ccCCCCCcEEEccC
Q 041065           74 SSFPHLAYLDLTWNG-FFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE---VGLLSHLEVLHIQL  134 (148)
Q Consensus        74 ~~l~~L~~L~ls~n~-l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~---~~~l~~L~~L~l~~  134 (148)
                      ..+++|.+|||+.+. ++...-..|.+++.|++|.++.+..  .+|..   +...++|.+|++.+
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            467888999998874 4433445677888899998888863  46654   46667888888754

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.86  E-value=0.47  Score=22.20  Aligned_cols=15  Identities=33%  Similarity=0.623  Sum_probs=10.9

Q ss_pred             CCCCcEEEccCcccc
Q 041065          124 LSHLEVLHIQLNRLD  138 (148)
Q Consensus       124 l~~L~~L~l~~N~l~  138 (148)
                      +++|+.|+++.|+++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356777888888776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.67  E-value=2.2  Score=27.14  Aligned_cols=79  Identities=18%  Similarity=0.213  Sum_probs=44.1

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.+.+.. .+. .++...|.+++.|+.+.+..+ +...-...|..+.+|+.+.+.. .+...-...|..+++|+.+++
T Consensus        13 ~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            577777764 444 454447888888999988775 5422234577777899998876 333122345666888888888


Q ss_pred             cCc
Q 041065          133 QLN  135 (148)
Q Consensus       133 ~~N  135 (148)
                      ..+
T Consensus        89 ~~~   91 (129)
T PF13306_consen   89 PSN   91 (129)
T ss_dssp             TTT
T ss_pred             Ccc
Confidence            654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.15  E-value=0.72  Score=21.75  Aligned_cols=13  Identities=31%  Similarity=0.368  Sum_probs=8.0

Q ss_pred             CCceeecCCCccc
Q 041065          102 NLRYIYLGSNQFF  114 (148)
Q Consensus       102 ~L~~L~ls~n~l~  114 (148)
                      +|++|+|++|.+.
T Consensus         3 ~L~~LdL~~N~i~   15 (28)
T smart00368        3 SLRELDLSNNKLG   15 (28)
T ss_pred             ccCEEECCCCCCC
Confidence            4666666666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.97  E-value=0.11  Score=36.99  Aligned_cols=81  Identities=12%  Similarity=0.109  Sum_probs=44.6

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCC-Ccccc-CCCCCceeecCCC-cccccCCccccCCCCCcE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTI-PPQIS-NLSNLRYIYLGSN-QFFGNIPAEVGLLSHLEV  129 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~-p~~~~-~l~~L~~L~ls~n-~l~g~~p~~~~~l~~L~~  129 (148)
                      .|+.++-++..+...=-. .+..++.++.|.+.++.--+.. -..++ -.++|+.|++++| +++..--..+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHH-HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            467777777665432111 4566667777766666432111 11122 2367888888876 455333344566677776


Q ss_pred             EEccC
Q 041065          130 LHIQL  134 (148)
Q Consensus       130 L~l~~  134 (148)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            66543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=80.66  E-value=0.1  Score=39.68  Aligned_cols=57  Identities=21%  Similarity=0.192  Sum_probs=37.4

Q ss_pred             CCcEEEcccCccccC-CCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccC
Q 041065           78 HLAYLDLTWNGFFGT-IPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQL  134 (148)
Q Consensus        78 ~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~  134 (148)
                      .|+++||+...++-. +-.-+..+++|+.|.+.++++...|-..+.+-..|+.|+++.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence            477777777776522 122245567777777777777776666676667777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-07
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-07
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-06

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43  SKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSN 102
           S  +PCN   RV           G     +F +   + +LD+++N   G IP +I ++  
Sbjct: 605 STRNPCNITSRVY----------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 103 LRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
           L  + LG N   G+IP EVG L  L +L +  N+LDG
Sbjct: 655 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43  SKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSN 102
           S  +PCN   RV           G     +F +   + +LD+++N   G IP +I ++  
Sbjct: 608 STRNPCNITSRVY----------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 103 LRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
           L  + LG N   G+IP EVG L  L +L +  N+LDG
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 64  VNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGL 123
           V+G + DF  S    L  LD ++N   GT+PP IS+L NL  I    N+  G IP   G 
Sbjct: 113 VSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 124 LSHL-EVLHIQLNRLDG 139
            S L   + I  NRL G
Sbjct: 172 FSKLFTSMTISRNRLTG 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 2e-24
 Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 20/150 (13%)

Query: 1   FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCN------DAGRV 54
           F  + S     E   L+ +K  L + N  LL          SS  +PC          +V
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLPDKN--LLPDW-------SSNKNPCTFDGVTCRDDKV 52

Query: 55  INISLPNRGVNGTLHDF--SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQ 112
            +I L ++ +N        S  S   L  L L+ +   G++       ++L  + L  N 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNS 111

Query: 113 FFGNIPAEVGL--LSHLEVLHIQLNRLDGS 140
             G +     L   S L+ L++  N LD  
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 3e-15
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 71  FSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130
              S   +L +LD++ N F   IP  + + S L+++ +  N+  G+    +   + L++L
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 131 HIQLNRLDGS 140
           +I  N+  G 
Sbjct: 253 NISSNQFVGP 262

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 4e-15
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GL 123
            G + DF   +   L  LDL+ N F+G +PP   + S L  + L SN F G +P +    
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 124 LSHLEVLHIQLNRLDGS 140
           +  L+VL +  N   G 
Sbjct: 342 MRGLKVLDLSFNEFSGE 358

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 6e-15
 Identities = 28/71 (39%), Positives = 37/71 (52%)

Query: 70  DFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEV 129
           +   +    L  L L  NGF G IPP +SN S L  ++L  N   G IP+ +G LS L  
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 130 LHIQLNRLDGS 140
           L + LN L+G 
Sbjct: 447 LKLWLNMLEGE 457

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
                  L +LD++ N   G     IS  + L+ + + SNQF G IP     L  L+ L 
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275

Query: 132 IQLNRLDGS 140
           +  N+  G 
Sbjct: 276 LAENKFTGE 284

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 3e-14
 Identities = 25/69 (36%), Positives = 36/69 (52%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
             S+  +L ++ L+ N   G IP  I  L NL  + L +N F GNIPAE+G    L  L 
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 132 IQLNRLDGS 140
           +  N  +G+
Sbjct: 545 LNTNLFNGT 553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 5e-14
 Identities = 25/69 (36%), Positives = 35/69 (50%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           + S+   L  L L++N   GTIP  + +LS LR + L  N   G IP E+  +  LE L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 132 IQLNRLDGS 140
           +  N L G 
Sbjct: 473 LDFNDLTGE 481

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 6e-14
 Identities = 20/69 (28%), Positives = 30/69 (43%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           S  S   L  L L  N   G IP ++  +  L  + L  N   G IP+ +   ++L  + 
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 132 IQLNRLDGS 140
           +  NRL G 
Sbjct: 497 LSNNRLTGE 505

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 23/69 (33%), Positives = 34/69 (49%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
                  L  L L +N   G IP  +SN +NL +I L +N+  G IP  +G L +L +L 
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 132 IQLNRLDGS 140
           +  N   G+
Sbjct: 521 LSNNSFSGN 529

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
             +        ++T   + G   P   N  ++ ++ +  N   G IP E+G + +L +L+
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 132 IQLNRLDGS 140
           +  N + GS
Sbjct: 663 LGHNDISGS 671

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLS-NLRYIYLGSNQFFGNIPAEVG- 122
           +G L   +      L  LDL++N F G +P  ++NLS +L  + L SN F G I   +  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 123 -LLSHLEVLHIQLNRLDGS 140
              + L+ L++Q N   G 
Sbjct: 391 NPKNTLQELYLQNNGFTGK 409

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 57  ISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI---SNLSNLRYIYLGSNQF 113
           +++ +  ++             L  LDL+ N   G              L+++ +  N+ 
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 114 FGNIPAEVGLLSHLEVLHIQLNRLDGS 140
            G++   V    +LE L +  N     
Sbjct: 191 SGDVD--VSRCVNLEFLDVSSNNFSTG 215

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
                 +LA L L+ N F G IP ++ +  +L ++ L +N F G IPA +   S      
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GK 564

Query: 132 IQLNRLDGS 140
           I  N + G 
Sbjct: 565 IAANFIAGK 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL 130
           + S+   L  L+++ N F G IPP    L +L+Y+ L  N+F G IP  + G    L  L
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 131 HIQLNRLDGS 140
            +  N   G+
Sbjct: 300 DLSGNHFYGA 309

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQ-ISNLSNLRYIYLGSNQFFGNIPAEVG-LLSHLEV 129
            F S   L  L L+ N F G +P   +  +  L+ + L  N+F G +P  +  L + L  
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372

Query: 130 LHIQLNRLDGS 140
           L +  N   G 
Sbjct: 373 LDLSSNNFSGP 383

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           +F +   + +LD+++N   G IP +I ++  L  + LG N   G+IP EVG L  L +L 
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 132 IQLNRLDGS 140
           +  N+LDG 
Sbjct: 687 LSSNKLDGR 695

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
              S P+L  L+L  N   G+IP ++ +L  L  + L SN+  G IP  +  L+ L  + 
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 132 IQLNRLDG 139
           +  N L G
Sbjct: 711 LSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 12/80 (15%), Positives = 20/80 (25%)

Query: 61  NRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE 120
           N                   +       F G    Q++ LS      + S  + G+    
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 121 VGLLSHLEVLHIQLNRLDGS 140
                 +  L +  N L G 
Sbjct: 628 FDNNGSMMFLDMSYNMLSGY 647

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
                  L +LDL  N F GTIP  +   S      + +N   G     +      +  H
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECH 588

Query: 132 IQLNRLDGS 140
              N L+  
Sbjct: 589 GAGNLLEFQ 597

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP 118
                  L  LDL+ N   G IP  +S L+ L  I L +N   G IP
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.0 bits (214), Expect = 3e-21
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 35/164 (21%)

Query: 9   SNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKT------SPCNDAGRVINISLPNR 62
           + ++  ALL+ K  L N   + LSS     T+  ++T             RV N+ L   
Sbjct: 4   NPQDKQALLQIKKDLGNP--TTLSSW-LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 63  GVNGT-----------------LHDF---------SFSSFPHLAYLDLTWNGFFGTIPPQ 96
            +                    +            + +    L YL +T     G IP  
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 97  ISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGS 140
           +S +  L  +    N   G +P  +  L +L  +    NR+ G+
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 63.7 bits (156), Expect = 5e-13
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNL-RYIYLGSNQFFGNIPAEVGLLSHLEVL 130
           S SS P+L  +    N   G IP    + S L   + +  N+  G IP     L+ L  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202

Query: 131 HIQLNRLDGS 140
            +  N L+G 
Sbjct: 203 DLSRNMLEGD 212

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 78  HLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRL 137
           +LA++DL+ N   G       +  N + I+L  N    ++  +VGL  +L  L ++ NR+
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI 256

Query: 138 DGS 140
            G+
Sbjct: 257 YGT 259

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 6e-12
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
            F S  +   + L  N     +  ++    NL  + L +N+ +G +P  +  L  L  L+
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 132 IQLNRLDGS 140
           +  N L G 
Sbjct: 275 VSFNNLCGE 283

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 7e-10
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
                 +L  LDL  N  +GT+P  ++ L  L  + +  N   G IP   G L   +V  
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297

Query: 132 IQLNR 136
              N+
Sbjct: 298 YANNK 302

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 19/144 (13%)

Query: 1   FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLP 60
             ++ ++E  ++  AL +   +L   N S          N +         G    +SL 
Sbjct: 20  IKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDM-WGAQPGVSLN 78

Query: 61  NRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGN---- 116
           + G               +  L L   G  G +P  I  L+ L  + LGS+    N    
Sbjct: 79  SNG--------------RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 117 IPAEVGLLSHLEVLHIQLNRLDGS 140
            P  +      E           +
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKT 148

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 8/58 (13%), Positives = 24/58 (41%)

Query: 82  LDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
            +  +   + T   +  NL +L  + + +      +P  +  L  ++++++  NR   
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF--------FGN 116
                D  + +   L  +++        +P  +  L  ++ I +  N+            
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 117 IPAEVGLLSHLEVLHIQLNRL 137
             A+  +   +++++I  N L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNL 317

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 70  DFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLG------SNQFFGNIPAEVGL 123
           DF  ++ P+L  +DL++N  F   P Q  N S L+   +        N+     P  + L
Sbjct: 506 DFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 124 LSHLEVLHIQLNRLDG 139
              L  L I  N +  
Sbjct: 565 CPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 71  FSFSSFPHLAYLDLTWN-------GFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGL 123
           F   S   ++ +D ++N         F  + P      N+  I L +NQ           
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 124 LSHLEVLHIQLNRLDG 139
            S L  +++  N L  
Sbjct: 456 GSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 72  SFSSFPHLAYLDLTWNGFF-GTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130
                  +  + + +N      +   +  +  L  +    NQ  G +P   G    L  L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358

Query: 131 HIQLNRLDG 139
           ++  N++  
Sbjct: 359 NLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           +   F      D   N      P  I+   +L  + +GSN     +  +  +  ++ VL 
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK--ITPNISVLD 593

Query: 132 IQLNRL 137
           I+ N  
Sbjct: 594 IKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 72  SFSSFPHLAYLDLTWNGF--------FGTIPPQISNLSNLRYIYLGSNQFF-GNIPAEVG 122
              + P +  +++  N                       ++ IY+G N      +   + 
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 123 LLSHLEVLHIQLNRLDGS 140
            +  L +L    N+L+G 
Sbjct: 328 KMKKLGMLECLYNQLEGK 345

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL 130
           S      L  L+  +N   G   P   +   L  + L  NQ    IPA   G    +E L
Sbjct: 325 SLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENL 382

Query: 131 HIQLNRL 137
               N+L
Sbjct: 383 SFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 10/77 (12%)

Query: 73  FSSFPHLAYLDLTWNGFFGTIPP--QISNLSNLRYIYLGSNQF-------FGNIPAEVGL 123
                 +  L    N     IP      ++S +  I    N+        F  +      
Sbjct: 373 CGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 124 LSHLEVLHIQLNRLDGS 140
             ++  +++  N++   
Sbjct: 432 GINVSSINLSNNQISKF 448

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 2/74 (2%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           S         +    N     +   +  L+ LR  Y+G++ F      E     + E   
Sbjct: 178 SSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

Query: 132 IQLNRLDGSWRMCT 145
            Q    D  W    
Sbjct: 237 -QYKTEDLKWDNLK 249

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 10/82 (12%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGF-------FGTIPPQISNLSNLRYIYLGSNQFFGNIPA 119
                 FS+   L+ ++L  N                  N   L  I L  N+    +  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSD 505

Query: 120 EVGL--LSHLEVLHIQLNRLDG 139
           +     L +L  + +  N    
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSK 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 20/74 (27%), Positives = 26/74 (35%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            L  +SF SFP L  LDL+             +LS+L  + L  N            LS 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 127 LEVLHIQLNRLDGS 140
           L+ L      L   
Sbjct: 102 LQKLVAVETNLASL 115

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF-FGNIPAEVGLLS 125
           +L   +FS    L  L              I +L  L+ + +  N      +P     L+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 126 HLEVLHIQLNRLDGS 140
           +LE L +  N++   
Sbjct: 150 NLEHLDLSSNKIQSI 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
           T+ D ++ S  HL+ L LT N          S LS+L+ +              +G L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 127 LEVLHIQLNRLDG 139
           L+ L++  N +  
Sbjct: 126 LKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130
           +F     L +LD   +         +  +L NL Y+ +               LS LEVL
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 131 HIQLNRLDGSW 141
            +  N    ++
Sbjct: 451 KMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 73  FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVLH 131
           F S  +L YLD++            + LS+L  + +  N F  N   ++   L +L  L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 132 IQLNRLDG 139
           +   +L+ 
Sbjct: 477 LSQCQLEQ 484

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 12/65 (18%), Positives = 20/65 (30%)

Query: 76  FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLN 135
                 LDL++N           +   L+ + L   +           LSHL  L +  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 136 RLDGS 140
            +   
Sbjct: 87  PIQSL 91

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 19/75 (25%), Positives = 32/75 (42%)

Query: 66  GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
                  F+   +L +LDL+        P   ++LS+L+ + +  N FF         L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 126 HLEVLHIQLNRLDGS 140
            L+VL   LN +  S
Sbjct: 519 SLQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNG--FFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG 122
           N   + FS    P L +LDL+ NG  F G         ++L+Y+ L  N     + +   
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL 393

Query: 123 LLSHLEVLHIQLNRLDGSW 141
            L  LE L  Q + L    
Sbjct: 394 GLEQLEHLDFQHSNLKQMS 412

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
              +  F+    L  L +  N F     P I + L NL ++ L   Q     P     LS
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 126 HLEVLHIQLNRLDG 139
            L+VL++  N    
Sbjct: 495 SLQVLNMSHNNFFS 508

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGF-FGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
           +L +F       L  L++  N      +P   SNL+NL ++ L SN+       ++ +L 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 126 HLEVLHIQLN 135
            + +L++ L+
Sbjct: 174 QMPLLNLSLD 183

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 71  FSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEV 129
            S      L YLDL++NG   T+      L  L ++    +         V   L +L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 130 LHIQLNRLDGS 140
           L I       +
Sbjct: 426 LDISHTHTRVA 436

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG-LLS 125
            L   +F+S   L  L+++ N FF         L++L+ +    N    +   E+    S
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 126 HLEVLHIQLNRLDGS 140
            L  L++  N    +
Sbjct: 544 SLAFLNLTQNDFACT 558

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNL-SNLRYIYLGSNQFFGNIPAE--VGL 123
           +L  F +     L  LD + N    +   ++ +  S+L ++ L  N F      +  +  
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

Query: 124 LSHLEVLHIQLNRLDGS 140
           +     L +++ R++ +
Sbjct: 568 IKDQRQLLVEVERMECA 584

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 67  TLHDFSFSSFPHLAY----LDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG 122
           +++         +      LDL+ N     I P       L  + L +N    N+     
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 123 L-LSHLEVLHIQLNRLDGS 140
             L+ LEV  + L      
Sbjct: 222 QGLAGLEVHRLVLGEFRNE 240

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 53  RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWN------GFFGTIPPQISNLSNLRYI 106
            V  + L      G L  F  S+   L  L +          +   I    + L+N+   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 107 YLGSNQFFGNIP-AEVGLLSHLEVLHIQLNRLDGSW 141
            L S         +      HLE+++ +  +     
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 6   SSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSS--KTSPCNDAGRVINISLPNRG 63
           ++E  ++  AL     +L   N    S  IN+  +  +       +  G    + L N G
Sbjct: 264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNG 323

Query: 64  VNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGL 123
                          +  L L   G  G +P  I  L+ L+ +  G++    +       
Sbjct: 324 --------------RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 124 LSHLEVLHIQLNRLDGS 140
               ++   + +R+   
Sbjct: 370 ELTPDMSEERKHRIRMH 386

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF---------FGNI 117
              + S+S+   L  ++L        +P  + +L  L+ + +  N+          +  +
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 118 PAEVGLLSHLEVLHIQLNRL 137
             +      +++ ++  N L
Sbjct: 541 ADDEDTGPKIQIFYMGYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 6e-09
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 70  DFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYL------GSNQFFGNIPAEVGL 123
           DF  ++ P+L+ +D+++N  F + P Q  N S L+   +        N+     P  +  
Sbjct: 746 DFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

Query: 124 LSHLEVLHIQLNRL 137
              L  L I  N +
Sbjct: 805 CPSLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 7e-09
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 82  LDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
            +  +   +       SNL +L  + L +      +P  +  L  L+ L+I  NR   
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 9/80 (11%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF-------FGNI 117
                        + + + L++N          +  S +  I L +N             
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 118 PAEVGLLSHLEVLHIQLNRL 137
                    L  + ++ N+L
Sbjct: 721 DGNYKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 82  LDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRL 137
            D   N      P  I+   +L  + +GSN     +  +  L   L +L I  N  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK--LTPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 4/67 (5%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG-LLSHLEVL 130
           S      L  LD   N               L  + L  NQ    IP +       +E L
Sbjct: 568 SLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGL 624

Query: 131 HIQLNRL 137
               N+L
Sbjct: 625 GFSHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 5/82 (6%)

Query: 58  SLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPP--QISNLSNLRYIYLGSNQFFG 115
           S      + T       + P +    + +N      P    +  +  L  +    N+   
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKV-- 585

Query: 116 NIPAEVGLLSHLEVLHIQLNRL 137
                 G    L  L +  N++
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 13/94 (13%), Positives = 22/94 (23%), Gaps = 21/94 (22%)

Query: 66  GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF------------ 113
             +   S  S       +L        I   I  L+ L+ IY  ++ F            
Sbjct: 415 KPIKKDSRISLKDTQIGNL--TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472

Query: 114 -------FGNIPAEVGLLSHLEVLHIQLNRLDGS 140
                  + N       L  L  + +        
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 15/73 (20%), Positives = 24/73 (32%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            L D +F+   +L  L L  N              NL  + L  N            L +
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 127 LEVLHIQLNRLDG 139
           L+ L +  N++  
Sbjct: 147 LQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 15/73 (20%), Positives = 27/73 (36%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            L   +F+ +  L  LD+ +N      P     L  L+ + L  N+            ++
Sbjct: 39  RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98

Query: 127 LEVLHIQLNRLDG 139
           L  LH+  N +  
Sbjct: 99  LTELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLL-- 124
            + +  F    +L  LDL+ NG   T       L NL+ + L +N+       E+ +   
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 125 SHLEVLHIQLNRLDG 139
           S L+ L +  N++  
Sbjct: 171 SSLKKLELSSNQIKE 185

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 15/71 (21%), Positives = 22/71 (30%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            L        P L  L+L  N          +  +NL  ++L SN              +
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 127 LEVLHIQLNRL 137
           L  L +  N L
Sbjct: 123 LITLDLSHNGL 133

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLS 125
           T   F   +   L  L+LT N          S L +L  + LG N+    +  +    L 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 126 HLEVLHIQLNRLDG 139
           ++  +++  N+   
Sbjct: 431 NIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 17/72 (23%), Positives = 26/72 (36%)

Query: 68  LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHL 127
           L         ++  L+LT N          +  S L  + +G N      P     L  L
Sbjct: 16  LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 128 EVLHIQLNRLDG 139
           +VL++Q N L  
Sbjct: 76  KVLNLQHNELSQ 87

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 70  DFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGL---LSH 126
           +    +   L  L+L+ N      P     +  L  ++L + Q   ++  ++ L    + 
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 127 LEVLHIQLNRLDG 139
           +  L +  ++L  
Sbjct: 224 IRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGF--FGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLL 124
            L   SF+  P L  L L         + P     L NL  + L +N         +  L
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 125 SHLEVLHIQLNRLDGSWR 142
             LE+L +Q N L   W+
Sbjct: 504 EKLEILDLQHNNLARLWK 521

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF--FGNIPAEVG 122
              L    +    ++  + L++N +        + + +L+ + L         + P+   
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 123 LLSHLEVLHIQLNRLDG 139
            L +L +L +  N +  
Sbjct: 478 PLRNLTILDLSNNNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 19/84 (22%), Positives = 31/84 (36%)

Query: 56  NISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG 115
           N++   +  N     +      HL  L+L  NGF         +L  L+ I LG N    
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 116 NIPAEVGLLSHLEVLHIQLNRLDG 139
              +       L+ L++Q N +  
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 14/70 (20%), Positives = 27/70 (38%)

Query: 71  FSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130
           F    + +L  LDL++N          + L  L Y +L  N         +  L ++  L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 131 HIQLNRLDGS 140
           +++ +    S
Sbjct: 302 NLKRSFTKQS 311

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 71  FSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQ--------FFGNIPAEVG 122
             F    +L  LDL+ N         +  L  L  + L  N           G     + 
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 123 LLSHLEVLHIQLNRLDG 139
            LSHL +L+++ N  D 
Sbjct: 534 GLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG-LLS 125
            +    F     L  +DL  N          +N  +L+ + L  N          G    
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 126 HLEVLHIQLNRLDGSWRMCTC 146
           +L  L ++ N  D     CTC
Sbjct: 610 NLTELDMRFNPFD-----CTC 625

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSN--LRYIYLGSNQFFGNIPAEVGLL 124
           +    +     +L  L L+ N        ++   +N  L+ + L SNQ     P     +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 125 SHLEVLHIQLNRLDGS 140
             L  L +   +L  S
Sbjct: 195 GRLFGLFLNNVQLGPS 210

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNI--------- 117
            + + SF+  P L Y  L +N         +  L N+RY+ L  +    +I         
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 118 PAEVGLLSHLEVLHIQLNRLDG 139
                 L  LE L+++ N + G
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF-FGNIPAEVGL-- 123
            + DFSF     L +L++  N   G      + L NL+Y+ L ++      +  E  +  
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 124 -LSHLEVLHIQLNRLDG 139
             S L +L++  N++  
Sbjct: 379 AHSPLHILNLTKNKISK 395

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQIS----NLSNLRYIYLGSNQFFGNIPAEVG 122
            +    F+   +L YL L+ +          +      S L  + L  N+          
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 123 LLSHLEVLHIQLNRLDGS 140
            L HLEVL + LN +   
Sbjct: 403 WLGHLEVLDLGLNEIGQE 420

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQIS---NLSNLRYIYLGSNQFFGNIPAEVGL 123
                 F +   L  L L       ++  ++      +++R + L ++Q           
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 124 L--SHLEVLHIQLNRLDG 139
           L  ++L +L +  N L+ 
Sbjct: 245 LKWTNLTMLDLSYNNLNV 262

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 9/80 (11%)

Query: 67  TLHDFSFSSFPHLAYLDL---------TWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNI 117
            L   S     ++ YL+L         +              L  L ++ +  N   G  
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 118 PAEVGLLSHLEVLHIQLNRL 137
                 L +L+ L +  +  
Sbjct: 346 SNMFTGLINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQIS-NLSNLRYIYLGSNQFFGNIPAEVGLLS 125
           TL    F++   L  L+L  N               NL  + +  N F     +    ++
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 126 HLEVLHIQLNRLDG 139
            +   H  +  L  
Sbjct: 634 WINETHTNIPELSS 647

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
           T+   +FS+ P+++ + ++ +     +      NLS + +I + + +    I  +    L
Sbjct: 45  TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104

Query: 125 SHLEVLHIQLNRL 137
             L+ L I    L
Sbjct: 105 PLLKFLGIFNTGL 117

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 67  TLHDFSFSSFP-HLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV--GL 123
           ++   +F         L L  NGF  ++     N + L  +YL  N++   I  +   G+
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 124 LSHLEVLHIQLNRL 137
            S   +L +    +
Sbjct: 204 YSGPSLLDVSQTSV 217

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL 130
           +F S   L YLD+++             L++L  + +  N F  N  + V    ++L  L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 131 HIQLNRLDG 139
            +   +L+ 
Sbjct: 479 DLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            +    F +   L  L+++ N          + L +L  +    N+   +          
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 127 LEVLHIQLNRLDGSWRMCTC 146
           L   ++  N +      C C
Sbjct: 547 LAFFNLTNNSVA-----CIC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 17/71 (23%), Positives = 30/71 (42%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
           T+ D ++    HL+ L LT N      P   S L++L  +     +        +G L  
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 127 LEVLHIQLNRL 137
           L+ L++  N +
Sbjct: 130 LKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 19/71 (26%), Positives = 27/71 (38%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            L  +SFS+F  L +LDL+              L +L  + L  N      P     L+ 
Sbjct: 46  ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 127 LEVLHIQLNRL 137
           LE L     +L
Sbjct: 106 LENLVAVETKL 116

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
              D  F     L  L +  N F       + +N +NL ++ L   Q           L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 126 HLEVLHIQLNRL 137
            L++L++  N L
Sbjct: 498 RLQLLNMSHNNL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLL 124
                   F++  +L +LDL+              L  L+ + +  N       +    L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 125 SHLEVLHIQLNRL 137
             L  L    NR+
Sbjct: 521 YSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFG-TIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
           +L  F       L  L++  N      +P   SNL+NL ++ L  N        ++  L 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 126 HLEVLHIQLN 135
               +++ L+
Sbjct: 178 ENPQVNLSLD 187

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 71  FSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEV 129
           +S      L +LDL++NG    +      L  L+++    +             L  L  
Sbjct: 370 YSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 130 LHIQLNRLDGSWR 142
           L I        + 
Sbjct: 429 LDISYTNTKIDFD 441

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 22/62 (35%)

Query: 76  FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLN 135
                 +DL++N          SN S L+++ L   +           L HL  L +  N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 136 RL 137
            +
Sbjct: 91  PI 92

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQ-ISNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
            +   +F     L +LD   +            +L  L Y+ +       +       L+
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 126 HLEVLHIQLNRL 137
            L  L +  N  
Sbjct: 449 SLNTLKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 68  LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQ--FFGNIPAEVGLLS 125
           L  F     P L  L LT N   G+I  +   L +L Y+ L  N   F G         +
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 126 HLEVLHIQLNRL 137
            L  L +  N  
Sbjct: 377 SLRHLDLSFNGA 388

