Citrus Sinensis ID: 041077

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFVIMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKDIEPGVVNEARPRLYKTLNNYNRLYFENLRRVKKGIEAAML
cHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccccccccccccccccEEEEEccccccEEEEEccEEEEccccccEEEEEEcccccccccEEEccccccEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccc
cHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEccccccccccHHcEEEEEEcccccccHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEcccccccccccEcccccccccccEEEEEcccccccEEEEEcccEEEcccEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEccccccccccccccccccccEEEEEccccccccEEEEcc
LEKLGTalcfwgcfqainhgiepafLDKVREVTKKFFALPLEEKQKYAkqngsdggygndihptlnwsdrLFLALIpedrrqlkfwpenpesFSQIIFKAFARSINleencfqdmfgeqtfmfgrffwyppclrpnlvlgvfphtdgsgltvllpdkeveglqflkddqwyrvpvipeafvimsngifkspvhrvvtnserERMSVAVfccpnpekdiepgvvnearpRLYKTLNNYNRLYFENLRRVKKGIEAAML
LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQflkddqwyrVPVIPEAFVimsngifksPVHRVVTNSERERMSVAVFCCpnpekdiepgvvnearprlyktlnnynrlyfenlRRVKKGIEAAML
LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFVIMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKDIEPGVVNEARPRLYKTLNNYNRLYFENLRRVKKGIEAAML
****GTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEE***********GGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFVIMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKDIEPGVVNEARPRLYKTLNNYNRLYFENLRRVK********
LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKY*KQ****GGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFVIMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKDIEPGVVNEARPRLYKTLNNYNRLYFENLRRVKKGIEAAML
LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFVIMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKDIEPGVVNEARPRLYKTLNNYNRLYFENLRRVKKGIEAAML
LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFVIMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKDIEPGVVNEARPRLYKTLNNYNRLYFENLRRVKKGIEAAML
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQIIFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFVIMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKDIEPGVVNEARPRLYKTLNNYNRLYFENLRRVKKGIEAAML
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query257 2.2.26 [Sep-21-2011]
D4N502360 Codeine O-demethylase OS= N/A no 0.968 0.691 0.357 1e-39
Q9M547334 Flavonol synthase/flavano N/A no 0.859 0.661 0.389 2e-39
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.933 0.712 0.356 4e-38
Q39224358 Protein SRG1 OS=Arabidops no no 0.976 0.701 0.329 5e-36
D4N501364 Probable 2-oxoglutarate/F N/A no 0.941 0.664 0.324 7e-36
P51091357 Leucoanthocyanidin dioxyg N/A no 0.891 0.641 0.349 9e-36
Q07512348 Flavonol synthase/flavano N/A no 0.894 0.660 0.353 1e-35
D4N500364 Thebaine 6-O-demethylase N/A no 0.968 0.684 0.325 5e-35
Q41452349 Flavonol synthase/flavano N/A no 0.883 0.650 0.334 4e-34
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.863 0.662 0.342 5e-33
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function desciption
 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 147/280 (52%), Gaps = 31/280 (11%)

Query: 1   LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGND 60
           L+KL +A   WG FQ +NHG++   +D ++   K FF LP+ EK KY +Q+G   G+G  
Sbjct: 74  LDKLHSACKEWGFFQLVNHGVDALLMDNIKSEIKGFFNLPMNEKTKYGQQDGDFEGFGQP 133

Query: 61  IHPT----LNWSDRLFLALIPEDRRQLKFWPENPESF--------------SQIIFKAFA 102
              +    L+W++   +  +P   R+   +PE P  F              S ++F+   
Sbjct: 134 YIESEDQRLDWTEVFSMLSLPLHLRKPHLFPELPLPFRETLESYLSKMKKLSTVVFEMLE 193

Query: 103 RSINLEE-NCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEG 161
           +S+ L E     D+F E      R  +YPPC RP LVLG+  H+D SGLT+LL   EVEG
Sbjct: 194 KSLQLVEIKGMTDLF-EDGLQTMRMNYYPPCPRPELVLGLTSHSDFSGLTILLQLNEVEG 252

Query: 162 LQFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFCCPN 213
           LQ  K+++W  +  +P+AF+        IM+NGI++S  HR V NS +ER+S+A F    
Sbjct: 253 LQIRKEERWISIKPLPDAFIVNVGDILEIMTNGIYRSVEHRAVVNSTKERLSIATFHDSK 312

Query: 214 PEKDIEP--GVVNEARPRLYKTLNNYNRLYFENLRRVKKG 251
            E +I P   +V    P L+K    Y  +  ENL R   G
Sbjct: 313 LESEIGPISSLVTPETPALFKR-GRYEDILKENLSRKLDG 351
Non-heme dioxygenase catalyzing the conversion of codeine to morphine. Catalyzes also, with lower efficiency, the 3-O-demethylation of thebaine to oripavine and of (S)-scoulerine to 3-O-demethylscoulerine. No activity with (S)-reticuline, salutaridine, papaverine, (S)-corytuberine, oripavine, pavine or noscapine.
Papaver somniferum (taxid: 3469)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 3EC: 2
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|Q41452|FLS_SOLTU Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
2688828348 ethylene-forming-enzyme-like dioxygenase 1.0 0.738 0.547 4e-85
296084534 381 unnamed protein product [Vitis vinifera] 0.980 0.661 0.557 6e-82
225446211 377 PREDICTED: protein SRG1 [Vitis vinifera] 0.980 0.668 0.557 6e-82
224120306347 predicted protein [Populus trichocarpa] 1.0 0.740 0.512 1e-81
224142523353 predicted protein [Populus trichocarpa] 1.0 0.728 0.545 1e-81
297847230348 oxidoreductase [Arabidopsis lyrata subsp 1.0 0.738 0.519 2e-81
15222131348 2-oxoglutarate (2OG) and Fe(II)-dependen 1.0 0.738 0.519 1e-80
359806096351 uncharacterized protein LOC100799195 [Gl 1.0 0.732 0.526 5e-80
297808105348 hypothetical protein ARALYDRAFT_488949 [ 1.0 0.738 0.526 6e-79
356508202356 PREDICTED: codeine O-demethylase-like [G 1.0 0.721 0.508 3e-76
>gi|2688828|gb|AAB88878.1| ethylene-forming-enzyme-like dioxygenase [Prunus armeniaca] Back     alignment and taxonomy information
 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 156/285 (54%), Positives = 207/285 (72%), Gaps = 28/285 (9%)

Query: 1   LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGND 60
           LEKL +AL  WGCFQ INHG+ P FLD+VRE+TK+FFALP+EEKQ+Y +Q     GYGND
Sbjct: 64  LEKLRSALTTWGCFQVINHGMTPEFLDEVREMTKQFFALPVEEKQQYLRQVNDIQGYGND 123

Query: 61  I----HPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQI--------------IFKAFA 102
           +      TL+WSDRL+L++ PE+ R+LKFW ++P+SFS+               + +A A
Sbjct: 124 MVFSEQQTLDWSDRLYLSVYPEEHRKLKFWAQDPKSFSETLHQYTMKLQVVTKTVLEAMA 183

Query: 103 RSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGL 162
           RS+NL+ NCF+D++GEQ  M  RF +YPPC RP++VLGV PH DG+ +T+LL DK+VEGL
Sbjct: 184 RSLNLDVNCFRDLYGEQGKMDVRFNFYPPCSRPDVVLGVKPHADGTIITLLLQDKQVEGL 243

Query: 163 QFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFCCPNP 214
           QFLKDDQW+R P++PEA +        I+SNGIFKSPVHRVVTN ++ER+S+A FC P  
Sbjct: 244 QFLKDDQWFRAPIVPEALLINVGDQAEILSNGIFKSPVHRVVTNPDKERISLAAFCIPES 303

Query: 215 EKDIEP--GVVNEARPRLYKTLNNYNRLYFENLRRVKKGIEAAML 257
           +KDIEP   +VNE+ P LYK + NY  +YFE  ++ K+ IEAA +
Sbjct: 304 DKDIEPFESLVNESTPGLYKKVKNYVGIYFEYYQQGKRPIEAAKI 348