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWN--GFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG 122
           N     F   + P L+YLDL+ N   F G         ++LR++ L  N     + A   
Sbjct: 338 NKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396

Query: 123 LLSHLEVLHIQLNRLDGSW 141
            L  L+ L  Q + L    
Sbjct: 397 GLEELQHLDFQHSTLKRVT 415

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 12/67 (17%), Positives = 22/67 (32%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
            F     L  L L       T+P  I  L+ L  + L        +P+ +  L    ++ 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 132 IQLNRLD 138
           +  +   
Sbjct: 308 VPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 71  FSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130
              ++ P    L+L         P Q   LS+L+++ + +      +P  +   + LE L
Sbjct: 75  LEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETL 132

Query: 131 HIQLNRL 137
            +  N L
Sbjct: 133 TLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           +    P L  LDL         PP     + L+ + L        +P ++  L+ LE L 
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 132 IQLN 135
           ++  
Sbjct: 284 LRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           S ++  +L  L +  +     + P I +L  L  + L       N P   G  + L+ L 
Sbjct: 201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 132 IQ 133
           ++
Sbjct: 260 LK 261

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG--------- 122
           +   F  L  L L  N     +P  I++L+ LR + + +      +P  +          
Sbjct: 122 TMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 123 LLSHLEVLHIQLNRL 137
            L +L+ L ++   +
Sbjct: 181 GLVNLQSLRLEWTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
                 +L  L L W G   ++P  I+NL NL+ + + ++     +   +  L  LE L 
Sbjct: 178 EHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235

Query: 132 IQ 133
           ++
Sbjct: 236 LR 237

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            +   +F  F  L  LDLT       +P  +  LS L+ + L +N+F             
Sbjct: 268 NISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 127 LEVLHIQLNRLDGS 140
           L  L I+ N     
Sbjct: 327 LTHLSIKGNTKRLE 340

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 16/71 (22%), Positives = 25/71 (35%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            + + + S    L +L     G        + N   L  +YLGSN        +      
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 127 LEVLHIQLNRL 137
           L+VL  Q N +
Sbjct: 155 LKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQ-ISNLSNLRYIYLGSNQ--FFGNIPAEVGL 123
            L   S S+FP L +L +  N     +    + NL NLR + L  +          ++  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 124 LSHLEVLHIQLNRLDGSWR 142
           LSHL+ L++  N       
Sbjct: 375 LSHLQSLNLSYNEPLSLKT 393

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            +H+ +F S   L  L LT N         +S    L++++             +     
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 127 LEVLHIQLNRL 137
           LE L++  N +
Sbjct: 131 LESLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 11/70 (15%), Positives = 21/70 (30%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
           ++      +   L  L L  N       P+      L+ +   +N        ++  L  
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 127 LEVLHIQLNR 136
              L + LN 
Sbjct: 179 ATNLSLNLNG 188

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 13/71 (18%), Positives = 25/71 (35%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
           T+ + +FS   +L +LDLT    +        +   L  + L +N         +     
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 127 LEVLHIQLNRL 137
           L+ L      +
Sbjct: 107 LKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 66  GTLHDFSFSSFPHLAYLDLTWN--GFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGL 123
             L      +  +L  LDL+ +          Q+ NLS+L+ + L  N+           
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 124 LSHLEVLHIQLNRLDGSW 141
              LE+L +   RL    
Sbjct: 399 CPQLELLDLAFTRLKVKD 416

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPP-QISNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
           +L   +F   P L  LDL +             NL  L+ + L  +    +       L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 126 HLEVLHIQLNRLDGSW 141
            L+ L++Q N      
Sbjct: 450 ALQHLNLQGNHFPKGN 465

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL 130
                  L  L L+ N F        SN  +L ++ +  N     +       L +L  L
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 131 HIQLNRLDGS 140
            +  + ++ S
Sbjct: 356 DLSHDDIETS 365

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 71  FSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130
           F       +  ++L  + FF          S L+ + L +      +P+ +  LS L+ L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKL 306

Query: 131 HIQLNRLDG 139
            +  N+ + 
Sbjct: 307 VLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGL---LSHLE 128
            F +   L  L+L+ +    +       L  L+++ L  N F      +      L  LE
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 129 VLHIQLNRLDG 139
           +L +    L  
Sbjct: 480 ILVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 68  LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSH 126
             +    +  HL  L+L++N               L  + L   +            L  
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426

Query: 127 LEVLHIQLNRLDG 139
           L+VL++  + LD 
Sbjct: 427 LKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTI---PPQISNLSNLRYIYLGSNQFFGNIPAEVGL 123
              +  F   P L +L+L  N F          +  L  L  + L               
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 124 LSHLEVLHIQLNRL 137
           L  +  + +  NRL
Sbjct: 499 LKMMNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
           ++   +F+S   + ++DL+ N    +    +S+L  + Y+ L SN     +P+ + +LS 
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548

Query: 127 LEVLHIQLNRLDGSWRMCTC 146
              ++++ N LD     CTC
Sbjct: 549 QRTINLRQNPLD-----CTC 563

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 39  TNVSSKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQIS 98
           T  S +     +  +  N        N  L++   +       L+ ++N          S
Sbjct: 1   TTSSDQKCIEKEVNKTYNCE------NLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS 54

Query: 99  NLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDG 139
            L NL ++ L   Q +            L+ L +  N L  
Sbjct: 55  RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           S  +   L  L L++           ++L  + ++ L  N+   +    +  L  +  L+
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529

Query: 132 IQLNRL 137
           +  N +
Sbjct: 530 LASNHI 535

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
            + D  F +  +L  L L  N     I P   + L  L  +YL  NQ    +P    +  
Sbjct: 66  EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQ-LKELPE--KMPK 121

Query: 126 HLEVLHIQLNRL 137
            L+ L +  N +
Sbjct: 122 TLQELRVHENEI 133

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
            +   S     +LA L L++N     +     +N  +LR ++L +N+    +P  +    
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHK 263

Query: 126 HLEVLHIQLNRL 137
           +++V+++  N +
Sbjct: 264 YIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF-------FGNIPA 119
            + + S ++ PHL  L L  N     +P  +++   ++ +YL +N         F     
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 120 EVGLLSHLEVLHIQLNRL 137
                +    + +  N +
Sbjct: 289 NTK-KASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGF-FGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLL 124
            +    F+    +  ++L  N      I       +  L YI +        IP   GL 
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLP 191

Query: 125 SHLEVLHIQLNRL 137
             L  LH+  N++
Sbjct: 192 PSLTELHLDGNKI 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 77  PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNR 136
             L  LDL+ N     + P+  + + + +I L +N+    I   +    +LE   ++ N 
Sbjct: 191 AKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248

Query: 137 LD 138
             
Sbjct: 249 FH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 68  LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSH 126
           +   S S       + L  N             S ++Y+ L  N+    N          
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 127 LEVLHIQLNRL 137
           LE L++Q N +
Sbjct: 171 LEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
                   S  ++  LDL+ N         ++  + L  + L SN  +     ++  LS 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 127 LEVLHIQLNRL 137
           L  L +  N +
Sbjct: 82  LRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQ--ISNLSNLRYIYLGSNQFFGNIPAEVGLL 124
            L D        + YLDL  N    T+      ++   L ++ L  N  + ++  +V + 
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VF 190

Query: 125 SHLEVLHIQLNRL 137
           + L+ L +  N+L
Sbjct: 191 AKLKTLDLSSNKL 203

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            +   +F+    L  LDL+ N    ++ P     L  L  ++L        +   +   L
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL 128

Query: 125 SHLEVLHIQLNRL 137
           + L+ L++Q N L
Sbjct: 129 AALQYLYLQDNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            +   SF +  +L  L L  N     I     + L+ L  + L  N    ++       L
Sbjct: 46  HVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104

Query: 125 SHLEVLHIQLNRL 137
             L  LH+    L
Sbjct: 105 GRLHTLHLDRCGL 117

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            L    F     L YL L  N     +P     +L NL +++L  N+   ++P      L
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGL 176

Query: 125 SHLEVLHIQLNRL 137
             L+ L +  NR+
Sbjct: 177 HSLDRLLLHQNRV 189

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
            L    F    HL  L L  N     I  +  S L  L+ +Y+  N     IP    L S
Sbjct: 68  ELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNH-LVEIPP--NLPS 123

Query: 126 HLEVLHIQLNRL 137
            L  L I  NR+
Sbjct: 124 SLVELRIHDNRI 135

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
            +       +  L  L L  N     I     S L  LR ++L +N+    +PA +  L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLK 264

Query: 126 HLEVLHIQLNRL 137
            L+V+++  N +
Sbjct: 265 LLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV----- 121
            + + S S  P L  L L  N     +P  + +L  L+ +YL +N     +         
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG 288

Query: 122 --GLLSHLEVLHIQLNRL 137
                ++   + +  N +
Sbjct: 289 FGVKRAYYNGISLFNNPV 306

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
           T+   SF     L  L+L       TI  +   NL NLR + LGS++    +  +    L
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGL 96

Query: 125 SHLEVLHIQLNRL 137
            HL  L +    L
Sbjct: 97  FHLFELRLYFCGL 109

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLS 125
           +L+   F +   L  L+L +N            L NL+ + L  N   G + +     L 
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLP 338

Query: 126 HLEVLHIQLNRL 137
            +  + +Q N +
Sbjct: 339 KVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLL 124
              L    F    HL  L L  N      P   S+L+ LR + L SN+    +     L 
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LP 525

Query: 125 SHLEVLHIQLNRL 137
           ++LE+L I  N+L
Sbjct: 526 ANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF--FGNIPAEVGL- 123
            L+  +F   P +AY+DL  N            L  L+ + L  N       IP+   + 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 124 -----LSHLEVLHIQLNRLDGSW 141
                L  L  +++  N +  S 
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSE 410

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 61  NRGVNGTLHDFSFSSFPHLAYLDLTWNGFFG-TIPPQISNLSNLRYIYLGSNQFFGNIPA 119
               +  L D  F +   L  LDL+ N      + P    L++L+ I   SNQ F  +  
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCE 165

Query: 120 EVGLLSHLEVLHIQLNRLDG 139
               L  L+   +    L  
Sbjct: 166 HE--LEPLQGKTLSFFSLAA 183

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 57  ISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFG 115
           + L ++    T+   +F + P+L  LDL  +     + P     L +L  + L       
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSD 111

Query: 116 NIPAEVGL--LSHLEVLHIQLNRL 137
            +  +     L  L  L +  N++
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 73  FSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL 130
                    L L++N +  T+       L  L+ + LGS      I  E    L +L +L
Sbjct: 20  PQVLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 131 HIQLNRL 137
            +  +++
Sbjct: 79  DLGSSKI 85

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 77  PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNR 136
             L  LDL+ N     + P+  + + + +I L +N+    I   +    +LE   ++ N 
Sbjct: 191 AKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248

Query: 137 LD 138
             
Sbjct: 249 FH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
                   S  ++  LDL+ N         ++  + L  + L SN  +     ++  LS 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 127 LEVLHIQLNRL 137
           L  L +  N +
Sbjct: 82  LRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQ--ISNLSNLRYIYLGSNQFFGNIPAEVGLL 124
            L D        + YLDL  N    T+      ++   L ++ L  N  + ++  +V + 
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VF 190

Query: 125 SHLEVLHIQLNRL 137
           + L+ L +  N+L
Sbjct: 191 AKLKTLDLSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 68  LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSH 126
           +   S S       + L  N             S ++Y+ L  N+    N          
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 127 LEVLHIQLNRL 137
           LE L++Q N +
Sbjct: 171 LEHLNLQYNFI 181

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            L++ SFS    L +L +        I       LS+L  + L  NQ F  +       L
Sbjct: 44  ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGL 102

Query: 125 SHLEVLHIQLNRLDGS 140
           ++LEVL +    LDG+
Sbjct: 103 ANLEVLTLTQCNLDGA 118

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            + D +F    HL  L+L+ N F G+I  ++  NL  L  + L  N     +  +    L
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGL 370

Query: 125 SHLEVLHIQLNRL 137
            +L+ L +  N+L
Sbjct: 371 PNLKELALDTNQL 383

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
           ++  ++F+  P L  LDL        I       LSNLRY+ L        IP     L 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTP-LI 207

Query: 126 HLEVLHIQLNRL 137
            L+ L +  N L
Sbjct: 208 KLDELDLSGNHL 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            +   SF    HL  L L+ N    TI     + L+NL  + L  N+    IP      L
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYL 135

Query: 125 SHLEVLHIQLNRL 137
           S L+ L ++ N +
Sbjct: 136 SKLKELWLRNNPI 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLS 125
            + + +F    +L YL+L          P ++ L  L  + L  N     I       L 
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLM 231

Query: 126 HLEVLHIQLNRL 137
           HL+ L +  +++
Sbjct: 232 HLQKLWMIQSQI 243

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF-FGNIPAEVGLLS 125
           +L   +FS    L  L              I +L  L+ + +  N      +P     L+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 126 HLEVLHIQLNRLD 138
           +LE L +  N++ 
Sbjct: 150 NLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 2/72 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLS 125
                S      L YLDL++NG   T+      L  L ++    +         V   L 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 126 HLEVLHIQLNRL 137
           +L  L I     
Sbjct: 422 NLIYLDISHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNG--FFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVG 122
           N   + FS    P L +LDL+ NG  F G         ++L+Y+ L  N     + +   
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 123 LLSHLEVLHIQLNRL 137
            L  LE L  Q + L
Sbjct: 394 GLEQLEHLDFQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLS 125
            L  +SF SFP L  LDL+             +LS+L  + L  N    ++       LS
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLS 100

Query: 126 HLEVLHIQLNRL 137
            L+ L      L
Sbjct: 101 SLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 73  FSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL 130
           F S  +L YLD++           I + LS+L  + +  N F  N   ++   L +L  L
Sbjct: 417 FLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 131 HIQLNRL 137
            +   +L
Sbjct: 476 DLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
           T+ D ++ S  HL+ L LT N          S LS+L+ +              +G L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 127 LEVLHIQLNRL 137
           L+ L++  N +
Sbjct: 126 LKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
              +  F+    L  L +  N F     P I + L NL ++ L   Q    +       L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSL 493

Query: 125 SHLEVLHIQLNRL 137
           S L+VL++  N+L
Sbjct: 494 SSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGF-FGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
           +L +F       L  L++  N      +P   SNL+NL ++ L SN+       ++ +L 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 126 HLEVLHIQLN 135
            + +L++ L+
Sbjct: 174 QMPLLNLSLD 183

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQI--SNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLE 128
           +F     L +LD   +     +       +L NL Y+ +            +   LS LE
Sbjct: 391 NFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLE 448

Query: 129 VLHIQLNRLDGSW 141
           VL +  N    ++
Sbjct: 449 VLKMAGNSFQENF 461

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
           TL+   F+SFPHL  L+L  N     + P   +NL NLR + L SN+    IP  V   L
Sbjct: 46  TLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGL 103

Query: 125 SHLEVLHIQLNRL 137
           S+L  L I  N++
Sbjct: 104 SNLTKLDISENKI 116

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLS 125
            + D+SF     L  L+++   +  T+ P      NL  + +        +P      L 
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLV 248

Query: 126 HLEVLHIQLNRL 137
           +L  L++  N +
Sbjct: 249 YLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            L D+ F    +L  L++  N     I  +  S L++L  + L       +IP E    L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHL 175

Query: 125 SHLEVLHIQLNRL 137
             L VL ++   +
Sbjct: 176 HGLIVLRLRHLNI 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 73  FSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL 130
           F S  +L YLD++           I + LS+L  + +  N F  N   ++   L +L  L
Sbjct: 122 FLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 131 HIQLNRLD 138
            +   +L+
Sbjct: 181 DLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNG--FFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLL 124
           +L    F     L  L L+ NG  F G         ++L+Y+ L  N     + +    L
Sbjct: 42  SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGL 100

Query: 125 SHLEVLHIQLNRL 137
             LE L  Q + L
Sbjct: 101 EQLEHLDFQHSNL 113

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 68  LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSH 126
               S      L YLDL++NG   T+      L  L ++    +         V   L +
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 127 LEVLHIQLNRL 137
           L  L I     
Sbjct: 128 LIYLDISHTHT 138

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
                 F+   +L +LDL+       + P   ++LS+L+ + +  N  F ++       L
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCL 222

Query: 125 SHLEVLHIQLNRL 137
           + L+VL   LN +
Sbjct: 223 NSLQVLDYSLNHI 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGLLS 125
           ++  ++F+  P L  LDL        I       L NL+Y+ LG      ++P     L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP-LV 218

Query: 126 HLEVLHIQLNRL 137
            LE L +  N  
Sbjct: 219 GLEELEMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            +   +F    HL  L L  N     I     + L++L  + L  N     IP+     L
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYL 146

Query: 125 SHLEVLHIQLNRL 137
           S L  L ++ N +
Sbjct: 147 SKLRELWLRNNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLS 125
            + + +F    +L YL+L          P ++ L  L  + +  N  F  I       LS
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLS 242

Query: 126 HLEVLHIQLNRL 137
            L+ L +  +++
Sbjct: 243 SLKKLWVMNSQV 254

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            +    F     L  L ++ N     +      +  L+ + L  N    ++         
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR 325

Query: 127 LEVLHIQLNRL 137
           LE L++  N +
Sbjct: 326 LENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGL-L 124
            L      SF  +  L+L        I     +    ++ +Y+G N     +P  V   +
Sbjct: 65  KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV 122

Query: 125 SHLEVLHIQLNRL 137
             L VL ++ N L
Sbjct: 123 PLLTVLVLERNDL 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 70  DFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEV 129
           +      P L  LDL+ N     +         L  +YL  N     +         L+ 
Sbjct: 294 NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKL--STHHTLKN 349

Query: 130 LHIQLNRLDGSWRM 143
           L +  N  D +   
Sbjct: 350 LTLSHNDWDCNSLR 363

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 68  LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLLSH 126
           ++         L  L L  N    T    + N   L  + L  N+    I       +  
Sbjct: 223 INVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQR 279

Query: 127 LEVLHIQLNRL 137
           LE L+I  NRL
Sbjct: 280 LERLYISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 4/75 (5%)

Query: 65  NGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-G 122
                 F   +  +   +    +     +P  +  +   +  + L   Q    I      
Sbjct: 39  QDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFA 96

Query: 123 LLSHLEVLHIQLNRL 137
               ++ L++  N +
Sbjct: 97  YAHTIQKLYMGFNAI 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 71  FSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL 130
               +  +L  LD++ N  F  +P        +R++ L S      +     +   LEVL
Sbjct: 381 EILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT--CIPQTLEVL 436

Query: 131 HIQLNRLD 138
            +  N LD
Sbjct: 437 DVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 3/74 (4%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF---FGNIPAEVGL 123
                 +S    +  + +  +  F        +L +L ++ L  N     +    A  G 
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 124 LSHLEVLHIQLNRL 137
              L+ L +  N L
Sbjct: 360 WPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 6/140 (4%)

Query: 3   ITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAG----RVINIS 58
           +     S    D +      L      L     N+   +       ++       +  + 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 59  LPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP 118
             N   +  + +        +  L +     F  +    S L  ++ I + +++ F  +P
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP 326

Query: 119 AEVG-LLSHLEVLHIQLNRL 137
                 L  LE L +  N +
Sbjct: 327 CSFSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFG-TIPPQISNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
           +L    F     L YL+L  N +    +     NL+NL+ + +G+ + F  I       L
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 125 SHLEVLHIQLNRL 137
           + L  L I+   L
Sbjct: 148 TSLNELEIKALSL 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            +      +  +L  L L  +    TI      +L +L ++ L  N    ++ +   G L
Sbjct: 40  YIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPL 97

Query: 125 SHLEVLHIQLNRLD 138
           S L+ L++  N   
Sbjct: 98  SSLKYLNLMGNPYQ 111

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            +    F     L  L ++ N     +      +  L+ + L  N    ++         
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR 319

Query: 127 LEVLHIQLNRL 137
           LE L++  N +
Sbjct: 320 LENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEVGL-L 124
            L      SF  +  L+L        I     +    ++ +Y+G N     +P  V   +
Sbjct: 59  KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV 116

Query: 125 SHLEVLHIQLNRL 137
             L VL ++ N L
Sbjct: 117 PLLTVLVLERNDL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 70  DFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEV 129
           +      P L  LDL+ N     +         L  +YL  N     +         L+ 
Sbjct: 288 NLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS-IVTLKL--STHHTLKN 343

Query: 130 LHIQLNRLDGSWRM 143
           L +  N  D +   
Sbjct: 344 LTLSHNDWDCNSLR 357

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 74  SSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ 133
               H+  L +  N    ++P     L  L    +  NQ   ++P     L  L +    
Sbjct: 58  CLPAHITTLVIPDNNL-TSLPALPPELRTL---EVSGNQL-TSLPVLPPGLLELSIFSNP 112

Query: 134 LNRL 137
           L  L
Sbjct: 113 LTHL 116

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 19/84 (22%)

Query: 74  SSFPHLAYLDLTWNGFFGTIPPQISNL-----------------SNLRYIYLGSNQFFGN 116
              P L  L ++ N    ++P   S L                 S L+ + +  NQ   +
Sbjct: 138 VLPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL-AS 195

Query: 117 IPAEVGLLSHLEVLHIQLNRLDGS 140
           +P     L  L   + +L  L   
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPAL 219

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 17/83 (20%)

Query: 74  SSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF----------------FGNI 117
           +  P L  L+++ N    ++P     L  L                            ++
Sbjct: 78  ALPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 136

Query: 118 PAEVGLLSHLEVLHIQLNRLDGS 140
           P     L  L V   QL  L   
Sbjct: 137 PVLPPGLQELSVSDNQLASLPAL 159

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
                  + +LDL+ N     +PP ++ L  L  +    N    N+   V  L  L+ L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELL 514

Query: 132 IQLNRLD 138
           +  NRL 
Sbjct: 515 LCNNRLQ 521

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           +      L  L++  N    +    ++NLS L  ++L +NQ        +G L++L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 132 IQLNRL 137
           +  N +
Sbjct: 318 LSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
             ++   L  L L  N         I  L+NL  ++L  N      P  +  LS ++   
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

Query: 132 IQLNRL 137
                +
Sbjct: 340 FANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 10/66 (15%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           +  +  +L  L L  +    +    ++NL+ +  + LG+N    ++   +  ++ L  L 
Sbjct: 105 ALQNLTNLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT 161

Query: 132 IQLNRL 137
           +  +++
Sbjct: 162 VTESKV 167

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
             ++   +  L+L  N     + P +SN++ L Y+ +  ++   ++   +  L+ L  L 
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLS 183

Query: 132 IQLNRL 137
           +  N++
Sbjct: 184 LNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 73  FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132
            S+   L  L +  N    T    + NL+NLR +YL  +      P  +  L+ +  L++
Sbjct: 84  LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139

Query: 133 QLNRL 137
             N  
Sbjct: 140 GANHN 144

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 73  FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132
                 L  +    N       P++ NL  L  IY  +N     +P     L  L V   
Sbjct: 211 PDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDN 267

Query: 133 QLNRL 137
            L  L
Sbjct: 268 YLTDL 272

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            +   +FS F  L  ++++ N     I   + SNL  L  I +        I  E    L
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103

Query: 125 SHLEVLHIQLNRL 137
            +L+ L I    +
Sbjct: 104 PNLQYLLISNTGI 116

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 10/63 (15%), Positives = 24/63 (38%)

Query: 73  FSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI 132
            S   +L  L +          P +S L++L  + +  +    +I  ++  L  +  + +
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 133 QLN 135
             N
Sbjct: 144 SYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
           + S    L  LD++ +    +I  +I+ L  +  I L  N    +I   +  L  L+ L+
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLN 165

Query: 132 IQLNRLD 138
           IQ + + 
Sbjct: 166 IQFDGVH 172

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 73  FSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVL 130
           FS    L  L +     F  I  +  + L+ L  + + ++    +   +    + ++  L
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHL 203

Query: 131 HIQLNRL 137
            + + + 
Sbjct: 204 ILHMKQH 210

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            + +       +L  L LT NG   TI     S+L +L ++ L  N    N+ +     L
Sbjct: 66  YISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPL 123

Query: 125 SHLEVLHIQLNRL 137
           S L  L++  N  
Sbjct: 124 SSLTFLNLLGNPY 136

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            +   +F   P+L YLDL+ N    T+   + S+L  L  + L +N     +       +
Sbjct: 78  FISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDM 135

Query: 125 SHLEVLHIQLNRL 137
           + L+ L++  N++
Sbjct: 136 AQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 70  DFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLLSHL 127
           +++ +   +L  L L+ N     I  +    + NLRY+ L SN     +   +   L  L
Sbjct: 57  EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114

Query: 128 EVLHIQLNRL 137
           EVL +  N +
Sbjct: 115 EVLLLYNNHI 124

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 76  FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLN 135
               + L L       ++P  +     +  + +  N    ++P     L +L+    +L+
Sbjct: 58  INQFSELQLNRLNL-SSLPDNL--PPQITVLEITQNAL-ISLPELPASLEYLDACDNRLS 113

Query: 136 RLDGSWRMCT 145
            L        
Sbjct: 114 TLPELPASLK 123

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 74  SSFPHLAYLDLTWNGFFGTIPPQISNLSNLR----YIYLGSNQFFGNIPAEVGLLSHLEV 129
                L  LD++ N    ++P       +      +     N+   +IP  +  L     
Sbjct: 177 ELPESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCT 234

Query: 130 LHIQLNRL 137
           + ++ N L
Sbjct: 235 IILEDNPL 242

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPAEV-GLL 124
            L  +SF SFP L  LDL+      TI      +LS+L  + L  N    ++       L
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGL 99

Query: 125 SHLEVLHIQLNRL 137
           S L+ L      L
Sbjct: 100 SSLQKLVAVETNL 112

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
             ++   L  LD++ N    +    ++ L+NL  +   +NQ     P  +G+L++L+ L 
Sbjct: 172 PLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227

Query: 132 IQLNRLDG 139
           +  N+L  
Sbjct: 228 LNGNQLKD 235

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQ-ISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEV 129
                 +L  L +        +  + +  L  LR + +  +     +  +       L  
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSR 84

Query: 130 LHIQLNRL 137
           L++  N L
Sbjct: 85  LNLSFNAL 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.57
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.56
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.55
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.55
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.49
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.49
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.49
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.46
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.42
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.42
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.41
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.4
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.38
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.38
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.38
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.33
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.32
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.3
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.3
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.22
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.22
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.2
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.2
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.02
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.01
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.99
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.99
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.98
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.98
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.97
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.96
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.94
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.94
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.92
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.88
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.15
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.13
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.03
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.39
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.24
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.16
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.13
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.81
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	90.61

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=6.6e-26  Score=168.99  Aligned_cols=137  Identities=26%  Similarity=0.411  Sum_probs=113.7

Q ss_pred             CCCHHHHHHHHHHHHhccCCCCCCcCCCcCCCCCcc--ccceeeCCC---CCeEEEEcCCCCccc--eecCCCCCCCCCC
Q 041065            7 SESNEEADALLKWKASLKNHNRSLLSSCINDATNVS--SKTSPCNDA---GRVINISLPNRGVNG--TLHDFSFSSFPHL   79 (148)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~c~--~~gv~c~~~---~~l~~L~l~~n~l~~--~~p~~~~~~l~~L   79 (148)
                      .|.++|++||++||+++.++.  .+.+|..+.++|.  |.||+|...   ++|+.|+++++.+.+  .+|. .+..+++|
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L   78 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHhCCCCC
Confidence            578899999999999997643  4789987778998  999999854   689999999999998  7886 78888888


Q ss_pred             cEEEccc-CccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065           80 AYLDLTW-NGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus        80 ~~L~ls~-n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      ++|++++ |.+.+.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            8888884 888888888888888888888888888777777777777888888887777777776554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=5.7e-24  Score=171.76  Aligned_cols=139  Identities=19%  Similarity=0.189  Sum_probs=122.9

Q ss_pred             CCCHHHHHHHHHHHHhccCCCCCCc-------CCCcCCCCCccc---cceeeCCCCCeEEEEcCCCCccceecCCCCCCC
Q 041065            7 SESNEEADALLKWKASLKNHNRSLL-------SSCINDATNVSS---KTSPCNDAGRVINISLPNRGVNGTLHDFSFSSF   76 (148)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~~~~~~~-------~~W~~~~~~c~~---~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l   76 (148)
                      +....|+.||.+++.++.++.|...       ++|..+.++|.|   .||+|+..++|+.|+|+++++.|.+|. .+..+
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~~L  104 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQL  104 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGGGC
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HHhcC
Confidence            3344799999999999887655422       379888889999   999998778999999999999999997 99999


Q ss_pred             CCCcEEEcccCc--------------------------------------------------------------------
Q 041065           77 PHLAYLDLTWNG--------------------------------------------------------------------   88 (148)
Q Consensus        77 ~~L~~L~ls~n~--------------------------------------------------------------------   88 (148)
                      ++|++|+|++|.                                                                    
T Consensus       105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~  184 (636)
T 4eco_A          105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK  184 (636)
T ss_dssp             TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred             ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence            999999999884                                                                    


Q ss_pred             ----------cccCCCccccCCCCCceeecCCCccccc-----------------CCcccc--CCCCCcEEEccCccccc
Q 041065           89 ----------FFGTIPPQISNLSNLRYIYLGSNQFFGN-----------------IPAEVG--LLSHLEVLHIQLNRLDG  139 (148)
Q Consensus        89 ----------l~g~~p~~~~~l~~L~~L~ls~n~l~g~-----------------~p~~~~--~l~~L~~L~l~~N~l~g  139 (148)
                                ++| +|..++++++|++|+|++|+++|.                 +|..++  ++++|++|++++|++.|
T Consensus       185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~  263 (636)
T 4eco_A          185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT  263 (636)
T ss_dssp             TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred             hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence                      445 888899999999999999999986                 999999  99999999999999999


Q ss_pred             cCCCCCcC
Q 041065          140 SWRMCTCT  147 (148)
Q Consensus       140 ~iP~~~~~  147 (148)
                      .+|+.+++
T Consensus       264 ~~p~~l~~  271 (636)
T 4eco_A          264 KLPTFLKA  271 (636)
T ss_dssp             SCCTTTTT
T ss_pred             cChHHHhc
Confidence            99998875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=2.1e-23  Score=171.45  Aligned_cols=140  Identities=23%  Similarity=0.318  Sum_probs=106.6

Q ss_pred             CeeeccCCCHHHHHHHHHHHHhccCCCCCCcCCCcCCCCCccccceeeCCCCCeEEEEcCCCCccce---ecC-------
Q 041065            1 FLITISSESNEEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGT---LHD-------   70 (148)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~c~~~gv~c~~~~~l~~L~l~~n~l~~~---~p~-------   70 (148)
                      |+.+++.+.++|++||++||+++.++.  .+.+|..+.+||.|.||+|+ .++|+.|+|+++.+.|.   ++.       
T Consensus         2 ~~~~~~~~~~~~~~all~~k~~~~~~~--~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~   78 (768)
T 3rgz_A            2 FQASPSQSLYREIHQLISFKDVLPDKN--LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG   78 (768)
T ss_dssp             ------CCHHHHHHHHHHHHTTCSCTT--SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred             CcCccccCCHHHHHHHHHHHhhCCCcc--cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence            455667778899999999999998654  58999877889999999998 78999999999998886   442       


Q ss_pred             ---------------CCCCCCCCCcEEEcccCccccCCCc--cccCCCCCceeecCCCcccccCCccc-cCCCCCcEEEc
Q 041065           71 ---------------FSFSSFPHLAYLDLTWNGFFGTIPP--QISNLSNLRYIYLGSNQFFGNIPAEV-GLLSHLEVLHI  132 (148)
Q Consensus        71 ---------------~~~~~l~~L~~L~ls~n~l~g~~p~--~~~~l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L~l  132 (148)
                                     ..+..+++|++|+|++|.++|.+|.  .++++++|++|++++|.+++.+|..+ .++++|++|++
T Consensus        79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  158 (768)
T 3rgz_A           79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL  158 (768)
T ss_dssp             CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred             ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence                           1566777777777777777777776  77777777777777777777777655 67777777777


Q ss_pred             cCccccccCCC
Q 041065          133 QLNRLDGSWRM  143 (148)
Q Consensus       133 ~~N~l~g~iP~  143 (148)
                      ++|++++.+|.
T Consensus       159 s~n~l~~~~~~  169 (768)
T 3rgz_A          159 SANSISGANVV  169 (768)
T ss_dssp             CSSCCEEETHH
T ss_pred             CCCccCCcCCh
Confidence            77777766553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=1.5e-22  Score=168.41  Aligned_cols=134  Identities=19%  Similarity=0.192  Sum_probs=116.6

Q ss_pred             CCCHHHHHHHHHHHHhccCCCCCCcCCCcCCC-----CC--ccc------------cceeeCCCCCeEEEEcCCCCccce
Q 041065            7 SESNEEADALLKWKASLKNHNRSLLSSCINDA-----TN--VSS------------KTSPCNDAGRVINISLPNRGVNGT   67 (148)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~-----~~--c~~------------~gv~c~~~~~l~~L~l~~n~l~~~   67 (148)
                      +...+|+.||++||+++.++      +|..+.     ++  |.|            .||.|+..++|+.|+|+++++.|.
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~  338 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR  338 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEE
T ss_pred             ccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCc
Confidence            44558999999999999764      564432     45  999            999998778999999999999999


Q ss_pred             ecCCCCCCCCCCcEEEc-ccCccccC------------------------------------------------------
Q 041065           68 LHDFSFSSFPHLAYLDL-TWNGFFGT------------------------------------------------------   92 (148)
Q Consensus        68 ~p~~~~~~l~~L~~L~l-s~n~l~g~------------------------------------------------------   92 (148)
                      +|. .+..+++|++|+| ++|.++|.                                                      
T Consensus       339 ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          339 VPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             ECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             Cch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence            997 9999999999999 77766554                                                      


Q ss_pred             ----------------------CCccccCCCCCceeecCCCcccc-----------------cCCcccc--CCCCCcEEE
Q 041065           93 ----------------------IPPQISNLSNLRYIYLGSNQFFG-----------------NIPAEVG--LLSHLEVLH  131 (148)
Q Consensus        93 ----------------------~p~~~~~l~~L~~L~ls~n~l~g-----------------~~p~~~~--~l~~L~~L~  131 (148)
                                            +|..++++++|++|+|++|+++|                 .+|..++  ++++|++|+
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                                  78889999999999999999998                 4999988  999999999


Q ss_pred             ccCccccccCCCCCcC
Q 041065          132 IQLNRLDGSWRMCTCT  147 (148)
Q Consensus       132 l~~N~l~g~iP~~~~~  147 (148)
                      |++|++.|.+|..+++
T Consensus       498 Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             EESCTTCCSCCGGGGG
T ss_pred             CcCCCCCccChHHHhC
Confidence            9999999999987764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=5.4e-21  Score=143.38  Aligned_cols=138  Identities=15%  Similarity=0.197  Sum_probs=117.0

Q ss_pred             ccCCCHHHHHHHHHHHHhccCCCCCCcCCC----cCCCCCccccceeeC---------CCCCeEEEEcCCCCccceecCC
Q 041065            5 ISSESNEEADALLKWKASLKNHNRSLLSSC----INDATNVSSKTSPCN---------DAGRVINISLPNRGVNGTLHDF   71 (148)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W----~~~~~~c~~~gv~c~---------~~~~l~~L~l~~n~l~~~~p~~   71 (148)
                      .+....+++++|++||..+..++..+...|    ....++|.|.|+.|.         ...+++.|++++|.+. .+|. 
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~-   98 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD-   98 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS-
T ss_pred             ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh-
Confidence            455667899999999998854444556778    346678999999985         2368999999999998 6776 


Q ss_pred             CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065           72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus        72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..++.+++|++|++++|++.+.+|..++
T Consensus        99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~  171 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA  171 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred             hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence            7888999999999999998 89999999999999999999999 8899999999999999999999999998764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.71  E-value=1.3e-17  Score=137.14  Aligned_cols=92  Identities=26%  Similarity=0.447  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      ..++.|++++|.++|.+|. .+..++.|+.|+|++|.++|.+|..++++++|++|||++|+++|.+|..+..+++|++|+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             ccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            4688999999999999997 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccccccCCCC
Q 041065          132 IQLNRLDGSWRMC  144 (148)
Q Consensus       132 l~~N~l~g~iP~~  144 (148)
                      +++|+++|.||..
T Consensus       711 ls~N~l~g~iP~~  723 (768)
T 3rgz_A          711 LSNNNLSGPIPEM  723 (768)
T ss_dssp             CCSSEEEEECCSS
T ss_pred             CcCCcccccCCCc
Confidence            9999999999974

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=1.2e-16  Score=114.12  Aligned_cols=113  Identities=21%  Similarity=0.161  Sum_probs=82.8

Q ss_pred             CCCcCCCCCccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCC
Q 041065           32 SSCINDATNVSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLS  101 (148)
Q Consensus        32 ~~W~~~~~~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~  101 (148)
                      ..|......|.|.++.|...          ..++.|++++|.+.+..+. .+..+++|++|+|++|.++...+..|..++
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~   88 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVGVFDSLT   88 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence            34555667899999999742          3588899999998876665 777888888888888888644444567788


Q ss_pred             CCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065          102 NLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus       102 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      +|++|+|++|++++..+..+..+++|++|++++|+++ .+|..+.
T Consensus        89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  132 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE  132 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred             CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence            8888888888887544455677777777777777777 6766543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1e-16  Score=111.51  Aligned_cols=94  Identities=20%  Similarity=0.211  Sum_probs=67.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|++++|.+.+..+...+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            56777777777765444213667777777777777777666777777777777777777777666666777777777777


Q ss_pred             cCccccccCCCCCc
Q 041065          133 QLNRLDGSWRMCTC  146 (148)
Q Consensus       133 ~~N~l~g~iP~~~~  146 (148)
                      ++|++++.+|..+.
T Consensus       110 ~~N~l~~~~~~~~~  123 (192)
T 1w8a_A          110 YDNQISCVMPGSFE  123 (192)
T ss_dssp             CSSCCCEECTTSST
T ss_pred             CCCcCCeeCHHHhh
Confidence            77777776666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=2.7e-15  Score=102.75  Aligned_cols=102  Identities=21%  Similarity=0.264  Sum_probs=76.6

Q ss_pred             ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065           41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS  110 (148)
Q Consensus        41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~  110 (148)
                      |.|.++.|...          ..++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            56777777532          3678888888888754443 577888888888888888855555578888888888888


Q ss_pred             CcccccCCccccCCCCCcEEEccCccccccCCCC
Q 041065          111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMC  144 (148)
Q Consensus       111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~  144 (148)
                      |++++..+..+..+++|++|++++|+++ .+|..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~  118 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDG  118 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTT
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcce-EeCHH
Confidence            8888655556778888888888888888 45543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=2.1e-15  Score=103.15  Aligned_cols=100  Identities=19%  Similarity=0.167  Sum_probs=83.8

Q ss_pred             ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065           41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS  110 (148)
Q Consensus        41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~  110 (148)
                      |.|..+.|...          ..++.|+|++|.+++..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45666666421          4689999999999987776 899999999999999999966666678999999999999


Q ss_pred             CcccccCCccccCCCCCcEEEccCccccccC
Q 041065          111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGSW  141 (148)
Q Consensus       111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~i  141 (148)
                      |++++..+..|..+++|++|+|++|+++...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999655567999999999999999988543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=3.6e-15  Score=105.83  Aligned_cols=86  Identities=21%  Similarity=0.209  Sum_probs=41.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|+|++|.+.+..|. .|..+++|++|+|++|.++...+..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus        57 ~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  135 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL  135 (220)
T ss_dssp             TCCEEECCSSCCCEECTT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence            344444444444433333 4444555555555555554222222344555555555555555444445555555555555


Q ss_pred             cCccccc
Q 041065          133 QLNRLDG  139 (148)
Q Consensus       133 ~~N~l~g  139 (148)
                      ++|++++
T Consensus       136 ~~N~l~~  142 (220)
T 2v9t_B          136 YDNKLQT  142 (220)
T ss_dssp             CSSCCSC
T ss_pred             CCCcCCE
Confidence            5555553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=4.2e-15  Score=104.14  Aligned_cols=97  Identities=21%  Similarity=0.273  Sum_probs=54.3

Q ss_pred             ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065           41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS  110 (148)
Q Consensus        41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~  110 (148)
                      |.|.++.|...          .+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            55666666422          2466677777766643332 455666666666666666543333445566666666666


Q ss_pred             CcccccCCccccCCCCCcEEEccCcccc
Q 041065          111 NQFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      |++++..+..+..+++|++|++++|+++
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~  113 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQ  113 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCc
Confidence            6665333334455555566655555555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.61  E-value=4.2e-16  Score=115.92  Aligned_cols=95  Identities=19%  Similarity=0.310  Sum_probs=80.3

Q ss_pred             CCeEEEEcCC-CCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPN-RGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~-n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.|++++ |.+.+.+|. .+..+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            4688889985 888888886 78888888888888888888888888888888888888888888888888888888888


Q ss_pred             EccCccccccCCCCCcC
Q 041065          131 HIQLNRLDGSWRMCTCT  147 (148)
Q Consensus       131 ~l~~N~l~g~iP~~~~~  147 (148)
                      ++++|+++|.+|..++.
T Consensus       155 ~L~~N~l~~~~p~~l~~  171 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             ECCSSCCEEECCGGGGC
T ss_pred             ECcCCcccCcCCHHHhh
Confidence            88888888888876653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=4.2e-15  Score=105.45  Aligned_cols=94  Identities=16%  Similarity=0.083  Sum_probs=71.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus        57 ~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEG-AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCEEECCCCcCCEECHH-HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            4577777777777755554 677788888888888888766666677888888888888888877677788888888888


Q ss_pred             ccCccccccCCCCCc
Q 041065          132 IQLNRLDGSWRMCTC  146 (148)
Q Consensus       132 l~~N~l~g~iP~~~~  146 (148)
                      |++|++++..|..+.
T Consensus       136 L~~N~l~~~~~~~~~  150 (220)
T 2v70_A          136 LYDNQITTVAPGAFD  150 (220)
T ss_dssp             CTTSCCCCBCTTTTT
T ss_pred             CCCCcCCEECHHHhc
Confidence            888888866676654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=4.9e-15  Score=105.12  Aligned_cols=94  Identities=17%  Similarity=0.100  Sum_probs=61.4

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|++++|.+++..+...+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            35667777777765544324566777777777777776555556677777777777777776555555667777777777


Q ss_pred             cCccccccCCCCCc
Q 041065          133 QLNRLDGSWRMCTC  146 (148)
Q Consensus       133 ~~N~l~g~iP~~~~  146 (148)
                      ++|++++..|..+.
T Consensus       113 s~N~l~~~~~~~~~  126 (220)
T 2v70_A          113 RSNRITCVGNDSFI  126 (220)
T ss_dssp             TTSCCCCBCTTSST
T ss_pred             CCCcCCeECHhHcC
Confidence            77777755555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=2.4e-15  Score=104.58  Aligned_cols=91  Identities=19%  Similarity=0.240  Sum_probs=84.3

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      ..+++.|++++|.+++..|. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             CCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence            36799999999999987786 89999999999999999998888889999999999999999999989999999999999


Q ss_pred             EccCccccccCC
Q 041065          131 HIQLNRLDGSWR  142 (148)
Q Consensus       131 ~l~~N~l~g~iP  142 (148)
                      ++++|.+++..+
T Consensus       132 ~L~~N~l~c~c~  143 (192)
T 1w8a_A          132 NLASNPFNCNCH  143 (192)
T ss_dssp             ECTTCCBCCSGG
T ss_pred             EeCCCCccCcCc
Confidence            999999987654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=9.2e-15  Score=101.86  Aligned_cols=89  Identities=20%  Similarity=0.235  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      ..++.|++++|.++ .+|. .+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+
T Consensus        31 ~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            36888999999887 5665 788899999999999999877777788999999999999999876677888899999999


Q ss_pred             ccCccccccCCC
Q 041065          132 IQLNRLDGSWRM  143 (148)
Q Consensus       132 l~~N~l~g~iP~  143 (148)
                      |++|+++ .+|.
T Consensus       109 L~~N~l~-~~~~  119 (193)
T 2wfh_A          109 LHGNDIS-VVPE  119 (193)
T ss_dssp             CCSSCCC-BCCT
T ss_pred             CCCCCCC-eeCh
Confidence            9999988 5554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.57  E-value=6.8e-15  Score=116.08  Aligned_cols=93  Identities=16%  Similarity=0.080  Sum_probs=73.5

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      ++++|++++|.+++..|. .+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..++.+++|++|++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            688888888888876665 7888888888888888888777777888888888888888888666666888888888888


Q ss_pred             cCccccc-cCCCCCc
Q 041065          133 QLNRLDG-SWRMCTC  146 (148)
Q Consensus       133 ~~N~l~g-~iP~~~~  146 (148)
                      ++|++++ .+|..++
T Consensus       106 s~n~l~~~~~~~~~~  120 (549)
T 2z81_A          106 MGNPYQTLGVTSLFP  120 (549)
T ss_dssp             TTCCCSSSCSSCSCT
T ss_pred             CCCcccccchhhhhh
Confidence            8888875 4555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.56  E-value=5.2e-15  Score=110.77  Aligned_cols=94  Identities=17%  Similarity=0.211  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+ +|. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..++.+++|++|+
T Consensus       206 ~~L~~L~L~~N~l~~-l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSA-LGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             TTCCEEEEESSCCCC-CCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             CCCCEEEccCCCCCc-Cch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            467788888888774 554 677888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCccccccCCCCCcC
Q 041065          132 IQLNRLDGSWRMCTCT  147 (148)
Q Consensus       132 l~~N~l~g~iP~~~~~  147 (148)
                      +++|++.|.+|+.+++
T Consensus       284 L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          284 LRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             CTTCTTCCCCCGGGGG
T ss_pred             CCCCCchhhccHHHhh
Confidence            8888888888887764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.55  E-value=2.9e-14  Score=101.12  Aligned_cols=105  Identities=18%  Similarity=0.198  Sum_probs=86.4

Q ss_pred             ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065           41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS  110 (148)
Q Consensus        41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~  110 (148)
                      |.|..+.|...          ..++.|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            55777777532          3689999999999865554 788999999999999999988888999999999999999


Q ss_pred             CcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065          111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus       111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      |++++..+..|..+++|++|+|++|++++..|..+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~  125 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ  125 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence            999944344578899999999999999977676654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.55  E-value=2.2e-14  Score=104.35  Aligned_cols=86  Identities=17%  Similarity=0.199  Sum_probs=49.6

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|++++|.+....+. .+..+++|++|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        38 ~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            466777777776644333 5666666666666666666333333455666666666666665433334455555555555


Q ss_pred             cCccccc
Q 041065          133 QLNRLDG  139 (148)
Q Consensus       133 ~~N~l~g  139 (148)
                      ++|++++
T Consensus       117 ~~n~l~~  123 (270)
T 2o6q_A          117 DRNQLKS  123 (270)
T ss_dssp             CSSCCCC
T ss_pred             CCCccCe
Confidence            5555553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.55  E-value=3.1e-14  Score=102.51  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        59 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAG-VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCCccCHh-HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            3455566666655544443 455666666666666666544444555666666666666666643334456666666666


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      +++|++++
T Consensus       138 Ls~N~l~~  145 (251)
T 3m19_A          138 LNTNQLQS  145 (251)
T ss_dssp             CCSSCCCC
T ss_pred             CcCCcCCc
Confidence            66666663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.53  E-value=2.2e-14  Score=114.15  Aligned_cols=93  Identities=23%  Similarity=0.125  Sum_probs=75.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .+++|+|++|.+++..+. .|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            689999999999865554 7899999999999999998666667888999999999999998655567888888999999


Q ss_pred             cCccccccCCCCCc
Q 041065          133 QLNRLDGSWRMCTC  146 (148)
Q Consensus       133 ~~N~l~g~iP~~~~  146 (148)
                      ++|++++..|..|+
T Consensus       132 s~N~l~~l~~~~~~  145 (635)
T 4g8a_A          132 VETNLASLENFPIG  145 (635)
T ss_dssp             TTSCCCCSTTCCCT
T ss_pred             CCCcCCCCChhhhh
Confidence            88888844333444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=4.1e-14  Score=97.09  Aligned_cols=87  Identities=16%  Similarity=0.101  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      ..++.|+|++|.+.+..|. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            4688999999999977776 899999999999999999965455578999999999999999954444589999999999


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      |++|++..
T Consensus       112 L~~N~~~c  119 (174)
T 2r9u_A          112 LYNNPWDC  119 (174)
T ss_dssp             CCSSCBCT
T ss_pred             eCCCCccc
Confidence            99999873

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=1.2e-14  Score=119.21  Aligned_cols=90  Identities=24%  Similarity=0.290  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|+|++|.+. .+|. .+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..|+.+++|++|+|
T Consensus       225 ~L~~L~Ls~n~l~-~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          225 LWHALDLSNLQIF-NISA-NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCEEECTTSCCS-CCCG-GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCcEEECCCCCCC-CCCh-hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            4667777777776 4554 5567777777777777777 67777777777777777777777 67777777777777777


Q ss_pred             cCccccccCCCCCcC
Q 041065          133 QLNRLDGSWRMCTCT  147 (148)
Q Consensus       133 ~~N~l~g~iP~~~~~  147 (148)
                      ++|.|+ .||..|++
T Consensus       301 ~~N~l~-~lp~~~~~  314 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGN  314 (727)
T ss_dssp             CSSCCC-CCCSSTTS
T ss_pred             CCCCCC-ccChhhhc
Confidence            777776 77766654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.49  E-value=8.9e-14  Score=104.26  Aligned_cols=96  Identities=18%  Similarity=0.131  Sum_probs=71.1

Q ss_pred             ccccceeeCCC------------CCeEEEEcCC-CCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceee
Q 041065           41 VSSKTSPCNDA------------GRVINISLPN-RGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIY  107 (148)
Q Consensus        41 c~~~gv~c~~~------------~~l~~L~l~~-n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  107 (148)
                      |.|..+.|...            .+++.|+|++ |.+.+..+. .|..+++|+.|+|++|.+++..|..|.++++|++|+
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            56666666532            2478888886 888765554 788888888888888888887777788888888888


Q ss_pred             cCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065          108 LGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       108 ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      |++|+|++..+..+..+. |+.|+|.+|+|.
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            888888843334444444 888888888776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.49  E-value=1.5e-13  Score=97.86  Aligned_cols=92  Identities=20%  Similarity=0.243  Sum_probs=74.5

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|++|.+....+. .+..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+
T Consensus        64 ~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  141 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA  141 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred             cCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence            5789999999998644333 6788999999999999998665666788999999999999998 7888888899999999


Q ss_pred             ccCccccccCCCCC
Q 041065          132 IQLNRLDGSWRMCT  145 (148)
Q Consensus       132 l~~N~l~g~iP~~~  145 (148)
                      |++|++++..+..+
T Consensus       142 L~~N~l~~~~~~~~  155 (229)
T 3e6j_A          142 LDQNQLKSIPHGAF  155 (229)
T ss_dssp             CCSSCCCCCCTTTT
T ss_pred             CCCCcCCccCHHHH
Confidence            99999884333333

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.49  E-value=9.6e-14  Score=104.37  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=82.9

Q ss_pred             CCcCCCCCccccceeeCCC------------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCC
Q 041065           33 SCINDATNVSSKTSPCNDA------------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNL  100 (148)
Q Consensus        33 ~W~~~~~~c~~~gv~c~~~------------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l  100 (148)
                      .|......|.|.++ |+..            .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+.++
T Consensus        22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSL   99 (353)
T ss_dssp             -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCC
Confidence            34444456778776 5421            3689999999999865544 78899999999999999987777789999


Q ss_pred             CCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065          101 SNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       101 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  143 (148)
                      ++|++|++++|++++..+..++.+++|++|++++|+++ .+|.
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~  141 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE  141 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred             CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence            99999999999998433344888999999999999988 6665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.49  E-value=2e-13  Score=98.29  Aligned_cols=93  Identities=18%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+
T Consensus        83 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  161 (251)
T 3m19_A           83 TELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS  161 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCEEECCCCcccccChh-HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence            4677888888887754444 677788888888888888755555567788888888888888755455677788888888


Q ss_pred             ccCccccccCCCCC
Q 041065          132 IQLNRLDGSWRMCT  145 (148)
Q Consensus       132 l~~N~l~g~iP~~~  145 (148)
                      +++|++++..|..+
T Consensus       162 L~~N~l~~~~~~~~  175 (251)
T 3m19_A          162 LSTNQLQSVPHGAF  175 (251)
T ss_dssp             CCSSCCSCCCTTTT
T ss_pred             CCCCcCCccCHHHH
Confidence            88888875444344

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.48  E-value=2.4e-13  Score=95.14  Aligned_cols=86  Identities=20%  Similarity=0.261  Sum_probs=48.4

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  130 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR  130 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence            3566666666666533222 455566666666666666543333455566666666666666543333455566666666


Q ss_pred             ccCcccc
Q 041065          132 IQLNRLD  138 (148)
Q Consensus       132 l~~N~l~  138 (148)
                      +++|+++
T Consensus       131 l~~N~l~  137 (208)
T 2o6s_A          131 LYQNQLK  137 (208)
T ss_dssp             CCSSCCS
T ss_pred             CCCCccc
Confidence            6666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=1.2e-13  Score=94.38  Aligned_cols=91  Identities=19%  Similarity=0.199  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      ..+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        51 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  129 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDG-VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI  129 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cccccEEECCCCcceEeChh-HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence            35799999999999865444 68899999999999999997666678899999999999999995444456889999999


Q ss_pred             EccCccccccCC
Q 041065          131 HIQLNRLDGSWR  142 (148)
Q Consensus       131 ~l~~N~l~g~iP  142 (148)
                      ++++|++++..|
T Consensus       130 ~l~~N~~~~~~~  141 (177)
T 2o6r_A          130 WLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCBCCCHH
T ss_pred             EecCCCeeccCc
Confidence            999999987654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=4.5e-14  Score=93.99  Aligned_cols=88  Identities=17%  Similarity=0.134  Sum_probs=77.0

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCccccc-CCccccCCCCCcE
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGN-IPAEVGLLSHLEV  129 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~  129 (148)
                      ..+++.|++++|.+.+.  . .+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++
T Consensus        41 l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             CTTCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             cCCCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence            46799999999999865  3 789999999999999999987888888899999999999999862 3478999999999


Q ss_pred             EEccCccccccC
Q 041065          130 LHIQLNRLDGSW  141 (148)
Q Consensus       130 L~l~~N~l~g~i  141 (148)
                      |++++|++++..
T Consensus       118 L~l~~N~l~~~~  129 (149)
T 2je0_A          118 LDLFNCEVTNLN  129 (149)
T ss_dssp             EECTTCGGGGST
T ss_pred             EeCcCCcccchH
Confidence            999999998543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.47  E-value=2.7e-13  Score=102.56  Aligned_cols=89  Identities=21%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             eEEEEcCCCCccceecCCCCC-CCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           54 VINISLPNRGVNGTLHDFSFS-SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      ++.|+|++|.+++..+. .+. .+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        41 l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             CSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            55666666666543332 344 5555555555555555444444555555555555555555433344555555555555


Q ss_pred             cCccccccCCC
Q 041065          133 QLNRLDGSWRM  143 (148)
Q Consensus       133 ~~N~l~g~iP~  143 (148)
                      ++|++++..|.
T Consensus       120 ~~N~i~~~~~~  130 (361)
T 2xot_A          120 YNNHIVVVDRN  130 (361)
T ss_dssp             CSSCCCEECTT
T ss_pred             CCCcccEECHH
Confidence            55555533333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.46  E-value=3.4e-13  Score=98.17  Aligned_cols=85  Identities=21%  Similarity=0.266  Sum_probs=37.9

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      ++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|+++
T Consensus       111 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDG-VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             CCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCccCHH-HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence            44444444444432222 34444444444444444443333334444445555555554443333334444555555555


Q ss_pred             Cccccc
Q 041065          134 LNRLDG  139 (148)
Q Consensus       134 ~N~l~g  139 (148)
                      +|++++
T Consensus       190 ~N~l~~  195 (272)
T 3rfs_A          190 QNQLKS  195 (272)
T ss_dssp             SSCCSC
T ss_pred             CCcCCc
Confidence            555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=4.1e-13  Score=107.60  Aligned_cols=94  Identities=15%  Similarity=0.060  Sum_probs=74.0

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|++
T Consensus        76 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            567788888888766665 7888888999999999888777777888888999999988888433344688888899999


Q ss_pred             cCccccccCCCCCcC
Q 041065          133 QLNRLDGSWRMCTCT  147 (148)
Q Consensus       133 ~~N~l~g~iP~~~~~  147 (148)
                      ++|.+++..|..++.
T Consensus       155 s~N~l~~~~~~~~~~  169 (597)
T 3oja_B          155 SNNNLERIEDDTFQA  169 (597)
T ss_dssp             CSSCCCBCCTTTTTT
T ss_pred             eCCcCCCCChhhhhc
Confidence            888888777766653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.46  E-value=3e-13  Score=94.12  Aligned_cols=87  Identities=26%  Similarity=0.254  Sum_probs=77.8

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            5799999999999976665 799999999999999999987778899999999999999999955455788999999999


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      +++|.+..
T Consensus       133 L~~N~~~C  140 (193)
T 2wfh_A          133 IGANPLYC  140 (193)
T ss_dssp             CCSSCEEC
T ss_pred             eCCCCeec
Confidence            99998863