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296084534|emb|CBI25555.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225446211|ref|XP_002263317.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224120306|ref|XP_002331015.1| predicted protein [Populus trichocarpa] gi|222872945|gb|EEF10076.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142523|ref|XP_002324605.1| predicted protein [Populus trichocarpa] gi|222866039|gb|EEF03170.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297847230|ref|XP_002891496.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297337338|gb|EFH67755.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222131|ref|NP_175364.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|5430761|gb|AAD43161.1|AC007504_16 Similar to ethylene-forming-enzyme-like dioxygenase [Arabidopsis thaliana] gi|332194303|gb|AEE32424.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359806096|ref|NP_001241442.1| uncharacterized protein LOC100799195 [Glycine max] gi|255640143|gb|ACU20362.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297808105|ref|XP_002871936.1| hypothetical protein ARALYDRAFT_488949 [Arabidopsis lyrata subsp. lyrata] gi|297317773|gb|EFH48195.1| hypothetical protein ARALYDRAFT_488949 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356508202|ref|XP_003522848.1| PREDICTED: codeine O-demethylase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.750 0.554 0.525 9.6e-57
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.750 0.554 0.506 4.9e-53
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.750 0.553 0.497 1.5e-51
TAIR|locus:2149907349 AT5G20550 [Arabidopsis thalian 0.715 0.527 0.516 8.3e-51
TAIR|locus:2127218356 LDOX "leucoanthocyanidin dioxy 0.463 0.334 0.361 1.3e-31
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.525 0.386 0.358 2.3e-28
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.509 0.347 0.368 3.4e-28
TAIR|locus:2182875380 GA20OX3 "gibberellin 20-oxidas 0.517 0.35 0.377 9.1e-28
TAIR|locus:2206036376 GA20OX4 "gibberellin 20-oxidas 0.517 0.353 0.363 1.7e-27
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.762 0.538 0.364 7.3e-27
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 114/217 (52%), Positives = 152/217 (70%)

Query:    65 LNWSDRLFLALIPEDRRQLKFWPENPESFSQII--------------FKAFARSINLEEN 110
             L+W DRLFL   PED+RQLKFWP+ P  FS+ +              FKA ARS+ LEEN
Sbjct:   132 LDWIDRLFLTTYPEDKRQLKFWPQVPVGFSETLDEYTMKQRVLIEKFFKAMARSLELEEN 191

Query:   111 CFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQFLKDDQW 170
             CF +M+GE   M  RF ++PPC RP+ V+G+ PH DGS +T+LLPDK+VEGLQFLKD +W
Sbjct:   192 CFLEMYGENAVMNSRFNFFPPCPRPDKVIGIKPHADGSAITLLLPDKDVEGLQFLKDGKW 251

Query:   171 YRVPVIPEAFVI--------MSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKDIEP-- 220
             Y+ P++P+  +I        MSNGI+KSPVHRVVTN E+ER+SVA FC P  +K+I P  
Sbjct:   252 YKAPIVPDTILITLGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCVPGLDKEIHPAD 311

Query:   221 GVVNEARPRLYKTLNNYNRLYFENLRRVKKGIEAAML 257
             G+V EARPRLYKT+  Y  L+++  ++ ++ IEAA++
Sbjct:   312 GLVTEARPRLYKTVTKYVDLHYKYYQQGRRTIEAALI 348
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149907 AT5G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127218 LDOX "leucoanthocyanidin dioxygenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182875 GA20OX3 "gibberellin 20-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206036 GA20OX4 "gibberellin 20-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006404001
SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (377 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00008183001
SubName- Full=Chromosome undetermined scaffold_1274, whole genome shotgun sequence; (163 aa)
  •     0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-112
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-62
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 6e-59
PLN02216357 PLN02216, PLN02216, protein SRG1 4e-53
PLN02704335 PLN02704, PLN02704, flavonol synthase 4e-53
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-49
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-45
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-38
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-36
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-35
PLN02997325 PLN02997, PLN02997, flavonol synthase 8e-33
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-32
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-32
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 5e-32
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 7e-32
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-31
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 6e-29
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-27
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 3e-25
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-25
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-23
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-22
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-20
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 4e-19
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 5e-15
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 9e-15
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-12
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 1e-07
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  324 bits (833), Expect = e-112
 Identities = 152/285 (53%), Positives = 197/285 (69%), Gaps = 28/285 (9%)

Query: 1   LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGND 60
           L KL +AL  WG  Q +NHGI  AFLDK+ ++TK+FFALP EEKQK A++ GS  GYGND
Sbjct: 64  LSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYGND 123

Query: 61  I----HPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQII--------------FKAFA 102
           +       L+W DRL+L   PED+RQLKFWP+ P  F + +              FKA A
Sbjct: 124 MILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMA 183

Query: 103 RSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGL 162
           RS+ LEENCF +M+GE   M  RF  YPPC RP+ V+GV PH DGS  T+LLPDK+VEGL
Sbjct: 184 RSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEGL 243

Query: 163 QFLKDDQWYRVPVIPEAFVI--------MSNGIFKSPVHRVVTNSERERMSVAVFCCPNP 214
           QFLKD +WY+ P++P+  +I        MSNGI+KSPVHRVVTN E+ER+SVA FC P  
Sbjct: 244 QFLKDGKWYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCIPGA 303

Query: 215 EKDIEP--GVVNEARPRLYKTLNNYNRLYFENLRRVKKGIEAAML 257
           +K+I+P  G+V+EARPRLYKT+  Y  L+F+  ++ ++ IEAA++
Sbjct: 304 DKEIQPVDGLVSEARPRLYKTVKKYVELFFKYYQQGRRPIEAALI 348

Length = 348
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 257
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02904357 oxidoreductase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02485329 oxidoreductase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.85
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.81
PLN03176120 flavanone-3-hydroxylase; Provisional 99.57
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.46
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 96.42
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.47
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 92.31
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 91.78
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 90.08
TIGR02466201 conserved hypothetical protein. This family consis 83.78
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=6.8e-67  Score=466.47  Aligned_cols=257  Identities=38%  Similarity=0.684  Sum_probs=234.2

Q ss_pred             ChHHHHHhhhccEEEEEccCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCCcccCCC----CCCCChhhhhhhccC
Q 041077            1 LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGNDI----HPTLNWSDRLFLALI   76 (257)
Q Consensus         1 ~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~Gy~~~~----~~~~d~~e~~~~~~~   76 (257)
                      +++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++...++.++||+...    .+..||+|.|.+...
T Consensus        71 ~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~  150 (357)
T PLN02216         71 VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQ  150 (357)
T ss_pred             HHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeecc
Confidence            3689999999999999999999999999999999999999999999977655678997653    445799999987766


Q ss_pred             CccccccCCCCCCchhhHHH--------------HHHHHHHHcCCChhhhHhhhccCCcceeeeeecCCCCCCCCccccc
Q 041077           77 PEDRRQLKFWPENPESFSQI--------------IFKAFARSINLEENCFQDMFGEQTFMFGRFFWYPPCLRPNLVLGVF  142 (257)
Q Consensus        77 p~~~~~~~~wP~~~~~f~~~--------------ll~~la~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~  142 (257)
                      |......|.||+.++.|+++              ||++||++||+++++|.+.+.....+.||++|||||+.++..+|++
T Consensus       151 p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~  230 (357)
T PLN02216        151 PVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLT  230 (357)
T ss_pred             CcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCcc
Confidence            65556688999888899887              9999999999999999988854455789999999999888889999


Q ss_pred             ccCCCCcEEEEecCCCCCceEEeeCCeEEEecCCCCcEE--------EeeCCeecCCCceeccCCCCCeeEEEEeecCCC
Q 041077          143 PHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFCCPNP  214 (257)
Q Consensus       143 ~HtD~~~lTlL~q~~~~~GLqV~~~g~W~~V~p~~g~lv--------~~Tng~~~s~~HRV~~~~~~~R~S~~~F~~p~~  214 (257)
                      +|||+|+||||+|+++++||||+++|+|++|+|.||++|        +||||+|+|+.|||+.++.++|+|++||++|+.
T Consensus       231 ~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~  310 (357)
T PLN02216        231 PHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGM  310 (357)
T ss_pred             CcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCC
Confidence            999999999999955799999999999999999999999        999999999999999988889999999999999