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.46  E-value=2.5e-13  Score=108.09  Aligned_cols=94  Identities=22%  Similarity=0.291  Sum_probs=77.3

Q ss_pred             CCeEEEEcCCCCccc-eecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNG-TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      ..++.|++++|.+.. ..|. .+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  547 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  547 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred             hhhhhhhhhhcccccccCch-hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence            467888888887543 4554 78888899999999999988888888889999999999999987777788888999999


Q ss_pred             EccCccccccCCCCCc
Q 041065          131 HIQLNRLDGSWRMCTC  146 (148)
Q Consensus       131 ~l~~N~l~g~iP~~~~  146 (148)
                      ++++|++++..|..+.
T Consensus       548 ~Ls~N~l~~~~~~~l~  563 (635)
T 4g8a_A          548 DYSLNHIMTSKKQELQ  563 (635)
T ss_dssp             ECTTSCCCBCCSSCTT
T ss_pred             ECCCCcCCCCCHHHHH
Confidence            9999999877776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=5.4e-13  Score=91.01  Aligned_cols=89  Identities=17%  Similarity=0.079  Sum_probs=75.2

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      .+.+++++|.++. +|. .+  .+.|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~~-ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4689999999984 665 44  3889999999999998888889999999999999999996555667899999999999


Q ss_pred             CccccccCCCCCc
Q 041065          134 LNRLDGSWRMCTC  146 (148)
Q Consensus       134 ~N~l~g~iP~~~~  146 (148)
                      +|+|++..|..+.
T Consensus        87 ~N~l~~~~~~~~~   99 (170)
T 3g39_A           87 DNQLKSIPRGAFD   99 (170)
T ss_dssp             SSCCCCCCTTTTT
T ss_pred             CCccCEeCHHHhc
Confidence            9999954444444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.45  E-value=4.9e-13  Score=97.35  Aligned_cols=94  Identities=19%  Similarity=0.171  Sum_probs=71.2

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus        85 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccChh-HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence            4678888888887755543 577888888888888888866666678888888888888888865555677888888888


Q ss_pred             ccCccccccCCCCCc
Q 041065          132 IQLNRLDGSWRMCTC  146 (148)
Q Consensus       132 l~~N~l~g~iP~~~~  146 (148)
                      +++|++++..|..++
T Consensus       164 l~~n~l~~~~~~~~~  178 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFD  178 (272)
T ss_dssp             CCSSCCCCCCTTTTT
T ss_pred             CCCCCcCccCHHHhc
Confidence            888888855444333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.45  E-value=3.7e-13  Score=107.37  Aligned_cols=93  Identities=17%  Similarity=0.170  Sum_probs=52.6

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+++..|. .|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|++
T Consensus        57 ~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           57 ELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             cCcEEeCCCCcccccCHH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            455555555555544443 4555566666666666665555555566666666666666665444455566666666666


Q ss_pred             cCccccc-cCCCCCc
Q 041065          133 QLNRLDG-SWRMCTC  146 (148)
Q Consensus       133 ~~N~l~g-~iP~~~~  146 (148)
                      ++|++++ .+|..++
T Consensus       136 ~~n~l~~~~lp~~~~  150 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFS  150 (606)
T ss_dssp             CSSCCCCCCCCGGGG
T ss_pred             CCCcccceechHhHh
Confidence            6666653 4555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=1.2e-13  Score=93.64  Aligned_cols=87  Identities=23%  Similarity=0.285  Sum_probs=74.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEV  129 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~  129 (148)
                      .+++.|++++|.+.+.  . .+..+++|++|++++|.+++.+|..+..+++|++|++++|++++ +|  ..+..+++|++
T Consensus        49 ~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred             CCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCE
Confidence            5789999999998865  3 78899999999999999997788878789999999999999985 44  68889999999


Q ss_pred             EEccCccccccCCC
Q 041065          130 LHIQLNRLDGSWRM  143 (148)
Q Consensus       130 L~l~~N~l~g~iP~  143 (148)
                      |++++|++++ +|.
T Consensus       125 L~l~~N~l~~-~~~  137 (168)
T 2ell_A          125 LDLFNCEVTN-LND  137 (168)
T ss_dssp             EECCSSGGGT-STT
T ss_pred             EEeeCCcCcc-hHH
Confidence            9999999984 443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.45  E-value=4.7e-13  Score=98.63  Aligned_cols=94  Identities=22%  Similarity=0.291  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCCccc-eecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNG-TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.|++++|.+.+ .+|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             cCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            467777777777765 4554 67777888888888888876667777778888888888888876555567777888888


Q ss_pred             EccCccccccCCCCCc
Q 041065          131 HIQLNRLDGSWRMCTC  146 (148)
Q Consensus       131 ~l~~N~l~g~iP~~~~  146 (148)
                      ++++|++++.+|..+.
T Consensus       229 ~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             ECTTSCCCBCSSSSCC
T ss_pred             ECCCCCCcccCHHHHH
Confidence            8888888777766554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=2e-14  Score=117.79  Aligned_cols=90  Identities=22%  Similarity=0.383  Sum_probs=83.8

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|++|.++ .+|. .+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|+.+++|++|+
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred             CCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence            57899999999999 7886 8999999999999999999 88999999999999999999998 8999999999999999


Q ss_pred             ccCccccccCCCCC
Q 041065          132 IQLNRLDGSWRMCT  145 (148)
Q Consensus       132 l~~N~l~g~iP~~~  145 (148)
                      |++|+|+|.+|..+
T Consensus       323 L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          323 VEGNPLEKQFLKIL  336 (727)
T ss_dssp             CTTSCCCSHHHHHH
T ss_pred             CCCCccCCCChHHH
Confidence            99999998887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=7e-13  Score=90.87  Aligned_cols=85  Identities=20%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             EEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccC
Q 041065           55 INISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQL  134 (148)
Q Consensus        55 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~  134 (148)
                      +.+++++|++. .+|. .+.  ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            57899999986 5775 443  8999999999999988888999999999999999999964445578999999999999


Q ss_pred             ccccccCCCC
Q 041065          135 NRLDGSWRMC  144 (148)
Q Consensus       135 N~l~g~iP~~  144 (148)
                      |+|+ .+|+.
T Consensus        91 N~l~-~l~~~   99 (174)
T 2r9u_A           91 NHLK-SIPRG   99 (174)
T ss_dssp             SCCC-CCCTT
T ss_pred             Cccc-eeCHH
Confidence            9999 55553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.43  E-value=4.9e-13  Score=103.24  Aligned_cols=90  Identities=20%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcccccChh-HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence            4677777777777766565 677778888888888887766677777788888888888888776677777788888888


Q ss_pred             ccCccccccCCC
Q 041065          132 IQLNRLDGSWRM  143 (148)
Q Consensus       132 l~~N~l~g~iP~  143 (148)
                      +++|++++ +|+
T Consensus       378 L~~N~l~~-~~~  388 (455)
T 3v47_A          378 LDTNQLKS-VPD  388 (455)
T ss_dssp             CCSSCCSC-CCT
T ss_pred             CCCCcccc-CCH
Confidence            88888774 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.43  E-value=4.4e-13  Score=106.92  Aligned_cols=93  Identities=17%  Similarity=0.143  Sum_probs=54.2

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L  130 (148)
                      .+++.|++++|.+.+..|. .+.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|
T Consensus        80 ~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A           80 HHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             TTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             hhcCEeECCCCcccccChh-hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            3556666666666554454 56666666666666666654444556666666666666666653 456666666666666


Q ss_pred             EccCccccccCCCCC
Q 041065          131 HIQLNRLDGSWRMCT  145 (148)
Q Consensus       131 ~l~~N~l~g~iP~~~  145 (148)
                      ++++|++++..|..+
T Consensus       159 ~Ls~n~l~~~~~~~~  173 (606)
T 3vq2_A          159 DLSYNYIQTITVNDL  173 (606)
T ss_dssp             ECCSSCCCEECTTTT
T ss_pred             EccCCcceecChhhh
Confidence            666666665444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=3.2e-13  Score=107.96  Aligned_cols=87  Identities=18%  Similarity=0.189  Sum_probs=78.0

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccC-CccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNI-PAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~-p~~~~~l~~L~~L  130 (148)
                      .+++.|+|++|.++ .+|. .+..+++|+.|+|++|.+++ +| .++.+++|++|+|++|++++.. |..++.+++|+.|
T Consensus       463 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          463 LLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             TTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             ccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            57899999999998 7786 89999999999999999986 67 8999999999999999999766 8999999999999


Q ss_pred             EccCccccccCC
Q 041065          131 HIQLNRLDGSWR  142 (148)
Q Consensus       131 ~l~~N~l~g~iP  142 (148)
                      +|++|++++..|
T Consensus       539 ~L~~N~l~~~~~  550 (567)
T 1dce_A          539 NLQGNSLCQEEG  550 (567)
T ss_dssp             ECTTSGGGGSSS
T ss_pred             EecCCcCCCCcc
Confidence            999999996554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.42  E-value=8e-13  Score=102.83  Aligned_cols=92  Identities=28%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|++++|.+++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        33 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            466677777776655444 5666666666666666666555666666666666666666666333334566666666666


Q ss_pred             cCccccccCCCCC
Q 041065          133 QLNRLDGSWRMCT  145 (148)
Q Consensus       133 ~~N~l~g~iP~~~  145 (148)
                      ++|++++..|..+
T Consensus       112 s~n~i~~~~~~~~  124 (477)
T 2id5_A          112 SENKIVILLDYMF  124 (477)
T ss_dssp             TTSCCCEECTTTT
T ss_pred             CCCccccCChhHc
Confidence            6666665545443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.42  E-value=9.4e-13  Score=96.16  Aligned_cols=89  Identities=20%  Similarity=0.141  Sum_probs=59.4

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCc-cccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNG-FFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~-l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus        56 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            4566677777666655454 66677777777777775 554445666677777777777777776556666777777777


Q ss_pred             EccCccccccC
Q 041065          131 HIQLNRLDGSW  141 (148)
Q Consensus       131 ~l~~N~l~g~i  141 (148)
                      ++++|++++..
T Consensus       135 ~l~~n~l~~~~  145 (285)
T 1ozn_A          135 YLQDNALQALP  145 (285)
T ss_dssp             ECCSSCCCCCC
T ss_pred             ECCCCcccccC
Confidence            77777776433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.42  E-value=9.9e-13  Score=96.83  Aligned_cols=91  Identities=15%  Similarity=0.096  Sum_probs=51.0

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+++..+. .|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus       101 ~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             TCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence            455555555555543333 4556666666666666665444444555666666666666666322233455666666666


Q ss_pred             cCccccccCCCCC
Q 041065          133 QLNRLDGSWRMCT  145 (148)
Q Consensus       133 ~~N~l~g~iP~~~  145 (148)
                      ++|+++ .+|..+
T Consensus       180 ~~N~l~-~ip~~~  191 (290)
T 1p9a_G          180 QENSLY-TIPKGF  191 (290)
T ss_dssp             CSSCCC-CCCTTT
T ss_pred             CCCcCC-ccChhh
Confidence            666666 555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.42  E-value=3.6e-13  Score=111.76  Aligned_cols=90  Identities=18%  Similarity=0.179  Sum_probs=54.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCcc--ccCCCCCcEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE--VGLLSHLEVL  130 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~--~~~l~~L~~L  130 (148)
                      +++.|++++|...+.++...|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++.+|..  ++.+++|++|
T Consensus        49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L  128 (844)
T 3j0a_A           49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL  128 (844)
T ss_dssp             SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred             cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence            45555555554444442225666666666666666666556666666666666666666666555543  6666666666


Q ss_pred             EccCccccccCC
Q 041065          131 HIQLNRLDGSWR  142 (148)
Q Consensus       131 ~l~~N~l~g~iP  142 (148)
                      ++++|++++..|
T Consensus       129 ~Ls~N~l~~~~~  140 (844)
T 3j0a_A          129 DLSKNQIRSLYL  140 (844)
T ss_dssp             EEESCCCCCCCC
T ss_pred             ECCCCccccccc
Confidence            666666665433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=2e-13  Score=90.82  Aligned_cols=85  Identities=21%  Similarity=0.322  Sum_probs=75.3

Q ss_pred             CCeEEEEcCCCCcc-ceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVN-GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.|++++|.+. +.+|. .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            46889999999998 77886 788999999999999999865  678899999999999999997788888889999999


Q ss_pred             EccCccccc
Q 041065          131 HIQLNRLDG  139 (148)
Q Consensus       131 ~l~~N~l~g  139 (148)
                      ++++|++++
T Consensus        94 ~ls~N~i~~  102 (149)
T 2je0_A           94 NLSGNKIKD  102 (149)
T ss_dssp             ECTTSCCCS
T ss_pred             ECCCCcCCC
Confidence            999999985

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.42  E-value=9.4e-13  Score=96.15  Aligned_cols=89  Identities=20%  Similarity=0.214  Sum_probs=35.8

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      ++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus       107 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             CCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            34444444444332222 33444444444444444443222334444444444444444442222234444444444444


Q ss_pred             CccccccCCC
Q 041065          134 LNRLDGSWRM  143 (148)
Q Consensus       134 ~N~l~g~iP~  143 (148)
                      +|++++..|.
T Consensus       186 ~n~l~~~~~~  195 (285)
T 1ozn_A          186 QNRVAHVHPH  195 (285)
T ss_dssp             SSCCCEECTT
T ss_pred             CCcccccCHh
Confidence            4444433333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.42  E-value=7e-13  Score=102.34  Aligned_cols=90  Identities=20%  Similarity=0.235  Sum_probs=54.5

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus       323 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          323 THLLKLNLSQNFLGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW  401 (455)
T ss_dssp             TTCCEEECCSSCCCEECGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ccCCEEECCCCccCCcChh-HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence            3566666666666544443 556666666666666666655566666666666666666666643333455666666666


Q ss_pred             ccCccccccCC
Q 041065          132 IQLNRLDGSWR  142 (148)
Q Consensus       132 l~~N~l~g~iP  142 (148)
                      +++|++++.+|
T Consensus       402 l~~N~l~~~~~  412 (455)
T 3v47_A          402 LHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCBCCCTT
T ss_pred             ccCCCcccCCC
Confidence            66666666555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.41  E-value=5.5e-13  Score=100.83  Aligned_cols=91  Identities=20%  Similarity=0.240  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|++|.+++..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+
T Consensus        64 ~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccCEEECCCCcCCccChh-hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            4677777777777755444 677777777777777777755555677777777777777777766666777777777777


Q ss_pred             ccCccccccCCCC
Q 041065          132 IQLNRLDGSWRMC  144 (148)
Q Consensus       132 l~~N~l~g~iP~~  144 (148)
                      |++|+++ .+|..
T Consensus       143 L~~N~l~-~l~~~  154 (361)
T 2xot_A          143 LSQNQIS-RFPVE  154 (361)
T ss_dssp             CCSSCCC-SCCGG
T ss_pred             CCCCcCC-eeCHH
Confidence            7777777 45543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.41  E-value=9.3e-13  Score=102.13  Aligned_cols=90  Identities=20%  Similarity=0.175  Sum_probs=79.2

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|++|.+++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            3689999999999977676 899999999999999999988888899999999999999999965556688999999999


Q ss_pred             ccCccccccCCC
Q 041065          132 IQLNRLDGSWRM  143 (148)
Q Consensus       132 l~~N~l~g~iP~  143 (148)
                      |++|+++ .+|.
T Consensus       154 L~~N~l~-~~~~  164 (452)
T 3zyi_A          154 LRNNPIE-SIPS  164 (452)
T ss_dssp             CCSCCCC-EECT
T ss_pred             CCCCCcc-eeCH
Confidence            9999998 4544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=4.4e-13  Score=107.17  Aligned_cols=89  Identities=22%  Similarity=0.271  Sum_probs=81.0

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|++++|.+++ +|  .+..+++|+.|+|++|.++ .+|..++.+++|++|+|++|++++ +| .++.+++|+.|+|
T Consensus       442 ~L~~L~Ls~n~l~~-lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-Cc--CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            57899999999986 66  4899999999999999999 899999999999999999999996 78 8999999999999


Q ss_pred             cCccccccC-CCCCcC
Q 041065          133 QLNRLDGSW-RMCTCT  147 (148)
Q Consensus       133 ~~N~l~g~i-P~~~~~  147 (148)
                      ++|++++.+ |..++.
T Consensus       516 s~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             CSSCCCSSSTTGGGGG
T ss_pred             CCCCCCCCCCcHHHhc
Confidence            999999776 877654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.40  E-value=9.7e-14  Score=112.08  Aligned_cols=90  Identities=12%  Similarity=0.265  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCCccce-----------------ecCCCCC--CCCCCcEEEcccCccccCCCccccCCCCCceeecCCCc
Q 041065           52 GRVINISLPNRGVNGT-----------------LHDFSFS--SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQ  112 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~-----------------~p~~~~~--~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~  112 (148)
                      .++++|++++|.+++.                 +|. .+.  .+++|++|++++|.+.|.+|..++++++|++|++++|+
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            5678888888888874                 776 777  78888888888888888888888888888888888887


Q ss_pred             -ccc-cCCccccCC------CCCcEEEccCccccccCCC
Q 041065          113 -FFG-NIPAEVGLL------SHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       113 -l~g-~~p~~~~~l------~~L~~L~l~~N~l~g~iP~  143 (148)
                       ++| .+|..++.+      ++|++|++++|+++ .||.
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence             777 666655554      55666666666555 5555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=1.3e-12  Score=95.06  Aligned_cols=86  Identities=17%  Similarity=0.236  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcEEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEVLH  131 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L~  131 (148)
                      +++.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|+
T Consensus        77 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           77 HLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             TCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCccCccChh-hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence            455555555555443333 45555555555555555554434345555556666666665553 2455555566666666


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      +++|++++
T Consensus       156 Ls~N~l~~  163 (276)
T 2z62_A          156 LSSNKIQS  163 (276)
T ss_dssp             CCSSCCCE
T ss_pred             CCCCCCCc
Confidence            66665553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.39  E-value=1e-12  Score=104.84  Aligned_cols=86  Identities=14%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.|++++|.+++..|. .|..+++|++|++++|.+.+..|..|.++++|++|++++|++++..|..++.+++|++|++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             cCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            466777777777655554 6666777777777777666666666666666777777766666655666666666666666


Q ss_pred             cCccccc
Q 041065          133 QLNRLDG  139 (148)
Q Consensus       133 ~~N~l~g  139 (148)
                      ++|++++
T Consensus       113 ~~n~i~~  119 (606)
T 3t6q_A          113 IQTGISS  119 (606)
T ss_dssp             TTSCCSC
T ss_pred             cccCccc
Confidence            6666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.39  E-value=2.1e-12  Score=95.04  Aligned_cols=90  Identities=20%  Similarity=0.231  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+. .+|. .+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus        77 ~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCC-cCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            45777777777776 4565 677888888888888888866666788888888888888888855555677888888888


Q ss_pred             ccCccccccCCCC
Q 041065          132 IQLNRLDGSWRMC  144 (148)
Q Consensus       132 l~~N~l~g~iP~~  144 (148)
                      +++|+++ .+|..
T Consensus       155 L~~N~l~-~l~~~  166 (290)
T 1p9a_G          155 LANNNLT-ELPAG  166 (290)
T ss_dssp             CTTSCCS-CCCTT
T ss_pred             CCCCcCC-ccCHH
Confidence            8888888 56654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.38  E-value=1.8e-12  Score=94.24  Aligned_cols=94  Identities=18%  Similarity=0.155  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             TTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             cCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            4567777777776654443 567777777777777777766666677777777777777777755444677777778888


Q ss_pred             ccCccccc-cCCCCCc
Q 041065          132 IQLNRLDG-SWRMCTC  146 (148)
Q Consensus       132 l~~N~l~g-~iP~~~~  146 (148)
                      +++|++++ .+|..++
T Consensus       131 l~~n~l~~~~l~~~~~  146 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFS  146 (276)
T ss_dssp             CCSSCCCCCCCCGGGG
T ss_pred             CcCCccceecCchhhc
Confidence            87777774 3565544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.38  E-value=2.3e-12  Score=96.11  Aligned_cols=94  Identities=26%  Similarity=0.365  Sum_probs=73.0

Q ss_pred             ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065           41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS  110 (148)
Q Consensus        41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~  110 (148)
                      |.+..+.|...          .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            67888887632          3689999999999866565 789999999999999999987788899999999999998


Q ss_pred             CcccccCCccccCCCCCcEEEccCcccc
Q 041065          111 NQFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      |+++ .+|..+.  ++|++|++++|+++
T Consensus       112 n~l~-~l~~~~~--~~L~~L~l~~n~i~  136 (332)
T 2ft3_A          112 NHLV-EIPPNLP--SSLVELRIHDNRIR  136 (332)
T ss_dssp             SCCC-SCCSSCC--TTCCEEECCSSCCC
T ss_pred             CcCC-ccCcccc--ccCCEEECCCCccC
Confidence            8887 5665443  45555555555555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.38  E-value=9.7e-13  Score=104.49  Aligned_cols=91  Identities=19%  Similarity=0.149  Sum_probs=70.6

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|++++|+++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            4688888888888866555 7888888888888888888777777888888888888888887 56765  678888888


Q ss_pred             ccCccccc-cCCCCCc
Q 041065          132 IQLNRLDG-SWRMCTC  146 (148)
Q Consensus       132 l~~N~l~g-~iP~~~~  146 (148)
                      +++|++++ .+|..++
T Consensus       128 Ls~N~l~~l~~p~~~~  143 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFG  143 (562)
T ss_dssp             CCSSCCSBCCCCGGGG
T ss_pred             CCCCCccccCchHhhc
Confidence            88888875 4455554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.37  E-value=9.1e-13  Score=89.25  Aligned_cols=92  Identities=16%  Similarity=0.103  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccC-CCccccCCCCCceeecCCCcccccCC---ccccCCCCC
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT-IPPQISNLSNLRYIYLGSNQFFGNIP---AEVGLLSHL  127 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~~p---~~~~~l~~L  127 (148)
                      .+++.|++++|.+.+.+|. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDM-LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCH-HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCCEEECcCCcCchHHHH-HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            4678888888888765554 455578888888888888753 22567778888888888888874433   367778888


Q ss_pred             cEEEccCccccccCCCCC
Q 041065          128 EVLHIQLNRLDGSWRMCT  145 (148)
Q Consensus       128 ~~L~l~~N~l~g~iP~~~  145 (148)
                      ++|++++|.+. ++|+..
T Consensus       150 ~~L~l~~n~~~-~~~~~~  166 (168)
T 2ell_A          150 TYLDGYDREDQ-EAPDSD  166 (168)
T ss_dssp             CEETTEETTSC-BCCSSS
T ss_pred             cEecCCCCChh-hccccc
Confidence            88888888777 677653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=2.2e-12  Score=96.65  Aligned_cols=86  Identities=16%  Similarity=0.188  Sum_probs=75.9

Q ss_pred             EEEcCCC-CccceecCCCCCCCCCCcEEEccc-CccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           56 NISLPNR-GVNGTLHDFSFSSFPHLAYLDLTW-NGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        56 ~L~l~~n-~l~~~~p~~~~~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      .++.+++ +++. +|.  +..+++|+.|+|++ |.+++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|+
T Consensus        12 ~v~~~~~n~l~~-ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTT-TTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCc-cCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4588888 8874 774  88999999999996 99997777889999999999999999999888899999999999999


Q ss_pred             CccccccCCCCC
Q 041065          134 LNRLDGSWRMCT  145 (148)
Q Consensus       134 ~N~l~g~iP~~~  145 (148)
                      +|+|+ .+|+.+
T Consensus        89 ~N~l~-~~~~~~   99 (347)
T 2ifg_A           89 FNALE-SLSWKT   99 (347)
T ss_dssp             SSCCS-CCCSTT
T ss_pred             CCccc-eeCHHH
Confidence            99999 566543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.37  E-value=4e-12  Score=92.35  Aligned_cols=85  Identities=21%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus       110 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             SCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccCeeCHH-HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence            344444444444433332 3445555555555555555333333455555555555555555433334555556666666


Q ss_pred             cCcccc
Q 041065          133 QLNRLD  138 (148)
Q Consensus       133 ~~N~l~  138 (148)
                      ++|+++
T Consensus       189 ~~N~l~  194 (270)
T 2o6q_A          189 DNNQLK  194 (270)
T ss_dssp             CSSCCS
T ss_pred             CCCcCC
Confidence            666555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.36  E-value=1.8e-12  Score=95.52  Aligned_cols=87  Identities=22%  Similarity=0.335  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCcccc-CCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFG-TIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+.|
T Consensus       126 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  204 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  204 (306)
T ss_dssp             TTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence            3455666666665554443 55666666666666666654 355566666666666666666665556666666666666


Q ss_pred             EccCccccc
Q 041065          131 HIQLNRLDG  139 (148)
Q Consensus       131 ~l~~N~l~g  139 (148)
                      ++++|++++
T Consensus       205 ~L~~N~l~~  213 (306)
T 2z66_A          205 NMSHNNFFS  213 (306)
T ss_dssp             ECTTSCCSB
T ss_pred             ECCCCccCc
Confidence            666666664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.36  E-value=4.3e-13  Score=105.29  Aligned_cols=84  Identities=24%  Similarity=0.291  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L  130 (148)
                      .+++.|++++|.+++..|. .|..+++|++|++++|.++ .+|..  .+++|++|++++|++++ .+|..++.+++|++|
T Consensus        45 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           45 SKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL  120 (520)
T ss_dssp             TTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred             ccccEEecCCCccCCcChH-HhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence            4566677777766655554 6666677777777777666 45544  56667777777777665 456666777777777


Q ss_pred             EccCccccc
Q 041065          131 HIQLNRLDG  139 (148)
Q Consensus       131 ~l~~N~l~g  139 (148)
                      ++++|++++
T Consensus       121 ~L~~n~l~~  129 (520)
T 2z7x_B          121 GLSTTHLEK  129 (520)
T ss_dssp             EEEESSCCG
T ss_pred             EecCcccch
Confidence            777776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.36  E-value=1.8e-12  Score=90.09  Aligned_cols=86  Identities=20%  Similarity=0.294  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+.+| .+..+++|++|+
T Consensus        88 ~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~  165 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN  165 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSC-CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred             CCCCEEEeECCccCcccCh-hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence            4567777777777665554 67777777777777777776666667777777777777776222555 466777777777


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      +++|++++
T Consensus       166 l~~n~i~~  173 (197)
T 4ezg_A          166 IQFDGVHD  173 (197)
T ss_dssp             CTTBCCCC
T ss_pred             CCCCCCcC
Confidence            77777763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.36  E-value=2.3e-12  Score=95.88  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus       192 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  269 (330)
T ss_dssp             TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence            4678888888888866565 7888899999999999998777777888899999999999998 7888888889999999


Q ss_pred             ccCccccccCCCCC
Q 041065          132 IQLNRLDGSWRMCT  145 (148)
Q Consensus       132 l~~N~l~g~iP~~~  145 (148)
                      +++|++++.-+..+
T Consensus       270 l~~N~i~~~~~~~f  283 (330)
T 1xku_A          270 LHNNNISAIGSNDF  283 (330)
T ss_dssp             CCSSCCCCCCTTSS
T ss_pred             CCCCcCCccChhhc
Confidence            99999884333333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.35  E-value=3.3e-12  Score=99.35  Aligned_cols=94  Identities=18%  Similarity=0.071  Sum_probs=72.2

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|++|.+.+..|. .|..+++|++|+|++|.++...+..|.++++|++|++++|++++..|..+..+++|++|+
T Consensus        56 ~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            5688888888888876665 788888888888888888754444577888888888888888877777778888888888


Q ss_pred             ccCccccccCCCCCc
Q 041065          132 IQLNRLDGSWRMCTC  146 (148)
Q Consensus       132 l~~N~l~g~iP~~~~  146 (148)
                      +++|.+++..|..+.
T Consensus       135 l~~n~l~~~~~~~~~  149 (477)
T 2id5_A          135 VGDNDLVYISHRAFS  149 (477)
T ss_dssp             ECCTTCCEECTTSST
T ss_pred             CCCCccceeChhhcc
Confidence            888887766555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.35  E-value=2.2e-12  Score=101.92  Aligned_cols=89  Identities=21%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             CeEEEEcCCCCcc-ceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           53 RVINISLPNRGVN-GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        53 ~l~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      +++.|++++|.+. +.+|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|+
T Consensus       446 ~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          446 SLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             TCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cCcEEECcCCcCccccchh-hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence            4555555555554 34443 455555555555555555555555555555555555555555544444555555555555


Q ss_pred             ccCccccccCC
Q 041065          132 IQLNRLDGSWR  142 (148)
Q Consensus       132 l~~N~l~g~iP  142 (148)
                      +++|++++.+|
T Consensus       525 l~~N~~~~~~~  535 (570)
T 2z63_A          525 LHTNPWDCSCP  535 (570)
T ss_dssp             CCSSCBCCCTT
T ss_pred             ecCCcccCCCc
Confidence            55555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=1.8e-12  Score=88.66  Aligned_cols=87  Identities=16%  Similarity=0.151  Sum_probs=73.7

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCc--cccCCCCCcE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPA--EVGLLSHLEV  129 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~--~~~~l~~L~~  129 (148)
                      .+++.|++++|.+++. +  .+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|++
T Consensus        42 ~~L~~L~Ls~N~l~~~-~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL-D--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY  117 (176)
T ss_dssp             TCCSEEECCSSCCCEE-C--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             CCCCEEECCCCCCCcc-c--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence            3789999999999864 3  7899999999999999998543344588999999999999996 6776  7889999999


Q ss_pred             EEccCccccccCCC
Q 041065          130 LHIQLNRLDGSWRM  143 (148)
Q Consensus       130 L~l~~N~l~g~iP~  143 (148)
                      |++++|.++ .+|.
T Consensus       118 L~l~~N~i~-~~~~  130 (176)
T 1a9n_A          118 LCILRNPVT-NKKH  130 (176)
T ss_dssp             EECCSSGGG-GSTT
T ss_pred             EEecCCCCC-CcHh
Confidence            999999998 6665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.35  E-value=3.4e-13  Score=99.99  Aligned_cols=87  Identities=18%  Similarity=0.236  Sum_probs=62.5

Q ss_pred             CCeEEEEcCCCCccceecCCCC--CCCCCCcEEEcccCccccCCCccccCC-----CCCceeecCCCcccccCCccccCC
Q 041065           52 GRVINISLPNRGVNGTLHDFSF--SSFPHLAYLDLTWNGFFGTIPPQISNL-----SNLRYIYLGSNQFFGNIPAEVGLL  124 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~ls~n~l~g~~p~~~~~l-----~~L~~L~ls~n~l~g~~p~~~~~l  124 (148)
                      .++++|++++|.+++.+|. .+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++++..|..++.+
T Consensus        95 ~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPP-PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCC-CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CCccEEEccCCcccchhHH-HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4677777777777777775 44  6777777777777777765 6656555     777777777777776656677777


Q ss_pred             CCCcEEEccCcccccc
Q 041065          125 SHLEVLHIQLNRLDGS  140 (148)
Q Consensus       125 ~~L~~L~l~~N~l~g~  140 (148)
                      ++|++|++++|++.|.
T Consensus       173 ~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          173 PALSTLDLSDNPELGE  188 (312)
T ss_dssp             SSCCEEECCSCTTCHH
T ss_pred             CCCCEEECCCCCcCcc
Confidence            7777777777776654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.35  E-value=2.8e-12  Score=101.37  Aligned_cols=94  Identities=21%  Similarity=0.283  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccc-cCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFF-GTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~-g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|
T Consensus       421 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             TTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            5799999999999988886 8999999999999999997 6789999999999999999999998889999999999999


Q ss_pred             EccCccccccCCCCCc
Q 041065          131 HIQLNRLDGSWRMCTC  146 (148)
Q Consensus       131 ~l~~N~l~g~iP~~~~  146 (148)
                      ++++|++++..|..+.
T Consensus       500 ~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          500 NMASNQLKSVPDGIFD  515 (570)
T ss_dssp             ECCSSCCSCCCTTTTT
T ss_pred             eCCCCcCCCCCHHHhh
Confidence            9999999976666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.35  E-value=5.1e-12  Score=96.02  Aligned_cols=92  Identities=16%  Similarity=0.125  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCcc-ccCCCCCcEEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE-VGLLSHLEVLH  131 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L~~L~  131 (148)
                      +++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|.. +..+++|++|+
T Consensus        70 ~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             cCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            566777777777654444 6777777888888887777666666777777788888777777 45544 46777777777


Q ss_pred             ccCccccccCCCCCc
Q 041065          132 IQLNRLDGSWRMCTC  146 (148)
Q Consensus       132 l~~N~l~g~iP~~~~  146 (148)
                      +++|++++..|..++
T Consensus       148 L~~n~l~~~~~~~~~  162 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQ  162 (390)
T ss_dssp             CCSSCCCBCCTTTTS
T ss_pred             CCCCccCccChhhcc
Confidence            777777755554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.34  E-value=1.5e-12  Score=102.29  Aligned_cols=94  Identities=15%  Similarity=0.185  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCcccc--CCCccccCCCCCceeecCCCcccccCCcc-ccCCCCC
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFG--TIPPQISNLSNLRYIYLGSNQFFGNIPAE-VGLLSHL  127 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g--~~p~~~~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L  127 (148)
                      ...++.|++++|.+.+.+|. .+..+++|++|++++|.+++  .+|..+..+++|++|++++|++++.+|.. +..+++|
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            35788889998888877776 78888888888888888876  56667888888888888888888757764 6777788


Q ss_pred             cEEEccCccccccCCCCC
Q 041065          128 EVLHIQLNRLDGSWRMCT  145 (148)
Q Consensus       128 ~~L~l~~N~l~g~iP~~~  145 (148)
                      ++|++++|++++.+|..+
T Consensus       402 ~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             CEEECCSSCCCGGGGGSC
T ss_pred             CEEECcCCCCCcchhhhh
Confidence            888888888877776554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.33  E-value=7.1e-12  Score=96.83  Aligned_cols=88  Identities=20%  Similarity=0.179  Sum_probs=75.5

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      ..++.|+|++|.+.+..+. .|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            3578999999999876665 899999999999999999877778899999999999999999955455788999999999


Q ss_pred             ccCcccccc
Q 041065          132 IQLNRLDGS  140 (148)
Q Consensus       132 l~~N~l~g~  140 (148)
                      +++|++++.
T Consensus       143 L~~N~i~~~  151 (440)
T 3zyj_A          143 LRNNPIESI  151 (440)
T ss_dssp             CCSCCCCEE
T ss_pred             CCCCccccc
Confidence            999998843

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.33  E-value=2e-12  Score=101.46  Aligned_cols=101  Identities=17%  Similarity=0.136  Sum_probs=53.3

Q ss_pred             ccceeeCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCcccc-----------------------C
Q 041065           43 SKTSPCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQIS-----------------------N   99 (148)
Q Consensus        43 ~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~-----------------------~   99 (148)
                      +.++.+.....++.|++++|.+++..|. .+..+++|++|++++|.+++.+|..+.                       .
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~  189 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV  189 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence            3334443334455555555555544443 444445555555555555444443332                       3


Q ss_pred             CCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065          100 LSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus       100 l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      +++|++|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..++
T Consensus       190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~  234 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR  234 (487)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred             CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhc
Confidence            5566666666666664 3444666667777777777776 3565543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.33  E-value=2.8e-12  Score=101.12  Aligned_cols=91  Identities=23%  Similarity=0.231  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc-cCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG-NIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L  130 (148)
                      .++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..++++++|++|++++|++++ .+|..++.+++|++|
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  128 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL  128 (549)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CcccEEECCCCCcCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence            5788899999988876665 78888889999999998887666668888888888888888875 356677888888888


Q ss_pred             EccCccccccCCC
Q 041065          131 HIQLNRLDGSWRM  143 (148)
Q Consensus       131 ~l~~N~l~g~iP~  143 (148)
                      ++++|++.+.+|.
T Consensus       129 ~L~~n~~~~~~~~  141 (549)
T 2z81_A          129 RIGNVETFSEIRR  141 (549)
T ss_dssp             EEEESSSCCEECT
T ss_pred             ECCCCccccccCH
Confidence            8888876556663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.33  E-value=3.6e-12  Score=94.84  Aligned_cols=95  Identities=21%  Similarity=0.329  Sum_probs=72.9

Q ss_pred             CccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecC
Q 041065           40 NVSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLG  109 (148)
Q Consensus        40 ~c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls  109 (148)
                      .|.++.+.|...          ..++.|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            366787777532          3688999999999876554 78899999999999999997778889999999999999


Q ss_pred             CCcccccCCccccCCCCCcEEEccCcccc
Q 041065          110 SNQFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       110 ~n~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      +|+++ .+|..+.  ++|++|++++|+++
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~  134 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEIT  134 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCC
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCccc
Confidence            99887 5665432  45555555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.33  E-value=2.8e-12  Score=107.03  Aligned_cols=90  Identities=23%  Similarity=0.320  Sum_probs=74.0

Q ss_pred             CeEEEEcCCCCccceecCCCCC--CCCCCcEEEcccCccccCCCccccCCCCCceeecCC------CcccccCCccccCC
Q 041065           53 RVINISLPNRGVNGTLHDFSFS--SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS------NQFFGNIPAEVGLL  124 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~--~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~------n~l~g~~p~~~~~l  124 (148)
                      +++.|+|++|.++ .+|. .+.  .+++|+.|+|++|.+++ +|..+..+++|+.|+|++      |++.+.+|..+..+
T Consensus       729 ~L~~L~Ls~N~L~-~lp~-~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L  805 (876)
T 4ecn_A          729 LLTTIDLRFNKLT-SLSD-DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC  805 (876)
T ss_dssp             GCCEEECCSSCCC-CCCG-GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred             CccEEECCCCCCc-cchH-HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence            6888888888887 5665 665  78888888888888886 788888888888888866      77788888888888


Q ss_pred             CCCcEEEccCccccccCCCCCc
Q 041065          125 SHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus       125 ~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      ++|+.|+|++|++ +.||..++
T Consensus       806 ~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          806 PSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             SSCCEEECCSSCC-CBCCSCCC
T ss_pred             CCCCEEECCCCCC-CccCHhhc
Confidence            8888899988888 68887654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.33  E-value=2.1e-12  Score=92.15  Aligned_cols=90  Identities=16%  Similarity=0.131  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCc-cccCCCccccCCCCCceeecCC-CcccccCCccccCCCCCcE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNG-FFGTIPPQISNLSNLRYIYLGS-NQFFGNIPAEVGLLSHLEV  129 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~-l~g~~p~~~~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~  129 (148)
                      ..++.|++++|.+++..+. .+..+++|++|++++|. ++...+..|..+++|++|++++ |++++..+..|..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3678888888888755443 67788888888888886 7654455678888888888887 8888555567778888888


Q ss_pred             EEccCccccccCCC
Q 041065          130 LHIQLNRLDGSWRM  143 (148)
Q Consensus       130 L~l~~N~l~g~iP~  143 (148)
                      |++++|++++ +|.
T Consensus       110 L~l~~n~l~~-lp~  122 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD  122 (239)
T ss_dssp             EEEEEECCCS-CCC
T ss_pred             EeCCCCCCcc-ccc
Confidence            8888888774 665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.32  E-value=4e-12  Score=101.37  Aligned_cols=92  Identities=16%  Similarity=0.062  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .++++|++++|.+.+..|. .|..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..++.+++|++|+
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~  135 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY  135 (606)
T ss_dssp             TTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred             ccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence            5788889999888876675 788888999999999988877788888888888888888888865566788888888888


Q ss_pred             ccCccccc-cCCCC
Q 041065          132 IQLNRLDG-SWRMC  144 (148)
Q Consensus       132 l~~N~l~g-~iP~~  144 (148)
                      +++|++++ .+|..
T Consensus       136 L~~n~l~~~~~~~~  149 (606)
T 3t6q_A          136 LGSNHISSIKLPKG  149 (606)
T ss_dssp             CCSSCCCCCCCCTT
T ss_pred             CCCCcccccCcccc
Confidence            88888885 34544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.32  E-value=3.3e-12  Score=103.18  Aligned_cols=94  Identities=15%  Similarity=0.077  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .++++|++++|.+.+..|. .+..+++|++|++++|.+++..+..|.++++|++|++++|++++..|..|+++++|++|+
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred             CcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence            3566666666666655554 566677777777777777643333577777777777777777755556677777777777


Q ss_pred             ccCccccccCCCCCc
Q 041065          132 IQLNRLDGSWRMCTC  146 (148)
Q Consensus       132 l~~N~l~g~iP~~~~  146 (148)
                      +++|++++..|..++
T Consensus       128 Ls~n~l~~~~~~~~~  142 (680)
T 1ziw_A          128 LSHNGLSSTKLGTQV  142 (680)
T ss_dssp             CCSSCCSCCCCCSSS
T ss_pred             CCCCcccccCchhhc
Confidence            777777766665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=2.7e-12  Score=89.19  Aligned_cols=88  Identities=13%  Similarity=0.203  Sum_probs=76.0

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.. ++  .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        66 ~~L~~L~l~~n~~~~-~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           66 HNIKDLTINNIHATN-YN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             TTCSEEEEESCCCSC-CG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCEEEccCCCCCc-ch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            578999999996652 33  688899999999999999988888899999999999999999988888899999999999


Q ss_pred             ccCccccccCC
Q 041065          132 IQLNRLDGSWR  142 (148)
Q Consensus       132 l~~N~l~g~iP  142 (148)
                      +++|++.+.+|
T Consensus       143 L~~n~~i~~~~  153 (197)
T 4ezg_A          143 LSYNGAITDIM  153 (197)
T ss_dssp             CCSCTBCCCCG
T ss_pred             ccCCCCccccH
Confidence            99998444666

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.31  E-value=4.6e-12  Score=100.61  Aligned_cols=94  Identities=18%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCcccc--CCCccccCCCCCceeecCCCcccccCCcc-ccCCCCC
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFG--TIPPQISNLSNLRYIYLGSNQFFGNIPAE-VGLLSHL  127 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g--~~p~~~~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L  127 (148)
                      ..+++.|++++|.+++.+|. .+..+++|++|++++|.+++  .+|..+..+++|++|++++|++++.+|.. +..+++|
T Consensus       352 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            35688888888888876775 77888888888888888875  23456778888888888888888656653 6666777


Q ss_pred             cEEEccCccccccCCCCC
Q 041065          128 EVLHIQLNRLDGSWRMCT  145 (148)
Q Consensus       128 ~~L~l~~N~l~g~iP~~~  145 (148)
                      ++|++++|++++.+|..+
T Consensus       431 ~~L~l~~n~l~~~~~~~l  448 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCL  448 (562)
T ss_dssp             CEEECCSSCCCGGGGSSC
T ss_pred             CEEECCCCCCCcchhhhh
Confidence            777777777776666544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.31  E-value=3.8e-12  Score=102.86  Aligned_cols=90  Identities=18%  Similarity=0.134  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.++. +|...|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++.+++|++|+
T Consensus        73 ~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           73 PMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             TTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             cCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            467788888887774 3332577788888888888888765566777888888888888888777777777788888888


Q ss_pred             ccCccccccCC
Q 041065          132 IQLNRLDGSWR  142 (148)
Q Consensus       132 l~~N~l~g~iP  142 (148)
                      +++|++++..|
T Consensus       152 L~~n~l~~~~~  162 (680)
T 1ziw_A          152 LSNNKIQALKS  162 (680)
T ss_dssp             CCSSCCCCBCH
T ss_pred             ccCCcccccCH
Confidence            88887775444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.31  E-value=4.9e-12  Score=104.96  Aligned_cols=93  Identities=19%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCcc--ccCCCCCceeecCCCcccccCC-ccccCCCCCc
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQ--ISNLSNLRYIYLGSNQFFGNIP-AEVGLLSHLE  128 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~--~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~  128 (148)
                      .+++.|+|++|.+.+..|. .|.++++|++|+|++|.+++.+|..  +.++++|++|++++|.+++..+ ..++++++|+
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             TTCCEEECTTCCCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred             CCCCEEECCCCcCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence            4577777777777766565 6777777777777777777655554  6677777777777777765443 4567777777


Q ss_pred             EEEccCccccccCCCCC
Q 041065          129 VLHIQLNRLDGSWRMCT  145 (148)
Q Consensus       129 ~L~l~~N~l~g~iP~~~  145 (148)
                      +|++++|.+++..|..+
T Consensus       152 ~L~Ls~N~i~~~~~~~l  168 (844)
T 3j0a_A          152 SIDFSSNQIFLVCEHEL  168 (844)
T ss_dssp             EEEEESSCCCCCCSGGG
T ss_pred             EEECCCCcCCeeCHHHc
Confidence            77777777776655544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.30  E-value=2.9e-12  Score=95.49  Aligned_cols=91  Identities=19%  Similarity=0.184  Sum_probs=76.3

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus       193 ~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY  270 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence            4678888888888876655 7888999999999999998777778889999999999999998 7888899999999999


Q ss_pred             ccCccccccCCCC
Q 041065          132 IQLNRLDGSWRMC  144 (148)
Q Consensus       132 l~~N~l~g~iP~~  144 (148)
                      +++|++++.-+..
T Consensus       271 l~~N~l~~~~~~~  283 (332)
T 2ft3_A          271 LHTNNITKVGVND  283 (332)
T ss_dssp             CCSSCCCBCCTTS
T ss_pred             CCCCCCCccChhH
Confidence            9999998443333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.30  E-value=1.6e-12  Score=98.75  Aligned_cols=92  Identities=17%  Similarity=0.130  Sum_probs=79.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.++++++.+. .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            46788999999877 45642467899999999999999977777899999999999999999977778899999999999


Q ss_pred             ccCccccccCCCCC
Q 041065          132 IQLNRLDGSWRMCT  145 (148)
Q Consensus       132 l~~N~l~g~iP~~~  145 (148)
                      +++|+++ .+|..+
T Consensus       124 L~~n~l~-~l~~~~  136 (390)
T 3o6n_A          124 LERNDLS-SLPRGI  136 (390)
T ss_dssp             CCSSCCC-CCCTTT
T ss_pred             CCCCccC-cCCHHH
Confidence            9999999 777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.28  E-value=1.4e-11  Score=95.21  Aligned_cols=85  Identities=16%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.++ .+|  .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+
T Consensus       185 ~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (440)
T 3zyj_A          185 SNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN  261 (440)
T ss_dssp             SSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred             cccCeecCCCCcCc-ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence            35666666666665 344  366677777777777777766677777777777777777777766666777777778888


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      |++|++++
T Consensus       262 L~~N~l~~  269 (440)
T 3zyj_A          262 LAHNNLTL  269 (440)
T ss_dssp             CTTSCCCC
T ss_pred             CCCCCCCc
Confidence            88777773

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.28  E-value=1.5e-11  Score=95.39  Aligned_cols=85  Identities=18%  Similarity=0.181  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++ +|  .+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|+
T Consensus       196 ~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  272 (452)
T 3zyi_A          196 FNLKYLNLGMCNIKD-MP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN  272 (452)
T ss_dssp             TTCCEEECTTSCCSS-CC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcccc-cc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence            356677777777663 34  466777788888888888777777788888888888888888877777788888888888


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      |++|++++
T Consensus       273 L~~N~l~~  280 (452)
T 3zyi_A          273 LAHNNLSS  280 (452)
T ss_dssp             CCSSCCSC
T ss_pred             CCCCcCCc
Confidence            88888873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.27  E-value=1.7e-11  Score=98.20  Aligned_cols=87  Identities=16%  Similarity=0.137  Sum_probs=77.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|++|.+.+..+. .|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus        99 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  177 (597)
T 3oja_B           99 HTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  177 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence            5799999999999986665 789999999999999999954444578999999999999999988888899999999999


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      +++|.+++
T Consensus       178 L~~N~l~~  185 (597)
T 3oja_B          178 LSSNRLTH  185 (597)
T ss_dssp             CTTSCCSB
T ss_pred             CcCCCCCC
Confidence            99999885

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.26  E-value=9.4e-12  Score=84.99  Aligned_cols=86  Identities=14%  Similarity=0.069  Sum_probs=72.3

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCC-CCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFP-HLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~-~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.|++++|.++. ++  .+..+. +|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        19 ~~L~~L~l~~n~l~~-i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCCS-CC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCch-hH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            478999999999984 55  455555 999999999999864  678999999999999999995444445899999999


Q ss_pred             EccCccccccCCC
Q 041065          131 HIQLNRLDGSWRM  143 (148)
Q Consensus       131 ~l~~N~l~g~iP~  143 (148)
                      ++++|+++ .+|.
T Consensus        94 ~L~~N~i~-~~~~  105 (176)
T 1a9n_A           94 ILTNNSLV-ELGD  105 (176)
T ss_dssp             ECCSCCCC-CGGG
T ss_pred             ECCCCcCC-cchh
Confidence            99999996 6765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.26  E-value=1.6e-11  Score=92.21  Aligned_cols=93  Identities=24%  Similarity=0.279  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCc--cccCCCCCcE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPA--EVGLLSHLEV  129 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~--~~~~l~~L~~  129 (148)
                      .+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI  153 (353)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred             CCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence            5789999999999876665 7889999999999999998543344888999999999999988 4555  6788888888


Q ss_pred             EEccCcc-ccccCCCCCc
Q 041065          130 LHIQLNR-LDGSWRMCTC  146 (148)
Q Consensus       130 L~l~~N~-l~g~iP~~~~  146 (148)
                      |++++|+ +++..|..++
T Consensus       154 L~l~~n~~~~~~~~~~~~  171 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFA  171 (353)
T ss_dssp             EEEEESSSCCEECTTTTT
T ss_pred             EECCCCccccccCHHHcc
Confidence            8888884 5533344443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.23  E-value=9.7e-12  Score=99.52  Aligned_cols=98  Identities=18%  Similarity=0.289  Sum_probs=62.1

Q ss_pred             CCCcCCCCCc-----cccce-eeCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCce
Q 041065           32 SSCINDATNV-----SSKTS-PCNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRY  105 (148)
Q Consensus        32 ~~W~~~~~~c-----~~~gv-~c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~  105 (148)
                      .+|..+..+|     .|.++ .|. ..+++.|++++|++++ +|. .+  +++|++|++++|.++ .+|   ..+++|++
T Consensus        34 ~~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~  104 (571)
T 3cvr_A           34 DKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEY  104 (571)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred             HHHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCE
Confidence            3565555667     68888 675 3578888888888876 664 34  366777777777776 555   34566666


Q ss_pred             eecCCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065          106 IYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       106 L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  143 (148)
                      |++++|++++ +|. +..  +|++|++++|++++ ||.
T Consensus       105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~  137 (571)
T 3cvr_A          105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE  137 (571)
T ss_dssp             EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC
T ss_pred             EEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC
Confidence            6666666664 555 433  55555555555553 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.22  E-value=2.3e-11  Score=95.50  Aligned_cols=89  Identities=19%  Similarity=0.260  Sum_probs=71.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|++|.+++. +  ....+++|+.|+|++|.+++ +|+.+..+++|+.|++++|.+++ +|..+..+++|+.|+
T Consensus       169 ~~L~~L~Ls~N~l~~~-~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDV-K--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD  243 (487)
T ss_dssp             TTCCEEECTTSCCCEE-E--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred             CcccEEecCCCccccc-c--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEE
Confidence            4566666666666644 2  23458889999999999986 55568999999999999999995 888899999999999


Q ss_pred             ccCcccc-ccCCCCC
Q 041065          132 IQLNRLD-GSWRMCT  145 (148)
Q Consensus       132 l~~N~l~-g~iP~~~  145 (148)
                      +++|.+. +.+|..+
T Consensus       244 l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          244 LRGNGFHCGTLRDFF  258 (487)
T ss_dssp             CTTCCBCHHHHHHHH
T ss_pred             cCCCCCcCcchHHHH
Confidence            9999998 6666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.22  E-value=1.4e-11  Score=91.19  Aligned_cols=86  Identities=16%  Similarity=0.065  Sum_probs=72.3

Q ss_pred             CeEEEEcCCCCccceecCCCC--CCCCCCcEEEcccCccccCCC----ccccCCCCCceeecCCCcccccCCccccCCCC
Q 041065           53 RVINISLPNRGVNGTLHDFSF--SSFPHLAYLDLTWNGFFGTIP----PQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH  126 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~ls~n~l~g~~p----~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~  126 (148)
                      ++++|++++|.+.+..|. .+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++++..|..+..+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            488999999999988886 66  889999999999999987655    34557889999999999998777788889999


Q ss_pred             CcEEEccCccccc
Q 041065          127 LEVLHIQLNRLDG  139 (148)
Q Consensus       127 L~~L~l~~N~l~g  139 (148)
                      |++|++++|++.+
T Consensus       171 L~~L~Ls~N~l~~  183 (310)
T 4glp_A          171 LTSLDLSDNPGLG  183 (310)
T ss_dssp             CCEEECCSCTTCH
T ss_pred             CCEEECCCCCCcc
Confidence            9999999998765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.22  E-value=8.6e-12  Score=92.39  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=28.6

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccC--CCccc--cCCCCCceeecCCCccc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT--IPPQI--SNLSNLRYIYLGSNQFF  114 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~--~p~~~--~~l~~L~~L~ls~n~l~  114 (148)
                      +++.|++++|.+.+..+. .+..+++|++|++++|.+.+.  +|..+  ..+++|++|++++|+++
T Consensus       150 ~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          150 GLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             TCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             CCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            455555555555543333 455555555555555554433  12222  34444444444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.21  E-value=5.2e-12  Score=93.44  Aligned_cols=92  Identities=16%  Similarity=0.123  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccC--CC--ccccC---------------------------C
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT--IP--PQISN---------------------------L  100 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~--~p--~~~~~---------------------------l  100 (148)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+.+.  ++  ..+..                           +
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            3566777777776655444 566667777777777765431  11  11233                           3


Q ss_pred             CCCceeecCCCcccccCCccccCC---CCCcEEEccCccccccCCCCC
Q 041065          101 SNLRYIYLGSNQFFGNIPAEVGLL---SHLEVLHIQLNRLDGSWRMCT  145 (148)
Q Consensus       101 ~~L~~L~ls~n~l~g~~p~~~~~l---~~L~~L~l~~N~l~g~iP~~~  145 (148)
                      ++|++|+|++|++++.+|..+..+   ++|++|++++|+++ .+|..+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~  270 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL  270 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence            455555555555554445444444   35555555555555 455443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.20  E-value=3.3e-11  Score=89.46  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             CeEEEEcCCCCccceecCCCC-CCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           53 RVINISLPNRGVNGTLHDFSF-SSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~-~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      +++.|++++|.+.+..+. .+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|+
T Consensus       145 ~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          145 RVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS  220 (317)
T ss_dssp             SEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred             CCCEEECCCCCCCcccHH-HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence            455566666655544443 33 2456666666666666533 2 23346777777777777773 555577778888888


Q ss_pred             ccCccccccCCCCCc
Q 041065          132 IQLNRLDGSWRMCTC  146 (148)
Q Consensus       132 l~~N~l~g~iP~~~~  146 (148)
                      +++|+++ .+|..+.
T Consensus       221 L~~N~l~-~l~~~~~  234 (317)
T 3o53_A          221 LRNNKLV-LIEKALR  234 (317)
T ss_dssp             CTTSCCC-EECTTCC
T ss_pred             CcCCccc-chhhHhh
Confidence            8888887 5676554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.20  E-value=4.5e-11  Score=88.71  Aligned_cols=86  Identities=20%  Similarity=0.298  Sum_probs=49.8

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++. +  ....+++|++|++++|.+++ +|+.+..+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus       169 ~~L~~L~L~~N~l~~~-~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDV-K--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD  243 (317)
T ss_dssp             TTCCEEECTTSCCCEE-E--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred             CcCCEEECCCCcCccc-c--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence            3566666666666533 2  22346666666666666653 3444666666666666666666 4555566666666666


Q ss_pred             ccCcccc-ccCC
Q 041065          132 IQLNRLD-GSWR  142 (148)
Q Consensus       132 l~~N~l~-g~iP  142 (148)
                      +++|+++ +.+|
T Consensus       244 l~~N~~~~~~~~  255 (317)
T 3o53_A          244 LRGNGFHCGTLR  255 (317)
T ss_dssp             CTTCCCBHHHHH
T ss_pred             ccCCCccCcCHH
Confidence            6666665 4433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.18  E-value=3e-11  Score=86.04  Aligned_cols=81  Identities=12%  Similarity=0.162  Sum_probs=40.1

Q ss_pred             CCeEEEEcCCCC-ccceecCCCCCCCCCCcEEEccc-CccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCc-
Q 041065           52 GRVINISLPNRG-VNGTLHDFSFSSFPHLAYLDLTW-NGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLE-  128 (148)
Q Consensus        52 ~~l~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~-  128 (148)
                      .+++.|++++|. ++...+. .|..+++|++|++++ |.+++..+..|..+++|++|++++|++++ +|. +..+++|+ 
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~  131 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI  131 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred             CCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence            345556666654 4432222 455555555555555 55554333445555555555555555542 443 44444444 


Q ss_pred             --EEEccCc
Q 041065          129 --VLHIQLN  135 (148)
Q Consensus       129 --~L~l~~N  135 (148)
                        +|++++|
T Consensus       132 L~~L~l~~N  140 (239)
T 2xwt_C          132 FFILEITDN  140 (239)
T ss_dssp             EEEEEEESC
T ss_pred             ccEEECCCC
Confidence              4444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.17  E-value=4.7e-11  Score=89.79  Aligned_cols=101  Identities=19%  Similarity=0.253  Sum_probs=81.4

Q ss_pred             ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCc-cccCCCCCce-eec
Q 041065           41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPP-QISNLSNLRY-IYL  108 (148)
Q Consensus        41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~-L~l  108 (148)
                      |.+..|.|...          ..+++|+|++|.++ .+|...|.++++|++|+|++|.+.+.+|. .|.++++++. +.+
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            55667777531          36899999999998 45544799999999999999999777765 5788888775 666


Q ss_pred             CCCcccccCCccccCCCCCcEEEccCccccccCCC
Q 041065          109 GSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       109 s~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  143 (148)
                      ..|++++..|..|..+++|++|++++|+++ .+|+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~  121 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD  121 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCc
Confidence            779999766788999999999999999998 4443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.09  E-value=1e-10  Score=91.15  Aligned_cols=86  Identities=22%  Similarity=0.270  Sum_probs=44.4

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccc--cCCccccCC------
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG--NIPAEVGLL------  124 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g--~~p~~~~~l------  124 (148)
                      +++.|++++|.+++ +|. .   +++|++|++++|.++ .+|.   .+++|++|++++|++++  .+|..++.+      
T Consensus       318 ~L~~L~Ls~N~l~~-lp~-~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~  388 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPA-L---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL  388 (454)
T ss_dssp             TCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred             cCCEEECCCCcccc-ccc-c---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence            45666666666654 443 2   467788888888777 4665   46788888888888887  678777777      


Q ss_pred             -------CCCcEEEccCccccc--cCCCCCcC
Q 041065          125 -------SHLEVLHIQLNRLDG--SWRMCTCT  147 (148)
Q Consensus       125 -------~~L~~L~l~~N~l~g--~iP~~~~~  147 (148)
                             ++|+.|++++|+++|  .||.++..
T Consensus       389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~  420 (454)
T 1jl5_A          389 AEVPELPQNLKQLHVETNPLREFPDIPESVED  420 (454)
T ss_dssp             --------------------------------
T ss_pred             cccccccCcCCEEECCCCcCCccccchhhHhh
Confidence                   778888888888887  78877653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.06  E-value=9.6e-11  Score=93.79  Aligned_cols=85  Identities=18%  Similarity=0.195  Sum_probs=56.2

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCC-------ceeecCCCcccccCCccccCC
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNL-------RYIYLGSNQFFGNIPAEVGLL  124 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L-------~~L~ls~n~l~g~~p~~~~~l  124 (148)
                      .+++.|++++|.+++ +|.  +.  ++|++|++++|.++ .+|. +..  +|       +.|+|++|+++ .+|..+..+
T Consensus       160 ~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l  229 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL  229 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred             CCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence            345566666666554 442  33  66777777777776 5565 443  56       78888888887 677777778


Q ss_pred             CCCcEEEccCccccccCCCCCc
Q 041065          125 SHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus       125 ~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      ++|+.|+|++|+++|.+|..++
T Consensus       230 ~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             CTTEEEECCSSSCCHHHHHHHH
T ss_pred             CCCCEEEeeCCcCCCcCHHHHH
Confidence            8888888888888877776543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.05  E-value=2.8e-10  Score=84.91  Aligned_cols=86  Identities=17%  Similarity=0.285  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.. ++  .+..+++|++|++++|.+++.  +.+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus       243 ~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          243 SQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             TTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred             CCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence            456666666666653 22  466777777777777777643  3467778888888888888777777778888888888


Q ss_pred             ccCccccccCC
Q 041065          132 IQLNRLDGSWR  142 (148)
Q Consensus       132 l~~N~l~g~iP  142 (148)
                      +++|++++..|
T Consensus       318 L~~n~l~~~~~  328 (347)
T 4fmz_A          318 LSQNHITDIRP  328 (347)
T ss_dssp             CCSSSCCCCGG
T ss_pred             ccCCccccccC
Confidence            88888875544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.04  E-value=3.9e-10  Score=82.89  Aligned_cols=58  Identities=26%  Similarity=0.366  Sum_probs=25.6

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCccc
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFF  114 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~  114 (148)
                      .+++.|++++|.+.+ ++  .+..+++|++|++++|.+++.  +.+..+++|++|++++|+++
T Consensus        90 ~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A           90 KNLGWLFLDENKVKD-LS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             TTCCEEECCSSCCCC-GG--GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCCC-Ch--hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence            345555555555543 22  244444444444444444421  23334444444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.04  E-value=1.6e-10  Score=86.24  Aligned_cols=83  Identities=16%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      ..+++.|++++|.+.+. +  .+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|  +..+++|+.|
T Consensus       264 l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  338 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDI-S--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA  338 (347)
T ss_dssp             CTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred             CCCcCEEEccCCccCCC-h--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence            35799999999998863 4  68899999999999999998888889999999999999999996555  8899999999


Q ss_pred             EccCcccc
Q 041065          131 HIQLNRLD  138 (148)
Q Consensus       131 ~l~~N~l~  138 (148)
                      ++++|.|+
T Consensus       339 ~l~~N~i~  346 (347)
T 4fmz_A          339 DFANQVIK  346 (347)
T ss_dssp             SSSCC---
T ss_pred             ehhhhccc
Confidence            99999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.04  E-value=6.9e-10  Score=81.57  Aligned_cols=79  Identities=23%  Similarity=0.333  Sum_probs=34.9

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+.+ ++  .+..+++|++|++++|.+++.  +.+..+++|++|++++|++++. +. +..+++|+.|++
T Consensus       113 ~L~~L~L~~n~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L  185 (291)
T 1h6t_A          113 KLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYL  185 (291)
T ss_dssp             TCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCC-Ch--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEEC
Confidence            34444444444442 12  344444444444444444432  2344444444444444444422 22 444444444444


Q ss_pred             cCcccc
Q 041065          133 QLNRLD  138 (148)
Q Consensus       133 ~~N~l~  138 (148)
                      ++|+++
T Consensus       186 ~~N~i~  191 (291)
T 1h6t_A          186 SKNHIS  191 (291)
T ss_dssp             CSSCCC
T ss_pred             CCCcCC
Confidence            444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.02  E-value=6.4e-10  Score=80.66  Aligned_cols=80  Identities=25%  Similarity=0.350  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++ ++.  +.. ++|++|++++|.+++ + +.+..+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        85 ~~L~~L~L~~N~l~~-l~~--~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~  156 (263)
T 1xeu_A           85 TKLEELSVNRNRLKN-LNG--IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLD  156 (263)
T ss_dssp             SSCCEEECCSSCCSC-CTT--CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEE
T ss_pred             CCCCEEECCCCccCC-cCc--ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEE
Confidence            457777777777664 332  222 566666666666653 2 235566666666666666653 33 455566666666


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      +++|++++
T Consensus       157 L~~N~i~~  164 (263)
T 1xeu_A          157 LHGNEITN  164 (263)
T ss_dssp             CTTSCCCB
T ss_pred             CCCCcCcc
Confidence            66666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.01  E-value=5.5e-10  Score=86.83  Aligned_cols=79  Identities=19%  Similarity=0.240  Sum_probs=41.4

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      ++.|++++|.+.+..+   +..+++|+.|++++|.+++.  +.+..+++|++|++++|++++..|  +..+++|+.|+++
T Consensus       311 L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  383 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN  383 (466)
T ss_dssp             CSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred             CCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence            4444444444443221   34445555555555555432  245555666666666666665444  5566666666666


Q ss_pred             Cccccc
Q 041065          134 LNRLDG  139 (148)
Q Consensus       134 ~N~l~g  139 (148)
                      +|.+++
T Consensus       384 ~n~~~~  389 (466)
T 1o6v_A          384 DQAWTN  389 (466)
T ss_dssp             CEEEEC
T ss_pred             CCcccC
Confidence            666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.00  E-value=1e-09  Score=81.23  Aligned_cols=80  Identities=24%  Similarity=0.422  Sum_probs=38.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+ ++  .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus        85 ~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  157 (308)
T 1h6u_A           85 TKITELELSGNPLKN-VS--AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS  157 (308)
T ss_dssp             CSCCEEECCSCCCSC-CG--GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred             CCCCEEEccCCcCCC-ch--hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEE
Confidence            456666666666553 22  34555555555555555543 221 4444455555555544442 222 44444444444


Q ss_pred             ccCcccc
Q 041065          132 IQLNRLD  138 (148)
Q Consensus       132 l~~N~l~  138 (148)
                      +++|+++
T Consensus       158 l~~n~l~  164 (308)
T 1h6u_A          158 IGNAQVS  164 (308)
T ss_dssp             CCSSCCC
T ss_pred             ccCCcCC
Confidence            4444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.99  E-value=1.6e-09  Score=84.48  Aligned_cols=78  Identities=18%  Similarity=0.240  Sum_probs=56.4

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++.    .+..+++|++|++++|.+++. +  ++++++|++|++++|++++ +|  ++.+++|++|+
T Consensus        64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence            4677777777777652    266777777777777777753 3  6777778888888887775 44  67777888888


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      +++|++++
T Consensus       134 l~~N~l~~  141 (457)
T 3bz5_A          134 CARNTLTE  141 (457)
T ss_dssp             CTTSCCSC
T ss_pred             CCCCccce
Confidence            88887775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.99  E-value=1e-09  Score=88.44  Aligned_cols=13  Identities=8%  Similarity=0.036  Sum_probs=5.9

Q ss_pred             CeEEEEcCCCCcc
Q 041065           53 RVINISLPNRGVN   65 (148)
Q Consensus        53 ~l~~L~l~~n~l~   65 (148)
                      +++.|+|++|.+.
T Consensus        88 ~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           88 NLGWLFLDENKIK  100 (605)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             CCCEEECcCCCCC
Confidence            3444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.98  E-value=2.2e-09  Score=83.57  Aligned_cols=81  Identities=21%  Similarity=0.282  Sum_probs=50.6

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      ++++|++++|.+++ +|  .+..+++|++|++++|.+++ +|..+   .+|++|++++|++++ +| .++.+++|++|++
T Consensus       132 ~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            45666666666654 44  36666777777777776664 44332   366666666666664 55 4667777777777


Q ss_pred             cCccccccCCC
Q 041065          133 QLNRLDGSWRM  143 (148)
Q Consensus       133 ~~N~l~g~iP~  143 (148)
                      ++|++++ +|.
T Consensus       203 ~~N~l~~-l~~  212 (454)
T 1jl5_A          203 DNNSLKK-LPD  212 (454)
T ss_dssp             CSSCCSS-CCC
T ss_pred             CCCcCCc-CCC
Confidence            7777764 443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.98  E-value=1e-09  Score=81.20  Aligned_cols=79  Identities=22%  Similarity=0.411  Sum_probs=33.6

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+.+ ++  .+..+++|++|++++|.+++..+  +..+++|++|++++|++++ ++. +..+++|+.|++
T Consensus       108 ~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  180 (308)
T 1h6u_A          108 SIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKA  180 (308)
T ss_dssp             TCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEEC
Confidence            45555555555543 22  24444444444444444442211  3344444444444444442 222 333444444444


Q ss_pred             cCcccc
Q 041065          133 QLNRLD  138 (148)
Q Consensus       133 ~~N~l~  138 (148)
                      ++|+++
T Consensus       181 ~~n~l~  186 (308)
T 1h6u_A          181 DDNKIS  186 (308)
T ss_dssp             CSSCCC
T ss_pred             CCCccC
Confidence            444333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.97  E-value=5e-10  Score=90.49  Aligned_cols=82  Identities=17%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+++ +|    ..+++|+.|++++|.++ .+|.   .+++|++|++++|+++ .+|..+..+++|+.|+|
T Consensus       222 ~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            45666666666553 33    24467778888888777 4565   5678889999999998 78888889999999999


Q ss_pred             cCccccccCCCC
Q 041065          133 QLNRLDGSWRMC  144 (148)
Q Consensus       133 ~~N~l~g~iP~~  144 (148)
                      ++|+++|.+|..
T Consensus       292 ~~N~l~~~~~~~  303 (622)
T 3g06_A          292 EGNPLSERTLQA  303 (622)
T ss_dssp             CSCCCCHHHHHH
T ss_pred             cCCCCCCcCHHH
Confidence            999988877653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.97  E-value=1.5e-09  Score=78.64  Aligned_cols=82  Identities=18%  Similarity=0.296  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++. +  .+..+++|++|++++|.+++ +|. +.. ++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        63 ~~L~~L~L~~N~i~~~-~--~l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           63 TNLKELHLSHNQISDL-S--PLKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS  134 (263)
T ss_dssp             TTCCEEECCSSCCCCC-G--GGTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCCC-h--hhccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence            5788999999988753 3  27888999999999999885 443 333 889999999999985 44 588999999999


Q ss_pred             ccCccccccCC
Q 041065          132 IQLNRLDGSWR  142 (148)
Q Consensus       132 l~~N~l~g~iP  142 (148)
                      +++|++++ +|
T Consensus       135 Ls~N~i~~-~~  144 (263)
T 1xeu_A          135 IRNNKLKS-IV  144 (263)
T ss_dssp             CTTSCCCB-CG
T ss_pred             CCCCcCCC-Ch
Confidence            99999984 44

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.96  E-value=3e-09  Score=82.85  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=48.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+++ +|   +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|  ++.+++|+.|++
T Consensus       171 ~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l  240 (457)
T 3bz5_A          171 QLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC  240 (457)
T ss_dssp             TCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred             cCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence            45556666665554 22   45566666666666666543   25666677777777777764 55  666677777777


Q ss_pred             cCcccccc
Q 041065          133 QLNRLDGS  140 (148)
Q Consensus       133 ~~N~l~g~  140 (148)
                      ++|++++.
T Consensus       241 ~~N~l~~~  248 (457)
T 3bz5_A          241 SVNPLTEL  248 (457)
T ss_dssp             CSSCCSCC
T ss_pred             eCCcCCCc
Confidence            77777653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.96  E-value=1.8e-09  Score=86.94  Aligned_cols=80  Identities=24%  Similarity=0.375  Sum_probs=39.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|+|++|.+.+ ++  .+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+
T Consensus       109 ~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~  181 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  181 (605)
T ss_dssp             TTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence            345666666666553 22  344555555555555555432  334445555555555555543322  44444444444


Q ss_pred             ccCcccc
Q 041065          132 IQLNRLD  138 (148)
Q Consensus       132 l~~N~l~  138 (148)
                      |++|+++
T Consensus       182 Ls~N~i~  188 (605)
T 1m9s_A          182 LSKNHIS  188 (605)
T ss_dssp             CCSSCCC
T ss_pred             CcCCCCC
Confidence            4444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.95  E-value=1.3e-09  Score=84.65  Aligned_cols=83  Identities=19%  Similarity=0.338  Sum_probs=54.5

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      +++.|++++|.+.+. +  .+..+++|+.|++++|.+++..|  +..+++|++|++++|.+++.  ..+..+++|+.|++
T Consensus       288 ~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  360 (466)
T 1o6v_A          288 ALTNLELNENQLEDI-S--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA  360 (466)
T ss_dssp             TCSEEECCSSCCSCC-G--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             ccCeEEcCCCcccCc-h--hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence            455555555555432 2  25566667777777777665444  56677777777777777743  35777788888888


Q ss_pred             cCccccccCC
Q 041065          133 QLNRLDGSWR  142 (148)
Q Consensus       133 ~~N~l~g~iP  142 (148)
                      ++|++++.+|
T Consensus       361 ~~n~l~~~~~  370 (466)
T 1o6v_A          361 GHNQISDLTP  370 (466)
T ss_dssp             CSSCCCBCGG
T ss_pred             CCCccCccch
Confidence            8888887665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.94  E-value=5e-10  Score=90.44  Aligned_cols=94  Identities=24%  Similarity=0.316  Sum_probs=44.8

Q ss_pred             CCCcCCCCCcccccee--------eCCCCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCC
Q 041065           32 SSCINDATNVSSKTSP--------CNDAGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNL  103 (148)
Q Consensus        32 ~~W~~~~~~c~~~gv~--------c~~~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L  103 (148)
                      ..|....++|.|.|..        |. ...++.|++++|+++ .+|. .+.  ++|++|++++|.++ .+|.   .+++|
T Consensus        13 ~~W~~~~~~~~~~~r~~~~~~~~~c~-~~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~-~lp~---~l~~L   83 (622)
T 3g06_A           13 SAWRRAAPAEESRGRAAVVQKMRACL-NNGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPEL   83 (622)
T ss_dssp             HHHHHTCCGGGHHHHHHHHHHHHHHH-HHCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred             HHHHhcCCcchhccccccCccccccc-CCCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence            3465555667775432        21 123556666666655 4443 232  45555555555554 3333   33445


Q ss_pred             ceeecCCCcccccCCccccCCCCCcEEEccCcccc
Q 041065          104 RYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       104 ~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      ++|+|++|+++ .+|.   .+++|++|++++|+++
T Consensus        84 ~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           84 RTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             CEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            55555555554 3433   3334444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.94  E-value=2.9e-10  Score=84.37  Aligned_cols=84  Identities=18%  Similarity=0.102  Sum_probs=49.4

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccC-CCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT-IPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .++.+++++|.+.+..+  .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus        71 ~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             cceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            45555666665554443  244566666666666666544 555556666666666666666655555566666666666


Q ss_pred             ccCc-ccc
Q 041065          132 IQLN-RLD  138 (148)
Q Consensus       132 l~~N-~l~  138 (148)
                      +++| .++
T Consensus       149 L~~~~~l~  156 (336)
T 2ast_B          149 LSGCSGFS  156 (336)
T ss_dssp             CTTCBSCC
T ss_pred             CCCCCCCC
Confidence            6666 444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.94  E-value=9.1e-11  Score=89.07  Aligned_cols=86  Identities=16%  Similarity=0.167  Sum_probs=37.8

Q ss_pred             CeEEEEcCCCCcc----ceecCCCCCCCCCCcEEEcccCccccC----CCccc--cCCCCCceeecCCCcccc----cCC
Q 041065           53 RVINISLPNRGVN----GTLHDFSFSSFPHLAYLDLTWNGFFGT----IPPQI--SNLSNLRYIYLGSNQFFG----NIP  118 (148)
Q Consensus        53 ~l~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~--~~l~~L~~L~ls~n~l~g----~~p  118 (148)
                      +++.|+|++|.++    ..++. .+..+++|++|+|++|.+++.    ++..+  +.+++|++|+|++|.+++    .+|
T Consensus       217 ~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             CccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            3444444444443    23332 344444444444444444432    23333  224445555555555543    244


Q ss_pred             ccc-cCCCCCcEEEccCccccc
Q 041065          119 AEV-GLLSHLEVLHIQLNRLDG  139 (148)
Q Consensus       119 ~~~-~~l~~L~~L~l~~N~l~g  139 (148)
                      ..+ .++++|++|++++|++++
T Consensus       296 ~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          296 TVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhcCCCceEEEccCCcCCc
Confidence            433 334455555555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.92  E-value=1.2e-10  Score=86.55  Aligned_cols=87  Identities=22%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCCccce-ecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCC-ccccc-CCccccCCCCCc
Q 041065           52 GRVINISLPNRGVNGT-LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSN-QFFGN-IPAEVGLLSHLE  128 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n-~l~g~-~p~~~~~l~~L~  128 (148)
                      .++++|++++|.+.+. ++. .+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|+
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            4688888888887654 554 5777888888888888887777777778888888888888 56652 566677778888


Q ss_pred             EEEccCc-cccc
Q 041065          129 VLHIQLN-RLDG  139 (148)
Q Consensus       129 ~L~l~~N-~l~g  139 (148)
                      +|++++| .+++
T Consensus       172 ~L~l~~~~~l~~  183 (336)
T 2ast_B          172 ELNLSWCFDFTE  183 (336)
T ss_dssp             EEECCCCTTCCH
T ss_pred             EEcCCCCCCcCh
Confidence            8888887 7664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.90  E-value=7.2e-12  Score=87.12  Aligned_cols=65  Identities=25%  Similarity=0.342  Sum_probs=35.2

Q ss_pred             CCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcEEEccCccccccCCC
Q 041065           76 FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus        76 l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L~l~~N~l~g~iP~  143 (148)
                      +++|++|++++|.+++ +| .+..+++|++|++++|++++ ++  ..+..+++|++|++++|++++.+|.
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            3444444554444443 22 34445555666666666552 22  2466666777777777776655443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.88  E-value=1.3e-10  Score=87.60  Aligned_cols=86  Identities=16%  Similarity=0.193  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCCccceecCCCCCCC-----CCCcEEEcccCccccCCCccc----cCC-CCCceeecCCCcccccCCccc-
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSF-----PHLAYLDLTWNGFFGTIPPQI----SNL-SNLRYIYLGSNQFFGNIPAEV-  121 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l-----~~L~~L~ls~n~l~g~~p~~~----~~l-~~L~~L~ls~n~l~g~~p~~~-  121 (148)
                      ++++|++++|.+.+..+. .+..+     ++|++|++++|.+++..+..+    ..+ ++|++|++++|++++..+..+ 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            688888888888765443 44443     788888888888876665543    333 788888888888876554443 


Q ss_pred             ---cC-CCCCcEEEccCccccc
Q 041065          122 ---GL-LSHLEVLHIQLNRLDG  139 (148)
Q Consensus       122 ---~~-l~~L~~L~l~~N~l~g  139 (148)
                         .. .++|++|++++|+++.
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCceeEEEccCCcCCH
Confidence               33 2588888888888874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.87  E-value=1.8e-11  Score=85.08  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=72.3

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+.+ +|  .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|+
T Consensus        48 ~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            579999999999886 55  6888999999999999998 688877788999999999999995 56 688889999999


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      +++|++++
T Consensus       122 l~~N~i~~  129 (198)
T 1ds9_A          122 MSNNKITN  129 (198)
T ss_dssp             ESEEECCC
T ss_pred             CCCCcCCc
Confidence            99999883

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.86  E-value=4.1e-10  Score=85.43  Aligned_cols=87  Identities=20%  Similarity=0.248  Sum_probs=62.5

Q ss_pred             CCeEEEEcCCCCcc--c---eecCCCCCCCCCCcEEEcccCccc----cCCCccccCCCCCceeecCCCccccc----CC
Q 041065           52 GRVINISLPNRGVN--G---TLHDFSFSSFPHLAYLDLTWNGFF----GTIPPQISNLSNLRYIYLGSNQFFGN----IP  118 (148)
Q Consensus        52 ~~l~~L~l~~n~l~--~---~~p~~~~~~l~~L~~L~ls~n~l~----g~~p~~~~~l~~L~~L~ls~n~l~g~----~p  118 (148)
                      .+++.|++++|.+.  +   .++. .+..+++|++|+|++|.++    +.+|..+..+++|++|+|++|.+++.    +|
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~-~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHT-TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHH-HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            35777777777766  2   2332 5667788888888888875    55677777788888888888888754    45


Q ss_pred             ccc--cCCCCCcEEEccCccccc
Q 041065          119 AEV--GLLSHLEVLHIQLNRLDG  139 (148)
Q Consensus       119 ~~~--~~l~~L~~L~l~~N~l~g  139 (148)
                      ..+  +.+++|++|+|++|.+++
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHhhccCCCeEEEECcCCcCCH
Confidence            555  347888888888888876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.81  E-value=4.5e-09  Score=76.67  Aligned_cols=67  Identities=24%  Similarity=0.398  Sum_probs=51.5

Q ss_pred             CCCCCcEEEcccCcccc--CCCccccCCCCCceeecCCCcccccCCccccCCC--CCcEEEccCccccccCCC
Q 041065           75 SFPHLAYLDLTWNGFFG--TIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLS--HLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus        75 ~l~~L~~L~ls~n~l~g--~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~--~L~~L~l~~N~l~g~iP~  143 (148)
                      .++.|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|.+.+.+|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            46788899999998887  4556677888899999999988854  3344444  888999999988877663

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.80  E-value=7.8e-10  Score=83.39  Aligned_cols=90  Identities=16%  Similarity=0.202  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCCccceec----CCCCCCCC-CCcEEEcccCccccCCCccccCC-----CCCceeecCCCcccccCCccc
Q 041065           52 GRVINISLPNRGVNGTLH----DFSFSSFP-HLAYLDLTWNGFFGTIPPQISNL-----SNLRYIYLGSNQFFGNIPAEV  121 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p----~~~~~~l~-~L~~L~ls~n~l~g~~p~~~~~l-----~~L~~L~ls~n~l~g~~p~~~  121 (148)
                      .+++.|++++|.+++..+    . .+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            459999999999986544    3 567788 89999999999998777777664     899999999999997766644


Q ss_pred             ----cCC-CCCcEEEccCccccccCC
Q 041065          122 ----GLL-SHLEVLHIQLNRLDGSWR  142 (148)
Q Consensus       122 ----~~l-~~L~~L~l~~N~l~g~iP  142 (148)
                          ..+ ++|++|++++|++++..+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHH
Confidence                444 899999999999985443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.68  E-value=1.3e-09  Score=84.04  Aligned_cols=87  Identities=14%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             CeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccccCCCccccC-----CCCCceeecCCCcccc----cCCc
Q 041065           53 RVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISN-----LSNLRYIYLGSNQFFG----NIPA  119 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~-----l~~L~~L~ls~n~l~g----~~p~  119 (148)
                      +++.|++++|.+++.    ++. .+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|.
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            455555555555432    232 3445677778888888776544443332     5678888888888875    6677


Q ss_pred             cccCCCCCcEEEccCcccccc
Q 041065          120 EVGLLSHLEVLHIQLNRLDGS  140 (148)
Q Consensus       120 ~~~~l~~L~~L~l~~N~l~g~  140 (148)
                      .+..+++|++|++++|++++.
T Consensus       393 ~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHhCCCccEEECCCCCCCHH
Confidence            777778888888888877643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.66  E-value=1.2e-08  Score=74.49  Aligned_cols=77  Identities=16%  Similarity=0.270  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCCCccc--eecCCCCCCCCCCcEEEcccCccccCCCccccCCC--CCceeecCCCcccccCCc-------c
Q 041065           52 GRVINISLPNRGVNG--TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLS--NLRYIYLGSNQFFGNIPA-------E  120 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~--~L~~L~ls~n~l~g~~p~-------~  120 (148)
                      .+++.|+|++|.+++  .++. .+..+++|+.|+|++|.+++.  ..+..+.  +|++|+|++|.+++.+|.       .
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            579999999999987  4454 566899999999999999865  3344444  999999999999987773       3


Q ss_pred             ccCCCCCcEEE
Q 041065          121 VGLLSHLEVLH  131 (148)
Q Consensus       121 ~~~l~~L~~L~  131 (148)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            67789999886

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.58  E-value=1.1e-07  Score=71.28  Aligned_cols=65  Identities=22%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcE-EEcccCccccCCCccccCCCCCceeecCCCcccc
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAY-LDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG  115 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~-L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g  115 (148)
                      ..+++.|+|++|.+.+.++...|.++++++. +.+..|+++...|..|..+++|++|++++|++++
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence            3579999999999877777656778888765 5666788886667778888889999888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.52  E-value=1.3e-08  Score=78.51  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CeEEEEcCCCCccc----eecCCCCCCCCCCcEEEcccCccccCCCcccc-----CCCCCceeecCCCccccc----CCc
Q 041065           53 RVINISLPNRGVNG----TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQIS-----NLSNLRYIYLGSNQFFGN----IPA  119 (148)
Q Consensus        53 ~l~~L~l~~n~l~~----~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~-----~l~~L~~L~ls~n~l~g~----~p~  119 (148)
                      ++++|++++|.++.    .++. .+..+++|++|++++|.+++..+..+.     ..++|++|++++|++++.    ++.
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            47777777777663    3454 566777777777777776543332221     234567777777666642    244


Q ss_pred             cccCCCCCcEEEccCccccc
Q 041065          120 EVGLLSHLEVLHIQLNRLDG  139 (148)
Q Consensus       120 ~~~~l~~L~~L~l~~N~l~g  139 (148)
                      .+..+++|++|++++|.++.
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHH
T ss_pred             HHhhCCCCCEEECcCCCcch
Confidence            45555666777776666553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=7.3e-07  Score=66.23  Aligned_cols=88  Identities=14%  Similarity=0.113  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCc-eeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLR-YIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~-~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      ..++.+++++|.++ .++...|.++.+|+.+++..| +...-+..|.++++|+ .+++.+ .++..-+..|.++++|+.+
T Consensus       226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            47999999999887 566558999999999999998 6644456689999999 999998 6764445789999999999


Q ss_pred             EccCccccccCCC
Q 041065          131 HIQLNRLDGSWRM  143 (148)
Q Consensus       131 ~l~~N~l~g~iP~  143 (148)
                      ++++|+++ .|++
T Consensus       303 ~l~~n~i~-~I~~  314 (329)
T 3sb4_A          303 LATGDKIT-TLGD  314 (329)
T ss_dssp             EECSSCCC-EECT
T ss_pred             EeCCCccC-ccch
Confidence            99999988 6665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.42  E-value=2.5e-08  Score=75.80  Aligned_cols=64  Identities=19%  Similarity=0.225  Sum_probs=29.8

Q ss_pred             CCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCcccc----cCCccccCCCCCcEEEccCcccc
Q 041065           75 SFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFG----NIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        75 ~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g----~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      ..++|++|+|++|.++..    ++..+...++|++|+|++|.++.    .+...+...++|++|+|++|.|+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            344555555555555421    12333444455555555555542    12222333455555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.32  E-value=1.4e-07  Score=71.78  Aligned_cols=63  Identities=13%  Similarity=0.128  Sum_probs=39.8

Q ss_pred             CCCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc----CCccccCCCCCcEEEccCcccc
Q 041065           76 FPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        76 l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      .+.|++|+|++|.++..    ++..+...++|++|+|++|.+++.    ++..+...++|+.|+|++|.++
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            45677777777776532    333345667777777777777532    2444556667777777777765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.15  E-value=1.3e-07  Score=74.96  Aligned_cols=66  Identities=21%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             CCCCCcEEEcccCccccC-CCccccCCCCCceeecCCCccccc-CCccccCCCCCcEEEccCcccccc
Q 041065           75 SFPHLAYLDLTWNGFFGT-IPPQISNLSNLRYIYLGSNQFFGN-IPAEVGLLSHLEVLHIQLNRLDGS  140 (148)
Q Consensus        75 ~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~l~~N~l~g~  140 (148)
                      .+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            367788888888888753 344556788889999998888754 344456788899999998887754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.13  E-value=4.7e-07  Score=62.24  Aligned_cols=86  Identities=15%  Similarity=0.116  Sum_probs=48.6

Q ss_pred             CCeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeec--CCCccccc----C
Q 041065           52 GRVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYL--GSNQFFGN----I  117 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l--s~n~l~g~----~  117 (148)
                      ..+++|+|++|.+...    +.. .+...+.|++|+|++|.+...    +...+...++|++|+|  ++|.+...    +
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            3566677777766421    111 233445677777777766532    3344555566777777  66766532    2


Q ss_pred             CccccCCCCCcEEEccCcccc
Q 041065          118 PAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       118 p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      ...+...++|+.|+|++|.+.
T Consensus       144 ~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCcCEEeccCCCCC
Confidence            233444466777777777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.04  E-value=4.8e-07  Score=62.16  Aligned_cols=88  Identities=13%  Similarity=0.108  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCCC-Cccce----ecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc----C
Q 041065           51 AGRVINISLPNR-GVNGT----LHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN----I  117 (148)
Q Consensus        51 ~~~l~~L~l~~n-~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~  117 (148)
                      ...+++|+|++| .+...    +.. .+...++|++|+|++|.+...    +...+...++|++|+|++|.++..    +
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            467999999999 87632    222 456678999999999999643    334455668899999999999753    4


Q ss_pred             CccccCCCCCcEEEc--cCccccc
Q 041065          118 PAEVGLLSHLEVLHI--QLNRLDG  139 (148)
Q Consensus       118 p~~~~~l~~L~~L~l--~~N~l~g  139 (148)
                      ...+...++|++|+|  ++|.+..
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCH
Confidence            556777789999999  8898863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.03  E-value=1.3e-06  Score=59.83  Aligned_cols=84  Identities=10%  Similarity=0.002  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCc-cccCCCccccCC----CCCceeecCCCc-ccccCCccccCCC
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNG-FFGTIPPQISNL----SNLRYIYLGSNQ-FFGNIPAEVGLLS  125 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~-l~g~~p~~~~~l----~~L~~L~ls~n~-l~g~~p~~~~~l~  125 (148)
                      -.+++|+++++.++..--. .+..+++|+.|+|+++. ++..--..+..+    ++|++|+|++|. ++..--..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            4699999999998743222 57889999999999995 665433445554    479999999984 7643334577899


Q ss_pred             CCcEEEccCcc
Q 041065          126 HLEVLHIQLNR  136 (148)
Q Consensus       126 ~L~~L~l~~N~  136 (148)
                      +|+.|++++..
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.97  E-value=8.9e-07  Score=70.16  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=14.5

Q ss_pred             CCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           99 NLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        99 ~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      ++++|++|++++|.+.+ +|..+..+++|+.|+++
T Consensus       218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred             hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence            34444444444444442 33333444444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.90  E-value=6e-07  Score=71.12  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=39.8

Q ss_pred             CCCCcEEEcccCccccCCCccc-cCCCCCceeecCCCcccccCCc-cccCCCCCcEEEccCcccc
Q 041065           76 FPHLAYLDLTWNGFFGTIPPQI-SNLSNLRYIYLGSNQFFGNIPA-EVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        76 l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~l~~N~l~  138 (148)
                      +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... .+..+++|+.|++++|+++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            5667777777777655444333 4567777777777777543332 3344677777777777664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.78  E-value=3.5e-06  Score=66.67  Aligned_cols=84  Identities=18%  Similarity=0.124  Sum_probs=43.7

Q ss_pred             CCeEEEEcCCCCccceecCCCCC-CCCCCcEEEcccC-ccccC-CCccccCCCCCceeecCCCcccccCCcccc----CC
Q 041065           52 GRVINISLPNRGVNGTLHDFSFS-SFPHLAYLDLTWN-GFFGT-IPPQISNLSNLRYIYLGSNQFFGNIPAEVG----LL  124 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~-~l~~L~~L~ls~n-~l~g~-~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~----~l  124 (148)
                      .++++|+++++.+++..+. .+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+.    .+
T Consensus       105 ~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            3566777777666544332 332 4566666666666 33322 222333566666666666665543332222    34


Q ss_pred             CCCcEEEccCcc
Q 041065          125 SHLEVLHIQLNR  136 (148)
Q Consensus       125 ~~L~~L~l~~N~  136 (148)
                      ++|+.|++++|.
T Consensus       184 ~~L~~L~l~~~~  195 (594)
T 2p1m_B          184 TSLVSLNISCLA  195 (594)
T ss_dssp             CCCCEEECTTCC
T ss_pred             CcCcEEEecccC
Confidence            456666665553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.77  E-value=6.5e-05  Score=48.72  Aligned_cols=56  Identities=27%  Similarity=0.305  Sum_probs=38.8

Q ss_pred             EEEcCCCCcc-ceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCccc
Q 041065           56 NISLPNRGVN-GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFF  114 (148)
Q Consensus        56 ~L~l~~n~l~-~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~  114 (148)
                      .++.++++++ ..+|. .+  -++|++|+|++|.|+..-+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~-~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC-CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4566777765 24553 21  236888999999988444455778888899999888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=0.00012  Score=54.07  Aligned_cols=78  Identities=19%  Similarity=0.174  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCc-EEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLA-YLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~-~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.|+++.| +. .++...|.++++|+ .+++.. .++..-+..|.++++|+.++++.|+++..-+..|.++++|+.+
T Consensus       250 ~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          250 KYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             TTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             CCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            47899999998 55 46655899999999 999998 6764455779999999999999999985545689999999988


Q ss_pred             Ec
Q 041065          131 HI  132 (148)
Q Consensus       131 ~l  132 (148)
                      +.
T Consensus       327 y~  328 (329)
T 3sb4_A          327 YK  328 (329)
T ss_dssp             EC
T ss_pred             cc
Confidence            63

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.39  E-value=2.2e-05  Score=59.43  Aligned_cols=63  Identities=17%  Similarity=0.311  Sum_probs=28.9

Q ss_pred             CCCCcEEEcccCccccCCCccc---cCCCCCceeecCCCccccc----CCccccCCCCCcEEEccCcccc
Q 041065           76 FPHLAYLDLTWNGFFGTIPPQI---SNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        76 l~~L~~L~ls~n~l~g~~p~~~---~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      +++|++|+|.+|.+....+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4455555555554442222111   1345555555555555432    2222334455555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.24  E-value=0.00077  Score=43.55  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=16.1

Q ss_pred             CCceeecCCCcccccCCccccCCCCCcEEEccCcc
Q 041065          102 NLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNR  136 (148)
Q Consensus       102 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~  136 (148)
                      +|++|+|++|+|+..-+..|..+++|+.|+|++|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            34555555555552212234444555555555553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.98  E-value=0.0036  Score=47.84  Aligned_cols=83  Identities=7%  Similarity=0.083  Sum_probs=44.3

Q ss_pred             CeEEEEcCCCCcc----ceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCc
Q 041065           53 RVINISLPNRGVN----GTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLE  128 (148)
Q Consensus        53 ~l~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~  128 (148)
                      .++.+.+.++.+.    ..++...|.++++|+.+++. +.+.-.-...|.++++|+.+.+..| ++..-...|.++ +|+
T Consensus       272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~  348 (401)
T 4fdw_A          272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK  348 (401)
T ss_dssp             TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred             CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence            3455555444332    12333355566666666665 2344222344666677777777544 442223456666 777


Q ss_pred             EEEccCcccc
Q 041065          129 VLHIQLNRLD  138 (148)
Q Consensus       129 ~L~l~~N~l~  138 (148)
                      .+++.+|.+.
T Consensus       349 ~l~l~~n~~~  358 (401)
T 4fdw_A          349 EVKVEGTTPP  358 (401)
T ss_dssp             EEEECCSSCC
T ss_pred             EEEEcCCCCc
Confidence            7777777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.90  E-value=0.00018  Score=54.42  Aligned_cols=41  Identities=17%  Similarity=0.273  Sum_probs=25.9

Q ss_pred             CCCCCceeecCCCcccccCCccc---cCCCCCcEEEccCccccc
Q 041065           99 NLSNLRYIYLGSNQFFGNIPAEV---GLLSHLEVLHIQLNRLDG  139 (148)
Q Consensus        99 ~l~~L~~L~ls~n~l~g~~p~~~---~~l~~L~~L~l~~N~l~g  139 (148)
                      .+++|++|+|.+|.+.+..+..+   ..+++|++|+|+.|.+.+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            35677777777777654332222   245677888887777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.80  E-value=0.00057  Score=46.63  Aligned_cols=62  Identities=11%  Similarity=0.025  Sum_probs=47.5

Q ss_pred             CCCcEEEcccCccccCCCccccCCCCCceeecCCCc-ccccCCccccCC----CCCcEEEccCcc-cc
Q 041065           77 PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQ-FFGNIPAEVGLL----SHLEVLHIQLNR-LD  138 (148)
Q Consensus        77 ~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~-l~g~~p~~~~~l----~~L~~L~l~~N~-l~  138 (148)
                      ..|+.||++++.++..--..+..+++|++|+|+++. ++..--..+..+    ++|++|+|+++. ++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            469999999999876555567899999999999985 664333345554    379999999874 54

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.44  E-value=0.009  Score=45.60  Aligned_cols=79  Identities=18%  Similarity=0.154  Sum_probs=44.4

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.+.+.. .+. .++...|.++++|+.++++.|.++ .++.......+|+.+.+..+ +...-...|.++++|+.+++
T Consensus       158 ~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            355566654 333 233336777777777777777766 34433223566666666643 44222335666666666666


Q ss_pred             cCc
Q 041065          133 QLN  135 (148)
Q Consensus       133 ~~N  135 (148)
                      ..|
T Consensus       234 ~~~  236 (401)
T 4fdw_A          234 PEN  236 (401)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.16  E-value=0.0012  Score=45.79  Aligned_cols=60  Identities=12%  Similarity=0.071  Sum_probs=27.2

Q ss_pred             CCCCCcEEEcccCccccCC----CccccCCCCCceeecCCCccccc----CCccccCCCCCcEEEccC
Q 041065           75 SFPHLAYLDLTWNGFFGTI----PPQISNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQL  134 (148)
Q Consensus        75 ~l~~L~~L~ls~n~l~g~~----p~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~  134 (148)
                      .=+.|+.|+|++|.+...-    -..+..=+.|++|+|++|.+...    +-..+..-+.|+.|+|++
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            3345566666666554221    11122234566666666655421    111233334455665553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.16  E-value=0.0081  Score=41.62  Aligned_cols=66  Identities=12%  Similarity=0.077  Sum_probs=47.3

Q ss_pred             CCCCCCCcEEEcccC-ccccC----CCccccCCCCCceeecCCCccccc----CCccccCCCCCcEEEccCcccc
Q 041065           73 FSSFPHLAYLDLTWN-GFFGT----IPPQISNLSNLRYIYLGSNQFFGN----IPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        73 ~~~l~~L~~L~ls~n-~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      +..-+.|+.|+|++| .+...    +-+.+..=+.|+.|+|++|.+...    +-..+..-+.|++|+|+.|.|.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            344567888999885 66422    334455568899999999999732    2233445578999999999987

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.13  E-value=0.066  Score=40.31  Aligned_cols=79  Identities=13%  Similarity=0.088  Sum_probs=52.4

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.+.+..+ +. .++...|.++.+|+.+++..+ ++-.-...|.++++|+.+.+..+ ++..-...|.++.+|+.+++
T Consensus       298 ~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          298 SLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             cccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            4555555543 33 344446778888888888644 54223456788889999988776 55233457888889998888


Q ss_pred             cCc
Q 041065          133 QLN  135 (148)
Q Consensus       133 ~~N  135 (148)
                      ..+
T Consensus       374 p~~  376 (394)
T 4fs7_A          374 PKR  376 (394)
T ss_dssp             EGG
T ss_pred             CCC
Confidence            654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.13  E-value=0.12  Score=38.87  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=44.1

Q ss_pred             ecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC-ccccCCCCCcEEEccCcc
Q 041065           68 LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP-AEVGLLSHLEVLHIQLNR  136 (148)
Q Consensus        68 ~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~l~~N~  136 (148)
                      ++...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++ .|. ..|.++++|+.+++.++.
T Consensus       302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred             cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence            44446777778888887654 43222345777888888888654 54 343 467888888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.17  E-value=0.12  Score=38.43  Aligned_cols=61  Identities=11%  Similarity=0.029  Sum_probs=38.0

Q ss_pred             CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC-ccccCCCCCcEEEccC
Q 041065           72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP-AEVGLLSHLEVLHIQL  134 (148)
Q Consensus        72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~l~~  134 (148)
                      .|.++.+|+.+.+..+.++..-...|.++.+|+.+.+..+ ++ .|. ..|.++++|+.+.+..
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence            5666777777777776665333345677777777777654 44 233 3566667777666643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.81  E-value=0.24  Score=37.23  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=49.5

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.+.+..+ ++ .+....|.++.+|+.+.+..+ ++-.-...|.++++|+.+++.++....   ..+....+|+.+.+
T Consensus       312 ~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          312 SLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV  385 (394)
T ss_dssp             TCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred             CcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence            5677777654 43 344447899999999999754 552234568999999999999886542   34667788998888


Q ss_pred             cCcccc
Q 041065          133 QLNRLD  138 (148)
Q Consensus       133 ~~N~l~  138 (148)
                      ..|.+.
T Consensus       386 ~~~~~~  391 (394)
T 4gt6_A          386 APGSID  391 (394)
T ss_dssp             ------
T ss_pred             CCCCEE
Confidence            766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.65  E-value=0.5  Score=35.05  Aligned_cols=80  Identities=15%  Similarity=0.110  Sum_probs=51.5

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .++.+.+..+ ++ .+....+.++..|+.+.+..+ +...-...|..+++|+.+.+.++.++..-...|.++.+|+.+.+
T Consensus       241 ~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          241 ALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            3445555443 22 233335667777887777544 33222345778899999999988887333457888899999998


Q ss_pred             cCc
Q 041065          133 QLN  135 (148)
Q Consensus       133 ~~N  135 (148)
                      ..+
T Consensus       318 p~~  320 (379)
T 4h09_A          318 PTA  320 (379)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=90.61  E-value=0.76  Score=34.39  Aligned_cols=62  Identities=13%  Similarity=-0.054  Sum_probs=42.4

Q ss_pred             CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCc
Q 041065           72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLN  135 (148)
Q Consensus        72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N  135 (148)
                      .+..+.+|+.+.+..+ +...-...|.++++|+.+++..+ ++..-...|.++++|+.+.+..|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            4566777777777654 43222345778889999998754 55222456888899999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 2e-07
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 69  HDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLE 128
                    +L  LDL  N  +GT+P  ++ L  L  + +  N   G IP + G L   +
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFD 294

Query: 129 VLHIQLNRL 137
           V     N+ 
Sbjct: 295 VSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 4e-04
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP 118
             +    L  L++++N   G IP Q  NL         +N+     P
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 25/139 (17%)

Query: 11  EEADALLKWKASLKNHNRSLLSSCINDATNVSSKTSPCNDAGRVINISLPNRGVNGTLHD 70
           ++  ALL+ K  L N     LSS +         T  CN     +               
Sbjct: 6   QDKQALLQIKKDLGNPTT--LSSWLPT-------TDCCNRTWLGVLCD------------ 44

Query: 71  FSFSSFPHLAYLDLTWNGFFG--TIPPQISNLSNLRYIYLGSNQFF-GNIPAEVGLLSHL 127
            + +    +  LDL+         IP  ++NL  L ++Y+G      G IP  +  L+ L
Sbjct: 45  -TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 128 EVLHIQLNRLDGSWRMCTC 146
             L+I    + G+      
Sbjct: 104 HYLYITHTNVSGAIPDFLS 122

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 72  SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH 131
             SS   L  L    N    +    ++NL+N+ ++  G NQ     P  +  L+ +  L 
Sbjct: 324 PVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 379

Query: 132 IQLN 135
           +   
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 56  NISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFG 115
            ++      N        S+  +L YL L +N      P  +S+L+ L+ ++  +N+   
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 116 NIPAEVGLLSHLEVLHIQLNRLDG 139
              + +  L+++  L    N++  
Sbjct: 344 --VSSLANLTNINWLSAGHNQISD 365

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 4e-05
 Identities = 19/61 (31%), Positives = 25/61 (40%)

Query: 77  PHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNR 136
           P  A LDL  N           NL NL  + L +N+     P     L  LE L++  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 137 L 137
           L
Sbjct: 91  L 91

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 17/78 (21%), Positives = 26/78 (33%)

Query: 67  TLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSH 126
            + D  F +  +L  L L  N      P   + L  L  +YL  NQ           L  
Sbjct: 45  EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 104

Query: 127 LEVLHIQLNRLDGSWRMC 144
           L V   ++ ++  S    
Sbjct: 105 LRVHENEITKVRKSVFNG 122

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.004
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 68  LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQF 113
           L     +   +L  L L  N  + TIP        L + +L  N +
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.28
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.27
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.27
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.23
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.21
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.07
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.84
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.73
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.67
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.62
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.04
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.92
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.82
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.67
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.35
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.39

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=2.3e-27  Score=174.65  Aligned_cols=137  Identities=26%  Similarity=0.411  Sum_probs=116.5

Q ss_pred             CCCHHHHHHHHHHHHhccCCCCCCcCCCcCCCCCcc--ccceeeCCC---CCeEEEEcCCCCccc--eecCCCCCCCCCC
Q 041065            7 SESNEEADALLKWKASLKNHNRSLLSSCINDATNVS--SKTSPCNDA---GRVINISLPNRGVNG--TLHDFSFSSFPHL   79 (148)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~c~--~~gv~c~~~---~~l~~L~l~~n~l~~--~~p~~~~~~l~~L   79 (148)
                      -|.++|++||++||+.+.++.  .+++|..++|||.  |.||+|+..   .+|++|+|+++++.|  .+|. .+.++++|
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~--~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~-~l~~L~~L   78 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC--cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh-HHhcCccc
Confidence            478999999999999998753  3789988889994  999999854   379999999999987  4676 89999999


Q ss_pred             cEEEccc-CccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065           80 AYLDLTW-NGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus        80 ~~L~ls~-n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      ++|+|++ |+++|.+|+.|+++++|++|+|++|++.+..|..+..+.+|++++++.|.+.+.+|..++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            9999997 899999999999999999999999998887777777777777777777777766666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=5.1e-16  Score=106.42  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=86.1

Q ss_pred             ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065           41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS  110 (148)
Q Consensus        41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~  110 (148)
                      |.+..|.|...          ..++.|+|++|.++..++...|..+++|+.|++++|.+....+..+..+++|++|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45666777532          36889999999998766554778899999999999999988888899999999999999


Q ss_pred             CcccccCCccccCCCCCcEEEccCccccccCCCCC
Q 041065          111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCT  145 (148)
Q Consensus       111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~  145 (148)
                      |++++..|..|.++++|++|+|++|+|++..|..+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHh
Confidence            99997667788999999999999999995444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.50  E-value=6.8e-15  Score=107.22  Aligned_cols=95  Identities=19%  Similarity=0.310  Sum_probs=88.2

Q ss_pred             CCeEEEEcCC-CCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPN-RGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~-n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++.|+|++ |.+.|.+|. .+.++++|++|++++|++.+..+..+..+..|+++++++|.+.+.+|..+..++.|+++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~-~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             cccccccccccccccccccc-ccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            4789999987 889999997 89999999999999999999889889999999999999999999999999999999999


Q ss_pred             EccCccccccCCCCCcC
Q 041065          131 HIQLNRLDGSWRMCTCT  147 (148)
Q Consensus       131 ~l~~N~l~g~iP~~~~~  147 (148)
                      ++++|.++|.+|+.++.
T Consensus       155 ~l~~n~l~~~ip~~~~~  171 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             ECCSSCCEEECCGGGGC
T ss_pred             ecccccccccccccccc
Confidence            99999999999986653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.1e-13  Score=88.53  Aligned_cols=82  Identities=20%  Similarity=0.229  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEV  129 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~  129 (148)
                      .++++|++++|.++ .+|. .+..+++|+.|++++|.++. +| .+..+++|+++++++|+++. +|  ..+..+++|++
T Consensus        20 ~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          20 LLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVL   94 (124)
T ss_dssp             TTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCE
T ss_pred             CCCCEEECCCCccC-cchh-hhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCC-CCCchhhcCCCCCCE
Confidence            57899999999997 5675 78999999999999999984 44 58999999999999999984 44  46888999999


Q ss_pred             EEccCcccc
Q 041065          130 LHIQLNRLD  138 (148)
Q Consensus       130 L~l~~N~l~  138 (148)
                      |++++|+++
T Consensus        95 L~l~~N~i~  103 (124)
T d1dcea3          95 LNLQGNSLC  103 (124)
T ss_dssp             EECTTSGGG
T ss_pred             EECCCCcCC
Confidence            999999987

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=1.3e-13  Score=94.20  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           51 AGRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        51 ~~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      ..+++.|++++|.+....+. .+..+++|++|++++|+++...|..|.++++|++|+|++|++++..|..|..+++|++|
T Consensus        53 l~~L~~L~L~~N~i~~~~~~-~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          53 LPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             CceEeeeecccccccccccc-ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccc
Confidence            35799999999999977775 89999999999999999997777789999999999999999997777789999999999


Q ss_pred             EccCcccccc
Q 041065          131 HIQLNRLDGS  140 (148)
Q Consensus       131 ~l~~N~l~g~  140 (148)
                      +|++|.+...
T Consensus       132 ~L~~N~~~~~  141 (192)
T d1w8aa_         132 NLASNPFNCN  141 (192)
T ss_dssp             ECTTCCBCCS
T ss_pred             cccccccccc
Confidence            9999988743

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.8e-13  Score=87.69  Aligned_cols=85  Identities=15%  Similarity=0.115  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCCC-ccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEE
Q 041065           52 GRVINISLPNRG-VNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        52 ~~l~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .++++|++.++. ++. ++...|.++++|+.|++++|+++...|..|..+++|++|+|++|+++ .+|.......+|+.|
T Consensus        31 ~~l~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          31 ENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQEL  108 (156)
T ss_dssp             SCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEE
T ss_pred             cccCeeecCCCccccc-cCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcccccccc
Confidence            368899998765 664 44337999999999999999999766778999999999999999999 677665555689999


Q ss_pred             EccCcccc
Q 041065          131 HIQLNRLD  138 (148)
Q Consensus       131 ~l~~N~l~  138 (148)
                      +|++|.|.
T Consensus       109 ~L~~Np~~  116 (156)
T d2ifga3         109 VLSGNPLH  116 (156)
T ss_dssp             ECCSSCCC
T ss_pred             ccCCCccc
Confidence            99999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=7.1e-13  Score=84.71  Aligned_cols=81  Identities=23%  Similarity=0.333  Sum_probs=71.5

Q ss_pred             EEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccC
Q 041065           55 INISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQL  134 (148)
Q Consensus        55 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~  134 (148)
                      +.|++++|+++ .++  .+..++.|++|++++|.++ .+|+.+..+++|+.|++++|.++ .+| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            36899999998 455  5889999999999999998 68888999999999999999999 566 489999999999999


Q ss_pred             ccccccCC
Q 041065          135 NRLDGSWR  142 (148)
Q Consensus       135 N~l~g~iP  142 (148)
                      |+++ .+|
T Consensus        75 N~i~-~~~   81 (124)
T d1dcea3          75 NRLQ-QSA   81 (124)
T ss_dssp             SCCC-SSS
T ss_pred             CccC-CCC
Confidence            9998 444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.5e-12  Score=85.70  Aligned_cols=86  Identities=17%  Similarity=0.183  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC--ccccCCCCCcE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP--AEVGLLSHLEV  129 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~  129 (148)
                      .+++.|++++|.++ .++  .+..+++|++|++++|.++...+..+..+++|++|++++|+++ .++  ..+..+++|++
T Consensus        41 ~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          41 DQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY  116 (162)
T ss_dssp             TCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             ccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccch
Confidence            56888888888887 454  4778888888888888887443444567888888888888887 344  35777888888


Q ss_pred             EEccCccccccCC
Q 041065          130 LHIQLNRLDGSWR  142 (148)
Q Consensus       130 L~l~~N~l~g~iP  142 (148)
                      |++++|.++ .+|
T Consensus       117 L~l~~N~i~-~~~  128 (162)
T d1a9na_         117 LCILRNPVT-NKK  128 (162)
T ss_dssp             EECCSSGGG-GST
T ss_pred             hhcCCCccc-ccc
Confidence            888888876 444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.7e-12  Score=90.84  Aligned_cols=84  Identities=20%  Similarity=0.196  Sum_probs=39.2

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      ++.+++++|.++...+. .|..+++|+.|++++|.+++..+..|..+++|+++++++|++++..|..|..+++|++|+++
T Consensus       131 L~~l~l~~N~l~~i~~~-~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         131 LQYLYLQDNALQALPDD-TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cchhhhccccccccChh-HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccc
Confidence            44455555554432222 34444444555555554443333444444445555555444444444444444444444444


Q ss_pred             Ccccc
Q 041065          134 LNRLD  138 (148)
Q Consensus       134 ~N~l~  138 (148)
                      +|++.
T Consensus       210 ~N~i~  214 (284)
T d1ozna_         210 ANNLS  214 (284)
T ss_dssp             SSCCS
T ss_pred             ccccc
Confidence            44444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.27  E-value=7.1e-12  Score=90.54  Aligned_cols=89  Identities=17%  Similarity=0.264  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|......+. .+..++.+++|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+
T Consensus       171 ~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  248 (305)
T ss_dssp             TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             CccCEEECCCCcCCCCChh-Hhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence            3466666666666655554 5666666777777777666555556666667777777777666 5666666667777777


Q ss_pred             ccCccccccCCC
Q 041065          132 IQLNRLDGSWRM  143 (148)
Q Consensus       132 l~~N~l~g~iP~  143 (148)
                      |++|+++ .|+.
T Consensus       249 Ls~N~i~-~i~~  259 (305)
T d1xkua_         249 LHNNNIS-AIGS  259 (305)
T ss_dssp             CCSSCCC-CCCT
T ss_pred             CCCCccC-ccCh
Confidence            7777666 4543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.6e-12  Score=91.47  Aligned_cols=87  Identities=20%  Similarity=0.215  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+....+. .+.++++|+++++++|++++..|..|..+++|++|++++|++.+..|..|+.+++|++|+
T Consensus       153 ~~L~~L~l~~N~l~~l~~~-~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (284)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             cchhhcccccCcccccchh-hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEE
Confidence            4577888888887754444 677888888888888888877777788888888888888888866666777888888888


Q ss_pred             ccCccccc
Q 041065          132 IQLNRLDG  139 (148)
Q Consensus       132 l~~N~l~g  139 (148)
                      +++|++.+
T Consensus       232 l~~N~l~C  239 (284)
T d1ozna_         232 LNDNPWVC  239 (284)
T ss_dssp             CCSSCEEC
T ss_pred             ecCCCCCC
Confidence            88887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2e-11  Score=86.91  Aligned_cols=70  Identities=20%  Similarity=0.116  Sum_probs=35.4

Q ss_pred             CCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCCCc
Q 041065           76 FPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMCTC  146 (148)
Q Consensus        76 l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~  146 (148)
                      +.++++|++++|.+....+..+..+++|+.+++++|++++..+..|..+++|++|+|++|+|+ .||+.+.
T Consensus       123 l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~  192 (266)
T d1p9ag_         123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (266)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHC
Confidence            333334444444443222333444555666666666665444445555666666666666665 5555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.8e-11  Score=80.94  Aligned_cols=87  Identities=15%  Similarity=0.127  Sum_probs=70.5