Q ss_pred             Cceeec--cccCCCCCCCCCChH--HHHHHHHHhhhcccchhhhhcC
Q 041077          215 EKDIEP--GVVNEARPRLYKTLN--NYNRLYFENLRRVKKGIEAAML  257 (257)
Q Consensus       215 d~~i~p--~~~~~~~~~~y~~~~--e~~~~~~~~~~~~~~~~~~~~~  257 (257)
                      |++|+|  +++++++|++|++++  ||+..++.....++..+|.+||
T Consensus       311 d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        311 GKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            999999  999999999999999  9999999998889999999987

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-33
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-33
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 5e-33
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-21
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 8e-11
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 126/246 (51%), Gaps = 31/246 (12%)
Query: 1   LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYA--KQNGSDGGYG 58
           +E+L  A   WG    INHGI    +++V++  ++FF+L +EEK+KYA  +  G   GYG
Sbjct: 66  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 59  ----NDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQI--------------IFKA 100
               N+    L W D  F    PE++R L  WP+ P  + +               +FKA
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 101 FARSINLEENCFQDMFG--EQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKE 158
            +  + LE +  +   G  E+  +  +  +YP C +P L LGV  HTD S LT +L +  
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM- 244
Query: 159 VEGLQFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFC 210
           V GLQ   + +W     +P++ V        I+SNG +KS +HR + N E+ R+S AVFC
Sbjct: 245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 304
Query: 211 CPNPEK 216
            P  +K
Sbjct: 305 EPPKDK 310
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 6e-98
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-97
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 9e-62
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 3e-57
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 6e-52
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-50
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  288 bits (739), Expect = 6e-98
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 34/275 (12%)

Query: 1   LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGND 60
           +E +  A   WG F+ +NHGI    +D V ++TK  +   +E++ K    + +  G   +
Sbjct: 21  MEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAE 80

Query: 61  IHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQI--------------IFKAFARSIN 106
               ++W    FL  +P     +   P+  E + ++              +      ++ 
Sbjct: 81  -VTDMDWESTFFLKHLPI--SNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLG 137

Query: 107 LEENCFQDMF--GEQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKEVEGLQF 164
           LE+   ++ F   +      +   YPPC +P+L+ G+  HTD  G+ +L  D +V GLQ 
Sbjct: 138 LEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQL 197

Query: 165 LKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEK 216
           LKD QW  VP +  + V        +++NG +KS +HRV+   +  RMS+A F  P  + 
Sbjct: 198 LKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDA 257

Query: 217 DIEP-----GVVNEARPRLYK--TLNNYNRLYFEN 244
            I P         E   ++Y     ++Y +LY   
Sbjct: 258 VIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGL 292
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 96.13
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 94.63
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 93.69
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.85
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 91.59
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 91.1
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 89.44
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 84.58
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 84.36
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-64  Score=450.39  Aligned_cols=251  Identities=34%  Similarity=0.647  Sum_probs=226.9

Q ss_pred             hHHHHHhhhccEEEEEccCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccC--CCCCcccCCC----CCCCChhhhhhhcc
Q 041077            2 EKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQN--GSDGGYGNDI----HPTLNWSDRLFLAL   75 (257)
Q Consensus         2 ~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~Gy~~~~----~~~~d~~e~~~~~~   75 (257)
                      ++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++....  ..++||+...    .+..||+|.|.++.
T Consensus        68 ~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~  147 (356)
T 1gp6_A           68 EELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLA  147 (356)
T ss_dssp             HHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEE
T ss_pred             HHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeec
Confidence            68999999999999999999999999999999999999999999997763  4689998764    45789999999887


Q ss_pred             CCccccccCCCCCCchhhHHH--------------HHHHHHHHcCCChhhhHhhhcc--CCcceeeeeecCCCCCCCCcc
Q 041077           76 IPEDRRQLKFWPENPESFSQI--------------IFKAFARSINLEENCFQDMFGE--QTFMFGRFFWYPPCLRPNLVL  139 (257)
Q Consensus        76 ~p~~~~~~~~wP~~~~~f~~~--------------ll~~la~~Lgl~~~~~~~~~~~--~~~~~lr~~~Yp~~~~~~~~~  139 (257)
                      .|......|.||+.+|+|+++              ||++||++||+++++|.+.+..  .+.+.||++|||||+.++..+
T Consensus       148 ~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~  227 (356)
T 1gp6_A          148 YPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELAL  227 (356)
T ss_dssp             ESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCC
T ss_pred             CCccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCccccc
Confidence            665445678999989999887              9999999999999999988842  467899999999999888889


Q ss_pred             cccccCCCCcEEEEecCCCCCceEEeeCCeEEEecCCCCcEE--------EeeCCeecCCCceeccCCCCCeeEEEEeec
Q 041077          140 GVFPHTDGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFCC  211 (257)
Q Consensus       140 g~~~HtD~~~lTlL~q~~~~~GLqV~~~g~W~~V~p~~g~lv--------~~Tng~~~s~~HRV~~~~~~~R~S~~~F~~  211 (257)
                      |+++|||+|+||||+| |+++||||+++|+|++|+|.||++|        +||||+|+|+.|||+.++..+|+|++||++
T Consensus       228 g~~~HtD~g~lTlL~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~  306 (356)
T 1gp6_A          228 GVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE  306 (356)
T ss_dssp             SEEEECCCSSEEEEEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEE
T ss_pred             CcCCccCCCeEEEEEE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeec
Confidence            9999999999999999 7899999999999999999999999        999999999999999988889999999999


Q ss_pred             CCCCc-eeec--cccCCCCCCCCCChH--HHHHHHHHhhhcccchhh
Q 041077          212 PNPEK-DIEP--GVVNEARPRLYKTLN--NYNRLYFENLRRVKKGIE  253 (257)
Q Consensus       212 p~~d~-~i~p--~~~~~~~~~~y~~~~--e~~~~~~~~~~~~~~~~~  253 (257)
                      |+.|+ +|+|  +++++++|++|++++  ||+..+++++..++...+
T Consensus       307 P~~d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~~~  353 (356)
T 1gp6_A          307 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSE  353 (356)
T ss_dssp             CCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC---
T ss_pred             CCCCCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCcchhhh
Confidence            99999 9999  899999999999999  999999988777755433
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 257
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 3e-43
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 5e-43
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-34
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-23
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  147 bits (372), Expect = 3e-43
 Identities = 82/265 (30%), Positives = 128/265 (48%), Gaps = 34/265 (12%)

Query: 1   LEKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGY--- 57
           +E+L  A   WG    INHGI    +++V++  ++FF+L +EEK+KYA    +       
Sbjct: 66  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125

Query: 58  ---GNDIHPTLNWSDRLFLALIPEDRRQLKFWPENPESFSQII--------------FKA 100
               N+    L W D  F    PE++R L  WP+ P  + +                FKA
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185

Query: 101 FARSINLEENCFQDMFG--EQTFMFGRFFWYPPCLRPNLVLGVFPHTDGSGLTVLLPDKE 158
            +  + LE +  +   G  E+  +  +  +YP C +P L LGV  HTD S LT +L +  
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-M 244

Query: 159 VEGLQFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFC 210
           V GLQ   + +W     +P++ V        I+SNG +KS +HR + N E+ R+S AVFC
Sbjct: 245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 304

Query: 211 CPNPEKDIE---PGVVNEARPRLYK 232
            P  +K +    P +V+   P  + 
Sbjct: 305 EPPKDKIVLKPLPEMVSVESPAKFP 329
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 93.61
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 92.36
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=9.1e-61  Score=417.71  Aligned_cols=252  Identities=29%  Similarity=0.565  Sum_probs=217.4