Q ss_pred             EEcCCCCccceecCCCCCCCCCCcEEEcccCc-cccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCc
Q 041065           57 ISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNG-FFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLN  135 (148)
Q Consensus        57 L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~-l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N  135 (148)
                      ++.+++++. .+|. .+..+++|++|++++|+ ++...+..|.++++|+.|+|++|+++..-|..|..+++|++|+|++|
T Consensus        13 l~c~~~~~~-~~p~-~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          13 LRCTRDGAL-DSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             EECCSSCCC-TTTT-TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEecCCCCc-cCcc-cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            444555554 3454 68889999999998764 77555567999999999999999999666778999999999999999


Q ss_pred             cccccCCCCCc
Q 041065          136 RLDGSWRMCTC  146 (148)
Q Consensus       136 ~l~g~iP~~~~  146 (148)
                      +++ .+|..+.
T Consensus        91 ~l~-~l~~~~~  100 (156)
T d2ifga3          91 ALE-SLSWKTV  100 (156)
T ss_dssp             CCS-CCCSTTT
T ss_pred             CCc-ccChhhh
Confidence            999 8887654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.1e-11  Score=86.73  Aligned_cols=85  Identities=19%  Similarity=0.193  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+....+. .+..++.++.+++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+
T Consensus       124 ~~l~~L~l~~n~l~~l~~~-~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         124 GELQELYLKGNELKTLPPG-LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred             cccccccccccccceeccc-cccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEE
Confidence            4678888888888754443 7788999999999999999777778999999999999999999 8999999999999999


Q ss_pred             ccCcccc
Q 041065          132 IQLNRLD  138 (148)
Q Consensus       132 l~~N~l~  138 (148)
                      |++|.+.
T Consensus       202 L~~Np~~  208 (266)
T d1p9ag_         202 LHGNPWL  208 (266)
T ss_dssp             CCSCCBC
T ss_pred             ecCCCCC
Confidence            9999865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.5e-11  Score=81.81  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=69.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      ..+++|+|++|+++. ++. .+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|++|+
T Consensus        18 ~~lr~L~L~~n~I~~-i~~-~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCCCCc-cCc-cccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            468999999999984 564 5678999999999999998 453 588999999999999999954444567799999999


Q ss_pred             ccCcccc
Q 041065          132 IQLNRLD  138 (148)
Q Consensus       132 l~~N~l~  138 (148)
                      +++|+++
T Consensus        94 L~~N~i~  100 (162)
T d1a9na_          94 LTNNSLV  100 (162)
T ss_dssp             CCSCCCC
T ss_pred             ecccccc
Confidence            9999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=4.1e-10  Score=81.03  Aligned_cols=95  Identities=22%  Similarity=0.339  Sum_probs=73.5

Q ss_pred             ccccceeeCCC----------CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCC
Q 041065           41 VSSKTSPCNDA----------GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGS  110 (148)
Q Consensus        41 c~~~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~  110 (148)
                      |.|.++.|...          ..++.|++++|.++. ++...|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCC-cChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            56788888632          357889999998874 4433688889999999999998866677788899999999999


Q ss_pred             CcccccCCccccCCCCCcEEEccCccccc
Q 041065          111 NQFFGNIPAEVGLLSHLEVLHIQLNRLDG  139 (148)
Q Consensus       111 n~l~g~~p~~~~~l~~L~~L~l~~N~l~g  139 (148)
                      |+++ .+|..+  ...++.|++..|.+.+
T Consensus        89 n~l~-~l~~~~--~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          89 NQLK-ELPEKM--PKTLQELRVHENEITK  114 (305)
T ss_dssp             SCCS-BCCSSC--CTTCCEEECCSSCCCB
T ss_pred             CccC-cCccch--hhhhhhhhccccchhh
Confidence            9988 577643  3578888888887773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=4.9e-10  Score=82.34  Aligned_cols=79  Identities=19%  Similarity=0.413  Sum_probs=40.2

Q ss_pred             eEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEcc
Q 041065           54 VINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQ  133 (148)
Q Consensus        54 l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~  133 (148)
                      ++.+.+..|.+.+ ++  .+..+++++.|++++|++++..  .+..+++|++|++++|+++ .++ .+..+++|++|+++
T Consensus       287 l~~l~~~~n~l~~-~~--~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         287 LTNLELNENQLED-IS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAG  359 (384)
T ss_dssp             CSEEECCSSCCSC-CG--GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECC
T ss_pred             ccccccccccccc-cc--ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECC
Confidence            4445555555443 11  2445555555555555555322  2455555555555555555 233 35555555555555


Q ss_pred             Cccccc
Q 041065          134 LNRLDG  139 (148)
Q Consensus       134 ~N~l~g  139 (148)
                      +|++++
T Consensus       360 ~N~l~~  365 (384)
T d2omza2         360 HNQISD  365 (384)
T ss_dssp             SSCCCB
T ss_pred             CCcCCC
Confidence            555553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.9e-09  Score=74.95  Aligned_cols=88  Identities=20%  Similarity=0.264  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCC-ccccCCCCCceeecCC-CcccccCCccccCCCCCcEE
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIP-PQISNLSNLRYIYLGS-NQFFGNIPAEVGLLSHLEVL  130 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~L  130 (148)
                      .+++|++++|.++. ++...|.++++|++|++++|.+...++ ..|..++.++++.+.. |++....+..+..+++|+++
T Consensus        30 ~l~~L~Ls~n~i~~-l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCCE-ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCCc-cChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            68999999999974 554478999999999999999876554 4578899999998864 67776677788999999999


Q ss_pred             EccCccccccCC
Q 041065          131 HIQLNRLDGSWR  142 (148)
Q Consensus       131 ~l~~N~l~g~iP  142 (148)
                      ++++|.+. .+|
T Consensus       109 ~l~~~~l~-~~~  119 (242)
T d1xwdc1         109 LISNTGIK-HLP  119 (242)
T ss_dssp             EEESCCCC-SCC
T ss_pred             ccchhhhc-ccc
Confidence            99999987 344

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.85  E-value=4.6e-09  Score=71.35  Aligned_cols=83  Identities=20%  Similarity=0.282  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+++. +  .+..+++|++|++++|.+. .++ .+..++.|+++++++|.+.. + ..+..+++|+.|+
T Consensus        62 ~nL~~L~Ls~N~l~~~-~--~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~  134 (199)
T d2omxa2          62 NNLTQINFSNNQLTDI-T--PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLE  134 (199)
T ss_dssp             TTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             CCcCcCccccccccCc-c--cccCCcccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhhhHHhh
Confidence            5788888888887753 3  3778888888888888876 333 47788888888888888763 3 3477888899999


Q ss_pred             ccCccccccCC
Q 041065          132 IQLNRLDGSWR  142 (148)
Q Consensus       132 l~~N~l~g~iP  142 (148)
                      +++|++. .+|
T Consensus       135 l~~n~l~-~~~  144 (199)
T d2omxa2         135 LSSNTIS-DIS  144 (199)
T ss_dssp             CCSSCCC-CCG
T ss_pred             hhhhhhc-ccc
Confidence            9998877 444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=3.1e-09  Score=77.93  Aligned_cols=82  Identities=20%  Similarity=0.317  Sum_probs=69.9

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .++++|++++++++. +.  .+..+++|++|++++|++++ +| .+.++++|++|++++|++++ ++. ++.+++|+.|+
T Consensus        44 ~~l~~L~l~~~~I~~-l~--gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~-i~~-l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKS-ID--GVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCC-cc--ccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccc-ccc-ccccccccccc
Confidence            568999999999874 43  57889999999999999985 44 39999999999999999985 443 88999999999


Q ss_pred             ccCcccccc
Q 041065          132 IQLNRLDGS  140 (148)
Q Consensus       132 l~~N~l~g~  140 (148)
                      +++|.+++.
T Consensus       117 ~~~~~~~~~  125 (384)
T d2omza2         117 LFNNQITDI  125 (384)
T ss_dssp             CCSSCCCCC
T ss_pred             ccccccccc
Confidence            999988753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=4.4e-09  Score=72.10  Aligned_cols=80  Identities=20%  Similarity=0.302  Sum_probs=52.6

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .++++|++++|.+++ ++  .+..+++|++|++++|++++ +| .+..+++|+.|++++|.+. .+ ..+..+++++.++
T Consensus        68 ~~L~~L~L~~n~i~~-l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~  140 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-IK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY  140 (210)
T ss_dssp             TTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEE
T ss_pred             CCCCEEeCCCccccC-cc--ccccCccccccccccccccc-cc-ccccccccccccccccccc-cc-ccccccccccccc
Confidence            457777777777664 33  35667777777777777763 33 4666777777777777765 33 3456667777777


Q ss_pred             ccCcccc
Q 041065          132 IQLNRLD  138 (148)
Q Consensus       132 l~~N~l~  138 (148)
                      +++|.++
T Consensus       141 ~~~n~l~  147 (210)
T d1h6ta2         141 LGNNKIT  147 (210)
T ss_dssp             CCSSCCC
T ss_pred             ccccccc
Confidence            7777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.78  E-value=6.5e-09  Score=71.79  Aligned_cols=82  Identities=17%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      .+..+.++.+.+....   .+..+++|+.|++++|.+....  .+.++++|+.|++++|++++ ++. +..+++|++|++
T Consensus       130 ~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~L  202 (227)
T d1h6ua2         130 NLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHL  202 (227)
T ss_dssp             TCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEEC
T ss_pred             chhhhhchhhhhchhh---hhccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEEC
Confidence            4556666666554322   3556667777777777765322  36667777777777777763 433 666777777777


Q ss_pred             cCccccccCC
Q 041065          133 QLNRLDGSWR  142 (148)
Q Consensus       133 ~~N~l~g~iP  142 (148)
                      ++|+++ .+|
T Consensus       203 s~N~lt-~i~  211 (227)
T d1h6ua2         203 KNNQIS-DVS  211 (227)
T ss_dssp             TTSCCC-BCG
T ss_pred             cCCcCC-CCc
Confidence            777776 344

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.74  E-value=2.1e-08  Score=68.03  Aligned_cols=66  Identities=26%  Similarity=0.377  Sum_probs=50.5

Q ss_pred             CCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCC
Q 041065           72 SFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWR  142 (148)
Q Consensus        72 ~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP  142 (148)
                      .+..+++|+.+++++|.+.. + +.+..+++|++|++.+|++++ ++ .++++++|++|++++|+++ .||
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~  188 (199)
T d2omxa2         123 PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS-DIS  188 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG
T ss_pred             ccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC-CCc
Confidence            35667788888888887762 3 357778888888888888874 44 3788899999999999988 454

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=1.3e-08  Score=70.14  Aligned_cols=76  Identities=20%  Similarity=0.245  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEE
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLH  131 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~  131 (148)
                      .+++.|++++|.+... +  .+..+++|+.|++++|++++ ++ .+..+++|++|++++|+++ .++. +.++++|+.|+
T Consensus       151 ~~L~~L~l~~n~~~~~-~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~  223 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDL-T--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVT  223 (227)
T ss_dssp             TTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEE
T ss_pred             cccccccccccccccc-h--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEE
Confidence            5689999999988643 2  47889999999999999985 44 4889999999999999999 4553 88999999999


Q ss_pred             ccC
Q 041065          132 IQL  134 (148)
Q Consensus       132 l~~  134 (148)
                      +++
T Consensus       224 lsn  226 (227)
T d1h6ua2         224 LTN  226 (227)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.69  E-value=8.5e-11  Score=80.48  Aligned_cols=84  Identities=26%  Similarity=0.339  Sum_probs=46.4

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCcc----------------------ccCCCCCceeecC
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQ----------------------ISNLSNLRYIYLG  109 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~----------------------~~~l~~L~~L~ls  109 (148)
                      .+++.|+|++|.++ .++  .+..+++|+.|++++|.++ .+|..                      +..+++|++|+++
T Consensus        48 ~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             TTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEES
T ss_pred             cccceeECcccCCC-Ccc--cccCCccccChhhcccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            35666666666655 233  3555666666666666554 33322                      3344556666666


Q ss_pred             CCcccccCC--ccccCCCCCcEEEccCcccccc
Q 041065          110 SNQFFGNIP--AEVGLLSHLEVLHIQLNRLDGS  140 (148)
Q Consensus       110 ~n~l~g~~p--~~~~~l~~L~~L~l~~N~l~g~  140 (148)
                      +|+++ .++  ..+..+++|+.|++++|++...
T Consensus       124 ~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         124 NNKIT-NWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEECC-CHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cchhc-cccccccccCCCccceeecCCCccccC
Confidence            66655 233  2456666666666666666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=3.7e-08  Score=67.32  Aligned_cols=86  Identities=24%  Similarity=0.264  Sum_probs=60.0

Q ss_pred             CCeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccC--------------------CCccccCCCCCceeecCCC
Q 041065           52 GRVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGT--------------------IPPQISNLSNLRYIYLGSN  111 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~--------------------~p~~~~~l~~L~~L~ls~n  111 (148)
                      .+++.|++++|.+++ ++  .+..+++|+.|++++|.+...                    .+..+..+++|+++++++|
T Consensus        90 ~~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2          90 KNLGWLFLDENKVKD-LS--SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             TTCCEEECCSSCCCC-GG--GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred             ccccccccccccccc-cc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            568888888888764 33  355666666666666544310                    1223556788899999999


Q ss_pred             cccccCCccccCCCCCcEEEccCccccccCCC
Q 041065          112 QFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRM  143 (148)
Q Consensus       112 ~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~  143 (148)
                      ++++ ++. +.++++|+.|++++|+++ .||.
T Consensus       167 ~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~~  195 (210)
T d1h6ta2         167 QISD-IVP-LAGLTKLQNLYLSKNHIS-DLRA  195 (210)
T ss_dssp             CCCC-CGG-GTTCTTCCEEECCSSCCC-BCGG
T ss_pred             cccc-ccc-ccCCCCCCEEECCCCCCC-CChh
Confidence            8884 443 788999999999999987 5663

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.63  E-value=2.3e-10  Score=78.31  Aligned_cols=58  Identities=19%  Similarity=0.294  Sum_probs=45.0

Q ss_pred             CCCCCCCcEEEcccCccccCCC--ccccCCCCCceeecCCCcccccCCcc----------ccCCCCCcEEE
Q 041065           73 FSSFPHLAYLDLTWNGFFGTIP--PQISNLSNLRYIYLGSNQFFGNIPAE----------VGLLSHLEVLH  131 (148)
Q Consensus        73 ~~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L~ls~n~l~g~~p~~----------~~~l~~L~~L~  131 (148)
                      +..+++|+.|++++|.++. ++  ..+..+++|++|++++|.+....+..          +..+++|+.||
T Consensus       111 ~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            5566788999999998873 33  45789999999999999987543332          56789999987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.62  E-value=8.9e-08  Score=68.91  Aligned_cols=75  Identities=17%  Similarity=0.242  Sum_probs=40.5

Q ss_pred             CeEEEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEc
Q 041065           53 RVINISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHI  132 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l  132 (148)
                      ++++|++++|.++ .+|. .   +.+|+.|++++|.++ .++. +  .+.|++|++++|.+. .+|. ++.+++|++|++
T Consensus        59 ~L~~L~Ls~N~l~-~lp~-~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          59 HLESLVASCNSLT-ELPE-L---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TCSEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCc-cccc-c---hhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeecc
Confidence            4455555555544 3332 1   234455555555544 2221 1  134677777777776 5554 466777777777


Q ss_pred             cCcccc
Q 041065          133 QLNRLD  138 (148)
Q Consensus       133 ~~N~l~  138 (148)
                      ++|.+.
T Consensus       128 ~~~~~~  133 (353)
T d1jl5a_         128 DNNSLK  133 (353)
T ss_dssp             CSSCCS
T ss_pred             cccccc
Confidence            777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.43  E-value=5e-07  Score=64.84  Aligned_cols=61  Identities=21%  Similarity=0.326  Sum_probs=51.0

Q ss_pred             CCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCccccCCCCCcEEEccCccccccCCCC
Q 041065           75 SFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAEVGLLSHLEVLHIQLNRLDGSWRMC  144 (148)
Q Consensus        75 ~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~  144 (148)
                      .+++|++|++++|.++ .+|..   +++|+.|++++|+++ .+|..   +.+|+.|++++|+++ .+|+.
T Consensus       282 ~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC
T ss_pred             cCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc
Confidence            3678999999999998 67754   578999999999998 78853   468999999999998 77753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=6.3e-07  Score=61.74  Aligned_cols=86  Identities=14%  Similarity=0.066  Sum_probs=63.5

Q ss_pred             EEEcCCCCccceecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCC-ccccCCCCCcEEEccC
Q 041065           56 NISLPNRGVNGTLHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIP-AEVGLLSHLEVLHIQL  134 (148)
Q Consensus        56 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~l~~  134 (148)
                      .++.++.+++ .+|. .+.  +++++|++++|.++...+..|.++++|++|++++|.+...++ ..|..++.++.+.+..
T Consensus        12 ~i~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVT-EIPS-DLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCS-SCCS-CSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCCCCC-CcCC-CCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4555566666 5665 442  579999999999984444568999999999999999876554 4688899999998764


Q ss_pred             -ccccccCCCCC
Q 041065          135 -NRLDGSWRMCT  145 (148)
Q Consensus       135 -N~l~g~iP~~~  145 (148)
                       |++....|..+
T Consensus        88 ~n~l~~~~~~~~   99 (242)
T d1xwdc1          88 ANNLLYINPEAF   99 (242)
T ss_dssp             CTTCCEECTTSE
T ss_pred             cccccccccccc
Confidence             66764444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.4e-08  Score=62.88  Aligned_cols=79  Identities=15%  Similarity=0.176  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCCccce--ecCCCCCCCCCCcEEEcccCccccCCCccccCCCCCceeecCCCcccccCCcc-------cc
Q 041065           52 GRVINISLPNRGVNGT--LHDFSFSSFPHLAYLDLTWNGFFGTIPPQISNLSNLRYIYLGSNQFFGNIPAE-------VG  122 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~--~p~~~~~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ls~n~l~g~~p~~-------~~  122 (148)
                      ..+++|++++|.++..  ++. .+..+++|+.|++++|.++...+-......+|+.+++++|.++......       +.
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~-~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGT-HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCEeeCCCccccCCchhHH-HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            4677777888777632  122 3455777778888888776322212333446777778887776544322       45


Q ss_pred             CCCCCcEEE
Q 041065          123 LLSHLEVLH  131 (148)
Q Consensus       123 ~l~~L~~L~  131 (148)
                      .+++|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            567777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.2e-08  Score=63.46  Aligned_cols=68  Identities=21%  Similarity=0.271  Sum_probs=53.2

Q ss_pred             CCCCCCCcEEEcccCccccC--CCccccCCCCCceeecCCCcccccCCc-cccCCCCCcEEEccCccccccC
Q 041065           73 FSSFPHLAYLDLTWNGFFGT--IPPQISNLSNLRYIYLGSNQFFGNIPA-EVGLLSHLEVLHIQLNRLDGSW  141 (148)
Q Consensus        73 ~~~l~~L~~L~ls~n~l~g~--~p~~~~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~l~~N~l~g~i  141 (148)
                      ...++.|++|+|++|+++..  ++..+..+++|+.|++++|+++ .++. ......+|+.|++++|.+....
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCc
Confidence            34688999999999999853  2345678999999999999998 4544 3334557999999999987543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2.4e-07  Score=68.61  Aligned_cols=86  Identities=19%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCCccc----eecCCCCCCCCCCcEEEcccCccccC----CCcccc-CCCCCceeecCCCccccc----CC
Q 041065           52 GRVINISLPNRGVNG----TLHDFSFSSFPHLAYLDLTWNGFFGT----IPPQIS-NLSNLRYIYLGSNQFFGN----IP  118 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~----~~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~-~l~~L~~L~ls~n~l~g~----~p  118 (148)
                      .++++|+|++|+++.    .+.. .+..+++|++|||++|.++..    +...+. ...+|++|++++|++++.    ++
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~  105 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  105 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence            356778888887762    2232 456778889999998887532    222222 234789999999888643    44


Q ss_pred             ccccCCCCCcEEEccCcccc
Q 041065          119 AEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       119 ~~~~~l~~L~~L~l~~N~l~  138 (148)
                      ..+..+++|++|++++|.++
T Consensus       106 ~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         106 STLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHTTSCTTCCEEECCSSBCH
T ss_pred             chhhccccccccccccccch
Confidence            56677888999999888775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.8e-06  Score=59.05  Aligned_cols=83  Identities=17%  Similarity=0.185  Sum_probs=52.4

Q ss_pred             CCeEEEEcCCCC--ccc-eecCCCCCCCCCCcEEEcccC-ccccCCCccccCCCCCceeecCCC-cccccCCccccCCCC
Q 041065           52 GRVINISLPNRG--VNG-TLHDFSFSSFPHLAYLDLTWN-GFFGTIPPQISNLSNLRYIYLGSN-QFFGNIPAEVGLLSH  126 (148)
Q Consensus        52 ~~l~~L~l~~n~--l~~-~~p~~~~~~l~~L~~L~ls~n-~l~g~~p~~~~~l~~L~~L~ls~n-~l~g~~p~~~~~l~~  126 (148)
                      ..++.|+++++.  ++. .+.. .+..+++|++|+++++ .+++.....+.++++|++|+++++ .+++.....++++++
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~-l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             cccchhhhcccccccccccccc-cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            357777777642  221 1221 2345677788888775 466566666777777888888774 566555556677777


Q ss_pred             CcEEEccCc
Q 041065          127 LEVLHIQLN  135 (148)
Q Consensus       127 L~~L~l~~N  135 (148)
                      |+.|+++++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.88  E-value=2.6e-06  Score=61.66  Aligned_cols=61  Identities=20%  Similarity=0.248  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCCccce-----ecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCccc
Q 041065           53 RVINISLPNRGVNGT-----LHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFF  114 (148)
Q Consensus        53 ~l~~L~l~~n~l~~~-----~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~  114 (148)
                      .++.|++++|.+...     +.. .+..+++|+.|++++|.++..    +...+..+++|++|++++|.++
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHT-TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhcccccccccccccccccchhh-hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            455566665555421     122 344555566666666555321    2233445555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.2e-06  Score=64.70  Aligned_cols=62  Identities=19%  Similarity=0.165  Sum_probs=28.9

Q ss_pred             CCCcEEEcccCccccC----CCcccc-CCCCCceeecCCCcccc----cCCccccCCCCCcEEEccCcccc
Q 041065           77 PHLAYLDLTWNGFFGT----IPPQIS-NLSNLRYIYLGSNQFFG----NIPAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus        77 ~~L~~L~ls~n~l~g~----~p~~~~-~l~~L~~L~ls~n~l~g----~~p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      ++|++|+|++|.++..    ++..+. ..+.|++|+|++|+++.    .+...+...++|++|++++|+++
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            3455555555555421    222222 23445555555555542    12233444455555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.9e-05  Score=54.87  Aligned_cols=58  Identities=10%  Similarity=0.183  Sum_probs=28.4

Q ss_pred             CeEEEEcCCCC-ccceecCCCCCCCCCCcEEEcccC-ccccCCCccccCCCCCceeecCCC
Q 041065           53 RVINISLPNRG-VNGTLHDFSFSSFPHLAYLDLTWN-GFFGTIPPQISNLSNLRYIYLGSN  111 (148)
Q Consensus        53 ~l~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~ls~n-~l~g~~p~~~~~l~~L~~L~ls~n  111 (148)
                      +++.|+++++. +++.... .+..+++|++|+++++ .+++.....++++++|++|+++++
T Consensus       176 ~L~~L~L~~~~~itd~~~~-~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccCCCchhhh-hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            45555555532 3333332 4455555555555552 344433344555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.67  E-value=3.6e-06  Score=60.88  Aligned_cols=86  Identities=17%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccccCCC----ccccC--CCCCceeecCCCccccc----C
Q 041065           52 GRVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGTIP----PQISN--LSNLRYIYLGSNQFFGN----I  117 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~~p----~~~~~--l~~L~~L~ls~n~l~g~----~  117 (148)
                      .+++.|++++|.++..    +.. .+...++|++|++++|.+++.-.    ..+..  .+.|++|++++|+++..    +
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~-~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             hhhcccccccccccccccccccc-cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHH
Confidence            5789999999998632    333 56788999999999999975422    22332  36799999999998742    2


Q ss_pred             Cccc-cCCCCCcEEEccCcccc
Q 041065          118 PAEV-GLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       118 p~~~-~~l~~L~~L~l~~N~l~  138 (148)
                      ...+ .++++|++|++++|.|.
T Consensus       294 ~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         294 KTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHccCCCCCEEECCCCcCC
Confidence            3333 25788999999999986

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.35  E-value=2.6e-05  Score=50.94  Aligned_cols=85  Identities=11%  Similarity=0.011  Sum_probs=44.3

Q ss_pred             CCeEEEEcCCCCccceecC---CCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc-------C
Q 041065           52 GRVINISLPNRGVNGTLHD---FSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN-------I  117 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~~p~---~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~-------~  117 (148)
                      ..+++|++++|.+......   ..+...+.|++|++++|.++..    +-..+..-++|++|++++|.+...       +
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            4566777777766532111   0223345677777777766532    122344556677777776654310       1


Q ss_pred             CccccCCCCCcEEEccCcc
Q 041065          118 PAEVGLLSHLEVLHIQLNR  136 (148)
Q Consensus       118 p~~~~~l~~L~~L~l~~N~  136 (148)
                      ...+..-++|+.|+++.+.
T Consensus       124 ~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         124 MMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCCccEeeCcCCC
Confidence            2223334566666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.60  E-value=0.0002  Score=46.54  Aligned_cols=87  Identities=13%  Similarity=0.135  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCC-Cccce----ecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeecCCCccccc----C
Q 041065           51 AGRVINISLPNR-GVNGT----LHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYLGSNQFFGN----I  117 (148)
Q Consensus        51 ~~~l~~L~l~~n-~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~ls~n~l~g~----~  117 (148)
                      ..++++|+|+++ .+...    +-. .+...+.|++|++++|.+...    +...+...+.|+.|++++|.++..    +
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~-~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHH-HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            357999999874 45432    222 456678899999999998643    223445568899999999999742    2


Q ss_pred             CccccCCCCCcEEEccCcccc
Q 041065          118 PAEVGLLSHLEVLHIQLNRLD  138 (148)
Q Consensus       118 p~~~~~l~~L~~L~l~~N~l~  138 (148)
                      -..+..-++|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            234566688999999988654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.36  E-value=0.0021  Score=41.21  Aligned_cols=85  Identities=14%  Similarity=0.105  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCCCccce----ecCCCCCCCCCCcEEEcccCccccC----CCccccCCCCCceeec--CCCcccc----cC
Q 041065           52 GRVINISLPNRGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGT----IPPQISNLSNLRYIYL--GSNQFFG----NI  117 (148)
Q Consensus        52 ~~l~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~l--s~n~l~g----~~  117 (148)
                      .++++|++++|.++..    +.. .+...+.++.+++++|.+...    +-..+...++|+.++|  +.|.+..    .+
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~-~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHH-HHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence            5688888888876532    111 234556788888888877533    2234556677776444  4566642    23


Q ss_pred             CccccCCCCCcEEEccCccc
Q 041065          118 PAEVGLLSHLEVLHIQLNRL  137 (148)
Q Consensus       118 p~~~~~l~~L~~L~l~~N~l  137 (148)
                      -..+...+.|+.|+++.+..
T Consensus       125 a~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCcCEEeCcCCCC
Confidence            34455667888888876653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.39  E-value=0.0073  Score=38.53  Aligned_cols=87  Identities=13%  Similarity=0.111  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCC-CCccce----ecCCCCCCCCCCcEEEcccCccccCC----CccccCCCCCceeecCCCccccc----C
Q 041065           51 AGRVINISLPN-RGVNGT----LHDFSFSSFPHLAYLDLTWNGFFGTI----PPQISNLSNLRYIYLGSNQFFGN----I  117 (148)
Q Consensus        51 ~~~l~~L~l~~-n~l~~~----~p~~~~~~l~~L~~L~ls~n~l~g~~----p~~~~~l~~L~~L~ls~n~l~g~----~  117 (148)
                      ...+++|++++ +.++..    +-. .+...++|++|++++|.++...    -..+...+.++.+++++|.+...    +
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~-al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHH-HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            46799999997 455421    222 4567889999999999986442    23345668999999999998632    3


Q ss_pred             CccccCCCCCcEEEc--cCcccc
Q 041065          118 PAEVGLLSHLEVLHI--QLNRLD  138 (148)
Q Consensus       118 p~~~~~l~~L~~L~l--~~N~l~  138 (148)
                      -..+...++|+.++|  ++|.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHhCccccEEeeccCCCcCc
Confidence            345667788987666  456654