Q ss_pred             hHHHHHhhhccEEEEEccCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCCcccCCCCCCCChhhhhhhccCCcccc
Q 041077            2 EKLGTALCFWGCFQAINHGIEPAFLDKVREVTKKFFALPLEEKQKYAKQNGSDGGYGNDIHPTLNWSDRLFLALIPEDRR   81 (257)
Q Consensus         2 ~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~Gy~~~~~~~~d~~e~~~~~~~p~~~~   81 (257)
                      ++|.+||+++|||||+||||+.++++++++.++.||++|.|+|.++...+..+.||.... ...||+|.|.+...+.  .
T Consensus        21 ~~l~~A~~~~GFF~l~nHGI~~~li~~~~~~~~~fF~lp~e~K~k~~~~~~~~~g~~~~~-~~~d~~e~~~~~~~~~--~   97 (307)
T d1w9ya1          21 EMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEV-TDMDWESTFFLKHLPI--S   97 (307)
T ss_dssp             HHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCG-GGCCCCEEEEEEEESC--C
T ss_pred             HHHHHHHHcCeEEEEEcCCCCHHHHHHHHHHHHHHHhCcHHHhhhhhcCCCCCcCccccc-cccChhhhcccccccc--c
Confidence            688999999999999999999999999999999999999999998766545567776543 5578999988765543  3


Q ss_pred             ccCCCCCCchhhHHH--------------HHHHHHHHcCCChhhhHhhhcc--CCcceeeeeecCCCCCCCCcccccccC
Q 041077           82 QLKFWPENPESFSQI--------------IFKAFARSINLEENCFQDMFGE--QTFMFGRFFWYPPCLRPNLVLGVFPHT  145 (257)
Q Consensus        82 ~~~~wP~~~~~f~~~--------------ll~~la~~Lgl~~~~~~~~~~~--~~~~~lr~~~Yp~~~~~~~~~g~~~Ht  145 (257)
                      ..+.||+.+++|+++              |+++|+++||+++++|.+.+..  .+.+.+|++||||++.++...|+++||
T Consensus        98 ~~~~~~~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~Ht  177 (307)
T d1w9ya1          98 NISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHT  177 (307)
T ss_dssp             GGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBC
T ss_pred             CcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHhhhhccccccccceecCCCCCccccccccccccc
Confidence            356799889999876              9999999999999999887632  456789999999999888888999999


Q ss_pred             CCCcEEEEecCCCCCceEEeeCCeEEEecCCCCcEE--------EeeCCeecCCCceeccCCCCCeeEEEEeecCCCCce
Q 041077          146 DGSGLTVLLPDKEVEGLQFLKDDQWYRVPVIPEAFV--------IMSNGIFKSPVHRVVTNSERERMSVAVFCCPNPEKD  217 (257)
Q Consensus       146 D~~~lTlL~q~~~~~GLqV~~~g~W~~V~p~~g~lv--------~~Tng~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~~  217 (257)
                      |+|+||||+|++.++||||.++|+|++|+|.+|++|        +||||+|+||.|||+.+++.+||||+||++|+.|++
T Consensus       178 D~~~lTlL~q~~~~ggl~~~~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~  257 (307)
T d1w9ya1         178 DAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAV  257 (307)
T ss_dssp             CSSSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCE
T ss_pred             ccceeEEeeccCCCCeEEEecCCcEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCCCCE
Confidence            999999999955789999999999999999999988        999999999999999998889999999999999999


Q ss_pred             eec--cccC---CCCCCCCCChH--HHHHHHHHhhhcccc-hhhhhc
Q 041077          218 IEP--GVVN---EARPRLYKTLN--NYNRLYFENLRRVKK-GIEAAM  256 (257)
Q Consensus       218 i~p--~~~~---~~~~~~y~~~~--e~~~~~~~~~~~~~~-~~~~~~  256 (257)
                      |+|  ++++   +++|++|++++  ||++.+++.++.+|+ .++++|
T Consensus       258 i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  304 (307)
T d1w9ya1         258 IYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMK  304 (307)
T ss_dssp             ECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHHHHHHHH
T ss_pred             EeCCHHHhcccCccCCCCCCCeeHHHHHHHHHhccCCcccHHHHHhh
Confidence            998  7775   56799999999  999998888777655 366554
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure