Citrus Sinensis ID: 041107

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVRSKAVEDESED
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccEEccccccccHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccHHHHHccccccccHHHHHHHcccHHHHHHHHHccccHHHEccccccccHHHHHHHcccHHHHHHHHHHccHHHHHcccccccHHHHHHHcccHHHHHHHHHcccHHHHHHcccccccccHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHcHHcccccccccccccccccccccccHHHccccHcHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHEEEHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
vplllldkkksltrerdrhgwtplhyAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHcpeccevvddrgwNVLHFAMVSFYARDLKHLVDKYPAVRNLIfkkdvkgntpFHVLAAVCRQSYdarydivpWKIAKAHFQATnkqnisaehiyrygfpdLEQEIQELSkadgsgqypdgvvkmnknkkianysfwkdldedvigmkEASESHLVVAALIATVTFAAaftlpggyksdteddpnkgtailsknaafqSFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVRSkavedesed
Flexible Loop (DISEMBL)
vplllldkkksltrerdrhgwtplhYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIfkkdvkgntPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVRskavedesed
Low Complexity Region (SEG)
VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHlvvaaliatvtfaaaftlPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHfilslkffrkfiflfvfalSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVRSKAVEDESED
Disordered region (IsUnstruct)
*****************RHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLE******************VVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAALIATVTFAAAFTLPGGY***********TAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVR**********
Disordered Region (DISOPRED)
VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVRS**V******
Disordered Region (DISEMBL)
VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVRS*********
Disordered Region (DISPRO)
VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADG*******************Y*******EDVIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVRSKAVE*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVRSKAVEDESED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.898	0.569	0.25	8e-16
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.898	0.641	0.248	5e-10
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.711	0.5	0.238	8e-10
Q9XZC0	1413	Alpha-latrocrustotoxin-Lt	N/A	no	0.294	0.077	0.278	1e-05
Q25338	1214	Delta-latroinsectotoxin-L	N/A	no	0.334	0.102	0.255	3e-05
P97570	807	85/88 kDa calcium-indepen	yes	no	0.312	0.144	0.269	0.0001
P97819	807	85/88 kDa calcium-indepen	no	no	0.312	0.144	0.269	0.0001
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.334	0.063	0.299	0.0002
O74205	441	Transcription factor TOXE	N/A	no	0.334	0.283	0.301	0.0006
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.331	0.028	0.301	0.0008

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 170/400 (42%), Gaps = 64/400 (16%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
           +LLD   +L++       TPL  A       +   LL    +   IS  + K  ALHLAA
Sbjct: 182 VLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNK-NALHLAA 240

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD 123
            +G V +++ ++   P+    +D +G   LH A+    +  +K L+D  PA+   + + D
Sbjct: 241 RQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAI---VMQPD 297

Query: 124 VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY----GFPDLE 179
              NT  HV       +   R +IV   ++      TN   ++ +H        G P  E
Sbjct: 298 KSCNTALHV------ATRKKRAEIVELLLS---LPDTNANTLTRDHKTALDIAEGLPLSE 348

Query: 180 QE--IQELSKADGS-----------------GQYPDGV-VKMNKNKKIAN--YSFWKDLD 217
           +   I+E     G+                  Q  + V +++ + K+     ++  K+L 
Sbjct: 349 ESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELR 408

Query: 218 E-DVIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSF 276
           +    G+  A+ S  VVA L ATV FAA FT+PGG       D N G+A++   A+F+ F
Sbjct: 409 KLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-------DNNDGSAVVVGRASFKIF 461

Query: 277 VVSDAIAMVLSLSAVFVHFIL----------SLKFFRKFIFLFVFALSFTLVAMAAMIVA 326
            + +A+A+  SL+ V V   L           ++   K ++L     S   +A + ++V 
Sbjct: 462 FIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVG 521

Query: 327 FVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKVRSK 366
                 A L   +G  I+  ++G          +Y V+SK
Sbjct: 522 RKNEWAAELVTVVGGVIMAGVLG-------TMTYYVVKSK 554

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 159/387 (41%), Gaps = 51/387 (13%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
           +L++    L+   D    T LH A       I   LL+     A I+  + K TALH AA
Sbjct: 109 VLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGK-TALHSAA 167

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD 123
             G   +V+++I+        VD +G   LH A+       +  L++   A  +LI   D
Sbjct: 168 RNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME---ADGSLINSAD 224

Query: 124 VKGNTPFHVLAAVCRQSYDARYDIVP--WKIAKAHFQATNKQNISAEHI-YRYGFPDLEQ 180
            KGNTP H+     R++   R +IV    K  +    A NK   +A  I  + G  ++  
Sbjct: 225 NKGNTPLHI---AVRKN---RAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVP 278

Query: 181 EIQELSKADGSGQYP-DGVVKMNKNKKIA------NYSFWKDLDED-------------- 219
            +Q++   +     P + V     ++K+        +     L++               
Sbjct: 279 LLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRV 338

Query: 220 ----VIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDP---NKGTAILSKNAA 272
                 G+  A  S  +VA LIATV FAA F +PG Y  D +D P   + G A  +    
Sbjct: 339 NKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPE 398

Query: 273 FQSFVVSDAIAMVLSLSAVFVHFILS----------LKFFRKFIFLFVFALSFTLVAMAA 322
           F  FVV D+ A+ +SL+ V V   +           +    K +++    +S   V+++ 
Sbjct: 399 FLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSF 458

Query: 323 MIVAFVTGTYAVLAPSLGLAIVTCIIG 349
           ++V       AV   ++G  I+   +G
Sbjct: 459 VVVGEKEKPLAVGVTAIGALIMVSTLG 485

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 134/319 (42%), Gaps = 53/319 (16%)

Query: 12  LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMV 71
           L R  D    +PL+ A   D   I   +L+ D S A+I  ++ K T+LH A   G + +V
Sbjct: 120 LCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGK-TSLHTAGRYGLLRIV 178

Query: 72  QEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFH 131
           + +I+       V D +G   LH A+     R L+ + +   A   ++ ++D KGNT  H
Sbjct: 179 KALIEKDAAIVGVKDKKGQTALHMAV---KGRSLEVVEEILQADYTILNERDRKGNTALH 235

Query: 132 V--------------------LAAVCRQSYDA-------RYDIVPWKIAKAHFQATNKQN 164
           +                    + A+  Q   A       +Y     +I +A  +A  K  
Sbjct: 236 IATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHG 295

Query: 165 --ISAE---HIYRYGFPDLEQEIQ-ELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDE 218
             I  E      +    D++ E+Q +L + + + +   G+ K             + L  
Sbjct: 296 RFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKE-----------LRKLHR 344

Query: 219 DVIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVV 278
           + +  +  + S  VVA L A++ F A F LPG Y +   +  + G A ++    F+ F +
Sbjct: 345 EAV--QNTTNSITVVAVLFASIAFLAIFNLPGQYFT---EGSHVGQANIAGRTGFRVFCL 399

Query: 279 SDAIAMVLSLSAVFVHFIL 297
            +A ++ +SL+ V V   L
Sbjct: 400 LNATSLFISLAVVVVQITL 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XZC0|LCTA_LATTR Alpha-latrocrustotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=2 SV=2

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%)

Query: 20  GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP 79
            WTPLH A+   +  +++ LL+  ++  + +  D+ +T LHLAA  G+  +V+ I++   
Sbjct: 700 NWTPLHLAILFKKFDVAQSLLQV-RNIDISTRADQAITPLHLAAATGNSQIVKTILN--- 755

Query: 80  ECCEVVDD---RGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAV 136
               VVD     G+  LH A+++      + L+ K   +      K   G+TP H  AA+
Sbjct: 756 -SGAVVDQETANGFTALHLAIMNPNTETPQFLIAKGANIN----AKTNDGSTPLHFAAAL 810

Query: 137 CR 138
            +
Sbjct: 811 GK 812

Crustacean-selective presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q25338|LITD_LATTR Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 20/145 (13%)

Query: 3   LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
           L+ +  K S+    + + WTPLH+A+Y  +   +K LL+ D     I   D  +T LHLA
Sbjct: 690 LISIKDKVSINSVTENNNWTPLHFAIYFKKEDAAKELLKQDDINLTIV-ADGNLTVLHLA 748

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKK 122
              G + +++E++       E   + G+  LH A +            K P +  ++ + 
Sbjct: 749 VSTGQINIIKELLKRGSNIEEKTGE-GYTSLHIAAMR-----------KEPEIAVVLIEN 796

Query: 123 --DVKGN-----TPFHVLAAVCRQS 140
             D++       TP H  A + R+S
Sbjct: 797 GADIEARSADNLTPLHSAAKIGRKS 821

Insecticidal toxin that induces massive neurotransmitter release at insect but not vertebrate neuromuscular junctions. Forms cation-permeable pores (with high permeability to calcium) in lipid membranes locust muscle membrane and artificial lipid bilayers. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|P97570|PLPL9_RAT 85/88 kDa calcium-independent phospholipase A2 OS=Rattus norvegicus GN=Pla2g6 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 16  RDRHGWTPLHYAVYLD--RCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
           R+   WT  H AV L    CF    ++    S A  ++ +   T LHLA  +GD  ++ E
Sbjct: 115 RNHPSWTVTHLAVELGIRECFHHSRII----SCANSTENEEGCTPLHLACRKGDSEILVE 170

Query: 74  IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL 133
           ++ +C    +V D++G    H+A+     + L+ L     A  N +   + +G TP H+ 
Sbjct: 171 LVQYCHAQMDVTDNKGETAFHYAVQGDNPQVLQLLGKNASAGLNQV---NNQGLTPLHLA 227

Query: 134 AAVCRQ 139
             + +Q
Sbjct: 228 CQMGKQ 233

Catalyzes the release of fatty acids from phospholipids. It has been implicated in normal phospholipid remodeling, nitric oxide-induced or vasopressin-induced arachidonic acid release and in leukotriene and prostaglandin production. May participate in fas mediated apoptosis and in regulating transmembrane ion flux in glucose-stimulated B-cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|P97819|PLPL9_MOUSE 85/88 kDa calcium-independent phospholipase A2 OS=Mus musculus GN=Pla2g6 PE=1 SV=3

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 16  RDRHGWTPLHYAVYLD--RCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
           R+   WT  H AV L    CF    ++    S A  ++ +   T LHLA  +GD  ++ E
Sbjct: 115 RNHPSWTVTHLAVELGIRECFHHSRII----SCANSTENEEGCTPLHLACRKGDSEILVE 170

Query: 74  IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL 133
           ++ +C    +V D++G    H+A+     + L+ L     A  N +   + +G TP H+ 
Sbjct: 171 LVQYCHAQMDVTDNKGETAFHYAVQGDNPQVLQLLGKNASAGLNQV---NNQGLTPLHLA 227

Query: 134 AAVCRQ 139
             + +Q
Sbjct: 228 CKMGKQ 233

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 12/137 (8%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
           +LLDKK S    +  +G+TPLH A   +R  + + LL+   S   +++    +T +H+AA
Sbjct: 368 VLLDKKAS-PNAKALNGFTPLHIACKKNRIRVMELLLKHGASIQAVTESG--LTPIHVAA 424

Query: 64  GRGDVWMVQEIIDH--CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK 121
             G V +V +++ H   P    V   RG   LH A  S  A  +++LV     V      
Sbjct: 425 FMGHVNIVSQLMHHGASPNTTNV---RGETALHMAARSGQAEVVRYLVQDGAQVE----A 477

Query: 122 KDVKGNTPFHVLAAVCR 138
           K     TP H+ A + +
Sbjct: 478 KAKDDQTPLHISARLGK 494

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|O74205|TOXE_COCCA Transcription factor TOXE OS=Cochliobolus carbonum GN=TOXE PE=3 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 21/146 (14%)

Query: 2   PLLLLDKKKS---LTRERDRHG-----WTPLHYAVYLDRCFISKCLLEADKSAALISDED 53
           PLL  D K     +  E + HG     ++PL  A+ L R  I++ LL++   A L   +D
Sbjct: 264 PLLAADDKSPGDLVISEANTHGPKEDQFSPLMTAISLGRLDIARILLQS--GAPLDIPDD 321

Query: 54  RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYP 113
              TALH A GR ++ MV+ +++   E     D  G ++LH A+ +      + L+++Y 
Sbjct: 322 SGKTALHRAVGRRELHMVEALLNLGAEML-ATDHEGNSLLHIAVKTNSLSITRLLLERYK 380

Query: 114 AVRNLIFKKDVKGNTPFHVLAAVCRQ 139
           + R L   KD +       L   CRQ
Sbjct: 381 SCREL---KDAQ-------LGHGCRQ 396

A pathway-specific transcription factor which co-ordinates the expression of genes involved in HC-toxin biosynthesis. Binds to the tox-box, a 10-bp motif with the consensus 5'-ATCTCNCGNA-3', which is found in the promoter of all genes involved in HC-toxin biosynthesis. Required for pathogenicity of the fungus on maize.

Cochliobolus carbonum (taxid: 5017)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 1   VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALH 60
           V  +LLDKK +    +  +G+TPLH A   +R  + + LL+   S   +++    +T +H
Sbjct: 382 VAKVLLDKKAN-PNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESG--LTPIH 438

Query: 61  LAAGRGDVWMVQEIIDH--CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNL 118
           +AA  G V +V +++ H   P    V   RG   LH A  S  A  +++LV     V   
Sbjct: 439 VAAFMGHVNIVSQLMHHGASPNTTNV---RGETALHMAARSGQAEVVRYLVQDGAQVE-- 493

Query: 119 IFKKDVKGNTPFHVLA 134
              K     TP H+ A
Sbjct: 494 --AKAKDDQTPLHISA 507

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
224127106	575	predicted protein [Populus trichocarpa]	0.925	0.601	0.456	1e-76
255585399	575	ankyrin repeat-containing protein, putat	0.903	0.587	0.450	6e-76
224127102	434	predicted protein [Populus trichocarpa]	0.901	0.776	0.45	1e-73
224126975	381	predicted protein [Populus trichocarpa]	0.885	0.868	0.410	1e-59
298205151	1006	unnamed protein product [Vitis vinifera]	0.903	0.335	0.394	6e-57
359477893	617	PREDICTED: ankyrin repeat-containing pro	0.911	0.552	0.395	1e-56
296085927	611	unnamed protein product [Vitis vinifera]	0.901	0.551	0.396	1e-55
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.911	0.535	0.406	3e-54
147805307	603	hypothetical protein VITISV_007868 [Viti	0.930	0.577	0.389	9e-54
359478095	720	PREDICTED: ankyrin repeat-containing pro	0.852	0.443	0.397	8e-52

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 175/383 (45%), Positives = 241/383 (62%), Gaps = 37/383 (9%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLD--RCFISKCLLEADKSAALISDEDRKMTALHLA 62
           +L+K+K LT+  D +GW+PLHYA Y D     I + LLE D S A I++ ++K TALH+A
Sbjct: 213 MLEKEKKLTKTTDENGWSPLHYASYCDWSNAPIVEVLLEYDASTASIAETEKKRTALHIA 272

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKK 122
           A +G V  ++EI+  CP CC++VD+RGWN LH+A+ S   +  K  + K P +  L  +K
Sbjct: 273 AIQGHVDAMKEIVSRCPACCDLVDNRGWNALHYAVASKDTKVFKECL-KIPELARLQTEK 331

Query: 123 DVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQ--ATNKQNISAEHIYRYGFPDLEQ 180
           D KGNTPFH++AA+  +  + RY +         +Q    NK+ +S   IY   F ++++
Sbjct: 332 DDKGNTPFHLIAALAHEQPEWRYVLFNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQK 391

Query: 181 EIQELSKADGSG--QYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAALIA 238
           EI E     GSG       V++  +NK+           ED   + +A ESHLVVAALIA
Sbjct: 392 EILESLNDGGSGPLGRRRKVLRRGRNKE----------GED--ALSKARESHLVVAALIA 439

Query: 239 TVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILS 298
           TVTFAAAFTLPGGYKSD      +GTAIL+K AAF  FVVSDA++MVLS+SAVF+HF++S
Sbjct: 440 TVTFAAAFTLPGGYKSD------RGTAILAKKAAFIVFVVSDAMSMVLSISAVFIHFLIS 493

Query: 299 LKFFRKF-----------IFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCI 347
           L    +            I LF  A  FT++ M  MI+AF+TGTYAVL PSLGLAI +C+
Sbjct: 494 LIHAFEMEKSKDISEEAAIKLFGVATLFTMIGMGIMIIAFITGTYAVLEPSLGLAISSCL 553

Query: 348 IGLTFFLLVVFMFYKVRSKAVED 370
           IGL+FF  +V++ +++  K VED
Sbjct: 554 IGLSFF-FIVYLVFRIILKDVED 575

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 163/362 (45%), Positives = 233/362 (64%), Gaps = 24/362 (6%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAG 64
           +LDKK SL  + D  GWTPLHYA Y+    + K LL  DK  A  +D+ R+ TALHLAA 
Sbjct: 229 ILDKKTSLVNKADEMGWTPLHYAAYIGASRVVKQLLGYDKYVAYAADKARRRTALHLAAC 288

Query: 65  RGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDV 124
           + ++  ++EII  CP+CC++VD+RGWNV H+A++S     LK L+   P+   L+ +KD 
Sbjct: 289 QANIKSMREIIFKCPDCCKLVDNRGWNVAHYAVISKSDDALKILLAN-PSCIYLVNEKDA 347

Query: 125 KGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQE 184
           +GNTP H+LAA+        +       AK H  A  +QN           P  ++EIQE
Sbjct: 348 QGNTPLHLLAALQSHPRSLMHH------AKGHRFAVYRQNFLCIKELLSRSPCRKKEIQE 401

Query: 185 LSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAALIATVTFAA 244
             +  G G  P G + + K             D+ ++  + A +SH+VVAAL+ATVTFAA
Sbjct: 402 WMRDLGGG--PLGQIVIKK-------------DDFILTFERARDSHIVVAALVATVTFAA 446

Query: 245 AFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLKFFR- 303
           AFTLPGGY+S+ +D+ ++G AIL KN+AF++F+++DAIAMVLS S++F+HF L+L  +R 
Sbjct: 447 AFTLPGGYRSN-DDEKDQGVAILGKNSAFKAFLITDAIAMVLSTSSLFIHFTLALHGYRQ 505

Query: 304 KFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFMFYKV 363
           +F++L V+A    + A+ AM+VAFVTGTYAVL+PS GLAI TC IGL+FF+ V F+  ++
Sbjct: 506 RFMWLMVYAFRCIVFAIEAMVVAFVTGTYAVLSPSQGLAISTCAIGLSFFIFVFFILTRI 565

Query: 364 RS 365
            S
Sbjct: 566 NS 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127102|ref|XP_002329396.1| predicted protein [Populus trichocarpa] gi|222870446|gb|EEF07577.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 171/380 (45%), Positives = 230/380 (60%), Gaps = 43/380 (11%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCF-ISKCLLEADKSAALISDEDRKMTALHLAA 63
           LL+K+K LT+  D+ GW+PLHYA Y DR   I   LLE D SAA I++ ++K TALH+AA
Sbjct: 51  LLEKEKKLTKTTDQDGWSPLHYAAYYDRSTCIVHVLLENDASAAYIAETEKKRTALHIAA 110

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD 123
            +G V  ++EI+   P CCE+VD+RGWN LH+A V+   R++     + P +  L  KKD
Sbjct: 111 IQGHVNAMKEIVSRRPACCELVDNRGWNALHYA-VATKDREVFKECMEIPELARLKTKKD 169

Query: 124 VKGNTPFHVLAAVCRQSYDARYDIVPW----------KIAKAHFQATNKQNISAEHIYRY 173
            KGNTPFH++AA+  +    R  +  +             K      N+Q +S   IY  
Sbjct: 170 DKGNTPFHLIAALAHEKKQWRRVLYKYCYNKRVVCGKSPYKREVCGLNEQKLSVNDIYEG 229

Query: 174 GFPDLEQEIQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVV 233
            F ++++EI  L   +  G  P G  K+ K +           + +   +  A ESHLVV
Sbjct: 230 KFGEIQKEI--LKSLEDVGNGPLGSRKVLKGQN----------EGEKEALSRARESHLVV 277

Query: 234 AALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFV 293
           AALIATVTFAAAFTLPGGYK+D      +GTAIL+K AAF  FV+SDA++MVLS+ AVF+
Sbjct: 278 AALIATVTFAAAFTLPGGYKND------RGTAILAKKAAFIVFVISDAMSMVLSILAVFI 331

Query: 294 HFILSLKFFRKFI-----------FLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLA 342
           HF++SL    + +            LFV A  FT++ M  MI+AFVTGTYAVL PSL LA
Sbjct: 332 HFLISLIHGFEMVKDKVIDEDTTEILFVVATLFTMIGMGTMIIAFVTGTYAVLEPSLELA 391

Query: 343 IVTCIIGLTFFLL--VVFMF 360
           I TC+IGL+FF+L  +VF F
Sbjct: 392 ISTCLIGLSFFVLGNLVFAF 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126975|ref|XP_002329352.1| predicted protein [Populus trichocarpa] gi|222870402|gb|EEF07533.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 149/363 (41%), Positives = 205/363 (56%), Gaps = 32/363 (8%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAV---YLDRCFIS-KCLLEADKSAALISDEDRKMTALH 60
           +L +  SLTR  D  GW+PLHYA    YL     + K LLE D SAA I D +++ TALH
Sbjct: 11  ILKRNPSLTRRTDDDGWSPLHYAAFFPYLSHGVPTVKVLLEHDVSAAYIVDSEKR-TALH 69

Query: 61  LAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIF 120
           LA  RGDV  V+ I++ CP CCE+VD+RGWNVLH+A  +   +   +     P    L +
Sbjct: 70  LAVVRGDVAAVRAIMNPCPACCELVDNRGWNVLHYAATTI--KGYFYFPQWIPHFEKLKY 127

Query: 121 KKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQ 180
           +KD  GNTP H+ AA+   ++  +     W  A       NK+N+S + I    FP+ ++
Sbjct: 128 EKDNDGNTPLHLYAAL--GNFPQQRLSSDWIHAYKKMCGLNKRNLSVDDILGRNFPETKK 185

Query: 181 EIQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAALIATV 240
           EI E  K   SG     +  M K              E +   +   E+ ++VAAL+ATV
Sbjct: 186 EILESLKDVRSGPLQRPIAMMKK--------------EYLSISERGMETRVLVAALVATV 231

Query: 241 TFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLK 300
           TFAAAFT+PGGYK++      +G A+L KNAAF  FV+SDAIAM+LS+SA+F+HF  +  
Sbjct: 232 TFAAAFTMPGGYKNE------QGIAVLLKNAAFVVFVISDAIAMLLSISALFMHFCWAPI 285

Query: 301 FFRKFI---FLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVV 357
             R  +       +  + T+ A+ AM++AF+TG+YAVLAPS  LAI TC IG  F     
Sbjct: 286 GTRGQVEEDMKGNWTSTLTICAIPAMVIAFITGSYAVLAPSSWLAITTCFIGAAFIFFAS 345

Query: 358 FMF 360
             F
Sbjct: 346 TAF 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205151|emb|CBI17210.3| unnamed protein product [Vitis vinifera]

 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 219/370 (59%), Gaps = 32/370 (8%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVY--LDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
           +L+ K  LT+E D++GW+PLHYA     D   +   L +++KS A +  +D K TALH+A
Sbjct: 48  ILEWKPDLTKEVDKNGWSPLHYAAERGCDPEIVRLLLEKSEKSVAYLRSKDGKKTALHIA 107

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLK---HLVDKYPAVRNLI 119
           +      +V++I+ H P C E VDD+G N+ HFAM+     D     +  + +   R L+
Sbjct: 108 SFHHHTKIVEKILSHSPGCREQVDDKGNNIFHFAMMKEGDDDFNPSSYFFNYWLRSRGLV 167

Query: 120 FKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLE 179
            +K+ +GNTP H+L+    Q  D R+ +  +K+ K   +A N ++++A  I      D+ 
Sbjct: 168 NEKNAQGNTPIHLLS--LNQILDFRF-VWNYKVDK---KAYNNEDLTAYDIILRDKEDIS 221

Query: 180 QE---IQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAAL 236
           +E   IQ   +A  +G+      K  K ++I      ++  E +  +++  E+HL+V+AL
Sbjct: 222 EEKDRIQSWLEAVTTGRISSFWEKETKRQEIE-----QERKEYISQLQKQGETHLIVSAL 276

Query: 237 IATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFI 296
           I TVTFAA FTLPGGYK   EDD   G AILSK AAF++FVV+D IAMV SL AVF+HF+
Sbjct: 277 ITTVTFAAGFTLPGGYK---EDD---GQAILSKKAAFRAFVVTDTIAMVSSLCAVFLHFL 330

Query: 297 LSL----KFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTF 352
           ++L    KF  K +   ++A S T+V M AM +AF TG YAVL  S GL+++TCI+   F
Sbjct: 331 MTLHKRGKFLEKHL---LWAFSLTMVGMGAMAIAFATGLYAVLPHSSGLSVLTCILCSCF 387

Query: 353 FLLVVFMFYK 362
           FL +   + K
Sbjct: 388 FLSIAVEYCK 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477893|ref|XP_002271294.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 218/367 (59%), Gaps = 26/367 (7%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVY--LDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
           +L+ K  LT+E D++GW+PLHYA     D   +   L +++KS A +  +D K TALH+A
Sbjct: 256 ILEWKPDLTKEVDKNGWSPLHYAAERGCDPEIVRLLLEKSEKSVAYLRSKDGKKTALHIA 315

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLK---HLVDKYPAVRNLI 119
           +      +V++I+ H P C E VDD+G N+ HFAM+     D     +  + +   R L+
Sbjct: 316 SFHHHTKIVEKILSHSPGCREQVDDKGNNIFHFAMMKEGDDDFNPSSYFFNYWLRSRGLV 375

Query: 120 FKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLE 179
            +K+ +GNTP H+L+    Q  D R+ +  +K+ K   +A N ++++A  I      D+ 
Sbjct: 376 NEKNAQGNTPIHLLS--LNQILDFRF-VWNYKVDK---KAYNNEDLTAYDIILRDKEDIS 429

Query: 180 QE---IQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHLVVAAL 236
           +E   IQ   +A  +G+      K  K ++I      ++  E +  +++  E+HL+V+AL
Sbjct: 430 EEKDRIQSWLEAVTTGRISSFWEKETKRQEIE-----QERKEYISQLQKQGETHLIVSAL 484

Query: 237 IATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFI 296
           I TVTFAA FTLPGGYK   EDD   G AILSK AAF++FVV+D IAMV SL AVF+HF+
Sbjct: 485 ITTVTFAAGFTLPGGYK---EDD---GQAILSKKAAFRAFVVTDTIAMVSSLCAVFLHFL 538

Query: 297 LSLKFFRKFIFL-FVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLL 355
           ++L    KF+    ++A S T+V M AM +AF TG YAVL  S GL+++TCI+   FFL 
Sbjct: 539 MTLHKRGKFLEKHLLWAFSLTMVGMGAMAIAFATGLYAVLPHSSGLSVLTCILCSCFFLS 598

Query: 356 VVFMFYK 362
           +   + K
Sbjct: 599 IAVEYCK 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085927|emb|CBI31368.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/378 (39%), Positives = 218/378 (57%), Gaps = 41/378 (10%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLA 62
           LL+ K  LT+E D +GW+PLH A YL    I + LL+   DKS   +  +D K TALH+A
Sbjct: 249 LLEWKPDLTKEVDENGWSPLHCAAYLGHTAIVEQLLDKSPDKSVTYLGLKDSKKTALHIA 308

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS--FYARDLKHLVDKYPAVRNLIF 120
           A R    +V+ ++ H P+CCE VDD+G NVLH+A++S  F A       +   +VR LI 
Sbjct: 309 ANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRLIN 368

Query: 121 KKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIA--KAHFQATNKQNISAEHI-------- 170
           +KD KG+TP H+LA+   Q YD      P+  A  +    A NK  ++A  I        
Sbjct: 369 EKDAKGDTPLHLLASY--QVYD------PFLSADNRVDKMALNKDKLTALDIISRDKVKP 420

Query: 171 YRYGFPDLEQEIQELSK-ADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASES 229
            R    ++ ++ +E  K   G   + + + K + + K  +     + DE +   K   E+
Sbjct: 421 RRIFKEEIRRQWREWEKVVVGPFSWQEAINKDSGSSKSEDV----EKDESISTTKREGET 476

Query: 230 HLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLS 289
           HL+VAAL+ATVTFAA FTLPGGY        + G AIL+K AAF++F+V+D +A++LS+S
Sbjct: 477 HLIVAALVATVTFAAGFTLPGGYN-------DNGMAILTKRAAFKAFIVTDTMAVILSVS 529

Query: 290 AVFVHFILSLK----FFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVT 345
           AVFV+F +S+     +  K + +  F    T+++M AM+VAF+TG YAVL  S GL IVT
Sbjct: 530 AVFVYFFMSVHEDEDYLDKHLIMGFF---LTVLSMGAMVVAFMTGLYAVLPLSSGLPIVT 586

Query: 346 CIIGLTFFLLVVFMFYKV 363
           CII   F L   F+F ++
Sbjct: 587 CIICCIFLLAFYFVFRQL 604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 160/394 (40%), Positives = 217/394 (55%), Gaps = 53/394 (13%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLA 62
           LL+ K  LT+E D +GW+PLH A YL    I + LL+   DKS   +  +D K TALH+A
Sbjct: 264 LLEWKPDLTKEVDENGWSPLHCAAYLGYTAIVEQLLDKSPDKSVTYLGIKDSKKTALHIA 323

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS--FYARDLKHLVDKYPAVRNLIF 120
           A R    +V+ ++ H P+CCE VDD+G NVLH A++S  +YA       +    V  LI 
Sbjct: 324 ANRHHQDIVKRLLSHSPDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLWVTGLIN 383

Query: 121 KKDVKGNTPFHVLAAVCRQSYDA------RYDIVPWKIAK-AHFQATNKQNISAEHIYRY 173
           +KD KG+TP H+LA+   Q YD       R D +     K       ++ N+ + +I R 
Sbjct: 384 EKDAKGDTPLHLLASY--QVYDPFLSENNRVDKMALNKDKLTALDILSRANVKSGNISR- 440

Query: 174 GFPDLEQEIQELSKAD------------GSGQYPDGVVKMNKNKKIANYSFWKDLDEDVI 221
               L ++++E  K D             SG   +G    N      + S  KD+ ED I
Sbjct: 441 --EVLLKQLKEGEKVDVGPFSWQEAINKDSGSTGNGSADDN-----GSSSKSKDVGEDKI 493

Query: 222 --GMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVS 279
              +    E+HL+VAAL+ATVTFAA FTLPGGY SD       G A L+K AAF +F+V+
Sbjct: 494 ISNINRIGETHLIVAALVATVTFAAGFTLPGGYDSD-------GMATLTKKAAFIAFIVT 546

Query: 280 DAIAMVLSLSAVFVHFILSLK----FFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVL 335
           D IA+ LS+SAVFV+F +SL     F  K +F   +    T+  + AM+VAF+TG YAVL
Sbjct: 547 DTIAVTLSVSAVFVYFFMSLHEDEGFLEKHLFTGFY---LTVFGIGAMMVAFMTGLYAVL 603

Query: 336 APSLGLAIVTCIIGLTFFLLVVFMFYKVRSKAVE 369
             S GL IV CII  +FFLL    FY V  +AV+
Sbjct: 604 PLSSGLPIVACII-CSFFLLP---FYFVLRQAVK 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805307|emb|CAN73752.1| hypothetical protein VITISV_007868 [Vitis vinifera]

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 150/385 (38%), Positives = 217/385 (56%), Gaps = 37/385 (9%)

Query: 1   VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEA--DKSAALISDEDRKMTA 58
           + + LL  K SLT+E D HGW+PLH A +     I K LL    DK    +  +D K TA
Sbjct: 229 ITIKLLKWKPSLTKEVDEHGWSPLHCAAHFGYVKIVKQLLNKSLDKFPTYLRIKDGKKTA 288

Query: 59  LHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPA---- 114
           LH+AAGRG + +V+ ++ HCP+CCE VD +G NV HFAM            D YP     
Sbjct: 289 LHIAAGRGHIDIVKLLVQHCPDCCEQVDCKGQNVFHFAMAKKK--------DXYPGKFLE 340

Query: 115 -----VRNLIFKKD-VKGNTPFHVLAA--VCRQSYDARYDIVPWKIAKAHF-------QA 159
                +R L+ +KD VKG+TP H+LA+  V  + +   + +    +   +F       QA
Sbjct: 341 IDGLKLRGLVNEKDYVKGDTPLHLLASYLVDDEDFIVDHTVDKMGLNSEYFTPNDIVSQA 400

Query: 160 TNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDED 219
           T+   ++  +I  Y     E  +  LS   G  +  D     ++NK   + +  KD D+ 
Sbjct: 401 THNW-VNKSYILHYLRKSXEGAVGPLSWLLGIRE--DHGCSESENKD-EDRTRKKD-DKI 455

Query: 220 VIGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVS 279
              + + +E+HL+VAALI TVTFAA FT+PGGYK D +  P  GTA+L+K AAF++FVV+
Sbjct: 456 FFTLDKKAETHLIVAALITTVTFAAGFTVPGGYKEDKDSSP--GTAVLAKKAAFKAFVVT 513

Query: 280 DAIAMVLSLSAVFVHFILSLKFFRKFIF-LFVFALSFTLVAMAAMIVAFVTGTYAVLAPS 338
           D IAMVLS+S+VFV F++     ++ I    ++    T+ AM AM+VAF+TG YAVL  S
Sbjct: 514 DTIAMVLSISSVFVSFLMVYHKKQEIIGNXLLWGTLLTMFAMGAMVVAFMTGLYAVLPLS 573

Query: 339 LGLAIVTCIIGLTFFLLVVFMFYKV 363
            GL I  C+I   FF+   ++F ++
Sbjct: 574 SGLPIANCVICCIFFIFFCYLFRQI 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478095|ref|XP_002274107.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 143/360 (39%), Positives = 208/360 (57%), Gaps = 41/360 (11%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLA 62
           LL+ K  LT+E D +GW+PLH A YL    I + LL+   DKS   +  +D K TALH+A
Sbjct: 264 LLEWKPDLTKEVDENGWSPLHCAAYLGHTAIVEQLLDKSPDKSVTYLGLKDSKKTALHIA 323

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS--FYARDLKHLVDKYPAVRNLIF 120
           A R    +V+ ++ H P+CCE VDD+G NVLH+A++S  F A       +   +VR LI 
Sbjct: 324 ANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRLIN 383

Query: 121 KKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIA--KAHFQATNKQNISAEHI-------- 170
           +KD KG+TP H+LA+   Q YD      P+  A  +    A NK  ++A  I        
Sbjct: 384 EKDAKGDTPLHLLASY--QVYD------PFLSADNRVDKMALNKDKLTALDIISRDKVKP 435

Query: 171 YRYGFPDLEQEIQELSK-ADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASES 229
            R    ++ ++ +E  K   G   + + + K + + K  +     + DE +   K   E+
Sbjct: 436 RRIFKEEIRRQWREWEKVVVGPFSWQEAINKDSGSSKSEDV----EKDESISTTKREGET 491

Query: 230 HLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLS 289
           HL+VAAL+ATVTFAA FTLPGGY        + G AIL+K AAF++F+V+D +A++LS+S
Sbjct: 492 HLIVAALVATVTFAAGFTLPGGYN-------DNGMAILTKRAAFKAFIVTDTMAVILSVS 544

Query: 290 AVFVHFILSLK----FFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVT 345
           AVFV+F +S+     +  K + +  F    T+++M AM+VAF+TG YAVL  S GL IVT
Sbjct: 545 AVFVYFFMSVHEDEDYLDKHLIMGFF---LTVLSMGAMVVAFMTGLYAVLPLSSGLPIVT 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.414	0.223	0.296	4.4e-14
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.419	0.254	0.272	7.9e-14
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.334	0.184	0.305	1.1e-12
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.344	0.188	0.328	3.5e-11
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.352	0.197	0.298	4.2e-11
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.427	0.249	0.283	1.4e-10
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.334	0.188	0.325	4.4e-10
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.941	0.614	0.241	1e-09
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.927	0.571	0.239	8.8e-09
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.401	0.339	0.272	1.1e-08

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
 Identities = 51/172 (29%), Positives = 85/172 (49%)

Query:     4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKC-LLEADKSAALISDEDRKMTALHLA 62
             ++LD+  SL  ERD +GWT L  A ++   +   C LLE       + D+D     +H A
Sbjct:   309 VILDEYPSLMDERDINGWTCLSLAAHIGY-YEGVCNLLERSTKGVYVCDQDGSFP-IHTA 366

Query:    63 AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS--FYARDLKHLVDKYPAVRNLIF 120
             A +G   +V+E I  CP    +++  G NVLH A  +  F+  ++  +++K     +L  
Sbjct:   367 AEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNML-IINK--DTEHLGV 423

Query:   121 KKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH--FQATNKQNISAEHI 170
              +DV GNTP H+  AV    + +    + W +A++    +  NK  + A  I
Sbjct:   424 GQDVDGNTPLHL--AVMNWHFKS----ITW-LARSSKILKVRNKNGLRARDI 468

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
 Identities = 46/169 (27%), Positives = 91/169 (53%)

Query:     4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCF--ISKCLLEADKSAA---LISDEDRKMTA 58
             ++L +   L   R+  G T L Y   +  C+  I   L E DK+A+    ++D+D   T 
Sbjct:   233 IVLRQDPGLIELRNEEGRTCLSYGASMG-CYEGIRYILAEFDKAASSLCYVADDDG-FTP 290

Query:    59 LHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNL 118
             +H+AA  G V +++E + HCP+  E+++++  N+ H A ++  ++ +K+L+ K    + +
Sbjct:   291 IHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLL-KLDEGKRM 349

Query:   119 IFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISA 167
             + ++D+ GNTP H LA   +  Y    +++ W     + +A N +  +A
Sbjct:   350 MNEQDINGNTPLH-LAT--KHRYPIVVNMLTWNDG-INLRALNNEGFTA 394

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 40/131 (30%), Positives = 63/131 (48%)

Query:     5 LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKC-LLEADKSAALISDEDRKMTALHLAA 63
             +L +  SL   RD  G T L +   L   +   C LL+    +  +SD+D     +H+A 
Sbjct:   302 ILSEDASLINFRDE-GRTCLSFGASLGY-YEGFCYLLDKALDSVYVSDDDGSFP-IHMAV 358

Query:    64 GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVD--KYPAVRNLIFK 121
               G V +++ I+  CP+  E++D    NVLH A  +     LK ++   K      LI +
Sbjct:   359 KYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLINE 418

Query:   122 KDVKGNTPFHV 132
             +D  GNTP H+
Sbjct:   419 EDANGNTPLHL 429

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
 Identities = 44/134 (32%), Positives = 69/134 (51%)

Query:     4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKC-LLEADKSAALISDEDRKMTALHLA 62
             ++L++  SL  ERD  G T L +   +       C LL   +    + D+D     +HLA
Sbjct:   288 VILNEYPSLVDERDEEGRTCLSFGASIGY-HKGVCNLLNRSRKGVFVCDDDGSYP-IHLA 345

Query:    63 AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKK 122
               +G + +V+EI   CP    +++ +G N+LH A  S   R L+HL   +  + +L  +K
Sbjct:   346 VEKGRIKVVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHLT-AHEQINHLANEK 404

Query:   123 DVKGNTPFHVLAAV 136
             DV GNTP H LA +
Sbjct:   405 DVDGNTPLH-LATI 417

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
 Identities = 43/144 (29%), Positives = 66/144 (45%)

Query:     4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKC-LLEADKSAALISDEDRKMTALHLA 62
             ++LD+  SL  E+D  G T L Y   +   +   C +L        + D+D     +H A
Sbjct:   280 VILDEYPSLMDEQDEDGRTCLSYGASIGY-YKGLCNILNRSTKGVYVCDQDGSFP-IHSA 337

Query:    63 AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAM---VSFYARDLKHLVDKYPAVRNLI 119
             A      +++E I  CP    +++  G N+LH A     S  A  L H  DK    ++L 
Sbjct:   338 AKNEHYEIIKEFIKRCPASKYLLNRLGQNILHVAAKNEASLTAYMLMH--DK--DTKHLG 393

Query:   120 FKKDVKGNTPFHVLAAVCRQSYDA 143
               +DV GNTP H+  AV    +D+
Sbjct:   394 VGQDVDGNTPLHL--AVMNWDFDS 415

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 47/166 (28%), Positives = 75/166 (45%)

Query:     4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
             ++L +  SL  ERD  G T L  A Y+        LL    S     D+D     +H+A 
Sbjct:   241 VILSEDPSLVNERDEEGRTCLSVAAYVGYYKGVVNLLHRSTSNVFECDDDGSYP-IHMAV 299

Query:    64 GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD-LKHLVDKYPAVRN-LIFK 121
              +G V +  +++  CP+   +++ +G N+LH A  S      L  ++  Y  ++N LI +
Sbjct:   300 EKGRVKIFLKLLKCCPDSQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIME 359

Query:   122 KDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISA 167
             +DV GNTP H+     R       +I+       H    NK  +SA
Sbjct:   360 QDVDGNTPLHLATLTWRPR---TVNILNKFTLGNHLHIRNKDGLSA 402

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
 Identities = 42/129 (32%), Positives = 59/129 (45%)

Query:     4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
             +LL+   +L    D    T LH A       +   LLE D + A I+  + K TALH AA
Sbjct:   242 ILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGK-TALHSAA 300

Query:    64 GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD 123
               G V +V+ +I   P      D +G   LH A+       +  LV    AV ++   +D
Sbjct:   301 RMGHVEVVKSLIGKDPSIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSV---ED 357

Query:   124 VKGNTPFHV 132
              KGNTP H+
Sbjct:   358 NKGNTPLHI 366

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 90/372 (24%), Positives = 151/372 (40%)

Query:     5 LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAG 64
             +L++   L    D    TPLH+A   +   I+K LLE D+S A   ++D   T LHLAA 
Sbjct:   169 MLERFPKLAWNADGELSTPLHHACNANNLEITKMLLEIDESLAERVNKDG-FTPLHLAAM 227

Query:    65 RGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLK-HLVDKYPAVRNLIFKKD 123
             +  + +++E  D  P   +++      V H A  + +   L  + + + P   NL+ + D
Sbjct:   228 KCSIPILKEFSDKAPRYFDILTPAKETVFHLA--AEHKNILAFYFMAESPDRNNLLHQVD 285

Query:   124 VKGNTPFH--VLAAVCRQSYDARYDIVPWKIAKAH--FQATNKQNISAEH---IYRYGFP 176
               GNT  H  V+++         Y+      AK +   +A +  N+  E    I R+   
Sbjct:   286 RYGNTVLHTAVMSSCYSVIVSITYETTIDLSAKNNRGLKAVDLINVDDEDYSKISRWLRF 345

Query:   177 DLEQEIQELSKADGS-GQYPDGVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHXXXXX 235
             D +Q I+ LS  +   G    GV+   K  +I      ++       +  A  +      
Sbjct:   346 DAKQ-IRSLSDPNHQQGNKNMGVLSEYKKMQIFETPSKRESKMHAEALLNARNTITIVAV 404

Query:   236 XXXXXXXXXXXXXPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHX 295
                          PGG     ++ P KG +   +  AFQ F +S+ IA+  SL  V +  
Sbjct:   405 LIASVAFTCGINPPGGVY---QEGPYKGKSTAGRTLAFQVFSISNNIALFTSLCIVILLV 461

Query:   296 XXXXXXXXXXXXXXXXXXSFTLVAMAAMIVAFVTGTYAVLAPSLGLA-IVTCIIGL-TFF 353
                                   VA+A+M +A+V+    ++    G   + T ++ + T  
Sbjct:   462 SIIPYRTRPLKNFLKLTHRILWVAVASMALAYVSAASIIIPHVEGKRWLFTTVLSISTLM 521

Query:   354 L--LVVFMFYKV 363
             L  L  FM YKV
Sbjct:   522 LGGLFAFMTYKV 533

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 93/389 (23%), Positives = 163/389 (41%)

Query:     4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
             LLL+ +  L++   +   TPL  A       +   LL  D S   IS  + K  ALHLAA
Sbjct:   196 LLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGK-NALHLAA 254

Query:    64 GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD 123
              +G V +V+ ++D  P+     D +G   LH A+    ++ ++ L+   PA+   +   D
Sbjct:   255 RQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAI---VMLPD 311

Query:   124 VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQ--E 181
               GNT  H+  A  ++  +   +++  ++   +  A  + + +A  I   G    E+  E
Sbjct:   312 KFGNTVLHI--ATRKKRAEIVNELL--QLPDTNVNALTRDHKTAYDIAE-GLTHSEETAE 366

Query:   182 IQE-LS-----KADGSGQYPDGVVK-MNKNKKIANYSFW------KDLD---EDV----- 220
             I+E LS     KA+   Q  D + K + + KK  +          K++D   +++     
Sbjct:   367 IKEILSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHR 426

Query:   221 IGMKEASESHXXXXXXXXXXXXXXXXXXPGGYKSDTEDDPNKGTAILSKNAAFQSFVVSD 280
              G+  A+ S                   PGG     +DD   G A++    +F+ F + +
Sbjct:   427 AGINNATNSVTVVAVLFATVAFAAIFTVPGG-----DDD--HGVAVMVHATSFKIFFIFN 479

Query:   281 AIAMVLSLSAVFVHXXXXXXXXXXXXXXXXXXXSFTLVAMAAMIVAFVTGTYAVLAP-SL 339
             AIA+  SL+ V V                        +A     VAF++ +Y V+   + 
Sbjct:   480 AIALFTSLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVVGRRNR 539

Query:   340 GLAIVTCIIGLTFF--LLVVFMFYKVRSK 366
               A+V  +IG      +L +  +Y V+SK
Sbjct:   540 YAAVVVTVIGTVTMTGILSIMTYYVVKSK 568

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 42/154 (27%), Positives = 72/154 (46%)

Query:    17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
             D++G++PLH A    +    +  L  +K    + D D K T LH+A  RG + +++EI+ 
Sbjct:    44 DKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGK-TPLHVATMRGKIDVIREIVA 102

Query:    77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVR--NLIFKKDVKGNTPFHVLA 134
              C +C E    +G   LH A++      +  +V+        +++ KKD +GNT  H+  
Sbjct:   103 SCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKKDEQGNTALHLAT 162

Query:   135 -AVCRQSYDARYDIVPWKIAKAHFQATNKQNISA 167
                 RQ  +     +P +       A NK  +SA
Sbjct:   163 WRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSA 196

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-34
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-04
cd09322	289	cd09322, TDT_TehA_like, The Tellurite-resistance/D	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  123 bits (311), Expect = 1e-34
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 222 GMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKN-AAFQSFVVSD 280
            +++   S LVVA LIATVTFAA FT PGGY  D     + GT IL+     F++F VS+
Sbjct: 3   WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDD-GGHHAGTPILAGKPRRFKAFFVSN 61

Query: 281 AIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAV 334
            IA V SL AV +  +  +  F + +   +  L+   +++ +++VAF  G+Y V
Sbjct: 62  TIAFVASLVAVIL-LLYIVPSFSRRLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.2 bits (180), Expect = 7e-16
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
            RD  G TPLH A       + K LLE         ++ R  T LHLAA  G + +V+ +
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR--TPLHLAAKNGHLEIVKLL 59

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
           ++         D  G   LH A  +     +K L+         +  +D  G TP H+
Sbjct: 60  LEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKH----GADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
           LLL+    +   +D  G TPLH A       I K LLE          +    T LHLAA
Sbjct: 25  LLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGN--TPLHLAA 81

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAM 97
             G++ +V+ ++ H  +     D  G   LH A 
Sbjct: 82  RNGNLDVVKLLLKHGADVNA-RDKDGRTPLHLAA 114

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLA 62
           LLL+K   +   RD+ G TPLH A       + K LL+     A ++  D+   T LHLA
Sbjct: 58  LLLEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHG---ADVNARDKDGRTPLHLA 113

Query: 63  AGRGDVWMVQEII 75
           A  G + +V+ ++
Sbjct: 114 AKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 24  LHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCE 83
           LH A       + K LLE         +     TALHLAA  G++ +V+ +++H  +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV----NLGDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 84  VVDDRGWNVLHFAMVSFYARDLKHLVDKYP 113
             D  G   LH A  +     +K L++   
Sbjct: 57  -KDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 15  ERDRHGWTPLHYAVY-----LDRCFISKCLLEADKSAALISDEDRKM-TALHLAAGRGDV 68
            +D  G TPLH A            ++K LLEA     + +  D    T LH AA  GD 
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160

Query: 69  WMVQEIIDHCPECCEVVDDRGWNVLHFAM-------VSFYARDLKHLV----DKYPAVRN 117
            +V+ +++   +     +  G   L  A        V        HL     +       
Sbjct: 161 DIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANA 219

Query: 118 LIFKKDVKGNTPFH 131
            + K+++   T   
Sbjct: 220 NVSKRNILNLTSLI 233

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 39 LLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96
          LLE        +D +   T LHLAA  G + +VQ ++        + D  G   L  A
Sbjct: 1  LLEHGPIDLNATDGNG-NTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 4  LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
          LLL+K   +         T LH A       I K LLE    A + + +    TALHLAA
Sbjct: 15 LLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHG--ADVNAKDKDGNTALHLAA 69

Query: 64 GRGDVWMVQEIIDHCPECC 82
            G++ +V+ +++H  +  
Sbjct: 70 RNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
            LLD  K       + G TPLH A  L +  I K L+ A  +   I + D+  + LHLA 
Sbjct: 86  ELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLI-ARGADPDIPNTDK-FSPLHLAV 143

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAM 97
             GD+  ++ +IDH   C ++ D  G   L  AM
Sbjct: 144 MMGDIKGIELLIDH-KACLDIEDCCGCTPLIIAM 176

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 3   LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
           LLL          RD  G  PLH A       I K LL +         +    T LHLA
Sbjct: 56  LLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDAD--GDTPLHLA 113

Query: 63  AGRGDVW-----MVQEIIDH--CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAV 115
           A  G+       + + +++     +   + D+ G   LH+A ++  A  ++ L++     
Sbjct: 114 ALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP 173

Query: 116 RNLIFKKDVKGNTPFH 131
            +    ++  G T   
Sbjct: 174 NS----RNSYGVTALD 185

Length = 235

>gnl|CDD|187762 cd09322, TDT_TehA_like, The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes TehA proteins

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 14/107 (13%)

Query: 263 GTAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLF----------VFA 312
           G  +    A      +   +  +L + A+ +  +L LK+  K +             V A
Sbjct: 10  GLGLAWLGAL-LLLGLPSIVGEILGILALLLWLLLLLKYLLKLLRYPEAVKAELRHPVRA 68

Query: 313 LSFTLVAMAAMIVAFVTGTYAVLAPSLGLAIVTCIIGLTFFLLVVFM 359
             F   +M+ M+++     Y   +P L   +      L     + F+
Sbjct: 69  SFFATFSMSLMLLSIYLLPY---SPLLARVLWILGAVLHLVFTLYFV 112

The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes members from all three kingdoms, but only three members of the family have been functionally characterized: the TehA protein of E. coli functioning as a tellurite-resistance uptake permease, the Mae1 protein of S. pombe functioning in the uptake of malate and other dicarboxylates, and the sulfite efflux pump (SSU1) of Saccharomyces cerevisiae. In plants, the plasma membrane protein SLAC1 (Slow Anion Channel-Associated 1), which is preferentially expressed in guard cells, encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. SLAC1 is essential in mediating stomatal responses to physiological and stress stimuli. Members of the TDT family exhibit 10 putative transmembrane a-helical spanners (TMSs). Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PF13962	113	PGG: Domain of unknown function	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02874	434	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02878	477	ankyrin repeat protein; Provisional	99.93
PHA03100	480	ankyrin repeat protein; Provisional	99.93
PHA02878	477	ankyrin repeat protein; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.92
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.92
PHA03100	480	ankyrin repeat protein; Provisional	99.92
PHA02798	489	ankyrin-like protein; Provisional	99.92
KOG0510	929	consensus Ankyrin repeat protein [General function	99.92
PHA02946	446	ankyin-like protein; Provisional	99.92
KOG0510	929	consensus Ankyrin repeat protein [General function	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.91
PHA02876	682	ankyrin repeat protein; Provisional	99.91
PHA03095	471	ankyrin-like protein; Provisional	99.91
PHA03095	471	ankyrin-like protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02876	682	ankyrin repeat protein; Provisional	99.91
PHA02798	489	ankyrin-like protein; Provisional	99.9
PHA02917	661	ankyrin-like protein; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0508	615	consensus Ankyrin repeat protein [General function	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.86
PHA02917	661	ankyrin-like protein; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
KOG0508	615	consensus Ankyrin repeat protein [General function	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
PHA02795	437	ankyrin-like protein; Provisional	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.81
PHA02730	672	ankyrin-like protein; Provisional	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
PHA02730	672	ankyrin-like protein; Provisional	99.79
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.78
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.77
PHA02792	631	ankyrin-like protein; Provisional	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
KOG0514	452	consensus Ankyrin repeat protein [General function	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.72
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.71
PHA02884	300	ankyrin repeat protein; Provisional	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.7
PHA02792	631	ankyrin-like protein; Provisional	99.68
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.59
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.43
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.36
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.33
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.33
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.31
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.3
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.3
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.24
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.23
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.07
PF13606	30	Ank_3: Ankyrin repeat	98.73
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.71
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.65
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.64
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.63
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.6
PF13606	30	Ank_3: Ankyrin repeat	98.57
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.52
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.51
KOG0522	560	consensus Ankyrin repeat protein [General function	98.51
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.42
KOG0522	560	consensus Ankyrin repeat protein [General function	98.39
KOG2384	223	consensus Major histocompatibility complex protein	98.24
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.24
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.13
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.13
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.06
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.94
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.92
KOG0511	516	consensus Ankyrin repeat protein [General function	97.85
KOG2384	223	consensus Major histocompatibility complex protein	97.84
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.58
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.54
KOG0511	516	consensus Ankyrin repeat protein [General function	97.12
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.88
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.64
KOG2505	591	consensus Ankyrin repeat protein [General function	95.82
KOG2505	591	consensus Ankyrin repeat protein [General function	95.58
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	84.81
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	83.32

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-33  Score=227.37  Aligned_cols=164  Identities=26%  Similarity=0.302  Sum_probs=145.6

Q ss_pred             hHHHHhhCCccccccCC-CCCcHHHHHHHcCCHHHHHHHhh-cCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHh-C
Q 041107            2 PLLLLDKKKSLTRERDR-HGWTPLHYAVYLDRCFISKCLLE-ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH-C   78 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~-~   78 (374)
                      +.++++..|.-++.+|. +|+||||+||+.|+.++|++|++ .+..+ +.+|. .||||||+||..|+.++|+.|+.+ +
T Consensus        19 veel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDd-aGWtPlhia~s~g~~evVk~Ll~r~~   96 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDD-AGWTPLHIAASNGNDEVVKELLNRSG   96 (226)
T ss_pred             HHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCC-CCccc-cCCchhhhhhhcCcHHHHHHHhcCCC
Confidence            45777888855555555 99999999999999999999995 55555 77888 999999999999999999999999 8


Q ss_pred             CCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccc
Q 041107           79 PECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQ  158 (374)
Q Consensus        79 ~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~  158 (374)
                      +++ +..+..|+|+||+|+..|+.++.++|+    +.|+.++.+|..|.||||-|+..|+...+..|     +..|+.+|
T Consensus        97 adv-na~tn~G~T~LHyAagK~r~eIaqlLl----e~ga~i~~kD~~~qtplHRAAavGklkvie~L-----i~~~a~~n  166 (226)
T KOG4412|consen   97 ADV-NATTNGGQTCLHYAAGKGRLEIAQLLL----EKGALIRIKDKQGQTPLHRAAAVGKLKVIEYL-----ISQGAPLN  166 (226)
T ss_pred             CCc-ceecCCCcceehhhhcCChhhHHHHHH----hcCCCCcccccccCchhHHHHhccchhhHHHH-----HhcCCCCC
Confidence            886 899999999999999999999999999    88899999999999999999999997777765     78899999


Q ss_pred             cccCCCCChHHHH-HhCCCc
Q 041107          159 ATNKQNISAEHIY-RYGFPD  177 (374)
Q Consensus       159 ~~n~~g~t~l~~a-~~~~~~  177 (374)
                      .+|+.|+||||.| +.++.+
T Consensus       167 ~qDk~G~TpL~~al~e~~~d  186 (226)
T KOG4412|consen  167 TQDKYGFTPLHHALAEGHPD  186 (226)
T ss_pred             cccccCccHHHHHHhccCch
Confidence            9999999999998 444444

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.9e-32  Score=218.64  Aligned_cols=160  Identities=24%  Similarity=0.281  Sum_probs=144.1

Q ss_pred             ChHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhc-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCC
Q 041107            1 VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEA-DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP   79 (374)
Q Consensus         1 i~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   79 (374)
                      |+..||..-+..+|.+|..||||||+||..|+.|+|+.|+.+ |+++ +..++ .|+||||||+..|..+++++|++.|+
T Consensus        53 iv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn-~G~T~LHyAagK~r~eIaqlLle~ga  130 (226)
T KOG4412|consen   53 IVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTN-GGQTCLHYAAGKGRLEIAQLLLEKGA  130 (226)
T ss_pred             HHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecC-CCcceehhhhcCChhhHHHHHHhcCC
Confidence            355666666677889999999999999999999999999998 9999 99998 99999999999999999999999998


Q ss_pred             CccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccc
Q 041107           80 ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQA  159 (374)
Q Consensus        80 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~  159 (374)
                      .+ ..+|+.|+||||.|+..|..+++++|+    ..|+.+|.+|..|+||||.|...|+.+... + |   ..+|++.+.
T Consensus       131 ~i-~~kD~~~qtplHRAAavGklkvie~Li----~~~a~~n~qDk~G~TpL~~al~e~~~d~a~-l-L---V~~gAd~~~  200 (226)
T KOG4412|consen  131 LI-RIKDKQGQTPLHRAAAVGKLKVIEYLI----SQGAPLNTQDKYGFTPLHHALAEGHPDVAV-L-L---VRAGADTDR  200 (226)
T ss_pred             CC-cccccccCchhHHHHhccchhhHHHHH----hcCCCCCcccccCccHHHHHHhccCchHHH-H-H---HHhccceee
Confidence            75 999999999999999999999999999    788999999999999999997667654443 4 4   899999999


Q ss_pred             ccCCCCChHHHHHh
Q 041107          160 TNKQNISAEHIYRY  173 (374)
Q Consensus       160 ~n~~g~t~l~~a~~  173 (374)
                      .|++| ||+.++..
T Consensus       201 edke~-t~~~~a~~  213 (226)
T KOG4412|consen  201 EDKEG-TALRIACN  213 (226)
T ss_pred             ccccC-chHHHHHH
Confidence            99999 99888743

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.7e-28  Score=233.02  Aligned_cols=179  Identities=21%  Similarity=0.153  Sum_probs=156.8

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++++++..+..++..|++|.|+||+||..++.+++++|+++|+++ +..+..-+.||||+|+++|+..++++|+++|+++
T Consensus        60 v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp  138 (600)
T KOG0509|consen   60 VKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP  138 (600)
T ss_pred             HHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC
Confidence            567888878999999999999999999999999999999999999 7777448999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                       +.+|.+|.||||+|++.++.-++-+++    ..++++|.+|.+|+||||+|+.+|+...+..|     +.-|+.++..|
T Consensus       139 -t~~D~~G~~~lHla~~~~~~~~vayll----~~~~d~d~~D~~grTpLmwAaykg~~~~v~~L-----L~f~a~~~~~d  208 (600)
T KOG0509|consen  139 -TLKDKQGLTPLHLAAQFGHTALVAYLL----SKGADIDLRDNNGRTPLMWAAYKGFALFVRRL-----LKFGASLLLTD  208 (600)
T ss_pred             -ceecCCCCcHHHHHHHhCchHHHHHHH----HhcccCCCcCCCCCCHHHHHHHhcccHHHHHH-----HHhcccccccc
Confidence             999999999999999999999999998    77799999999999999999999986555444     78899999988


Q ss_pred             -CCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          162 -KQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       162 -~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                       ++|.||||+|..++..   ..+..+.+.++...
T Consensus       209 ~~~g~TpLHwa~~~gN~---~~v~Ll~~g~~~~d  239 (600)
T KOG0509|consen  209 DNHGNTPLHWAVVGGNL---TAVKLLLEGGADLD  239 (600)
T ss_pred             cccCCchHHHHHhcCCc---ceEehhhhcCCccc
Confidence             9999999998776665   22334455544443

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=2.3e-27  Score=186.26  Aligned_cols=110  Identities=43%  Similarity=0.634  Sum_probs=96.0

Q ss_pred             HhHHhhhhhHHHHHHHHHHhhhhhcccCCCCccCCCCCCCCCccccccCCc-cchhhhhhchHHHHHHHHHHHHHHHhhh
Q 041107          221 IGMKEASESHLVVAALIATVTFAAAFTLPGGYKSDTEDDPNKGTAILSKNA-AFQSFVVSDAIAMVLSLSAVFVHFILSL  299 (374)
Q Consensus       221 ~~~~~~~~s~~vvA~LIATvtFaa~~t~PGg~~~~~~~~~~~G~~~l~~~~-~F~~F~~~n~~a~~~S~~~~~~~~~~~~  299 (374)
                      ||++++++++++||+|||||||+|+++||||++||++   +.|+|++.+++ .|+.|+++|++||++|++++++++ ..+
T Consensus         2 ~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~---~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~-~~~   77 (113)
T PF13962_consen    2 KWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD---DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI-SGL   77 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc---CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH-HHh
Confidence            7999999999999999999999999999999999642   56999999888 999999999999999999999977 433


Q ss_pred             hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 041107          300 KF-FRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAV  334 (374)
Q Consensus       300 ~~-~~~~~~~~~~~~~~l~~s~~~m~~af~~~~~~v  334 (374)
                      .+ .+.....+.++..++++++.+|++||++|+|+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            22 233445566889999999999999999999975

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.6e-26  Score=210.13  Aligned_cols=157  Identities=14%  Similarity=-0.034  Sum_probs=91.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC-CcHHHHHHH
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG-WNVLHFAMV   98 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~   98 (374)
                      |+||||+|+..|+.++++.|+++|+++ +.+|. .|+||||+|+..|+.++++.|++.++++ +.++..| .||||+|+.
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~  137 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDD-SQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVM  137 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHH
Confidence            455555555555555555555555555 55555 5666666666666666666666666554 4444444 356666666


Q ss_pred             hccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCCh-HHHHHhCCC
Q 041107           99 SFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISA-EHIYRYGFP  176 (374)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~-l~~a~~~~~  176 (374)
                      .|+.+++++|++    .+.  +..| ..|+||||+|++.|+.++++.|     ++.|++++..|..|.|| +|+|...+.
T Consensus       138 ~g~~eivk~LL~----~~~--~~~d~~~g~TpLh~Aa~~g~~eiv~lL-----L~~gAd~n~~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        138 LNDVSIVSYFLS----EIP--STFDLAILLSCIHITIKNGHVDMMILL-----LDYMTSTNTNNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             cCCHHHHHHHHh----cCC--cccccccCccHHHHHHHcCCHHHHHHH-----HHCCCCCCcccCCCCChHHHHHHHcCC
Confidence            666666666652    111  1122 2366777777776665555544     56677777777777765 677666665


Q ss_pred             ccHHHHHHHHHhcCCCC
Q 041107          177 DLEQEIQELSKADGSGQ  193 (374)
Q Consensus       177 ~~~~~i~~~l~~~~~~~  193 (374)
                      .   ++++.|.+.|+..
T Consensus       207 ~---e~v~lLl~~Ga~i  220 (284)
T PHA02791        207 L---EMLQALFKYDINI  220 (284)
T ss_pred             H---HHHHHHHHCCCCC
Confidence            5   5666666655544

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.5e-26  Score=224.11  Aligned_cols=178  Identities=18%  Similarity=0.058  Sum_probs=155.9

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++ .+.+++.++.+|.||||+|+..|+.+++++|+++|+++ +..+. ++.||||+|+..|+.++++.|++.+++.
T Consensus        18 v~~Ll~-~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~~~~~   94 (413)
T PHA02875         18 ARRLLD-IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYP-DIESELHDAVEEGDVKAVEELLDLGKFA   94 (413)
T ss_pred             HHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCC-CcccHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            455555 56778899999999999999999999999999999987 77777 8999999999999999999999999887


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                      ....+.+|+||||+|+..++.+++++|+    +.|++++.+|.+|+||||+|+..|+.+.++.|     ++.|++++.+|
T Consensus        95 ~~~~~~~g~tpL~~A~~~~~~~iv~~Ll----~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L-----l~~g~~~~~~d  165 (413)
T PHA02875         95 DDVFYKDGMTPLHLATILKKLDIMKLLI----ARGADPDIPNTDKFSPLHLAVMMGDIKGIELL-----IDHKACLDIED  165 (413)
T ss_pred             cccccCCCCCHHHHHHHhCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HhcCCCCCCCC
Confidence            6677888999999999999999999998    78899999999999999999999887777655     78899999999


Q ss_pred             CCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      ..|.||+|+|...+..   ++.++|.+.|+...
T Consensus       166 ~~g~TpL~~A~~~g~~---eiv~~Ll~~ga~~n  195 (413)
T PHA02875        166 CCGCTPLIIAMAKGDI---AICKMLLDSGANID  195 (413)
T ss_pred             CCCCCHHHHHHHcCCH---HHHHHHHhCCCCCC
Confidence            9999999999877765   77788888776543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=1e-26  Score=221.07  Aligned_cols=160  Identities=21%  Similarity=0.248  Sum_probs=145.7

Q ss_pred             hHHHHhhCCccccccC-CCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107            2 PLLLLDKKKSLTRERD-RHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE   80 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   80 (374)
                      ++.|+++ ++++|..+ .-|.||||+||++|+..+|.+|+++|+++ ..+|. +|.+|||.|+..|+.-.+-+|+.++.+
T Consensus        94 ~r~li~~-gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~-~G~~~lHla~~~~~~~~vayll~~~~d  170 (600)
T KOG0509|consen   94 ARYLISH-GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDK-QGLTPLHLAAQFGHTALVAYLLSKGAD  170 (600)
T ss_pred             HHHHHHc-CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecC-CCCcHHHHHHHhCchHHHHHHHHhccc
Confidence            4555555 57789888 56999999999999999999999999999 99999 999999999999999999999999988


Q ss_pred             ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeecccccccccccc
Q 041107           81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQA  159 (374)
Q Consensus        81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~  159 (374)
                      . +.+|.+|+||||+|+.+|....++.|+    ..++.++.+| .+|+||||+|+..|+...+. + +   ++.|.+.+.
T Consensus       171 ~-d~~D~~grTpLmwAaykg~~~~v~~LL----~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-L-l---~~g~~~~d~  240 (600)
T KOG0509|consen  171 I-DLRDNNGRTPLMWAAYKGFALFVRRLL----KFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-L-L---LEGGADLDK  240 (600)
T ss_pred             C-CCcCCCCCCHHHHHHHhcccHHHHHHH----HhcccccccccccCCchHHHHHhcCCcceEe-h-h---hhcCCcccc
Confidence            6 999999999999999999988787777    8889999888 99999999999999987777 6 6   888999999


Q ss_pred             ccCCCCChHHHHHhC
Q 041107          160 TNKQNISAEHIYRYG  174 (374)
Q Consensus       160 ~n~~g~t~l~~a~~~  174 (374)
                      .|.+|+||+++|.+.
T Consensus       241 ~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  241 TNTNGKTPFDLAQER  255 (600)
T ss_pred             cccCCCCHHHHHHHh
Confidence            999999999999654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.9e-26  Score=209.55  Aligned_cols=154  Identities=14%  Similarity=0.020  Sum_probs=135.9

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCC-chHHHHHHHcCCHHHHHHHHHhCCC
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQEIIDHCPE   80 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~   80 (374)
                      ++.|+ ..+..++.+|..|+||||+|+..|+.++++.|+++|+++ +.++. .| .||||+|+..|+.+++++|++++++
T Consensus        77 V~lLL-~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~-~g~~TpL~~Aa~~g~~eivk~LL~~~~~  153 (284)
T PHA02791         77 VKILL-FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPS  153 (284)
T ss_pred             HHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCC-CCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence            34444 467889999999999999999999999999999999999 77887 77 5999999999999999999999876


Q ss_pred             cccccc-CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcH-HHHHHhhccccccceeeeccccccccccc
Q 041107           81 CCEVVD-DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTP-FHVLAAVCRQSYDARYDIVPWKIAKAHFQ  158 (374)
Q Consensus        81 ~~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~-LH~A~~~g~~~~~~~l~L~~~l~~g~~~~  158 (374)
                      ..   | ..|+||||+|+++|+.+++++|+    +.|+++|.+|..|.|| ||+|+..|+.+.++.|     ++.|+++|
T Consensus       154 ~~---d~~~g~TpLh~Aa~~g~~eiv~lLL----~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lL-----l~~Ga~in  221 (284)
T PHA02791        154 TF---DLAILLSCIHITIKNGHVDMMILLL----DYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQAL-----FKYDINIY  221 (284)
T ss_pred             cc---ccccCccHHHHHHHcCCHHHHHHHH----HCCCCCCcccCCCCChHHHHHHHcCCHHHHHHH-----HHCCCCCc
Confidence            42   3 35899999999999999999999    7899999999999987 9999999988777765     89999999


Q ss_pred             cccCCCCChHHHH
Q 041107          159 ATNKQNISAEHIY  171 (374)
Q Consensus       159 ~~n~~g~t~l~~a  171 (374)
                      .+|.+| ++++.+
T Consensus       222 ~~~~~~-~~l~~~  233 (284)
T PHA02791        222 SVNLEN-VLLDDA  233 (284)
T ss_pred             cCcccC-ccCCCH
Confidence            999955 777655

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.1e-26  Score=221.56  Aligned_cols=178  Identities=15%  Similarity=0.019  Sum_probs=158.8

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++..+..++..+.+|.||||.|++.|+.++|++|+++|+++ +..+. .|.||||.|+..|+.+++++|+++|++.
T Consensus        17 v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~-~~~t~L~~A~~~~~~~iv~~Ll~~g~~~   94 (434)
T PHA02874         17 IEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINT-KIPHPLLTAIKIGAHDIIKLLIDNGVDT   94 (434)
T ss_pred             HHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            567888888889999999999999999999999999999999999 88888 9999999999999999999999887653


Q ss_pred             ----------------------cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccc
Q 041107           82 ----------------------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQ  139 (374)
Q Consensus        82 ----------------------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~  139 (374)
                                            .+.+|..|+||||+|+..|+.+++++|+    +.|+++|.+|.+|+||||+|+..|+.
T Consensus        95 ~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll----~~gad~n~~d~~g~tpLh~A~~~~~~  170 (434)
T PHA02874         95 SILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLF----EYGADVNIEDDNGCYPIHIAIKHNFF  170 (434)
T ss_pred             CcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHH----hCCCCCCCcCCCCCCHHHHHHHCCcH
Confidence                                  2456889999999999999999999998    78899999999999999999999887


Q ss_pred             cccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          140 SYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       140 ~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      +.++.|     ++.|++++..|..|.||+|+|...+..   ++++++.+.++..
T Consensus       171 ~iv~~L-----l~~g~~~n~~~~~g~tpL~~A~~~g~~---~iv~~Ll~~g~~i  216 (434)
T PHA02874        171 DIIKLL-----LEKGAYANVKDNNGESPLHNAAEYGDY---ACIKLLIDHGNHI  216 (434)
T ss_pred             HHHHHH-----HHCCCCCCCCCCCCCCHHHHHHHcCCH---HHHHHHHhCCCCC
Confidence            777665     889999999999999999999887776   7888888776543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.2e-26  Score=199.21  Aligned_cols=150  Identities=18%  Similarity=0.173  Sum_probs=123.5

Q ss_pred             ccccCCCCCcHHHHHHHcC--CHHHHHHHhhcCCcccccccCCCCchHHHHHHHc---CCHHHHHHHHHhCCCccccccC
Q 041107           13 TRERDRHGWTPLHYAVYLD--RCFISKCLLEADKSAALISDEDRKMTALHLAAGR---GDVWMVQEIIDHCPECCEVVDD   87 (374)
Q Consensus        13 ~~~~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~   87 (374)
                      ++..|..|.||||+|+..+  +.+++++|+++|+++ +.++...|+||||+|+..   ++.+++++|+++|+++ +.+|.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~  121 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDE  121 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCC
Confidence            5678888999999998754  789999999999998 776532789999998753   4789999999999986 78899


Q ss_pred             CCCcHHHHHHHh--ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH-HhhccccccceeeeccccccccccccccCCC
Q 041107           88 RGWNVLHFAMVS--FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL-AAVCRQSYDARYDIVPWKIAKAHFQATNKQN  164 (374)
Q Consensus        88 ~g~t~Lh~A~~~--~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A-~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g  164 (374)
                      +|+||||.|+..  ++.+++++|+    +.|+++|.+|.+|+||||.+ +..++.+++..|     ++.|++++.+|..|
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li----~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~L-----l~~Gadi~~~d~~g  192 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLI----DSGVSFLNKDFDNNNILYSYILFHSDKKIFDFL-----TSLGIDINETNKSG  192 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHH----HcCCCcccccCCCCcHHHHHHHhcCCHHHHHHH-----HHcCCCCCCCCCCC
Confidence            999999998764  6789999998    78889999999999999964 455555555544     78899999999999


Q ss_pred             CChHHHHHh
Q 041107          165 ISAEHIYRY  173 (374)
Q Consensus       165 ~t~l~~a~~  173 (374)
                      +||+++|..
T Consensus       193 ~tpl~la~~  201 (209)
T PHA02859        193 YNCYDLIKF  201 (209)
T ss_pred             CCHHHHHhh
Confidence            999999854

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=1e-25  Score=218.71  Aligned_cols=161  Identities=18%  Similarity=0.111  Sum_probs=126.8

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcC--CHHHHHHHHHhCC
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRG--DVWMVQEIIDHCP   79 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~   79 (374)
                      ++.|+. .+.++|.+|.+|+||||+|++.|+.++++.|+++|+++ +.+|. .|+||||+|+..+  ..+++++|+++|+
T Consensus        55 v~~Ll~-~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~-~g~TpLh~A~~~~~~~~e~v~lLl~~Ga  131 (446)
T PHA02946         55 VEELLH-RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDK-QHKTPLYYLSGTDDEVIERINLLVQYGA  131 (446)
T ss_pred             HHHHHH-CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            344554 56789999999999999999999999999999999999 89999 9999999998866  4789999999999


Q ss_pred             CccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccc--cccceeeecccccccccc
Q 041107           80 ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQ--SYDARYDIVPWKIAKAHF  157 (374)
Q Consensus        80 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~--~~~~~l~L~~~l~~g~~~  157 (374)
                      ++....|..|+|||| |+..+..+++++|+    +.|++++.+|..|+||||+|+..++.  ..++.  |   ++.|+++
T Consensus       132 din~~~d~~g~tpL~-aa~~~~~~vv~~Ll----~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~--L---l~~Gadi  201 (446)
T PHA02946        132 KINNSVDEEGCGPLL-ACTDPSERVFKKIM----SIGFEARIVDKFGKNHIHRHLMSDNPKASTISW--M---MKLGISP  201 (446)
T ss_pred             CcccccCCCCCcHHH-HHHCCChHHHHHHH----hccccccccCCCCCCHHHHHHHhcCCCHHHHHH--H---HHcCCCC
Confidence            975457888888887 55567778888887    56677777777777777777765442  22323  3   6677777


Q ss_pred             ccccCCCCChHHHHHhCC
Q 041107          158 QATNKQNISAEHIYRYGF  175 (374)
Q Consensus       158 ~~~n~~g~t~l~~a~~~~  175 (374)
                      +.+|.+|+||+|+|...+
T Consensus       202 n~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        202 SKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             cccCCCCCCHHHHHHHcC
Confidence            777777777777776543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.3e-25  Score=217.44  Aligned_cols=176  Identities=19%  Similarity=0.100  Sum_probs=157.4

Q ss_pred             HHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccc
Q 041107            5 LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEV   84 (374)
Q Consensus         5 lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~   84 (374)
                      +|...+..++..+.+|.||||.|+..|+.++++.|++.|++.....+. +|+||||+|+..|+.+++++|++.|+++ +.
T Consensus        53 ~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~  130 (413)
T PHA02875         53 LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYK-DGMTPLHLATILKKLDIMKLLIARGADP-DI  130 (413)
T ss_pred             HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccC-CCCCHHHHHHHhCCHHHHHHHHhCCCCC-CC
Confidence            444456778888899999999999999999999999999887566677 8999999999999999999999999996 88


Q ss_pred             ccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCC
Q 041107           85 VDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQN  164 (374)
Q Consensus        85 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g  164 (374)
                      +|..|+||||+|+..|+.+++++|+    +.|.+++.+|..|+||||+|+..|+.+.++.|     ++.|++++..+.+|
T Consensus       131 ~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~L-----l~~ga~~n~~~~~~  201 (413)
T PHA02875        131 PNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLIIAMAKGDIAICKML-----LDSGANIDYFGKNG  201 (413)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HhCCCCCCcCCCCC
Confidence            8999999999999999999999998    78889999999999999999999987777666     89999999999888


Q ss_pred             C-ChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          165 I-SAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       165 ~-t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      . ||+++|...+..   ++++++.+.|+...
T Consensus       202 ~~t~l~~A~~~~~~---~iv~~Ll~~gad~n  229 (413)
T PHA02875        202 CVAALCYAIENNKI---DIVRLFIKRGADCN  229 (413)
T ss_pred             CchHHHHHHHcCCH---HHHHHHHHCCcCcc
Confidence            5 788888877776   88888888877654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3e-25  Score=218.70  Aligned_cols=124  Identities=19%  Similarity=0.172  Sum_probs=69.5

Q ss_pred             HHHHhhcCCcccccccCCC-CchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhccc
Q 041107           36 SKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPA  114 (374)
Q Consensus        36 v~~Ll~~~~~~~~~~d~~~-g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~  114 (374)
                      ++.|+++|+++ +.++. . |+||||+|+..|+.++++.|++.|+++ +.+|..|+||||.|+.+++.+++++|+    +
T Consensus       150 v~~Ll~~gadi-n~~~~-~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll----~  222 (477)
T PHA02878        150 TKLLLSYGADI-NMKDR-HKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILL----E  222 (477)
T ss_pred             HHHHHHcCCCC-CccCC-CCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHH----H
Confidence            33344444444 44444 4 666666666666666666666666654 555566666666666666666666665    5


Q ss_pred             chhhhcccCCCCCcHHHHHHhh-ccccccceeeeccccccccccccccC-CCCChHHHH
Q 041107          115 VRNLIFKKDVKGNTPFHVLAAV-CRQSYDARYDIVPWKIAKAHFQATNK-QNISAEHIY  171 (374)
Q Consensus       115 ~~~~~n~~d~~G~T~LH~A~~~-g~~~~~~~l~L~~~l~~g~~~~~~n~-~g~t~l~~a  171 (374)
                      .|+++|.+|.+|+||||+|+.. ++.+.++.|     ++.|++++..+. .|.||+|+|
T Consensus       223 ~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~L-----l~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        223 NGASTDARDKCGNTPLHISVGYCKDYDILKLL-----LEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHH-----HHcCCCCCccCCCCCCCHHHHH
Confidence            5556666666666666666643 233333333     555666665554 466666665

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.3e-25  Score=219.85  Aligned_cols=173  Identities=21%  Similarity=0.222  Sum_probs=108.5

Q ss_pred             HHHHhhCCccccccCCCCCcHHHHHH--HcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcC--CHHHHHHHHHhC
Q 041107            3 LLLLDKKKSLTRERDRHGWTPLHYAV--YLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRG--DVWMVQEIIDHC   78 (374)
Q Consensus         3 ~~lL~~~~~~~~~~d~~g~TpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~   78 (374)
                      +.|++ .+..++..|..|.||||+|+  ..|+.+++++|+++|+++ +..+. .|.||||+|+..|  +.++++.|+++|
T Consensus        90 ~~Ll~-~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~iv~~Ll~~g  166 (480)
T PHA03100         90 KLLLE-YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNS-DGENLLHLYLESNKIDLKILKLLIDKG  166 (480)
T ss_pred             HHHHH-CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCC-CCCcHHHHHHHcCCChHHHHHHHHHCC
Confidence            33443 34445777777777777777  777777777777777776 66666 7777777777777  777777777777


Q ss_pred             CCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCC------CcHHHHHHhhcc--ccccceeeeccc
Q 041107           79 PECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKG------NTPFHVLAAVCR--QSYDARYDIVPW  150 (374)
Q Consensus        79 ~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G------~T~LH~A~~~g~--~~~~~~l~L~~~  150 (374)
                      +++ +..|..|.||||+|+..|+.+++++|+    +.|++++..|..|      .||||.|+..|+  ...+..|     
T Consensus       167 ~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll----~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~L-----  236 (480)
T PHA03100        167 VDI-NAKNRYGYTPLHIAVEKGNIDVIKFLL----DNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYL-----  236 (480)
T ss_pred             CCc-ccccCCCCCHHHHHHHhCCHHHHHHHH----HcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHH-----
Confidence            775 566667777777777777777777776    4555555555555      555555555554  3333333     


Q ss_pred             cccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107          151 KIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       151 l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                      ++.|++++.+|..|.||+|+|...+..   ++.++|.+.|+
T Consensus       237 l~~g~din~~d~~g~TpL~~A~~~~~~---~iv~~Ll~~ga  274 (480)
T PHA03100        237 LSYGVPINIKDVYGFTPLHYAVYNNNP---EFVKYLLDLGA  274 (480)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCH---HHHHHHHHcCC
Confidence            455555555555555555555544443   44444544444

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.9e-25  Score=220.07  Aligned_cols=157  Identities=20%  Similarity=0.122  Sum_probs=141.2

Q ss_pred             HHHhhCCccccccCCC-CCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 041107            4 LLLDKKKSLTRERDRH-GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC   82 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~-g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   82 (374)
                      ++|...+.+++.+|.+ |+||||+|+..|+.++++.|+++|+++ +.+|. .|+||||+|+..|+.++++.|++.|+++ 
T Consensus       151 ~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-  227 (477)
T PHA02878        151 KLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDK-TNNSPLHHAVKHYNKPIVHILLENGAST-  227 (477)
T ss_pred             HHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHhCCHHHHHHHHHcCCCC-
Confidence            3455567889999998 999999999999999999999999999 99999 9999999999999999999999999996 


Q ss_pred             ccccCCCCcHHHHHHHh-ccHHHHHhHHhhcccchhhhcccCC-CCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107           83 EVVDDRGWNVLHFAMVS-FYARDLKHLVDKYPAVRNLIFKKDV-KGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT  160 (374)
Q Consensus        83 ~~~d~~g~t~Lh~A~~~-~~~~~~~~Ll~~~~~~~~~~n~~d~-~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~  160 (374)
                      +.+|..|+||||+|+.. ++.+++++|+    +.|+++|.+|. .|+||||+|+.  +...+..|     ++.|+|+|..
T Consensus       228 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll----~~gadvn~~~~~~g~TpLh~A~~--~~~~v~~L-----l~~gadin~~  296 (477)
T PHA02878        228 DARDKCGNTPLHISVGYCKDYDILKLLL----EHGVDVNAKSYILGLTALHSSIK--SERKLKLL-----LEYGADINSL  296 (477)
T ss_pred             CCCCCCCCCHHHHHHHhcCCHHHHHHHH----HcCCCCCccCCCCCCCHHHHHcc--CHHHHHHH-----HHCCCCCCCc
Confidence            88999999999999986 7899999998    88999999986 89999999954  44444444     8999999999


Q ss_pred             cCCCCChHHHHHhC
Q 041107          161 NKQNISAEHIYRYG  174 (374)
Q Consensus       161 n~~g~t~l~~a~~~  174 (374)
                      |.+|.||+++|...
T Consensus       297 d~~g~TpL~~A~~~  310 (477)
T PHA02878        297 NSYKLTPLSSAVKQ  310 (477)
T ss_pred             CCCCCCHHHHHHHH
Confidence            99999999999764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=5.9e-25  Score=214.13  Aligned_cols=171  Identities=20%  Similarity=0.102  Sum_probs=146.6

Q ss_pred             hhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 041107            7 DKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD   86 (374)
Q Consensus         7 ~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d   86 (374)
                      ...+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|. .|.||||+|+..|+.+++++|++.|++. +..|
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~  187 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDD-NGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKD  187 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCC
Confidence            3456778899999999999999999999999999999999 88998 9999999999999999999999999986 7889


Q ss_pred             CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCC
Q 041107           87 DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNIS  166 (374)
Q Consensus        87 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t  166 (374)
                      ..|+||||+|+..|+.+++++|+    +.|.+++.+|.+|+||||+|+..+. ..+ .+     +..|++++.+|.+|+|
T Consensus       188 ~~g~tpL~~A~~~g~~~iv~~Ll----~~g~~i~~~~~~g~TpL~~A~~~~~-~~i-~~-----Ll~~~~in~~d~~G~T  256 (434)
T PHA02874        188 NNGESPLHNAAEYGDYACIKLLI----DHGNHIMNKCKNGFTPLHNAIIHNR-SAI-EL-----LINNASINDQDIDGST  256 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHCCh-HHH-HH-----HHcCCCCCCcCCCCCC
Confidence            99999999999999999999998    7788889999999999999998754 222 23     3358889999999999


Q ss_pred             hHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          167 AEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       167 ~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      |+|+|...+..  .++.+.|.+.++..
T Consensus       257 pLh~A~~~~~~--~~iv~~Ll~~gad~  281 (434)
T PHA02874        257 PLHHAINPPCD--IDIIDILLYHKADI  281 (434)
T ss_pred             HHHHHHhcCCc--HHHHHHHHHCcCCC
Confidence            99998764422  26777777766654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.92  E-value=4.4e-25  Score=221.73  Aligned_cols=174  Identities=18%  Similarity=0.104  Sum_probs=135.9

Q ss_pred             HHhhCCccccccCCCCCcHHHHHHHcCC--HHHHHHHhhcCCcccccccCCCCchHHHHH--------------------
Q 041107            5 LLDKKKSLTRERDRHGWTPLHYAVYLDR--CFISKCLLEADKSAALISDEDRKMTALHLA--------------------   62 (374)
Q Consensus         5 lL~~~~~~~~~~d~~g~TpLh~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~A--------------------   62 (374)
                      +|...+.+++.+|.+|+||||+|++.|+  .++|++|+++|+++ +.+|. .|+||||+|                    
T Consensus       197 lLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d  274 (764)
T PHA02716        197 WLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCV-NGMSPIMTYIINIDNINPEITNIYIESLD  274 (764)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHhhhccCHHHHHHHHHhcc
Confidence            3445578899999999999999999985  48999999999998 88998 999999965                    


Q ss_pred             -----------------HHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh--ccHHHHHhHHhhcccchhhhcccC
Q 041107           63 -----------------AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS--FYARDLKHLVDKYPAVRNLIFKKD  123 (374)
Q Consensus        63 -----------------a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--~~~~~~~~Ll~~~~~~~~~~n~~d  123 (374)
                                       +..|+.++++.|++.|+++ +.+|..|+||||+|+..  ++.+++++|+    +.|+++|.+|
T Consensus       275 ~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLL----e~GADIN~kD  349 (764)
T PHA02716        275 GNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLH----EYGNDLNEPD  349 (764)
T ss_pred             ccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHH----HcCCCCccCC
Confidence                             4557888999999999986 78899999999987653  5788999998    7788999999


Q ss_pred             CCCCcHHHHHHhh--------------ccccccceeeeccccccccccccccCCCCChHHHHH-hCCCccHHHHHHHHHh
Q 041107          124 VKGNTPFHVLAAV--------------CRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYR-YGFPDLEQEIQELSKA  188 (374)
Q Consensus       124 ~~G~T~LH~A~~~--------------g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~-~~~~~~~~~i~~~l~~  188 (374)
                      ..|+||||+|+..              ++.+.++.|     ++.|++++.+|..|+||+|.+. ........+++++|.+
T Consensus       350 ~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklL-----L~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis  424 (764)
T PHA02716        350 NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCL-----ISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLIS  424 (764)
T ss_pred             CCCCCHHHHHHHhhhhhccccccccccChHHHHHHH-----HHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHh
Confidence            9999999998752              333444444     7889999999999999999421 1111112356666655


Q ss_pred             cC
Q 041107          189 DG  190 (374)
Q Consensus       189 ~~  190 (374)
                      .+
T Consensus       425 ~~  426 (764)
T PHA02716        425 DK  426 (764)
T ss_pred             Cc
Confidence            43

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.92  E-value=8.1e-25  Score=219.79  Aligned_cols=181  Identities=12%  Similarity=0.047  Sum_probs=147.7

Q ss_pred             hHHHHhhCCcccccc-CCCCCcHHHHHHHc--CCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCC--HHHHHHHHH
Q 041107            2 PLLLLDKKKSLTRER-DRHGWTPLHYAVYL--DRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGD--VWMVQEIID   76 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~-d~~g~TpLh~Aa~~--g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~--~~~v~~Ll~   76 (374)
                      ++.|++.++.++|.+ |..|.||||+|+..  ++.+++++|+++|+++ +.+|. .|.||||+|++.|+  .+++++|++
T Consensus       158 Vk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~-~G~TPLH~Aa~~g~~~~eIVklLLe  235 (764)
T PHA02716        158 IKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNN-HLITPLHTYLITGNVCASVIKKIIE  235 (764)
T ss_pred             HHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            566776654788988 89999999998754  6789999999999999 99999 99999999999995  599999999


Q ss_pred             hCCCccccccCCCCcHHHHHH-------------------------------------HhccHHHHHhHHhhcccchhhh
Q 041107           77 HCPECCEVVDDRGWNVLHFAM-------------------------------------VSFYARDLKHLVDKYPAVRNLI  119 (374)
Q Consensus        77 ~~~~~~~~~d~~g~t~Lh~A~-------------------------------------~~~~~~~~~~Ll~~~~~~~~~~  119 (374)
                      +|+++ +.+|..|+||||.|+                                     ++|+.+++++|+    +.|+++
T Consensus       236 ~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL----e~GAdI  310 (764)
T PHA02716        236 LGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL----QPGVKL  310 (764)
T ss_pred             cCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHH----hCCCce
Confidence            99996 889999999999764                                     335667777777    778999


Q ss_pred             cccCCCCCcHHHHHHhh--ccccccceeeeccccccccccccccCCCCChHHHHHhC-----------CCccHHHHHHHH
Q 041107          120 FKKDVKGNTPFHVLAAV--CRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYG-----------FPDLEQEIQELS  186 (374)
Q Consensus       120 n~~d~~G~T~LH~A~~~--g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~-----------~~~~~~~i~~~l  186 (374)
                      |.+|.+|+||||+|+..  ++.+.++.|     ++.|++++.+|..|+||+|+|...           ......++++.|
T Consensus       311 N~kD~~G~TPLH~Aaa~~~~~~eIVklL-----Le~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklL  385 (764)
T PHA02716        311 HYKDSAGRTCLHQYILRHNISTDIIKLL-----HEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCL  385 (764)
T ss_pred             eccCCCCCCHHHHHHHHhCCCchHHHHH-----HHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHH
Confidence            99999999999998754  344555544     889999999999999999987531           011234778888


Q ss_pred             HhcCCCCC
Q 041107          187 KADGSGQY  194 (374)
Q Consensus       187 ~~~~~~~~  194 (374)
                      .+.|+...
T Consensus       386 L~~GADIn  393 (764)
T PHA02716        386 ISLGADIT  393 (764)
T ss_pred             HHCCCCCC
Confidence            88776543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.92  E-value=6.6e-25  Score=216.65  Aligned_cols=168  Identities=20%  Similarity=0.143  Sum_probs=109.7

Q ss_pred             CCccccccCCCCCcHHHHHHHcC--CHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 041107            9 KKSLTRERDRHGWTPLHYAVYLD--RCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD   86 (374)
Q Consensus         9 ~~~~~~~~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d   86 (374)
                      .+..++.+|..|.||||+|+..|  +.++++.|+++|+++ +.+|. .|.||||+|+..|+.+++++|+++|+++ ...+
T Consensus       130 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~  206 (480)
T PHA03100        130 NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNR-YGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGD  206 (480)
T ss_pred             cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccC-CCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCC
Confidence            44556666666777777777766  667777777776666 66666 6677777777777777777777776664 5555


Q ss_pred             CCC------CcHHHHHHHhcc--HHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccc
Q 041107           87 DRG------WNVLHFAMVSFY--ARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQ  158 (374)
Q Consensus        87 ~~g------~t~Lh~A~~~~~--~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~  158 (374)
                      ..|      .||||.|+..++  .+++++|    .+.|.++|.+|..|+||||+|+..|+.+.++.|     ++.|+|++
T Consensus       207 ~~~~~~~~~~t~l~~a~~~~~~~~~iv~~L----l~~g~din~~d~~g~TpL~~A~~~~~~~iv~~L-----l~~gad~n  277 (480)
T PHA03100        207 IETLLFTIFETPLHIAACYNEITLEVVNYL----LSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYL-----LDLGANPN  277 (480)
T ss_pred             CCCCcHHHHHhHHHHHHHhCcCcHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCC
Confidence            566      667777776666  6666665    245566667777777777777766665555444     56666777


Q ss_pred             cccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107          159 ATNKQNISAEHIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       159 ~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                      .+|..|.||+++|...+..   ++++++.+.|+
T Consensus       278 ~~d~~g~tpl~~A~~~~~~---~iv~~Ll~~g~  307 (480)
T PHA03100        278 LVNKYGDTPLHIAILNNNK---EIFKLLLNNGP  307 (480)
T ss_pred             ccCCCCCcHHHHHHHhCCH---HHHHHHHhcCC
Confidence            7777777777766655544   55666665554

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.1e-24  Score=215.11  Aligned_cols=172  Identities=12%  Similarity=0.027  Sum_probs=110.3

Q ss_pred             hCCccccccCCCCCcHHHHHHHcC---CHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCC---HHHHHHHHHhCCCc
Q 041107            8 KKKSLTRERDRHGWTPLHYAVYLD---RCFISKCLLEADKSAALISDEDRKMTALHLAAGRGD---VWMVQEIIDHCPEC   81 (374)
Q Consensus         8 ~~~~~~~~~d~~g~TpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~---~~~v~~Ll~~~~~~   81 (374)
                      ..++++|.+|.+|+||||+|+..|   +.+++++|+++|+++ +.+|. .|.||||+|++.|+   .+++++|++.|+++
T Consensus        97 ~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~-~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798         97 ENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDK-DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             HCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCC-CCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            345556666666666666666654   456666666666666 66666 66666666666665   66666666666665


Q ss_pred             cccccCCCCcHHHHHHHh----ccHHHHHhHHhhcc-----------------------------------cchhhhccc
Q 041107           82 CEVVDDRGWNVLHFAMVS----FYARDLKHLVDKYP-----------------------------------AVRNLIFKK  122 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~----~~~~~~~~Ll~~~~-----------------------------------~~~~~~n~~  122 (374)
                      ....+..|.||||.++.+    ++.+++++|++...                                   ..+.++|.+
T Consensus       175 n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~  254 (489)
T PHA02798        175 NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQV  254 (489)
T ss_pred             ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCc
Confidence            222234566666666553    24555665553220                                   002356677


Q ss_pred             CCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          123 DVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       123 d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      |..|+||||+|+..|+...++.|     ++.|+|+|.+|..|+||+++|...+..   .+++.+.+.
T Consensus       255 d~~G~TPL~~A~~~~~~~~v~~L-----L~~GAdin~~d~~G~TpL~~A~~~~~~---~iv~~lL~~  313 (489)
T PHA02798        255 DELGFNPLYYSVSHNNRKIFEYL-----LQLGGDINIITELGNTCLFTAFENESK---FIFNSILNK  313 (489)
T ss_pred             CcCCccHHHHHHHcCcHHHHHHH-----HHcCCcccccCCCCCcHHHHHHHcCcH---HHHHHHHcc
Confidence            88888888888888776666655     778888888888888888888766554   555555443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-25  Score=216.93  Aligned_cols=150  Identities=27%  Similarity=0.261  Sum_probs=138.5

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHH-hCCCccccccCC
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID-HCPECCEVVDDR   88 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~   88 (374)
                      ..++|..|++|.||||+||+.|+.+.++.|+..|+++ +.+++ ++.||||.||+.|+.+.++.|++ .+-...+..|-.
T Consensus       263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~  340 (929)
T KOG0510|consen  263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNK-DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH  340 (929)
T ss_pred             HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCC-CCCCchHHHHHcccHHHHHHHHhCcCcccccccccc
Confidence            3567888999999999999999999999999999999 99998 99999999999999999999999 555567888999


Q ss_pred             CCcHHHHHHHhccHHHHHhHHhhcccchhhhc---ccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCC
Q 041107           89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIF---KKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNI  165 (374)
Q Consensus        89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n---~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~  165 (374)
                      |.||||+|+++|+..+++.|+    +.|++.+   ..|.+|+||||+|+++|+...++.|     +..|+++..+|++|.
T Consensus       341 g~tpLHlaa~~gH~~v~qlLl----~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~L-----i~~Ga~I~~~n~~g~  411 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRVVQLLL----NKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKL-----ISHGADIGVKNKKGK  411 (929)
T ss_pred             CCCchhhhhhcCHHHHHHHHH----hcChhhhcccccccCCchhhhHHHHhccHHHHHHH-----HHcCCceeecccccc
Confidence            999999999999999999999    7777665   5699999999999999998888777     899999999999999


Q ss_pred             ChHHH
Q 041107          166 SAEHI  170 (374)
Q Consensus       166 t~l~~  170 (374)
                      |++++
T Consensus       412 SA~~~  416 (929)
T KOG0510|consen  412 SAFDT  416 (929)
T ss_pred             ccccc
Confidence            99994

>PHA02946 ankyin-like protein; Provisional

Probab=99.92  E-value=2e-24  Score=209.76  Aligned_cols=174  Identities=18%  Similarity=0.139  Sum_probs=143.7

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCC--HHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCC
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDR--CFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP   79 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   79 (374)
                      ++.||+ .+++++.+|.+|+||||+|+..++  .+++++|+++|+++....|. +|.|||| ||..|+.++++.|++.++
T Consensus        88 v~lLL~-~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~-~g~tpL~-aa~~~~~~vv~~Ll~~ga  164 (446)
T PHA02946         88 VAMLLT-HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE-EGCGPLL-ACTDPSERVFKKIMSIGF  164 (446)
T ss_pred             HHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC-CCCcHHH-HHHCCChHHHHHHHhccc
Confidence            444555 578899999999999999998764  89999999999999335687 9999998 677799999999999999


Q ss_pred             CccccccCCCCcHHHHHHHhc--cHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcc--ccccceeeecccccccc
Q 041107           80 ECCEVVDDRGWNVLHFAMVSF--YARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCR--QSYDARYDIVPWKIAKA  155 (374)
Q Consensus        80 ~~~~~~d~~g~t~Lh~A~~~~--~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~--~~~~~~l~L~~~l~~g~  155 (374)
                      ++ +..|..|+||||.|+..+  +.+++++|+    +.|+++|.+|.+|+||||+|+..|.  ...+. + |   + .|+
T Consensus       165 d~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll----~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~-l-L---l-~ga  233 (446)
T PHA02946        165 EA-RIVDKFGKNHIHRHLMSDNPKASTISWMM----KLGISPSKPDHDGNTPLHIVCSKTVKNVDIIN-L-L---L-PST  233 (446)
T ss_pred             cc-cccCCCCCCHHHHHHHhcCCCHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHcCCCcHHHHH-H-H---H-cCC
Confidence            86 889999999999998864  468899998    7899999999999999999999763  22333 3 2   4 489


Q ss_pred             ccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107          156 HFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       156 ~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                      ++|.+|.+|+||+|+|...+..  .++.+.+.+.++
T Consensus       234 din~~d~~G~TpLh~A~~~~~~--~~~~~~Ll~~g~  267 (446)
T PHA02946        234 DVNKQNKFGDSPLTLLIKTLSP--AHLINKLLSTSN  267 (446)
T ss_pred             CCCCCCCCCCCHHHHHHHhCCh--HHHHHHHHhCCC
Confidence            9999999999999998776542  255666666554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=9.4e-25  Score=211.63  Aligned_cols=172  Identities=20%  Similarity=0.155  Sum_probs=136.3

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccc--------------ccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 041107           11 SLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAA--------------LISDEDRKMTALHLAAGRGDVWMVQEIID   76 (374)
Q Consensus        11 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~--------------~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~   76 (374)
                      ..+|.-|.+|.||||.|+..|+.++++.+|+.++...              +..|+ +|.||||+||+.|+++.++.|+.
T Consensus       216 ~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~-dg~tpLH~a~r~G~~~svd~Ll~  294 (929)
T KOG0510|consen  216 THINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN-DGCTPLHYAARQGGPESVDNLLG  294 (929)
T ss_pred             cccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc-cCCchHHHHHHcCChhHHHHHHH
Confidence            3455555666666666666666666666666544332              33566 89999999999999999999999


Q ss_pred             hCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107           77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH  156 (374)
Q Consensus        77 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~  156 (374)
                      .|+++ +.++.++.||||.||.+|+.+.++-|++.  ..-.++|..|..|+||||+|++.||+..++.|     ++.|++
T Consensus       295 ~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~--~~~rllne~D~~g~tpLHlaa~~gH~~v~qlL-----l~~GA~  366 (929)
T KOG0510|consen  295 FGASI-NSKNKDEESPLHFAAIYGRINTVERLLQE--SDTRLLNESDLHGMTPLHLAAKSGHDRVVQLL-----LNKGAL  366 (929)
T ss_pred             cCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhC--cCccccccccccCCCchhhhhhcCHHHHHHHH-----HhcChh
Confidence            99996 88899999999999999999999999851  23358899999999999999999998777755     788888


Q ss_pred             cc---cccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          157 FQ---ATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       157 ~~---~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      ..   -.|.+|.||||+|+..+..   ..++.+...|+..+
T Consensus       367 ~~~~~e~D~dg~TaLH~Aa~~g~~---~av~~Li~~Ga~I~  404 (929)
T KOG0510|consen  367 FLNMSEADSDGNTALHLAAKYGNT---SAVQKLISHGADIG  404 (929)
T ss_pred             hhcccccccCCchhhhHHHHhccH---HHHHHHHHcCCcee
Confidence            77   4599999999999888877   77777777777663

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.4e-24  Score=213.03  Aligned_cols=177  Identities=15%  Similarity=0.049  Sum_probs=142.6

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHc---CCHHHHHHHhhcCCcccccccCCCCchHHHHHHHc--CCHHHHHHHHHhC
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAVYL---DRCFISKCLLEADKSAALISDEDRKMTALHLAAGR--GDVWMVQEIIDHC   78 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~--g~~~~v~~Ll~~~   78 (374)
                      ++|...++++|.+|.+|+||||.|+..   |+.+++++|+++|+++.+.+|. .|+||||+|+..  ++.+++++|+++|
T Consensus        92 ~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~-~g~tpLh~a~~~~~~~~~iv~~Ll~~G  170 (494)
T PHA02989         92 KLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS-RGYNLLHMYLESFSVKKDVIKILLSFG  170 (494)
T ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC-CCCCHHHHHHHhccCCHHHHHHHHHcC
Confidence            344556788999999999999988765   6789999999999998557788 999999998754  6899999999999


Q ss_pred             CCccccccCCCCcHHHHHHHhc----cHHHHHhHHhhccc----------------------------------chhhhc
Q 041107           79 PECCEVVDDRGWNVLHFAMVSF----YARDLKHLVDKYPA----------------------------------VRNLIF  120 (374)
Q Consensus        79 ~~~~~~~d~~g~t~Lh~A~~~~----~~~~~~~Ll~~~~~----------------------------------~~~~~n  120 (374)
                      +++....|..|.||||+|+.++    +.+++++|+++...                                  .++++|
T Consensus       171 adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn  250 (494)
T PHA02989        171 VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKIN  250 (494)
T ss_pred             CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCC
Confidence            9974436889999999998764    78899998854311                                  123457


Q ss_pred             ccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          121 KKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       121 ~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      .+|.+|+||||+|+..|+.+.++.|     ++.|+|++.+|..|+||+++|...+..   ++++.+.+.
T Consensus       251 ~~d~~G~TpL~~Aa~~~~~~~v~~L-----L~~Gadin~~d~~G~TpL~~A~~~~~~---~iv~~LL~~  311 (494)
T PHA02989        251 KKDKKGFNPLLISAKVDNYEAFNYL-----LKLGDDIYNVSKDGDTVLTYAIKHGNI---DMLNRILQL  311 (494)
T ss_pred             CCCCCCCCHHHHHHHhcCHHHHHHH-----HHcCCCccccCCCCCCHHHHHHHcCCH---HHHHHHHhc
Confidence            7888899999999999887777665     789999999999999999999877665   555555553

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=6.7e-24  Score=200.40  Aligned_cols=178  Identities=10%  Similarity=-0.089  Sum_probs=151.5

Q ss_pred             HHHhhCCcccc------ccCCCCCcHHHHHHH--cCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHH
Q 041107            4 LLLDKKKSLTR------ERDRHGWTPLHYAVY--LDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII   75 (374)
Q Consensus         4 ~lL~~~~~~~~------~~d~~g~TpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll   75 (374)
                      ++|..++..++      .++..++|+||+++.  .|+.++|++|+++|+++ +.  . ++.||+|.|+..|+.+++++|+
T Consensus        94 ~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~-~~~t~lh~A~~~~~~eIVk~Ll  169 (437)
T PHA02795         94 SALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--I-ECLNAYFRGICKKESSVVEFIL  169 (437)
T ss_pred             HHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--C-CCCCHHHHHHHcCcHHHHHHHH
Confidence            45556667767      788899999999999  89999999999999999 65  3 5689999999999999999999


Q ss_pred             HhCCCccccc-----cCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccc
Q 041107           76 DHCPECCEVV-----DDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPW  150 (374)
Q Consensus        76 ~~~~~~~~~~-----d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~  150 (374)
                      ++|++..+..     +..|.+++|.|+.+++.+++++|+    +.|+++|.+|.+|+||||+|+..|+.+.++.|     
T Consensus       170 s~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LI----s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL-----  240 (437)
T PHA02795        170 NCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCI----PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL-----  240 (437)
T ss_pred             hcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHH----hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH-----
Confidence            9997543333     245889999999999999999999    88999999999999999999999988777766     


Q ss_pred             cccccccccccCCCCChHHHHHhCCCc-----cHHHHHHHHHhcCCCCC
Q 041107          151 KIAKAHFQATNKQNISAEHIYRYGFPD-----LEQEIQELSKADGSGQY  194 (374)
Q Consensus       151 l~~g~~~~~~n~~g~t~l~~a~~~~~~-----~~~~i~~~l~~~~~~~~  194 (374)
                      ++.|++++.+|..|.||+|+|...+..     ...++++.|.+.++...
T Consensus       241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            899999999999999999999876631     23478888877666443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.91  E-value=8e-24  Score=217.26  Aligned_cols=181  Identities=18%  Similarity=0.095  Sum_probs=108.7

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc--
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC--   81 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~--   81 (374)
                      ++|...+.++|.+|..|+||||+||+.|+.++|++|+++|+++ +..+. +|.||||+|+..|+.++++.|++.+++.  
T Consensus       162 k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~-~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~  239 (682)
T PHA02876        162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIAL-DDLSVLECAVDSKNIDTIKAIIDNRSNINK  239 (682)
T ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            4556667889999999999999999999999999999999887 66555 5556666655555555555444433221  


Q ss_pred             --------------------------cccccCCCCcHHHHHHHhccH-HHHHhHHhhc----------------------
Q 041107           82 --------------------------CEVVDDRGWNVLHFAMVSFYA-RDLKHLVDKY----------------------  112 (374)
Q Consensus        82 --------------------------~~~~d~~g~t~Lh~A~~~~~~-~~~~~Ll~~~----------------------  112 (374)
                                                .+..|..|+||||+|+..+.. +++++|++..                      
T Consensus       240 ~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~  319 (682)
T PHA02876        240 NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGY  319 (682)
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCC
Confidence                                      123344455555555554443 3444444000                      


Q ss_pred             --------ccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHH
Q 041107          113 --------PAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQE  184 (374)
Q Consensus       113 --------~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~  184 (374)
                              ...|+++|.+|..|+||||+|+..+.......+ |   ++.|++++.+|..|+||+|+|...+..   ++++
T Consensus       320 ~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~l-L---l~~gadin~~d~~G~TpLh~Aa~~~~~---~iv~  392 (682)
T PHA02876        320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVIT-L---LELGANVNARDYCDKTPIHYAAVRNNV---VIIN  392 (682)
T ss_pred             CHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHH-H---HHcCCCCccCCCCCCCHHHHHHHcCCH---HHHH
Confidence                    033444444444445555554443322222223 3   566777777777777777777665554   5666


Q ss_pred             HHHhcCCCC
Q 041107          185 LSKADGSGQ  193 (374)
Q Consensus       185 ~l~~~~~~~  193 (374)
                      .|.+.++..
T Consensus       393 ~Ll~~gad~  401 (682)
T PHA02876        393 TLLDYGADI  401 (682)
T ss_pred             HHHHCCCCc
Confidence            666655543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.91  E-value=6.5e-24  Score=209.06  Aligned_cols=176  Identities=24%  Similarity=0.185  Sum_probs=140.6

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHH--HcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcC--CHHHHHHHHHhCC
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAV--YLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRG--DVWMVQEIIDHCP   79 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~   79 (374)
                      ++|...+..++.+|..|+||||+|+  ..++.++++.|+++|+++ +.+|. .|+||||+|+..+  +.++++.|++.|+
T Consensus       101 ~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~-~g~tpL~~a~~~~~~~~~iv~~Ll~~g~  178 (471)
T PHA03095        101 KLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDL-YGMTPLAVLLKSRNANVELLRLLIDAGA  178 (471)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCC-CCCCHHHHHHHcCCCCHHHHHHHHHcCC
Confidence            4556667889999999999999999  456789999999999998 88898 9999999988765  6889999999999


Q ss_pred             CccccccCCCCcHHHHHHHh--ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccc--ccceeeecccccccc
Q 041107           80 ECCEVVDDRGWNVLHFAMVS--FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQS--YDARYDIVPWKIAKA  155 (374)
Q Consensus        80 ~~~~~~d~~g~t~Lh~A~~~--~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~--~~~~l~L~~~l~~g~  155 (374)
                      +. ...|..|+||||.|+..  +..++++.|+    +.|++++.+|.+|+||||+|+..|+..  .+..  +   +..|+
T Consensus       179 ~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll----~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~--l---l~~g~  248 (471)
T PHA03095        179 DV-YAVDDRFRSLLHHHLQSFKPRARIVRELI----RAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP--L---LIAGI  248 (471)
T ss_pred             CC-cccCCCCCCHHHHHHHHCCCcHHHHHHHH----HcCCCCcccCCCCCCHHHHHHhcCCchHHHHHH--H---HHcCC
Confidence            87 44588999999998876  6778888887    778888888888888888888876532  2222  3   67788


Q ss_pred             ccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          156 HFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       156 ~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      ++|.+|.+|+||+|+|...+..   ++.++|.+.|+...
T Consensus       249 din~~d~~g~TpLh~A~~~~~~---~~v~~LL~~gad~n  284 (471)
T PHA03095        249 SINARNRYGQTPLHYAAVFNNP---RACRRLIALGADIN  284 (471)
T ss_pred             CCCCcCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCc
Confidence            8888888888888888776655   66666666666543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.91  E-value=9.1e-24  Score=208.02  Aligned_cols=176  Identities=17%  Similarity=0.120  Sum_probs=148.2

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcC-CHHHHHHHhhcCCcccccccCCCCchHHHHHH--HcCCHHHHHHHHHhCCC
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAVYLD-RCFISKCLLEADKSAALISDEDRKMTALHLAA--GRGDVWMVQEIIDHCPE   80 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa--~~g~~~~v~~Ll~~~~~   80 (374)
                      ++|...+.++|.+|..|+||||+|+..| +.+++++|+++|+++ +.+|. .|+||||+|+  ..++.++++.|++.|++
T Consensus        67 ~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~-~g~tpLh~a~~~~~~~~~iv~~Ll~~gad  144 (471)
T PHA03095         67 RLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDK-VGRTPLHVYLSGFNINPKVIRLLLRKGAD  144 (471)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHhhCCcCCHHHHHHHHHcCCC
Confidence            3455667889999999999999999999 599999999999999 99999 9999999999  56789999999999999


Q ss_pred             ccccccCCCCcHHHHHHHhc--cHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcc--ccccceeeeccccccccc
Q 041107           81 CCEVVDDRGWNVLHFAMVSF--YARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCR--QSYDARYDIVPWKIAKAH  156 (374)
Q Consensus        81 ~~~~~d~~g~t~Lh~A~~~~--~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~--~~~~~~l~L~~~l~~g~~  156 (374)
                      + +..|..|+||||+|+..+  ..+++++|+    +.|.+++.+|..|+||||+|+....  ....+.|     ++.|++
T Consensus       145 ~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll----~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~L-----l~~g~~  214 (471)
T PHA03095        145 V-NALDLYGMTPLAVLLKSRNANVELLRLLI----DAGADVYAVDDRFRSLLHHHLQSFKPRARIVREL-----IRAGCD  214 (471)
T ss_pred             C-CccCCCCCCHHHHHHHcCCCCHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHH-----HHcCCC
Confidence            6 889999999999999875  678999998    7888999999999999999998643  3334444     899999


Q ss_pred             cccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107          157 FQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSG  192 (374)
Q Consensus       157 ~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~  192 (374)
                      ++.+|..|+||+|+|...+.. ...+++.+.+.++.
T Consensus       215 ~~~~d~~g~tpLh~Aa~~~~~-~~~~v~~ll~~g~d  249 (471)
T PHA03095        215 PAATDMLGNTPLHSMATGSSC-KRSLVLPLLIAGIS  249 (471)
T ss_pred             CcccCCCCCCHHHHHHhcCCc-hHHHHHHHHHcCCC
Confidence            999999999999999876543 22344555554443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=183.99  Aligned_cols=166  Identities=16%  Similarity=0.096  Sum_probs=136.7

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcC--CHHHHHHHHHhCCCcccccc-C
Q 041107           11 SLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRG--DVWMVQEIIDHCPECCEVVD-D   87 (374)
Q Consensus        11 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d-~   87 (374)
                      ...+...+.++||||+|++.|+.+.|+.|++.   . +..|. .|.||||+|+.++  +.+++++|+++|+++ +.++ .
T Consensus        12 ~~~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~---~-n~~~~-~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~   85 (209)
T PHA02859         12 DFTDYLFYRYCNPLFYYVEKDDIEGVKKWIKF---V-NDCND-LYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRD   85 (209)
T ss_pred             hhHHHHhhccCcHHHHHHHhCcHHHHHHHHHh---h-hccCc-cCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCC
Confidence            34455567889999999999999999999975   2 56777 9999999999854  899999999999997 6665 5


Q ss_pred             CCCcHHHHHHHh---ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhh--ccccccceeeeccccccccccccccC
Q 041107           88 RGWNVLHFAMVS---FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAV--CRQSYDARYDIVPWKIAKAHFQATNK  162 (374)
Q Consensus        88 ~g~t~Lh~A~~~---~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~--g~~~~~~~l~L~~~l~~g~~~~~~n~  162 (374)
                      .|+||||+|+..   +..+++++|+    +.|+++|.+|.+|.||||+|+..  ++.+.++.|     ++.|++++.+|.
T Consensus        86 ~g~TpLh~a~~~~~~~~~eiv~~Ll----~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~L-----i~~gadin~~d~  156 (209)
T PHA02859         86 NNLSALHHYLSFNKNVEPEILKILI----DSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLL-----IDSGVSFLNKDF  156 (209)
T ss_pred             CCCCHHHHHHHhCccccHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHH-----HHcCCCcccccC
Confidence            899999998864   4789999998    78999999999999999999864  344455444     899999999999


Q ss_pred             CCCChHHHH-HhCCCccHHHHHHHHHhcCCCCC
Q 041107          163 QNISAEHIY-RYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       163 ~g~t~l~~a-~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      +|.||+|.+ ...+..   ++++.|.+.|+...
T Consensus       157 ~g~t~Lh~~a~~~~~~---~iv~~Ll~~Gadi~  186 (209)
T PHA02859        157 DNNNILYSYILFHSDK---KIFDFLTSLGIDIN  186 (209)
T ss_pred             CCCcHHHHHHHhcCCH---HHHHHHHHcCCCCC
Confidence            999999964 444443   77788888776543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=215.74  Aligned_cols=176  Identities=15%  Similarity=0.066  Sum_probs=124.6

Q ss_pred             HHhhCCccccccCCCCCcHHHHHHHcC-CHHHHHHHhhcCCcccccccCCCCchHHHHHHHc-CCHHHHHHHHHhCCCcc
Q 041107            5 LLDKKKSLTRERDRHGWTPLHYAVYLD-RCFISKCLLEADKSAALISDEDRKMTALHLAAGR-GDVWMVQEIIDHCPECC   82 (374)
Q Consensus         5 lL~~~~~~~~~~d~~g~TpLh~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~   82 (374)
                      +|...+.+++.+|.+|+||||+|+..| +.++++.|++.|+++ +.+|. .|+||||+|+.. ++.++++.|++.|+++ 
T Consensus       292 lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~-~g~TpLh~A~~~~~~~~iv~lLl~~gadi-  368 (682)
T PHA02876        292 KLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADR-LYITPLHQASTLDRNKDIVITLLELGANV-  368 (682)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCccc-CCCcHHHHHHHhCCcHHHHHHHHHcCCCC-
Confidence            344455667777777777777777777 467777777777776 66776 777777777764 4567777777777775 


Q ss_pred             ccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccC
Q 041107           83 EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNK  162 (374)
Q Consensus        83 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~  162 (374)
                      +.+|..|+||||+|+.+++.+++++|+    +.|++++..|..|+||||+|+..++......+ |   ++.|+++|.+|.
T Consensus       369 n~~d~~G~TpLh~Aa~~~~~~iv~~Ll----~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~-L---l~~gadin~~d~  440 (682)
T PHA02876        369 NARDYCDKTPIHYAAVRNNVVIINTLL----DYGADIEALSQKIGTALHFALCGTNPYMSVKT-L---IDRGANVNSKNK  440 (682)
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCccccCCCCCchHHHHHHcCCHHHHHHH-H---HhCCCCCCcCCC
Confidence            677778888888888888888888877    66777777777778888877765543222233 4   778888888888


Q ss_pred             CCCChHHHHHhCC-CccHHHHHHHHHhcCCCCC
Q 041107          163 QNISAEHIYRYGF-PDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       163 ~g~t~l~~a~~~~-~~~~~~i~~~l~~~~~~~~  194 (374)
                      +|+||+|+|...+ ..   ++.+.|.+.|+...
T Consensus       441 ~G~TpLh~Aa~~~~~~---~iv~lLl~~Gad~n  470 (682)
T PHA02876        441 DLSTPLHYACKKNCKL---DVIEMLLDNGADVN  470 (682)
T ss_pred             CCChHHHHHHHhCCcH---HHHHHHHHCCCCCC
Confidence            8888888886643 33   56677777666543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=5.1e-23  Score=203.33  Aligned_cols=182  Identities=14%  Similarity=0.076  Sum_probs=147.1

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHc-----CCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcC---CHHHHHH
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYL-----DRCFISKCLLEADKSAALISDEDRKMTALHLAAGRG---DVWMVQE   73 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g---~~~~v~~   73 (374)
                      ++.|+ ..+.++|.+|..|.||||.|+..     ++.++++.|+++|+++ +.+|. .|+||||+|+.+|   +.+++++
T Consensus        54 v~~Ll-~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~-~G~TpLh~a~~~~~~~~~~iv~~  130 (489)
T PHA02798         54 VKLFI-NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNS-DGETPLYCLLSNGYINNLEILLF  130 (489)
T ss_pred             HHHHH-HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCC-CcCcHHHHHHHcCCcChHHHHHH
Confidence            44444 55778999999999999999864     6789999999999999 99999 9999999999986   7899999


Q ss_pred             HHHhCCCccccccCCCCcHHHHHHHhcc---HHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhc----ccccccee
Q 041107           74 IIDHCPECCEVVDDRGWNVLHFAMVSFY---ARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVC----RQSYDARY  145 (374)
Q Consensus        74 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~---~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g----~~~~~~~l  145 (374)
                      |+++|+++ +.+|.+|.||||+|++.++   .+++++|+    +.|+++|.+| ..|.||||.+++.+    +.+.++.|
T Consensus       131 Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll----~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~L  205 (489)
T PHA02798        131 MIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLL----EKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLF  205 (489)
T ss_pred             HHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHH----HhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHH
Confidence            99999997 8999999999999999987   99999998    7889999885 57999999987643    11111111


Q ss_pred             ----------------------------------eeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107          146 ----------------------------------DIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       146 ----------------------------------~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                                                        .++..+..++|+|.+|..|+||||+|...+..   ++.++|.+.|+
T Consensus       206 i~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~---~~v~~LL~~GA  282 (489)
T PHA02798        206 VDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNR---KIFEYLLQLGG  282 (489)
T ss_pred             HHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcH---HHHHHHHHcCC
Confidence                                              00000233578888999999999999877665   78888888777


Q ss_pred             CCC
Q 041107          192 GQY  194 (374)
Q Consensus       192 ~~~  194 (374)
                      ...
T Consensus       283 din  285 (489)
T PHA02798        283 DIN  285 (489)
T ss_pred             ccc
Confidence            654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=3.4e-23  Score=208.82  Aligned_cols=173  Identities=15%  Similarity=0.126  Sum_probs=137.7

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHc---CCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcC------------
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYL---DRCFISKCLLEADKSAALISDEDRKMTALHLAAGRG------------   66 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g------------   66 (374)
                      +++|+. ++..++.+|.+|+||||+||..   |+.++|++|+++|+++ +.++. .|+||||+|+..|            
T Consensus        15 ~~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~-~g~TpL~~Aa~~g~~~v~~~~~~~L   91 (661)
T PHA02917         15 LKQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNW-RQLTPLEEYTNSRHVKVNKDIAMAL   91 (661)
T ss_pred             HHHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCC-CCCCHHHHHHHcCChhHHHHHHHHH
Confidence            456665 5566788899999999998665   7899999999999999 78888 9999999887654            


Q ss_pred             -----------------------CHHHHHHHHHhCCCccccccCCCCcHHHHHH--HhccHHHHHhHHhhcccchhhhcc
Q 041107           67 -----------------------DVWMVQEIIDHCPECCEVVDDRGWNVLHFAM--VSFYARDLKHLVDKYPAVRNLIFK  121 (374)
Q Consensus        67 -----------------------~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~--~~~~~~~~~~Ll~~~~~~~~~~n~  121 (374)
                                             +.+++++|+++|+++ +..|.+|+||||.|+  .+++.+++++|+    +.|+++|.
T Consensus        92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi----~~Ga~vn~  166 (661)
T PHA02917         92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFI----ENGCSVLY  166 (661)
T ss_pred             HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHH----HcCCCccc
Confidence                                   456677788888886 788999999999654  568999999999    78899887


Q ss_pred             cCCC---C-----------CcHHHHHHh-----------hccccccceeeeccccccccccccccCCCCChHHHHHhCCC
Q 041107          122 KDVK---G-----------NTPFHVLAA-----------VCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFP  176 (374)
Q Consensus       122 ~d~~---G-----------~T~LH~A~~-----------~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~  176 (374)
                      +|.+   |           .||||+|+.           .++.++++.|     ++.|+|+|..|.+|.||+|+|...++
T Consensus       167 ~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~L-----i~~Gadvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        167 EDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCL-----INHGIKPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             cccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHH-----HHCCCCcccCCCCCCcHHHHHHHcCC
Confidence            6643   4           599999986           2344455544     89999999999999999999987665


Q ss_pred             ccHHHHHHHHHh
Q 041107          177 DLEQEIQELSKA  188 (374)
Q Consensus       177 ~~~~~i~~~l~~  188 (374)
                      .. .++++.|.+
T Consensus       242 ~~-~eivk~Li~  252 (661)
T PHA02917        242 ID-IDIVKLLMK  252 (661)
T ss_pred             Cc-HHHHHHHHh
Confidence            31 245665554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=5.6e-23  Score=214.22  Aligned_cols=155  Identities=20%  Similarity=0.093  Sum_probs=137.4

Q ss_pred             HHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 041107            3 LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC   82 (374)
Q Consensus         3 ~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   82 (374)
                      ++|+ +.+.++|.+|.+|+||||+||..|+.++++.|+++|+++ +.+|. +|+||||+|+..|+.++++.|++.++.. 
T Consensus       542 ~~Ll-~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~-~G~TpL~~A~~~g~~~iv~~L~~~~~~~-  617 (823)
T PLN03192        542 EELL-KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDA-NGNTALWNAISAKHHKIFRILYHFASIS-  617 (823)
T ss_pred             HHHH-HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCC-CCCCHHHHHHHhCCHHHHHHHHhcCccc-
Confidence            4444 556779999999999999999999999999999999998 89999 9999999999999999999999876543 


Q ss_pred             ccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccC
Q 041107           83 EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNK  162 (374)
Q Consensus        83 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~  162 (374)
                        .+..|.++||.|+.+|+.++++.|+    +.|+++|.+|.+|+||||+|+..|+.+.++.|     ++.|++++..|.
T Consensus       618 --~~~~~~~~L~~Aa~~g~~~~v~~Ll----~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~L-----l~~GAdv~~~~~  686 (823)
T PLN03192        618 --DPHAAGDLLCTAAKRNDLTAMKELL----KQGLNVDSEDHQGATALQVAMAEDHVDMVRLL-----IMNGADVDKANT  686 (823)
T ss_pred             --CcccCchHHHHHHHhCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHH-----HHcCCCCCCCCC
Confidence              2356789999999999999999998    78999999999999999999999987777665     899999999999


Q ss_pred             CC-CChHHHHH
Q 041107          163 QN-ISAEHIYR  172 (374)
Q Consensus       163 ~g-~t~l~~a~  172 (374)
                      +| .||.+++.
T Consensus       687 ~g~~t~~~l~~  697 (823)
T PLN03192        687 DDDFSPTELRE  697 (823)
T ss_pred             CCCCCHHHHHH
Confidence            98 99999874

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=4.2e-23  Score=189.23  Aligned_cols=164  Identities=18%  Similarity=0.122  Sum_probs=143.0

Q ss_pred             ChHHHHhhCCcccccc--------CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHH
Q 041107            1 VPLLLLDKKKSLTRER--------DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQ   72 (374)
Q Consensus         1 i~~~lL~~~~~~~~~~--------d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~   72 (374)
                      +|++||++.+..+...        ..+|-+||-.|+..||.++||.|+++|+++ |.... ...|||--||..|+.++++
T Consensus        57 vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~-TNStPLraACfDG~leivK  134 (615)
T KOG0508|consen   57 VVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTR-TNSTPLRAACFDGHLEIVK  134 (615)
T ss_pred             HHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccc-cCCccHHHHHhcchhHHHH
Confidence            4678888665544432        346889999999999999999999999998 76666 7789999999999999999


Q ss_pred             HHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccc
Q 041107           73 EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKI  152 (374)
Q Consensus        73 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~  152 (374)
                      +|+++++|+ +..|+.|.|.||+||.+|+.+++++|+    +.|+++|.++..|||+||.++..|+.++++.|     +.
T Consensus       135 yLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLl----e~gADvn~ks~kGNTALH~caEsG~vdivq~L-----l~  204 (615)
T KOG0508|consen  135 YLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLL----EQGADVNAKSYKGNTALHDCAESGSVDIVQLL-----LK  204 (615)
T ss_pred             HHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHH----HhCCCcchhcccCchHHHhhhhcccHHHHHHH-----Hh
Confidence            999999996 999999999999999999999999999    88999999999999999999999998888766     77


Q ss_pred             cccccccccCCCCChHHHHHhCCCc
Q 041107          153 AKAHFQATNKQNISAEHIYRYGFPD  177 (374)
Q Consensus       153 ~g~~~~~~n~~g~t~l~~a~~~~~~  177 (374)
                      .|+.++ +|..|.|||..|...+..
T Consensus       205 ~ga~i~-~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  205 HGAKID-VDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             CCceee-ecCCCCchHHHHhhhcch
Confidence            788775 455599999998665544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=4.7e-23  Score=183.38  Aligned_cols=156  Identities=19%  Similarity=0.129  Sum_probs=139.6

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHc-----CCHHHHHHHHHhCCCcccccc
Q 041107           12 LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGR-----GDVWMVQEIIDHCPECCEVVD   86 (374)
Q Consensus        12 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~d   86 (374)
                      .+|..|.||+|+||||+.+++.++|+.||+.|.--++.+++ .|+||+++|+-.     .+.++|..|.+.|. +.-.-.
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr-AGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAs  337 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR-AGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKAS  337 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCccccccccc-ccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhh
Confidence            37889999999999999999999999999988766689999 999999998853     45778888887754 334456


Q ss_pred             CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCC
Q 041107           87 DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNIS  166 (374)
Q Consensus        87 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t  166 (374)
                      ..|+|+|++|+.+|+.++++.|+    .+|+++|.+|.+|.|+|+.||..||.++++.| |   -.+++|....|.+|-|
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LL----acgAdVNiQDdDGSTALMCA~EHGhkEivklL-L---A~p~cd~sLtD~DgST  409 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALL----ACGADVNIQDDDGSTALMCAAEHGHKEIVKLL-L---AVPSCDISLTDVDGST  409 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHH----HccCCCccccCCccHHHhhhhhhChHHHHHHH-h---ccCcccceeecCCCch
Confidence            78999999999999999999999    99999999999999999999999999999887 7   8899999999999999


Q ss_pred             hHHHHHhCCCc
Q 041107          167 AEHIYRYGFPD  177 (374)
Q Consensus       167 ~l~~a~~~~~~  177 (374)
                      +|.+|-..++.
T Consensus       410 Al~IAleagh~  420 (452)
T KOG0514|consen  410 ALSIALEAGHR  420 (452)
T ss_pred             hhhhHHhcCch
Confidence            99999776665

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.7e-22  Score=170.57  Aligned_cols=146  Identities=10%  Similarity=0.017  Sum_probs=126.5

Q ss_pred             CccccccCCCCCcHHHHHHHcCCH----HHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHH---HHHHHHhCCCcc
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRC----FISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWM---VQEIIDHCPECC   82 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~---v~~Ll~~~~~~~   82 (374)
                      +.+++..+.++.++||.||+.|+.    +++++|++.++.+ +.+|. .|+||||+|+..|+.+.   +++|++.|+++ 
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-   86 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDH-HGRQCTHMVAWYDRANAVMKIELLVNMGADI-   86 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCC-CCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-
Confidence            456677888999999999999997    6666778888887 88898 99999999999988654   89999999997 


Q ss_pred             cccc-CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           83 EVVD-DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        83 ~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                      +.+| ..|+||||+|+.+++.+++++|++   +.+.+++.+|.+|+||||+|+..++...+..|     +..|++++..+
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~---~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~L-----l~~ga~~~~~~  158 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCR---QLGVNLGAINYQHETAYHIAYKMRDRRMMEIL-----RANGAVCDDPL  158 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHh---ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCCcc
Confidence            7777 589999999999999999999973   26889999999999999999999886666655     88999999999


Q ss_pred             CCCCC
Q 041107          162 KQNIS  166 (374)
Q Consensus       162 ~~g~t  166 (374)
                      ..|.+
T Consensus       159 ~~~~~  163 (166)
T PHA02743        159 SIGLS  163 (166)
T ss_pred             cCCcc
Confidence            88754

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=6.1e-22  Score=195.89  Aligned_cols=182  Identities=16%  Similarity=0.114  Sum_probs=132.2

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcC------CHHHHHHHhhcCCcccccccCCCCchHHHHHHHc---CCHHHHH
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLD------RCFISKCLLEADKSAALISDEDRKMTALHLAAGR---GDVWMVQ   72 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g------~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~---g~~~~v~   72 (374)
                      ++.|++ .++++|.++ .|.||||.|+..+      +.+++++|+++|+++ +.+|. .|.||||.|+..   |+.++++
T Consensus        53 v~~Ll~-~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~-~g~tpL~~a~~~~~~~~~eiv~  128 (494)
T PHA02989         53 VKLLID-NGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTF-NGVSPIVCFIYNSNINNCDMLR  128 (494)
T ss_pred             HHHHHH-cCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHhcccCcHHHHH
Confidence            344444 567788776 5789999887654      468899999999998 88888 899999987754   6789999


Q ss_pred             HHHHhCCCccccccCCCCcHHHHHHHh--ccHHHHHhHHhhcccchhhhcc-cCCCCCcHHHHHHhhc----ccccccee
Q 041107           73 EIIDHCPECCEVVDDRGWNVLHFAMVS--FYARDLKHLVDKYPAVRNLIFK-KDVKGNTPFHVLAAVC----RQSYDARY  145 (374)
Q Consensus        73 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--~~~~~~~~Ll~~~~~~~~~~n~-~d~~G~T~LH~A~~~g----~~~~~~~l  145 (374)
                      +|+++|+++.+..|..|+||||+|+..  ++.+++++|+    +.|++++. .|..|.||||+|++.+    +.+.++.|
T Consensus       129 ~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll----~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~L  204 (494)
T PHA02989        129 FLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL----SFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYL  204 (494)
T ss_pred             HHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH----HcCCCccccccccCCChHHHHHhcccccccHHHHHHH
Confidence            999999886467888999999998765  5788999998    77888887 6788899999887653    22222222


Q ss_pred             ---------------------------------eeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107          146 ---------------------------------DIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSG  192 (374)
Q Consensus       146 ---------------------------------~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~  192 (374)
                                                       .++.++..|+++|.+|..|+||+|+|...+..   ++.+.|.+.|+.
T Consensus       205 l~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~---~~v~~LL~~Gad  281 (494)
T PHA02989        205 IKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNY---EAFNYLLKLGDD  281 (494)
T ss_pred             HhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCH---HHHHHHHHcCCC
Confidence                                             00001233456667777888888888776655   677777776665


Q ss_pred             CC
Q 041107          193 QY  194 (374)
Q Consensus       193 ~~  194 (374)
                      ..
T Consensus       282 in  283 (494)
T PHA02989        282 IY  283 (494)
T ss_pred             cc
Confidence            43

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=4.3e-22  Score=168.72  Aligned_cols=128  Identities=13%  Similarity=0.090  Sum_probs=110.5

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHhh------cCCcccccccCCCCchHHHHHHHcCC----HHHHHHHHHhCCCc
Q 041107           12 LTRERDRHGWTPLHYAVYLDRCFISKCLLE------ADKSAALISDEDRKMTALHLAAGRGD----VWMVQEIIDHCPEC   81 (374)
Q Consensus        12 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~------~~~~~~~~~d~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~   81 (374)
                      +++.+|..|.||||+|++.|+.++++.|+.      .++++ +.+|. .|+||||+|+..|+    .++++.|++.++++
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~-~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDD-AGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCC-CCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            567788999999999999999999999864      24666 88898 99999999999998    58899999999996


Q ss_pred             cccccC-CCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           82 CEVVDD-RGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        82 ~~~~d~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                       +.+|. +|+||||+|+.+++.+++++|++   ..+.+++.+|.+|+||||+|+..++...+..|
T Consensus        91 -n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~---~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L  151 (169)
T PHA02741         91 -NAQEMLEGDTALHLAAHRRDHDLAEWLCC---QPGIDLHFCNADNKSPFELAIDNEDVAMMQIL  151 (169)
T ss_pred             -CCCCcCCCCCHHHHHHHcCCHHHHHHHHh---CCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHH
Confidence             67774 89999999999999999999982   24788999999999999999999876665544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=3.4e-22  Score=160.62  Aligned_cols=143  Identities=22%  Similarity=0.127  Sum_probs=130.1

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHH
Q 041107           24 LHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYAR  103 (374)
Q Consensus        24 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  103 (374)
                      +-+|+..+....|+.||+..++.++.+|. +|+||||-|+.+|+.+|++.|+.+|++. +.+...|+||||-||+..+.+
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhcccccccccc-ccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            57899999999999999999999999999 9999999999999999999999999996 899999999999999999999


Q ss_pred             HHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccc-eeeeccccccccccccccCCCCChHHHHHhCCC
Q 041107          104 DLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDA-RYDIVPWKIAKAHFQATNKQNISAEHIYRYGFP  176 (374)
Q Consensus       104 ~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~-~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~  176 (374)
                      ++..|+    +.|+++|++...-.||||+||...+..... .| |   ...++++...|+.+.||+++|++.+.
T Consensus       145 va~~LL----qhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~L-l---~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  145 VAGRLL----QHGADVNAQTKGLLTPLHLAAGNRNSRDTLELL-L---HDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HHHHHH----hccCcccccccccchhhHHhhcccchHHHHHHH-h---hccccChhhhcCccchHHHHHHHhhh
Confidence            999998    899999999999999999999875532222 44 5   78899999999999999999987643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=1.4e-21  Score=203.68  Aligned_cols=163  Identities=15%  Similarity=0.074  Sum_probs=144.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 041107           16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHF   95 (374)
Q Consensus        16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   95 (374)
                      .+.++.++||.||..|+.++++.|++.|+++ +..|. .|+||||+||..|+.++++.|+++|+++ +.+|.+|+||||.
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~  597 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDS-KGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWN  597 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHH
Confidence            3456789999999999999999999999999 99999 9999999999999999999999999996 8899999999999


Q ss_pred             HHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCC
Q 041107           96 AMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGF  175 (374)
Q Consensus        96 A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~  175 (374)
                      |+..|+.+++++|+    +.+...+  +..|.++||.|+..|+...++.|     ++.|+|+|..|.+|.||+|+|...+
T Consensus       598 A~~~g~~~iv~~L~----~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~L-----l~~Gadin~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        598 AISAKHHKIFRILY----HFASISD--PHAAGDLLCTAAKRNDLTAMKEL-----LKQGLNVDSEDHQGATALQVAMAED  666 (823)
T ss_pred             HHHhCCHHHHHHHH----hcCcccC--cccCchHHHHHHHhCCHHHHHHH-----HHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            99999999999997    4444333  35678999999999987777766     8999999999999999999998877


Q ss_pred             CccHHHHHHHHHhcCCCCCC
Q 041107          176 PDLEQEIQELSKADGSGQYP  195 (374)
Q Consensus       176 ~~~~~~i~~~l~~~~~~~~~  195 (374)
                      +.   ++.++|.+.|+....
T Consensus       667 ~~---~iv~~Ll~~GAdv~~  683 (823)
T PLN03192        667 HV---DMVRLLIMNGADVDK  683 (823)
T ss_pred             cH---HHHHHHHHcCCCCCC
Confidence            76   888888888776543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.87  E-value=1e-22  Score=169.68  Aligned_cols=164  Identities=16%  Similarity=0.091  Sum_probs=142.1

Q ss_pred             hCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 041107            8 KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDD   87 (374)
Q Consensus         8 ~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   87 (374)
                      .++...|+.+-.+++|+.+++.+.+.+.+..+.++.   .+.+|+ .|.|||.||+..|+.++|++|++.|+++ ....+
T Consensus       117 tN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De-~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk  191 (296)
T KOG0502|consen  117 TNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDE-FGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGK  191 (296)
T ss_pred             cccccCCccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccc-cCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhh
Confidence            345667888888999999999999888877766543   367888 9999999999999999999999999996 78888


Q ss_pred             CCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCCh
Q 041107           88 RGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISA  167 (374)
Q Consensus        88 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~  167 (374)
                      ...++|.+|+..|+.+++++|+    .++.++|.-|.+|-|||-+|++-++...++.|     +..|+|++..+..|.++
T Consensus       192 ~resALsLAt~ggytdiV~lLL----~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~L-----l~sGAd~t~e~dsGy~~  262 (296)
T KOG0502|consen  192 YRESALSLATRGGYTDIVELLL----TREVDVNVYDWNGGTPLLYAVRGNHVKCVESL-----LNSGADVTQEDDSGYWI  262 (296)
T ss_pred             hhhhhHhHHhcCChHHHHHHHH----hcCCCcceeccCCCceeeeeecCChHHHHHHH-----HhcCCCcccccccCCcH
Confidence            8999999999999999999998    88889999999999999999998887777777     89999999999999999


Q ss_pred             HHHHHhCCCccHHHHHHH
Q 041107          168 EHIYRYGFPDLEQEIQEL  185 (374)
Q Consensus       168 l~~a~~~~~~~~~~i~~~  185 (374)
                      +++|...++..++.+++.
T Consensus       263 mdlAValGyr~Vqqvie~  280 (296)
T KOG0502|consen  263 MDLAVALGYRIVQQVIEK  280 (296)
T ss_pred             HHHHHHhhhHHHHHHHHH
Confidence            999988888777777764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.86  E-value=1.5e-22  Score=168.58  Aligned_cols=148  Identities=17%  Similarity=0.144  Sum_probs=131.5

Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 041107            9 KKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR   88 (374)
Q Consensus         9 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   88 (374)
                      ..+.+|..|+.|.|||.+|+.+|++++|++||+.|+++ +...+ +..++|.+|++.|..++|+.|+.+++++ +.-|.+
T Consensus       149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk-~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwN  225 (296)
T KOG0502|consen  149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGK-YRESALSLATRGGYTDIVELLLTREVDV-NVYDWN  225 (296)
T ss_pred             hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhh-hhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccC
Confidence            45678999999999999999999999999999999998 88777 8889999999999999999999999997 888999


Q ss_pred             CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChH
Q 041107           89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAE  168 (374)
Q Consensus        89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l  168 (374)
                      |-|||-+|++.++.++++.|+    +.|++++..|..|++++.+|+..|+. +++..     +++-++.+.+|+.-+||+
T Consensus       226 GgTpLlyAvrgnhvkcve~Ll----~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqv-----ie~h~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  226 GGTPLLYAVRGNHVKCVESLL----NSGADVTQEDDSGYWIMDLAVALGYR-IVQQV-----IEKHALKLCQDSEKRTPL  295 (296)
T ss_pred             CCceeeeeecCChHHHHHHHH----hcCCCcccccccCCcHHHHHHHhhhH-HHHHH-----HHHHHHHHhhcccCCCCC
Confidence            999999999999999999998    88999999999999999999999985 55555     677788888888877776


Q ss_pred             H
Q 041107          169 H  169 (374)
Q Consensus       169 ~  169 (374)
                      |
T Consensus       296 ~  296 (296)
T KOG0502|consen  296 H  296 (296)
T ss_pred             C
Confidence            4

>PHA02917 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=189.64  Aligned_cols=178  Identities=13%  Similarity=0.053  Sum_probs=139.1

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcC-----------------------------------CHHHHHHHhhcCCcc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLD-----------------------------------RCFISKCLLEADKSA   46 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g-----------------------------------~~~~v~~Ll~~~~~~   46 (374)
                      ++.|| ..+++++.+|.+|+||||+|+..|                                   +.++|++|+++|+++
T Consensus        51 v~~Ll-~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadi  129 (661)
T PHA02917         51 VKLLL-DSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDL  129 (661)
T ss_pred             HHHHH-HCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCC
Confidence            44455 467788899999999999888644                                   457788888889998


Q ss_pred             cccccCCCCchHHHHHH--HcCCHHHHHHHHHhCCCcccccc---CCC-----------CcHHHHHHH-----------h
Q 041107           47 ALISDEDRKMTALHLAA--GRGDVWMVQEIIDHCPECCEVVD---DRG-----------WNVLHFAMV-----------S   99 (374)
Q Consensus        47 ~~~~d~~~g~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d---~~g-----------~t~Lh~A~~-----------~   99 (374)
                       +.+|. .|+||||.|+  .+|+.+++++|+++|+++ +..|   ..|           .||||+|+.           +
T Consensus       130 -n~~d~-~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~  206 (661)
T PHA02917        130 -SVKCE-NHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAY  206 (661)
T ss_pred             -CccCC-CCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhccccccccccc
Confidence             88999 9999999643  578999999999999987 3333   234           699999986           4


Q ss_pred             ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccc--ccceeeeccccccccccc----cccCCCCChHHHHHh
Q 041107          100 FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQS--YDARYDIVPWKIAKAHFQ----ATNKQNISAEHIYRY  173 (374)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~--~~~~l~L~~~l~~g~~~~----~~n~~g~t~l~~a~~  173 (374)
                      ++.+++++|+    +.|+++|.+|.+|+||||+|++.|+..  +++.|     + .|++++    ..|..|.+|++++..
T Consensus       207 ~~~eiv~~Li----~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~L-----i-~g~d~~~~~~~~~~~~~~~~~~a~y  276 (661)
T PHA02917        207 VRPEVVKCLI----NHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLL-----M-KGIDNTAYSYIDDLTCCTRGIMADY  276 (661)
T ss_pred             CcHHHHHHHH----HCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHH-----H-hCCcccccccccCcccccchHHHHH
Confidence            6889999999    889999999999999999999998753  44333     4 487775    466678888888763


Q ss_pred             ------CCCccHHHHHHHHHhcCCCC
Q 041107          174 ------GFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       174 ------~~~~~~~~i~~~l~~~~~~~  193 (374)
                            .......++++.|.+.|+..
T Consensus       277 l~~~~~~~~~v~~~iv~~Li~~Ga~~  302 (661)
T PHA02917        277 LNSDYRYNKDVDLDLVKLFLENGKPH  302 (661)
T ss_pred             HHhhccccccchHHHHHHHHhCCCCC
Confidence                  12233568899999988754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=2e-21  Score=181.43  Aligned_cols=159  Identities=24%  Similarity=0.222  Sum_probs=141.4

Q ss_pred             HHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 041107            3 LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC   82 (374)
Q Consensus         3 ~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   82 (374)
                      +.+|..+ ...+..+.+|.|+||-+|...+.++|++|+++|+++ +..|. +||||||.|+..|+..++++|+++|++..
T Consensus        57 ~~ll~~g-a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~-e~wtPlhaaascg~~~i~~~li~~gA~~~  133 (527)
T KOG0505|consen   57 RKLLNRG-ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDN-EGWTPLHAAASCGYLNIVEYLIQHGANLL  133 (527)
T ss_pred             HHHhccC-CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-ccccc-ccCCcchhhcccccHHHHHHHHHhhhhhh
Confidence            4455544 556999999999999999999999999999999999 99999 99999999999999999999999887421


Q ss_pred             ----------------------------------------------------------ccccCCCCcHHHHHHHhccHHH
Q 041107           83 ----------------------------------------------------------EVVDDRGWNVLHFAMVSFYARD  104 (374)
Q Consensus        83 ----------------------------------------------------------~~~d~~g~t~Lh~A~~~~~~~~  104 (374)
                                                                                ...+.+|.|.||+|+.+|+.++
T Consensus       134 avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~  213 (527)
T KOG0505|consen  134 AVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEV  213 (527)
T ss_pred             hccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHH
Confidence                                                                      2244559999999999999999


Q ss_pred             HHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107          105 LKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY  173 (374)
Q Consensus       105 ~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~  173 (374)
                      .++|+    ..|..++.+|.+|+||||.|+..|....+. + |   .++|++.+..++.|.||++++..
T Consensus       214 ~~lLl----~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~e-l-L---~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  214 AALLL----QAGYSVNIKDYDGWTPLHAAAHWGQEDACE-L-L---VEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHH----HhccCcccccccCCCcccHHHHhhhHhHHH-H-H---HHhhcccchhhhcCCCCccchhh
Confidence            99999    889999999999999999999999766666 5 5   89999999999999999999844

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=3.5e-21  Score=197.45  Aligned_cols=173  Identities=23%  Similarity=0.227  Sum_probs=138.3

Q ss_pred             HHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccc
Q 041107            5 LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEV   84 (374)
Q Consensus         5 lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~   84 (374)
                      ++...+..+|..-+.|.||||.|++.|+.++++.|++.++.. +...+ .|.+++|.|+..+...+++.++++|..+ ..
T Consensus       459 ~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~-~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~  535 (1143)
T KOG4177|consen  459 LLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAK-KGLTPLHLAADEDTVKVAKILLEHGANV-DL  535 (1143)
T ss_pred             hHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-Cccch-hccchhhhhhhhhhHHHHHHHhhcCCce-eh
Confidence            345566777777777788888888888877777777776555 55555 7777777777777777777777777776 78


Q ss_pred             ccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCC
Q 041107           85 VDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQN  164 (374)
Q Consensus        85 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g  164 (374)
                      ++.+|.||||.||..|+.++|++|+    +.|++++.+|+.|+||||.||..|+..+...|     ++.|+++|..|.+|
T Consensus       536 ~~~r~~TpLh~A~~~g~v~~VkfLL----e~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LL-----lk~GA~vna~d~~g  606 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHYGNVDLVKFLL----EHGADVNAKDKLGYTPLHQAAQQGHNDIAELL-----LKHGASVNAADLDG  606 (1143)
T ss_pred             hcccccchHHHHHhcCCchHHHHhh----hCCccccccCCCCCChhhHHHHcChHHHHHHH-----HHcCCCCCcccccC
Confidence            8889999999999999999999998    88999999999999999999999976666554     89999999999999


Q ss_pred             CChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107          165 ISAEHIYRYGFPDLEQEIQELSKADGSG  192 (374)
Q Consensus       165 ~t~l~~a~~~~~~~~~~i~~~l~~~~~~  192 (374)
                      .||+++|.+.++-   .+.+.++..++.
T Consensus       607 ~TpL~iA~~lg~~---~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  607 FTPLHIAVRLGYL---SVVKLLKVVTAT  631 (1143)
T ss_pred             cchhHHHHHhccc---chhhHHHhccCc
Confidence            9999999877665   455555554443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=2.5e-21  Score=161.60  Aligned_cols=136  Identities=13%  Similarity=0.076  Sum_probs=109.3

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHhhcC------CcccccccCCCCchHHHHHHHcCCH---HHHHHHHHhCCCc
Q 041107           11 SLTRERDRHGWTPLHYAVYLDRCFISKCLLEAD------KSAALISDEDRKMTALHLAAGRGDV---WMVQEIIDHCPEC   81 (374)
Q Consensus        11 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~------~~~~~~~d~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~   81 (374)
                      ...+.+|.+|.||||+|++.|+.  +..+...+      ......+|. +|+||||+|+..|+.   ++++.|++.|+++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNR-HGKQCVHIVSNPDKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcC-CCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence            34677899999999999999984  33332221      112245687 999999999999987   4688999999997


Q ss_pred             ccccc-CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccc
Q 041107           82 CEVVD-DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQ  158 (374)
Q Consensus        82 ~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~  158 (374)
                       +.+| ..|+||||+|+..++.+++++|++   ..+.++|.+|..|.||||+|+..|+...+..|     +..|++.+
T Consensus        85 -n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~---~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~L-----l~~ga~~~  153 (154)
T PHA02736         85 -NGKERVFGNTPLHIAVYTQNYELATWLCN---QPGVNMEILNYAFKTPYYVACERHDAKMMNIL-----RAKGAQCK  153 (154)
T ss_pred             -cccCCCCCCcHHHHHHHhCCHHHHHHHHh---CCCCCCccccCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCC
Confidence             6776 599999999999999999999982   24789999999999999999999887666655     67777654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2.9e-20  Score=169.20  Aligned_cols=142  Identities=11%  Similarity=0.087  Sum_probs=118.6

Q ss_pred             ccccCCCCCcH-HHHHHHcCCHHHHHHHhhcCCcccccc----cCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccc-c
Q 041107           13 TRERDRHGWTP-LHYAVYLDRCFISKCLLEADKSAALIS----DEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVV-D   86 (374)
Q Consensus        13 ~~~~d~~g~Tp-Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~----d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d   86 (374)
                      +..+|..|+|+ ||.|++.|+.++++.|+++|+++ +.+    +. .|.||||+|+..|+.+++++|+++|+++ +.. +
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~-~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~  101 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSEN-SKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAE  101 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccC
Confidence            45678888865 56677779999999999999999 776    45 8999999999999999999999999997 554 5


Q ss_pred             CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCC
Q 041107           87 DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNIS  166 (374)
Q Consensus        87 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t  166 (374)
                      ..|.||||.|+.+++.+++++|+    ..|+++|.+|.+|.||||+|++.++..... +      ..|..   .+..+.+
T Consensus       102 ~~g~TpLh~Aa~~~~~eivklLL----~~GAdin~kd~~G~TpL~~A~~~~~~~~~~-~------~~~~~---~~~~~~~  167 (300)
T PHA02884        102 EAKITPLYISVLHGCLKCLEILL----SYGADINIQTNDMVTPIELALMICNNFLAF-M------ICDNE---ISNFYKH  167 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHhCChhHHH-H------hcCCc---ccccccC
Confidence            68999999999999999999998    889999999999999999999987654332 2      12322   4666778


Q ss_pred             hHHHH
Q 041107          167 AEHIY  171 (374)
Q Consensus       167 ~l~~a  171 (374)
                      |.+..
T Consensus       168 ~~~~~  172 (300)
T PHA02884        168 PKKIL  172 (300)
T ss_pred             hhhhh
Confidence            88865

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=3.7e-21  Score=176.56  Aligned_cols=161  Identities=17%  Similarity=0.044  Sum_probs=138.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhh-cCCcccccccC-------CCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 041107           17 DRHGWTPLHYAVYLDRCFISKCLLE-ADKSAALISDE-------DRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR   88 (374)
Q Consensus        17 d~~g~TpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~-------~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   88 (374)
                      +.+|.|||-+||+.||.++|++|++ .++++ .....       -+|-+||-.|+..||.++|+.|+++++++ +.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~-e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASP-EQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCc-cCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-cccccc
Confidence            5689999999999999999999999 45544 22111       37889999999999999999999999886 666667


Q ss_pred             CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChH
Q 041107           89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAE  168 (374)
Q Consensus        89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l  168 (374)
                      .-|||--||.-|+.+++++|+    +.+++++..|..|+|.||+||..|+.++++.|     ++.|+|+|.++.+|+|+|
T Consensus       117 NStPLraACfDG~leivKyLv----E~gad~~IanrhGhTcLmIa~ykGh~~I~qyL-----le~gADvn~ks~kGNTAL  187 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLV----EHGADPEIANRHGHTCLMIACYKGHVDIAQYL-----LEQGADVNAKSYKGNTAL  187 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHH----HcCCCCcccccCCCeeEEeeeccCchHHHHHH-----HHhCCCcchhcccCchHH
Confidence            779999999999999999999    88999999999999999999999998888766     899999999999999999


Q ss_pred             HHHHhCCCccHHHHHHHHHhcCC
Q 041107          169 HIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       169 ~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                      |.+++.++-   ++++.+.+.++
T Consensus       188 H~caEsG~v---divq~Ll~~ga  207 (615)
T KOG0508|consen  188 HDCAESGSV---DIVQLLLKHGA  207 (615)
T ss_pred             HhhhhcccH---HHHHHHHhCCc
Confidence            998776665   66666665444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.7e-21  Score=167.35  Aligned_cols=149  Identities=17%  Similarity=0.205  Sum_probs=108.5

Q ss_pred             HHcCCHHHHHHHhhc-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHH
Q 041107           28 VYLDRCFISKCLLEA-DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLK  106 (374)
Q Consensus        28 a~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  106 (374)
                      |+.|+.--|+.-|+. ..|. +.-|. .|.+|||+||+.|+..+++.|+.+|+.+ +..+....||||+|+.+|+.++++
T Consensus         8 cregna~qvrlwld~tehdl-n~gdd-hgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDL-NVGDD-HGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCccccc-ccccc-cCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHH
Confidence            344554444544543 3344 77777 8888888888888888888888888876 677777778888888888888888


Q ss_pred             hHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHH
Q 041107          107 HLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELS  186 (374)
Q Consensus       107 ~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l  186 (374)
                      .|+    +..+++|+.++.|||||||||..|+..+.+-|     +..|+.+++.|++|.||++.|...   ..+.+.+.-
T Consensus        85 kll----~~kadvnavnehgntplhyacfwgydqiaedl-----i~~ga~v~icnk~g~tpldkakp~---l~~~l~e~a  152 (448)
T KOG0195|consen   85 KLL----SRKADVNAVNEHGNTPLHYACFWGYDQIAEDL-----ISCGAAVNICNKKGMTPLDKAKPM---LKNTLLEIA  152 (448)
T ss_pred             HHH----HHhcccchhhccCCCchhhhhhhcHHHHHHHH-----HhccceeeecccCCCCchhhhchH---HHHHHHHHH
Confidence            887    77788888888888888888888876666665     788888888888888888887332   223444444


Q ss_pred             HhcCC
Q 041107          187 KADGS  191 (374)
Q Consensus       187 ~~~~~  191 (374)
                      ++.|.
T Consensus       153 ek~gq  157 (448)
T KOG0195|consen  153 EKHGQ  157 (448)
T ss_pred             HHhCC
Confidence            44443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=3.6e-20  Score=149.02  Aligned_cols=130  Identities=21%  Similarity=0.175  Sum_probs=117.2

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      |+.||+..+..+|.+|.+|+||||-|++.|+.++|+.|+..|++. +.+.. .||||||.||.-.+.+++..|+++|+++
T Consensus        79 V~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~-~GWTPLhSAckWnN~~va~~LLqhgaDV  156 (228)
T KOG0512|consen   79 VQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTN-EGWTPLHSACKWNNFEVAGRLLQHGADV  156 (228)
T ss_pred             HHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccc-cCccchhhhhcccchhHHHHHHhccCcc
Confidence            688999999999999999999999999999999999999999999 88988 9999999999999999999999999997


Q ss_pred             cccccCCCCcHHHHHHHhc-cHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhc
Q 041107           82 CEVVDDRGWNVLHFAMVSF-YARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC  137 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~-~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g  137 (374)
                       +...+...||||+||.+. ....+++|+.   .....+..++..|.||+.+|-+.+
T Consensus       157 -nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~---dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  157 -NAQTKGLLTPLHLAAGNRNSRDTLELLLH---DRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             -cccccccchhhHHhhcccchHHHHHHHhh---ccccChhhhcCccchHHHHHHHhh
Confidence             888888999999999984 4556677752   455567778899999999998864

>PHA02795 ankyrin-like protein; Provisional

Probab=99.82  E-value=4.5e-20  Score=174.53  Aligned_cols=146  Identities=9%  Similarity=-0.038  Sum_probs=123.6

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccc-----cCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALIS-----DEDRKMTALHLAAGRGDVWMVQEIIDHC   78 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~   78 (374)
                      ++|..+|++++..  ++.||||.|+..|+.+++++|+++|++..+..     +. .|.+|+|.|+..++.+++++|+++|
T Consensus       135 ~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~-~~~t~l~~a~~~~~~eIve~LIs~G  211 (437)
T PHA02795        135 DFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKI-IQYTRGFLVDEPTVLEIYKLCIPYI  211 (437)
T ss_pred             HHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhh-hccchhHHHHhcCHHHHHHHHHhCc
Confidence            3444567778774  45899999999999999999999998552332     13 5789999999999999999999999


Q ss_pred             CCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcc--------ccccceeeeccc
Q 041107           79 PECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCR--------QSYDARYDIVPW  150 (374)
Q Consensus        79 ~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~--------~~~~~~l~L~~~  150 (374)
                      +++ +.+|..|+||||+|+.+|+.+++++|+    +.|+++|.+|.+|+||||+|+..|+        ..+++.|     
T Consensus       212 ADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL----~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelL-----  281 (437)
T PHA02795        212 EDI-NQLDAGGRTLLYRAIYAGYIDLVSWLL----ENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEIL-----  281 (437)
T ss_pred             CCc-CcCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHH-----
Confidence            997 889999999999999999999999999    8899999999999999999999884        2345544     


Q ss_pred             cccccccccccC
Q 041107          151 KIAKAHFQATNK  162 (374)
Q Consensus       151 l~~g~~~~~~n~  162 (374)
                      ++.|++++....
T Consensus       282 L~~gadI~~~~~  293 (437)
T PHA02795        282 LREPLSIDCIKL  293 (437)
T ss_pred             HhCCCCCCchhH
Confidence            788888876543

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=5.9e-20  Score=155.63  Aligned_cols=128  Identities=16%  Similarity=0.133  Sum_probs=107.3

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHh------CCCccccccCCCCcHHHHHHHhcc----HHHHHhHHhhcccchh
Q 041107           48 LISDEDRKMTALHLAAGRGDVWMVQEIIDH------CPECCEVVDDRGWNVLHFAMVSFY----ARDLKHLVDKYPAVRN  117 (374)
Q Consensus        48 ~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~  117 (374)
                      +.+|. .|.||||+|++.|+.++++.|+..      +++ .+.+|..|+||||+|+.+++    .+++++|+    +.|+
T Consensus        15 ~~~~~-~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll----~~ga   88 (169)
T PHA02741         15 AEKNS-EGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLI----ELGA   88 (169)
T ss_pred             hcccc-CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHH----HcCC
Confidence            45667 999999999999999999998653      344 47889999999999999988    47788887    7889


Q ss_pred             hhcccCC-CCCcHHHHHHhhccccccceeeeccccc-cccccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          118 LIFKKDV-KGNTPFHVLAAVCRQSYDARYDIVPWKI-AKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       118 ~~n~~d~-~G~T~LH~A~~~g~~~~~~~l~L~~~l~-~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      ++|.+|. +|+||||+|++.++.+.++.|     +. .|++++..|.+|+||+++|...+..   ++.+.+.+.
T Consensus        89 din~~~~~~g~TpLh~A~~~~~~~iv~~L-----l~~~g~~~~~~n~~g~tpL~~A~~~~~~---~iv~~L~~~  154 (169)
T PHA02741         89 DINAQEMLEGDTALHLAAHRRDHDLAEWL-----CCQPGIDLHFCNADNKSPFELAIDNEDV---AMMQILREI  154 (169)
T ss_pred             CCCCCCcCCCCCHHHHHHHcCCHHHHHHH-----HhCCCCCCCcCCCCCCCHHHHHHHCCCH---HHHHHHHHH
Confidence            9999995 999999999999987777766     54 6999999999999999999887765   555555543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.81  E-value=4.9e-20  Score=189.09  Aligned_cols=162  Identities=24%  Similarity=0.245  Sum_probs=146.5

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCE   83 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~   83 (374)
                      .++.+.....+...+.|-|+||.|...++..+++.++++|+++ +.++. .|.||||.|+..|+.++|++|+++++++ +
T Consensus       491 ~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~-r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~  567 (1143)
T KOG4177|consen  491 QLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANV-DLRTG-RGYTPLHVAVHYGNVDLVKFLLEHGADV-N  567 (1143)
T ss_pred             HHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCce-ehhcc-cccchHHHHHhcCCchHHHHhhhCCccc-c
Confidence            4556666667777788999999999999999999999999999 99999 9999999999999999999999999997 8


Q ss_pred             cccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc-----cc
Q 041107           84 VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH-----FQ  158 (374)
Q Consensus        84 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~-----~~  158 (374)
                      .+|+.|+||||.||..|+.+++++|+    +.|+.+|..|.+|+||||.|++.|+...++.+     ...+.+     ..
T Consensus       568 ak~~~G~TPLH~Aa~~G~~~i~~LLl----k~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l-----~~~~~~~~~~~~~  638 (1143)
T KOG4177|consen  568 AKDKLGYTPLHQAAQQGHNDIAELLL----KHGASVNAADLDGFTPLHIAVRLGYLSVVKLL-----KVVTATPAATDPV  638 (1143)
T ss_pred             ccCCCCCChhhHHHHcChHHHHHHHH----HcCCCCCcccccCcchhHHHHHhcccchhhHH-----HhccCccccccch
Confidence            88999999999999999999999999    89999999999999999999999998887755     566666     88


Q ss_pred             cccCCCCChHHHHHhCCCc
Q 041107          159 ATNKQNISAEHIYRYGFPD  177 (374)
Q Consensus       159 ~~n~~g~t~l~~a~~~~~~  177 (374)
                      ..+..|.+|.++.+....+
T Consensus       639 ~e~~~g~~p~~v~e~~~~~  657 (1143)
T KOG4177|consen  639 KENRKGAVPEDVAEELDTD  657 (1143)
T ss_pred             hhhhcccChhhHHHHhhhh
Confidence            8899999999998654433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.80  E-value=3.9e-19  Score=175.86  Aligned_cols=178  Identities=13%  Similarity=0.009  Sum_probs=139.3

Q ss_pred             HHHhhCCccccccCCCCCcHHHH--HHHcCCHHHHHHHhh--------------------------------cCCccccc
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHY--AVYLDRCFISKCLLE--------------------------------ADKSAALI   49 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~--Aa~~g~~~~v~~Ll~--------------------------------~~~~~~~~   49 (374)
                      ++|...++++|.+|.+|+||||+  |+..|+.|+|++|++                                +|.+. +.
T Consensus       219 ~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i  297 (672)
T PHA02730        219 KCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EI  297 (672)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HH
Confidence            55666779999999999999995  556688999999999                                67776 44


Q ss_pred             --------------------ccCCCCch---------------------HHHHHHHcC---CHHHHHHHHHhCCCccccc
Q 041107           50 --------------------SDEDRKMT---------------------ALHLAAGRG---DVWMVQEIIDHCPECCEVV   85 (374)
Q Consensus        50 --------------------~d~~~g~t---------------------pLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~   85 (374)
                                          .+. .|.+                     -||.-.+.|   +.+++++|+++|+++ +. 
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~-~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~-  374 (672)
T PHA02730        298 VNLLIEGRHTLIDVMRSITSYDS-REYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-DK-  374 (672)
T ss_pred             HHHHhhccCcchhhhhccccccc-cccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-Cc-
Confidence                                444 5554                     677666655   689999999999997 44 


Q ss_pred             cCCCCcHHHHHHHhcc----HHHHHhHHhhcccchh--hhcccCCCCCcHHHH---HHhhcc----ccc----cceeeec
Q 041107           86 DDRGWNVLHFAMVSFY----ARDLKHLVDKYPAVRN--LIFKKDVKGNTPFHV---LAAVCR----QSY----DARYDIV  148 (374)
Q Consensus        86 d~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~--~~n~~d~~G~T~LH~---A~~~g~----~~~----~~~l~L~  148 (374)
                      +..|+||||+|+.++.    .+++++|+    +.|+  ++|.+|.+|.||||.   |...+.    .+.    +..+ | 
T Consensus       375 k~~G~TpLH~Aa~~nnn~i~~eIvelLI----s~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~-L-  448 (672)
T PHA02730        375 TTDNNYPLHDYFVNNNNIVDVNVVRFIV----ENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDI-L-  448 (672)
T ss_pred             CCCCCcHHHHHHHHcCCcchHHHHHHHH----HcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHH-H-
Confidence            4799999999998874    89999999    6665  689999999999994   332221    111    1234 4 


Q ss_pred             cccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCCCC
Q 041107          149 PWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPD  196 (374)
Q Consensus       149 ~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~~~  196 (374)
                        +..|+++|.+|+.|+||+++|...+..   ++.++|.+.|+.....
T Consensus       449 --Is~GADINakD~~G~TPLh~Aa~~~~~---eive~LI~~GAdIN~~  491 (672)
T PHA02730        449 --SKYMDDIDMIDNENKTLLYYAVDVNNI---QFARRLLEYGASVNTT  491 (672)
T ss_pred             --HhcccchhccCCCCCCHHHHHHHhCCH---HHHHHHHHCCCCCCCC
Confidence              889999999999999999999877665   7888889888865443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.9e-19  Score=151.96  Aligned_cols=139  Identities=19%  Similarity=0.117  Sum_probs=115.0

Q ss_pred             cCCcccccccCCCCchHHHHHHHcCCH----HHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHH---HHhHHhhccc
Q 041107           42 ADKSAALISDEDRKMTALHLAAGRGDV----WMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD---LKHLVDKYPA  114 (374)
Q Consensus        42 ~~~~~~~~~d~~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~---~~~Ll~~~~~  114 (374)
                      ++.++ ...+. ++.+++|.||+.|+.    +++++|++.++.+ +..|.+|+||||+|+.+++.+.   +++|+    +
T Consensus         9 ~~~~~-~~~~~-~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll----~   81 (166)
T PHA02743          9 NNLGA-VEIDE-DEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLV----N   81 (166)
T ss_pred             cchHH-hhhcc-CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHH----H
Confidence            34555 55666 888999999999998    5666777777775 7889999999999999987654   78887    7


Q ss_pred             chhhhcccC-CCCCcHHHHHHhhccccccceeeecccc-ccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107          115 VRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWK-IAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSG  192 (374)
Q Consensus       115 ~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l-~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~  192 (374)
                      .|+++|.+| ..|+||||+|+..|+...++.|     + +.|++++.+|.+|+||+|+|...+..   ++++.|.+.++.
T Consensus        82 ~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~L-----l~~~gad~~~~d~~g~tpL~~A~~~~~~---~iv~~Ll~~ga~  153 (166)
T PHA02743         82 MGADINARELGTGNTLLHIAASTKNYELAEWL-----CRQLGVNLGAINYQHETAYHIAYKMRDR---RMMEILRANGAV  153 (166)
T ss_pred             cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH-----HhccCCCccCcCCCCCCHHHHHHHcCCH---HHHHHHHHcCCC
Confidence            899999998 5899999999999987776655     5 57999999999999999999877765   788888887776


Q ss_pred             CCC
Q 041107          193 QYP  195 (374)
Q Consensus       193 ~~~  195 (374)
                      ..+
T Consensus       154 ~~~  156 (166)
T PHA02743        154 CDD  156 (166)
T ss_pred             CCC
Confidence            543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=7.3e-20  Score=158.50  Aligned_cols=123  Identities=26%  Similarity=0.349  Sum_probs=115.3

Q ss_pred             HHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccc
Q 041107            5 LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEV   84 (374)
Q Consensus         5 lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~   84 (374)
                      -|+....+.|..|..|.+|||+||+.|+..+|+.|+.+|+.+ +..+- ...||||+|+..||.++|+.|+++.+|+ +.
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnm-gddtplhlaaahghrdivqkll~~kadv-na   95 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNM-GDDTPLHLAAAHGHRDIVQKLLSRKADV-NA   95 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccC-CCCcchhhhhhcccHHHHHHHHHHhccc-ch
Confidence            356667788999999999999999999999999999999999 88888 8889999999999999999999999997 89


Q ss_pred             ccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHH
Q 041107           85 VDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLA  134 (374)
Q Consensus        85 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~  134 (374)
                      ++..|+||||+||..|+..+.+-|+    ..|+.++..+++|.|||.-|-
T Consensus        96 vnehgntplhyacfwgydqiaedli----~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   96 VNEHGNTPLHYACFWGYDQIAEDLI----SCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhccCCCchhhhhhhcHHHHHHHHH----hccceeeecccCCCCchhhhc
Confidence            9999999999999999999999998    899999999999999998764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.79  E-value=8.5e-19  Score=173.49  Aligned_cols=178  Identities=17%  Similarity=0.103  Sum_probs=134.7

Q ss_pred             HHhhCCccccccCCCCCcHHHHHHHcC---CHHHHHHHhhcCCcccccccCCCCchHHHHHHHcC--CHHHHHHHHHhCC
Q 041107            5 LLDKKKSLTRERDRHGWTPLHYAVYLD---RCFISKCLLEADKSAALISDEDRKMTALHLAAGRG--DVWMVQEIIDHCP   79 (374)
Q Consensus         5 lL~~~~~~~~~~d~~g~TpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~   79 (374)
                      .++.+....+.+|.+|+||||+|+..|   +.++|++|+++|+++ +.+|. .|+||||+|+..|  +.|++++|++.|+
T Consensus        26 ~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~-~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~  103 (672)
T PHA02730         26 EIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNN-EGLTPLGVYSKRKYVKSQIVHLLISSYS  103 (672)
T ss_pred             HHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCC-CCCChHHHHHHcCCCcHHHHHHHHhcCC
Confidence            334432433488999999999999997   599999999999999 99999 9999999999976  7999999999965


Q ss_pred             Cc-cccccCCCCcHHHHHHH--hccHHHHHhHHhhcccchhhhcccCC-----CCCcHHHHHHhhccccccceeeecccc
Q 041107           80 EC-CEVVDDRGWNVLHFAMV--SFYARDLKHLVDKYPAVRNLIFKKDV-----KGNTPFHVLAAVCRQSYDARYDIVPWK  151 (374)
Q Consensus        80 ~~-~~~~d~~g~t~Lh~A~~--~~~~~~~~~Ll~~~~~~~~~~n~~d~-----~G~T~LH~A~~~g~~~~~~~l~L~~~l  151 (374)
                      +. .+..|..+.+|||.++.  +++.+++++|++   ..+.+++..++     .|-+|++++...++.++++.|     +
T Consensus       104 ~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~---~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklL-----i  175 (672)
T PHA02730        104 NASNELTSNINDFDLYSYMSSDNIDLRLLKYLIV---DKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWL-----L  175 (672)
T ss_pred             CCCcccccccCCchHHHHHHhcCCcHHHHHHHHH---hcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHH-----H
Confidence            32 25567779999999999  899999999983   24556665532     899999999999998888766     8


Q ss_pred             ccccccc-------cccCCCCCh-HHHHHhC---CCccHHHHHHHHHhcCCC
Q 041107          152 IAKAHFQ-------ATNKQNISA-EHIYRYG---FPDLEQEIQELSKADGSG  192 (374)
Q Consensus       152 ~~g~~~~-------~~n~~g~t~-l~~a~~~---~~~~~~~i~~~l~~~~~~  192 (374)
                      +.|++++       ..|..+.+| |++..-.   ......++.+.|.+.|+.
T Consensus       176 ~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad  227 (672)
T PHA02730        176 KSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS  227 (672)
T ss_pred             HcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC
Confidence            8899985       234444444 3322111   122345677777776664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.78  E-value=1.3e-17  Score=172.84  Aligned_cols=159  Identities=16%  Similarity=0.077  Sum_probs=124.6

Q ss_pred             hHHHHhh-CCccccccCCCCCcHHH-HHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcC---CHHHHHHHHH
Q 041107            2 PLLLLDK-KKSLTRERDRHGWTPLH-YAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRG---DVWMVQEIID   76 (374)
Q Consensus         2 ~~~lL~~-~~~~~~~~d~~g~TpLh-~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g---~~~~v~~Ll~   76 (374)
                      ++.+++. .+.++|..|..|+|||| .|+..++.++++.|++++.     ++. .|.||||.|+.++   ..++++.+..
T Consensus        33 v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~-~G~T~Lh~A~~~~~~~v~~ll~~l~~  106 (743)
T TIGR00870        33 VYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGA-VGDTLLHAISLEYVDAVEAILLHLLA  106 (743)
T ss_pred             HHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCC-cChHHHHHHHhccHHHHHHHHHHHhh
Confidence            4455654 25678889999999999 8888889999999999876     556 8999999999732   2334444444


Q ss_pred             hCCCc---------cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC--------------CCCCcHHHHH
Q 041107           77 HCPEC---------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD--------------VKGNTPFHVL  133 (374)
Q Consensus        77 ~~~~~---------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d--------------~~G~T~LH~A  133 (374)
                      .+++.         ....+..|.||||+|+.+++.+++++|+    +.|+++|.++              ..|+||||+|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL----~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~A  182 (743)
T TIGR00870       107 AFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLL----ERGASVPARACGDFFVKSQGVDSFYHGESPLNAA  182 (743)
T ss_pred             cccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHH----hCCCCCCcCcCCchhhcCCCCCcccccccHHHHH
Confidence            44321         1122357999999999999999999999    7788887653              3699999999


Q ss_pred             HhhccccccceeeeccccccccccccccCCCCChHHHHHhCC
Q 041107          134 AAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGF  175 (374)
Q Consensus       134 ~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~  175 (374)
                      +..|+.+.+..+     ++.|+|++.+|..|+||+|+|...+
T Consensus       183 a~~~~~~iv~lL-----l~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       183 ACLGSPSIVALL-----SEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             HHhCCHHHHHHH-----hcCCcchhhHhhhhhHHHHHHHhhh
Confidence            999987777655     8899999999999999999987654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=3.1e-19  Score=148.97  Aligned_cols=131  Identities=17%  Similarity=0.096  Sum_probs=103.4

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHhC------CCccccccCCCCcHHHHHHHhccHH---HHHhHHhhcccchhh
Q 041107           48 LISDEDRKMTALHLAAGRGDVWMVQEIIDHC------PECCEVVDDRGWNVLHFAMVSFYAR---DLKHLVDKYPAVRNL  118 (374)
Q Consensus        48 ~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~------~~~~~~~d~~g~t~Lh~A~~~~~~~---~~~~Ll~~~~~~~~~  118 (374)
                      +.+|. .|+||||+|++.|+.+  +++...+      +.....+|.+|+||||+|+..++.+   ++++|+    +.|++
T Consensus        11 ~~~d~-~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll----~~gad   83 (154)
T PHA02736         11 SEPDI-EGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM----EWGAD   83 (154)
T ss_pred             HhcCC-CCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHH----HcCCC
Confidence            55677 9999999999999843  3332222      1223557899999999999998764   577887    78899


Q ss_pred             hcccC-CCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107          119 IFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSG  192 (374)
Q Consensus       119 ~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~  192 (374)
                      +|.+| .+|+||||+|++.|+.+.+..| +   ...|++++.+|..|+||+++|...+..   ++.+.|.+.+++
T Consensus        84 in~~~~~~g~T~Lh~A~~~~~~~i~~~L-l---~~~g~d~n~~~~~g~tpL~~A~~~~~~---~i~~~Ll~~ga~  151 (154)
T PHA02736         84 INGKERVFGNTPLHIAVYTQNYELATWL-C---NQPGVNMEILNYAFKTPYYVACERHDA---KMMNILRAKGAQ  151 (154)
T ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHH-H---hCCCCCCccccCCCCCHHHHHHHcCCH---HHHHHHHHcCCC
Confidence            99998 5999999999999987777666 3   346999999999999999999877665   677777776654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.77  E-value=1.1e-18  Score=180.98  Aligned_cols=163  Identities=21%  Similarity=0.045  Sum_probs=118.0

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcC---CHHHHHHHhhcCCcc-----cc----cccCCCCchHHHHHHHcCCHHHH
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAVYLD---RCFISKCLLEADKSA-----AL----ISDEDRKMTALHLAAGRGDVWMV   71 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g---~~~~v~~Ll~~~~~~-----~~----~~d~~~g~tpLh~Aa~~g~~~~v   71 (374)
                      ++|...+.    .+..|.||||.|+..+   ..++++.+.+.+.+.     .+    ..+. .|.||||+||.+|+.+++
T Consensus        70 ~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~-~G~TpLhlAa~~~~~eiV  144 (743)
T TIGR00870        70 ELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFT-PGITALHLAAHRQNYEIV  144 (743)
T ss_pred             HHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccC-CCCcHHHHHHHhCCHHHH
Confidence            34444444    6788999999999732   233444444444321     01    1223 799999999999999999


Q ss_pred             HHHHHhCCCccccc--------------cCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhc
Q 041107           72 QEIIDHCPECCEVV--------------DDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC  137 (374)
Q Consensus        72 ~~Ll~~~~~~~~~~--------------d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g  137 (374)
                      +.|+++|+++. .+              ...|+||||.|+..++.+++++|+    +.|+++|.+|..|+||||+|+..+
T Consensus       145 klLL~~GAdv~-~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl----~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       145 KLLLERGASVP-ARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLS----EDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             HHHHhCCCCCC-cCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHh----cCCcchhhHhhhhhHHHHHHHhhh
Confidence            99999999863 22              136999999999999999999998    788899999999999999999875


Q ss_pred             c-----cc---ccceeeecccccccccc----ccccCCCCChHHHHHhCCCc
Q 041107          138 R-----QS---YDARYDIVPWKIAKAHF----QATNKQNISAEHIYRYGFPD  177 (374)
Q Consensus       138 ~-----~~---~~~~l~L~~~l~~g~~~----~~~n~~g~t~l~~a~~~~~~  177 (374)
                      .     ..   .+..+ ++.....+.+.    ++.|++|.||+++|...++.
T Consensus       220 ~~~~~~~~l~~~~~~~-l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~  270 (743)
T TIGR00870       220 EFKAEYEELSCQMYNF-ALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRI  270 (743)
T ss_pred             hhhHHHHHHHHHHHHH-HHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCc
Confidence            1     11   11122 21113344444    78899999999999876665

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.77  E-value=3.4e-18  Score=167.63  Aligned_cols=105  Identities=16%  Similarity=-0.039  Sum_probs=56.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCC--CcHHHHHHHhccHH---HHHhHHhhcccchhhhcccCCCCCcHHHH
Q 041107           58 ALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG--WNVLHFAMVSFYAR---DLKHLVDKYPAVRNLIFKKDVKGNTPFHV  132 (374)
Q Consensus        58 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g--~t~Lh~A~~~~~~~---~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~  132 (374)
                      ++|.||..|+.+++++|+++|+++ +.+|.+|  .||||.|+.+...+   ++++++    +.|+++|.+|..|+||||+
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLI----s~GADIN~kD~~G~TPLh~  416 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCK----PYIDDINKIDKHGRSILYY  416 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHH----hcCCccccccccCcchHHH
Confidence            344555555555555555555554 4444443  45566555443322   344444    5555666666666666666


Q ss_pred             HHhhccccccceeeeccccccccccccccCCCCChHHHHH
Q 041107          133 LAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYR  172 (374)
Q Consensus       133 A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~  172 (374)
                      |+..++.+.++.|     ++.|++++.+|..|+||+++|.
T Consensus       417 Aa~~~n~eivelL-----Ls~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        417 CIESHSVSLVEWL-----IDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             HHHcCCHHHHHHH-----HHCCCCCCCcCCCCCCHHHHHH
Confidence            6665554444433     5556666666666666666653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=1.5e-17  Score=162.61  Aligned_cols=166  Identities=22%  Similarity=0.108  Sum_probs=130.4

Q ss_pred             ccccccCCCCCcHHHHHHHc---CCHHHHHHHhhcCCcccc---cccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccc-
Q 041107           11 SLTRERDRHGWTPLHYAVYL---DRCFISKCLLEADKSAAL---ISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCE-   83 (374)
Q Consensus        11 ~~~~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~---~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-   83 (374)
                      ...+.+...|.|.||.|...   ++.++++.|++.-+.+.+   ..+...|.||||+|..+.+.++|++|++.|+|+.. 
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            34566677899999999974   456999999997665543   23335899999999999999999999999998521 


Q ss_pred             -------ccc--------------CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccc
Q 041107           84 -------VVD--------------DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYD  142 (374)
Q Consensus        84 -------~~d--------------~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~  142 (374)
                             ..|              .-|+.||..||.-++.+++++|+    +.++++|++|..|||.||..+..-..+.-
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl----~~gAd~~aqDS~GNTVLH~lVi~~~~~My  289 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL----AHGADPNAQDSNGNTVLHMLVIHFVTEMY  289 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH----hcCCCCCccccCCChHHHHHHHHHHHHHH
Confidence                   111              13789999999999999999999    79999999999999999999886322222


Q ss_pred             ceeeeccccccccc--cccccCCCCChHHHHHhCCCc-cHHHHHHH
Q 041107          143 ARYDIVPWKIAKAH--FQATNKQNISAEHIYRYGFPD-LEQEIQEL  185 (374)
Q Consensus       143 ~~l~L~~~l~~g~~--~~~~n~~g~t~l~~a~~~~~~-~~~~i~~~  185 (374)
                      ..  +   +..|++  ..++|++|.|||.+|++.++. ..+.|++.
T Consensus       290 ~~--~---L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  290 DL--A---LELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HH--H---HhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            22  2   677888  889999999999999887665 23444443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.73  E-value=9e-18  Score=149.90  Aligned_cols=139  Identities=22%  Similarity=0.236  Sum_probs=123.8

Q ss_pred             ChHHHHhhCCccccccCCCCCcHHHHHHHc-----CCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHH
Q 041107            1 VPLLLLDKKKSLTRERDRHGWTPLHYAVYL-----DRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII   75 (374)
Q Consensus         1 i~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll   75 (374)
                      ||..||+.+--++|++|+.|+||.++|+..     .+.++|..|.+.| ++ |.+.+..|+|+|++|+..|+.++++.||
T Consensus       283 VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nV-NaKAsQ~gQTALMLAVSHGr~d~vk~LL  360 (452)
T KOG0514|consen  283 VVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DV-NAKASQHGQTALMLAVSHGRVDMVKALL  360 (452)
T ss_pred             HHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Cc-chhhhhhcchhhhhhhhcCcHHHHHHHH
Confidence            578899999999999999999999999864     4588999998865 55 6666668999999999999999999999


Q ss_pred             HhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           76 DHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        76 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                      ..++++ +.+|.+|-|+|++|+++|+.+++++|+.   ....+....|.+|.|+|.+|...|+.++..+|
T Consensus       361 acgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA---~p~cd~sLtD~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  361 ACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLA---VPSCDISLTDVDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             HccCCC-ccccCCccHHHhhhhhhChHHHHHHHhc---cCcccceeecCCCchhhhhHHhcCchHHHHHH
Confidence            999997 9999999999999999999999999983   55678899999999999999999987766544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.72  E-value=5.4e-17  Score=129.30  Aligned_cols=122  Identities=28%  Similarity=0.315  Sum_probs=110.2

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107           15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH   94 (374)
Q Consensus        15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   94 (374)
                      .+|.+|+||||+|+..|+.++++.|++.+.+. +.++. .|.+|+|+|+..++.++++.|++.++.. +..+..|.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~-~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDN-DGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence            45678999999999999999999999999987 78888 9999999999999999999999999875 777899999999


Q ss_pred             HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccc
Q 041107           95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDA  143 (374)
Q Consensus        95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~  143 (374)
                      +|+..++.+++++|+    ..+.+.+..|..|.||||+|...++.+..+
T Consensus        79 ~a~~~~~~~~~~~L~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  123 (126)
T cd00204          79 LAARNGNLDVVKLLL----KHGADVNARDKDGRTPLHLAAKNGHLEVVK  123 (126)
T ss_pred             HHHHcCcHHHHHHHH----HcCCCCcccCCCCCCHHHHHHhcCCHHHHH
Confidence            999999999999998    666788899999999999999986654443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.71  E-value=8.6e-18  Score=162.52  Aligned_cols=164  Identities=23%  Similarity=0.128  Sum_probs=97.6

Q ss_pred             HHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccc
Q 041107            5 LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEV   84 (374)
Q Consensus         5 lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~   84 (374)
                      ||.....+.+..|..|.+|||+|++.|+.++++.++..+..+ +..+. +|.||||.|+..|+.+++.+|++++++. ..
T Consensus        67 llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~-e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i  143 (854)
T KOG0507|consen   67 LLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNI-ENETPLHLAAQHGHLEVVFYLLKKNADP-FI  143 (854)
T ss_pred             HHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCC-Ccccc-cCcCccchhhhhcchHHHHHHHhcCCCc-cc
Confidence            344444556666666666666666666666666666666333 56665 6667777777777777777777766664 56


Q ss_pred             ccCCCCcHHHHHHHhccHHHHHhHHhhcccc----hhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107           85 VDDRGWNVLHFAMVSFYARDLKHLVDKYPAV----RNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT  160 (374)
Q Consensus        85 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~----~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~  160 (374)
                      +|..++|+|-+|++.|..+++++|+.+-...    ......++-.+-+|||+|+++|+....+.|     ++.|.|+|..
T Consensus       144 ~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~l-----l~ag~din~~  218 (854)
T KOG0507|consen  144 RNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQAL-----LEAGFDINYT  218 (854)
T ss_pred             cCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHH-----HhcCCCcccc
Confidence            6666667777777766666666665421000    001223445566677777776665555444     5666666666


Q ss_pred             cCCCCChHHHHHhCCCc
Q 041107          161 NKQNISAEHIYRYGFPD  177 (374)
Q Consensus       161 n~~g~t~l~~a~~~~~~  177 (374)
                      .++| |++|-|...++.
T Consensus       219 t~~g-talheaalcgk~  234 (854)
T KOG0507|consen  219 TEDG-TALHEAALCGKA  234 (854)
T ss_pred             cccc-hhhhhHhhcCcc
Confidence            5555 566655544444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.70  E-value=5.7e-17  Score=147.75  Aligned_cols=118  Identities=9%  Similarity=-0.042  Sum_probs=101.1

Q ss_pred             cccCCCCchH-HHHHHHcCCHHHHHHHHHhCCCccccc----cCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC
Q 041107           49 ISDEDRKMTA-LHLAAGRGDVWMVQEIIDHCPECCEVV----DDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD  123 (374)
Q Consensus        49 ~~d~~~g~tp-Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~----d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d  123 (374)
                      .+|+ .|+|+ ||.|++.|+.+++++|+++|+++ +.+    |..|.||||+|+..++.+++++|+    +.|+++|.++
T Consensus        27 ~~d~-~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL----~~GADVN~~~  100 (300)
T PHA02884         27 KKNK-ICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLI----RYGADVNRYA  100 (300)
T ss_pred             ccCc-CCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCcCccc
Confidence            4566 66665 66677789999999999999997 554    468999999999999999999999    8899999974


Q ss_pred             -CCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCc
Q 041107          124 -VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPD  177 (374)
Q Consensus       124 -~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~  177 (374)
                       ..|+||||+|+..|+.+.++.|     +..|++++.+|..|.||+++|...+..
T Consensus       101 ~~~g~TpLh~Aa~~~~~eivklL-----L~~GAdin~kd~~G~TpL~~A~~~~~~  150 (300)
T PHA02884        101 EEAKITPLYISVLHGCLKCLEIL-----LSYGADINIQTNDMVTPIELALMICNN  150 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCCCCCCCCHHHHHHHhCCh
Confidence             6899999999999987777665     899999999999999999999764433

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=1.1e-16  Score=120.52  Aligned_cols=89  Identities=26%  Similarity=0.243  Sum_probs=79.3

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHH
Q 041107           24 LHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYAR  103 (374)
Q Consensus        24 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  103 (374)
                      ||+|++.|+.++++.|++.+.++ +     .|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+.+++.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~-----~~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-N-----LGNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-T-----SSSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-C-----CCCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHH
Confidence            79999999999999999988877 2     2789999999999999999999999996 888999999999999999999


Q ss_pred             HHHhHHhhcccchhhhcccC
Q 041107          104 DLKHLVDKYPAVRNLIFKKD  123 (374)
Q Consensus       104 ~~~~Ll~~~~~~~~~~n~~d  123 (374)
                      ++++|+    +.|.++|.+|
T Consensus        74 ~~~~Ll----~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLL----EHGADVNIRN   89 (89)
T ss_dssp             HHHHHH----HTTT-TTSS-
T ss_pred             HHHHHH----HcCCCCCCcC
Confidence            999998    7788888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.70  E-value=2.5e-17  Score=159.36  Aligned_cols=171  Identities=19%  Similarity=0.111  Sum_probs=145.3

Q ss_pred             hCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 041107            8 KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDD   87 (374)
Q Consensus         8 ~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   87 (374)
                      .+++..|.+|.+|.|.||.|+..|+.++++.|+++.+-+ ..+|. .|.+|||+|+.+|+.++++.++..+ +..+..+.
T Consensus        37 trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~-kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~  113 (854)
T KOG0507|consen   37 TRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDT-KGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNI  113 (854)
T ss_pred             CCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhc-cCcceEEehhhcCcchHHHHHHhcc-cCCCcccc
Confidence            345678899999999999999999999999999998877 88887 9999999999999999999999998 55689999


Q ss_pred             CCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc--------ccc
Q 041107           88 RGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH--------FQA  159 (374)
Q Consensus        88 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~--------~~~  159 (374)
                      .|.||||.|+++|+.+++.+|+    ..+++.-.+|+.+.|+|-+|++.|....++.| +    ....+        -..
T Consensus       114 e~~tplhlaaqhgh~dvv~~Ll----~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~l-l----~~~~~~~~~~~~~~~~  184 (854)
T KOG0507|consen  114 ENETPLHLAAQHGHLEVVFYLL----KKNADPFIRNNSKETVLDLASRFGRAEVVQML-L----QKKFPVQSSLRVGDIK  184 (854)
T ss_pred             cCcCccchhhhhcchHHHHHHH----hcCCCccccCcccccHHHHHHHhhhhHHHHHH-h----hhccchhhcccCCCCC
Confidence            9999999999999999999999    88999999999999999999999987666654 2    21111        234


Q ss_pred             ccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          160 TNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       160 ~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      ++-.+-+|+|+|.++++.   ++++.+.++|-..
T Consensus       185 ~~~~~~~plHlaakngh~---~~~~~ll~ag~di  215 (854)
T KOG0507|consen  185 RPFPAIYPLHLAAKNGHV---ECMQALLEAGFDI  215 (854)
T ss_pred             CCCCCcCCcchhhhcchH---HHHHHHHhcCCCc
Confidence            455677899999877776   7888887765543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.68  E-value=9.1e-17  Score=157.64  Aligned_cols=163  Identities=9%  Similarity=-0.011  Sum_probs=116.3

Q ss_pred             cccccCCCCCcHHHHH-HHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHH-cCCHHHHHHHHHhCCCccccccCCC
Q 041107           12 LTRERDRHGWTPLHYA-VYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAG-RGDVWMVQEIIDHCPECCEVVDDRG   89 (374)
Q Consensus        12 ~~~~~d~~g~TpLh~A-a~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~-~g~~~~v~~Ll~~~~~~~~~~d~~g   89 (374)
                      ..+..+-+|.+|+|+- +..|+.|+|++|+++|+++ +.++. .|.+|+|+|+. .|+.|++++|+++|++. +..+..|
T Consensus        63 ~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdv-N~~~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~-~~~~~~g  139 (631)
T PHA02792         63 SVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEI-NSIKN-GINIVEKYATTSNPNVDVFKLLLDKGIPT-CSNIQYG  139 (631)
T ss_pred             CCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCc-ccccC-CCCcceeEeecCCCChHHHHHHHHCCCCc-ccccccC
Confidence            3456677888888874 4567899999999999999 88888 88999999965 69999999999999885 5556778


Q ss_pred             CcHHHHHHHh----ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhc-------cccccceeeeccccccccccc
Q 041107           90 WNVLHFAMVS----FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC-------RQSYDARYDIVPWKIAKAHFQ  158 (374)
Q Consensus        90 ~t~Lh~A~~~----~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g-------~~~~~~~l~L~~~l~~g~~~~  158 (374)
                      .|||+.-+.+    ...+..+--     +.+..+|.+|..|+||||+|+...       +.++.+.  |   +.+|++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~--L---i~~g~~~~  209 (631)
T PHA02792        140 YKIIIEQITRAEYYNWDDELDDY-----DYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINY--L---ISHEKEMR  209 (631)
T ss_pred             cchhhhhcccccccchhhhcccc-----ccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHH--H---HhCCCCcC
Confidence            8877766553    111111111     344566778888888888888876       2333333  3   78888888


Q ss_pred             cccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107          159 ATNKQNISAEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       159 ~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      ..|..|.||+|+|.... .+..++.+.|..
T Consensus       210 ~~d~~g~t~l~~~~~~~-~i~~ei~~~L~~  238 (631)
T PHA02792        210 YYTYREHTTLYYYVDKC-DIKREIFDALFD  238 (631)
T ss_pred             ccCCCCChHHHHHHHcc-cchHHHHHHHHh
Confidence            88888888888876554 233456665554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.66  E-value=1.5e-16  Score=149.08  Aligned_cols=159  Identities=19%  Similarity=0.157  Sum_probs=134.8

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHH
Q 041107           24 LHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYAR  103 (374)
Q Consensus        24 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  103 (374)
                      +.-|+..|..+-|+.|+..++++ +.++. +|.|+||-+|...+.+||++|+++++++ +..|..|+||||.|+..|+..
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~-~~~n~-DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASP-NLCNV-DGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCc-cccCC-ccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHH
Confidence            45688899999999999999998 88999 9999999999999999999999999997 899999999999999999999


Q ss_pred             HHHhHHhhc-------------------------------------------------------ccchhhhcccCCCCCc
Q 041107          104 DLKHLVDKY-------------------------------------------------------PAVRNLIFKKDVKGNT  128 (374)
Q Consensus       104 ~~~~Ll~~~-------------------------------------------------------~~~~~~~n~~d~~G~T  128 (374)
                      ++++++...                                                       ...|...+..+..|-|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            999997521                                                       1233344456667999


Q ss_pred             HHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          129 PFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       129 ~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      .||.|+..|+......|     ++.|.+++++|.+|+||+|.|+..+..   ...++|.++++..
T Consensus       201 ~lHvAaa~Gy~e~~~lL-----l~ag~~~~~~D~dgWtPlHAAA~Wg~~---~~~elL~~~ga~~  257 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALL-----LQAGYSVNIKDYDGWTPLHAAAHWGQE---DACELLVEHGADM  257 (527)
T ss_pred             HHHHHHhhhHHHHHHHH-----HHhccCcccccccCCCcccHHHHhhhH---hHHHHHHHhhccc
Confidence            99999999986666544     899999999999999999999887776   5555666655543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.65  E-value=2.3e-16  Score=118.80  Aligned_cols=89  Identities=22%  Similarity=0.234  Sum_probs=78.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcc
Q 041107           59 LHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCR  138 (374)
Q Consensus        59 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~  138 (374)
                      ||+|++.|+.++++.|++.++++ ..    |+||||+|+.+|+.+++++|+    +.|.+++.+|.+|+||||+|+..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLL----ENGADINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHH----HTTTCTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHH----HhcccccccCCCCCCHHHHHHHcCC
Confidence            79999999999999999988776 22    999999999999999999999    7889999999999999999999999


Q ss_pred             ccccceeeecccccccccccccc
Q 041107          139 QSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus       139 ~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                      .+.++.|     ++.|++++.+|
T Consensus        72 ~~~~~~L-----l~~g~~~~~~n   89 (89)
T PF12796_consen   72 LEIVKLL-----LEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHH-----HHTTT-TTSS-
T ss_pred             HHHHHHH-----HHcCCCCCCcC
Confidence            8777766     78899998876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.62  E-value=1.9e-15  Score=148.21  Aligned_cols=139  Identities=18%  Similarity=0.181  Sum_probs=120.0

Q ss_pred             ChHHHHhhCCccccccC----CCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccC----------------------CC
Q 041107            1 VPLLLLDKKKSLTRERD----RHGWTPLHYAVYLDRCFISKCLLEADKSAALISDE----------------------DR   54 (374)
Q Consensus         1 i~~~lL~~~~~~~~~~d----~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~----------------------~~   54 (374)
                      +++.||+..|.++|..-    -.|.||||+|+...+.++|++|++.|+|+ +.+..                      ..
T Consensus       161 la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~Yf  239 (782)
T KOG3676|consen  161 LARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFYF  239 (782)
T ss_pred             HHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceeee
Confidence            36788888898888542    35999999999999999999999999998 44211                      25


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhh--hcccCCCCCcHHHH
Q 041107           55 KMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNL--IFKKDVKGNTPFHV  132 (374)
Q Consensus        55 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~--~n~~d~~G~T~LH~  132 (374)
                      |..||-+||.-++.|++++|+++++|+ +.+|.+|+|+||..+.+-..++.++++    +.|++  ...+|.+|-|||-+
T Consensus       240 GEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L----~~ga~~l~~v~N~qgLTPLtL  314 (782)
T KOG3676|consen  240 GEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLAL----ELGANALEHVRNNQGLTPLTL  314 (782)
T ss_pred             ccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHH----hcCCCccccccccCCCChHHH
Confidence            789999999999999999999999996 999999999999999999999999998    55555  88899999999999


Q ss_pred             HHhhcccccccee
Q 041107          133 LAAVCRQSYDARY  145 (374)
Q Consensus       133 A~~~g~~~~~~~l  145 (374)
                      ||+.|+..+...+
T Consensus       315 AaklGk~emf~~i  327 (782)
T KOG3676|consen  315 AAKLGKKEMFQHI  327 (782)
T ss_pred             HHHhhhHHHHHHH
Confidence            9999986655543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=4.6e-15  Score=130.65  Aligned_cols=130  Identities=23%  Similarity=0.196  Sum_probs=117.0

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCC-----HHHHHHHHHhCC--Ccc
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGD-----VWMVQEIIDHCP--ECC   82 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~-----~~~v~~Ll~~~~--~~~   82 (374)
                      .......+..+.+++|.++..+..+++++++..+.++ +.++. +|.||||+|+..|+     .++++.|++.++  +..
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~  140 (235)
T COG0666          63 DRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN  140 (235)
T ss_pred             ccccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCc
Confidence            3444556677999999999999999999999999999 99999 99999999999999     999999999999  677


Q ss_pred             ccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           83 EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        83 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                      ...|..|+||||+|+..|+.++++.++    +.+++++.+|..|.|+||.|+..++......+
T Consensus       141 ~~~~~~g~tpl~~A~~~~~~~~~~~ll----~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  199 (235)
T COG0666         141 NLRDEDGNTPLHWAALNGDADIVELLL----EAGADPNSRNSYGVTALDPAAKNGRIELVKLL  199 (235)
T ss_pred             cccCCCCCchhHHHHHcCchHHHHHHH----hcCCCCcccccCCCcchhhhcccchHHHHHHH
Confidence            888999999999999999999999998    77899999999999999999999876555544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.59  E-value=8.4e-15  Score=116.52  Aligned_cols=117  Identities=24%  Similarity=0.231  Sum_probs=103.7

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcH
Q 041107           50 SDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTP  129 (374)
Q Consensus        50 ~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~  129 (374)
                      +|. +|.||||+|+..|+.++++.|++.+++. ...|..|.||||.|+..+..++++.++    ..+..++..|..|.||
T Consensus         3 ~~~-~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll----~~~~~~~~~~~~~~~~   76 (126)
T cd00204           3 RDE-DGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLL----EKGADVNARDKDGNTP   76 (126)
T ss_pred             cCc-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCH
Confidence            455 8999999999999999999999999986 788899999999999999999999998    6666888899999999


Q ss_pred             HHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCc
Q 041107          130 FHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPD  177 (374)
Q Consensus       130 LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~  177 (374)
                      +|+|++.++....+.|     +..+.+.+..|..|.||++.+......
T Consensus        77 l~~a~~~~~~~~~~~L-----~~~~~~~~~~~~~~~~~l~~~~~~~~~  119 (126)
T cd00204          77 LHLAARNGNLDVVKLL-----LKHGADVNARDKDGRTPLHLAAKNGHL  119 (126)
T ss_pred             HHHHHHcCcHHHHHHH-----HHcCCCCcccCCCCCCHHHHHHhcCCH
Confidence            9999999886666655     778889999999999999999766443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=2.8e-14  Score=97.19  Aligned_cols=56  Identities=29%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             HHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHH
Q 041107            5 LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA   62 (374)
Q Consensus         5 lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~A   62 (374)
                      ||+.++.+++.+|..|.||||+||..|+.+++++|++.+.++ +.+|+ +|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~-~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDK-DGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---T-TS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcC-CCCCHHHhC
Confidence            456666788888888888888888888888888888888888 88888 888888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1.2e-13  Score=93.45  Aligned_cols=54  Identities=37%  Similarity=0.445  Sum_probs=39.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHH
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII   75 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll   75 (374)
                      |+||||+|++.|+.+++++|++++.++ +.+|. +|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~-~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDE-DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-T-TS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888887 77777 8888888888888888888775

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=7.4e-13  Score=116.51  Aligned_cols=128  Identities=22%  Similarity=0.134  Sum_probs=111.4

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhcc-----HHHHHhHHhhcccchh---hh
Q 041107           48 LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFY-----ARDLKHLVDKYPAVRN---LI  119 (374)
Q Consensus        48 ~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~~~~Ll~~~~~~~~---~~  119 (374)
                      ...+. .+.+++|.++..+..+++++++..+.++ ..+|..|.||||+|+.+++     .++++.|+    +.|+   ..
T Consensus        67 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll----~~g~~~~~~  140 (235)
T COG0666          67 AARDL-DGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLL----EAGADLDVN  140 (235)
T ss_pred             ccCCc-cccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHH----HcCCCCCCc
Confidence            44555 7899999999999999999999999998 9999999999999999999     99999998    6777   77


Q ss_pred             cccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          120 FKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       120 n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      +.+|..|+||||+|+..|+...+..+     ++.|++++..|..|.|+++.+...+..   .+...+.+.
T Consensus       141 ~~~~~~g~tpl~~A~~~~~~~~~~~l-----l~~~~~~~~~~~~g~t~l~~a~~~~~~---~~~~~l~~~  202 (235)
T COG0666         141 NLRDEDGNTPLHWAALNGDADIVELL-----LEAGADPNSRNSYGVTALDPAAKNGRI---ELVKLLLDK  202 (235)
T ss_pred             cccCCCCCchhHHHHHcCchHHHHHH-----HhcCCCCcccccCCCcchhhhcccchH---HHHHHHHhc
Confidence            77899999999999999987666555     888999999999999999999776665   555555553

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.43  E-value=4.3e-13  Score=136.58  Aligned_cols=110  Identities=16%  Similarity=0.143  Sum_probs=98.4

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccH
Q 041107           23 PLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYA  102 (374)
Q Consensus        23 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  102 (374)
                      +||.|+..|+.+.++.|++.|+++ +.+|. .|+||||+|+.+|+.+++++|++.|+++ +.+|..|+||||+|+.+++.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~-~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDY-DGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            488999999999999999999999 89999 9999999999999999999999999996 88999999999999999999


Q ss_pred             HHHHhHHhhc---ccchhhhcccCCCCCcHHHHHHh
Q 041107          103 RDLKHLVDKY---PAVRNLIFKKDVKGNTPFHVLAA  135 (374)
Q Consensus       103 ~~~~~Ll~~~---~~~~~~~n~~d~~G~T~LH~A~~  135 (374)
                      +++++|++..   .+.+++.+..+.+|++|+-.+..
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhhh
Confidence            9999998431   13377888888888888776653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=3e-13  Score=92.09  Aligned_cols=47  Identities=26%  Similarity=0.226  Sum_probs=17.1

Q ss_pred             ccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107           83 EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL  133 (374)
Q Consensus        83 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A  133 (374)
                      +..|..|+||||+||.+|+.+++++|+    +.+.+++.+|.+|+||||+|
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll----~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLL----QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHH----HCT--TT---TTS--HHHH-
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHH----HCcCCCCCCcCCCCCHHHhC
Confidence            444555555555555555555555554    44455555555555555544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.38  E-value=1.1e-12  Score=88.76  Aligned_cols=54  Identities=28%  Similarity=0.393  Sum_probs=44.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHH
Q 041107           55 KMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLV  109 (374)
Q Consensus        55 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll  109 (374)
                      |+||||+|++.|+.+++++|++.+.++ +.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999996 777999999999999999999999884

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=8.3e-13  Score=134.50  Aligned_cols=105  Identities=14%  Similarity=0.041  Sum_probs=93.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhh
Q 041107           57 TALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAV  136 (374)
Q Consensus        57 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~  136 (374)
                      ++||.|+..|+.+.++.|++.++++ +.+|.+|+||||+|+.+|+.+++++|+    +.|+++|.+|.+|+||||+|+..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL----~~Gadvn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLL----EFGADPTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHC
Confidence            3588999999999999999999996 888999999999999999999999999    78999999999999999999999


Q ss_pred             ccccccceeeecccccc-------ccccccccCCCCChHHHH
Q 041107          137 CRQSYDARYDIVPWKIA-------KAHFQATNKQNISAEHIY  171 (374)
Q Consensus       137 g~~~~~~~l~L~~~l~~-------g~~~~~~n~~g~t~l~~a  171 (374)
                      |+...+..|     +..       |++.+..+..|.+|+...
T Consensus       159 g~~~iv~~L-----l~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        159 GFREVVQLL-----SRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             CcHHHHHHH-----HhCCCcccccCCCCCccccCCCCccchh
Confidence            987777655     455       888888898888776654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.36  E-value=3.3e-12  Score=92.54  Aligned_cols=101  Identities=16%  Similarity=0.009  Sum_probs=80.0

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccH
Q 041107           23 PLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYA  102 (374)
Q Consensus        23 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  102 (374)
                      -..++.+.|..+-|+.....|.++ +..  ..|++|||+||..|+.+++++|+..|+++ ..+|+.|-|||.-|+..|+.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nV-n~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNV-NEI--YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccH-HHH--hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhH
Confidence            356788888888888888877665 322  26788888888888888888888888886 78888888888888888888


Q ss_pred             HHHHhHHhhcccchhhhcccCCCCCcHHH
Q 041107          103 RDLKHLVDKYPAVRNLIFKKDVKGNTPFH  131 (374)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH  131 (374)
                      +++++|+    +.|++-..+..+|.+.+-
T Consensus        81 ~cVklLL----~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   81 DCVKLLL----QNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHH----HcCcccceeCCCchhHHh
Confidence            8888888    777777677777766554

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.33  E-value=9.3e-13  Score=132.05  Aligned_cols=157  Identities=20%  Similarity=0.208  Sum_probs=117.3

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCE   83 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~   83 (374)
                      +||..++..+..+|+.|.+||.+|+-.||..+|+.|+++.+++.-..|+ .+.|+|-+||..|+.+++++||..+++- +
T Consensus       774 ellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdr-tkdt~lSlacsggr~~vvelLl~~gank-e  851 (2131)
T KOG4369|consen  774 ELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDR-TKDTMLSLACSGGRTRVVELLLNAGANK-E  851 (2131)
T ss_pred             HHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhccc-ccCceEEEecCCCcchHHHHHHHhhccc-c
Confidence            3455566778888999999999999999999999999888888566677 8888888888888888888888888874 7


Q ss_pred             cccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC--CCCCcHHHHHHhhccccccceeeeccccccccccccc-
Q 041107           84 VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD--VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT-  160 (374)
Q Consensus        84 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d--~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~-  160 (374)
                      .++....|||.+|...|+.++++.|+    ..|..+|.+.  +.|-.||.+|..+|++.....+     ++.|-|+|.. 
T Consensus       852 hrnvsDytPlsla~Sggy~~iI~~ll----S~GseInSrtgSklgisPLmlatmngh~~at~~l-----l~~gsdiNaqI  922 (2131)
T KOG4369|consen  852 HRNVSDYTPLSLARSGGYTKIIHALL----SSGSEINSRTGSKLGISPLMLATMNGHQAATLSL-----LQPGSDINAQI  922 (2131)
T ss_pred             ccchhhcCchhhhcCcchHHHHHHHh----hcccccccccccccCcchhhhhhhccccHHHHHH-----hcccchhcccc
Confidence            77777888888888888888888887    6666666654  5677788888877776555443     5666666542 


Q ss_pred             cCCCCChHHHH
Q 041107          161 NKQNISAEHIY  171 (374)
Q Consensus       161 n~~g~t~l~~a  171 (374)
                      ..+-+|++.+|
T Consensus       923 eTNrnTaltla  933 (2131)
T KOG4369|consen  923 ETNRNTALTLA  933 (2131)
T ss_pred             ccccccceeec
Confidence            22334555444

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.33  E-value=2.5e-12  Score=93.17  Aligned_cols=103  Identities=16%  Similarity=0.081  Sum_probs=91.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhc
Q 041107           58 ALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC  137 (374)
Q Consensus        58 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g  137 (374)
                      -+.|+.++|..+-|+..+..+-++...  ..|++|||+|+..|+.+++++|+    ..|++++.+|+.|-|||--|+..|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli----~iGA~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLI----SIGANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHH----HhccccCCccccCCcHHHHHHHHh
Confidence            467899999999999999988665333  38999999999999999999999    889999999999999999999999


Q ss_pred             cccccceeeeccccccccccccccCCCCChHHHH
Q 041107          138 RQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY  171 (374)
Q Consensus       138 ~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a  171 (374)
                      |...++.|     ++.|+|......+|.+.++.+
T Consensus        79 H~~cVklL-----L~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   79 HRDCVKLL-----LQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             hHHHHHHH-----HHcCcccceeCCCchhHHhhc
Confidence            97766655     899999999999998888766

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.31  E-value=7.2e-13  Score=132.82  Aligned_cols=178  Identities=18%  Similarity=0.093  Sum_probs=151.0

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      |..||+.+-+.-...|+++.|+|.+||..|+.++|++||.+|++- ..++- ..+|||.+|...|.++++..|+.+|.++
T Consensus       806 V~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gank-ehrnv-sDytPlsla~Sggy~~iI~~llS~GseI  883 (2131)
T KOG4369|consen  806 VQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNV-SDYTPLSLARSGGYTKIIHALLSSGSEI  883 (2131)
T ss_pred             HHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccc-cccch-hhcCchhhhcCcchHHHHHHHhhccccc
Confidence            456666666666677899999999999999999999999999988 77777 8899999999999999999999999887


Q ss_pred             cccc-cCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeecccccccccccc
Q 041107           82 CEVV-DDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQA  159 (374)
Q Consensus        82 ~~~~-d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~  159 (374)
                      .... .+.|-.||.+|..+|+....+.|+    +.|.++|.+- .+-||+|-+|+..|+.+.+..|     +...+++..
T Consensus       884 nSrtgSklgisPLmlatmngh~~at~~ll----~~gsdiNaqIeTNrnTaltla~fqgr~evv~lL-----La~~anveh  954 (2131)
T KOG4369|consen  884 NSRTGSKLGISPLMLATMNGHQAATLSLL----QPGSDINAQIETNRNTALTLALFQGRPEVVFLL-----LAAQANVEH  954 (2131)
T ss_pred             ccccccccCcchhhhhhhccccHHHHHHh----cccchhccccccccccceeeccccCcchHHHHH-----HHHhhhhhh
Confidence            4333 468999999999999999999998    7788888754 5679999999999987666544     889999999


Q ss_pred             ccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          160 TNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       160 ~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      +-+.|.|||.-++.++.-   ++-+.|...|++.
T Consensus       955 Raktgltplme~AsgGyv---dvg~~li~~gad~  985 (2131)
T KOG4369|consen  955 RAKTGLTPLMEMASGGYV---DVGNLLIAAGADT  985 (2131)
T ss_pred             hcccCCcccchhhcCCcc---ccchhhhhccccc
Confidence            999999999988777775   5666677766654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.30  E-value=7.1e-12  Score=109.16  Aligned_cols=97  Identities=19%  Similarity=0.142  Sum_probs=84.6

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG   89 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g   89 (374)
                      -..+|.+|.+|.|||..|+..|+.++|+.|++.|+|+...++. .+.||||+||-.|+.++.+.|++.|+.. ...|.-|
T Consensus        35 vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg-~~YTpLmFAALSGn~dvcrllldaGa~~-~~vNsvg  112 (396)
T KOG1710|consen   35 VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHG-TLYTPLMFAALSGNQDVCRLLLDAGARM-YLVNSVG  112 (396)
T ss_pred             hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccc-ccccHHHHHHHcCCchHHHHHHhccCcc-ccccchh
Confidence            3458888999999999999999999999999999999666666 8899999999999999999999999885 7888899


Q ss_pred             CcHHHHHHHhccHHHHHhH
Q 041107           90 WNVLHFAMVSFYARDLKHL  108 (374)
Q Consensus        90 ~t~Lh~A~~~~~~~~~~~L  108 (374)
                      +|+-..|+.-|+.+++..+
T Consensus       113 rTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen  113 RTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             hhHHHHHHHhcchHHHHHH
Confidence            9999999999988888776

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=4.5e-12  Score=118.51  Aligned_cols=80  Identities=23%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             HHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHH
Q 041107           27 AVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLK  106 (374)
Q Consensus        27 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  106 (374)
                      |+..|..++|+..+..-.|. ...+. +|-|+||-|+..||.+||++|++.|+++ +..|.+||||||+|+..+...+++
T Consensus       557 aaLeGEldlVq~~i~ev~Dp-SqpNd-EGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDP-SQPND-EGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCC-CCCCc-cchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHHHH
Confidence            55666666666666544444 44555 6666666666666666666666666665 666666666666666666666666


Q ss_pred             hHH
Q 041107          107 HLV  109 (374)
Q Consensus       107 ~Ll  109 (374)
                      .|+
T Consensus       634 qLV  636 (752)
T KOG0515|consen  634 QLV  636 (752)
T ss_pred             HHH
Confidence            666

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.24  E-value=3.2e-11  Score=105.13  Aligned_cols=118  Identities=18%  Similarity=0.149  Sum_probs=107.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV   98 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~   98 (374)
                      .-..||.-+.-.|+.+-...||+.-.++ +.+|. .|++||..|+..|+.+++++|++.|+|+...++..+.||||.|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~-sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQV-NQRDP-SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhh-hccCC-CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            3468999999999999999999875556 89999 999999999999999999999999999988889999999999999


Q ss_pred             hccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccc
Q 041107           99 SFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYD  142 (374)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~  142 (374)
                      .|+.+++++|+    +.|+.+...|.-|+|+-.+|+..|+.+-+
T Consensus        89 SGn~dvcrlll----daGa~~~~vNsvgrTAaqmAAFVG~H~CV  128 (396)
T KOG1710|consen   89 SGNQDVCRLLL----DAGARMYLVNSVGRTAAQMAAFVGHHECV  128 (396)
T ss_pred             cCCchHHHHHH----hccCccccccchhhhHHHHHHHhcchHHH
Confidence            99999999999    88888889999999999999999975433

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=2.7e-11  Score=113.43  Aligned_cols=94  Identities=20%  Similarity=0.154  Sum_probs=44.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH
Q 041107           13 TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNV   92 (374)
Q Consensus        13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~   92 (374)
                      ....|.+|.|+||-|+-.||.+||++|++.|+++ +..|. +||||||+||..+++.+++.|++.|+.+.-..=.++.|+
T Consensus       576 pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DS-dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa  653 (752)
T KOG0515|consen  576 PSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADS-DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETA  653 (752)
T ss_pred             CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccC-CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccch
Confidence            3344444555555555555555555555555555 55554 555555555555555555555555544433333444444


Q ss_pred             HHHHHHh--ccHHHHHhH
Q 041107           93 LHFAMVS--FYARDLKHL  108 (374)
Q Consensus        93 Lh~A~~~--~~~~~~~~L  108 (374)
                      .--+-..  |+..|.++|
T Consensus       654 ~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  654 AEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             hhhcchhhhhHHHHHHHH
Confidence            3322211  444444444

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.07  E-value=7.4e-11  Score=115.72  Aligned_cols=91  Identities=25%  Similarity=0.320  Sum_probs=84.5

Q ss_pred             hhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 041107            7 DKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD   86 (374)
Q Consensus         7 ~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d   86 (374)
                      .....++|.+|..|+|+||+|+..|..+++++|+++|.++ +.+|++.|+||||-|...|+.|++-.|+++|.++ ..+|
T Consensus        39 k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~D  116 (1267)
T KOG0783|consen   39 KSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKD  116 (1267)
T ss_pred             HhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCce-EEec
Confidence            4556779999999999999999999999999999999999 9999988999999999999999999999999886 9999


Q ss_pred             CCCCcHHHHHHHh
Q 041107           87 DRGWNVLHFAMVS   99 (374)
Q Consensus        87 ~~g~t~Lh~A~~~   99 (374)
                      ++|.+||..-++-
T Consensus       117 keglsplq~~~r~  129 (1267)
T KOG0783|consen  117 KEGLSPLQFLSRV  129 (1267)
T ss_pred             ccCCCHHHHHhhc
Confidence            9999999988874

>PF13606 Ank_3: Ankyrin repeat

Probab=98.73  E-value=1.4e-08  Score=59.12  Aligned_cols=28  Identities=39%  Similarity=0.407  Sum_probs=17.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCcc
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLEADKSA   46 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~   46 (374)
                      +|+||||+||+.|+.|++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            3666666666666666666666666655

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.71  E-value=1.5e-08  Score=94.23  Aligned_cols=91  Identities=21%  Similarity=0.110  Sum_probs=81.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107           17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA   96 (374)
Q Consensus        17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   96 (374)
                      +.++..++.+|++.|++..++.+.-.|.|+ ..+|. +.+|+||.||..|+++++++|++.+......+|..|+|||--|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~Dy-D~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDY-DDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc-ccccc-ccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            445678899999999999999988889998 88998 9999999999999999999999988777788999999999999


Q ss_pred             HHhccHHHHHhHH
Q 041107           97 MVSFYARDLKHLV  109 (374)
Q Consensus        97 ~~~~~~~~~~~Ll  109 (374)
                      ...++.+++++|-
T Consensus       581 ~~F~h~~v~k~L~  593 (622)
T KOG0506|consen  581 KHFKHKEVVKLLE  593 (622)
T ss_pred             HhcCcHHHHHHHH
Confidence            9999999999885

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.68  E-value=6.8e-08  Score=90.29  Aligned_cols=94  Identities=21%  Similarity=0.167  Sum_probs=84.3

Q ss_pred             ccCCCCCcH------HHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 041107           15 ERDRHGWTP------LHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR   88 (374)
Q Consensus        15 ~~d~~g~Tp------Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   88 (374)
                      .+|.+|.|.      ||..++.|+.+..-.||..|++. +..+.+.|.||||.|++.|+.--+++|.-+|+|+ ...|.+
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~-N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~  199 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQA-NFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSS  199 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHccccc-CCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCC
Confidence            456677776      89999999999999999999999 6666658999999999999999999999999997 899999


Q ss_pred             CCcHHHHHHHhccHHHHHhHHh
Q 041107           89 GWNVLHFAMVSFYARDLKHLVD  110 (374)
Q Consensus        89 g~t~Lh~A~~~~~~~~~~~Ll~  110 (374)
                      |.||+-+|-..|+-++.+-|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999888777765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.65  E-value=3.5e-08  Score=59.08  Aligned_cols=32  Identities=38%  Similarity=0.378  Sum_probs=18.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCccccccc
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISD   51 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d   51 (374)
                      +|+||||+|++.|+.+++++|+++|+++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            3556666666666666666666666655 4433

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.64  E-value=6.9e-08  Score=91.58  Aligned_cols=113  Identities=25%  Similarity=0.220  Sum_probs=90.9

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC-ccccccCCCCcHHHHHHHhccH
Q 041107           24 LHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE-CCEVVDDRGWNVLHFAMVSFYA  102 (374)
Q Consensus        24 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh~A~~~~~~  102 (374)
                      +.-|+..++.--.+.+-.+|.++ ..++. +..+-||+|+..|+-|+|+++++++|. +....|..|+|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~-~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGP-DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCc-chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            34555666655555555677777 77888 889999999999999999999999975 4566788999999999999999


Q ss_pred             HHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccc
Q 041107          103 RDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYD  142 (374)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~  142 (374)
                      .++++|+    +.|+.+...|..|.||=.-|-+.|..+..
T Consensus       948 ~vc~~lv----dagasl~ktd~kg~tp~eraqqa~d~dla  983 (1004)
T KOG0782|consen  948 AVCQLLV----DAGASLRKTDSKGKTPQERAQQAGDPDLA  983 (1004)
T ss_pred             HHHHHHH----hcchhheecccCCCChHHHHHhcCCchHH
Confidence            9999998    78888889999999998888777664443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.63  E-value=5.1e-08  Score=92.46  Aligned_cols=98  Identities=22%  Similarity=0.116  Sum_probs=88.4

Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCc-ccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 041107            9 KKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKS-AALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDD   87 (374)
Q Consensus         9 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   87 (374)
                      .+..+-.++.+.+|-||+|++.|+.|+|+++|++++. +.+..|. .|.|+||-|+..++..++.+|++.|+++ ...|.
T Consensus       888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de-~get~lhkaa~~~~r~vc~~lvdagasl-~ktd~  965 (1004)
T KOG0782|consen  888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADE-TGETALHKAACQRNRAVCQLLVDAGASL-RKTDS  965 (1004)
T ss_pred             cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhh-hhhHHHHHHHHhcchHHHHHHHhcchhh-eeccc
Confidence            3455677889999999999999999999999998865 3456677 9999999999999999999999999996 88999


Q ss_pred             CCCcHHHHHHHhccHHHHHhH
Q 041107           88 RGWNVLHFAMVSFYARDLKHL  108 (374)
Q Consensus        88 ~g~t~Lh~A~~~~~~~~~~~L  108 (374)
                      +|.||-.-|-+.+..++..+|
T Consensus       966 kg~tp~eraqqa~d~dlaayl  986 (1004)
T KOG0782|consen  966 KGKTPQERAQQAGDPDLAAYL  986 (1004)
T ss_pred             CCCChHHHHHhcCCchHHHHH
Confidence            999999999999999999998

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.60  E-value=2.8e-08  Score=98.04  Aligned_cols=93  Identities=24%  Similarity=0.248  Sum_probs=83.2

Q ss_pred             HHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHHHhccHHHHHhHHhhcccch
Q 041107           38 CLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD-DRGWNVLHFAMVSFYARDLKHLVDKYPAVR  116 (374)
Q Consensus        38 ~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~  116 (374)
                      ++-+.+.+.++++|. .|+|+||+|+..|..++++.|+++|.++ ..+| ..|+||||-|..+|+.+++-.|+    ..|
T Consensus        36 F~~k~c~n~anikD~-~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL----~~g  109 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDR-YGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLL----SKG  109 (1267)
T ss_pred             HHHHhhhhhhhHHHh-hccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHH----hcC
Confidence            444466677799999 9999999999999999999999999997 5555 58999999999999999999998    788


Q ss_pred             hhhcccCCCCCcHHHHHHhh
Q 041107          117 NLIFKKDVKGNTPFHVLAAV  136 (374)
Q Consensus       117 ~~~n~~d~~G~T~LH~A~~~  136 (374)
                      ..+..+|++|..||..-++.
T Consensus       110 ~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  110 RSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             CceEEecccCCCHHHHHhhc
Confidence            99999999999999998883

>PF13606 Ank_3: Ankyrin repeat

Probab=98.57  E-value=6.8e-08  Score=56.26  Aligned_cols=28  Identities=32%  Similarity=0.559  Sum_probs=24.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      +|+||||+||+.|+.|++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4889999999999999999999998875

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.52  E-value=3.6e-08  Score=91.73  Aligned_cols=86  Identities=20%  Similarity=0.129  Sum_probs=78.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL  133 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A  133 (374)
                      ++..++++|++.|.+..++-+.-.+.|. +..|.+.+|+||+|+..|+.+++++|++   ..+.+++.+|.+|+|||.-|
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~---~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLN---ACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHH---HHcCCCChhhccCCCcchHh
Confidence            6678999999999999999999999996 8999999999999999999999999986   55678999999999999999


Q ss_pred             Hhhccccccc
Q 041107          134 AAVCRQSYDA  143 (374)
Q Consensus       134 ~~~g~~~~~~  143 (374)
                      ...+|.+.++
T Consensus       581 ~~F~h~~v~k  590 (622)
T KOG0506|consen  581 KHFKHKEVVK  590 (622)
T ss_pred             HhcCcHHHHH
Confidence            9988865554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.51  E-value=1.6e-07  Score=56.13  Aligned_cols=32  Identities=31%  Similarity=0.397  Sum_probs=25.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD   86 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d   86 (374)
                      +|+||||+|+..|+.+++++|+++|+++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            4788888888888888888888888875 4444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.51  E-value=2e-07  Score=88.27  Aligned_cols=68  Identities=29%  Similarity=0.424  Sum_probs=40.0

Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 041107            9 KKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC   78 (374)
Q Consensus         9 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~   78 (374)
                      ....++.+|..|+||||+|+..|+.+.++.|+..++++ ..+|+ +|++|||-|+..|+.+++..++.+.
T Consensus        44 ~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~-~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   44 VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNN-EGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-ccccc-ccccHHHHHHHcCCHHHHHHHHHHh
Confidence            33445555656666666666666666666666666655 55555 6666666666666665555555543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.42  E-value=3.6e-07  Score=85.54  Aligned_cols=82  Identities=15%  Similarity=0.080  Sum_probs=70.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhc
Q 041107           58 ALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC  137 (374)
Q Consensus        58 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g  137 (374)
                      -||..++.|+.+..--|+..|++.....-..|.||||+|++.|+..-+++|+    -.|++++.+|.+|.||+.+|-..|
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~----vYGAD~~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLA----VYGADPGAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHh----hccCCCCCCCCCCCcHHHHHHhcC
Confidence            4888899999999989999999976666678999999999999999999987    889999999999999999998888


Q ss_pred             cccccc
Q 041107          138 RQSYDA  143 (374)
Q Consensus       138 ~~~~~~  143 (374)
                      |..+..
T Consensus       212 H~~lae  217 (669)
T KOG0818|consen  212 HHELAE  217 (669)
T ss_pred             chHHHH
Confidence            754443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.39  E-value=7.2e-07  Score=84.55  Aligned_cols=87  Identities=22%  Similarity=0.243  Sum_probs=72.1

Q ss_pred             cHHHHHHHcCCHHHHHHHhh-cCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhc
Q 041107           22 TPLHYAVYLDRCFISKCLLE-ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSF  100 (374)
Q Consensus        22 TpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  100 (374)
                      -|||+++.....+-...++. .-....+.+|. .|.||||+|+.-|+.+.++.|+..++++ ..+|.+|++|||-|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~-~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDP-PGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccC-CCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcC
Confidence            35999999888665555443 32333377888 9999999999999999999999999996 899999999999999999


Q ss_pred             cHHHHHhHHh
Q 041107          101 YARDLKHLVD  110 (374)
Q Consensus       101 ~~~~~~~Ll~  110 (374)
                      ..+++..++.
T Consensus       100 ~~q~i~~vlr  109 (560)
T KOG0522|consen  100 NEQIITEVLR  109 (560)
T ss_pred             CHHHHHHHHH
Confidence            9988766654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.24  E-value=2.8e-06  Score=70.30  Aligned_cols=71  Identities=24%  Similarity=0.285  Sum_probs=63.6

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ...+|.+|..|||||++|+..|+.+.|.+|+.+|..-+..+|. .|.+++.+|-+.|..+++..|-+...+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~-ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDE-SSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccccccc-ccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            3568999999999999999999999999999999444489999 9999999999999999999999886554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.24  E-value=2.6e-06  Score=81.39  Aligned_cols=85  Identities=26%  Similarity=0.203  Sum_probs=69.1

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCcc--cccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhcc
Q 041107           24 LHYAVYLDRCFISKCLLEADKSA--ALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFY  101 (374)
Q Consensus        24 Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  101 (374)
                      |.-|+...++..+-.||.+|...  .....+.+|+|+||+||+.|++.+.++|+-+|.|+ ..+|.+|+|+|.+|-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            45566677777888888876543  12222237899999999999999999999999997 8889999999999999999


Q ss_pred             HHHHHhHH
Q 041107          102 ARDLKHLV  109 (374)
Q Consensus       102 ~~~~~~Ll  109 (374)
                      .+++++|+
T Consensus       707 qec~d~ll  714 (749)
T KOG0705|consen  707 QECIDVLL  714 (749)
T ss_pred             HHHHHHHH
Confidence            99999998

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.13  E-value=2.7e-06  Score=87.21  Aligned_cols=79  Identities=20%  Similarity=0.090  Sum_probs=70.0

Q ss_pred             CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCC
Q 041107           87 DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNIS  166 (374)
Q Consensus        87 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t  166 (374)
                      ..|.|+||.|+..+....+++|+    +.|+++|..|..|+||||.+...|+......+     +++|++.++.|.+|++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll----~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~l-----l~~~a~~~a~~~~~~~  724 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLL----QNGADVNALDSKGRTPLHHATASGHTSIACLL-----LKRGADPNAFDPDGKL  724 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHH----hcCCcchhhhccCCCcchhhhhhcccchhhhh-----ccccccccccCccCcc
Confidence            46789999999999999999998    88889999999999999999999987777766     7899999999999999


Q ss_pred             hHHHHHhC
Q 041107          167 AEHIYRYG  174 (374)
Q Consensus       167 ~l~~a~~~  174 (374)
                      |++++...
T Consensus       725 ~l~~a~~~  732 (785)
T KOG0521|consen  725 PLDIAMEA  732 (785)
T ss_pred             hhhHHhhh
Confidence            99998554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.13  E-value=3.7e-06  Score=80.32  Aligned_cols=63  Identities=19%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107           16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE   80 (374)
Q Consensus        16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   80 (374)
                      .+.+|+|+||+||+.|++.+.++|+=+|.|+ ..+|. .|+|+|.||-+.|..+++..|+++|..
T Consensus       657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda-~g~t~l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  657 GEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDA-HGRTALFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             cCCCCcchhhhhhhhcchhHHHHHHHhCccc-eeccc-CCchhhhhHhhcccHHHHHHHHHcCCC
Confidence            3557899999999999999999999999999 99999 999999999999999999999999854

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.06  E-value=3.3e-06  Score=86.55  Aligned_cols=87  Identities=20%  Similarity=0.188  Sum_probs=72.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL  133 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A  133 (374)
                      .|.|+||.|+..|...++++|+++++++ +..|..|+||||.+...|+......++    +.+++.+..|.+|.+||++|
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll----~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLL----KRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhc----cccccccccCccCcchhhHH
Confidence            6788999999999999999999999885 888999999999999998888888877    78888999999999999999


Q ss_pred             Hhhcccccccee
Q 041107          134 AAVCRQSYDARY  145 (374)
Q Consensus       134 ~~~g~~~~~~~l  145 (374)
                      ....+...+-.+
T Consensus       730 ~~~~~~d~~~l~  741 (785)
T KOG0521|consen  730 MEAANADIVLLL  741 (785)
T ss_pred             hhhccccHHHHH
Confidence            776444444333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.94  E-value=7.7e-06  Score=83.63  Aligned_cols=118  Identities=23%  Similarity=0.149  Sum_probs=84.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHh-CCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHH
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDH-CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV  132 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~  132 (374)
                      .|++-+|+++..++...++.+++- +.. ....|.+|...+|.++.. ..+..-+++   ...|..++.+|..|+||||+
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hfca~l-g~ewA~ll~---~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHFCAAL-GYEWAFLPI---SADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhHhhhc-CCceeEEEE---eecccccccccCCCCcccch
Confidence            789999999999999999999986 333 366788999999995544 444444443   15678899999999999999


Q ss_pred             HHhhccccccceeeecccccccc--ccccccCCCCChHHHHHhCCCc
Q 041107          133 LAAVCRQSYDARYDIVPWKIAKA--HFQATNKQNISAEHIYRYGFPD  177 (374)
Q Consensus       133 A~~~g~~~~~~~l~L~~~l~~g~--~~~~~n~~g~t~l~~a~~~~~~  177 (374)
                      |+..|+...+..+ .-.....++  |+...+-.|.|+.+++...+++
T Consensus       648 Aa~~G~e~l~a~l-~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~  693 (975)
T KOG0520|consen  648 AAFRGREKLVASL-IELGADPGAVTDPSPETPGGKTAADLARANGHK  693 (975)
T ss_pred             HhhcCHHHHHHHH-HHhccccccccCCCCCCCCCCchhhhhhccccc
Confidence            9999986665544 100112222  3334456689999998776665

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.92  E-value=7e-06  Score=83.91  Aligned_cols=127  Identities=15%  Similarity=0.090  Sum_probs=94.8

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHhhc-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc
Q 041107           13 TRERDRHGWTPLHYAVYLDRCFISKCLLEA-DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWN   91 (374)
Q Consensus        13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t   91 (374)
                      .....-.|+|-||+++..++...++.+++- +... ...|. +|...+|+++. ++.+..-+++.-.....+.+|.+|+|
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~-d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G~t  643 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDR-DGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNGWT  643 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcc-cCCChhhHhhh-cCCceeEEEEeecccccccccCCCCc
Confidence            344455799999999999999999999985 5554 66677 88888888554 55566555555444445899999999


Q ss_pred             HHHHHHHhccHHHHHhHHhhcccchh--hhcccCCCCCcHHHHHHhhcccccc
Q 041107           92 VLHFAMVSFYARDLKHLVDKYPAVRN--LIFKKDVKGNTPFHVLAAVCRQSYD  142 (374)
Q Consensus        92 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~--~~n~~d~~G~T~LH~A~~~g~~~~~  142 (374)
                      |||+|+.+|+..++..|++.....+.  +++..+-.|-|+--+|-..|+..+.
T Consensus       644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia  696 (975)
T KOG0520|consen  644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIA  696 (975)
T ss_pred             ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchH
Confidence            99999999999999999843333333  4445556799999999888875443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.85  E-value=3.9e-05  Score=70.09  Aligned_cols=73  Identities=18%  Similarity=0.135  Sum_probs=63.0

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh
Q 041107           23 PLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS   99 (374)
Q Consensus        23 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~   99 (374)
                      -|..||+.|+.+.|++|++.|.++ |.+|+ ....||.+|+-.||.+++++|+++|+-| ..-.-+|.-. |+++.+
T Consensus        39 elceacR~GD~d~v~~LVetgvnV-N~vD~-fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNV-NAVDR-FDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALN  111 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCc-chhhc-ccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhh
Confidence            489999999999999999999999 99999 9999999999999999999999999976 4334466655 555555

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.84  E-value=3.7e-05  Score=63.82  Aligned_cols=66  Identities=18%  Similarity=0.077  Sum_probs=59.8

Q ss_pred             CcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhh
Q 041107           44 KSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDK  111 (374)
Q Consensus        44 ~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  111 (374)
                      .++ +.+|. .||||++.|+..|+.+.+.+|+.+|..-....|..|.+++.+|-+.|..++++.|.+.
T Consensus         3 ~~i-n~rD~-fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNI-NARDA-FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCc-cchhh-hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            345 88999 9999999999999999999999999555589999999999999999999999999743

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.58  E-value=0.00014  Score=73.13  Aligned_cols=100  Identities=22%  Similarity=0.128  Sum_probs=69.8

Q ss_pred             hHHHHhhCCc---cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 041107            2 PLLLLDKKKS---LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC   78 (374)
Q Consensus         2 ~~~lL~~~~~---~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~   78 (374)
                      |+++|+....   ++|.+|.-|+++||.|....+.|++++|++++.+.         ..+|.+|...|.++.++.++.+.
T Consensus        41 V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~---------gdALL~aI~~~~v~~VE~ll~~~  111 (822)
T KOG3609|consen   41 VAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE---------GDALLLAIAVGSVPLVELLLVHF  111 (822)
T ss_pred             HHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc---------chHHHHHHHHHHHHHHHHHHhcc
Confidence            4555554433   57777888888888888888888888888765443         24677888888888888888764


Q ss_pred             CCcc---------ccccCCCCcHHHHHHHhccHHHHHhHHh
Q 041107           79 PECC---------EVVDDRGWNVLHFAMVSFYARDLKHLVD  110 (374)
Q Consensus        79 ~~~~---------~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~  110 (374)
                      ....         ...-..+-|||.+||..++.|++++|++
T Consensus       112 ~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~  152 (822)
T KOG3609|consen  112 VDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLT  152 (822)
T ss_pred             cccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHH
Confidence            3320         1112346788888888888888888874

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.54  E-value=0.00019  Score=72.21  Aligned_cols=126  Identities=14%  Similarity=0.006  Sum_probs=96.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCc---ccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKS---AALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA   96 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   96 (374)
                      +.--.-.|+..|+...|+..++....   ..+.+|. -|+++||.|..+.+.|++++|+++.-..        ..+|.+|
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~-lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~a   95 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDP-LGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLA   95 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccCh-HhhhceecccccccHHHHHHHhcCcccc--------chHHHHH
Confidence            33445789999999999999984433   2277888 9999999999999999999999986553        4689999


Q ss_pred             HHhccHHHHHhHHhhcccchhh------hcccCCCCCcHHHHHHhhccccccceeeecccccccccccc
Q 041107           97 MVSFYARDLKHLVDKYPAVRNL------IFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQA  159 (374)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~------~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~  159 (374)
                      +..+..++++.++.+....+..      ....-..+-|||.+||..++.++.+.|     +++|+++..
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~L-----l~kg~~i~~  159 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCL-----LTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHH-----HHcCCCCCC
Confidence            9999999999998643221111      111224578999999999888888766     677766543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.12  E-value=0.0011  Score=60.87  Aligned_cols=69  Identities=19%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcH
Q 041107           56 MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTP  129 (374)
Q Consensus        56 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~  129 (374)
                      .--|..||+.|..+.++.|++.|.++ +.+|+...+||.+|+..|+..++++|+    ++|+....-.-+|...
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLL----enGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLL----ENGAICSRDTFDGDRC  105 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHH----HcCCcccccccCcchh
Confidence            44688999999999999999999986 999999999999999999999999999    7777666555566554

>smart00248 ANK ankyrin repeats

Probab=96.88  E-value=0.0016  Score=36.10  Aligned_cols=26  Identities=35%  Similarity=0.401  Sum_probs=14.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCc
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKS   45 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~   45 (374)
                      |.||+|+|+..|+.++++.|++++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.64  E-value=0.0032  Score=34.84  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=23.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      .|.||+|+|+..|+.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3678999999999999999999887753

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.82  E-value=0.013  Score=55.90  Aligned_cols=68  Identities=19%  Similarity=0.052  Sum_probs=50.8

Q ss_pred             HHHHHHHhhcCCcccccc------cCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHH
Q 041107           33 CFISKCLLEADKSAALIS------DEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYAR  103 (374)
Q Consensus        33 ~~~v~~Ll~~~~~~~~~~------d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  103 (374)
                      ...+++|.+++.+. +..      +. --.|+||+|+..|..+++.+||+.++|. ...|..|+||..++.......
T Consensus       404 p~~ie~lken~lsg-nf~~~pe~~~~-ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~nkdVk~  477 (591)
T KOG2505|consen  404 PDSIEALKENLLSG-NFDVTPEANDY-LTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSANKDVKS  477 (591)
T ss_pred             hhHHHHHHhcCCcc-ccccccccccc-ccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccccHHHHH
Confidence            55677777776665 221      22 3468999999999999999999999885 788999999988887543333

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.58  E-value=0.015  Score=55.55  Aligned_cols=54  Identities=26%  Similarity=0.124  Sum_probs=44.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHH
Q 041107           17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII   75 (374)
Q Consensus        17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll   75 (374)
                      |..-.|+||+|+.+|..++|.+||+.+.|+ ..+|. .|+||..+++   +.|+=..++
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~-~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDG-AGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCc-hhccc-CCCCcccccc---cHHHHHHHH
Confidence            344679999999999999999999999998 89999 9999999987   334444444

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.81  E-value=2.7  Score=30.23  Aligned_cols=49  Identities=18%  Similarity=0.094  Sum_probs=33.8

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhcc
Q 041107          275 SFVVSDAIAMVLSLSAVFVHFILSLKFFRKFIFLFVFALSFTLVAMAAMIVAFVTGTYAVLA  336 (374)
Q Consensus       275 ~F~~~n~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~m~~af~~~~~~v~~  336 (374)
                      +++++|.+||..|...+.+.++-.+.+.+.             =...+|...|..|+-+.+.
T Consensus        15 awi~f~waafg~s~~m~~~gi~~lPVD~w~-------------KGy~~MG~lfltgSt~tL~   63 (95)
T COG4298          15 AWIMFNWAAFGASYFMLGLGIWLLPVDLWT-------------KGYWAMGILFLTGSTVTLV   63 (95)
T ss_pred             hhHhHHHHHHHHHHHHHHHHhheechHHHH-------------HHHHHHHHHHHhcchhhhh
Confidence            567899999999999988877666554431             1234577777777766554

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=83.32  E-value=13  Score=30.56  Aligned_cols=35  Identities=37%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             cccccCCccchhhhhhchHHHHHHHHHHHHHHHhh
Q 041107          264 TAILSKNAAFQSFVVSDAIAMVLSLSAVFVHFILS  298 (374)
Q Consensus       264 ~~~l~~~~~F~~F~~~n~~a~~~S~~~~~~~~~~~  298 (374)
                      +.-+.+.++|+.|+..|.++...|+..+...+...
T Consensus        35 ~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~   69 (154)
T TIGR01569        35 KAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGL   69 (154)
T ss_pred             eeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999998865544

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	374
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-05
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-04

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 17  DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
           D  GWTPLH A Y     I + LL+    A + +D+   +T LHLAA RG + +V+ ++ 
Sbjct: 44  DHVGWTPLHLAAYFGHLEIVEVLLK--NGADVNADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 77  HCPECCEVVDDRGWNVLHFA 96
           +  +     D  G+  LH A
Sbjct: 102 NGAD-VNANDHNGFTPLHLA 120

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 16  RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEI 74
           RD  GWTPLH A +     I + LL   K+ A ++ +D   +T LHLAA RG + +V+ +
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 75  IDHCPECCEVVDDRGWNVLHFA 96
           + +  +     D  G+  LH A
Sbjct: 100 LKNGAD-VNASDSHGFTPLHLA 120

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 20  GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP 79
           G TPLH A       + K LLEA   A + + +    T LHLAA  G + +V+ +++   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 80  ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLA 134
           +     D  G   LH A  + +   +K L++    V      KD  G TP H+ A
Sbjct: 60  D-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN----AKDKNGRTPLHLAA 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	374
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
2pnn_A	273	Transient receptor potential cation channel subfa	6e-11
2pnn_A	273	Transient receptor potential cation channel subfa	8e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-08
2pnn_A	273	Transient receptor potential cation channel subfa	3e-07
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-10
2etb_A	256	Transient receptor potential cation channel subfam	3e-09
2etb_A	256	Transient receptor potential cation channel subfam	3e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-06
2rfa_A	232	Transient receptor potential cation channel subfa	9e-10
2rfa_A	232	Transient receptor potential cation channel subfa	7e-09
2rfa_A	232	Transient receptor potential cation channel subfa	3e-08
2rfa_A	232	Transient receptor potential cation channel subfa	1e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-04

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 66.7 bits (164), Expect = 3e-13
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 24/143 (16%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           E D  G TPL+ AV+ +   I+K L++  AD +     +     +    A  +G   ++ 
Sbjct: 34  EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ---NSISD-SPYLYAGAQGRTEILA 89

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA-------MVSFYARDLKHLVDKYPAVRNLIFKKDVK 125
            ++ H        +  G N L  A        V       K L++      +    ++  
Sbjct: 90  YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV-------KLLLEDGREDID---FQNDF 139

Query: 126 GNTPFHVLAAVCRQSYDARYDIV 148
           G T     A   R+      DIV
Sbjct: 140 GYTALI-EAVGLREGNQLYQDIV 161

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE---ADKSAALISDEDRKMTALH 60
            +L        + +R+G   L  A         K LLE    D       ++    TAL 
Sbjct: 90  YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ---NDFGY-TALI 145

Query: 61  LAAGRGDVW-----MVQEIIDHCPECCEVVDDRGWNVLHFA 96
            A G  +       +V+ ++++  +   + D+ G   + +A
Sbjct: 146 EAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 48.2 bits (116), Expect = 7e-07
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 15  ERDRHGWTPLHYAVYLDRCF-----ISKCLLE--ADKSAALISDEDRKMTALHLAAGRGD 67
            ++  G+T L  AV L         I K L+E  AD+S     D   + TA+  A  +G 
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK---DNSGR-TAMDYANQKGY 190

Query: 68  VWMVQEIIDH 77
             + + +  +
Sbjct: 191 TEISKILAQY 200

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 30/142 (21%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            ++    TPLH AV  ++  I++ LL    D       D     T LHLA  +G +  V 
Sbjct: 40  FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGN-TPLHLACEQGCLASVG 95

Query: 73  EIIDHCPECC-----EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI-------F 120
            +   C         +  +  G   LH A  S +     +L      V  L+        
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLA--SIH----GYL----GIVELLVSLGADVNA 145

Query: 121 KKDVKGNTPFHVLAAVCRQSYD 142
           ++   G T  H+  AV  Q+ D
Sbjct: 146 QEPCNGRTALHL--AVDLQNPD 165

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 22/133 (16%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALIS--------DEDRKMTALHLAAGRG 66
           +    G + LH A+  +   ++  ++       +          +  ++ T LHLA    
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIR-----QVKGDLAFLNFQNNLQQ-TPLHLAVITN 56

Query: 67  DVWMVQEIIDHCPECCEV--VDDRGWNVLHFAMVSFYARDLKHLVDK--YPAVRNLIFKK 122
              + + ++      C+    D RG   LH A        +  L      P + +++   
Sbjct: 57  QPEIAEALLGA---GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 113

Query: 123 DVKGNTPFHVLAA 135
           +  G+T  H LA+
Sbjct: 114 NYNGHTCLH-LAS 125

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             + +G T LH A       I + L+   AD +A    +     TALHLA    +  +V 
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ---EPCNGRTALHLAVDLQNPDLVS 168

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            ++    +    V  +G++     
Sbjct: 169 LLLKCGAD-VNRVTYQGYSPYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK----MTALHLAAGRGDVWM 70
            RD  G TPLH A           L ++  +  L S          T LHLA+  G + +
Sbjct: 73  LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132

Query: 71  VQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDL-KHLVDKYPAVRNLIFKKDVKGNTP 129
           V+ ++    +        G   LH A V     DL   L+     V N   +   +G +P
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLA-VDLQNPDLVSLLLKCGADV-N---RVTYQGYSP 187

Query: 130 FHVLAA 135
           +  L  
Sbjct: 188 YQ-LTW 192

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
             +G T LH AV L    +   LL+  AD +           +   L  GR    + Q++
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV---TYQGY-SPYQLTWGRPSTRIQQQL 203

Query: 75  IDH 77
              
Sbjct: 204 GQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 7/51 (13%), Positives = 12/51 (23%), Gaps = 6/51 (11%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAA 63
                G++P           I + L +   +    L   ED          
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED----EESYDT 225

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.0 bits (156), Expect = 7e-12
 Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 29/162 (17%)

Query: 4   LLLDKKKSLT---RERDRHGWTPLHYAVYLDRCF---ISKCLLEADKSA--------ALI 49
            LL  KK LT         G T L  A+             LL+  +          +  
Sbjct: 27  FLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86

Query: 50  SDEDRK-MTALHLAAGRGDVWMVQEIIDH-------------CPECCEVVDDRGWNVLHF 95
            D   +  TALH+A  R     V+ +++               P+        G   L  
Sbjct: 87  RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSL 146

Query: 96  AMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC 137
           A  +     + +L +      + + ++D +GNT  H L A+ 
Sbjct: 147 AACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 60.6 bits (147), Expect = 9e-11
 Identities = 31/149 (20%), Positives = 47/149 (31%), Gaps = 29/149 (19%)

Query: 14  RERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSA----------ALISDEDRKMTALHL 61
           R+    G T LH A+        + L+E  AD  A                      L L
Sbjct: 87  RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSL 146

Query: 62  AAGRGDVWMVQEIIDHCPECCEV--VDDRGWNVLHFA-------------MVSFYARDLK 106
           AA      +V  + ++  +  ++   D RG  VLH               +   Y   L 
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206

Query: 107 HLVDKYPAVRNLIFKKDVKGNTPFHVLAA 135
                +P   NL    +  G +P   +AA
Sbjct: 207 KCAKLFPDT-NLEALLNNDGLSPLM-MAA 233

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 18/91 (19%)

Query: 4   LLLDKKKSL--TRERDRHGWTPLHYAVYL---------DRCFISKCLLE------ADKSA 46
            L +        R +D  G T LH  V +             +   LL        D + 
Sbjct: 158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217

Query: 47  ALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77
             + + D   + L +AA  G + + Q II  
Sbjct: 218 EALLNNDGL-SPLMMAAKTGKIGIFQHIIRR 247

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 26/154 (16%)

Query: 1   VPLLLLDKKKSLTR------ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDE 52
              L++ + K            D    TPL  AV   R  +   L++  AD +     ++
Sbjct: 141 SEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY---NK 197

Query: 53  DRKMTALHLAAGRGDVWMVQEIIDHCPECCEV--VDDRGWNVLHFAMVSFYARDLKHLVD 110
             + +ALH AA   D  M+  +++      ++  +D  G   L     +      +    
Sbjct: 198 SER-SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV--AHNEGRDQVASA 254

Query: 111 KY---------PAVRNLIFKKDVKGNTPFHVLAA 135
           K                   +  KG T  H  AA
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALH-YAA 287

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 15  ERDRHGWTPLHYAVY---LDRCFISKCLLE--ADKSAALISDEDRK----MTALHLAAGR 65
           E DR+G T L    +    D+   +K L+E  A       + +D +     TALH AA  
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289

Query: 66  GDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK---- 121
            ++ +V+ ++       +  D+ G   +  A  +           +   V  LI +    
Sbjct: 290 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA--AQE--------GRIEVVMYLIQQGASV 339

Query: 122 --KDVKGNTPFHV 132
              D   +T   +
Sbjct: 340 EAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 24/136 (17%), Positives = 37/136 (27%), Gaps = 32/136 (23%)

Query: 15  ERDRHGWTPLHYAVY--LDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           E +      LH           I++ +         I D     T LH  A        +
Sbjct: 89  EPEPESPIKLHTEAAGSYA---ITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSE 142

Query: 73  EIIDHCPECC-------EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK---- 121
           ++I H  + C         +D      L  A      R  + LV  Y     L+      
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLA--VLARR--RRLV-AY-----LMKAGADP 192

Query: 122 --KDVKGNTPFHVLAA 135
              +    +  H  AA
Sbjct: 193 TIYNKSERSALH-QAA 207

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 16/128 (12%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQE 73
           E   +   P          F+            + ++ + +    LH  A  G   + + 
Sbjct: 56  ELQHYSLYPNPQGYGNGNDFLGDFNHTNL---QIPTEPEPESPIKLHTEA-AGSYAITEP 111

Query: 74  IIDHCPECCEVVDDRGWNVLHFAMVSFY-----ARDLKHLVDKYPAVRNL-IFKKDVKGN 127
           I        +        VLH+   +       + DL     K        +   D   N
Sbjct: 112 ITRESVNIID--PRHNRTVLHWI--ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 167

Query: 128 TPFHVLAA 135
           TP   LA 
Sbjct: 168 TPLM-LAV 174

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 8   KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE---ADKSAALISDEDRKMTALHLAAG 64
              +        G T LHYA  +    I K L+    ++K      DED K T + LAA 
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ---DEDGK-TPIMLAAQ 322

Query: 65  RGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96
            G + +V  +I       E VD         A
Sbjct: 323 EGRIEVVMYLIQQGAS-VEAVDATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           ++D  G TP+  A    R  +   L++  A   A    D     TA  LA       +V 
Sbjct: 308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV---DATDH-TARQLAQANNHHNIVD 363

Query: 73  EIIDH 77
                
Sbjct: 364 IFDRC 368

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           +    G T LH AV      +S+ L+E  A        D+  +   LH AA  G + +++
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK---DKFNQ-IPLHRAASVGSLKLIE 157

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
            +           D +GW  L  A+   +      LV+KY A  +     D KG     V
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD---LVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.3 bits (150), Expect = 4e-11
 Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 27/132 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE----ADKSAALISDEDRKMTALHLAAGRGDVWM 70
             D  GWTP H A  +    + K L +     D +           T LHLA G+    +
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI---TNQGV-TCLHLAVGKKWFEV 122

Query: 71  VQEIIDHCPECCEVVDDRGWNVLHFA-------MVSFYARDLKHLVDKYPAVRNLIFKKD 123
            Q +I++      + D      LH A       ++       + L     +  N    +D
Sbjct: 123 SQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLI-------ELLCGLGKSAVN---WQD 171

Query: 124 VKGNTPFHVLAA 135
            +G TP    A 
Sbjct: 172 KQGWTPLF-HAL 182

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 21/130 (16%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           ++D+ G  PLH++V      I+  LL    + +     D+    T  H+A   G++ +V+
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW-TPFHIACSVGNLEVVK 89

Query: 73  EIIDHCPEC-CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVK 125
            + D   +     + ++G   LH A         K         + LI        KD  
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLA--VGK----KWF----EVSQFLIENGASVRIKDKF 139

Query: 126 GNTPFHVLAA 135
              P H  AA
Sbjct: 140 NQIPLHR-AA 148

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.4 bits (127), Expect = 4e-08
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 16/123 (13%)

Query: 20  GWTPLHYAVYLDRCF-ISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
              PLH A   +  F + + L    +        D+D +   LH +       +   ++ 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQK---DQDGR-IPLHWSVSFQAHEITSFLLS 57

Query: 77  HC--PECCEVVDDRGWNVLHFAMVSFYARD--LKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
                   +  DD GW   H A          +K L D+       + K   +G T  H 
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIA--CSVGNLEVVKSLYDRPLKPD--LNKITNQGVTCLH- 112

Query: 133 LAA 135
           LA 
Sbjct: 113 LAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQE 73
            +D+    PLH A  +    + + L       + ++ +D++  T L  A   G       
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192

Query: 74  IIDHCPECCEVVDDRGWNVLHFA 96
           +++      ++VD++G      A
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.9 bits (110), Expect = 5e-06
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE---ADKSAALISDEDRKMTALH 60
           LL    KS    +D+ GWTPL +A+       +  L+E   A+       D      A  
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV---DNKGA-KAED 213

Query: 61  LAA 63
           +A 
Sbjct: 214 VAL 216

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.7 bits (151), Expect = 4e-11
 Identities = 27/129 (20%), Positives = 42/129 (32%), Gaps = 12/129 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE------ADKSAALISDEDRKMTALHLAAGRGDV 68
             D  G TPLH AV          L+        +       +  R+ T LHLA      
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY---NNLRQ-TPLHLAVITTLP 59

Query: 69  WMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNT 128
            +V+ ++         +D  G    H A        L+ L+D        +  ++  G T
Sbjct: 60  SVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118

Query: 129 PFHVLAAVC 137
             H +A   
Sbjct: 119 ALH-VAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 58.6 bits (143), Expect = 4e-10
 Identities = 38/143 (26%), Positives = 50/143 (34%), Gaps = 26/143 (18%)

Query: 4   LLLDKKKSLTR---ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTA 58
            LLD     T     R+  G T LH AV  +     + LLE  AD  A    D     + 
Sbjct: 97  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV---DIKSGRSP 153

Query: 59  LHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNL 118
           L  A     + MVQ ++ H           G + LH A  S        L    P VR L
Sbjct: 154 LIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSA--SGR----GLL----PLVRTL 202

Query: 119 IFK------KDVKGNTPFHVLAA 135
           +        K+   +TP   +A 
Sbjct: 203 VRSGADSSLKNCHNDTPLM-VAR 224

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.5 bits (135), Expect = 4e-09
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 23/131 (17%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK----MTALHLAAGRGDVWM 70
             DRHG T  H A         + LL+   +A    D + +    +TALH+A        
Sbjct: 74  ALDRHGQTAAHLACEHRSPTCLRALLD--SAAPGTLDLEARNYDGLTALHVAVNTECQET 131

Query: 71  VQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDV 124
           VQ +++   +   V    G + L  A           L      V+ L+        +  
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHA--VEN----NSL----SMVQLLLQHGANVNAQMY 181

Query: 125 KGNTPFHVLAA 135
            G++  H  A+
Sbjct: 182 SGSSALHS-AS 191

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.6 bits (117), Expect = 9e-07
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            +   G + LH A       + + L+   AD S     +     T L +A  R  + +++
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK---NCHND-TPLMVARSRRVIDILR 233

Query: 73  EIIDH 77
                
Sbjct: 234 GKATR 238

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 60.1 bits (147), Expect = 4e-11
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            +DR G+  +H A         + LLE  AD +     D +     LHLAA  G + +V+
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE---DNEGN-LPLHLAAKEGHLRVVE 120

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            ++ H        + +G      A
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.2 bits (129), Expect = 8e-09
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 15  ERDRHGWTPLHYAVY--LDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWM 70
            ++  G T L        +   I++ LL   A+       D       +H AA  G +  
Sbjct: 33  AQNGFGRTALQVMKLGNPE---IARRLLLRGANPDLK---DRTGF-AVIHDAARAGFLDT 85

Query: 71  VQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK-------KD 123
           +Q +++   +   + D+ G   LH A  +       HL      V  L+         ++
Sbjct: 86  LQTLLEFQAD-VNIEDNEGNLPLHLA--AKE----GHL----RVVEFLVKHTASNVGHRN 134

Query: 124 VKGNTPFHVLAA 135
            KG+T    LA 
Sbjct: 135 HKGDTACD-LAR 145

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 29/126 (23%)

Query: 20  GWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAA-GRGDVWMVQEIID 76
               L  A           LL+   + +A    +   + TAL +   G  ++   + ++ 
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQ---NGFGR-TALQVMKLGNPEI--ARRLLL 58

Query: 77  HCPECCEVVDDRGWNVLHFAMVSFYARDLKHL-VDKYPAVRNLIFK------KDVKGNTP 129
                 ++ D  G+ V+H A  +        L   +      L+        +D +GN P
Sbjct: 59  RGAN-PDLKDRTGFAVIHDA--ARA----GFLDTLQT-----LLEFQADVNIEDNEGNLP 106

Query: 130 FHVLAA 135
            H LAA
Sbjct: 107 LH-LAA 111

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQE 73
             D  G  PLH A       + + L++   +A+ +   + K  TA  LA   G   +V  
Sbjct: 98  IEDNEGNLPLHLAAKEGHLRVVEFLVK--HTASNVGHRNHKGDTACDLARLYGRNEVVSL 155

Query: 74  IIDH 77
           +  +
Sbjct: 156 MQAN 159

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 11/122 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D+   T LH+A       I + LL+     +     D+    + LH+AA  G   +V+
Sbjct: 35  RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK---DDAGW-SPLHIAASAGXDEIVK 90

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
            ++         V+  G   LH+A           L++           KD    T  H 
Sbjct: 91  ALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD----AKDHYDATAMHR 145

Query: 133 LA 134
            A
Sbjct: 146 AA 147

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 14/157 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
           ++D  GW+PLH A       I K LL   K A + +      T LH AA +    +   +
Sbjct: 68  DKDDAGWSPLHIAASAGXDEIVKALLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLA 134
           ++      +  D      +H A      + +  L+    +       +D +GNTP H+  
Sbjct: 126 LEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN----IQDTEGNTPLHLAC 180

Query: 135 AVCRQSYDARYDIVPWKIAK-AHFQATNKQNISAEHI 170
                  + R +   + + + A     NK+  +   +
Sbjct: 181 ------DEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAG 64
            L  K +     +++G TPLHYA   +R  I+  LLE    A   + +    TA+H AA 
Sbjct: 91  ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE--GGANPDAKDHYDATAMHRAAA 148

Query: 65  RGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDV 124
           +G++ MV  ++ +      + D  G   LH A       + K LV +  ++      ++ 
Sbjct: 149 KGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY----IENK 203

Query: 125 KGNTPFHVLA 134
           +  TP  V  
Sbjct: 204 EEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 23/199 (11%)

Query: 20  GWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77
                + A       + + +L   +  +     D+D + TALH A   G   +V+ ++  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRT---DQDSR-TALHWACSAGHTEIVEFLLQL 62

Query: 78  CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC 137
                   DD GW+ LH A  +        +V         +   +  G TP H  A   
Sbjct: 63  GVP-VNDKDDAGWSPLHIA--ASA--GXDEIVKALLVKGAHVNAVNQNGCTPLHYAA--- 114

Query: 138 RQSYDARYDIVPWKIAK-AHFQATNKQNISAEHI-YRYGFPDLEQEI----QELSKADGS 191
                 R++I    +   A+  A +  + +A H     G   +   +       +  D  
Sbjct: 115 ---SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171

Query: 192 GQYPDGVVKMNKNKKIANY 210
           G  P  +    +  + A +
Sbjct: 172 GNTPLHLACDEERVEEAKF 190

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 20/121 (16%), Positives = 32/121 (26%), Gaps = 22/121 (18%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
            ++R G T LH A        +K L        + S    +   +HLA       +V  +
Sbjct: 48  IQNRFGCTALHLACKFGCVDTAKYLASVG---EVHSLWHGQ-KPIHLAVMANKTDLVVAL 103

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLA 134
           ++          +RG                +               K  KG T  H   
Sbjct: 104 VEGA-------KERGQMPESLLNECDEREVNEIGSH----------VKHCKGQTALH-WC 145

Query: 135 A 135
            
Sbjct: 146 V 146

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.1 bits (144), Expect = 6e-10
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 21/133 (15%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLA 62
           + D  K    + D      +H A    +    + L+E     +     +     TALHLA
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ---NRF-GCTALHLA 60

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDR-GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK 121
              G V   + +               G   +H A                  V  L+  
Sbjct: 61  CKFGCVDTAKYLASVGEV----HSLWHGQKPIHLA--VMA----NKT----DLVVALVEG 106

Query: 122 KDVKGNTPFHVLA 134
              +G  P  +L 
Sbjct: 107 AKERGQMPESLLN 119

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 19/125 (15%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRK-MTALHLAAGRGDVWMV 71
            +D+   TPL  A+          +++    KS+  +   +++  + LH A       + 
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227

Query: 72  QEIIDHCPECCEVVDDRGWNVLHFA-------MVSFYARDLKHLVDKYPAVRNLIFKKDV 124
              ++   +   + D+     L+ +       +        K L+ K   V  +      
Sbjct: 228 MRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLT-------KELLQK-TDVFLIQACPYH 278

Query: 125 KGNTP 129
            G T 
Sbjct: 279 NGTTV 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 29/171 (16%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             ++ G + LH+A+ ++   ++   +E   D +     D +     L+L+     V + +
Sbjct: 206 YANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME---DNEHT-VPLYLSVRAAMVLLTK 261

Query: 73  EIIDHC--PECCEVVDDRGWNVLHFAMVSF----YARDLKHLVDKYPAVRNLIFK----- 121
           E++               G  VL   +V       A D          ++ L  K     
Sbjct: 262 ELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE----VLQLLQEKLDEVV 317

Query: 122 -KDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAK-AHFQATNKQNISAEHI 170
                G                A   +   K+A  A  +  ++    +  +
Sbjct: 318 RSLNTGAGGAVK-RK-----KKAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 30/125 (24%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
             HG  P+H AV  ++  +   L+E    A      +R      L     +  + +    
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVEG---AK-----ERGQMPESLLNECDEREVNEIGSH 132

Query: 77  HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPF 130
                  V   +G   LH+        +   ++ K      L+        KD    TP 
Sbjct: 133 -------VKHCKGQTALHWC--VGLGPEYLEMI-KI-----LVQLGASPTAKDKADETPL 177

Query: 131 HVLAA 135
              A 
Sbjct: 178 MR-AM 181

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 29/135 (21%)

Query: 15  ERDRHGWTPLHYAVYLDRCF--ISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWM 70
            +   G T LH+ V L   +  + K L++  A  +A    D+  + T L  A    +   
Sbjct: 133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK---DKADE-TPLMRAMEFRNREA 188

Query: 71  VQEIIDHCPECC----EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK----- 121
           +  ++D  P       +  + +G + LH+A             +        +       
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWA--ILI--------NWEDVAMRFVEMGIDVN 238

Query: 122 -KDVKGNTPFHVLAA 135
            +D +   P + L+ 
Sbjct: 239 MEDNEHTVPLY-LSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 3/84 (3%), Positives = 14/84 (16%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
                    +  A    +  + + L E   +   +                 +    + +
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRS---LNTGA-GGAVKRKKKAAPAVKR 340

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
             +                    +
Sbjct: 341 MKLAPSAP-VRTRSRSRARSSAVS 363

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 34/174 (19%), Positives = 51/174 (29%), Gaps = 43/174 (24%)

Query: 1   VPLLLLDKKKSL----------TRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAA- 47
              LLLD  +              +    G T LH A+      +   L+E  AD  AA 
Sbjct: 72  TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131

Query: 48  ---------LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEV--VDDRGWNVLHFA 96
                               L LAA    + +V+ ++ +  +  ++   D  G  VLH  
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191

Query: 97  ---------MVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPFHVLAA 135
                       F       ++        L          + KG TP   LAA
Sbjct: 192 VEVADNTVDNTKFVTSMYNEILIL---GAKLHPTLKLEEITNRKGLTPLA-LAA 241

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 26/145 (17%)

Query: 15  ERDRHGWTPLHYAVYLDRC---FISKCLLEADKS---------AALISDEDRKMTALHLA 62
           +    G T L  A+             LL+  +          A+      +  TALH+A
Sbjct: 49  KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA 108

Query: 63  AGRGDVWMVQEIIDH-------------CPECCEVVDDRGWNVLHFAMVSFYARDLKHLV 109
             R ++ +V  ++++                        G   L  A  +     +K L+
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168

Query: 110 DKYPAVRNLIFKKDVKGNTPFHVLA 134
                  + I  +D  GNT  H L 
Sbjct: 169 QNSWQPAD-ISARDSVGNTVLHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 28/143 (19%)

Query: 9   KKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGD 67
           KK+  R     G  PL  A   ++  I K LL+     A IS  D    T LH      D
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196

Query: 68  ---------VWMVQEIIDHC------PECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKY 112
                      M  EI+          +  E+ + +G   L  A  +        +    
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA--ASSG----KIG--- 247

Query: 113 PAVRNLIFKKDVKGNTPFHVLAA 135
             +  ++ ++++      H  AA
Sbjct: 248 -VLAYIL-QREIHEPECRH-AAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 24/109 (22%)

Query: 4   LLLDKKKSL--TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALIS----------D 51
            LL           RD  G T LH  V +    +            ++            
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225

Query: 52  EDRK----MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96
           E+      +T L LAA  G + ++  I+          +       H A
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 9/62 (14%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAG 64
            L     L    +R G TPL  A    +  +   +L+ +           +    H AA 
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH---------EPECRHAAAH 268

Query: 65  RG 66
             
Sbjct: 269 HH 270

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.9 bits (149), Expect = 7e-11
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 23/126 (18%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            R   G TPL  A  L    + + L+   AD +A    D+  K +ALH AA   +V    
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV---DDLGK-SALHWAAAVNNVDAAV 174

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKG 126
            ++ +     ++ ++R    L  A  +            Y   + L+         D   
Sbjct: 175 VLLKNGAN-KDMQNNREETPLFLA--ARE--------GSYETAKVLLDHFANRDITDHMD 223

Query: 127 NTPFHV 132
             P  +
Sbjct: 224 RLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 33/140 (23%), Positives = 48/140 (34%), Gaps = 23/140 (16%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
             + +  SL  + DR G T LH A    R   +K LLE  AD +     D   + T LH 
Sbjct: 41  DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGR-TPLHA 96

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD------LKHLVDKYPAV 115
           A       + Q +I +     +     G   L  A  +  A +      +    D     
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILA--ARLAVEGMLEDLINSHAD----- 149

Query: 116 RNLIFKKDVKGNTPFHVLAA 135
              +   D  G +  H  AA
Sbjct: 150 ---VNAVDDLGKSALH-WAA 165

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 31/141 (21%), Positives = 45/141 (31%), Gaps = 33/141 (23%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAA----LIS---------DEDRKMTALHL 61
            R   G+TPL  A        +    E + + A     I          D   + TALHL
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE-TALHL 63

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK 121
           AA        + +++   +   + D+ G   LH A             D     + LI  
Sbjct: 64  AARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAA--VSA--------DAQGVFQILIRN 112

Query: 122 -------KDVKGNTPFHVLAA 135
                  +   G TP   LAA
Sbjct: 113 RATDLDARMHDGTTPLI-LAA 132

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            ++    TPL  A        +K LL+  A++      D   +     +A  R    +V+
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLDHFANRDIT---DHMDR-LPRDIAQERMHHDIVR 240

Query: 73  EIIDH 77
            +   
Sbjct: 241 LLDLE 245

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.5 bits (148), Expect = 8e-11
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 23/129 (17%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           + D+   T LH+A   +R  + K  +   A          D   T LH A  +G + MV 
Sbjct: 37  QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL---GGDLNSTPLHWATRQGHLSMVV 93

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKG 126
           +++ +  +   ++D  G + +H A  + +     H       V  LI K       D  G
Sbjct: 94  QLMKYGAD-PSLIDGEGCSCIHLA--AQF----GHT----SIVAYLIAKGQDVDMMDQNG 142

Query: 127 NTPFHVLAA 135
            TP    AA
Sbjct: 143 MTPLM-WAA 150

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.4 bits (140), Expect = 1e-09
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCF-ISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMV 71
             D++G TPL +A Y       ++ LL      +     D+  K TALH A   G+  ++
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG---DKYHKNTALHWAVLAGNTTVI 193

Query: 72  QEIIDHCPECCEVVDDRGWNVLHFA 96
             +++      +  + +G + L  A
Sbjct: 194 SLLLEAGAN-VDAQNIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 29/132 (21%)

Query: 15  ERDRHGWTPLHYAVY---LDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVW 69
             D +    +  A      +RC   + L+E   D       D++  +T LH AA    + 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERC---RELVEAGYDVRQP---DKE-NVTLLHWAAINNRID 56

Query: 70  MVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KD 123
           +V+  I       ++  D     LH+A  +       HL      V  L+         D
Sbjct: 57  LVKYYISKGAIVDQLGGDLNSTPLHWA--TRQ----GHL----SMVVQLMKYGADPSLID 106

Query: 124 VKGNTPFHVLAA 135
            +G +  H LAA
Sbjct: 107 GEGCSCIH-LAA 117

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.8 bits (128), Expect = 4e-08
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 24/130 (18%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRG-DVWMV 71
             D  G + +H A       I   L+    D       D++  MT L  AA R   V   
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM---DQN-GMTPLMWAAYRTHSVDPT 159

Query: 72  QEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI------FKKDVK 125
           + ++                 LH+A          +       +  L+        +++K
Sbjct: 160 RLLLTFNVSVNLGDKYHKNTALHWA--VLA----GNT----TVISLLLEAGANVDAQNIK 209

Query: 126 GNTPFHVLAA 135
           G +    LA 
Sbjct: 210 GESALD-LAK 218

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
           LLL    S+      H  T LH+AV      +   LLE  A+  A    +   + +AL L
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ---NIKGE-SALDL 216

Query: 62  AAGRGDVWMVQEIIDH 77
           A  R +VWM+  + + 
Sbjct: 217 AKQRKNVWMINHLQEA 232

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 31/145 (21%), Positives = 43/145 (29%), Gaps = 20/145 (13%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            R ++G TP   A       + K  L   AD +     D     TA   AA  G V  ++
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC---DFY-GFTAFMEAAVYGKVKALK 122

Query: 73  EIIDH---------CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD 123
            +              E  E +   G   L  A    +   LK L+D+  A  N     D
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN---ACD 179

Query: 124 VKGNTPFHVLAAVCRQSYDARYDIV 148
             G        A+          I 
Sbjct: 180 NMGRNALIH--ALLSSDDSDVEAIT 202

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 20/143 (13%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
            LL+   ++  + +  GWTPLH AV + R  I + LL   AD        ++   T   L
Sbjct: 23  QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR---KKNGA-TPFLL 78

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLV---------DKY 112
           AA  G V +++  +    +     D  G+     A V    + LK L           K 
Sbjct: 79  AAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137

Query: 113 PAVRNLIFKKDVKGNTPFHVLAA 135
              +    +    G T     AA
Sbjct: 138 KEDQE---RLRKGGATALM-DAA 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.6 bits (135), Expect = 7e-09
 Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 16/136 (11%)

Query: 7   DKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE---ADKSAALISDEDRKMTALHLAA 63
            K K       + G T L  A       + K LL+   AD +A    D   +  AL  A 
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC---DNMGR-NALIHAL 190

Query: 64  GRGDVWMVQEI----IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI 119
              D   V+ I    +DH  +   V  +RG   L  A+   +   ++ L+++     N  
Sbjct: 191 LSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-- 247

Query: 120 FKKDVKGNTPFHVLAA 135
              D  G T    LA 
Sbjct: 248 -DTDSDGKTALL-LAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 11/118 (9%)

Query: 20  GWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77
               L  AV  +   + + LLE  A+ +     +E+   T LH A       +V+ ++ H
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ---EEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 78  CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAA 135
             +   +    G      A ++   + LK  + K   V N   + D  G T F   AA
Sbjct: 62  GAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-N---ECDFYGFTAFM-EAA 113

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE---ADKSAALISDEDRKMTALHLAAGRGDVWMV 71
            R   G TPL  AV      + + LLE    + +     D D K TAL LA       + 
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT---DSDGK-TALLLAVELKLKKIA 269

Query: 72  QEIIDH 77
           + +   
Sbjct: 270 ELLCKR 275

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 23/135 (17%)

Query: 9   KKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRG 66
             +   E+      PLH A         +  L+     +     D+    TAL+ A   G
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL---DKAGS-TALYWACHGG 117

Query: 67  DVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD------LKHLVDKYPAVRNLIF 120
              +V+ +           +  G   LH A  ++          L               
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAA--AWKGYADIVQLLLAKGAR--------TD 167

Query: 121 KKDVKGNTPFHVLAA 135
            ++++    F  +A 
Sbjct: 168 LRNIEKKLAFD-MAT 181

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 23/140 (16%)

Query: 1   VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALH 60
            P  L  ++  +         T         R  +      A++       E      LH
Sbjct: 27  TPDELYIEEGDII-YITDMSDTNWWKGTSKGRTGLIPSNYVAEQ------AESID-NPLH 78

Query: 61  LAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD-----LKHLVDKYPAV 115
            AA RG++  ++E +D+       +D  G   L++A             ++ L  +    
Sbjct: 79  EAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWA-----CHGGHKDIVEMLFTQPNIE 132

Query: 116 RNLIFKKDVKGNTPFHVLAA 135
            N   +++  G+T  H  AA
Sbjct: 133 LN---QQNKLGDTALH-AAA 148

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQE 73
             D+ G T L++A +     I + L    +    ++ +++   TALH AA +G   +VQ 
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEMLF--TQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158

Query: 74  IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
           ++       ++ +         A  +  A  LK       AVR L    + +       
Sbjct: 159 LLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTL---SNAEDYLDDED 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 13/121 (10%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
           +  + G   +  A+Y         L    +   +I   D   T       +G   ++   
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYI--EEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLA 134
                       +   N LH A        L+  +D    V N     D  G+T  +  A
Sbjct: 65  YVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-N---GLDKAGSTALY-WA 113

Query: 135 A 135
            
Sbjct: 114 C 114

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
           +L  +      ++++ G T LH A +     I + LL   A        + ++K  A  +
Sbjct: 124 MLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR---NIEKK-LAFDM 179

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96
           A       ++++          + +   +     +
Sbjct: 180 ATNAACASLLKKKQGTDAV-RTLSNAEDYLDDEDS 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 23/137 (16%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
           +L+  + +    R   G TPL  A  L    + + L+   AD +A    D+  K +ALH 
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV---DDLGK-SALHW 131

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK 121
           AA   +V     ++ +     ++ ++R    L  A     AR+       Y   + L+  
Sbjct: 132 AAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLA-----ARE-----GSYETAKVLLDH 180

Query: 122 ------KDVKGNTPFHV 132
                  D     P  +
Sbjct: 181 FANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 35/140 (25%), Positives = 48/140 (34%), Gaps = 23/140 (16%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
             + +  SL  + DR G T LH A    R   +K LLE  AD +     D   + T LH 
Sbjct: 9   DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGR-TPLHA 64

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK 121
           A       + Q +I +     +     G   L  A     AR           + +LI  
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILA-----ARL-AVEG----MLEDLINS 114

Query: 122 ------KDVKGNTPFHVLAA 135
                  D  G +  H  AA
Sbjct: 115 HADVNAVDDLGKSALH-WAA 133

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            ++    TPL  A        +K LL+  A++      D   +     +A  R    +V+
Sbjct: 153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDIT---DHMDR-LPRDIAQERMHHDIVR 208

Query: 73  EIIDH 77
            + ++
Sbjct: 209 LLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D  G + LH+A  ++    +  LL+  A+K      +   + T L LAA  G     +
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ---NNREE-TPLFLAAREGSYETAK 175

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            ++DH     ++ D         A
Sbjct: 176 VLLDHFAN-RDITDHMDRLPRDIA 198

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 30/148 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRK---------MTALHLAA 63
           +    G + LH A+        K L+E  AD          +K            L LAA
Sbjct: 85  DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144

Query: 64  GRGDVWMVQEIIDHCPECCEV--VDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK 121
                 +V  ++++  +   +   D  G  VLH  ++   A +          + + + +
Sbjct: 145 CTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM--IADNSPENSALVIHMYDGLLQ 202

Query: 122 --------------KDVKGNTPFHVLAA 135
                          + +G TP   LAA
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLK-LAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 28/157 (17%)

Query: 5   LLDKKKSLT---RERDRHGWTPLHYAVYLDRCF---ISKCLLEADKSA--------ALIS 50
           L    K LT         G T L  AV   +         LL+ DK +        A  +
Sbjct: 25  LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84

Query: 51  DEDRK-MTALHLAAGRGDVWMVQEIIDH------------CPECCEVVDDRGWNVLHFAM 97
           DE  +  +ALH+A  +  +  V+ ++++              +        G   L  A 
Sbjct: 85  DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144

Query: 98  VSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLA 134
            +     + +L++  P     +   D  GNT  H L 
Sbjct: 145 CTKQWDVVTYLLEN-PHQPASLEATDSLGNTVLHALV 180

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 22/95 (23%)

Query: 4   LLLDKKKSLT--RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHL 61
            LL+           D  G T LH  V                   +I+D   + +AL +
Sbjct: 154 YLLENPHQPASLEATDSLGNTVLHALV-------------------MIADNSPENSALVI 194

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96
               G + M   +        E+ + +G   L  A
Sbjct: 195 HMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQE 73
             +    + L   +Y     +   L        L    + + +T L LAA  G + + + 
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPTV---QLEEISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 74  IIDH 77
           I+  
Sbjct: 240 ILQR 243

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 24/129 (18%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
                G TPLH A       +   LL   A+ +     ++    T LHL A  G V +  
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG---NKSGL-TPLHLVAQEGHVPVAD 295

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKG 126
            +I H     +     G+  LH A  S Y     ++      V+ L+        K   G
Sbjct: 296 VLIKHGVM-VDATTRMGYTPLHVA--SHY----GNI----KLVKFLLQHQADVNAKTKLG 344

Query: 127 NTPFHVLAA 135
            +P H  AA
Sbjct: 345 YSPLH-QAA 352

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.4 bits (145), Expect = 5e-10
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 25/140 (17%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
            LL+K+ S      + G+TPLH A    +  +++ LLE  A  +AA    ++  +T LH+
Sbjct: 131 ALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA---GKN-GLTPLHV 185

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK 121
           A    ++ +V+ ++             G+  LH A  +          ++    R+L+  
Sbjct: 186 AVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIA--AKQ--------NQVEVARSLLQY 234

Query: 122 ------KDVKGNTPFHVLAA 135
                 + V+G TP H LAA
Sbjct: 235 GGSANAESVQGVTPLH-LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 12/123 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             ++ G TPLH         ++  L++      A          T LH+A+  G++ +V+
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT---TRMGY-TPLHVASHYGNIKLVK 328

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
            ++ H  +        G++ LH A    +   +  L+           +    G TP   
Sbjct: 329 FLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA----SPNEVSSDGTTPLA- 382

Query: 133 LAA 135
           +A 
Sbjct: 383 IAK 385

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
                G TPLH A           LLE  A ++      +    T LH+AA  G V + +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQACM---TKKGF-TPLHVAAKYGKVRVAE 163

Query: 73  EIIDH--CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPF 130
            +++    P         G   LH A+       +K L+ +  +  +        G TP 
Sbjct: 164 LLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-H---SPAWNGYTPL 216

Query: 131 HVLAA 135
           H +AA
Sbjct: 217 H-IAA 220

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 24/129 (18%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
                G TPLH A ++    I K LL+  A  + +   +   + T LH+AA  G   + +
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVE-TPLHMAARAGHTEVAK 64

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKG 126
            ++ +  +            LH A     AR + H       V+ L+            G
Sbjct: 65  YLLQNKAK-VNAKAKDDQTPLHCA-----AR-IGHT----NMVKLLLENNANPNLATTAG 113

Query: 127 NTPFHVLAA 135
           +TP H +AA
Sbjct: 114 HTPLH-IAA 121

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            + + G++PLH A       I   LL+  A  +       D   T L +A   G + +  
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV---SSDGT-TPLAIAKRLGYISVTD 394

Query: 73  ---EIIDHCPECCEVVDDRGWNVLHFA 96
               + D       V D    +     
Sbjct: 395 VLKVVTDETSF-VLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLA 62
           LLL    S   E    G TPL  A  L    ++  L       + +   D+ +M+     
Sbjct: 362 LLLKNGASPN-EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE-- 418

Query: 63  AGRGDVWMVQEIIDH 77
                   V EI+D 
Sbjct: 419 -------TVDEILDV 426

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 57.4 bits (140), Expect = 4e-10
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 24/140 (17%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
           L LD  ++   + D HG++PLH+A    R  + + L+   A  +     +     T LHL
Sbjct: 23  LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM---NRGDD-TPLHL 78

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD------LKHLVDKYPAV 115
           AA  G   +VQ+++ +  +    V++ G   LH+A   F+ +D      + +        
Sbjct: 79  AASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYA--CFWGQDQVAEDLVANGAL----- 130

Query: 116 RNLIFKKDVKGNTPFHVLAA 135
              +   +  G  P    A 
Sbjct: 131 ---VSICNKYGEMPVD-KAK 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 21/126 (16%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQEII 75
                  +            +  L  D +   ++  D    + LH A   G   +V+ +I
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWL--DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 76  DHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTP 129
                   V++      LH A  + +     H       V+ L+         +  GN P
Sbjct: 60  MRGAR-INVMNRGDDTPLHLA--ASH----GHR----DIVQKLLQYKADINAVNEHGNVP 108

Query: 130 FHVLAA 135
            H  A 
Sbjct: 109 LH-YAC 113

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.2 bits (116), Expect = 7e-07
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             + HG  PLHYA +  +  +++ L+   A  S     ++  +   +  A       + +
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKYGE-MPVDKAKAPLRELLRE 155

Query: 73  EIIDH 77
                
Sbjct: 156 RAEKM 160

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.8 bits (146), Expect = 4e-10
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 26/136 (19%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D   +TPLH A   +R  +   LL   AD +     +   K +A+ +A        + 
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV---NCHGK-SAVDMAPTPELRERLT 174

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
                             + L  A        +K  +          FK+     T  H 
Sbjct: 175 YEFKG-------------HSLLQAAREADLAKVKKTLALEIIN----FKQPQSHETALH- 216

Query: 133 LAAVCRQSYDARYDIV 148
            A      +  R  + 
Sbjct: 217 CAV--ASLHPKRKQVA 230

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 24/129 (18%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D    TPLH A   +R  I + LL+  AD  A    D+   +  LH A   G   + +
Sbjct: 53  ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK---DKG-GLVPLHNACSYGHYEVTE 108

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARD------LKHLVDKYPAVRNLIFKKDVKG 126
            ++ H       +D   +  LH A  +   R       L H  D            +  G
Sbjct: 109 LLLKHGAC-VNAMDLWQFTPLHEA--ASKNRVEVCSLLLSHGAD--------PTLVNCHG 157

Query: 127 NTPFHVLAA 135
            +   + A 
Sbjct: 158 KSAVDM-AP 165

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.3 bits (137), Expect = 5e-09
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           E+++   TPLH A       + + L +  A  +A    D   + TALH AA  G +   +
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL---DSLGQ-TALHRAALAGHLQTCR 297

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            ++ +  +   ++  +G+      
Sbjct: 298 LLLSYGSD-PSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.6 bits (135), Expect = 9e-09
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 26/128 (20%)

Query: 16  RDRHGWTPLHYAV---YLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWM 70
           + +   T LH AV   +  R  +++ LL   A+ +     ++D   T LH+AA R    +
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK---NKDFM-TPLHVAAERAHNDV 262

Query: 71  VQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDV 124
           ++ +  H  +    +D  G   LH A     A    HL       R L+          +
Sbjct: 263 MEVLHKHGAKM-NALDSLGQTALHRA-----ALA-GHL----QTCRLLLSYGSDPSIISL 311

Query: 125 KGNTPFHV 132
           +G T   +
Sbjct: 312 QGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 35/144 (24%), Positives = 45/144 (31%), Gaps = 26/144 (18%)

Query: 1   VPLLLLDKKKSLTRERDRHGWTPLHY-AVYLDRCFISKCLLE--ADKSAALISDEDRKMT 57
             L L D           +    L   A   +   +   L     +  A   SD   K T
Sbjct: 6   SALDLADPSAKAV-LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA---SDGR-KST 60

Query: 58  ALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRN 117
            LHLAAG   V +VQ ++ H  +     D  G   LH A    Y     H          
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNA--CSY----GHY----EVTEL 109

Query: 118 LIFK------KDVKGNTPFHVLAA 135
           L+         D+   TP H  AA
Sbjct: 110 LLKHGACVNAMDLWQFTPLH-EAA 132

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 6/51 (11%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAA 63
             D  G T LH A         + LL   +D S           TA  +  
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII---SLQGF-TAAQMGN 321

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 57.0 bits (139), Expect = 5e-10
 Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 24/140 (17%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
             L K  +L  + D  G+TPL +A         + LLE  AD        ++R  +AL L
Sbjct: 20  EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL---AKER-ESALSL 75

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK 121
           A+  G   +V  +++   +   + D  G   L +A      R   H+      V  L+ +
Sbjct: 76  ASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYA-----VRG-NHV----KCVEALLAR 124

Query: 122 ------KDVKGNTPFHVLAA 135
                 +   G TP   LA 
Sbjct: 125 GADLTTEADSGYTPMD-LAV 143

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D +G TPL YAV  +     + LL   AD +      +    T + LA   G   + Q
Sbjct: 97  IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE---ADSG-YTPMDLAVALGYRKVQQ 152

Query: 73  EIIDH 77
            I +H
Sbjct: 153 VIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 21/123 (17%)

Query: 20  GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQEIIDHC 78
               +H           K  L       L++  D +  T L  A+  G++  V+ +++  
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKG--DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 79  PECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPFHV 132
            +   ++     + L  A  S       +       V  L+ +       D  G TP   
Sbjct: 60  AD-PHILAKERESALSLA--STG----GYT----DIVGLLLERDVDINIYDWNGGTPLL- 107

Query: 133 LAA 135
            A 
Sbjct: 108 YAV 110

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D +G T L +   L      + L E  AD       D    +TALH+AAG     +V+
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR---DMRGGLTALHMAAGYVRPEVVE 128

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            +++   +  EV D+RG   L  A
Sbjct: 129 ALVELGAD-IEVEDERGLTALELA 151

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 29/126 (23%), Positives = 39/126 (30%), Gaps = 22/126 (17%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLE-ADKSAALISDEDRKMTALHLAAGRGDVWMVQEII 75
                TP   A           LLE  D  A    DE+ + TAL   AG G    V+ + 
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLEDRDVDAV---DENGR-TALLFVAGLGSDKCVRLLA 97

Query: 76  DHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTP 129
           +   +        G   LH A  + Y             V  L+        +D +G T 
Sbjct: 98  EAGADLDHRDMRGGLTALHMA--AGY----VRP----EVVEALVELGADIEVEDERGLTA 147

Query: 130 FHVLAA 135
              LA 
Sbjct: 148 LE-LAR 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 7/77 (9%)

Query: 20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP 79
          G                         AA +  E    T    AA + D   + ++++   
Sbjct: 15 GAMEYLIEWKDGHSPSWVPSSYI---AADVVSEYE--TPWWTAARKADEQALSQLLEDR- 68

Query: 80 ECCEVVDDRGWNVLHFA 96
             + VD+ G   L F 
Sbjct: 69 -DVDAVDENGRTALLFV 84

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 19/135 (14%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRK-MTALHLAAGRGDVWMV 71
           +R   G T LH A   D    +  L+E   +     ++ E  +  TALH+A    +V +V
Sbjct: 32  QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91

Query: 72  QEIIDH------------CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI 119
           + ++                     +   G + L FA        ++ L++    +R   
Sbjct: 92  RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--- 148

Query: 120 FKKDVKGNTPFHVLA 134
             +D  GNT  H+L 
Sbjct: 149 -AQDSLGNTVLHILI 162

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLL-------EADKSAALISDEDRKM----TALHLAA 63
                G T LH AV      + + LL            +         +      L  AA
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA------MVSFYARDLKHLVDKYPAVRN 117
             G   +V+ +I+H  +     D  G  VLH          +    +L    D    +++
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQ-DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188

Query: 118 LIFKKDVKGNTPFHVLAA 135
           L    + +G TPF  LA 
Sbjct: 189 LELVPNNQGLTPFK-LAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 14  RERDRHGWTPLHYAVYLDR----CFISKCLLEAD-----KSAALISDEDRKMTALHLAAG 64
           R +D  G T LH  +        C +   LL  D     KS  L+ +     T   LA  
Sbjct: 148 RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGV 206

Query: 65  RGDVWMVQEIIDH 77
            G++ M Q ++  
Sbjct: 207 EGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 7   DKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAG 64
                       +G  PL +A  +    I + L+E  AD  A    D     T LH+   
Sbjct: 108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ---DSLGN-TVLHILIL 163

Query: 65  RGDVWMVQEII---------DHCPECCEVVDDRGWNVLHFA 96
           + +     ++          DH      V +++G      A
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 21/132 (15%)

Query: 20  GWTPLHYAVYL-DRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
             +PL  A    D   +SK L     +           + TALH+AA   ++     +++
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQR---GAMGE-TALHIAALYDNLEAAMVLME 58

Query: 77  H----CPECCEVVDDRGWNVLHFAMVSFYARDLKHLV---------DKYPAVRNLIFKKD 123
                  E        G   LH A+++     ++ L+                       
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 124 VKGNTPFHVLAA 135
             G  P    AA
Sbjct: 119 YYGEHPLS-FAA 129

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.5 bits (141), Expect = 9e-10
 Identities = 24/170 (14%), Positives = 41/170 (24%), Gaps = 20/170 (11%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE-ADKSAALISDEDRK-MTALHLAAGRGDVWMVQ 72
             D  G + L  AV     + S       D     +  ED    T LH       +    
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 73  EIIDHCPEC-----------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK 121
               +  +                                   +   +D    + N++  
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 122 KDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAK-AHFQATNKQNISAEHI 170
           +D  G+T  + +AA           IV   +   A     NK  +     
Sbjct: 279 QDSNGDTCLN-IAARLG-----NISIVDALLDYGADPFIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.2 bits (135), Expect = 5e-09
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRG---DVWMV 71
           D HG TPLH+   +    + K L++  +++      D   + + L  A       D    
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG---DNMGE-SCLVKAVKSVNNYDSGTF 183

Query: 72  QEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKY 112
           + ++D+   C  + D     +LH   +            KY
Sbjct: 184 EALLDYLYPCLILEDSMNRTILHHI-IITSGMTGCSAAAKY 223

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 23/145 (15%), Positives = 38/145 (26%), Gaps = 18/145 (12%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYL----DRCFISKCLLE------ADKSAALISDED 53
            LLD         D    T LH+ +           +K  L+        K    I    
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244

Query: 54  RKMTALHLAAGRGDVWMVQEIIDHCPECCEVV---DDRGWNVLHFAMVSFYARDLKHLVD 110
            +  +            + E +D       ++   D  G   L+ A        +  L+D
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304

Query: 111 KYPAVRNLIFKKDVKGNTPFHVLAA 135
              A   +    +  G  P     A
Sbjct: 305 YG-ADPFI---ANKSGLRPVD-FGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.2 bits (109), Expect = 7e-06
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAG 64
            +D +G T L+ A  L    I   LL+  AD     I+++      +   AG
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPF---IANKSGL-RPVDFGAG 325

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 56.3 bits (137), Expect = 9e-10
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D +G T L +   L      + L E  AD       D    +TALH+AAG     +V+
Sbjct: 71  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR---DMRGGLTALHMAAGYVRPEVVE 127

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            +++   +  EV D+RG   L  A
Sbjct: 128 ALVELGAD-IEVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 29/126 (23%), Positives = 39/126 (30%), Gaps = 22/126 (17%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLE-ADKSAALISDEDRKMTALHLAAGRGDVWMVQEII 75
                TP   A           LLE  D  A    DE+ + TAL   AG G    V+ + 
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDRDVDAV---DENGR-TALLFVAGLGSDKCVRLLA 96

Query: 76  DHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTP 129
           +   +        G   LH A  + Y             V  L+        +D +G T 
Sbjct: 97  EAGADLDHRDMRGGLTALHMA--AGY----VRP----EVVEALVELGADIEVEDERGLTA 146

Query: 130 FHVLAA 135
              LA 
Sbjct: 147 LE-LAR 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 15  ERD-RHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMV 71
            RD R G T LH A    R  + + L+E  AD       DE    TAL LA         
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---DERGL-TALELAREILKTTPK 159

Query: 72  QEIIDH 77
              +  
Sbjct: 160 GNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 7/77 (9%)

Query: 20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP 79
          G                         AA +  E    T    AA + D   + ++++   
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYI---AADVVSEYE--TPWWTAARKADEQALSQLLEDR- 67

Query: 80 ECCEVVDDRGWNVLHFA 96
             + VD+ G   L F 
Sbjct: 68 -DVDAVDENGRTALLFV 83

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 20/129 (15%), Positives = 35/129 (27%), Gaps = 23/129 (17%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           + D  G T L+YAV        K  ++            +    T+ + A    DV +V 
Sbjct: 90  QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY---GKTGWKTSFYHAVMLNDVSIVS 146

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKG 126
             +   P           + +H            H+      +  L+         +   
Sbjct: 147 YFLSEIPS--TFDLAILLSCIHIT--IKN----GHV----DMMILLLDYMTSTNTNNSLL 194

Query: 127 NTPFHVLAA 135
             P   LA 
Sbjct: 195 FIPDIKLAI 203

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
           + D HG +  +YA+  +   +   LL A    AL +  +     LH AA   D  +V+ +
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAG---ALKNLLE-NEFPLHQAATLEDTKIVKIL 81

Query: 75  IDHCPECCEVVDDRGWNVLHFA 96
           +    +     DD+G   L++A
Sbjct: 82  LFSGLD-DSQFDDKGNTALYYA 102

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
                  + +H  +      +   LL+     +     +    +  + LA    D+ M+Q
Sbjct: 156 FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN---NSLLFIPDIKLAIDNKDIEMLQ 212

Query: 73  EIIDH 77
            +  +
Sbjct: 213 ALFKY 217

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.8 bits (136), Expect = 1e-09
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 26/130 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D  GWTPLH A +     I + LL+  AD +A    D     T L LAA  G + +V+
Sbjct: 42  AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV---DHAGM-TPLRLAALFGHLEIVE 97

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHL-VDKYPAVRNLIFK------KDVK 125
            ++ +  +     D  G   LH A  + +     HL + +      L+        +D  
Sbjct: 98  VLLKNGAD-VNANDMEGHTPLHLA--AMF----GHLEIVEV-----LLKNGADVNAQDKF 145

Query: 126 GNTPFHVLAA 135
           G T F  ++ 
Sbjct: 146 GKTAFD-ISI 154

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.4 bits (122), Expect = 8e-08
 Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 24/124 (19%)

Query: 20  GWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77
               L  A    R    + L+   AD +A    D     T LHLAA  G + +V+ ++ +
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAE---DASGW-TPLHLAAFNGHLEIVEVLLKN 69

Query: 78  CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPFH 131
             +    VD  G   L  A  + +     HL      V  L+         D++G+TP H
Sbjct: 70  GAD-VNAVDHAGMTPLRLA--ALF----GHL----EIVEVLLKNGADVNANDMEGHTPLH 118

Query: 132 VLAA 135
            LAA
Sbjct: 119 -LAA 121

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D  G TPLH A       I + LL+  AD +A    D+  K TA  ++   G+  + +
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ---DKFGK-TAFDISIDNGNEDLAE 163

Query: 73  EIIDH 77
            +   
Sbjct: 164 ILQKL 168

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 24/128 (18%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
                  TPL  A           LL+  A         E    + +H AA RG V  V 
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-----ESDLASPIHEAARRGHVECVN 174

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK-----KDVKGN 127
            +I +     +         L+ A         +        V+ L+       +    +
Sbjct: 175 SLIAYGGN-IDHKISHLGTPLYLA--CEN----QQR----ACVKKLLESGADVNQGKGQD 223

Query: 128 TPFHVLAA 135
           +P H    
Sbjct: 224 SPLH-AVV 230

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            +  H  TPL+ A    +    K LLE  AD +         + + LH         +  
Sbjct: 185 HKISHLGTPLYLACENQQRACVKKLLESGADVNQG-----KGQDSPLHAVVRTASEELAC 239

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            ++D   +  +  +  G   +   
Sbjct: 240 LLMDFGAD-TQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 15/121 (12%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
           +    G  P                L    S  L+ D     + +H AA  G    ++ +
Sbjct: 28  QGGMDGSKPAGPRD------FPGIRLL---SNPLMGDAVSDWSPMHEAAIHGHQLSLRNL 78

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLA 134
           I        ++     + LH A +  +   +K L+     V N         +TP    A
Sbjct: 79  ISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-N---GVTADWHTPLF-NA 132

Query: 135 A 135
            
Sbjct: 133 C 133

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 27/130 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           + +    +P+H A           L+    +             T L+LA        V+
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK---ISHLG-TPLYLACENQQRACVK 207

Query: 73  EIIDHCPECCEV-VDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVK 125
           ++++      +V       + LH        R              L+        K+ +
Sbjct: 208 KLLESG---ADVNQGKGQDSPLHAV-----VRT-ASE----ELACLLMDFGADTQAKNAE 254

Query: 126 GNTPFHVLAA 135
           G  P   L  
Sbjct: 255 GKRPVE-LVP 263

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDV 68
            + +   +PLH  V      ++  L++  AD  A    + + K   + L      +
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK---NAEGK-RPVELVPPESPL 268

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
            LL   +     +D  GWTP+ +A       + K LL   +D +     D +     LH 
Sbjct: 95  YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR---DNEEN-ICLHW 150

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHL-VDKYPAVRNLIF 120
           AA  G V + + ++    +    V+  G + LH A  +                    + 
Sbjct: 151 AAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIA--ARE----NRYDCVVL-----FLS 198

Query: 121 K------KDVKGNTPFHV 132
           +      K+ +G TP   
Sbjct: 199 RDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 11/123 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
              ++  +PLH A       I   L++  A+        ED + T L  AA    +  V+
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC---SED-QRTPLMEAAENNHLEAVK 61

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
            +I       +  D  G   LH A    +   +++L+       N    +D  G TP   
Sbjct: 62  YLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN---CQDDGGWTPMI- 116

Query: 133 LAA 135
            A 
Sbjct: 117 WAT 119

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            RD      LH+A +     I++ LL    D  A    +     + LH+AA       V 
Sbjct: 139 IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV---NIHGD-SPLHIAARENRYDCVV 194

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
             +    +   + +  G   L  A
Sbjct: 195 LFLSRDSD-VTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.8 bits (128), Expect = 4e-08
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             + HG +PLH A   +R       L   +D +     +++ + T L  A+    VW   
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK---NKEGE-TPLQCASLNSQVWSAL 227

Query: 73  EIIDH 77
           ++   
Sbjct: 228 QMSKA 232

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 24/129 (18%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D  G+TPL +A    +  + + LL+  AD        + R  +AL LA  +G   +V+
Sbjct: 31  HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGR-ESALSLACSKGYTDIVK 86

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKG 126
            ++D   +     D  G   L +A          H+      V+ L+        +   G
Sbjct: 87  MLLDCGVD-VNEYDWNGGTPLLYA--VHG----NHV----KCVKMLLESGADPTIETDSG 135

Query: 127 NTPFHVLAA 135
                 LA 
Sbjct: 136 YNSMD-LAV 143

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           E D +G TPL YAV+ +     K LLE  AD +      +     ++ LA   G   + Q
Sbjct: 97  EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE---TDSGY-NSMDLAVALGYRSVQQ 152

Query: 73  EIIDH 77
            I  H
Sbjct: 153 VIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.9 bits (118), Expect = 3e-07
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 24/125 (19%)

Query: 19  HGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
                +H              +E     +     DE+   T L  AA  G + +V+ ++ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHT---DEEGF-TPLMWAAAHGQIAVVEFLLQ 57

Query: 77  HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPF 130
           +  +  +++     + L  A          +       V+ L+         D  G TP 
Sbjct: 58  NGAD-PQLLGKGRESALSLA--CSK----GYT----DIVKMLLDCGVDVNEYDWNGGTPL 106

Query: 131 HVLAA 135
              A 
Sbjct: 107 L-YAV 110

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 11/123 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             +  G TPLH AV      + + L +  AD +     +     T LHLA       +++
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP---EPTCGRTPLHLAVEAQAASVLE 209

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
            ++    +        G   L  A++       + L   + A      +      +P   
Sbjct: 210 LLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRA-HGAPEP---EDGGDKLSPCS- 263

Query: 133 LAA 135
            + 
Sbjct: 264 SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 17 DRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
             G T LH AV          LL   A      + ++  + TALHLAA  G+   V+++
Sbjct: 6  TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVEKL 64

Query: 75 IDHCPECCEVVDDRGWNVLHFA 96
                   V +  G   LH A
Sbjct: 65 YAAGAG-VLVAERGGHTALHLA 85

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 22/135 (16%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            ++  G T LH A  L      + L    A    A   +     TALHLA          
Sbjct: 40  LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA---ERGGH-TALHLACRVRAHTCAC 95

Query: 73  EIIDH------------CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIF 120
            ++                +  +   D                + +   + +        
Sbjct: 96  VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE--- 152

Query: 121 KKDVKGNTPFHVLAA 135
            ++  G+TP H +A 
Sbjct: 153 AENYDGHTPLH-VAV 166

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
           LL D    L +     G TPLH AV      + + LL+  AD +A        + T L  
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR---MYGGR-TPLGS 231

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96
           A  R +  + + +  H             +    +
Sbjct: 232 ALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            R   G TPL  A+      +++ L    A +        D+  +    +    D     
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED---GGDKL-SPCSSSGSDSDSDNRD 275

Query: 73  E 73
           E
Sbjct: 276 E 276

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 26/173 (15%), Positives = 39/173 (22%), Gaps = 64/173 (36%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAA------------------------- 47
             +R G T LH A  +     +  LL+                                 
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132

Query: 48  -----------LIS--------DEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR 88
                                 + D   T LH+A    D  MV+ + D   +  +     
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGH-TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 89  GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPFHVLAA 135
           G   LH A                  +  L+        +   G TP    A 
Sbjct: 192 GRTPLHLA--VEA--------QAASVLELLLKAGADPTARMYGGRTPLG-SAL 233

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.2 bits (129), Expect = 4e-09
 Identities = 29/123 (23%), Positives = 40/123 (32%), Gaps = 23/123 (18%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
            + G TPLH A         K LL   AD +A     +D   T LHLAA  G   +V+ +
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR---SKDGN-TPLHLAAKNGHAEIVKLL 61

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNT 128
           +    +        G    H A          H       V+ L  K      +    + 
Sbjct: 62  LAKGAD-VNARSKDGNTPEHLA--KKN----GHH----EIVKLLDAKGADVNARSWGSSH 110

Query: 129 PFH 131
             H
Sbjct: 111 HHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.9 bits (118), Expect = 9e-08
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            R + G TPLH A       I K LL   AD +A     +D   T  HLA   G   +V+
Sbjct: 37  ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR---SKDGN-TPEHLAKKNGHHEIVK 92

Query: 73  EIIDHCPECCEVVDDRGWNVLH 94
            +     +          +  H
Sbjct: 93  LLDAKGAD-VNARSWGSSHHHH 113

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.0 bits (131), Expect = 4e-09
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 28/141 (19%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHL 61
            LL ++       +R G T L   ++     I+  LL+  A  +     D     + +H 
Sbjct: 20  RLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ---DTSGT-SPVHD 74

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA-------MVSFYARDLKHLVDKYPA 114
           AA  G +  ++ +++H  +   V D  G   +H A       +VSF    L    D    
Sbjct: 75  AARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSF----LAAESD---- 125

Query: 115 VRNLIFKKDVKGNTPFHVLAA 135
               + ++D +G TP   LA 
Sbjct: 126 ----LHRRDARGLTPLE-LAL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.2 bits (116), Expect = 4e-07
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE-ADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
             D  G  P+H AV      +   L   +D       D     T L LA  RG   +V  
Sbjct: 96  VPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRR---DARGL-TPLELALQRGAQDLVDI 151

Query: 74  IIDH 77
           +  H
Sbjct: 152 LQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 30/125 (24%), Positives = 40/125 (32%), Gaps = 26/125 (20%)

Query: 20  GWTPLHYAVYLDRCFISKCLLE---ADKSAALISDEDRKMTALHLAA-GRGDVWMVQEII 75
               L  A         + LL        A    +   K TAL +   G   +    E++
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDAL---NRFGK-TALQVMMFGSTAI--ALELL 55

Query: 76  DHCPECCEVVDDRGWNVLHFAMVSFYARD-----LKHLVDKYPAVRNLIFKKDVKGNTPF 130
                   V D  G + +H A     AR      LK LV+ + A  N     D  G  P 
Sbjct: 56  KQGAS-PNVQDTSGTSPVHDA-----ARTGFLDTLKVLVE-HGADVN---VPDGTGALPI 105

Query: 131 HVLAA 135
           H LA 
Sbjct: 106 H-LAV 109

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 21/127 (16%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
           +  G   L      +        +        +      +  L  ++  G+  +VQ II 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG---MRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 77  HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPF 130
              +   + +D G   LH A                  V+ L+         D  G TP 
Sbjct: 59  EVDD-PSLPNDEGITALHNA--VCA--------GHTEIVKFLVQFGVNVNAADSDGWTPL 107

Query: 131 HVLAAVC 137
           H  AA C
Sbjct: 108 H-CAASC 113

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 12/125 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             +  G T LH AV      I K L++   + +AA   D D   T LH AA   +V + +
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA---DSDGW-TPLHCAASCNNVQVCK 120

Query: 73  EIIDH--CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPF 130
            +++           D +        M   Y +  + L              +       
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ-EKMG---IMNKGVIYAL 176

Query: 131 HVLAA 135
                
Sbjct: 177 WDYEP 181

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 26/129 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           + +      L  +       + + ++    D S     +++   TALH A   G   +V+
Sbjct: 32  KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP---NDEGI-TALHNAVCAGHTEIVK 87

Query: 73  EIIDHCPECCEV--VDDRGWNVLHFA-------MVSFYARDLKHLVDKYPAVRNLIFKKD 123
            ++        V   D  GW  LH A       +        K LV+   AV   +   D
Sbjct: 88  FLVQF---GVNVNAADSDGWTPLHCAASCNNVQVC-------KFLVESGAAV-FAMTYSD 136

Query: 124 VKGNTPFHV 132
           ++       
Sbjct: 137 MQTAADKCE 145

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.9 bits (131), Expect = 4e-09
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 24/127 (18%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
           D  G +PLH A        ++ LL     + A     +  + T LH+AA  G   +V+ +
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR---TKVDR-TPLHMAASEGHANIVEVL 86

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARD------LKHLVDKYPAVRNLIFKKDVKGNT 128
           + H  +     D      LH+A  + +         +K+  D        +  +     T
Sbjct: 87  LKHGAD-VNAKDMLKMTALHWA--TEHNHQEVVELLIKYGAD--------VHTQSKFCKT 135

Query: 129 PFHVLAA 135
            F  ++ 
Sbjct: 136 AFD-ISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.2 bits (129), Expect = 9e-09
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            R +   TPLH A       I + LL+  AD +A    D   KMTALH A       +V+
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK---DML-KMTALHWATEHNHQEVVE 117

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            +I +  +               +
Sbjct: 118 LLIKYGAD-VHTQSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.3 bits (106), Expect = 8e-06
 Identities = 21/124 (16%), Positives = 32/124 (25%), Gaps = 25/124 (20%)

Query: 20  GWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77
               L  A    +    + L+   A  +     D     + LHLAA  G     + ++  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT----DWLGT-SPLHLAAQYGHFSTTEVLLRA 56

Query: 78  CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPFH 131
                          LH A  +               V  L+        KD+   T  H
Sbjct: 57  GVSRDAR-TKVDRTPLHMA--ASE--------GHANIVEVLLKHGADVNAKDMLKMTALH 105

Query: 132 VLAA 135
             A 
Sbjct: 106 -WAT 108

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.3 bits (106), Expect = 9e-06
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRG 66
            +D    T LH+A   +   + + L++  AD        +  K TA  ++   G
Sbjct: 95  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ---SKFCK-TAFDISIDNG 144

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 17/119 (14%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             +  G T LH A   D   + K L+E  A+ +     D +     LH AA  G + + +
Sbjct: 68  YANVDGLTALHQACIDDNVDMVKFLVENGANINQP---DNE-GWIPLHAAASCGYLDIAE 123

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFH 131
            +I         V+  G   L  A       +          ++N + ++ V       
Sbjct: 124 YLISQGAH-VGAVNSEGDTPLDIAE------EEAME----ELLQNEVNRQGVDIEAARK 171

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.5 bits (127), Expect = 6e-08
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 42/149 (28%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--------ADKSAA----------LIS---DED 53
             +  G TPL  A       + +  +         A K             L S   ++ 
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV 193

Query: 54  RK----MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD----- 104
           R      TALH+AA +G   +++ +I    +   + D  GW  LH A  + + ++     
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAA--AHWGKEEACRI 250

Query: 105 -LKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
            +++L D        +   +  G T F V
Sbjct: 251 LVENLCD--------MEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
              + G T LH A       + K L++   D +     D D   T LH AA  G     +
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK---DYDGW-TPLHAAAHWGKEEACR 249

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            ++++  +  E V+  G      A
Sbjct: 250 ILVENLCD-MEAVNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 18/123 (14%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           + D  GW PLH A       I++ L+   A   A    + +   T L +A       ++Q
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV---NSEGD-TPLDIAEEEAMEELLQ 156

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
             ++      E        ++            + L            +    G T  HV
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDAR-------QWLNSG----HINDVRHAKSGGTALHV 205

Query: 133 LAA 135
            AA
Sbjct: 206 -AA 207

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 23/131 (17%)

Query: 14  RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
           +  D           ++      +  +           +         A   GD   V  
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKR---KKTKVKFDDGAVFLAACSSGDTEEVLR 58

Query: 74  IIDHCPECCEVVDDRGWNVLHFA-------MVSFYARDLKHLVDKYPAVRNLIFKKDVKG 126
           +++   +     +  G   LH A       MV F       LV+    + N   + D +G
Sbjct: 59  LLERGAD-INYANVDGLTALHQACIDDNVDMVKF-------LVENGANI-N---QPDNEG 106

Query: 127 NTPFHVLAAVC 137
             P H  AA C
Sbjct: 107 WIPLHA-AASC 116

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 29/141 (20%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVY--LDRCFISKCLLE--ADKSAALISDEDRKMTALH 60
               K+  T+ +   G   L        +       LLE  AD + A   + D  +TALH
Sbjct: 26  PPVVKRKKTKVKFDDGAVFLAACSSGDTE---EVLRLLERGADINYA---NVD-GLTALH 78

Query: 61  LAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIF 120
            A    +V MV+ ++++        D+ GW  LH A  +        +  +Y     LI 
Sbjct: 79  QACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAA--ASCGY--LDIA-EY-----LIS 127

Query: 121 K------KDVKGNTPFHVLAA 135
           +       + +G+TP   +A 
Sbjct: 128 QGAHVGAVNSEGDTPLD-IAE 147

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            +D  GWTPLH A +  +    + L+E   D  A    ++  + TA  +A      ++ +
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV---NKVGQ-TAFDVADEDILGYLEE 282

Query: 73  EIIDH 77
                
Sbjct: 283 LQKKQ 287

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.9 bits (131), Expect = 5e-09
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 14  RERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMV 71
           R+ +    TPLH+A   +R  + + LL+  AD  A    D+      LH A   G   + 
Sbjct: 36  RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK---DKGGL-VPLHNACSYGHYEVA 91

Query: 72  QEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD------LKHLVDKYPAVRNLIFKKDVK 125
           + ++ H      V D   +  LH A  +   +       L+H  D          KK+  
Sbjct: 92  ELLVKHGAV-VNVADLWKFTPLHEA--AAKGKYEICKLLLQHGAD--------PTKKNRD 140

Query: 126 GNTPFHVLAA 135
           GNTP   L  
Sbjct: 141 GNTPLD-LVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 30/127 (23%), Positives = 42/127 (33%), Gaps = 23/127 (18%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDED-RKMTALHLAAGRGDVWMVQEII 75
           +      L  A         K L      +    D + R+ T LH AAG   V +V+ ++
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 76  DHCPECCEVVDDRGWNVLHFAMVSFYARDLKHL-VDKYPAVRNLIFK------KDVKGNT 128
            H  +     D  G   LH A    Y     H  V +      L+         D+   T
Sbjct: 63  QHGADV-HAKDKGGLVPLHNA--CSY----GHYEVAEL-----LVKHGAVVNVADLWKFT 110

Query: 129 PFHVLAA 135
           P H  AA
Sbjct: 111 PLH-EAA 116

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D   +TPLH A    +  I K LL+  AD +     + D   T L L    GD  +  
Sbjct: 103 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK---NRDGN-TPLDLVK-DGDTDIQD 157

Query: 73  EIIDH 77
            +   
Sbjct: 158 LLRGD 162

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 29/187 (15%), Positives = 49/187 (26%), Gaps = 42/187 (22%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           + +  G T LH A+      I   L+   A+ ++    D     T LH AA   D  +  
Sbjct: 49  QPNEEGITALHNAICGANYSIVDFLITAGANVNSP---DSHGW-TPLHCAASCNDTVICM 104

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSF--YARDLKHLVDK------------YPAVRNL 118
            ++ H           G             YA    +L D             Y      
Sbjct: 105 ALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164

Query: 119 ----------------IFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNK 162
                           + ++D    T +   AA        +   VP        +   +
Sbjct: 165 AEFGDELSFREGESVTVLRRDGPEETDWW-WAA-----LHGQEGYVPRNYFGLFPRVKPQ 218

Query: 163 QNISAEH 169
           ++    H
Sbjct: 219 RSKVKHH 225

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 14  RERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMV 71
           R    +    L  A       + +  ++   D S     +E+  +TALH A    +  +V
Sbjct: 15  RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP---NEEG-ITALHNAICGANYSIV 70

Query: 72  QEIIDHCPECCEV--VDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI------FKKD 123
             +I        V   D  GW  LH A  +                  L+      F   
Sbjct: 71  DFLITA---GANVNSPDSHGWTPLHCA--ASC----NDT----VICMALVQHGAAIFATT 117

Query: 124 VK-GNTPFHVLAAVCRQSY 141
           +  G T F       R+ Y
Sbjct: 118 LSDGATAFE-KCDPYREGY 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 53.2 bits (129), Expect = 6e-09
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            +D  GWTPLH A       + + LL+  A  +           + LH AA  G V +V+
Sbjct: 38  VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT---GYQN-DSPLHDAAKNGHVDIVK 93

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            ++ +       V+  G   + + 
Sbjct: 94  LLLSYGAS-RNAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.0 bits (113), Expect = 8e-07
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 23/125 (18%)

Query: 16  RDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
            +  G T LH A         + LL+  +D +     D     T LH A   G + +V+ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGW-TPLHEACNHGHLKVVEL 61

Query: 74  IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI------FKKDVKGN 127
           ++ H          +  + LH A  +       H+      V+ L+         ++ G 
Sbjct: 62  LLQHKAL-VNTTGYQNDSPLHDA--AKNG----HV----DIVKLLLSYGASRNAVNIFGL 110

Query: 128 TPFHV 132
            P   
Sbjct: 111 RPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
                  +PLH A       I K LL   A ++A    +       +          ++ 
Sbjct: 71  TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV---NIFGL-RPVDYTDDESMKSLLL 126

Query: 73  EIIDH 77
               +
Sbjct: 127 LPEKN 131

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            RD +  TPL  A  L        L+E           D +   TAL  A     + + +
Sbjct: 30  YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK---DIEGS-TALIWAVKNNRLGIAE 85

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHL-VDKYPAVRNLIFK------KDVK 125
           +++          D  G   L ++    +     +  +  +     L+        ++++
Sbjct: 86  KLLSKGSN-VNTKDFSGKTPLMWS--IIF----GYSEMSYF-----LLEHGANVNDRNLE 133

Query: 126 GNTPFHVLAA 135
           G TP   +A+
Sbjct: 134 GETPLI-VAS 142

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 26/130 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           ++D  G T L +AV  +R  I++ LL   ++ +     D   K T L  +   G   M  
Sbjct: 63  DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK---DFSGK-TPLMWSIIFGYSEMSY 118

Query: 73  EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHL-VDKYPAVRNLIFK------KDVK 125
            +++H        +  G   L  A  S Y        + K      L+        +D+ 
Sbjct: 119 FLLEHGAN-VNDRNLEGETPLIVA--SKY----GRSEIVKK-----LLELGADISARDLT 166

Query: 126 GNTPFHVLAA 135
           G T     A 
Sbjct: 167 GLTAEA-SAR 175

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           +R+  G TPL  A    R  I K LLE  AD SA    D     TA   A   G   +++
Sbjct: 129 DRNLEGETPLIVASKYGRSEIVKKLLELGADISAR---DLTGL-TAEASARIFGRQEVIK 184

Query: 73  EIIDH 77
              + 
Sbjct: 185 IFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 26/127 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
             D++G                   L+  ++     D   + T L +A   G    + ++
Sbjct: 3   HMDKNGEIVEKIKDE----KSINQNLDFLRNYR---DSYNR-TPLMVACMLGMENAIDKL 54

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNT 128
           +++  +  E  D  G   L +A           L         L+ K      KD  G T
Sbjct: 55  VENFDK-LEDKDIEGSTALIWA--VKN----NRLG----IAEKLLSKGSNVNTKDFSGKT 103

Query: 129 PFHVLAA 135
           P    + 
Sbjct: 104 PLM-WSI 109

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 15  ERDRHGWTPLHYAVY--LDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWM 70
             +R G  P+   +        +++ LL   A+ + A   D       +H AA  G +  
Sbjct: 40  ALNRFGRRPIQVMMMGSAQ---VAELLLLHGAEPNCA---DPATLTRPVHDAAREGFLDT 93

Query: 71  VQEIIDHCPECCEVVDDRGWNVLHFA 96
           +  +        +V D  G   +  A
Sbjct: 94  LVVLHRAGAR-LDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 26/130 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
                    L  A    +    + LLE  AD +A    +       + +    G   + +
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL---NRF-GRRPIQVMM-MGSAQVAE 61

Query: 73  EIIDHCPECCEVVDDRGWNV-LHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVK 125
            ++ H  E     D       +H A     AR+   L      +  L          D  
Sbjct: 62  LLLLHGAE-PNCADPATLTRPVHDA-----ARE-GFL----DTLVVLHRAGARLDVCDAW 110

Query: 126 GNTPFHVLAA 135
           G  P   LA 
Sbjct: 111 GRLPVD-LAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 7/66 (10%)

Query: 15  ERDRHGWT-PLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMV 71
             D    T P+H A           L    A        D       + LA  +G   + 
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC---DAW-GRLPVDLAEEQGHRDIA 127

Query: 72  QEIIDH 77
           + +   
Sbjct: 128 RYLHAA 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            +D +G TPL+ A       I + LL+  AD +A    D     T LHLAA  G + + +
Sbjct: 42  AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV---DAIGF-TPLHLAAFIGHLEIAE 97

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            ++ H  +     D  G      +
Sbjct: 98  VLLKHGAD-VNAQDKFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
             D  G+TPLH A ++    I++ LL+  AD +A    D+  K TA  ++ G G+  + +
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ---DKFGK-TAFDISIGNGNEDLAE 130

Query: 73  EIIDH 77
            +   
Sbjct: 131 ILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 24/124 (19%)

Query: 20  GWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77
               L  A    +    + L+   AD +A    DE    T L+LA   G + +V+ ++ +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAK---DEYGL-TPLYLATAHGHLEIVEVLLKN 69

Query: 78  CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPFH 131
             +    VD  G+  LH A  +F      HL         L+        +D  G T F 
Sbjct: 70  GAD-VNAVDAIGFTPLHLA--AFI----GHLE----IAEVLLKHGADVNAQDKFGKTAFD 118

Query: 132 VLAA 135
            ++ 
Sbjct: 119 -ISI 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.0 bits (121), Expect = 6e-08
 Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 26/126 (20%)

Query: 19  HGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
           +G TPLH A       + K LLE  AD +A    D++ + T LHLAA  G + +V+ +++
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK---DKNGR-TPLHLAARNGHLEVVKLLLE 56

Query: 77  HCPECCEVVDDRGWNVLHFAMVSFYARDLKHL-VDKYPAVRNLIFK------KDVKGNTP 129
              +     D  G   LH A  +       HL V K      L+        KD  G TP
Sbjct: 57  AGAD-VNAKDKNGRTPLHLA--ARN----GHLEVVKL-----LLEAGADVNAKDKNGRTP 104

Query: 130 FHVLAA 135
            H LAA
Sbjct: 105 LH-LAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            +D++G TPLH A       + K LLE  AD +A    D++ + T LHLAA  G + +V+
Sbjct: 30  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK---DKNGR-TPLHLAARNGHLEVVK 85

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            +++   +     D  G   LH A
Sbjct: 86  LLLEAGAD-VNAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.0 bits (113), Expect = 6e-07
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            +D++G TPLH A       + K LLE  AD +A    D++ + T LHLAA  G + +V+
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK---DKNGR-TPLHLAARNGHLEVVK 118

Query: 73  EIIDH 77
            +++ 
Sbjct: 119 LLLEA 123

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 22/126 (17%)

Query: 15  ERDRHGWTPLHYAVY--LDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWM 70
             + +G  P+   +        +++ LL   A+ + A   D       +H AA  G +  
Sbjct: 40  APNSYGRRPIQVMMMGSAR---VAELLLLHGAEPNCA---DPATLTRPVHDAAREGFLDT 93

Query: 71  VQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKK-DVKGNTP 129
           +  +        +V D  G   +  A          H        R L       +G+  
Sbjct: 94  LVVLHRAGAR-LDVRDAWGRLPVDLA-----EEL-GHR----DVARYLRAAAGGTRGSNH 142

Query: 130 FHVLAA 135
             + AA
Sbjct: 143 ARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 28/129 (21%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
                  L  A    R    + LLE  A+ +A    +       + +    G   + + +
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAP---NSY-GRRPIQVMM-MGSARVAELL 63

Query: 75  IDH--CPECCEVVDDRGWNV-LHFAMVSFYARD-----LKHLVDKYPAVRNLIFKKDVKG 126
           + H   P C    D       +H A     AR+     L  L     A  +    +D  G
Sbjct: 64  LLHGAEPNCA---DPATLTRPVHDA-----AREGFLDTLVVLHRA-GARLD---VRDAWG 111

Query: 127 NTPFHVLAA 135
             P   LA 
Sbjct: 112 RLPVD-LAE 119

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 11/54 (20%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRG 66
            RD  G  P+  A  L    +++ L         +             + A  G
Sbjct: 106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS---------NHARIDAAEG 150

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 33/139 (23%)

Query: 16  RDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
           +    +  L       R  IS  L+   AD  +     ++   T        G       
Sbjct: 38  KSNILYDVLRNNNDEARYKISMFLINKGADIKSR---TKE-GTTLFFPLFQGG-----GN 88

Query: 74  IIDHCPECCEV----------VDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK-- 121
            I    E C++          +      V+   + +++  + + +    P  + +  +  
Sbjct: 89  DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI----PLYKLIFSQSG 144

Query: 122 -----KDVKGNTPFHVLAA 135
                KD  G T       
Sbjct: 145 LQLLIKDKWGLTALE-FVK 162

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 10/162 (6%), Positives = 29/162 (17%), Gaps = 18/162 (11%)

Query: 20  GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK---MTALHLAAGRGDVWMVQEIID 76
            +  +  A  L        L E            +       L          +   +I+
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 77  HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK------KDVKGNTPF 130
              +  +     G  +               +       +  + K               
Sbjct: 64  KGAD-IKSRTKEGTTLFFPLF----QGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

Query: 131 HVLAAVCRQSYDARYDIVPWKIAK--AHFQATNKQNISAEHI 170
                      +    +     ++        +K  ++A   
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 7/69 (10%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 16  RDRHGWTPLHYAVY------LDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDV 68
             +     +   ++       +   + K +    +S   +  +D+  +TAL         
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIF--SQSGLQLLIKDKWGLTALEFVKRCQKP 167

Query: 69  WMVQEIIDH 77
             ++ + D+
Sbjct: 168 IALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 18/96 (18%)

Query: 15  ERDRHGWTPLHYAVY------LDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRG 66
            R + G T                  + K  LE  AD +A     +  K   +       
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL---YKPYK-IVVFKNIFNY 125

Query: 67  DV------WMVQEIIDHCPECCEVVDDRGWNVLHFA 96
            V       + + I         + D  G   L F 
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 14/105 (13%)

Query: 50  SDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLV 109
           S+   +   +  AA  G      E+ +      E  +    + + + ++     + ++ +
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEK---GYEDKESVLKSNILYDVLRNNNDEARYKI 57

Query: 110 DKYPAVRNLIFK------KDVKGNTPFHVLAAVCRQSYDARYDIV 148
             +     LI K      +  +G T F  L            ++ 
Sbjct: 58  SMF-----LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELC 97

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.3 bits (114), Expect = 2e-07
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 13/83 (15%)

Query: 19 HGWTPLHYAV---YLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
          +G TPLH A    +L+   + K LLE  AD +A    D++ + T LHLAA  G + +V+ 
Sbjct: 1  NGRTPLHLAARNGHLE---VVKLLLEAGADVNAK---DKNGR-TPLHLAARNGHLEVVKL 53

Query: 74 IIDHCPECCEVVDDRGWNVLHFA 96
          +++   +     D  G   LH A
Sbjct: 54 LLEAGAD-VNAKDKNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 15 ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
           +D++G TPLH A       + K LLE  AD +A    D++ + T LHLAA  G + +V+
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK---DKNGR-TPLHLAARNGHLEVVK 85

Query: 73 EIIDH 77
           +++ 
Sbjct: 86 LLLEA 90

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 31/126 (24%)

Query: 19  HGWTPLHYAVY---LDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
                  +A+    LD     K  +    D +      E      LH AA  G + +++ 
Sbjct: 6   MCDKEFMWALKNGDLD---EVKDYVAKGEDVNRT---LEG-GRKPLHYAADCGQLEILEF 58

Query: 74  IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHL-VDKYPAVRNLIFK------KDVKG 126
           ++    +     D      L  A   +      H+   K      L+ K      K   G
Sbjct: 59  LLLKGAD-INAPDKHHITPLLSA--VYE----GHVSCVKL-----LLSKGADKTVKGPDG 106

Query: 127 NTPFHV 132
            T F  
Sbjct: 107 LTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
                G  PLHYA    +  I + LL   AD +A    D+    T L  A   G V  V+
Sbjct: 35  RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP---DKHHI-TPLLSAVYEGHVSCVK 90

Query: 73  EIIDHCPECCEVVDDRGWNVLHFA 96
            ++    +   V    G       
Sbjct: 91  LLLSKGAD-KTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRG 66
             D+H  TPL  AVY       K LL   ADK+       D   TA      + 
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK---GPDGL-TAFEATDNQA 117

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAV---YLDRCFISKCLLE--ADKSAALISDEDRKMTAL 59
           LL     + +      +     A    +L    +   L E    +  A+I  E+    A 
Sbjct: 113 LLLTSDEIVKVIQAENYQAFRLAAENGHLH---VLNRLCELAPTEIMAMIQAENY--HAF 167

Query: 60  HLAAGRGDVWMVQEIIDHCPECCEV-VDDRGWNVLHFA 96
            LAA  G + ++  + +  P      +    +    +A
Sbjct: 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
                  L  A    +    + L+   AD +A    D++   T LHLAA  G + +V+ +
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAK---DKNGS-TPLHLAARNGHLEVVKLL 76

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHL 108
           ++   +     D  G      ++ +      + L
Sbjct: 77  LEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
            +D++G TPLH A       + K LLE  AD  A     +    TA  ++   G+  + +
Sbjct: 52  AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ----DKFGKTAFDISIDNGNEDLAE 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	374
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.94
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
2etb_A	256	Transient receptor potential cation channel subfam	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.5e-31  Score=225.74  Aligned_cols=157  Identities=22%  Similarity=0.150  Sum_probs=144.8

Q ss_pred             cHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhcc
Q 041107           22 TPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFY  101 (374)
Q Consensus        22 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  101 (374)
                      ++|+.||+.|+.++|+.|+++|+++ +.+|. +|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+.+|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~-~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDS-DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence            4799999999999999999999999 99999 9999999999999999999999999996 8899999999999999999


Q ss_pred             HHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHH
Q 041107          102 ARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQE  181 (374)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~  181 (374)
                      .+++++|+    +.|+++|.+|.+|+||||+|++.|+.+.++.|     ++.|++++.+|.+|+||+++|...+..   +
T Consensus        83 ~~~v~~Ll----~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L-----l~~gad~~~~d~~G~TpL~~A~~~g~~---~  150 (169)
T 4gpm_A           83 KEVVKLLI----SKGADVNAKDSDGRTPLHHAAENGHKEVVKLL-----ISKGADVNTSDSDGRTPLDLAREHGNE---E  150 (169)
T ss_dssp             HHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---H
T ss_pred             HHHHHHHH----HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCccccCCCCCCHHHHHHHcCCH---H
Confidence            99999999    78999999999999999999999988777766     889999999999999999999888876   8


Q ss_pred             HHHHHHhcCCCC
Q 041107          182 IQELSKADGSGQ  193 (374)
Q Consensus       182 i~~~l~~~~~~~  193 (374)
                      ++++|.+.|+..
T Consensus       151 iv~~Ll~~GA~i  162 (169)
T 4gpm_A          151 VVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHTC----
T ss_pred             HHHHHHHCCCCc
Confidence            899999988764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.4e-31  Score=243.12  Aligned_cols=159  Identities=20%  Similarity=0.134  Sum_probs=146.0

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCE   83 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~   83 (374)
                      ++|...+.++|.+|.+|+||||+|+..|+.+++++|++.++++ +.++. .|.||+|+|+..++.++++.|++.++++ +
T Consensus        70 ~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n  146 (269)
T 4b93_B           70 AKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNA-DQAVPLHLACQQGHFQVVKCLLDSNAKP-N  146 (269)
T ss_dssp             -----CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS-C
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCC-CCCCccccccccChHHHHHHHHHCCCCC-C
Confidence            3455667889999999999999999999999999999999999 88998 9999999999999999999999999996 8


Q ss_pred             cccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCC
Q 041107           84 VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQ  163 (374)
Q Consensus        84 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~  163 (374)
                      .+|..|+||||+|+.+|+.+++++|+    +.|+++|.+|.+|+||||+|+..|+.+.++.|     ++.|+|++.+|++
T Consensus       147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll----~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~L-----l~~Gad~~~~d~~  217 (269)
T 4b93_B          147 KKDLSGNTPLIYACSGGHHELVALLL----QHGASINASNNKGNTALHEAVIEKHVFVVELL-----LLHGASVQVLNKR  217 (269)
T ss_dssp             CCCTTCCCHHHHHHHTTCGGGHHHHH----HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH-----HHTTCCSCCCCTT
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHH----HCCCCCCccccCCCcHHHHHHHcCCHHHHHHH-----HHCCCCCCCcCCC
Confidence            89999999999999999999999999    78999999999999999999999998777766     7899999999999


Q ss_pred             CCChHHHHHhC
Q 041107          164 NISAEHIYRYG  174 (374)
Q Consensus       164 g~t~l~~a~~~  174 (374)
                      |+||+|+|.+.
T Consensus       218 G~TpL~~A~~~  228 (269)
T 4b93_B          218 QRTAVDCAEQN  228 (269)
T ss_dssp             SCCSGGGSCTT
T ss_pred             CCCHHHHHHhC
Confidence            99999999653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.1e-30  Score=225.93  Aligned_cols=174  Identities=17%  Similarity=0.065  Sum_probs=156.2

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++++|...+..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++..
T Consensus        21 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~   98 (201)
T 3hra_A           21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPD   98 (201)
T ss_dssp             HHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             HHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHhccCcc
Confidence            567888888899999999999999999999999999999999999 88998 9999999999999999999999766644


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccch-hhhcccCCCCCcHHHHHHhhcc-----ccccceeeecccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVR-NLIFKKDVKGNTPFHVLAAVCR-----QSYDARYDIVPWKIAKA  155 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~LH~A~~~g~-----~~~~~~l~L~~~l~~g~  155 (374)
                      .+..|..|+||||+|+.+++.+++++|+    +.+ .+++.+|.+|+||||+|+..++     .+.++.|     ++.|+
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~L-----l~~ga  169 (201)
T 3hra_A           99 LNKHNRYGGNALIPAAEKGHIDNVKLLL----EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL-----MENGA  169 (201)
T ss_dssp             TTCCCTTSCCSHHHHHHTTCHHHHHHHH----HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHH-----HHTTC
T ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHH-----HHCCC
Confidence            5889999999999999999999999999    666 7999999999999999999876     4455554     88999


Q ss_pred             ccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          156 HFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       156 ~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      +++.+|.+|+||+++|...+..   +++++|.+.
T Consensus       170 ~~~~~~~~g~t~l~~A~~~~~~---~~~~~Ll~~  200 (201)
T 3hra_A          170 DQSIKDNSGRTAMDYANQKGYT---EISKILAQY  200 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCH---HHHHHHHTC
T ss_pred             CCCccCCCCCCHHHHHHHcCCH---hHHHHHHhc
Confidence            9999999999999999887776   677776654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=1.4e-30  Score=236.77  Aligned_cols=180  Identities=21%  Similarity=0.129  Sum_probs=159.7

Q ss_pred             hHHHHhhCCc--cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCC
Q 041107            2 PLLLLDKKKS--LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP   79 (374)
Q Consensus         2 ~~~lL~~~~~--~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   79 (374)
                      ++.|++....  .++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++
T Consensus        25 v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~~~  102 (282)
T 1oy3_D           25 LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAER-GGHTALHLACRVRAHTCACVLLQPRP  102 (282)
T ss_dssp             HHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCT-TSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCcchhHhhhccCC
Confidence            5667765443  48899999999999999999999999999999999 89999 99999999999999999999999876


Q ss_pred             Cc----------------------------------------------cccccCCCCcHHHHHHHhccHHHHHhHHhhcc
Q 041107           80 EC----------------------------------------------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYP  113 (374)
Q Consensus        80 ~~----------------------------------------------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  113 (374)
                      +.                                              .+..|..|+||||+|+.+|+.+++++|+    
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----  178 (282)
T 1oy3_D          103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR----  178 (282)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH----
T ss_pred             CCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHH----
Confidence            51                                              3566889999999999999999999999    


Q ss_pred             cchhhhcccCCC-CCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107          114 AVRNLIFKKDVK-GNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSG  192 (374)
Q Consensus       114 ~~~~~~n~~d~~-G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~  192 (374)
                      +.|.+++.+|.. |+||||+|++.|+.+.++.|     ++.|++++.+|..|+||+|+|...+..   +++++|.+.|+.
T Consensus       179 ~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L-----l~~gad~~~~d~~g~tpL~~A~~~~~~---~~v~~Ll~~ga~  250 (282)
T 1oy3_D          179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELL-----LKAGADPTARMYGGRTPLGSALLRPNP---ILARLLRAHGAP  250 (282)
T ss_dssp             HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHTSSCH---HHHHHHHHTTCC
T ss_pred             HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHH-----HHcCCCCcccccCCCCHHHHHHHcCCc---HHHHHHHHcCCC
Confidence            788999999865 99999999999987777766     788999999999999999999888776   889999998887


Q ss_pred             CCC
Q 041107          193 QYP  195 (374)
Q Consensus       193 ~~~  195 (374)
                      ...
T Consensus       251 ~~~  253 (282)
T 1oy3_D          251 EPE  253 (282)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=2.1e-30  Score=232.84  Aligned_cols=179  Identities=21%  Similarity=0.107  Sum_probs=152.9

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++.++...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++..
T Consensus        39 v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~  116 (253)
T 1yyh_A           39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDN-MGRTPLHAAVSADAQGVFQILIRNRATD  116 (253)
T ss_dssp             -------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSC
T ss_pred             HHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            566777777766778999999999999999999999999999999 88998 9999999999999999999999999855


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                      .+..|..|+||||+|+..++.+++++|+    +.|.++|.+|.+|+||||+|+..|+.+.++.|     ++.|++++.+|
T Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~  187 (253)
T 1yyh_A          117 LDARMHDGTTPLILAARLAVEGMLEDLI----NSHADVNAVDDLGKSALHWAAAVNNVDAAVVL-----LKNGANKDMQN  187 (253)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCSSHHHHHH----HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH-----HHTTCCTTCCC
T ss_pred             ccccCCCCCcHHHHHHHcChHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCCcC
Confidence            5888999999999999999999999998    78899999999999999999999987777666     78999999999


Q ss_pred             CCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      ..|+||+|+|...+..   +++++|.+.++...
T Consensus       188 ~~g~tpL~~A~~~~~~---~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          188 NREETPLFLAAREGSY---ETAKVLLDHFANRD  217 (253)
T ss_dssp             TTSCCHHHHHHHHTCH---HHHHHHHHTTCCTT
T ss_pred             CCCCCHHHHHHHCCCH---HHHHHHHHcCCCcc
Confidence            9999999999887776   78888888776543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1e-30  Score=224.83  Aligned_cols=164  Identities=19%  Similarity=0.137  Sum_probs=150.5

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG   89 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g   89 (374)
                      +.++|.+|.+|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|
T Consensus        25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g  101 (192)
T 2rfm_A           25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDI-EGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSG  101 (192)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTS
T ss_pred             HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccc-cCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCC
Confidence            3457889999999999999999999999999999998 88998 9999999999999999999999999996 8889999


Q ss_pred             CcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHH
Q 041107           90 WNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEH  169 (374)
Q Consensus        90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~  169 (374)
                      +||||+|+..++.+++++|+    +.|.+++.+|.+|+||||+|+..|+.+.++.|     ++.|++++.+|..|+||++
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~  172 (192)
T 2rfm_A          102 KTPLMWSIIFGYSEMSYFLL----EHGANVNDRNLEGETPLIVASKYGRSEIVKKL-----LELGADISARDLTGLTAEA  172 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH----HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH-----HHTTCCTTCBCTTSCBHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCcCCCCCCHHH
Confidence            99999999999999999998    77899999999999999999999987777666     7889999999999999999


Q ss_pred             HHHhCCCccHHHHHHHHHh
Q 041107          170 IYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       170 ~a~~~~~~~~~~i~~~l~~  188 (374)
                      +|...+..   +++++|.+
T Consensus       173 ~A~~~~~~---~~v~~Ll~  188 (192)
T 2rfm_A          173 SARIFGRQ---EVIKIFTE  188 (192)
T ss_dssp             HHHHTTCH---HHHHHHHH
T ss_pred             HHHHhCcH---HHHHHHHh
Confidence            99887776   56665554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=1.7e-30  Score=229.91  Aligned_cols=175  Identities=19%  Similarity=0.104  Sum_probs=150.9

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccc----ccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAA----LISDEDRKMTALHLAAGRGDVWMVQEIIDH   77 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~   77 (374)
                      ++.|++..+.+++.+|.+|+||||+|+..|+.+++++|+++++++.    +.+|. .|+||||+|+..|+.+++++|+++
T Consensus        19 v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~   97 (232)
T 2rfa_A           19 LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY-EGQTALHIAVINQNVNLVRALLAR   97 (232)
T ss_dssp             HHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC-CCcCHHHHHHHcCCHHHHHHHHhC
Confidence            5677887789999999999999999999999999999999988763    34566 899999999999999999999999


Q ss_pred             CCCccccccC-------------CCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccc--
Q 041107           78 CPECCEVVDD-------------RGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYD--  142 (374)
Q Consensus        78 ~~~~~~~~d~-------------~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~--  142 (374)
                      ++++ +..+.             .|+||||+|+.+|+.+++++|+    +.|+++|.+|.+|+||||+|+..|+.+.+  
T Consensus        98 g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~  172 (232)
T 2rfa_A           98 GASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI----EHGADIRAQDSLGNTVLHILILQPNKTFACQ  172 (232)
T ss_dssp             TCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHH
T ss_pred             CCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCChHHHHH
Confidence            9986 44443             7999999999999999999998    77899999999999999999999886655  


Q ss_pred             --ceeeecccccccccc------ccccCCCCChHHHHHhCCCccHHHHHHHHHhcC
Q 041107          143 --ARYDIVPWKIAKAHF------QATNKQNISAEHIYRYGFPDLEQEIQELSKADG  190 (374)
Q Consensus       143 --~~l~L~~~l~~g~~~------~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~  190 (374)
                        +.|     ++.|++.      +..|.+|+||+++|...+..   +++++|.+.+
T Consensus       173 i~~~L-----l~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~---~~v~~Ll~~g  220 (232)
T 2rfa_A          173 MYNLL-----LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI---VMFQHLMQKR  220 (232)
T ss_dssp             HHHHH-----HHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH---HHHHHHHHHH
T ss_pred             HHHHH-----HhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH---HHHHHHHhcC
Confidence              444     7888887      68999999999999877766   6666666543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.1e-30  Score=232.05  Aligned_cols=178  Identities=20%  Similarity=0.197  Sum_probs=158.0

Q ss_pred             hHHHHhhCC---ccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 041107            2 PLLLLDKKK---SLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC   78 (374)
Q Consensus         2 ~~~lL~~~~---~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~   78 (374)
                      ++.|++..+   .+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.+
T Consensus        24 v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~  101 (236)
T 1ikn_D           24 TMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDF-RGNTPLHLACEQGCLASVGVLTQSC  101 (236)
T ss_dssp             SSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT-TCCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             HHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            344555443   368999999999999999999999999999999999 89999 9999999999999999999999998


Q ss_pred             CC-----ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCC-CCCcHHHHHHhhccccccceeeeccccc
Q 041107           79 PE-----CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDV-KGNTPFHVLAAVCRQSYDARYDIVPWKI  152 (374)
Q Consensus        79 ~~-----~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~-~G~T~LH~A~~~g~~~~~~~l~L~~~l~  152 (374)
                      ++     .....|..|+||||+|+.+++.+++++|+    +.|.+++.+|. +|+||||+|+..|+...++.|     ++
T Consensus       102 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L-----l~  172 (236)
T 1ikn_D          102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV----SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL-----LK  172 (236)
T ss_dssp             TTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH-----HT
T ss_pred             cchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HH
Confidence            64     24677889999999999999999999999    78999999998 999999999999987777766     78


Q ss_pred             cccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          153 AKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       153 ~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      .|++++..|..|+||+++|...+..   +++++|.+.|+..
T Consensus       173 ~ga~~~~~~~~g~tpl~~A~~~~~~---~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          173 CGADVNRVTYQGYSPYQLTWGRPST---RIQQQLGQLTLEN  210 (236)
T ss_dssp             TTCCSCCCCTTCCCGGGGCTTSSCH---HHHHHHHTTSCGG
T ss_pred             cCCCCCcccCCCCCHHHHHHccCch---HHHHHHHHcchhh
Confidence            8999999999999999999887776   8889999887754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=9.6e-30  Score=224.77  Aligned_cols=177  Identities=20%  Similarity=0.126  Sum_probs=164.1

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      +++++...+...+.+|.+|+||||+|+..|+.+++++|+++|.++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        22 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   99 (231)
T 3aji_A           22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHV   99 (231)
T ss_dssp             HHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCC-CCCCHHHHHHHcCHHHHHHHHHHcCCCC
Confidence            577888989999999999999999999999999999999999998 88998 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                       +.+|..|+||||+|+..++.+++++|+    +.+.+++.+|..|+||||+|+..|+.+.++.|     ++.|++++.+|
T Consensus       100 -~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~  169 (231)
T 3aji_A          100 -NAVNQNGCTPLHYAASKNRHEIAVMLL----EGGANPDAKDHYDATAMHRAAAKGNLKMVHIL-----LFYKASTNIQD  169 (231)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HHTTCCSCCCC
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH-----HhcCCCccccC
Confidence             888999999999999999999999998    77889999999999999999999987777766     78999999999


Q ss_pred             CCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      .+|+||+|+|...+..   +++++|.+.|+..
T Consensus       170 ~~g~t~L~~A~~~~~~---~~v~~Ll~~ga~~  198 (231)
T 3aji_A          170 TEGNTPLHLACDEERV---EEAKFLVTQGASI  198 (231)
T ss_dssp             TTSCCHHHHHHHTTCH---HHHHHHHHTTCCS
T ss_pred             CCCCCHHHHHHHCCCH---HHHHHHHHCCCCC
Confidence            9999999999887776   7888888877654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=5.9e-30  Score=224.93  Aligned_cols=179  Identities=22%  Similarity=0.119  Sum_probs=159.4

Q ss_pred             ChHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107            1 VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE   80 (374)
Q Consensus         1 i~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   80 (374)
                      +++.|++.+.+..+..|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++.
T Consensus         6 ~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~   83 (223)
T 2f8y_A            6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDN-MGRTPLHAAVSADAQGVFQILIRNRAT   83 (223)
T ss_dssp             CEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred             HHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3456777776666667899999999999999999999999999998 88898 999999999999999999999999985


Q ss_pred             ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107           81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT  160 (374)
Q Consensus        81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~  160 (374)
                      ..+..|..|+||||+|+..++.+++++|+    +.+.+++.+|.+|+||||+|+..|+.+.++.|     ++.|++++..
T Consensus        84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~  154 (223)
T 2f8y_A           84 DLDARMHDGTTPLILAARLAVEGMLEDLI----NSHADVNAVDDLGKSALHWAAAVNNVDAAVVL-----LKNGANKDMQ  154 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH-----HHTTCCTTCC
T ss_pred             CcccCCCCCCcHHHHHHHhCcHHHHHHHH----HcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHH-----HHcCCCCCCc
Confidence            56888999999999999999999999998    77889999999999999999999987777666     7889999999


Q ss_pred             cCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          161 NKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       161 n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      |..|.||+|+|...+..   +++++|.+.++..
T Consensus       155 ~~~g~t~L~~A~~~~~~---~~v~~Ll~~ga~~  184 (223)
T 2f8y_A          155 NNREETPLFLAAREGSY---ETAKVLLDHFANR  184 (223)
T ss_dssp             CTTCCCHHHHHHHHTCH---HHHHHHHHTTCCT
T ss_pred             CCCCcCHHHHHHHcCCH---HHHHHHHHcCCCC
Confidence            99999999999887776   7888888876654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.1e-29  Score=221.42  Aligned_cols=179  Identities=20%  Similarity=0.133  Sum_probs=162.1

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++. +..++.+|..|+||||+|+..|+.+++++|+++++...+.++. .|+||||+|+..|+.+++++|++.++++
T Consensus        41 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  118 (223)
T 2f8y_A           41 AKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHADV  118 (223)
T ss_dssp             HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHcCCCC
Confidence            4555554 6778999999999999999999999999999998844488888 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                       +..|..|+||||+|+..++.+++++|+    +.|.+++.+|.+|+||||+|++.|+.+.++.|     ++.|++++..|
T Consensus       119 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~  188 (223)
T 2f8y_A          119 -NAVDDLGKSALHWAAAVNNVDAAVVLL----KNGANKDMQNNREETPLFLAAREGSYETAKVL-----LDHFANRDITD  188 (223)
T ss_dssp             -TCBCTTSCBHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH-----HHTTCCTTCCC
T ss_pred             -cCcCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHH-----HHcCCCCcccc
Confidence             888999999999999999999999999    77899999999999999999999987777666     88999999999


Q ss_pred             CCCCChHHHHHhCCCccHHHHHHHHHhcCCCCCC
Q 041107          162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQYP  195 (374)
Q Consensus       162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~~  195 (374)
                      ..|.||+++|...+..   +++++|.+.++..++
T Consensus       189 ~~g~t~l~~A~~~~~~---~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          189 HMDRLPRDIAQERMHH---DIVRLLDEYNLVRSP  219 (223)
T ss_dssp             TTCCCHHHHHHHTTCH---HHHHHHHHTTCSSCC
T ss_pred             ccCCCHHHHHHHhcch---HHHHHHHHcCCCccc
Confidence            9999999999888876   889999998876654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=8.1e-30  Score=215.05  Aligned_cols=146  Identities=21%  Similarity=0.191  Sum_probs=130.1

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.||+ .+.++|.+|.+|+||||+|+..|+.++++.|+++|+++ +.+|. +|+||||+|+..|+.+++++|+++|+++
T Consensus        20 v~~Ll~-~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gadv   96 (169)
T 4gpm_A           20 VKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDS-DGRTPLHHAAENGHKEVVKLLISKGADV   96 (169)
T ss_dssp             HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhcc-CCCCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence            556665 46789999999999999999999999999999999999 99999 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT  160 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~  160 (374)
                       +.+|.+|+||||+|+.+|+.+++++|+    +.|++++.+|.+|+||||+|++.|+.++++.|     ++.|++++..
T Consensus        97 -n~~d~~G~TpLh~A~~~g~~~~v~~Ll----~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~L-----l~~GA~ie~~  165 (169)
T 4gpm_A           97 -NAKDSDGRTPLHHAAENGHKEVVKLLI----SKGADVNTSDSDGRTPLDLAREHGNEEVVKLL-----EKQGGWLEHH  165 (169)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HTC-------
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCcCCC
Confidence             889999999999999999999999999    78999999999999999999999987777665     8999988643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=1.3e-29  Score=227.79  Aligned_cols=173  Identities=20%  Similarity=0.142  Sum_probs=156.5

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++ .+..++.+|..|+||||+|+..|+.+++++|+++++...+.++. .|+||||+|+..|+.+++++|++.++++
T Consensus        73 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  150 (253)
T 1yyh_A           73 AKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHADV  150 (253)
T ss_dssp             HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSHHHHHHHTTCCT
T ss_pred             HHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHHHHHHHHcCCCC
Confidence            445555 56789999999999999999999999999999998843388998 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                       +..|..|+||||+|+.+++.+++++|+    +.|+++|.+|.+|+||||+|++.|+.+.++.|     ++.|++++.+|
T Consensus       151 -~~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~~~~~d  220 (253)
T 1yyh_A          151 -NAVDDLGKSALHWAAAVNNVDAAVVLL----KNGANKDMQNNREETPLFLAAREGSYETAKVL-----LDHFANRDITD  220 (253)
T ss_dssp             -TCBCTTSCBHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HHTTCCTTCCC
T ss_pred             -CCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHH-----HHcCCCccccc
Confidence             888999999999999999999999999    78999999999999999999999987777665     89999999999


Q ss_pred             CCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          162 KQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      ..|+||+++|...++.   ++.+++...
T Consensus       221 ~~g~tpl~~A~~~g~~---~i~~~l~~~  245 (253)
T 1yyh_A          221 HMDRLPRDIAQERMHH---DIVRLLDLE  245 (253)
T ss_dssp             TTCCCHHHHHHHTTCH---HHHHHHHC-
T ss_pred             cCCCCHHHHHHHcCCH---HHHHHHHHH
Confidence            9999999999988887   777777763

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=2.3e-29  Score=221.74  Aligned_cols=179  Identities=21%  Similarity=0.191  Sum_probs=159.0

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcC--CcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC-
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEAD--KSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC-   78 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~-   78 (374)
                      ++.|++.++...+.+|.+|+||||+|+..|+.+++++|++++  .++....+. .|+||||+|+..|+.+++++|++++ 
T Consensus        18 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~   96 (228)
T 2dzn_A           18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-SGWTPFHIACSVGNLEVVKSLYDRPL   96 (228)
T ss_dssp             HHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT-TSCCHHHHHHHHCCHHHHHHHHSSSS
T ss_pred             HHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            578889988888889999999999999999999999999998  555222777 9999999999999999999999998 


Q ss_pred             -CCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccc-cc
Q 041107           79 -PECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAK-AH  156 (374)
Q Consensus        79 -~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g-~~  156 (374)
                       +++ +..|..|+||||+|+..++.+++++|+    +.|.+++.+|.+|+||||+|+..|+.+.++.|     ++.| ++
T Consensus        97 ~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~  166 (228)
T 2dzn_A           97 KPDL-NKITNQGVTCLHLAVGKKWFEVSQFLI----ENGASVRIKDKFNQIPLHRAASVGSLKLIELL-----CGLGKSA  166 (228)
T ss_dssp             CCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH-----HTTTCCC
T ss_pred             Cccc-ccCCcCCCCHHHHHHHcCCHhHHHHHH----HcCCCccccCCCCCCHHHHHHHcCCHHHHHHH-----HhcCccc
Confidence             664 788999999999999999999999999    77899999999999999999999987777766     7778 99


Q ss_pred             cccccCCCCChHHHHHhCCCccHHHHHHHHH-hcCCCCC
Q 041107          157 FQATNKQNISAEHIYRYGFPDLEQEIQELSK-ADGSGQY  194 (374)
Q Consensus       157 ~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~-~~~~~~~  194 (374)
                      ++..|.+|+||+|+|...+..   +++++|. +.|+...
T Consensus       167 ~~~~d~~g~t~L~~A~~~~~~---~~v~~Ll~~~ga~~~  202 (228)
T 2dzn_A          167 VNWQDKQGWTPLFHALAEGHG---DAAVLLVEKYGAEYD  202 (228)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHCCCSC
T ss_pred             ccCcCCCCCCHHHHHHHcCCH---HHHHHHHHhcCCCCC
Confidence            999999999999999888776   7777777 6666543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=8.2e-30  Score=225.21  Aligned_cols=173  Identities=20%  Similarity=0.216  Sum_probs=155.3

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++. +..++.+|..|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|++.++++
T Consensus        56 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  132 (231)
T 3aji_A           56 VEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANP  132 (231)
T ss_dssp             HHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4455554 6779999999999999999999999999999999999 88998 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                       +..|..|+||||+|+..++.+++++|+    +.+.++|.+|.+|+||||+|+..|+.+.++.|     ++.|++++.+|
T Consensus       133 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~  202 (231)
T 3aji_A          133 -DAKDHYDATAMHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHLACDEERVEEAKFL-----VTQGASIYIEN  202 (231)
T ss_dssp             -TCCCTTSCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCSCCCC
T ss_pred             -CCcCCCCCcHHHHHHHcCCHHHHHHHH----hcCCCccccCCCCCCHHHHHHHCCCHHHHHHH-----HHCCCCCCCCC
Confidence             888999999999999999999999998    78899999999999999999999987777665     78999999999


Q ss_pred             CCCCChHHHHHhCCCccHHHHHHHHHhcC
Q 041107          162 KQNISAEHIYRYGFPDLEQEIQELSKADG  190 (374)
Q Consensus       162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~  190 (374)
                      .+|+||+++|..++..   ++.+++.+.+
T Consensus       203 ~~g~t~l~~A~~~~~~---~i~~lL~~~~  228 (231)
T 3aji_A          203 KEEKTPLQVAKGGLGL---ILKRLAEGEE  228 (231)
T ss_dssp             TTSCCHHHHSCHHHHH---HHHHHHHHHH
T ss_pred             CCCCCHHHHHHhhHHH---HHHHHHcccc
Confidence            9999999999766554   6666666543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=9.9e-29  Score=219.40  Aligned_cols=177  Identities=19%  Similarity=0.104  Sum_probs=159.2

Q ss_pred             hHHHHh---hCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 041107            2 PLLLLD---KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC   78 (374)
Q Consensus         2 ~~~lL~---~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~   78 (374)
                      ++.|++   ..+..++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.++++.|++.+
T Consensus        25 v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~  102 (241)
T 1k1a_A           25 VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDR-HGQTAAHLACEHRSPTCLRALLDSA  102 (241)
T ss_dssp             HHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            445555   578889999999999999999999999999999999998 88898 9999999999999999999999999


Q ss_pred             C----CccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeecccccc
Q 041107           79 P----ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIA  153 (374)
Q Consensus        79 ~----~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~  153 (374)
                      +    + .+..|..|+||||+|+..++.+++++|+    +.|.+++.+| ..|+||||+|++.|+.+.++.|     ++.
T Consensus       103 ~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~  172 (241)
T 1k1a_A          103 APGTLD-LEARNYDGLTALHVAVNTECQETVQLLL----ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL-----LQH  172 (241)
T ss_dssp             CTTSCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH-----HHT
T ss_pred             CCcccc-ccccCcCCCcHHHHHHHcCCHHHHHHHH----HcCCCcccccccCCCcHHHHHHHcCCHHHHHHH-----HHc
Confidence            7    4 3778899999999999999999999998    7788999999 8999999999999987777666     788


Q ss_pred             ccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          154 KAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       154 g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      |++++..|.+|.||+|+|...+..   +++++|.+.|+..
T Consensus       173 g~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~ga~~  209 (241)
T 1k1a_A          173 GANVNAQMYSGSSALHSASGRGLL---PLVRTLVRSGADS  209 (241)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHHTCH---HHHHHHHHTTCCT
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCH---HHHHHHHhcCCCC
Confidence            999999999999999999887776   7888888877654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=8.1e-29  Score=231.85  Aligned_cols=182  Identities=20%  Similarity=0.120  Sum_probs=146.4

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++++|...+..++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        40 v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~~~  117 (351)
T 3utm_A           40 LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDK-GGLVPLHNACSYGHYEVTELLLKHGACV  117 (351)
T ss_dssp             HHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCcHHHHHHHCCCHHHHHHHHHCCCCC
Confidence            466777778888888888999999999999999999999988888 88888 8899999999999999999999988886


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhc-------------------------------------------------
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKY-------------------------------------------------  112 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~-------------------------------------------------  112 (374)
                       +..|..|+||||+|+.+++.+++++|++..                                                 
T Consensus       118 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (351)
T 3utm_A          118 -NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK  196 (351)
T ss_dssp             -TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHH
Confidence             777888888888888888888888887531                                                 


Q ss_pred             -------------------------------------ccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccc
Q 041107          113 -------------------------------------PAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKA  155 (374)
Q Consensus       113 -------------------------------------~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~  155 (374)
                                                           .+.|.++|.+|.+|+||||+|++.|+.+.++.|     ++.|+
T Consensus       197 ~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L-----l~~ga  271 (351)
T 3utm_A          197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL-----HKHGA  271 (351)
T ss_dssp             HTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH-----HHTTC
T ss_pred             HHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHCCC
Confidence                                                 123445677788888888888888876666655     77888


Q ss_pred             ccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          156 HFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       156 ~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      +++.+|..|+||+|+|...++.   +++++|.+.|+...
T Consensus       272 ~~n~~d~~g~t~L~~A~~~~~~---~~v~~Ll~~gad~~  307 (351)
T 3utm_A          272 KMNALDSLGQTALHRAALAGHL---QTCRLLLSYGSDPS  307 (351)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCH---HHHHHHHHTTCCTT
T ss_pred             CCCCcCCCCCCHHHHHHHcCcH---HHHHHHHHcCCCCC
Confidence            8888888888888888776665   77777777766543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=9.4e-30  Score=228.75  Aligned_cols=171  Identities=17%  Similarity=0.058  Sum_probs=144.4

Q ss_pred             hCCccccc----cCCCCCcHHHHHHHc---CCHHHHHHHhhcCCcccc----------cccCCCCchHHHHHHHcCCHHH
Q 041107            8 KKKSLTRE----RDRHGWTPLHYAVYL---DRCFISKCLLEADKSAAL----------ISDEDRKMTALHLAAGRGDVWM   70 (374)
Q Consensus         8 ~~~~~~~~----~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~----------~~d~~~g~tpLh~Aa~~g~~~~   70 (374)
                      ..+..++.    +|.+|+||||+|+..   |+.+++++|+++|++...          .+|. .|+||||+|+..|+.++
T Consensus        27 ~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~  105 (256)
T 2etb_A           27 WNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFY-QGHSALHIAIEKRSLQC  105 (256)
T ss_dssp             HHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTT-TTCCHHHHHHHTTCHHH
T ss_pred             HcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccc-cCCCHHHHHHHcCCHHH
Confidence            45677887    899999999999999   999999999998877621          1235 79999999999999999


Q ss_pred             HHHHHHhCCCccccccCC-------------CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHh--
Q 041107           71 VQEIIDHCPECCEVVDDR-------------GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAA--  135 (374)
Q Consensus        71 v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~--  135 (374)
                      +++|+++|+++ +..|..             |+||||+|+.+|+.+++++|++.. ..|+++|.+|.+|+||||+|+.  
T Consensus       106 v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~-~~ga~~n~~d~~g~TpLh~A~~~~  183 (256)
T 2etb_A          106 VKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP-HQPASLEATDSLGNTVLHALVMIA  183 (256)
T ss_dssp             HHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS-SCCCCTTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc-ccCCCcCccCCCCCCHHHHHHHcc
Confidence            99999999996 667765             999999999999999999999210 1889999999999999999999  


Q ss_pred             hcccc-------ccceeeecccccccccc-------ccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          136 VCRQS-------YDARYDIVPWKIAKAHF-------QATNKQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       136 ~g~~~-------~~~~l~L~~~l~~g~~~-------~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      .++.+       +++.|     ++.|+++       +.+|.+|+||+|+|...+..   +++++|.+.
T Consensus       184 ~~~~~~~~~~~~iv~~L-----l~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~---~~v~~Ll~~  243 (256)
T 2etb_A          184 DNSPENSALVIHMYDGL-----LQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI---EIFRHILQR  243 (256)
T ss_dssp             CSCHHHHHHHHHHHHHH-----HHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH---HHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHH-----HHcCCCcccccccccccCCCCCCHHHHHHHhCCH---HHHHHHHhC
Confidence            44433       44444     8899999       99999999999999887776   666666553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=2e-28  Score=217.13  Aligned_cols=177  Identities=22%  Similarity=0.123  Sum_probs=156.6

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++ .+..++..|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.++..
T Consensus        27 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  103 (237)
T 3b7b_A           27 CHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMD  103 (237)
T ss_dssp             HHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             HHHHHH-cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            344554 46778899999999999999999999999999999998 88888 9999999999999999999999999555


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                      .+..|..|+||||+|+..++.+++++|+    +.|.+++.+|.+|+||||+|+..|+.+.++.|     ++.|++++..|
T Consensus       104 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L-----l~~g~~~~~~~  174 (237)
T 3b7b_A          104 VNCQDDGGWTPMIWATEYKHVDLVKLLL----SKGSDINIRDNEENICLHWAAFSGCVDIAEIL-----LAAKCDLHAVN  174 (237)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH-----HTTTCCTTCCC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH-----HHcCCCCCCcC
Confidence            5888999999999999999999999998    77889999999999999999999987777666     78899999999


Q ss_pred             CCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      ..|.||+|+|...+..   ++++++.+.++..
T Consensus       175 ~~g~t~L~~A~~~~~~---~~v~~Ll~~gad~  203 (237)
T 3b7b_A          175 IHGDSPLHIAARENRY---DCVVLFLSRDSDV  203 (237)
T ss_dssp             TTCCCHHHHHHHTTCH---HHHHHHHTTTCCT
T ss_pred             CCCCCHHHHHHHhCCH---hHHHHHHHcCCCC
Confidence            9999999999887776   7888888876654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=6.2e-29  Score=208.72  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=141.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV   98 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~   98 (374)
                      .|.||||.|+..|+.++++.|++.+.++ +.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            6899999999999999999999999888 89999 9999999999999999999999999986 8889999999999999


Q ss_pred             hccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCcc
Q 041107           99 SFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDL  178 (374)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~  178 (374)
                      +++.+++++|+    +.+.+++.+|.+|+||||+|+..|+.+.++.|     ++.|++++..|.+|+||+++|...+.. 
T Consensus        79 ~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~g~t~l~~A~~~~~~-  148 (167)
T 3v31_A           79 KGYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML-----LESGADPTIETDSGYNSMDLAVALGYR-  148 (167)
T ss_dssp             HTCHHHHHHHH----HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHHTCH-
T ss_pred             cCCHHHHHHHH----HCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCCcCCCCCCHHHHHHHcCcH-
Confidence            99999999999    77899999999999999999999987777666     789999999999999999999877665 


Q ss_pred             HHHHHHHHHh
Q 041107          179 EQEIQELSKA  188 (374)
Q Consensus       179 ~~~i~~~l~~  188 (374)
                        ++.+++.+
T Consensus       149 --~~~~~L~~  156 (167)
T 3v31_A          149 --SVQQVIES  156 (167)
T ss_dssp             --HHHHHHHH
T ss_pred             --HHHHHHHH
Confidence              44444443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.1e-28  Score=207.94  Aligned_cols=160  Identities=19%  Similarity=0.137  Sum_probs=144.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107           15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH   94 (374)
Q Consensus        15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   94 (374)
                      .....+.||||.|++.|+.+++++|+++|.++ +.+|. .|+||||+|+..|+.+++++|+++++++ +..|..|+||||
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   85 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDA-SGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLR   85 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHH
Confidence            34567889999999999999999999999998 88998 9999999999999999999999999986 888999999999


Q ss_pred             HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhC
Q 041107           95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYG  174 (374)
Q Consensus        95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~  174 (374)
                      +|+.+++.+++++|+    +.|.+++.+|.+|+||||+|++.|+.+.++.|     ++.|++++.+|..|.||+++|...
T Consensus        86 ~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~g~t~l~~A~~~  156 (169)
T 2y1l_E           86 LAALFGHLEIVEVLL----KNGADVNANDMEGHTPLHLAAMFGHLEIVEVL-----LKNGADVNAQDKFGKTAFDISIDN  156 (169)
T ss_dssp             HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCCcCCCCCCHHHHHHHh
Confidence            999999999999999    78899999999999999999999987777666     789999999999999999999887


Q ss_pred             CCccHHHHHHHHHhc
Q 041107          175 FPDLEQEIQELSKAD  189 (374)
Q Consensus       175 ~~~~~~~i~~~l~~~  189 (374)
                      +..   +++++|.+.
T Consensus       157 ~~~---~~~~~L~~~  168 (169)
T 2y1l_E          157 GNE---DLAEILQKL  168 (169)
T ss_dssp             TCH---HHHHHHHTC
T ss_pred             CCH---HHHHHHHHc
Confidence            776   677777653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=5.2e-29  Score=208.76  Aligned_cols=161  Identities=20%  Similarity=0.125  Sum_probs=142.1

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 041107           16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHF   95 (374)
Q Consensus        16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   95 (374)
                      .|.+|.||||.|++.|+.++++.|++.+....+..+. .|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc-CCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHH
Confidence            4678999999999999999999999965544477787 8999999999999999999999999996 8899999999999


Q ss_pred             HHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCC
Q 041107           96 AMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGF  175 (374)
Q Consensus        96 A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~  175 (374)
                      |+.+++.+++++|+    +.|.++|.+|.+|+||||+|+..|+.+.++.|     ++.|++++.+|.+|+||+++|.. +
T Consensus        82 A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~~a~~-~  151 (165)
T 3twr_A           82 ACSYGHYEVAELLV----KHGAVVNVADLWKFTPLHEAAAKGKYEICKLL-----LQHGADPTKKNRDGNTPLDLVKD-G  151 (165)
T ss_dssp             HHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCTGGGSCT-T
T ss_pred             HHHcCcHHHHHHHH----hCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCcccCCCCCChhHhHhc-C
Confidence            99999999999999    78999999999999999999999987777666     78899999999999999999876 3


Q ss_pred             CccHHHHHHHHHhcCC
Q 041107          176 PDLEQEIQELSKADGS  191 (374)
Q Consensus       176 ~~~~~~i~~~l~~~~~  191 (374)
                      ..   ++.++|.+.++
T Consensus       152 ~~---~i~~~L~~~gA  164 (165)
T 3twr_A          152 DT---DIQDLLRGDAA  164 (165)
T ss_dssp             CH---HHHHHHHTC--
T ss_pred             Ch---HHHHHHhhccc
Confidence            33   77787777554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=5.5e-29  Score=225.94  Aligned_cols=178  Identities=20%  Similarity=0.132  Sum_probs=148.9

Q ss_pred             hHHHHh---hCCcccc----ccCCCCCcHHHHHHHc---CCHHHHHHHhhcCCccc------c----cccCCCCchHHHH
Q 041107            2 PLLLLD---KKKSLTR----ERDRHGWTPLHYAVYL---DRCFISKCLLEADKSAA------L----ISDEDRKMTALHL   61 (374)
Q Consensus         2 ~~~lL~---~~~~~~~----~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~------~----~~d~~~g~tpLh~   61 (374)
                      ++.|++   ..+..++    ..|..|+||||+|+..   |+.+++++|+++|++..      +    .+|. .|+||||+
T Consensus        29 v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~-~g~tpL~~  107 (273)
T 2pnn_A           29 LESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY-KGQTALHI  107 (273)
T ss_dssp             TTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTT-TTCCHHHH
T ss_pred             HHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccC-CCCCHHHH
Confidence            455665   2444444    4588999999999987   99999999999876531      2    2556 89999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccC--------------CCCcHHHHHHHhccHHHHHhHHhhccc---chhhhcccCC
Q 041107           62 AAGRGDVWMVQEIIDHCPECCEVVDD--------------RGWNVLHFAMVSFYARDLKHLVDKYPA---VRNLIFKKDV  124 (374)
Q Consensus        62 Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~~~~~~Ll~~~~~---~~~~~n~~d~  124 (374)
                      |+..|+.+++++|+++|+++ +..|.              .|+||||+|+.+|+.+++++|+    +   .|+++|.+|.
T Consensus       108 A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll----~~~~~gad~~~~d~  182 (273)
T 2pnn_A          108 AIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL----QNSWQPADISARDS  182 (273)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH----HCSSCCCCTTCCCT
T ss_pred             HHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH----hcccCCCCceeeCC
Confidence            99999999999999999996 66665              7999999999999999999999    6   7899999999


Q ss_pred             CCCcHHHHHHhhcc---------ccccceeeeccccccccccc-------cccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107          125 KGNTPFHVLAAVCR---------QSYDARYDIVPWKIAKAHFQ-------ATNKQNISAEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       125 ~G~T~LH~A~~~g~---------~~~~~~l~L~~~l~~g~~~~-------~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      +|+||||+|+..|+         ..+++.|     ++.|++++       .+|.+|+||+|+|...+..   +++++|.+
T Consensus       183 ~g~tpLh~A~~~~~~~~~~~~~~~~~v~~L-----l~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~---~iv~~Ll~  254 (273)
T 2pnn_A          183 VGNTVLHALVEVADNTVDNTKFVTSMYNEI-----LILGAKLHPTLKLEEITNRKGLTPLALAASSGKI---GVLAYILQ  254 (273)
T ss_dssp             TSCCHHHHHHHHCCSCHHHHHHHHHHHHHH-----HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH---HHHHHHHH
T ss_pred             CCCcHHHHHHHccCcchhHHHHHHHHHHHH-----HHhhhhcccccccccccCCCCCCHHHHHHHhChH---HHHHHHHH
Confidence            99999999999886         2344444     78899996       5999999999999888876   88888888


Q ss_pred             cCCCC
Q 041107          189 DGSGQ  193 (374)
Q Consensus       189 ~~~~~  193 (374)
                      .|+..
T Consensus       255 ~ga~d  259 (273)
T 2pnn_A          255 REIHE  259 (273)
T ss_dssp             HHTC-
T ss_pred             CCCCC
Confidence            77743

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=2e-28  Score=224.81  Aligned_cols=177  Identities=20%  Similarity=0.129  Sum_probs=137.9

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.||+. +..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        56 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  132 (299)
T 1s70_B           56 VLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHV  132 (299)
T ss_dssp             HHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            4566665 4678999999999999999999999999999999999 88998 9999999999999999999999999986


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhh--------------------------cccCCCCCcHHHHHHh
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI--------------------------FKKDVKGNTPFHVLAA  135 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~--------------------------n~~d~~G~T~LH~A~~  135 (374)
                       +..|..|.||||+|+..++.++++.++..   .+.++                          ...|..|+||||+|+.
T Consensus       133 -~~~~~~g~t~l~~A~~~~~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~  208 (299)
T 1s70_B          133 -GAVNSEGDTPLDIAEEEAMEELLQNEVNR---QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA  208 (299)
T ss_dssp             -TCCCTTSCCHHHHCCSHHHHHHHHHHHHH---HTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHH
T ss_pred             -CCcCCCCCCHHHHHHhcchHHHHHHHHhh---cCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHH
Confidence             67787888888888777777777766531   11111                          2245677888888888


Q ss_pred             hccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          136 VCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       136 ~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      .|+...++.|     ++.|++++..|..|.||+|+|...+..   +++++|.+.|+..
T Consensus       209 ~g~~~~v~~L-----l~~g~d~~~~d~~g~tpL~~A~~~~~~---~~v~~Ll~~gad~  258 (299)
T 1s70_B          209 KGYTEVLKLL-----IQARYDVNIKDYDGWTPLHAAAHWGKE---EACRILVENLCDM  258 (299)
T ss_dssp             HTCHHHHHHH-----HTTTCCTTCCCTTCCCHHHHHHHTTCH---HHHHHHHHTTCCT
T ss_pred             CCcHHHHHHH-----HHcCCCCCCcCCCCCcHHHHHHhcCCH---HHHHHHHHcCCCC
Confidence            7776666554     677788888888888888887776665   6666666665543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=3.2e-29  Score=233.87  Aligned_cols=163  Identities=18%  Similarity=0.148  Sum_probs=142.1

Q ss_pred             HHHhhCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCC---HHHHHHHHHhCC
Q 041107            4 LLLDKKKSLTRE-RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGD---VWMVQEIIDHCP   79 (374)
Q Consensus         4 ~lL~~~~~~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~---~~~v~~Ll~~~~   79 (374)
                      ++|...+.++|. +|.+|+||||+||..|+.++|++|+++|+++ +.+|. .|+||||+|+..|+   .++++.|++.+.
T Consensus       114 ~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~  191 (327)
T 1sw6_A          114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLY  191 (327)
T ss_dssp             HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence            455667788999 8999999999999999999999999999999 99999 99999999999998   788888998874


Q ss_pred             CccccccCCCCcHHHHHHH----hccHHHHHhHHhhcccc----------------h-----------------------
Q 041107           80 ECCEVVDDRGWNVLHFAMV----SFYARDLKHLVDKYPAV----------------R-----------------------  116 (374)
Q Consensus        80 ~~~~~~d~~g~t~Lh~A~~----~~~~~~~~~Ll~~~~~~----------------~-----------------------  116 (374)
                      ...+.+|..|+||||+|+.    .|+.+++++|++.....                +                       
T Consensus       192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~L  271 (327)
T 1sw6_A          192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  271 (327)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHH
Confidence            4458899999999999999    89999999998532100                0                       


Q ss_pred             --hhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107          117 --NLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY  173 (374)
Q Consensus       117 --~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~  173 (374)
                        .++|.+|.+|+||||+|++.|+.+.++.|     ++.|++++.+|.+|+||+|+|.+
T Consensus       272 l~~~~n~~d~~G~TpLh~A~~~g~~~~v~~L-----l~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          272 IANMLNAQDSNGDTCLNIAARLGNISIVDAL-----LDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHHTTTCCCTTSCCHHHHHHHHCCHHHHHHH-----HHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             HHhCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCcccCCCCCCHHHHHHh
Confidence              05889999999999999999987777766     78899999999999999999864

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1.7e-28  Score=216.15  Aligned_cols=160  Identities=21%  Similarity=0.202  Sum_probs=144.1

Q ss_pred             hHHHHhhCC-ccccc-cCCCCCcHHHHHHHcCCHHHHHHHhhcC--CcccccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 041107            2 PLLLLDKKK-SLTRE-RDRHGWTPLHYAVYLDRCFISKCLLEAD--KSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH   77 (374)
Q Consensus         2 ~~~lL~~~~-~~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~   77 (374)
                      ++.|++..+ ..++. .|..|+||||+|+..|+.+++++|++++  +++ +.++. .|+||||+|+..|+.+++++|+++
T Consensus        52 v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~  129 (228)
T 2dzn_A           52 TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITN-QGVTCLHLAVGKKWFEVSQFLIEN  129 (228)
T ss_dssp             HHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCc-CCCCHHHHHHHcCCHhHHHHHHHc
Confidence            456666651 33444 8899999999999999999999999998  777 88888 999999999999999999999999


Q ss_pred             CCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccch-hhhcccCCCCCcHHHHHHhhccccccceeeecccc-cccc
Q 041107           78 CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVR-NLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWK-IAKA  155 (374)
Q Consensus        78 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l-~~g~  155 (374)
                      ++++ +.+|..|+||||+|+..|+.+++++|+    +.+ .++|.+|.+|+||||+|+..|+.+.++.|     + +.|+
T Consensus       130 g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L-----l~~~ga  199 (228)
T 2dzn_A          130 GASV-RIKDKFNQIPLHRAASVGSLKLIELLC----GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL-----VEKYGA  199 (228)
T ss_dssp             TCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH----TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHHCC
T ss_pred             CCCc-cccCCCCCCHHHHHHHcCCHHHHHHHH----hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHH-----HHhcCC
Confidence            9996 889999999999999999999999998    677 89999999999999999999987777766     6 8899


Q ss_pred             ccccccCCCCChHHHHHh
Q 041107          156 HFQATNKQNISAEHIYRY  173 (374)
Q Consensus       156 ~~~~~n~~g~t~l~~a~~  173 (374)
                      +++.+|.+|+||+++|.+
T Consensus       200 ~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          200 EYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             CSCCBCTTSCBGGGGCSS
T ss_pred             CCCccCCCCCcHHHHHHH
Confidence            999999999999999943

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.1e-28  Score=208.32  Aligned_cols=158  Identities=15%  Similarity=0.036  Sum_probs=135.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS   99 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~   99 (374)
                      +.||||.|+..|+.++++.|++.+++..+.+|. .|+||||+|+..|+.+++++|+++++++ +..|..|+||||+|+.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence            578999999999999999999988885588888 9999999999999999999999999886 78889999999999999


Q ss_pred             ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCc-c
Q 041107          100 FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPD-L  178 (374)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~-~  178 (374)
                      ++.+++++|+    +.+.+++.+|.+|+||||+|+..|+.+.++.|     ++.|++++.+|.+|+||+++|...+.. .
T Consensus        80 ~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A           80 GYTDIVGLLL----ERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL-----LARGADLTTEADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             TCHHHHHHHH----TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCccccCCCCCCHHHHHHHhCcHHH
Confidence            9999999998    77889999999999999999999887777665     788999999999999999998765544 5


Q ss_pred             HHHHHHHHHh
Q 041107          179 EQEIQELSKA  188 (374)
Q Consensus       179 ~~~i~~~l~~  188 (374)
                      ++.+++...+
T Consensus       151 ~~~L~~~~~~  160 (172)
T 3v30_A          151 QQVIENHILK  160 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5666665554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=1e-28  Score=224.13  Aligned_cols=178  Identities=18%  Similarity=0.084  Sum_probs=133.1

Q ss_pred             hHHHHhhCCc-------cccccCCCCCcHHHHHHHcCCH-HHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHH
Q 041107            2 PLLLLDKKKS-------LTRERDRHGWTPLHYAVYLDRC-FISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE   73 (374)
Q Consensus         2 ~~~lL~~~~~-------~~~~~d~~g~TpLh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~   73 (374)
                      ++.||+....       .++..|..|.||||.|+..++. ++++.|++.|+++ +.+|. +|+||||+|+..|+.+++++
T Consensus        27 v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~-~G~TpLh~A~~~g~~~~v~~  104 (269)
T 4b93_B           27 VRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ-DGSSPLHVAALHGRADLIPL  104 (269)
T ss_dssp             HHHHHTCC----------------------------------------CCCCT-TCCCT-TSCCHHHHHHHTTCTTHHHH
T ss_pred             HHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHH
Confidence            5677765543       3567788999999999998875 5889999999999 99999 99999999999999999999


Q ss_pred             HHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccc
Q 041107           74 IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIA  153 (374)
Q Consensus        74 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~  153 (374)
                      |++.++++ ...+.+|.||+|.|+..++.+++++|+    +.|.++|.+|.+|+||||+|++.|+.+.++.|     ++.
T Consensus       105 Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll----~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L-----l~~  174 (269)
T 4b93_B          105 LLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLL----DSNAKPNKKDLSGNTPLIYACSGGHHELVALL-----LQH  174 (269)
T ss_dssp             HHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHH-----HHT
T ss_pred             HHhcCCCc-CccCCCCCCccccccccChHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH-----HHC
Confidence            99999996 888999999999999999999999998    78899999999999999999999998777766     889


Q ss_pred             ccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          154 KAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       154 g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      |+++|..|..|.||||+|...+..   +++++|.+.|+...
T Consensus       175 gadvn~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          175 GASINASNNKGNTALHEAVIEKHV---FVVELLLLHGASVQ  212 (269)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCH---HHHHHHHHTTCCSC
T ss_pred             CCCCCccccCCCcHHHHHHHcCCH---HHHHHHHHCCCCCC
Confidence            999999999999999999888876   78888888776543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.2e-28  Score=205.61  Aligned_cols=158  Identities=18%  Similarity=0.138  Sum_probs=143.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 041107           18 RHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAM   97 (374)
Q Consensus        18 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   97 (374)
                      +...||||.|+..|+.+++++|++++.++ +.+|. .|+||||+|+. |+.+++++|++.++++ +.+|..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNG-FGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCT-TSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCc-cCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            35679999999999999999999999999 88998 99999999999 9999999999999986 888999999999999


Q ss_pred             HhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc-cccccCCCCChHHHHHhCCC
Q 041107           98 VSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH-FQATNKQNISAEHIYRYGFP  176 (374)
Q Consensus        98 ~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~-~~~~n~~g~t~l~~a~~~~~  176 (374)
                      .+++.+++++|+    +.|.++|.+|.+|+||||+|++.|+.+.++.|     ++.|++ ++..|..|+||+++|...+.
T Consensus        79 ~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           79 RAGFLDTLQTLL----EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL-----VKHTASNVGHRNHKGDTACDLARLYGR  149 (162)
T ss_dssp             HHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence            999999999999    77899999999999999999999987777666     788887 69999999999999988877


Q ss_pred             ccHHHHHHHHHhcCC
Q 041107          177 DLEQEIQELSKADGS  191 (374)
Q Consensus       177 ~~~~~i~~~l~~~~~  191 (374)
                      .   ++.+++.+.|+
T Consensus       150 ~---~~~~~Ll~~GA  161 (162)
T 1ihb_A          150 N---EVVSLMQANGA  161 (162)
T ss_dssp             H---HHHHHHHHTC-
T ss_pred             H---HHHHHHHHhCC
Confidence            6   88888888765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=3e-28  Score=205.56  Aligned_cols=155  Identities=20%  Similarity=0.188  Sum_probs=139.0

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++..+..++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        18 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   95 (172)
T 3v30_A           18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAK-ERESALSLASTGGYTDIVGLLLERDVDI   95 (172)
T ss_dssp             HHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcc-cCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            578888888889999999999999999999999999999999999 89999 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                       +..|..|+||||+|+.+++.+++++|+    +.|++++.+|.+|+||||+|+..|+.+.++.|     ++.+++....|
T Consensus        96 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L-----~~~~~~~~~~~  165 (172)
T 3v30_A           96 -NIYDWNGGTPLLYAVRGNHVKCVEALL----ARGADLTTEADSGYTPMDLAVALGYRKVQQVI-----ENHILKLFQSN  165 (172)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HHHHHHHSCC-
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHHHhCcHHHHHHH-----HHHHHHHhccc
Confidence             888999999999999999999999999    77899999999999999999999987777766     89999999999


Q ss_pred             CCCCChH
Q 041107          162 KQNISAE  168 (374)
Q Consensus       162 ~~g~t~l  168 (374)
                      ..|.||.
T Consensus       166 ~~~~~pe  172 (172)
T 3v30_A          166 LVPADPE  172 (172)
T ss_dssp             -------
T ss_pred             CCCCCCC
Confidence            9998883

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=1.2e-28  Score=224.57  Aligned_cols=162  Identities=16%  Similarity=0.133  Sum_probs=147.8

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCC-cccccccCCCCchHHHHHH-----HcCCHHHHHHHHHhCCCccccc
Q 041107           12 LTRERDRHGWTPLHYAVYLDRCFISKCLLEADK-SAALISDEDRKMTALHLAA-----GRGDVWMVQEIIDHCPECCEVV   85 (374)
Q Consensus        12 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~-~~~~~~d~~~g~tpLh~Aa-----~~g~~~~v~~Ll~~~~~~~~~~   85 (374)
                      .+|.+|.+|+||||+|+..|+.+++++|++.|+ ++ +.+|. .|+||||+|+     ..|+.++++.|++.+... ...
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~-~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~  179 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNR-AGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKA  179 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCT-TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCC
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCC-CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-ccc
Confidence            478899999999999999999999999999998 65 89999 9999999999     678999999999999775 778


Q ss_pred             cCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccc-cccccccccCCC
Q 041107           86 DDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKI-AKAHFQATNKQN  164 (374)
Q Consensus        86 d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~-~g~~~~~~n~~g  164 (374)
                      |..|+||||+|+.+|+.+++++|+    +.|+++|.+|.+|+||||+|+..|+.+.++.|     ++ .|++++.+|.+|
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll----~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L-----l~~~gad~~~~d~~g  250 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALL----ACEADVNVQDDDGSTALMCACEHGHKEIAGLL-----LAVPSCDISLTDRDG  250 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HTSTTCCTTCCCTTS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH-----HhcCCCCCcCcCCCC
Confidence            899999999999999999999999    78999999999999999999999998777766     56 899999999999


Q ss_pred             CChHHHHHhCCCccHHHHHHHHHh
Q 041107          165 ISAEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       165 ~t~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      +||+++|...+..   ++.++|.+
T Consensus       251 ~TpL~~A~~~g~~---~iv~~Ll~  271 (276)
T 4hbd_A          251 STALMVALDAGQS---EIASMLYS  271 (276)
T ss_dssp             CCHHHHHHHHTCH---HHHHHHHH
T ss_pred             CCHHHHHHHcCCH---HHHHHHHh
Confidence            9999999887776   66666655

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=2.2e-28  Score=222.13  Aligned_cols=171  Identities=21%  Similarity=0.155  Sum_probs=150.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcc--cccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCC
Q 041107           13 TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSA--ALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGW   90 (374)
Q Consensus        13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~   90 (374)
                      ++.+|.+|+||||+|++.|+.+++++|++++++.  .+.+|. .|+||||+|+..|+.+++++|+++|+++ +.+|..|+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~   79 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGH   79 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCC
Confidence            5678999999999999999999999999988772  378888 9999999999999999999999999996 88899999


Q ss_pred             cHHHHHHHhccHHHHHhHHhhcc-------------------------------------------cchhhhcccCCCCC
Q 041107           91 NVLHFAMVSFYARDLKHLVDKYP-------------------------------------------AVRNLIFKKDVKGN  127 (374)
Q Consensus        91 t~Lh~A~~~~~~~~~~~Ll~~~~-------------------------------------------~~~~~~n~~d~~G~  127 (374)
                      ||||+|+..++.+++++|++...                                           ..+.+++.+|.+|+
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            99999999999999999985321                                           12345888999999


Q ss_pred             cHHHHHHhhccccccceeeeccccccccccccccCC-CCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          128 TPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQ-NISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       128 T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~-g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      ||||+|+..|+...++.|     ++.|++++..+.. |+||+|+|...+..   +++++|.+.|+..
T Consensus       160 t~L~~A~~~g~~~~v~~L-----l~~g~~~~~~~~~~g~tpL~~A~~~~~~---~~v~~Ll~~gad~  218 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLL-----RDAGADLNKPEPTCGRTPLHLAVEAQAA---SVLELLLKAGADP  218 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHH-----HHHTCCTTCCCTTTCCCHHHHHHHTTCH---HHHHHHHHTTCCT
T ss_pred             CHHHHHHHcCCHHHHHHH-----HHcCCCCCCCCCCCCcCHHHHHHHcCCH---HHHHHHHHcCCCC
Confidence            999999999987777766     8899999999865 99999999887776   7888888876654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=6e-28  Score=214.05  Aligned_cols=163  Identities=18%  Similarity=0.184  Sum_probs=147.8

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcC-CcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEAD-KSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE   80 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   80 (374)
                      ++.|+ ..+..++.+|..|.||||+|+..|+.+++++|++++ .++ +..+. .|+||||+|+..|+.+++++|++.+++
T Consensus        60 v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~  136 (237)
T 3b7b_A           60 VKYLI-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-NCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSD  136 (237)
T ss_dssp             HHHHH-TTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-ccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            34444 556778999999999999999999999999999998 555 88888 999999999999999999999999999


Q ss_pred             ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107           81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT  160 (374)
Q Consensus        81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~  160 (374)
                      + +..|..|+||||+|+..|+.+++++|+    +.|.+++.+|.+|+||||+|++.|+.+.+..|     ++.|++++.+
T Consensus       137 ~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~gad~~~~  206 (237)
T 3b7b_A          137 I-NIRDNEENICLHWAAFSGCVDIAEILL----AAKCDLHAVNIHGDSPLHIAARENRYDCVVLF-----LSRDSDVTLK  206 (237)
T ss_dssp             T-TCCCTTSCCHHHHHHHHCCHHHHHHHH----TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH-----HTTTCCTTCC
T ss_pred             C-CccCCCCCCHHHHHHHCCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHH-----HHcCCCCCcc
Confidence            6 888999999999999999999999999    78899999999999999999999987777665     8899999999


Q ss_pred             cCCCCChHHHHHhCCCc
Q 041107          161 NKQNISAEHIYRYGFPD  177 (374)
Q Consensus       161 n~~g~t~l~~a~~~~~~  177 (374)
                      |.+|+||+++|...++.
T Consensus       207 d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          207 NKEGETPLQCASLNSQV  223 (237)
T ss_dssp             CTTSCCHHHHSCTTCHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999766543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=9.7e-29  Score=219.45  Aligned_cols=171  Identities=18%  Similarity=0.102  Sum_probs=148.8

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCC----cccccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADK----SAALISDEDRKMTALHLAAGRGDVWMVQEIIDH   77 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~----~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~   77 (374)
                      ++.|++ .+..++.+|.+|+||||+|+..|+.+++++|+++++    ++ +.+|. .|+||||+|+..|+.+++++|++.
T Consensus        62 v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~  138 (241)
T 1k1a_A           62 VRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNY-DGLTALHVAVNTECQETVQLLLER  138 (241)
T ss_dssp             HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCc-CCCcHHHHHHHcCCHHHHHHHHHc
Confidence            344554 567889999999999999999999999999999887    66 77888 999999999999999999999999


Q ss_pred             CCCcccccc-CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107           78 CPECCEVVD-DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH  156 (374)
Q Consensus        78 ~~~~~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~  156 (374)
                      ++++ +..| ..|+||||+|+.+++.+++++|+    +.|.++|.+|.+|+||||+|+..|+.+.++.|     ++.|++
T Consensus       139 g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~  208 (241)
T 1k1a_A          139 GADI-DAVDIKSGRSPLIHAVENNSLSMVQLLL----QHGANVNAQMYSGSSALHSASGRGLLPLVRTL-----VRSGAD  208 (241)
T ss_dssp             TCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH-----HHTTCC
T ss_pred             CCCc-ccccccCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HhcCCC
Confidence            9997 5666 89999999999999999999999    77899999999999999999999987777766     889999


Q ss_pred             cccccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107          157 FQATNKQNISAEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       157 ~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      ++.+|.+|+||+++|...+..   ++++.+.+
T Consensus       209 ~~~~~~~g~tpl~~A~~~~~~---~i~~~l~~  237 (241)
T 1k1a_A          209 SSLKNCHNDTPLMVARSRRVI---DILRGKAT  237 (241)
T ss_dssp             TTCCCTTSCCTTTTCSSHHHH---HHHTC---
T ss_pred             CCCcCCCCCCHHHHHHhcCcH---HHHhhhcc
Confidence            999999999999999654333   55554444

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2.1e-28  Score=208.04  Aligned_cols=165  Identities=14%  Similarity=0.096  Sum_probs=144.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107           17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA   96 (374)
Q Consensus        17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   96 (374)
                      +.++.+|||.|+..|+.++++.|++.+....+.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA   79 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            357899999999999999999999985544488998 9999999999999999999999999996 88899999999999


Q ss_pred             HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCC
Q 041107           97 MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFP  176 (374)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~  176 (374)
                      +.+++.+++++|+    +.|.++|.+|.+|+||||+|+..|+.+.++.|     ++.|++++..|.+|+||+++|...+.
T Consensus        80 ~~~~~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~tpl~~A~~~~~  150 (179)
T 3f6q_A           80 ASHGHRDIVQKLL----QYKADINAVNEHGNVPLHYACFWGQDQVAEDL-----VANGALVSICNKYGEMPVDKAKAPLR  150 (179)
T ss_dssp             HHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCSSBCCTTSCCGGGGSCHHHH
T ss_pred             HHcCCHHHHHHHH----HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCcchhccCCCCcHHHHHHHHH
Confidence            9999999999999    77899999999999999999999987777666     88999999999999999999965444


Q ss_pred             ccHHHHHHHHHhcCCCCCC
Q 041107          177 DLEQEIQELSKADGSGQYP  195 (374)
Q Consensus       177 ~~~~~i~~~l~~~~~~~~~  195 (374)
                      .   ++.+.+.+.++....
T Consensus       151 ~---~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          151 E---LLRERAEKMGQNLNR  166 (179)
T ss_dssp             H---HHHHHHHHTTCCCSC
T ss_pred             H---HHHHHHHHhhcCccc
Confidence            3   888888887776643

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2.4e-28  Score=202.30  Aligned_cols=151  Identities=17%  Similarity=0.014  Sum_probs=137.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS   99 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~   99 (374)
                      +.||||.|++.|+.+++++|++++++. + .+. .|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            468999999999999999999999877 4 577 8999999999999999999999999996 88899999999999999


Q ss_pred             ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccH
Q 041107          100 FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLE  179 (374)
Q Consensus       100 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~  179 (374)
                      ++.+++++|+    +.|.++|.+|.+|+||||+|+..|+.+.++.|     ++.|++++.+|..|+||+++|...+..  
T Consensus        78 ~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~~A~~~~~~--  146 (153)
T 1awc_B           78 GHANIVEVLL----KHGADVNAKDMLKMTALHWATEHNHQEVVELL-----IKYGADVHTQSKFCKTAFDISIDNGNE--  146 (153)
T ss_dssp             TCHHHHHHHH----TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH--
T ss_pred             ChHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCccccCCCCCCHHHHHHHcCCH--
Confidence            9999999999    77899999999999999999999987777665     788999999999999999999887776  


Q ss_pred             HHHHHHH
Q 041107          180 QEIQELS  186 (374)
Q Consensus       180 ~~i~~~l  186 (374)
                       ++.++|
T Consensus       147 -~i~~~L  152 (153)
T 1awc_B          147 -DLAEIL  152 (153)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHHh
Confidence             555544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=1e-28  Score=222.33  Aligned_cols=169  Identities=19%  Similarity=0.096  Sum_probs=142.2

Q ss_pred             hCCccccccC----CCCCcHHHHHH---HcCCHHHHHHHhhcCCcc----------cccccCCCCchHHHHHHHcCCHHH
Q 041107            8 KKKSLTRERD----RHGWTPLHYAV---YLDRCFISKCLLEADKSA----------ALISDEDRKMTALHLAAGRGDVWM   70 (374)
Q Consensus         8 ~~~~~~~~~d----~~g~TpLh~Aa---~~g~~~~v~~Ll~~~~~~----------~~~~d~~~g~tpLh~Aa~~g~~~~   70 (374)
                      ..+..++..+    .+|+||||+|+   +.|+.+++++|++.+++.          ....|. .|+||||+|+..|+.++
T Consensus        30 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~  108 (260)
T 3jxi_A           30 THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY-RGQTALHIAIERRCKHY  108 (260)
T ss_dssp             HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE-ESBCHHHHHHHTTCHHH
T ss_pred             hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc-CCCCHHHHHHHcCCHHH
Confidence            3455666555    77999999999   779999999999987542          134455 89999999999999999


Q ss_pred             HHHHHHhCCCcccccc--------------CCCCcHHHHHHHhccHHHHHhHHhhccc---chhhhcccCCCCCcHHHHH
Q 041107           71 VQEIIDHCPECCEVVD--------------DRGWNVLHFAMVSFYARDLKHLVDKYPA---VRNLIFKKDVKGNTPFHVL  133 (374)
Q Consensus        71 v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~---~~~~~n~~d~~G~T~LH~A  133 (374)
                      +++|+++|+++ +..|              ..|+||||+|+.+|+.+++++|+    +   .|+++|.+|.+|+||||+|
T Consensus       109 v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll----~~~~~ga~~~~~d~~g~TpLh~A  183 (260)
T 3jxi_A          109 VELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT----ENGHKQADLRRQDSRGNTVLHAL  183 (260)
T ss_dssp             HHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH----HCSSCCCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH----hccccCCCCcccCCCCCcHHHHH
Confidence            99999999996 6666              68999999999999999999999    6   7899999999999999999


Q ss_pred             Hhhcc---------ccccceeeecccccccccc-------ccccCCCCChHHHHHhCCCccHHHHHHHHHhcC
Q 041107          134 AAVCR---------QSYDARYDIVPWKIAKAHF-------QATNKQNISAEHIYRYGFPDLEQEIQELSKADG  190 (374)
Q Consensus       134 ~~~g~---------~~~~~~l~L~~~l~~g~~~-------~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~  190 (374)
                      ++.|+         ...++.|     ++.|+++       +..|.+|+||+|+|...++.   +++++|.+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~v~~L-----l~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~---~~v~~Ll~~g  248 (260)
T 3jxi_A          184 VAIADNTRENTKFVTKMYDLL-----LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI---GIFQHIIRRE  248 (260)
T ss_dssp             HHHCCSSHHHHHHHHHHHHHH-----HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH---HHHHHHHHHH
T ss_pred             HHhccCchhHHHHHHHHHHHH-----HHhCcccccccchhhcccCCCCCHHHHHHHcCCH---HHHHHHHHhC
Confidence            98776         2344444     8899999       78999999999999888776   6666666643

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=4.3e-28  Score=229.20  Aligned_cols=173  Identities=14%  Similarity=0.085  Sum_probs=128.4

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccc--------------------------------
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALI--------------------------------   49 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~--------------------------------   49 (374)
                      ++.|++. +..++.+|..|+||||+|+..|+.+++++|++++++. +.                                
T Consensus        36 v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  113 (364)
T 3ljn_A           36 VRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM  113 (364)
T ss_dssp             HHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC
Confidence            4555654 5778889999999999999999999999999887755 22                                


Q ss_pred             --------------------ccCCCCchHHHHHHHcC--CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHh
Q 041107           50 --------------------SDEDRKMTALHLAAGRG--DVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKH  107 (374)
Q Consensus        50 --------------------~d~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~  107 (374)
                                          +|. .|.||||+|+..|  +.+++++|++.++++ +..|..|+||||+|+.+|+.+++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~  191 (364)
T 3ljn_A          114 PESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDL  191 (364)
T ss_dssp             HHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHH
Confidence                                555 6777777777777  777777777777775 6677777777777777777777777


Q ss_pred             HHhhcccchhh-----hcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHH
Q 041107          108 LVDKYPAVRNL-----IFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEI  182 (374)
Q Consensus       108 Ll~~~~~~~~~-----~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i  182 (374)
                      |+    +.+.+     +|.+|.+|+||||+|+..|+.+.++.|     ++.|++++..|.+|+||+++|...+..   ++
T Consensus       192 Ll----~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L-----l~~gad~~~~d~~g~tpL~~A~~~g~~---~~  259 (364)
T 3ljn_A          192 MM----DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF-----VEMGIDVNMEDNEHTVPLYLSVRAAMV---LL  259 (364)
T ss_dssp             HH----HHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHH-----HTTTCCTTCCCTTSCCHHHHHHHTCCH---HH
T ss_pred             HH----hcccccccccccccCCCCCcHHHHHHHcCCHHHHHHH-----HHcCCCCCCCCCCCCCHHHHHHHhChH---HH
Confidence            77    44444     777777778888888777776666554     677778888888888888877766655   55


Q ss_pred             HHHHHhcC
Q 041107          183 QELSKADG  190 (374)
Q Consensus       183 ~~~l~~~~  190 (374)
                      +++|.+.+
T Consensus       260 v~~Ll~~~  267 (364)
T 3ljn_A          260 TKELLQKT  267 (364)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHcC
Confidence            66555544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=219.32  Aligned_cols=174  Identities=17%  Similarity=0.023  Sum_probs=135.4

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++. +..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++++
T Consensus        75 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  151 (285)
T 3d9h_A           75 LRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASV  151 (285)
T ss_dssp             HHHHHHT-TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCHHHHHHHHHHCCCCC
Confidence            3444543 5667888888888888888888888888888888887 77777 8888888888888888888888888775


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                       . .+.+|+||||+|+..|+.+++++|+    +.+.+++.+|.+|+||||+|+..|+.+.++.|     ++.|++++. |
T Consensus       152 -~-~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~-~  219 (285)
T 3d9h_A          152 -Q-PESDLASPIHEAARRGHVECVNSLI----AYGGNIDHKISHLGTPLYLACENQQRACVKKL-----LESGADVNQ-G  219 (285)
T ss_dssp             -S-CSCTTSCHHHHHHHHTCHHHHHHHH----HTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH-----HHTTCCTTC-C
T ss_pred             -C-CCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH-----HHCCCCCCC-C
Confidence             2 3445888888888888888888887    67778888888888888888888876666655     677888884 7


Q ss_pred             CCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      ..|.||+|+|...+..   +++++|.+.++..
T Consensus       220 ~~g~t~L~~A~~~~~~---~~v~~Ll~~gad~  248 (285)
T 3d9h_A          220 KGQDSPLHAVVRTASE---ELACLLMDFGADT  248 (285)
T ss_dssp             BTTBCHHHHHHHTTCH---HHHHHHHHTTCCT
T ss_pred             CCCCCHHHHHHHcCCH---HHHHHHHHCCCCC
Confidence            8888888888777665   6777777766543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=1.3e-27  Score=211.35  Aligned_cols=164  Identities=18%  Similarity=0.115  Sum_probs=145.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhc-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc----ccccCCCCcHH
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLEA-DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC----EVVDDRGWNVL   93 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~g~t~L   93 (374)
                      .|+||||+|++.|+.++++.|++. +.++ +.+|. .|+||||+|+..|+.+++++|++.+++..    ...|..|+|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGA-MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCC-CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence            589999999999999999999997 8888 89999 99999999999999999999999998753    45677999999


Q ss_pred             HHHHHhccHHHHHhHHhhcccchhhhcccCC-------------CCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107           94 HFAMVSFYARDLKHLVDKYPAVRNLIFKKDV-------------KGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT  160 (374)
Q Consensus        94 h~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~-------------~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~  160 (374)
                      |+|+.+|+.+++++|+    +.|.+++.+|.             +|+||||+|+..|+.+.++.|     ++.|++++.+
T Consensus        80 ~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~  150 (232)
T 2rfa_A           80 HIAVINQNVNLVRALL----ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL-----IEHGADIRAQ  150 (232)
T ss_dssp             HHHHHTTCHHHHHHHH----HTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH-----HHTTCCTTCC
T ss_pred             HHHHHcCCHHHHHHHH----hCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCC
Confidence            9999999999999999    66778877765             899999999999987777766     7889999999


Q ss_pred             cCCCCChHHHHHhCCCc-cHHHHHHHHHhcCCCC
Q 041107          161 NKQNISAEHIYRYGFPD-LEQEIQELSKADGSGQ  193 (374)
Q Consensus       161 n~~g~t~l~~a~~~~~~-~~~~i~~~l~~~~~~~  193 (374)
                      |.+|+||+|+|...+.. .+..+++++.+.++..
T Consensus       151 d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             CCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            99999999999876655 3456668888877754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=1.6e-27  Score=230.63  Aligned_cols=157  Identities=19%  Similarity=0.149  Sum_probs=108.6

Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 041107            9 KKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR   88 (374)
Q Consensus         9 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   88 (374)
                      .+..++.+|..|.||||+|+..|+.+++++|+++++++ +.++. .|+||||+|+..|+.+++++|++++.++ +..|..
T Consensus       234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~  310 (437)
T 1n11_A          234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRM  310 (437)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSS
T ss_pred             cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCC
Confidence            34456666666777777777777777777777766666 66666 6777777777777777777777776664 566677


Q ss_pred             CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChH
Q 041107           89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAE  168 (374)
Q Consensus        89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l  168 (374)
                      |+||||+|+.+|+.+++++|+    +.|+++|.+|..|+||||+|++.|+.++++.|     ++.|++++.+|.+|+||+
T Consensus       311 g~t~L~~A~~~g~~~~v~~Ll----~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~L-----l~~ga~~~~~~~~g~t~l  381 (437)
T 1n11_A          311 GYTPLHVASHYGNIKLVKFLL----QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-----LKNGASPNEVSSDGTTPL  381 (437)
T ss_dssp             CCCHHHHHHHSSCSHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCSCCCCSSSCCHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHH----hcCCCCCCCCCCCCCHHHHHHHCChHHHHHHH-----HHCcCCCCCCCCCCCCHH
Confidence            777777777777777777776    56667777777777777777777766555544     666777777777777777


Q ss_pred             HHHHhCCCc
Q 041107          169 HIYRYGFPD  177 (374)
Q Consensus       169 ~~a~~~~~~  177 (374)
                      ++|.+.+..
T Consensus       382 ~~A~~~g~~  390 (437)
T 1n11_A          382 AIAKRLGYI  390 (437)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHcCcH
Confidence            777666655

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=4.7e-27  Score=213.22  Aligned_cols=176  Identities=15%  Similarity=0.017  Sum_probs=137.8

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++ .+..++.+|.+|.||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++++
T Consensus        55 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  131 (285)
T 1wdy_A           55 VELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDF-YGFTAFMEAAVYGKVKALKFLYKRGANV  131 (285)
T ss_dssp             HHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCc-ccCCHHHHHHHhCCHHHHHHHHHhCCCc
Confidence            344444 46678888889999999999999999999999998888 88888 8999999999999999999999988875


Q ss_pred             cccc----------cCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcc----ccccceeee
Q 041107           82 CEVV----------DDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCR----QSYDARYDI  147 (374)
Q Consensus        82 ~~~~----------d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~----~~~~~~l~L  147 (374)
                       +..          +..|.||||.|+..++.+++++|++   ..+.+++.+|..|+||||+|+..++    ...++.|  
T Consensus       132 -~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~L--  205 (285)
T 1wdy_A          132 -NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL--  205 (285)
T ss_dssp             -TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH---TSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHH--
T ss_pred             -ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH---hcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHH--
Confidence             443          6788899999999999999988873   2377788888888888888888776    3333333  


Q ss_pred             ccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh-cCCC
Q 041107          148 VPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA-DGSG  192 (374)
Q Consensus       148 ~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~-~~~~  192 (374)
                         ++.|++++.+|..|+||+|+|...+..   ++++++.+ .+..
T Consensus       206 ---l~~g~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~g~~  245 (285)
T 1wdy_A          206 ---LDHGADVNVRGERGKTPLILAVEKKHL---GLVQRLLEQEHIE  245 (285)
T ss_dssp             ---HHTTCCSSCCCTTSCCHHHHHHHTTCH---HHHHHHHHSSSCC
T ss_pred             ---HHcCCCCCCcCCCCCcHHHHHHHcCCH---HHHHHHHhccCCC
Confidence               677888888888888888888776665   66666665 4443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=2.6e-27  Score=221.46  Aligned_cols=184  Identities=21%  Similarity=0.159  Sum_probs=138.9

Q ss_pred             ChHHHHhhCCccccccCC-CCCcHHHHHHHcCCHHHHHHHhhcCCcc--------------------------------c
Q 041107            1 VPLLLLDKKKSLTRERDR-HGWTPLHYAVYLDRCFISKCLLEADKSA--------------------------------A   47 (374)
Q Consensus         1 i~~~lL~~~~~~~~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~--------------------------------~   47 (374)
                      +|+.||+. +.++|.+|. .|+||||+|++.|+.++|++|+++|+++                                .
T Consensus        40 ~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (337)
T 4g8k_A           40 LVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV  118 (337)
T ss_dssp             HHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchh
Confidence            36677766 577888775 5999999999999999999999988765                                1


Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc---------ccccCCCCcHHHHHHHhccHHHHHhHHhhc------
Q 041107           48 LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC---------EVVDDRGWNVLHFAMVSFYARDLKHLVDKY------  112 (374)
Q Consensus        48 ~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~------  112 (374)
                      +.+|. .|+||||+|+..|+.+++++|+++++++.         ...+..|+||||+|+++|+.+++++|+++.      
T Consensus       119 ~~~d~-~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~  197 (337)
T 4g8k_A          119 NECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA  197 (337)
T ss_dssp             TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC
T ss_pred             hhhcc-CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc
Confidence            34566 89999999999999999999999988752         234567899999999999999999988521      


Q ss_pred             ----------------------------ccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCC
Q 041107          113 ----------------------------PAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQN  164 (374)
Q Consensus       113 ----------------------------~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g  164 (374)
                                                  .+.|+++|.+|.+|+||||+|+..|+...+..| +   ...|+++|.+|.+|
T Consensus       198 ~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~L-l---~~~~~~vn~~d~~G  273 (337)
T 4g8k_A          198 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL-L---EQEHIEINDTDSDG  273 (337)
T ss_dssp             CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH-H---TSTTCCTTCBCTTS
T ss_pred             cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHH-H---HhcCCcccCcCCCC
Confidence                                        123455667777777777777777766555555 3   44577777777777


Q ss_pred             CChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          165 ISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       165 ~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      +||||+|...+..   +++++|.+.|+..
T Consensus       274 ~TpL~~A~~~g~~---~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          274 KTALLLAVELKLK---KIAELLCKRGAST  299 (337)
T ss_dssp             CBHHHHHHHTTCH---HHHHHHHTTSCSS
T ss_pred             CCHHHHHHHcCCH---HHHHHHHHCCCCC
Confidence            7777777766665   6677777766543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=4.5e-27  Score=215.06  Aligned_cols=166  Identities=13%  Similarity=0.036  Sum_probs=150.4

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc
Q 041107           12 LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWN   91 (374)
Q Consensus        12 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t   91 (374)
                      ..+.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|+|
T Consensus        51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t  127 (285)
T 3d9h_A           51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITA-DHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHT  127 (285)
T ss_dssp             TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT-TCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCC
T ss_pred             cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCC
Confidence            35778999999999999999999999999999998 99999 9999999999999999999999999996 889999999


Q ss_pred             HHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHH
Q 041107           92 VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY  171 (374)
Q Consensus        92 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a  171 (374)
                      |||+|+..++.+++++|+    +.+.+++.. .+|+||||+|+..|+.+.++.|     ++.|++++..|.+|.||+++|
T Consensus       128 ~L~~A~~~~~~~~v~~Ll----~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L-----l~~g~~~~~~d~~g~t~L~~A  197 (285)
T 3d9h_A          128 PLFNACVSGSWDCVNLLL----QHGASVQPE-SDLASPIHEAARRGHVECVNSL-----IAYGGNIDHKISHLGTPLYLA  197 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHH----HTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHH-----HHTTCCTTCCBTTTBCHHHHH
T ss_pred             HHHHHHHcCHHHHHHHHH----HCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCcCCCCCCHHHHH
Confidence            999999999999999998    667777754 4599999999999987777766     789999999999999999999


Q ss_pred             HhCCCccHHHHHHHHHhcCCCC
Q 041107          172 RYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       172 ~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      ...+..   +++++|.+.++..
T Consensus       198 ~~~~~~---~~v~~Ll~~ga~~  216 (285)
T 3d9h_A          198 CENQQR---ACVKKLLESGADV  216 (285)
T ss_dssp             HHTTCH---HHHHHHHHTTCCT
T ss_pred             HHcCcH---HHHHHHHHCCCCC
Confidence            888776   7888888876654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=209.56  Aligned_cols=179  Identities=18%  Similarity=0.159  Sum_probs=154.9

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++. +..++.+|..|.||||+|+..|+.+++++|++++++.....+. .|.||||+|+..|+.+++++|++.++++
T Consensus        25 ~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~v~~Ll~~g~~~  102 (240)
T 3eu9_A           25 CRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-LNSTPLHWATRQGHLSMVVQLMKYGADP  102 (240)
T ss_dssp             HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT-TTBCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC-cCCChhHHHHHcCCHHHHHHHHHcCCCC
Confidence            4555654 5778999999999999999999999999999999998445555 7999999999999999999999999986


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                       +..|..|+||||.|+..++.+++++|+    +.+.+++.+|.+|+||||+|+..++......+ |   ++.|++++..+
T Consensus       103 -~~~~~~g~t~l~~A~~~~~~~~~~~Ll----~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~-L---~~~~~~~~~~~  173 (240)
T 3eu9_A          103 -SLIDGEGCSCIHLAAQFGHTSIVAYLI----AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL-L---LTFNVSVNLGD  173 (240)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH-H---HHTTCCTTCCC
T ss_pred             -cccCCCCCCHHHHHHHcCHHHHHHHHH----hcCCCccccCCCCCcHHHHHHHhCChHHHHHH-H---HhcCCCcchhh
Confidence             788999999999999999999999998    77889999999999999999987764444444 5   88899999999


Q ss_pred             C-CCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          162 K-QNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       162 ~-~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      . .|.||+|+|...+..   ++++++.+.++...
T Consensus       174 ~~~g~t~L~~A~~~~~~---~~v~~Ll~~g~~~~  204 (240)
T 3eu9_A          174 KYHKNTALHWAVLAGNT---TVISLLLEAGANVD  204 (240)
T ss_dssp             TTTCCCHHHHHHHHTCH---HHHHHHHHHTCCTT
T ss_pred             ccCCCcHHHHHHHcCCH---HHHHHHHHcCCCCC
Confidence            7 999999999877766   77777777766554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=1.7e-27  Score=217.89  Aligned_cols=173  Identities=18%  Similarity=0.064  Sum_probs=104.5

Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 041107            4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCE   83 (374)
Q Consensus         4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~   83 (374)
                      ++|...  .++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+   +|+||||+|+..|+.+++++|+++|+++ +
T Consensus        17 ~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~   89 (285)
T 3kea_A           17 SFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL---ENEFPLHQAATLEDTKIVKILLFSGLDD-S   89 (285)
T ss_dssp             HHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCT-T
T ss_pred             HHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCC-C
Confidence            344443  35666777777777777777777777777766665 333   3566777776666666777666666664 5


Q ss_pred             cccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCC-CcHHHHHHhhcccccccee-----------------
Q 041107           84 VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKG-NTPFHVLAAVCRQSYDARY-----------------  145 (374)
Q Consensus        84 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G-~T~LH~A~~~g~~~~~~~l-----------------  145 (374)
                      .+|..|+||||+|+.+|+.+++++|+    +.|++++.+|.+| +||||+|+..|+.+.++.|                 
T Consensus        90 ~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L  165 (285)
T 3kea_A           90 QFDDKGNTALYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCI  165 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHH
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHH
Confidence            56666666666666666666666666    4566666666666 5666655555543333322                 


Q ss_pred             -------------eeccccccccccccccCCCCCh-HHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          146 -------------DIVPWKIAKAHFQATNKQNISA-EHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       146 -------------~L~~~l~~g~~~~~~n~~g~t~-l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                                   .|   ++.|++++.+|..|+|| +|+|...+..   +++++|.+.|+..
T Consensus       166 ~~A~~~g~~~~v~~L---l~~gad~n~~~~~g~t~~L~~A~~~~~~---~~v~~Ll~~gad~  221 (285)
T 3kea_A          166 HITIKNGHVDMMILL---LDYMTSTNTNNSLLFIPDIKLAIDNKDI---EMLQALFKYDINI  221 (285)
T ss_dssp             HHHHHTTCHHHHHHH---HHHHHHTCTTCCCBCCTTHHHHHHHTCH---HHHHHHTTSCBCS
T ss_pred             HHHHHcChHHHHHHH---HHcCCCCCcccCCCCChHHHHHHHcCCH---HHHHHHHHcCCCC
Confidence                         01   45556666666666665 6666554444   5555555554443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=1.1e-26  Score=224.82  Aligned_cols=169  Identities=21%  Similarity=0.200  Sum_probs=123.2

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG   89 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g   89 (374)
                      +..++..+.+|+||||+|+..|+.++++.|+++++++ +.++. .|.||||+|+..|+.+++++|++.+++. +..|..|
T Consensus       202 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g  278 (437)
T 1n11_A          202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESV-QGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSG  278 (437)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTC
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCC
Confidence            3445556666666666666666666666666666666 66666 7777777777777777777777777764 6667777


Q ss_pred             CcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHH
Q 041107           90 WNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEH  169 (374)
Q Consensus        90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~  169 (374)
                      +||||+|+..++.+++++|+    +.|.++|.+|..|+||||+|+..|+.+.++.|     ++.|+++|.+|..|+||+|
T Consensus       279 ~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L-----l~~gad~n~~~~~g~t~L~  349 (437)
T 1n11_A          279 LTPLHLVAQEGHVPVADVLI----KHGVMVDATTRMGYTPLHVASHYGNIKLVKFL-----LQHQADVNAKTKLGYSPLH  349 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH----HHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHH-----HHTTCCTTCCCTTSCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHH----hCCccCCCCCCCCCCHHHHHHHcCcHHHHHHH-----HhcCCCCCCCCCCCCCHHH
Confidence            77777777777777777777    66777888888888888888888776666655     6778888888888888888


Q ss_pred             HHHhCCCccHHHHHHHHHhcCCCC
Q 041107          170 IYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       170 ~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      +|...++.   +++++|.+.|+..
T Consensus       350 ~A~~~g~~---~iv~~Ll~~ga~~  370 (437)
T 1n11_A          350 QAAQQGHT---DIVTLLLKNGASP  370 (437)
T ss_dssp             HHHHTTCH---HHHHHHHHTTCCS
T ss_pred             HHHHCChH---HHHHHHHHCcCCC
Confidence            88777665   7777777766654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.94  E-value=3.3e-27  Score=224.20  Aligned_cols=173  Identities=18%  Similarity=0.115  Sum_probs=141.9

Q ss_pred             hhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC---CCccc
Q 041107            7 DKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC---PECCE   83 (374)
Q Consensus         7 ~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~---~~~~~   83 (374)
                      ...+.++|.+|.+|+||||+|+..|+.++|++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.+   .++ +
T Consensus       153 l~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~  229 (373)
T 2fo1_E          153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDI-E  229 (373)
T ss_dssp             HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-S
T ss_pred             HhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCC-CCCCHHHHHHHCCCHHHHHHHHhcCccccCh-h
Confidence            3667889999999999999999999999999999999998 88888 9999999999999999999999877   454 6


Q ss_pred             cccCCCCcHHHHHHHhc---cHHHHHhHHhhcccchhhhcc--------cCCCCCcHHHHHHhhccccccceeeeccccc
Q 041107           84 VVDDRGWNVLHFAMVSF---YARDLKHLVDKYPAVRNLIFK--------KDVKGNTPFHVLAAVCRQSYDARYDIVPWKI  152 (374)
Q Consensus        84 ~~d~~g~t~Lh~A~~~~---~~~~~~~Ll~~~~~~~~~~n~--------~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~  152 (374)
                      ..|..|+||||+|+..+   +.+++++|+    +.|.+++.        +|.+|+||||+|+..|+.+.++.|     ++
T Consensus       230 ~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll----~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L-----l~  300 (373)
T 2fo1_E          230 ELDRNGMTALMIVAHNEGRDQVASAKLLV----EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL-----VG  300 (373)
T ss_dssp             CCCTTSCCHHHHHHHSCSTTHHHHHHHHH----HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHH-----HH
T ss_pred             hcCCCCCCHHHHHHHhCCcchHHHHHHHH----HCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHH-----HH
Confidence            77888889999888887   788888888    55666554        677888888888888887777655     44


Q ss_pred             c-ccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          153 A-KAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       153 ~-g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      . |++++.+|.+|+||+|+|...+..   +++++|.+.|+...
T Consensus       301 ~~~~~~n~~d~~g~TpL~~A~~~g~~---~iv~~Ll~~gad~~  340 (373)
T 2fo1_E          301 EKGSNKDKQDEDGKTPIMLAAQEGRI---EVVMYLIQQGASVE  340 (373)
T ss_dssp             HSCCCTTCCCTTCCCHHHHHHHHTCH---HHHHHHHHTTCCSS
T ss_pred             hcCCCccCcCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCcc
Confidence            4 488888888888888888777665   67777777666543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.94  E-value=2.5e-27  Score=225.07  Aligned_cols=175  Identities=17%  Similarity=0.109  Sum_probs=155.5

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcC---CcccccccCCCCchHHHHHHHcC---CHHHHHHHH
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEAD---KSAALISDEDRKMTALHLAAGRG---DVWMVQEII   75 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~---~~~~~~~d~~~g~tpLh~Aa~~g---~~~~v~~Ll   75 (374)
                      ++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|++++   .++ +..|. .|+||||+|+..|   +.+++++|+
T Consensus       182 v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll  258 (373)
T 2fo1_E          182 VAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDR-NGMTALMIVAHNEGRDQVASAKLLV  258 (373)
T ss_dssp             HHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCT-TSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             HHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCC-CCCCHHHHHHHhCCcchHHHHHHHH
Confidence            444554 57789999999999999999999999999999987   677 88898 9999999999998   899999999


Q ss_pred             HhCCCccc-------cccCCCCcHHHHHHHhccHHHHHhHHhhcccch-hhhcccCCCCCcHHHHHHhhccccccceeee
Q 041107           76 DHCPECCE-------VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVR-NLIFKKDVKGNTPFHVLAAVCRQSYDARYDI  147 (374)
Q Consensus        76 ~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L  147 (374)
                      +.++++..       ..|..|+||||+|+.+|+.+++++|+    +.+ .++|.+|.+|+||||+|+..|+.++++.|  
T Consensus       259 ~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll----~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~L--  332 (373)
T 2fo1_E          259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV----GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL--  332 (373)
T ss_dssp             HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH----HHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHH--
T ss_pred             HCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHH----HhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHH--
Confidence            99998732       25779999999999999999999998    776 89999999999999999999998777766  


Q ss_pred             ccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107          148 VPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       148 ~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                         ++.|++++.+|..|+||+++|...++.   +++++|.+.++
T Consensus       333 ---l~~gad~~~~d~~g~t~l~~A~~~g~~---~iv~~Ll~~~a  370 (373)
T 2fo1_E          333 ---IQQGASVEAVDATDHTARQLAQANNHH---NIVDIFDRCRP  370 (373)
T ss_dssp             ---HHTTCCSSCCCSSSCCHHHHHHHTTCH---HHHHHHHTTC-
T ss_pred             ---HHcCCCccCCCCCCCCHHHHHHHcCCH---HHHHHHHhcCc
Confidence               789999999999999999999888876   78888887554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=3e-27  Score=196.01  Aligned_cols=152  Identities=14%  Similarity=0.076  Sum_probs=136.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhc-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEA-DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV   98 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~   98 (374)
                      |.||||.|+..|+.++++.|++. +.++ +.+|. .|+||||+ +..|+.+++++|++.|+++ +.+|..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~-~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNR-FGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCT-TSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCC-CCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence            56999999999999999999998 2355 88898 99999999 9999999999999999996 8899999999999999


Q ss_pred             hccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCcc
Q 041107           99 SFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDL  178 (374)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~  178 (374)
                      +|+.+++++|+    +.|.++|.+|.+|+||||+|++.|+.+.++.|     ++. ++++..|.+|.||+++|...+.. 
T Consensus        78 ~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~-~~~~~~~~~g~t~l~~A~~~~~~-  146 (156)
T 1bd8_A           78 TGFLDTLKVLV----EHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-----AAE-SDLHRRDARGLTPLELALQRGAQ-  146 (156)
T ss_dssp             TTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH-----HTT-SCTTCCCTTSCCHHHHHHHSCCH-
T ss_pred             cCcHHHHHHHH----HcCCCCCCcCCCCCcHHHHHHHhChHHHHHHH-----Hhc-cCCCCcCCCCCCHHHHHHHcCcH-
Confidence            99999999998    78899999999999999999999987777765     566 99999999999999999887776 


Q ss_pred             HHHHHHHHHh
Q 041107          179 EQEIQELSKA  188 (374)
Q Consensus       179 ~~~i~~~l~~  188 (374)
                        ++++++.+
T Consensus       147 --~~v~~Ll~  154 (156)
T 1bd8_A          147 --DLVDILQG  154 (156)
T ss_dssp             --HHHHHHHT
T ss_pred             --HHHHHHHh
Confidence              56655543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=9.1e-28  Score=199.56  Aligned_cols=146  Identities=15%  Similarity=0.083  Sum_probs=117.3

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc-
Q 041107           13 TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWN-   91 (374)
Q Consensus        13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-   91 (374)
                      .+..+..|.||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+ .|+.+++++|+++++++ +.+|..|+| 
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~tt   80 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNS-YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTR   80 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCC
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcH
Confidence            4567889999999999999999999999999998 89999 9999999985 99999999999999996 889999999 


Q ss_pred             HHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHH
Q 041107           92 VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY  171 (374)
Q Consensus        92 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a  171 (374)
                      |||+|+.+++.+++++|+    +.|+++|.+|.+|+||||+|+..|+.+.++.|     ++.|++++..|..|.||.+-+
T Consensus        81 pL~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLH----RAGARLDVRDAWGRLPVDLAEELGHRDVARYL-----RAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH-----SSCC-----------------
T ss_pred             HHHHHHHCCCHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHhCHHHHHHHH-----HHcCCCCCccCcCcCcccccC
Confidence            999999999999999999    77999999999999999999999987777666     899999999999999998744

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=1.6e-26  Score=209.70  Aligned_cols=179  Identities=21%  Similarity=0.151  Sum_probs=156.1

Q ss_pred             hHHHHhhCCcccccc-CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107            2 PLLLLDKKKSLTRER-DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE   80 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~-d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   80 (374)
                      ++.|++.+. .++.+ +..|+||||+|++.|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++++++
T Consensus        21 v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~   97 (285)
T 1wdy_A           21 VQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKK-NGATPFLLAAIAGSVKLLKLFLSKGAD   97 (285)
T ss_dssp             HHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            566776654 45555 788999999999999999999999999998 88998 999999999999999999999999999


Q ss_pred             ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhccc----------CCCCCcHHHHHHhhccccccceeeeccc
Q 041107           81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKK----------DVKGNTPFHVLAAVCRQSYDARYDIVPW  150 (374)
Q Consensus        81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~----------d~~G~T~LH~A~~~g~~~~~~~l~L~~~  150 (374)
                      + +..|..|+||||+|+.+++.+++++|+    +.+.+++.+          |..|.||||+|+..|+.+.++.|     
T Consensus        98 ~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----  167 (285)
T 1wdy_A           98 V-NECDFYGFTAFMEAAVYGKVKALKFLY----KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL-----  167 (285)
T ss_dssp             T-TCBCTTCCBHHHHHHHTTCHHHHHHHH----HTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHH-----
T ss_pred             C-CccCcccCCHHHHHHHhCCHHHHHHHH----HhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHH-----
Confidence            6 888999999999999999999999998    667777776          88999999999999987777766     


Q ss_pred             ccc-ccccccccCCCCChHHHHHhCCCc-cHHHHHHHHHhcCCCC
Q 041107          151 KIA-KAHFQATNKQNISAEHIYRYGFPD-LEQEIQELSKADGSGQ  193 (374)
Q Consensus       151 l~~-g~~~~~~n~~g~t~l~~a~~~~~~-~~~~i~~~l~~~~~~~  193 (374)
                      ++. |++++..|..|.||++.|...+.. ...++.+++.+.++..
T Consensus       168 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~  212 (285)
T 1wdy_A          168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV  212 (285)
T ss_dssp             HHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred             HHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC
Confidence            554 999999999999999998766553 3457888888876654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=1.9e-27  Score=202.10  Aligned_cols=151  Identities=23%  Similarity=0.279  Sum_probs=140.6

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++..+.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        21 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   98 (179)
T 3f6q_A           21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADI   98 (179)
T ss_dssp             HHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            678888889999999999999999999999999999999999999 88999 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN  161 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n  161 (374)
                       +..|..|+||||+|+..++.+++++|+    +.|++++.+|.+|+||||+|+..++....+.|     ++.|++++..+
T Consensus        99 -~~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L-----~~~g~~~~~~~  168 (179)
T 3f6q_A           99 -NAVNEHGNVPLHYACFWGQDQVAEDLV----ANGALVSICNKYGEMPVDKAKAPLRELLRERA-----EKMGQNLNRIP  168 (179)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHH-----HHTTCCCSCBC
T ss_pred             -CccCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCcchhccCCCCcHHHHHHHHHHHHHHHH-----HHhhcCcccCC
Confidence             889999999999999999999999999    78999999999999999999998876666655     88999998877


Q ss_pred             CCC
Q 041107          162 KQN  164 (374)
Q Consensus       162 ~~g  164 (374)
                      .++
T Consensus       169 ~~~  171 (179)
T 3f6q_A          169 YKD  171 (179)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            665

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=1.3e-26  Score=216.90  Aligned_cols=169  Identities=18%  Similarity=0.150  Sum_probs=142.4

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++ .+..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++++++.
T Consensus        74 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  150 (351)
T 3utm_A           74 VQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDL-WQFTPLHEAASKNRVEVCSLLLSHGADP  150 (351)
T ss_dssp             HHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHH-cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            344554 46778888889999999999999999999999988888 78888 8889999998888888888888876542


Q ss_pred             --------------------------------------------------------------------------------
Q 041107           82 --------------------------------------------------------------------------------   81 (374)
Q Consensus        82 --------------------------------------------------------------------------------   81 (374)
                                                                                                      
T Consensus       151 ~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~  230 (351)
T 3utm_A          151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA  230 (351)
T ss_dssp             TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHH
T ss_pred             ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHH
Confidence                                                                                            


Q ss_pred             ---------cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccc
Q 041107           82 ---------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKI  152 (374)
Q Consensus        82 ---------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~  152 (374)
                               .+.+|..|+||||+|+.+|+.+++++|+    +.|+++|.+|..|+||||+|+..|+.+.++.|     ++
T Consensus       231 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~L-----l~  301 (351)
T 3utm_A          231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH----KHGAKMNALDSLGQTALHRAALAGHLQTCRLL-----LS  301 (351)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HH
T ss_pred             HHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH-----HH
Confidence                     1346788999999999999999999998    78999999999999999999999998777766     88


Q ss_pred             cccccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          153 AKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       153 ~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      .|++++..|.+|+||+++|.    +   .+.+++.+.
T Consensus       302 ~gad~~~~~~~g~tal~~a~----~---~~~~~l~~~  331 (351)
T 3utm_A          302 YGSDPSIISLQGFTAAQMGN----E---AVQQILSES  331 (351)
T ss_dssp             TTCCTTCCCTTSCCHHHHSC----H---HHHHHHHHC
T ss_pred             cCCCCCCcCCCCCChhhhhh----H---HHHHHHHhc
Confidence            99999999999999999982    2   555666553

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=9.9e-28  Score=212.85  Aligned_cols=170  Identities=16%  Similarity=0.108  Sum_probs=143.0

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHhhcCC----cccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 041107           14 RERDRHGWTPLHYAVYLDRCFISKCLLEADK----SAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG   89 (374)
Q Consensus        14 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~----~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g   89 (374)
                      +.+|.+|+||||+|+..|+.++++.|++.+.    ++ +.+|. .|+||||+|+..|+.+++++|+++|+++ +.+|..|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g   78 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRG   78 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHh-hccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCC
Confidence            4678999999999999999999999999765    45 88888 9999999999999999999999999996 8899999


Q ss_pred             CcHHHHHHHhccHHHHHhHHhhccc--chhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccC-CCCC
Q 041107           90 WNVLHFAMVSFYARDLKHLVDKYPA--VRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNK-QNIS  166 (374)
Q Consensus        90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~--~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~-~g~t  166 (374)
                      +||||+|+..++.+++++|++....  ....++..|..|+||||+|+..|+...++.|     ++.|++++..|. .|.|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~~g~t  153 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL-----VSLGADVNAQEPCNGRT  153 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHH-----HHHTCCTTCCCTTTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCCCCCCCCCC
Confidence            9999999999999999999843211  1234788999999999999999987777666     889999999998 9999


Q ss_pred             hHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          167 AEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       167 ~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      |+|+|...+..   +++++|.+.|+...
T Consensus       154 pL~~A~~~~~~---~~v~~Ll~~ga~~~  178 (236)
T 1ikn_D          154 ALHLAVDLQNP---DLVSLLLKCGADVN  178 (236)
T ss_dssp             HHHHHHHTTCH---HHHHHHHTTTCCSC
T ss_pred             HHHHHHHcCCH---HHHHHHHHcCCCCC
Confidence            99999888776   88888888776543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=201.99  Aligned_cols=166  Identities=16%  Similarity=0.021  Sum_probs=125.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH
Q 041107           13 TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNV   92 (374)
Q Consensus        13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~   92 (374)
                      ++..|..|.||||.|++.|+.+++++|++.|.++ +.++. .|.||||+|+..|+.+++++|++.+++.....+..|+||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDK-ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCC-CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence            3456777888888888888888888888888777 77777 888888888888888888888888887655556668888


Q ss_pred             HHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHH
Q 041107           93 LHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYR  172 (374)
Q Consensus        93 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~  172 (374)
                      ||+|+..++.+++++|+    +.|.+++.+|..|.||||+|+..|+...++.|     ++.|++++..|..|.||+++|.
T Consensus        80 L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L-----l~~~~~~~~~~~~g~t~l~~a~  150 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLM----KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL-----IAKGQDVDMMDQNGMTPLMWAA  150 (240)
T ss_dssp             HHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHcCHHHHHHHH-----HhcCCCccccCCCCCcHHHHHH
Confidence            88888888888888887    66777888888888888888888776666555     6778888888888888888876


Q ss_pred             h-CCCccHHHHHHHHHhcCCC
Q 041107          173 Y-GFPDLEQEIQELSKADGSG  192 (374)
Q Consensus       173 ~-~~~~~~~~i~~~l~~~~~~  192 (374)
                      . ++..   .+.+++.+.+..
T Consensus       151 ~~~~~~---~~~~~L~~~~~~  168 (240)
T 3eu9_A          151 YRTHSV---DPTRLLLTFNVS  168 (240)
T ss_dssp             HHCCSS---TTHHHHHHTTCC
T ss_pred             HhCChH---HHHHHHHhcCCC
Confidence            3 3333   344445554433

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=3.5e-27  Score=215.77  Aligned_cols=142  Identities=13%  Similarity=-0.057  Sum_probs=123.8

Q ss_pred             HHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhc
Q 041107           33 CFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKY  112 (374)
Q Consensus        33 ~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~  112 (374)
                      .++.++|.+.  ++ +.+|. .|+||||+|+..|+.+++++|++.++++ +..  +|+||||+|+.+|+.+++++|+   
T Consensus        13 ~~v~~lL~~~--~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll---   82 (285)
T 3kea_A           13 KQLKSFLSSK--DT-FKADV-HGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILL---   82 (285)
T ss_dssp             HHHHHHHHST--TT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHH---
T ss_pred             HHHHHHHHhC--CC-CccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHH---
Confidence            4555555554  44 77898 9999999999999999999999999886 444  5999999999999999999999   


Q ss_pred             ccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCC-CChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107          113 PAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQN-ISAEHIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       113 ~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g-~t~l~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                       +.|+++|.+|.+|+||||+|+..|+.+.++.|     ++.|++++..|..| .||+|+|...+..   ++++++.+.++
T Consensus        83 -~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~L-----l~~ga~~~~~~~~g~~t~L~~A~~~~~~---~~v~~Ll~~g~  153 (285)
T 3kea_A           83 -FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF-----VKKNWRLMFYGKTGWKTSFYHAVMLNDV---SIVSYFLSEIP  153 (285)
T ss_dssp             -HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHCGGGGGCSSSGGGSHHHHHHHTTCH---HHHHHHHTTSC
T ss_pred             -HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH-----HhcCCCCCccCCCCCCCHHHHHHHcCCH---HHHHHHHhCCC
Confidence             77999999999999999999999987777766     78899999999999 8999999888776   78888888776


Q ss_pred             CC
Q 041107          192 GQ  193 (374)
Q Consensus       192 ~~  193 (374)
                      ..
T Consensus       154 ~~  155 (285)
T 3kea_A          154 ST  155 (285)
T ss_dssp             TT
T ss_pred             cc
Confidence            55

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=3.4e-27  Score=191.46  Aligned_cols=134  Identities=13%  Similarity=0.007  Sum_probs=123.9

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCC-
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR-   88 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-   88 (374)
                      +..++.+|..|.||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+. |+.+++++|+++++++ +.+|.. 
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~   77 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNR-FGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPAT   77 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCC-CCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCC
Confidence            4568899999999999999999999999999999998 89998 99999999999 9999999999999996 888988 


Q ss_pred             CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107           89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH  156 (374)
Q Consensus        89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~  156 (374)
                      |+||||+|+..++.+++++|+    +.|.+++.+|.+|+||||+|+..|+.+.++.|     ++.|+|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L-----l~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLH----RAGARLDVCDAWGRLPVDLAEEQGHRDIARYL-----HAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHH----HTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHH-----HHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCC
Confidence            999999999999999999999    78899999999999999999999987777655     666664

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=5e-27  Score=221.86  Aligned_cols=166  Identities=19%  Similarity=0.046  Sum_probs=111.7

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG   89 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g   89 (374)
                      .-..+..|.+|+||||+||..|+.++|++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++++++..   +.+|
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g   84 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHS---LWHG   84 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTT
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCC
Confidence            3456778899999999999999999999999999999 99999 99999999999999999999999998542   2356


Q ss_pred             CcHHHHHHHhccHHHHHhHHhhcccchhhhcc-----------------cCCCCCcHHHHHHhhc--cccccceeeeccc
Q 041107           90 WNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK-----------------KDVKGNTPFHVLAAVC--RQSYDARYDIVPW  150 (374)
Q Consensus        90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~-----------------~d~~G~T~LH~A~~~g--~~~~~~~l~L~~~  150 (374)
                      +||||+|+.+|+.+++++|++.....+.+++.                 +|.+|+||||+|+..|  +.+.++.|     
T Consensus        85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~L-----  159 (364)
T 3ljn_A           85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL-----  159 (364)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHH-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHH-----
Confidence            66666666666666666665432222334433                 5555666666666655  44444433     


Q ss_pred             cccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107          151 KIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       151 l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      ++.|++++..|..|.||+++|...+..   +++++|.+
T Consensus       160 l~~ga~~~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~  194 (364)
T 3ljn_A          160 VQLGASPTAKDKADETPLMRAMEFRNR---EALDLMMD  194 (364)
T ss_dssp             HHHTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHH
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCCH---HHHHHHHh
Confidence            455566666666666666655555444   44444444

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=3.1e-26  Score=210.12  Aligned_cols=163  Identities=17%  Similarity=0.107  Sum_probs=141.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107           17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA   96 (374)
Q Consensus        17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   96 (374)
                      +..|.||||.||..|+.++++.|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++|+++ +..|..|+||||+|
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A  113 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANV-DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAA  113 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            446889999999999999999999999998 88999 9999999999999999999999999996 88899999999999


Q ss_pred             HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccc------------------
Q 041107           97 MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQ------------------  158 (374)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~------------------  158 (374)
                      +.+|+.+++++|+    +.|.+++.+|.+|+||||+|+..++...+..+ +   ...+.+++                  
T Consensus       114 ~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l-l---~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (299)
T 1s70_B          114 ASCGYLDIAEYLI----SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE-V---NRQGVDIEAARKEEERIMLRDARQWL  185 (299)
T ss_dssp             HHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHH-H---HHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHH----hCCCCCCCcCCCCCCHHHHHHhcchHHHHHHH-H---hhcCCCchhhhhhhhhHHHHHHHHHH
Confidence            9999999999999    77899999999999999999988776555544 3   33444433                  


Q ss_pred             --------cccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          159 --------ATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       159 --------~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                              ..+..|.||+|+|...+..   +++++|.+.++..
T Consensus       186 ~~~~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~g~d~  225 (299)
T 1s70_B          186 NSGHINDVRHAKSGGTALHVAAAKGYT---EVLKLLIQARYDV  225 (299)
T ss_dssp             HHTCCCCCCCTTTCCCHHHHHHHHTCH---HHHHHHHTTTCCT
T ss_pred             hccCcchhhhcCCCCCHHHHHHHCCcH---HHHHHHHHcCCCC
Confidence                    3567899999999887776   7888888766544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=4.6e-26  Score=196.73  Aligned_cols=166  Identities=14%  Similarity=0.013  Sum_probs=146.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhhcCC-cccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 041107           17 DRHGWTPLHYAVYLDRCFISKCLLEADK-SAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHF   95 (374)
Q Consensus        17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~-~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   95 (374)
                      +..+.||||.|+..|+.+.++.|++.+. ++ +.+|. .|+||||+|+..|+.+++++|+++++++ +..|..|+||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence            4578999999999999999999999877 65 88998 9999999999999999999999999996 8899999999999


Q ss_pred             HHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccc-cccccccCCCCChHHHHHhC
Q 041107           96 AMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAK-AHFQATNKQNISAEHIYRYG  174 (374)
Q Consensus        96 A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g-~~~~~~n~~g~t~l~~a~~~  174 (374)
                      |+..++.+++++|++   ..+.+++.+|.+|+||||+|+..|+.+.++.|     ++.| ++++..|..|+||+|+|...
T Consensus        79 A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~~g~t~L~~A~~~  150 (201)
T 3hra_A           79 AGAQGRTEILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLL-----LEDGREDIDFQNDFGYTALIEAVGL  150 (201)
T ss_dssp             HHHTTCHHHHHHHHH---HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHH-----HHHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHh---ccCcccccccCCCCcHHHHHHHcCCHHHHHHH-----HHcCCCCcCCCCCCCCCHHHHHHHh
Confidence            999999999999984   34568999999999999999999987777766     6777 99999999999999999876


Q ss_pred             CCc--cHHHHHHHHHhcCCCC
Q 041107          175 FPD--LEQEIQELSKADGSGQ  193 (374)
Q Consensus       175 ~~~--~~~~i~~~l~~~~~~~  193 (374)
                      +..  ...++++++.+.++..
T Consensus       151 ~~~~~~~~~~v~~Ll~~ga~~  171 (201)
T 3hra_A          151 REGNQLYQDIVKLLMENGADQ  171 (201)
T ss_dssp             SCCSHHHHHHHHHHHHTTCCT
T ss_pred             ccchhhHHHHHHHHHHCCCCC
Confidence            652  2357888888877654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=9.3e-27  Score=207.40  Aligned_cols=142  Identities=18%  Similarity=0.101  Sum_probs=100.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107           17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA   96 (374)
Q Consensus        17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   96 (374)
                      +..|.||||.|++.|+.+.++.|+++|+++ +. +. .|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NP-LPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc-cc-Cc-hhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            457999999999999999999999999998 54 35 8999999999999999999999999986 88899999999999


Q ss_pred             HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCC-ChHHHH
Q 041107           97 MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNI-SAEHIY  171 (374)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~-t~l~~a  171 (374)
                      +.+|+.+++++|+    +.|+++|.+|.+|+||||+|+..|+.+.++.|     ++.|++++..|..|. ||+|+|
T Consensus        78 ~~~g~~~~v~~Ll----~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           78 VCAGHTEIVKFLV----QFGVNVNAADSDGWTPLHCAASCNNVQVCKFL-----VESGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             HHHTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCSSSCCCHHHHC
T ss_pred             HHcCCHHHHHHHH----HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCcceecCCCCcchHHHH
Confidence            9999999999999    77899999999999999999999987777666     889999999998887 999998

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=5.5e-26  Score=189.46  Aligned_cols=141  Identities=19%  Similarity=0.173  Sum_probs=126.2

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++ .+..++.+|..|+||||+|+. |+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        21 v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   96 (162)
T 1ihb_A           21 LTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDR-TGFAVIHDAARAGFLDTLQTLLEFQADV   96 (162)
T ss_dssp             HHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455565 567789999999999999999 9999999999999999 88999 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhh-hcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNL-IFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH  156 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~-~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~  156 (374)
                       +.+|..|+||||+|+.+++.+++++|+    +.+.+ ++.+|.+|+||||+|+..|+.+.++.|     ++.|+|
T Consensus        97 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L-----l~~GAd  162 (162)
T 1ihb_A           97 -NIEDNEGNLPLHLAAKEGHLRVVEFLV----KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM-----QANGAG  162 (162)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTC--
T ss_pred             -CCcCCCCCCHHHHHHHcCCHHHHHHHH----HccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH-----HHhCCC
Confidence             889999999999999999999999998    66765 699999999999999999987777665     677764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.93  E-value=1.9e-26  Score=207.14  Aligned_cols=163  Identities=14%  Similarity=-0.004  Sum_probs=137.3

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHhhcCCccccc----ccCCCCchHHHHHHHc---CCHHHHHHHHHhCCCccc----
Q 041107           19 HGWTPLHYAVYLDRCF----ISKCLLEADKSAALI----SDEDRKMTALHLAAGR---GDVWMVQEIIDHCPECCE----   83 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~----~v~~Ll~~~~~~~~~----~d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~----   83 (374)
                      .|+||||.|++.|+.+    ++++|++++.++ +.    +|. .|+||||+|+..   |+.+++++|++.+++...    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~-~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGS-TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTT-TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCC-CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            4889999999999997    667777799998 76    788 999999999999   999999999999876521    


Q ss_pred             ------cccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCC-------------CCcHHHHHHhhccccccce
Q 041107           84 ------VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVK-------------GNTPFHVLAAVCRQSYDAR  144 (374)
Q Consensus        84 ------~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~-------------G~T~LH~A~~~g~~~~~~~  144 (374)
                            ..|..|+||||+|+.+|+.+++++|+    +.|+++|.+|..             |+||||+|+..|+.+.++.
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~  154 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV----ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY  154 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHH----HcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                  23478999999999999999999999    778999999987             9999999999998777776


Q ss_pred             eeeccccc---cccccccccCCCCChHHHHHh--CCCcc----HHHHHHHHHhcCCC
Q 041107          145 YDIVPWKI---AKAHFQATNKQNISAEHIYRY--GFPDL----EQEIQELSKADGSG  192 (374)
Q Consensus       145 l~L~~~l~---~g~~~~~~n~~g~t~l~~a~~--~~~~~----~~~i~~~l~~~~~~  192 (374)
                      |     ++   .|++++.+|.+|+||+|+|..  .+...    ..+++++|.+.++.
T Consensus       155 L-----l~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~  206 (256)
T 2etb_A          155 L-----LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR  206 (256)
T ss_dssp             H-----HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-----HhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC
Confidence            6     67   899999999999999999986  33331    11267777765543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=8.3e-26  Score=189.54  Aligned_cols=136  Identities=18%  Similarity=0.204  Sum_probs=126.0

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++. +..++.+|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|+++++++
T Consensus        19 v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   95 (167)
T 3v31_A           19 LATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGK-GRESALSLACSKGYTDIVKMLLDCGVDV   95 (167)
T ss_dssp             HHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             HHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            4566666 4679999999999999999999999999999999998 88998 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                       +..|..|+||||+|+..++.+++++|+    +.|.+++.+|.+|+||||+|+..|+.+.++.|
T Consensus        96 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  154 (167)
T 3v31_A           96 -NEYDWNGGTPLLYAVHGNHVKCVKMLL----ESGADPTIETDSGYNSMDLAVALGYRSVQQVI  154 (167)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             -CcCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence             888999999999999999999999999    78899999999999999999999987776655

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=1.8e-25  Score=188.13  Aligned_cols=136  Identities=23%  Similarity=0.270  Sum_probs=125.1

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++. +..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        30 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  106 (169)
T 2y1l_E           30 VRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDH-AGMTPLRLAALFGHLEIVEVLLKNGADV  106 (169)
T ss_dssp             HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4555554 6778999999999999999999999999999999998 88998 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                       +..|..|+||||+|+.+++.+++++|+    +.|.+++.+|.+|+||||+|++.|+.+.++.|
T Consensus       107 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E          107 -NANDMEGHTPLHLAAMFGHLEIVEVLL----KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence             888999999999999999999999999    77899999999999999999999987666544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=3.1e-26  Score=191.74  Aligned_cols=136  Identities=21%  Similarity=0.199  Sum_probs=125.7

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++..+...+..|..|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        24 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  101 (165)
T 3twr_A           24 VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK-GGLVPLHNACSYGHYEVAELLVKHGAVV  101 (165)
T ss_dssp             HHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCC-CCCCHHHHHHHcCcHHHHHHHHhCCCCC
Confidence            567888888889999999999999999999999999999999999 99999 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                       +..|..|+||||+|+.+++.+++++|+    +.|++++.+|.+|+||||+|++ |+.++++.|
T Consensus       102 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A          102 -NVADLWKFTPLHEAAAKGKYEICKLLL----QHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             -TCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             -CCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence             889999999999999999999999999    7789999999999999999877 666555544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=1.3e-25  Score=185.80  Aligned_cols=133  Identities=20%  Similarity=0.213  Sum_probs=121.5

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++.+.. .+ .|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        18 v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   93 (153)
T 1awc_B           18 VRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTK-VDRTPLHMAASEGHANIVEVLLKHGADV   93 (153)
T ss_dssp             HHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcChHHHHHHHHHcCCCC
Confidence            5667777654 33 5889999999999999999999999999998 88998 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDA  143 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~  143 (374)
                       +.+|..|+||||+|+.+++.+++++|+    +.|++++.+|.+|+||||+|+..|+.+.++
T Consensus        94 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  150 (153)
T 1awc_B           94 -NAKDMLKMTALHWATEHNHQEVVELLI----KYGADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence             888999999999999999999999999    779999999999999999999998865554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.1e-25  Score=186.51  Aligned_cols=135  Identities=21%  Similarity=0.224  Sum_probs=124.8

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++..+..++.+|..|+||||+ +..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++|+++
T Consensus        18 v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   94 (156)
T 1bd8_A           18 VRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDT-SGTSPVHDAARTGFLDTLKVLVEHGADV   94 (156)
T ss_dssp             HHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            5677888667899999999999999 9999999999999999999 99999 9999999999999999999999999986


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                       +.+|..|+||||+|+.+|+.+++++|+    +. .+++.+|.+|+||||+|+..|+.+.++.|
T Consensus        95 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  152 (156)
T 1bd8_A           95 -NVPDGTGALPIHLAVQEGHTAVVSFLA----AE-SDLHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             -CCCCTTSCCHHHHHHHHTCHHHHHHHH----TT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             -CCcCCCCCcHHHHHHHhChHHHHHHHH----hc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence             889999999999999999999999998    55 88999999999999999999987666544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=8.9e-27  Score=206.30  Aligned_cols=156  Identities=18%  Similarity=0.102  Sum_probs=125.5

Q ss_pred             HHHHhhCC--ccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107            3 LLLLDKKK--SLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE   80 (374)
Q Consensus         3 ~~lL~~~~--~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   80 (374)
                      ++||++..  ...+..+.+|.||||+|+..|+.+++++|++.|+++ +.+|. .|+||||+|+..|+.+++++|++.|++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNE-EGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            45666543  334555667889999999999999999999999998 88998 999999999999999999999999999


Q ss_pred             ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHH--Hhhccccccceeeecccccccccc
Q 041107           81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVL--AAVCRQSYDARYDIVPWKIAKAHF  157 (374)
Q Consensus        81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A--~~~g~~~~~~~l~L~~~l~~g~~~  157 (374)
                      + +.+|..|+||||+|+.+|+.+++++|+    +.|++++.+| .+|+||||+|  +..|+.+.++.|     ++.|+++
T Consensus        80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~L-----l~~ga~~  149 (229)
T 2vge_A           80 V-NSPDSHGWTPLHCAASCNDTVICMALV----QHGAAIFATTLSDGATAFEKCDPYREGYADCATYL-----ADVEQSM  149 (229)
T ss_dssp             T-TCCCTTCCCHHHHHHHTTCHHHHHHHH----TTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHH-----HHHHHHT
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHH-----HHcCCCc
Confidence            6 888999999999999999999999998    7889999987 6999999999  777765555544     5666666


Q ss_pred             ccccCCCCChHHH
Q 041107          158 QATNKQNISAEHI  170 (374)
Q Consensus       158 ~~~n~~g~t~l~~  170 (374)
                      +..|..|.||++.
T Consensus       150 ~~~~~~~~~~l~~  162 (229)
T 2vge_A          150 GLMNSGAVYALWD  162 (229)
T ss_dssp             TTSGGGEEEESSC
T ss_pred             ccccCCchHHHHH
Confidence            6666666565554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.92  E-value=2.9e-26  Score=207.93  Aligned_cols=173  Identities=14%  Similarity=0.017  Sum_probs=136.8

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHhh----cCCcccc---cccCCCCchHHHHHHHc---CCHHHHHHHHHhCC
Q 041107           10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLE----ADKSAAL---ISDEDRKMTALHLAAGR---GDVWMVQEIIDHCP   79 (374)
Q Consensus        10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~----~~~~~~~---~~d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~   79 (374)
                      ++..+..|..|+||||+|++.|+.++|+.|++    .+.++..   .+|. .|+||||+|+..   |+.+++++|++.++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE-TGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTT-TCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCc-CCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            34567789999999999999999999998887    4444411   3577 999999999987   99999999999986


Q ss_pred             Ccc----------ccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCC--------------CCCcHHHHHHh
Q 041107           80 ECC----------EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDV--------------KGNTPFHVLAA  135 (374)
Q Consensus        80 ~~~----------~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~--------------~G~T~LH~A~~  135 (374)
                      +..          ...|..|+||||+|+.+|+.+++++|+    +.|+++|.+|.              +|+||||+|+.
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  157 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV----ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC  157 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHH
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHH----HCCCCcCccccccccccccccccccCCCCHHHHHHH
Confidence            521          225679999999999999999999999    77899999987              89999999999


Q ss_pred             hccccccceeeeccccc---cccccccccCCCCChHHHHHhCCCcc------HHHHHHHHHhcCCC
Q 041107          136 VCRQSYDARYDIVPWKI---AKAHFQATNKQNISAEHIYRYGFPDL------EQEIQELSKADGSG  192 (374)
Q Consensus       136 ~g~~~~~~~l~L~~~l~---~g~~~~~~n~~g~t~l~~a~~~~~~~------~~~i~~~l~~~~~~  192 (374)
                      .|+.+.++.|     ++   .|++++.+|.+|+||+|+|...+...      ..+++++|.+.++.
T Consensus       158 ~g~~~~v~~L-----l~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~  218 (273)
T 2pnn_A          158 TNQLAIVKFL-----LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK  218 (273)
T ss_dssp             TTCHHHHHHH-----HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHH-----HhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh
Confidence            9987777766     67   89999999999999999997755421      13566666665443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=2.2e-25  Score=191.40  Aligned_cols=136  Identities=21%  Similarity=0.088  Sum_probs=125.6

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++. +..++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus        51 v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  127 (192)
T 2rfm_A           51 IDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDF-SGKTPLMWSIIFGYSEMSYFLLEHGANV  127 (192)
T ss_dssp             HHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            4566665 5678899999999999999999999999999999998 89998 9999999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                       +.+|..|+||||+|+..++.+++++|+    +.|++++.+|.+|+||||+|+..|+.+.++.|
T Consensus       128 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L  186 (192)
T 2rfm_A          128 -NDRNLEGETPLIVASKYGRSEIVKKLL----ELGADISARDLTGLTAEASARIFGRQEVIKIF  186 (192)
T ss_dssp             -SCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence             889999999999999999999999999    77999999999999999999999987766654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=7.8e-26  Score=193.66  Aligned_cols=155  Identities=9%  Similarity=-0.060  Sum_probs=129.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCccccccc-CCCCchHHHHHHHcCCH----HHHHHHHHhCCCccccccCCCCcHHH
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKSAALISD-EDRKMTALHLAAGRGDV----WMVQEIIDHCPECCEVVDDRGWNVLH   94 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh   94 (374)
                      ++++||.|++.|+.+.++.+++.+.+.   ++ . .|+||||+|+.+|+.    +++++|+++|+++ +.+|..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~-~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED---KESV-LKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC---HHHH-HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc---cccc-CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            678999999999999999999877543   44 6 899999999999975    5999999999997 889999999999


Q ss_pred             HHHHhcc------HHHHHhHHhhcccchhhhcccCCCCC-cHHHHHHhhccc-----cccceeeeccccc-ccccccccc
Q 041107           95 FAMVSFY------ARDLKHLVDKYPAVRNLIFKKDVKGN-TPFHVLAAVCRQ-----SYDARYDIVPWKI-AKAHFQATN  161 (374)
Q Consensus        95 ~A~~~~~------~~~~~~Ll~~~~~~~~~~n~~d~~G~-T~LH~A~~~g~~-----~~~~~l~L~~~l~-~g~~~~~~n  161 (374)
                      +|+..++      .+++++|+    +.|+++|.+|.+|+ ||||+|+..+..     .+++.|     ++ .|++++.+|
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll----~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~L-----l~~~gad~~~~d  151 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFL----EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLI-----FSQSGLQLLIKD  151 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHH----HTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHH-----HTSTTCCTTCCC
T ss_pred             HHHHcCCcchhhHHHHHHHHH----HCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHH-----HHhcCCCCcccC
Confidence            9999876      57899998    88999999999999 999999985432     233344     67 999999999


Q ss_pred             CCCCChHHHHHhCCCc-cHHHHHHHHHh
Q 041107          162 KQNISAEHIYRYGFPD-LEQEIQELSKA  188 (374)
Q Consensus       162 ~~g~t~l~~a~~~~~~-~~~~i~~~l~~  188 (374)
                      +.|+||+|+|.+.+.. .++.+.++.++
T Consensus       152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          152 KWGLTALEFVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             TTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999887665 34444444444

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=7.6e-25  Score=174.15  Aligned_cols=126  Identities=29%  Similarity=0.286  Sum_probs=117.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV   98 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~   98 (374)
                      +|+||||+|++.|+.+++++|++++.++ +.++. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence            5999999999999999999999999998 88898 9999999999999999999999999986 8889999999999999


Q ss_pred             hccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107           99 SFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH  156 (374)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~  156 (374)
                      .++.+++++|+    +.|.+++.+|.+|+||||+|+..|+.+.++.|     ++.|+|
T Consensus        78 ~~~~~~~~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L-----l~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLL----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL-----LEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHTCC
T ss_pred             cChHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHcCcHHHHHHH-----HHcCCC
Confidence            99999999998    77899999999999999999999987777655     666764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=1.6e-24  Score=202.55  Aligned_cols=161  Identities=17%  Similarity=0.118  Sum_probs=140.3

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHhh-cCCcccccccCCCCchHHHHHHHcCC----HHHHHHHHHhCCCccccccCC
Q 041107           14 RERDRHGWTPLHYAVYLDRCFISKCLLE-ADKSAALISDEDRKMTALHLAAGRGD----VWMVQEIIDHCPECCEVVDDR   88 (374)
Q Consensus        14 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~~   88 (374)
                      +..+..|.||||+|++.|+.++|++|++ .|+++ +.+|. .|+||+|.++..++    .+++++|+++|+++ +.+|.+
T Consensus       162 ~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~  238 (337)
T 4g8k_A          162 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGER  238 (337)
T ss_dssp             --CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGG
T ss_pred             ccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCC
Confidence            3456679999999999999999999996 58888 99999 99999998876543    46889999999996 889999


Q ss_pred             CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChH
Q 041107           89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAE  168 (374)
Q Consensus        89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l  168 (374)
                      |+||||+|+..++.++++.|++   ..+.++|.+|.+|+||||+|++.|+.++++.|     ++.|+++|..     +|+
T Consensus       239 g~t~L~~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L-----l~~GAd~n~~-----~~L  305 (337)
T 4g8k_A          239 GKTPLILAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLLAVELKLKKIAELL-----CKRGASTDCG-----DLV  305 (337)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH-----HTTSCSSTTC-----CHH
T ss_pred             CCCHHHHHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCC-----CHH
Confidence            9999999999999999999983   35789999999999999999999998877766     8899988754     699


Q ss_pred             HHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          169 HIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       169 ~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      ++|...+..   +++++|.+.|+..
T Consensus       306 ~~A~~~~~~---~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          306 MTARRNYDH---SLVKVLLSHGAKE  327 (337)
T ss_dssp             HHHHHTTCH---HHHHHHHHTTCCC
T ss_pred             HHHHHcCCH---HHHHHHHHCcCCC
Confidence            999888776   8899999988865

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=3e-26  Score=202.86  Aligned_cols=160  Identities=14%  Similarity=0.031  Sum_probs=140.1

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.|+++
T Consensus        37 v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~~  113 (229)
T 2vge_A           37 VQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDS-HGWTPLHCAASCNDTVICMALVQHGAAI  113 (229)
T ss_dssp             HHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            4566665 5678999999999999999999999999999999999 99999 9999999999999999999999999997


Q ss_pred             cccc-cCCCCcHHHHH--HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc--
Q 041107           82 CEVV-DDRGWNVLHFA--MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH--  156 (374)
Q Consensus        82 ~~~~-d~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~--  156 (374)
                       +.. |..|+||||+|  +..++.+++++|+    +.|++++.+|..|.||||.++...   ... + +   ++.|++  
T Consensus       114 -~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll----~~ga~~~~~~~~~~~~l~~~~~~~---~~~-~-l---l~~ga~~~  180 (229)
T 2vge_A          114 -FATTLSDGATAFEKCDPYREGYADCATYLA----DVEQSMGLMNSGAVYALWDYSAEF---GDE-L-S---FREGESVT  180 (229)
T ss_dssp             -TCCCSSTTCCTGGGCCTTSTTHHHHHHHHH----HHHHHTTTSGGGEEEESSCBCCSS---TTB-C-C---BCTTCEEE
T ss_pred             -ccccCCCCCCHHHHHHHHhcChHHHHHHHH----HcCCCcccccCCchHHHHHHhhcc---ccc-c-C---cccccccc
Confidence             555 47999999999  9999999999999    889999999999999999665532   233 3 4   677877  


Q ss_pred             cccccCCCCChHHHHHhCCCc
Q 041107          157 FQATNKQNISAEHIYRYGFPD  177 (374)
Q Consensus       157 ~~~~n~~g~t~l~~a~~~~~~  177 (374)
                      ++.+|.+|+||+++|...+..
T Consensus       181 ~~~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          181 VLRRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             EEESSCTTCSSEEEEEETTEE
T ss_pred             ccccCCCcccHHHHHHHcCCc
Confidence            778999999999999776654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=4.6e-25  Score=178.81  Aligned_cols=124  Identities=18%  Similarity=0.141  Sum_probs=113.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107           15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH   94 (374)
Q Consensus        15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   94 (374)
                      .....|.||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|+||||
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~   85 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDE-YGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLH   85 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHH
Confidence            34567899999999999999999999999998 88998 9999999999999999999999999996 888999999999


Q ss_pred             HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                      +|+.+++.+++++|+    +.|.+++.+|.+|+||||+|+..|+.+.++.|
T Consensus        86 ~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  132 (136)
T 2jab_A           86 LAAFIGHLEIAEVLL----KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL  132 (136)
T ss_dssp             HHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHH----HcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence            999999999999999    77899999999999999999999987666544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=3.3e-25  Score=179.78  Aligned_cols=122  Identities=19%  Similarity=0.107  Sum_probs=114.0

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107           15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH   94 (374)
Q Consensus        15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   94 (374)
                      .+|.+|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDH-AGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence            57889999999999999999999999999999 89999 9999999999999999999999999986 888999999999


Q ss_pred             HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccc
Q 041107           95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDA  143 (374)
Q Consensus        95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~  143 (374)
                      +|+.+++.+++++|+    +.|++++.+|.+|+||||+|+..+..+...
T Consensus        82 ~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~  126 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLL----SYGASRNAVNIFGLRPVDYTDDESMKSLLL  126 (137)
T ss_dssp             HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence            999999999999998    779999999999999999999887654443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=8.1e-25  Score=196.78  Aligned_cols=135  Identities=17%  Similarity=0.075  Sum_probs=120.2

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccc--------------CCCCchHHHHHHHcCCHHHHHHHHH-
Q 041107           12 LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISD--------------EDRKMTALHLAAGRGDVWMVQEIID-   76 (374)
Q Consensus        12 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~~g~tpLh~Aa~~g~~~~v~~Ll~-   76 (374)
                      ..+..|..|+||||+|+..|+.++|++|+++|+++ +.++              . .|+||||+|+..|+.+++++|++ 
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFY-FGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCC-SCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCccccccccc-CCCCHHHHHHHcCCHHHHHHHHhc
Confidence            34556668999999999999999999999999999 7777              5 89999999999999999999999 


Q ss_pred             --hCCCccccccCCCCcHHHHHHHhcc---------HHHHHhHHhhcccchhhh-------cccCCCCCcHHHHHHhhcc
Q 041107           77 --HCPECCEVVDDRGWNVLHFAMVSFY---------ARDLKHLVDKYPAVRNLI-------FKKDVKGNTPFHVLAAVCR  138 (374)
Q Consensus        77 --~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~~~~Ll~~~~~~~~~~-------n~~d~~G~T~LH~A~~~g~  138 (374)
                        .++++ +.+|..|+||||+|+..++         .+++++|+    +.|+++       +.+|.+|+||||+|++.|+
T Consensus       163 ~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll----~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          163 GHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL----IKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             SSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH----HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             cccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH----HhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence              88886 8899999999999998776         68999998    788888       7899999999999999999


Q ss_pred             ccccceeeeccccccccccc
Q 041107          139 QSYDARYDIVPWKIAKAHFQ  158 (374)
Q Consensus       139 ~~~~~~l~L~~~l~~g~~~~  158 (374)
                      .++++.|     +++|.+..
T Consensus       238 ~~~v~~L-----l~~g~~~~  252 (260)
T 3jxi_A          238 IGIFQHI-----IRREIADA  252 (260)
T ss_dssp             HHHHHHH-----HHHHHHHH
T ss_pred             HHHHHHH-----HHhCCCcc
Confidence            8877766     67776654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=4e-25  Score=196.79  Aligned_cols=159  Identities=12%  Similarity=0.055  Sum_probs=128.4

Q ss_pred             HHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 041107            3 LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC   82 (374)
Q Consensus         3 ~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   82 (374)
                      +.|++ .+..++. +..|.||||.|+..|+.++++.|++.++++ +.+|. .|+||||+|+..|+.+++++|+++++++ 
T Consensus        22 ~~ll~-~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-   96 (239)
T 1ycs_B           22 SERIA-HGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPND-EGITALHNAVCAGHTEIVKFLVQFGVNV-   96 (239)
T ss_dssp             -----------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCT-
T ss_pred             HHHhc-cCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence            34444 4455554 478999999999999999999999999998 99999 9999999999999999999999999996 


Q ss_pred             ccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCC-cHHHHH--Hhhccccccceeeecccccccccccc
Q 041107           83 EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGN-TPFHVL--AAVCRQSYDARYDIVPWKIAKAHFQA  159 (374)
Q Consensus        83 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~-T~LH~A--~~~g~~~~~~~l~L~~~l~~g~~~~~  159 (374)
                      +.+|..|+||||+|+.+|+.+++++|+    +.|++++.+|..|. ||||+|  +..|+.+.++.|     ++.|++++.
T Consensus        97 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L-----l~~~a~~~~  167 (239)
T 1ycs_B           97 NAADSDGWTPLHCAASCNNVQVCKFLV----ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL-----YGVQEKMGI  167 (239)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH-----HHHHHHTTT
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH-----HHhhhcccc
Confidence            889999999999999999999999999    78999999998887 999999  777777766655     788888877


Q ss_pred             c---------cCCCCChHHHHHhCC
Q 041107          160 T---------NKQNISAEHIYRYGF  175 (374)
Q Consensus       160 ~---------n~~g~t~l~~a~~~~  175 (374)
                      .         +..+.++.+++...+
T Consensus       168 ~~~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          168 MNKGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             TGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred             cccceEEEEeccCCCCCCcccccCC
Confidence            6         455677777664433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=4.8e-25  Score=193.83  Aligned_cols=141  Identities=18%  Similarity=0.078  Sum_probs=115.7

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHh-CCCccccccCCCCc
Q 041107           13 TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH-CPECCEVVDDRGWN   91 (374)
Q Consensus        13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t   91 (374)
                      ++.+|.+|.||||+||..|+.++++.|++.|+++ +.+|. .|+||||+|+..|+.+++++|++. ++++ +.+|..|+|
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~t  142 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDK-AGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDT  142 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCC
Confidence            4456778999999999999999999999999998 89999 999999999999999999999999 7775 889999999


Q ss_pred             HHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCC
Q 041107           92 VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNI  165 (374)
Q Consensus        92 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~  165 (374)
                      |||+|+.+|+.+++++|+    +.|++++.+|.+|+||||+|+..|+.++++.+     +..|++.+..|.+|.
T Consensus       143 pL~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l-----~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLL----AKGARTDLRNIEKKLAFDMATNAACASLLKKK-----QGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHH----HHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------------
T ss_pred             HHHHHHHcCCHHHHHHHH----HcCCCCccccCCCCCHHHHhcchhHHHHHHHH-----hccchhhhccchhhh
Confidence            999999999999999999    77999999999999999999999887776655     788888888877654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.90  E-value=2.6e-24  Score=195.81  Aligned_cols=137  Identities=21%  Similarity=0.171  Sum_probs=126.5

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHH-----HcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAV-----YLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID   76 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa-----~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~   76 (374)
                      ++.|++.+...++.+|..|+||||+|+     ..++.++++.|++.|... +..+. .|+||||+|+..|+.+++++|++
T Consensus       127 v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~  204 (276)
T 4hbd_A          127 VQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQ-AGQTALMLAVSHGRVDVVKALLA  204 (276)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTT-TCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHh
Confidence            567788777689999999999999999     668899999999999877 77888 99999999999999999999999


Q ss_pred             hCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhccc-chhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPA-VRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        77 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~-~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                      .|+++ +.+|.+|+||||+|+.+|+.+++++|+    + .|+++|.+|.+|+||||+|++.|+.++++.|
T Consensus       205 ~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll----~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~L  269 (276)
T 4hbd_A          205 CEADV-NVQDDDGSTALMCACEHGHKEIAGLLL----AVPSCDISLTDRDGSTALMVALDAGQSEIASML  269 (276)
T ss_dssp             TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH----TSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHH----hcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99996 889999999999999999999999998    5 7899999999999999999999987777655

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=3.2e-24  Score=170.61  Aligned_cols=114  Identities=15%  Similarity=0.016  Sum_probs=105.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107           17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA   96 (374)
Q Consensus        17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   96 (374)
                      +..|.||||+|+..|+.++++.|++.+.++ +.+|. .|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLE-GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCT-TSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            567899999999999999999999999998 89999 9999999999999999999999999996 88999999999999


Q ss_pred             HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhc
Q 041107           97 MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC  137 (374)
Q Consensus        97 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g  137 (374)
                      +..++.+++++|+    +.|++++.+|.+|+||||+|+..+
T Consensus        81 ~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           81 VYEGHVSCVKLLL----SKGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             HHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHhCCHH
Confidence            9999999999999    778999999999999999996543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=3.6e-25  Score=189.53  Aligned_cols=144  Identities=10%  Similarity=-0.010  Sum_probs=119.9

Q ss_pred             HHHHhhCCccccccC-CCCCcHHHHHHHcCCH----HHHHHHhhcCCcccccccCCCCchHHHHHHHcCC------HHHH
Q 041107            3 LLLLDKKKSLTRERD-RHGWTPLHYAVYLDRC----FISKCLLEADKSAALISDEDRKMTALHLAAGRGD------VWMV   71 (374)
Q Consensus         3 ~~lL~~~~~~~~~~d-~~g~TpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~------~~~v   71 (374)
                      +.++...   ++.+| ..|+||||+|+..|+.    +++++|+++|+++ +.+|. .|+||||+|+..|+      .+++
T Consensus        23 ~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~-~g~TpLh~a~~~~~~~~~~~~~iv   97 (186)
T 3t8k_A           23 LELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTK-EGTTLFFPLFQGGGNDITGTTELC   97 (186)
T ss_dssp             HHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCT-TCCCTHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHcCCcchhhHHHHH
Confidence            3444443   34455 6799999999999985    5999999999999 99998 99999999999987      6889


Q ss_pred             HHHHHhCCCccccccCCCC-cHHHHHHHh-----ccHHHHHhHHhhccc-chhhhcccCCCCCcHHHHHHhhccccccce
Q 041107           72 QEIIDHCPECCEVVDDRGW-NVLHFAMVS-----FYARDLKHLVDKYPA-VRNLIFKKDVKGNTPFHVLAAVCRQSYDAR  144 (374)
Q Consensus        72 ~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~-----~~~~~~~~Ll~~~~~-~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~  144 (374)
                      ++|+++|+++ +.+|..|+ ||||+|+.+     +..+++++|+    + .|+++|.+|.+|+||||+|++.|+...++.
T Consensus        98 ~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll----~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~  172 (186)
T 3t8k_A           98 KIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF----SQSGLQLLIKDKWGLTALEFVKRCQKPIALKM  172 (186)
T ss_dssp             HHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHH----TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHH
T ss_pred             HHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHH----HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999997 89999999 999999994     4567899998    6 899999999999999999999998776664


Q ss_pred             eeecccccccccccccc
Q 041107          145 YDIVPWKIAKAHFQATN  161 (374)
Q Consensus       145 l~L~~~l~~g~~~~~~n  161 (374)
                      |     .+...+.+.++
T Consensus       173 L-----~~~~~~~~~~~  184 (186)
T 3t8k_A          173 M-----EDYIKKYNLKE  184 (186)
T ss_dssp             H-----HHHHHHHTCCC
T ss_pred             H-----HHHHHHHhccc
Confidence            4     44444444443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=3.3e-24  Score=182.89  Aligned_cols=140  Identities=20%  Similarity=0.123  Sum_probs=122.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHH
Q 041107           16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD-DRGWNVLH   94 (374)
Q Consensus        16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh   94 (374)
                      .|.+|+||||+|+..|+.++++.|++ +.++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+| ..|+||||
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~  115 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence            35689999999999999999999999 8888 88999 9999999999999999999999999997 5666 89999999


Q ss_pred             HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhC
Q 041107           95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYG  174 (374)
Q Consensus        95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~  174 (374)
                      +|+..++.+++++|+    +.|++++.+|.+|+||||+|++.++.                      ..+.+|+++++..
T Consensus       116 ~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~tpl~~A~~~~~~----------------------~~~~~~l~~a~~~  169 (183)
T 3deo_A          116 MAAGYVRPEVVEALV----ELGADIEVEDERGLTALELAREILKT----------------------TPKGNPMQFGRRI  169 (183)
T ss_dssp             HHHHTTCHHHHHHHH----HHTCCTTCCCTTSCCHHHHHHHHHHT----------------------CCCCSHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHH----HcCCCCcCCCCCCCCHHHHHHHhccC----------------------cccccHHHHHHHc
Confidence            999999999999999    77899999999999999999997642                      1345788888665


Q ss_pred             CCccHHHHHHHHHh
Q 041107          175 FPDLEQEIQELSKA  188 (374)
Q Consensus       175 ~~~~~~~i~~~l~~  188 (374)
                      +..   ++.+++.+
T Consensus       170 ~~~---~i~~~L~~  180 (183)
T 3deo_A          170 GLE---KVINVLEG  180 (183)
T ss_dssp             HHH---HHHHHHHT
T ss_pred             CHH---HHHHHHHH
Confidence            544   66666654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=3.1e-24  Score=173.91  Aligned_cols=133  Identities=14%  Similarity=0.031  Sum_probs=119.5

Q ss_pred             CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhccc
Q 041107           43 DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKK  122 (374)
Q Consensus        43 ~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~  122 (374)
                      ++++ +.++. .|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+. ++.+++++|+    +.+.++|.+
T Consensus         2 ~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll----~~g~~~~~~   73 (136)
T 1d9s_A            2 SPGI-HMLGG-SSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLL----LHGAEPNCA   73 (136)
T ss_dssp             CCCC-SCCCC-CCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHH----HHTCCSSCC
T ss_pred             CCCc-cCCCC-CCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHH----HCCCCCCCc
Confidence            3455 77888 9999999999999999999999999986 8889999999999999 9999999999    788999999


Q ss_pred             CCC-CCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107          123 DVK-GNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       123 d~~-G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                      |.+ |+||||+|+..|+.+.++.|     ++.|++++.+|..|+||+++|...+..   +++++|.+.|+
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~d~~g~tpl~~A~~~~~~---~~~~~Ll~~Ga  135 (136)
T 1d9s_A           74 DPATLTRPVHDAAREGFLDTLVVL-----HRAGARLDVCDAWGRLPVDLAEEQGHR---DIARYLHAATG  135 (136)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHH-----HHTCCCCCCCSSSSSCHHHHHHHHTCH---HHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCccCCCCCCHHHHHHHcCCH---HHHHHHHHcCC
Confidence            999 99999999999987777665     789999999999999999999887765   77777776554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1.1e-23  Score=188.05  Aligned_cols=140  Identities=20%  Similarity=0.124  Sum_probs=123.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHH
Q 041107           16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD-DRGWNVLH   94 (374)
Q Consensus        16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh   94 (374)
                      .+.+|.||||+|++.|+.++++.|++ +.++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+| ..|+||||
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~  116 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence            34579999999999999999999999 8888 89999 9999999999999999999999999997 5666 88999999


Q ss_pred             HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhC
Q 041107           95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYG  174 (374)
Q Consensus        95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~  174 (374)
                      +|+.+|+.+++++|+    +.|+++|.+|.+|+||||+|+..++                      +..+.||+++|...
T Consensus       117 ~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~l~~A~~~~~----------------------~~~~~~~l~~a~~~  170 (244)
T 3ui2_A          117 MAAGYVRPEVVEALV----ELGADIEVEDERGLTALELAREILK----------------------TTPKGNPMQFGRRI  170 (244)
T ss_dssp             HHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHHT----------------------TCCCSSHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHH----HCCCCCCCCCCCCCcHHHHHHHHHh----------------------ccCCCCHHHHHHHc
Confidence            999999999999999    7799999999999999999997432                      13578999998776


Q ss_pred             CCccHHHHHHHHHh
Q 041107          175 FPDLEQEIQELSKA  188 (374)
Q Consensus       175 ~~~~~~~i~~~l~~  188 (374)
                      +..   ++.+++.+
T Consensus       171 g~~---~iv~~L~~  181 (244)
T 3ui2_A          171 GLE---KVINVLEG  181 (244)
T ss_dssp             HHH---HHHHHHHH
T ss_pred             ChH---HHHHHHHH
Confidence            655   56666655

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.89  E-value=1.3e-23  Score=195.79  Aligned_cols=157  Identities=15%  Similarity=0.060  Sum_probs=129.5

Q ss_pred             cHHHHHHHcCCHHHHHHHhhcCCccccc-ccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhc
Q 041107           22 TPLHYAVYLDRCFISKCLLEADKSAALI-SDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSF  100 (374)
Q Consensus        22 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  100 (374)
                      +.+|.|+..+..++++.|++.|.++ +. +|. .|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+.+|
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDE-HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSV  175 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCS-CSCCST-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSS
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCc-ccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhc
Confidence            3358888888899999999999999 87 898 9999999999999999999999999997 899999999999999998


Q ss_pred             c---HHHHHhHHhhcccch-hhhcccCCCCCcHHHHHHh----hccccccceeeecccccccc-----------------
Q 041107          101 Y---ARDLKHLVDKYPAVR-NLIFKKDVKGNTPFHVLAA----VCRQSYDARYDIVPWKIAKA-----------------  155 (374)
Q Consensus       101 ~---~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~LH~A~~----~g~~~~~~~l~L~~~l~~g~-----------------  155 (374)
                      +   .++++.|+    +.+ .+++.+|.+|+||||+|++    .|+...++.|     ++.+.                 
T Consensus       176 ~~~~~~~~~~ll----~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~L-----l~~~~~~~~~~~~~~i~~~~~~  246 (327)
T 1sw6_A          176 NNYDSGTFEALL----DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY-----LDILMGWIVKKQNRPIQSGTNE  246 (327)
T ss_dssp             HHHHTTCHHHHH----HHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHH-----HHHHHHHHHHGGGCCEEEC---
T ss_pred             ccccHHHHHHHH----HhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHH-----HHHHHHHHhcccchHHHhhhhc
Confidence            8   67777776    333 6799999999999999998    6665555543     33321                 


Q ss_pred             ----------------------------ccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          156 ----------------------------HFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       156 ----------------------------~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                                                  ++|.+|.+|+||||+|...+..   +++++|.+.|+..
T Consensus       247 ~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~---~~v~~Ll~~Gad~  309 (327)
T 1sw6_A          247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI---SIVDALLDYGADP  309 (327)
T ss_dssp             -------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCH---HHHHHHHHTTCCT
T ss_pred             ccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCC
Confidence                                        5788899999999999887776   8888888877764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=9e-24  Score=171.24  Aligned_cols=126  Identities=19%  Similarity=0.189  Sum_probs=110.1

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCc
Q 041107           49 ISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNT  128 (374)
Q Consensus        49 ~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T  128 (374)
                      .+|. .|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..++.+++++|+    +.+.+++.+|.+|+|
T Consensus         5 ~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            5 FTNH-RGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLL----QHKALVNTTGYQNDS   78 (137)
T ss_dssp             CCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCGGGCC
T ss_pred             CcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCcccCcCCCCCC
Confidence            4677 9999999999999999999999999986 888999999999999999999999998    778999999999999


Q ss_pred             HHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107          129 PFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       129 ~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      |||+|+..|+.+.++.|     ++.|++++.+|.+|+||+++|...   ...++++++.+
T Consensus        79 ~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~tpl~~A~~~---~~~~~l~~l~~  130 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLL-----LSYGASRNAVNIFGLRPVDYTDDE---SMKSLLLLPEK  130 (137)
T ss_dssp             HHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCGGGGCCCH---HHHHHHSCC--
T ss_pred             HHHHHHHcCCHHHHHHH-----HHcCCCCCCCCCCCCCHHHHHhhc---cHHHHHhhccc
Confidence            99999999987777666     788999999999999999999532   23355544444

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=1.1e-22  Score=164.69  Aligned_cols=123  Identities=18%  Similarity=0.073  Sum_probs=112.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL  133 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A  133 (374)
                      .|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.+++.+++++|+    +.|.++|.+|.+|+||||+|
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLL----KNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCcCCCCCCCHHHHH
Confidence            7899999999999999999999999996 888999999999999999999999999    77899999999999999999


Q ss_pred             HhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          134 AAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       134 ~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      +..|+.+.++.|     ++.|++++..|.+|+||+++|...+..   ++.++|.+.
T Consensus        88 ~~~~~~~~v~~L-----l~~g~~~~~~~~~g~tpl~~A~~~~~~---~~~~~Ll~~  135 (136)
T 2jab_A           88 AFIGHLEIAEVL-----LKHGADVNAQDKFGKTAFDISIGNGNE---DLAEILQKL  135 (136)
T ss_dssp             HHHTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHC
T ss_pred             HHcCCHHHHHHH-----HHcCCCCcCcCCCCCCHHHHHHHCCCH---HHHHHHHHc
Confidence            999987777666     788999999999999999999887776   667766653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=8.7e-23  Score=187.99  Aligned_cols=139  Identities=17%  Similarity=0.074  Sum_probs=120.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCccccc------ccCCCCchHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCC
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKSAALI------SDEDRKMTALHLAAGR---GDVWMVQEIIDHCPECCEVVDDRGW   90 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~------~d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~   90 (374)
                      +.++||.|+..|+.+.++.|++.++++ +.      .+. .|+||||+|+..   |+.+++++|+++++++ +.+|.+|+
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQA-PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCS-CEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCC-CCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence            457799999999999999999999998 55      577 999999999997   8999999999999996 88999999


Q ss_pred             cHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHH
Q 041107           91 NVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHI  170 (374)
Q Consensus        91 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~  170 (374)
                      ||||+|+..|+.+++++|+    +.|++++.+|.+|+||||+|+..|+.++++.|     ++.|++      .|.||+|+
T Consensus       228 TpLh~A~~~g~~~~v~~Ll----~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~L-----l~~ga~------~g~tpLh~  292 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLL----KGRALVGTVNEAGETALDIARKKHHKECEELL-----EQAQAG------TFAFPLHV  292 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHH----HTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHH-----HHHHHH------TTSSCCC-
T ss_pred             CHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHhcCC------CCCChhHH
Confidence            9999999999999999999    78999999999999999999999987777655     677776      68999999


Q ss_pred             HHhCCC
Q 041107          171 YRYGFP  176 (374)
Q Consensus       171 a~~~~~  176 (374)
                      |...+.
T Consensus       293 A~~~g~  298 (301)
T 2b0o_E          293 DYSWVI  298 (301)
T ss_dssp             ------
T ss_pred             HHhcCC
Confidence            976554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=3.2e-22  Score=158.82  Aligned_cols=125  Identities=24%  Similarity=0.228  Sum_probs=114.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL  133 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A  133 (374)
                      +|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..++.+++++|+    +.+.+++.+|..|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL----EAGADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHH----HcCCCCcccCCCCCcHHHHH
Confidence            5899999999999999999999999986 788999999999999999999999998    77889999999999999999


Q ss_pred             HhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107          134 AAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       134 ~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                      +..|+.+.++.|     ++.|++++.+|.+|+||+++|...+..   ++++++.+.|+
T Consensus        76 ~~~~~~~~~~~L-----l~~g~~~~~~~~~g~t~l~~A~~~~~~---~~~~~Ll~~Ga  125 (126)
T 1n0r_A           76 ARNGHLEVVKLL-----LEAGADVNAKDKNGRTPLHLAARNGHL---EVVKLLLEAGA  125 (126)
T ss_dssp             HHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHTC
T ss_pred             HHcChHHHHHHH-----HHcCCCCcccCCCCCCHHHHHHHcCcH---HHHHHHHHcCC
Confidence            999987777666     788999999999999999999887776   78888777665

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=1.7e-22  Score=167.54  Aligned_cols=123  Identities=15%  Similarity=0.039  Sum_probs=98.4

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCch-HHHHHHHcCCHHHHHHHHHhCCC
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMT-ALHLAAGRGDVWMVQEIIDHCPE   80 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t-pLh~Aa~~g~~~~v~~Ll~~~~~   80 (374)
                      ++.|++. +..++.+|..|+||||+|+ .|+.+++++|+++|+++ +.+|. .|+| |||+|+..|+.+++++|++++++
T Consensus        28 v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~-~g~ttpL~~A~~~~~~~~v~~Ll~~ga~  103 (156)
T 1bi7_B           28 VRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADP-ATLTRPVHDAAREGFLDTLVVLHRAGAR  103 (156)
T ss_dssp             HHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCT-TTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHHCCCHHHHHHHHHcCCC
Confidence            4556655 6789999999999999985 89999999999999999 99999 9999 99999999999999999999999


Q ss_pred             ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107           81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL  133 (374)
Q Consensus        81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A  133 (374)
                      + +.+|..|+||||+|+.+++.+++++|+    +.|++++.+|..|+||.+-+
T Consensus       104 ~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          104 L-DVRDAWGRLPVDLAEELGHRDVARYLR----AAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             S-SCCCTTCCCHHHHHHHHTCHHHHHHHS----SCC-----------------
T ss_pred             C-cccCCCCCCHHHHHHHhCHHHHHHHHH----HcCCCCCccCcCcCcccccC
Confidence            6 889999999999999999999999998    88999999999999998744

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=3.6e-22  Score=158.73  Aligned_cols=108  Identities=16%  Similarity=0.026  Sum_probs=101.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL  133 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A  133 (374)
                      .|.||||+|+..|+.++++.|++.++++ +..|..|+||||+|+.+++.+++++|+    +.|.++|.+|.+|+||||+|
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLL----LKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHH----TTTCCTTCCCTTSCCHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCcCCCCCCCHHHHH
Confidence            7899999999999999999999999986 888999999999999999999999998    78899999999999999999


Q ss_pred             HhhccccccceeeeccccccccccccccCCCCChHHHH
Q 041107          134 AAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY  171 (374)
Q Consensus       134 ~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a  171 (374)
                      +..|+.+.++.|     ++.|++++.+|.+|+||+++|
T Consensus        81 ~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           81 VYEGHVSCVKLL-----LSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHcCCHHHHHHH-----HHcCCCCCCcCCCCCCHHHHh
Confidence            999987777665     788999999999999999999

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=1e-21  Score=154.05  Aligned_cols=109  Identities=21%  Similarity=0.132  Sum_probs=101.5

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107           15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH   94 (374)
Q Consensus        15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   94 (374)
                      .+|.+|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSK-DGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCS-SSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence            46899999999999999999999999999998 88998 9999999999999999999999999996 888999999999


Q ss_pred             HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHH
Q 041107           95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPF  130 (374)
Q Consensus        95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~L  130 (374)
                      +|+..++.+++++|+    +.|+++|.+|..|.||-
T Consensus        81 ~A~~~~~~~~~~~Ll----~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLD----AKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHH----TTSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHH----HcCCCCCcCCccccccc
Confidence            999999999999998    88999999999999873

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=7.3e-22  Score=186.29  Aligned_cols=148  Identities=13%  Similarity=0.037  Sum_probs=113.9

Q ss_pred             CCCCCcHHHHHHHc-CCHHHHHHHhhcCCccccccc--CCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHH
Q 041107           17 DRHGWTPLHYAVYL-DRCFISKCLLEADKSAALISD--EDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVL   93 (374)
Q Consensus        17 d~~g~TpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L   93 (374)
                      +..+.||||.|+.. |+.++++.|+++|+++ +..+  . .|+||||+|+..|+.+++++|+++++++ +..|..|+|||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~-~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpL  272 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQ-DNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPL  272 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-Ccccccc-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            34567899999999 9999999999999999 7777  6 9999999999999999999999999996 88999999999


Q ss_pred             HHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107           94 HFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY  173 (374)
Q Consensus        94 h~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~  173 (374)
                      |+|+..++.+++++|+    +.|++++.+|.+|+||||+|+..|+.+++..| + .....+.+....+..+.|+++++..
T Consensus       273 h~A~~~g~~~~v~~LL----~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL-l-~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          273 HHATILGHTGLACLFL----KRGADLGARDSEGRDPLTIAMETANADIVTLL-R-LAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-H-HHHC---------------------
T ss_pred             HHHHHcCcHHHHHHHH----HCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHH-H-HcCCCcccccccCCCCCCHHHHHHH
Confidence            9999999999999999    78999999999999999999999987777655 2 1112334555677788899888754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=1.9e-21  Score=179.02  Aligned_cols=124  Identities=15%  Similarity=0.016  Sum_probs=103.7

Q ss_pred             hHHHHhhCCccccc------cCCCCCcHHHHHHHc---CCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHH
Q 041107            2 PLLLLDKKKSLTRE------RDRHGWTPLHYAVYL---DRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQ   72 (374)
Q Consensus         2 ~~~lL~~~~~~~~~------~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~   72 (374)
                      +++|+.. +.+++.      .|..|+||||+|+..   |+.+++++|+++|+++ +.+|. .|+||||+|+..|+.++++
T Consensus       167 v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~-~G~TpLh~A~~~g~~~~v~  243 (301)
T 2b0o_E          167 VLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAA-DGNTALHYAALYNQPDCLK  243 (301)
T ss_dssp             HHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCT-TCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHH
Confidence            3455544 455666      688999999999997   8999999999999999 99998 9999999999999999999


Q ss_pred             HHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccc
Q 041107           73 EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQ  139 (374)
Q Consensus        73 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~  139 (374)
                      +|+++|+++ +.+|.+|+||||+|+..++.+++++|+    +.+++      .|+||||+|++.|+.
T Consensus       244 ~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll----~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          244 LLLKGRALV-GTVNEAGETALDIARKKHHKECEELLE----QAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHH----HHHHH------TTSSCCC--------
T ss_pred             HHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH----HhcCC------CCCChhHHHHhcCCc
Confidence            999999996 899999999999999999999999998    55544      689999999998863

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=6.1e-21  Score=143.85  Aligned_cols=88  Identities=31%  Similarity=0.356  Sum_probs=83.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV   98 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~   98 (374)
                      +|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            5899999999999999999999999999 99999 9999999999999999999999999996 8899999999999999


Q ss_pred             hccHHHHHhHH
Q 041107           99 SFYARDLKHLV  109 (374)
Q Consensus        99 ~~~~~~~~~Ll  109 (374)
                      .++.+++++|+
T Consensus        78 ~~~~~~~~~Ll   88 (93)
T 1n0q_A           78 NGHLEVVKLLL   88 (93)
T ss_dssp             TTCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            99999999998

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=1.3e-22  Score=173.00  Aligned_cols=134  Identities=16%  Similarity=0.114  Sum_probs=112.6

Q ss_pred             HHcCCHHHHHHHhhcCCccc----------ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 041107           28 VYLDRCFISKCLLEADKSAA----------LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAM   97 (374)
Q Consensus        28 a~~g~~~~v~~Ll~~~~~~~----------~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   97 (374)
                      ++.|..+.+++|++.+....          ...+. +|+||||+|+..|+.++++.|++ +.++ +.+|..|+||||+|+
T Consensus         8 a~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~   84 (183)
T 3deo_A            8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA   84 (183)
T ss_dssp             EEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHH-HHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHH
T ss_pred             HHhcCCchhHHHHHHhCCCCccccchhcccccCCC-CCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHH
Confidence            34455556666665322211          12355 88999999999999999999999 7775 889999999999999


Q ss_pred             HhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107           98 VSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY  173 (374)
Q Consensus        98 ~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~  173 (374)
                      .+|+.+++++|+    +.|.++|.+| .+|+||||+|+..|+.+.++.|     ++.|++++.+|.+|+||+|+|.+
T Consensus        85 ~~~~~~~v~~Ll----~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A           85 GLGSDKCVRLLA----EAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL-----VELGADIEVEDERGLTALELARE  152 (183)
T ss_dssp             HHTCHHHHHHHH----HTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHH-----HHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHH----HcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHH-----HHcCCCCcCCCCCCCCHHHHHHH
Confidence            999999999999    7889999999 8999999999999987777666     78899999999999999999965

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.84  E-value=4.4e-23  Score=195.30  Aligned_cols=154  Identities=10%  Similarity=-0.025  Sum_probs=121.7

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccc--ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc--ccccCCC
Q 041107           14 RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAA--LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC--EVVDDRG   89 (374)
Q Consensus        14 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~g   89 (374)
                      ...+.+++||||+||+.|+.++|++|+++++...  ...+. .|.||||+||.+|+.+++++|++++++..  +..+.+ 
T Consensus        86 ~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-  163 (376)
T 2aja_A           86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-  163 (376)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-
T ss_pred             HHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhcc-CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-
Confidence            3456677899999999999999999999887321  23455 78899999999999999999999997521  222233 


Q ss_pred             CcHHHHHHHhccHHHHHhHHhhcccchhhhcc--cCCCCCcHHHHHH-hhccccccceeeeccccccccccccccCCCCC
Q 041107           90 WNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK--KDVKGNTPFHVLA-AVCRQSYDARYDIVPWKIAKAHFQATNKQNIS  166 (374)
Q Consensus        90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~--~d~~G~T~LH~A~-~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t  166 (374)
                      +||||+|+.+|+.+++++|+    +.|++++.  +|.+|+||||+|+ ..|+.++++.|     ++.|.+       |.|
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll----~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~L-----l~~ga~-------~~t  227 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLC----ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL-----LDCPVM-------LAY  227 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH----HSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHH-----TTSHHH-------HHH
T ss_pred             CCHHHHHHHCCCHHHHHHHH----HcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHH-----HhCCCc-------cch
Confidence            99999999999999999999    77888877  8999999999999 99998888766     566643       789


Q ss_pred             hHHHHHhCCCccHHHHHHHHHh
Q 041107          167 AEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       167 ~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      |++.|...++.   ++.+++.+
T Consensus       228 aL~~Aa~~g~~---evv~lL~~  246 (376)
T 2aja_A          228 AEIHEFEYGEK---YVNPFIAR  246 (376)
T ss_dssp             HHHCTTTTTTT---THHHHHHH
T ss_pred             HHHHHHHCCCH---HHHHHHHh
Confidence            99999877665   34444444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=5.5e-21  Score=173.93  Aligned_cols=126  Identities=19%  Similarity=0.168  Sum_probs=104.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCccc-----ccccCCCCchHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCc
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKSAA-----LISDEDRKMTALHLAAGR---GDVWMVQEIIDHCPECCEVVDDRGWN   91 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t   91 (374)
                      ..++||.|+..|+.+.++.+++.|.++.     +..|. .|+||||+|+..   |+.+++++|+++|+++ +.+|..|+|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~-~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~T  207 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhcccccccc-CCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCC
Confidence            3468899999999999999998888852     33466 889999999988   8899999999999886 788889999


Q ss_pred             HHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107           92 VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH  156 (374)
Q Consensus        92 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~  156 (374)
                      |||+|+.+|+.+++++|+    +.|+++|.+|.+|+||||+|+..|+.+.++.|     ++.|++
T Consensus       208 pLh~A~~~g~~~~v~~Ll----~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~  263 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLL----RGKASIEIANESGETPLDIAKRLKHEHCEELL-----TQALSG  263 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHH----HcCCCCCCccCCCCCHHHHHHHcCCHHHHHHH-----HHcCCC
Confidence            999999999999999998    77888999999999999999998887666655     566654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=1.4e-21  Score=171.53  Aligned_cols=163  Identities=14%  Similarity=0.030  Sum_probs=123.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHhhcCC--------------cccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107           16 RDRHGWTPLHYAVYLDRCFISKCLLEADK--------------SAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus        16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~--------------~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      .|.++.++.+++.+.|+...+..+.+.+-              ......+. .|.||||+|+..|+.++++.|++.++++
T Consensus        21 ~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   99 (222)
T 3ehr_A           21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE-SIDNPLHEAAKRGNLSWLRECLDNRVGV   99 (222)
T ss_dssp             SCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEE-EESCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccccc-ccccccccccccCcHHHHHHHHhCCCCc
Confidence            34566677777776666543322222110              00123455 7899999999999999999999999996


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccc-hhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAV-RNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT  160 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~  160 (374)
                       +.+|..|+||||+|+.+|+.+++++|+    +. +.++|.+|.+|+||||+|+..|+...++.|     ++.|++++.+
T Consensus       100 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~~~~~  169 (222)
T 3ehr_A          100 -NGLDKAGSTALYWACHGGHKDIVEMLF----TQPNIELNQQNKLGDTALHAAAWKGYADIVQLL-----LAKGARTDLR  169 (222)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHT----TSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHH-----HHHTCCSCCC
T ss_pred             -cccCCCCCCHHHHHHHcCCHHHHHHHH----cCCCCCccccCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCccc
Confidence             888999999999999999999999998    55 889999999999999999999987777666     7889999999


Q ss_pred             cCCCCChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107          161 NKQNISAEHIYRYGFPDLEQEIQELSKADGSG  192 (374)
Q Consensus       161 n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~  192 (374)
                      |.+|+||+++|...+   ..++++.+.+.++.
T Consensus       170 ~~~g~t~l~~A~~~~---~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          170 NIEKKLAFDMATNAA---CASLLKKKQGTDAV  198 (222)
T ss_dssp             CTTSCCHHHHCCSHH---HHHHHC--------
T ss_pred             cCCCCCHHHHhcchh---HHHHHHHHhccchh
Confidence            999999999996533   33666666554443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=2.7e-22  Score=179.06  Aligned_cols=140  Identities=14%  Similarity=0.067  Sum_probs=119.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 041107           18 RHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAM   97 (374)
Q Consensus        18 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   97 (374)
                      ..+.+++..++..|+.+.++.+...+.+.    +. +|.||||+|+..|+.++++.|++ ++++ +.+|..|+||||+|+
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~-~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~   85 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAADV----VS-EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA   85 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHHH----HH-HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHH
T ss_pred             CCCccHHHHHHHcCCCccccccccccccc----cc-CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHH
Confidence            35667777777777766655555444333    45 89999999999999999999999 8875 889999999999999


Q ss_pred             HhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107           98 VSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY  173 (374)
Q Consensus        98 ~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~  173 (374)
                      .+|+.+++++|+    +.|+++|.+| .+|+||||+|+..|+...++.|     ++.|++++.+|.+|+||+|+|..
T Consensus        86 ~~g~~~~v~~Ll----~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~L-----l~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           86 GLGSDKCVRLLA----EAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL-----VELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             HHTCHHHHHHHH----HTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HCCCHHHHHHHH----HcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCCCCCCCcHHHHHHH
Confidence            999999999999    7899999999 8899999999999987777665     78899999999999999999964

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=8.5e-20  Score=166.06  Aligned_cols=170  Identities=16%  Similarity=0.090  Sum_probs=137.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHhhcCC-------ccc-------------cc----------ccCCCCchHHHHHHH
Q 041107           15 ERDRHGWTPLHYAVYLDRCFISKCLLEADK-------SAA-------------LI----------SDEDRKMTALHLAAG   64 (374)
Q Consensus        15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~-------~~~-------------~~----------~d~~~g~tpLh~Aa~   64 (374)
                      ..|..+.++|+.+...|+..+.+++...-+       +..             +.          .+. ...++||.|+.
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~-~~l~~l~~a~~  139 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTA-AKLHSLCEAVK  139 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHH-HHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccc-hhhhhhhhHhh
Confidence            357788899999999999777666543211       110             00          000 22478999999


Q ss_pred             cCCHHHHHHHHHhCCCcc-----ccccCCCCcHHHHHHHh---ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhh
Q 041107           65 RGDVWMVQEIIDHCPECC-----EVVDDRGWNVLHFAMVS---FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAV  136 (374)
Q Consensus        65 ~g~~~~v~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~  136 (374)
                      .|+.+.++.+++.++++.     +..|..|+||||+|+..   ++.+++++|+    +.|+++|.+|.+|+||||+|+..
T Consensus       140 ~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll----~~ga~in~~d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          140 TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV----QNSGNLDKQTGKGSTALHYCCLT  215 (278)
T ss_dssp             TTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH----HHCSCTTCCCTTCCCHHHHHHHT
T ss_pred             hcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHH----HCCCCccccCCCCCCHHHHHHHc
Confidence            999999999999999853     34488999999999999   8999999999    78999999999999999999999


Q ss_pred             ccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCCCCc
Q 041107          137 CRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDG  197 (374)
Q Consensus       137 g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~~~~  197 (374)
                      |+.+.++.|     ++.|++++.+|.+|+||+|+|...+..   ++.+.|.+.++...+.+
T Consensus       216 g~~~~v~~L-----l~~gad~~~~d~~g~tpL~~A~~~~~~---~~v~~Ll~~ga~~~~~~  268 (278)
T 1dcq_A          216 DNAECLKLL-----LRGKASIEIANESGETPLDIAKRLKHE---HCEELLTQALSGRFNSH  268 (278)
T ss_dssp             TCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHTTCCCSS
T ss_pred             CCHHHHHHH-----HHcCCCCCCccCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCCCcc
Confidence            988777765     789999999999999999999888776   78888888777654443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=3.8e-20  Score=139.47  Aligned_cols=93  Identities=26%  Similarity=0.245  Sum_probs=83.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL  133 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A  133 (374)
                      +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+++.+++++|+    +.|++++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL----EAGADVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCCHHHHH
Confidence            4899999999999999999999999996 889999999999999999999999998    78999999999999999999


Q ss_pred             Hhhccccccceeeeccccccccc
Q 041107          134 AAVCRQSYDARYDIVPWKIAKAH  156 (374)
Q Consensus       134 ~~~g~~~~~~~l~L~~~l~~g~~  156 (374)
                      ++.|+.+.++.|     ++.|++
T Consensus        76 ~~~~~~~~~~~L-----l~~ga~   93 (93)
T 1n0q_A           76 ARNGHLEVVKLL-----LEAGAY   93 (93)
T ss_dssp             HHTTCHHHHHHH-----HHTTCC
T ss_pred             HHcCCHHHHHHH-----HHcCCC
Confidence            999987777655     666653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=1.5e-20  Score=147.30  Aligned_cols=109  Identities=20%  Similarity=0.154  Sum_probs=98.9

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCc
Q 041107           49 ISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNT  128 (374)
Q Consensus        49 ~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T  128 (374)
                      .+|+ +|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..++.+++++|+    +.|.+++.+|.+|+|
T Consensus         4 ~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~d~~g~t   77 (115)
T 2l6b_A            4 WGSK-DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLL----AKGADVNARSKDGNT   77 (115)
T ss_dssp             CCSC-SSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHT----TTTCCTTCCCTTCCC
T ss_pred             ccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHH----HcCCCCcccCCCCCC
Confidence            4677 9999999999999999999999999996 888999999999999999999999998    778999999999999


Q ss_pred             HHHHHHhhccccccceeeeccccccccccccccCCCCChH
Q 041107          129 PFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAE  168 (374)
Q Consensus       129 ~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l  168 (374)
                      |||+|+..|+.+.++.|     ++.|+++|..+..|.+|.
T Consensus        78 pl~~A~~~~~~~~~~~L-----l~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           78 PEHLAKKNGHHEIVKLL-----DAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTHHHHTTTCHHHHHHH-----HTTSSSHHHHSCCCC---
T ss_pred             HHHHHHHCCCHHHHHHH-----HHcCCCCCcCCccccccc
Confidence            99999999987777665     899999999999999884

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.78  E-value=3.3e-21  Score=182.45  Aligned_cols=151  Identities=11%  Similarity=0.040  Sum_probs=117.6

Q ss_pred             hHHHHhhCCc--cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcc--cccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 041107            2 PLLLLDKKKS--LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSA--ALISDEDRKMTALHLAAGRGDVWMVQEIIDH   77 (374)
Q Consensus         2 ~~~lL~~~~~--~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~   77 (374)
                      ++.|++.+..  ..+..|..|.||||+||+.|+.++|++|+++|++.  .+..+. + +||||+||..|+.+++++|+++
T Consensus       108 v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G~~eiv~~Ll~~  185 (376)
T 2aja_A          108 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENGHLHVLNRLCEL  185 (376)
T ss_dssp             HHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCCCHHHHHHHHHc
Confidence            4566665431  22344557889999999999999999999999763  133444 4 9999999999999999999999


Q ss_pred             CCCcccc--ccCCCCcHHHHHH-HhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccc
Q 041107           78 CPECCEV--VDDRGWNVLHFAM-VSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAK  154 (374)
Q Consensus        78 ~~~~~~~--~d~~g~t~Lh~A~-~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g  154 (374)
                      |+++ ..  .|.+|+||||+|+ .+|+.+++++|+    +.|+       .|+||||+|+..|+.++++.|     ++.|
T Consensus       186 ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll----~~ga-------~~~taL~~Aa~~g~~evv~lL-----~~~g  248 (376)
T 2aja_A          186 APTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLL----DCPV-------MLAYAEIHEFEYGEKYVNPFI-----ARHV  248 (376)
T ss_dssp             CGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHT----TSHH-------HHHHHHHCTTTTTTTTHHHHH-----HHHH
T ss_pred             CCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHH----hCCC-------ccchHHHHHHHCCCHHHHHHH-----HhcC
Confidence            9986 44  7889999999999 999999999998    4443       289999999999998766655     7889


Q ss_pred             cccccccCCCCChHHHHHhCC
Q 041107          155 AHFQATNKQNISAEHIYRYGF  175 (374)
Q Consensus       155 ~~~~~~n~~g~t~l~~a~~~~  175 (374)
                      ++++..+.    +++.|...+
T Consensus       249 a~~~~~~~----~l~~A~~~g  265 (376)
T 2aja_A          249 NRLKEMHD----AFKLSNPDG  265 (376)
T ss_dssp             HHHHHHHT----TTTTTSSSS
T ss_pred             cccccccH----HHHHHHHCC
Confidence            88877654    455554433

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=4.5e-19  Score=137.99  Aligned_cols=98  Identities=15%  Similarity=0.069  Sum_probs=84.0

Q ss_pred             hCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 041107            8 KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDD   87 (374)
Q Consensus         8 ~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   87 (374)
                      ..+......|.+|.||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+|.
T Consensus        12 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~   88 (110)
T 2zgd_A           12 GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDK   88 (110)
T ss_dssp             C---------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             CCCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccc
Confidence            446667788999999999999999999999999999998 88898 9999999999999999999999999986 88899


Q ss_pred             CCCcHHHHHHHhccHHHHHhH
Q 041107           88 RGWNVLHFAMVSFYARDLKHL  108 (374)
Q Consensus        88 ~g~t~Lh~A~~~~~~~~~~~L  108 (374)
                      .|+||||+|+.+++.+++++|
T Consensus        89 ~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHh
Confidence            999999999999999999876

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=1.3e-18  Score=164.00  Aligned_cols=131  Identities=15%  Similarity=0.060  Sum_probs=97.9

Q ss_pred             hHHHHhhCCccccccC--CCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCC
Q 041107            2 PLLLLDKKKSLTRERD--RHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP   79 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d--~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   79 (374)
                      ++.|| ..+.+++..|  ..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++|+
T Consensus       216 v~~LL-~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~-~G~TpLh~A~~~g~~~~v~~LL~~Ga  292 (368)
T 3jue_A          216 MADAL-AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADS-AGRGPLHHATILGHTGLACLFLKRGA  292 (368)
T ss_dssp             HHHHH-HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHH-HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCcHHHHHHHHHCcC
Confidence            34455 4567788888  88999999999999999999999999999 89999 99999999999999999999999999


Q ss_pred             CccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhc
Q 041107           80 ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC  137 (374)
Q Consensus        80 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g  137 (374)
                      ++ +..|.+|+||||+|+..++.+++++|++.. .........+..+.|+|+++....
T Consensus       293 d~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~-~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          293 DL-GARDSEGRDPLTIAMETANADIVTLLRLAK-MREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-C-----------------------
T ss_pred             CC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCcccccccCCCCCCHHHHHHHHH
Confidence            96 889999999999999999999999998432 233455566788899999887654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=2.7e-17  Score=127.79  Aligned_cols=90  Identities=18%  Similarity=0.108  Sum_probs=80.1

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCC
Q 041107           48 LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGN  127 (374)
Q Consensus        48 ~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~  127 (374)
                      ...|. +|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+++.+++++|+    +.|++++.+|.+|+
T Consensus        18 ~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~   91 (110)
T 2zgd_A           18 SHMGS-DLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLL----EAGADVXAQDKFGK   91 (110)
T ss_dssp             ----C-CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSC
T ss_pred             cccCC-ccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccccCCC
Confidence            45566 9999999999999999999999999986 788999999999999999999999999    77899999999999


Q ss_pred             cHHHHHHhhccccccc
Q 041107          128 TPFHVLAAVCRQSYDA  143 (374)
Q Consensus       128 T~LH~A~~~g~~~~~~  143 (374)
                      ||||+|+..|+.+.++
T Consensus        92 tpl~~A~~~~~~~~~~  107 (110)
T 2zgd_A           92 TAFDISIDNGNEDLAE  107 (110)
T ss_dssp             CHHHHHHHHTCHHHHH
T ss_pred             cHHHHHHHcCCHHHHH
Confidence            9999999998755543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	374
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.004
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 9e-10
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 17/166 (10%)

Query: 16  RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII 75
            ++ G TPLH         ++  L++      + +      T LH+A+  G++ +V + +
Sbjct: 260 GNKSGLTPLHLVAQEGHVPVADVLIK--HGVMVDATTRMGYTPLHVASHYGNIKLV-KFL 316

Query: 76  DHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAA 135
                        G++ LH A    +   +  L+    +      +    G TP   +A 
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN----EVSSDGTTPLA-IAK 371

Query: 136 VCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQE 181
                      +    + K     T+   +     +R  FP+   E
Sbjct: 372 RLGY-----ISVT--DVLKVVTDETS--FVLVSDKHRMSFPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 6e-09
 Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 7/168 (4%)

Query: 56  MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAV 115
           +T LH+A+  G + +V+ ++        V + +    LH A  + +    K+L+     V
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 116 RNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGF 175
                 K     TP H  AA    +   +  +           A +     A        
Sbjct: 60  N----AKAKDDQTPLH-CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 114

Query: 176 PDLEQEIQ-ELSKADGSGQYPDGVVKMNKNKKIANYSFWKDLDEDVIG 222
                E +   +     G  P  V       ++A     +D   +  G
Sbjct: 115 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 162

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 9e-09
 Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 17/215 (7%)

Query: 22  TPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81
           TPLH A ++    I K LL+  + A+      +  T LH+AA  G   + + ++ +  + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ--RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK- 58

Query: 82  CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSY 141
                      LH A    +   +K L++            +    T             
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNA---------NPNLATTAGHTPLHIAARE 109

Query: 142 DARYDIVPWKIAKAHFQATNKQNISAEHI-YRYGFPDLEQEIQE----LSKADGSGQYPD 196
                ++     +A      K+  +  H+  +YG   + + + E     + A  +G  P 
Sbjct: 110 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL 169

Query: 197 GVVKMNKNKKIANYSFWKDLDEDVIGMKEASESHL 231
            V   + N  I      +            +  H+
Sbjct: 170 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 1e-07
 Identities = 34/168 (20%), Positives = 54/168 (32%), Gaps = 15/168 (8%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
            LL +  S     +    TPLH A       ++K LL+    A + +      T LH AA
Sbjct: 18  NLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQTPLHCAA 74

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD 123
             G   MV+ ++++                H  +           V              
Sbjct: 75  RIGHTNMVKLLLENNANPN-----LATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 129

Query: 124 VKGNTPFHVLAAVCRQSYDARYDIVPWKIAK-AHFQATNKQNISAEHI 170
            KG TP HV A         +  +    + + AH  A  K  ++  H+
Sbjct: 130 KKGFTPLHVAA------KYGKVRVAELLLERDAHPNAAGKNGLTPLHV 171

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAG 64
           LL ++ +      ++G TPLH AV+ +   I K LL   +  +  S      T LH+AA 
Sbjct: 150 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP--RGGSPHSPAWNGYTPLHIAAK 207

Query: 65  RGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDV 124
           +  V + + ++ +          +G   LH A           +V    + +      + 
Sbjct: 208 QNQVEVARSLLQYGGSANA-ESVQGVTPLHLAA----QEGHAEMVALLLSKQANGNLGNK 262

Query: 125 KGNTPFH 131
            G TP H
Sbjct: 263 SGLTPLH 269

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQ 72
            + + G++PLH A       I   LL+     A  ++      T L +A   G + +  
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNG---ASPNEVSSDGTTPLAIAKRLGYISVTD 380

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 8/131 (6%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQEII 75
              G T LH AV          LL        +  ++    TALHLAA  G+   V+++ 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 76  DHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRN------LIFKKDVKGNTP 129
                           + H A           L+   P+         L   +D   +T 
Sbjct: 66  AAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 130 FHVLAAVCRQS 140
               A   + +
Sbjct: 125 HAPAAVDSQPN 135

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 33/221 (14%), Positives = 55/221 (24%), Gaps = 18/221 (8%)

Query: 3   LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
           LL           ++  G T LH A  L      + L  A      +  E    TALHLA
Sbjct: 28  LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTALHLA 85

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDD---------RGWNVLHFAMVSFYARDLKHLVDKYP 113
                      ++   P       D                 A V            +  
Sbjct: 86  CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145

Query: 114 AVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY 173
             R  +  ++  G+TP HV              ++    A  +                 
Sbjct: 146 DWRLQLEAENYDGHTPLHV---AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 174 GFPDLEQEIQE----LSKADGSGQYPDGVVKMNKNKKIANY 210
               + + + +     +     G+ P G   +  N  +A  
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 4e-08
 Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLA 62
            ++ K+    +       +  +      +  I + L      A +++ +D    T L++A
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96
           A  G++ +V  ++D+  +   + +  G   + F 
Sbjct: 267 ARLGNISIVDALLDYGAD-PFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 25/206 (12%), Positives = 54/206 (26%), Gaps = 4/206 (1%)

Query: 1   VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALH 60
           +P  L +   +   E         H +       ++        +  +  DE    T LH
Sbjct: 54  MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEH-GNTPLH 112

Query: 61  LAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIF 120
                 ++ +V+ ++ H        D+ G + L  A+ S    D          +   + 
Sbjct: 113 WLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 171

Query: 121 KKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQ 180
            +D    T  H    +             + +         KQN   +            
Sbjct: 172 LEDSMNRTILH--HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 181 EIQELSKADGSGQYPDGVVKMNKNKK 206
           +  E   +         ++    N +
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQ 255

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 3   LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALH 60
           L L     ++   +D +G T L+ A  L    I   LL+  AD   A        +  + 
Sbjct: 242 LDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA----NKSGLRPVD 297

Query: 61  LAAG 64
             AG
Sbjct: 298 FGAG 301

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 5e-08
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
             +++G TPLHYA   +R  I+  LLE    A   + +  + TA+H AA +G++ M   I
Sbjct: 98  AVNQNGCTPLHYAASKNRHEIAVMLLE--GGANPDAKDHYEATAMHRAAAKGNLKM-IHI 154

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
           + +      + D  G   LH A       + K LV +  ++      ++ +  TP  V
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY----IENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 30/213 (14%), Positives = 62/213 (29%), Gaps = 45/213 (21%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFIS---------------------------- 36
            +   KSL    D+   T LH+A       I                             
Sbjct: 22  SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 81

Query: 37  ----KCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNV 92
                  L    +     +++   T LH AA +    +   +++      +  D      
Sbjct: 82  RDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATA 139

Query: 93  LHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKI 152
           +H A      + +  L+    +       +D +GNTP            + R +     +
Sbjct: 140 MHRAAAKGNLKMIHILLYYKAST----NIQDTEGNTPL------HLACDEERVEEAKLLV 189

Query: 153 AK-AHFQATNKQNISAEHIYRYGFPDLEQEIQE 184
           ++ A     NK+  +   + + G   + + + E
Sbjct: 190 SQGASIYIENKEEKTPLQVAKGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
           +LL+   +    +D +  T +H A       +   LL    S  +   E    T LHLA 
Sbjct: 121 MLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG--NTPLHLAC 177

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96
               V   + ++        + +      L  A
Sbjct: 178 DEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA 209

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 7e-08
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLE---ADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
            + G T L  A       + K LL+   AD +A      +  + AL  +       +   
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 74  IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL 133
           ++DH  +   V  +RG   L  A+   +   ++ L+++     N     D  G T    L
Sbjct: 205 LLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN---DTDSDGKTALL-L 259

Query: 134 AA 135
           A 
Sbjct: 260 AV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 16/164 (9%)

Query: 17  DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK--------MTALHLAAGRGDV 68
           D +G+T    A    +    K L +   +  L                TAL  AA +G V
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 69  WMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNT 128
            +++ ++D         D+ G N L  A++S    D++ +          +  +  +G T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

Query: 129 PFHVLAAVCRQSYDARYDIVPWKIAK--AHFQATNKQNISAEHI 170
           P  +              +V   + +       T+    +A  +
Sbjct: 222 PLIL------AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 9e-06
 Identities = 26/203 (12%), Positives = 61/203 (30%), Gaps = 6/203 (2%)

Query: 22  TPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP 79
             L  AV  +   + + LLE  A+ +     +E+   T LH A       +V+ ++ H  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQ---EEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 80  ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQ 139
           +      +     L  A+          L           +          +      + 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 140 SYDARYDIVPWKIAKAHFQATNKQNISAEHIY-RYGFPDLEQEIQELSKADGSGQYPDGV 198
            Y    ++   +  K   +   K   +A       G  ++ + + +   AD +     G 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 199 VKMNKNKKIANYSFWKDLDEDVI 221
             +      ++ S  + +   ++
Sbjct: 184 NALIHALLSSDDSDVEAITHLLL 206

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 50/254 (19%), Positives = 76/254 (29%), Gaps = 52/254 (20%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLL----------------------- 40
            LL+   ++  + +  GWTPLH AV + R  I + LL                       
Sbjct: 23  QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA 82

Query: 41  --------EADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP---------ECCE 83
                      K A +   +    TA   AA  G V  ++ +              E  E
Sbjct: 83  GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142

Query: 84  VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDA 143
            +   G   L  A    +   LK L+D+  A  N     D  G        A+       
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVN---ACDNMGRNALIH--ALLSSDDSD 197

Query: 144 RYDIVPWKIAK-AHFQATNKQNISAEHI-YRYGFPD-----LEQEIQELSKADGSGQYPD 196
              I    +   A      ++  +   +             LEQE  E++  D  G+   
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

Query: 197 GVVKMNKNKKIANY 210
            +    K KKIA  
Sbjct: 258 LLAVELKLKKIAEL 271

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 2/110 (1%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEA--DKSAALISDEDRKMTALHL 61
           +LLD+  +     D  G   L +A+        + +     D  A +    +R  T L L
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

Query: 62  AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDK 111
           A  +  + +VQ +++         D  G   L  A+     +  + L  +
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 24/190 (12%), Positives = 45/190 (23%), Gaps = 2/190 (1%)

Query: 22  TPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81
            PLH A   +  F  + LL +  S  L  D+D     LH +       +   ++      
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 82  CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSY 141
                        F +                 ++  + K   +G T  H+         
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 142 DAR-YDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDGVVK 200
                +       K  F        ++    +            ++  D  G  P     
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 201 MNKNKKIANY 210
              +   A  
Sbjct: 181 AEGHGDAAVL 190

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 6/168 (3%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
            LL  K SL  ++D+ G  PLH++V      I+  LL   ++  L    D         A
Sbjct: 18  ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 77

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD 123
                  V + +   P   ++       V    +     +    +          +  KD
Sbjct: 78  CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL--AVGKKWFEVSQFLIENGASVRIKD 135

Query: 124 VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY 171
                P H            +   +   + K+     +KQ  +     
Sbjct: 136 KFNQIPLH----RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 56  MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAV 115
              LH AA  G + +++ +           D +GW  L  A+   +      LV+KY A 
Sbjct: 139 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 198

Query: 116 RNLIFKKDVKGNTPFHV 132
            +L    D KG     V
Sbjct: 199 YDL---VDNKGAKAEDV 212

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 6e-07
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 15  ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
              + G T LH A       + K L        +   +    T LH AA  G     + +
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLL--IQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 75  IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI 119
           +++  +  E V+  G      A       D+   +++    +NL+
Sbjct: 252 VENLCD-MEAVNKVGQTAFDVA-----DEDILGYLEELQKKQNLL 290

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 2/111 (1%)

Query: 3   LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
           L LL     + +      +     A       +   L E   +  +   +     A  LA
Sbjct: 109 LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 168

Query: 63  AGRGDVWMVQEIIDHCPEC--CEVVDDRGWNVLHFAMVSFYARDLKHLVDK 111
           A  G + ++  + +  P      +  +  +     A+   +   +  L+D 
Sbjct: 169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 219

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 10/75 (13%), Positives = 16/75 (21%), Gaps = 3/75 (4%)

Query: 6   LDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKM---TALHLA 62
            D        +  +    L            + LL      AL             L LA
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

Query: 63  AGRGDVWMVQEIIDH 77
              G+      ++  
Sbjct: 325 LRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 43  DKSAALISDEDRKMTALHLAAGRGDVWMVQ--EIIDHCPECCEVVDDRGWNVLHFAMVSF 100
              +       +      +AA  G    +    ++    E  +V+    +     A  + 
Sbjct: 78  QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 137

Query: 101 YARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC 137
           +   L  L +  P    ++     +    F + A   
Sbjct: 138 HLHVLNRLCELAPT--EIMAMIQAENYHAFRLAAENG 172

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 8/157 (5%)

Query: 1   VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTAL 59
           +  L       +        +     A       +   L E   + A    +        
Sbjct: 142 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 201

Query: 60  HLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI 119
             A GRG   ++  ++D  P      +   +      +  F AR +  L + + A +   
Sbjct: 202 WAAVGRGHHNVINFLLDC-PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 260

Query: 120 FK--KDVKGNTP----FHVLAAVCRQSYDARYDIVPW 150
                D+   +     F++L  + R++ +   D + +
Sbjct: 261 PDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRF 297

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 16  RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQEI 74
           +D  G TP+  A    R  +   L++     A +   D    TA  LA       +V +I
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQG---ASVEAVDATDHTARQLAQANNHHNIV-DI 272

Query: 75  IDHC 78
            D C
Sbjct: 273 FDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 24/210 (11%), Positives = 50/210 (23%), Gaps = 21/210 (10%)

Query: 22  TPLHYAV-YLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE 80
           +P+           I++ +         I D     T LH  A        +++I H  +
Sbjct: 2   SPIKLHTEAAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 81  CC-------EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFH-- 131
            C         +D      L  A+++   R + +L+            +    +      
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 132 --------VLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQ 183
                   + +   +   +         +          Q  SA+ +   G         
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 178

Query: 184 ELSKADGSGQYPDGVVKMNKNKKIANYSFW 213
                   G+          N  I  Y   
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVG 208

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 56  MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAV 115
            TALH AA   ++ +V+ ++       +  D+ G   +  A        + +L+ +  +V
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 116 RNLIFKKDVKGNTPFHVLAA 135
                  D   +T    LA 
Sbjct: 248 E----AVDATDHTARQ-LAQ 262

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 36/207 (17%), Positives = 54/207 (26%), Gaps = 6/207 (2%)

Query: 4   LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
            LL +   L    D+ G T LH A    R   +K LL+A   A    +  R      +AA
Sbjct: 7   DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA 66

Query: 64  GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD 123
               V+ +                 G   L  A        ++ L+     +       D
Sbjct: 67  DAMGVFQILLRNRATNLNAR--MHDGTTPLILAARLAIEGMVEDLITADADIN----AAD 120

Query: 124 VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQ 183
             G T  H  AAV          +          +      ++A          L     
Sbjct: 121 NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA 180

Query: 184 ELSKADGSGQYPDGVVKMNKNKKIANY 210
                D   + P  V     +  I   
Sbjct: 181 NREITDHMDRLPRDVASERLHHDIVRL 207

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 56 MTALHLAAGRGDVWMVQEIIDHCPEC---CEVVDDRGWNVLHFAM 97
           T LH+A  +G++  V  +++   +     ++ ++     LH A+
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 48

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 24/193 (12%), Positives = 46/193 (23%), Gaps = 2/193 (1%)

Query: 20  GWTPLHYAVYLDRCFISKCLLEADKSA-ALISDEDRK-MTALHLAAGRGDVWMVQEIIDH 77
           G TPLH AV          L+   +     +   +    T LHLA       +V+ ++  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 78  CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC 137
                 +                       L    P   +L  +           +   C
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 138 RQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDG 197
           +++     +      A       +    + E+        L Q    ++    SG     
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 182

Query: 198 VVKMNKNKKIANY 210
                    +   
Sbjct: 183 SASGRGLLPLVRT 195

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 5   LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAG 64
           LL++   +     + G +PL +AV  +   + + LL+   +             LH A+G
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA--LHSASG 186

Query: 65  RGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96
           RG + +V+ ++    +   + +      L  A
Sbjct: 187 RGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVA 217

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 56 MTALHLAAGRGDVWMVQEIIDHCPECCEVV---DDRGWNVLHFAM 97
           + LHLA    +  +  E+I         +   ++     LH A+
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV 47

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 27/196 (13%), Positives = 58/196 (29%), Gaps = 6/196 (3%)

Query: 20  GWTPLHYAVYLDRCFISKCLLEADKSA-ALISDEDRK-MTALHLAAGRGDVWMVQEIIDH 77
           G + LH A+  +   ++  ++   K   A ++ ++    T LH  A   +   + E +  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLH-LAVITNQPEIAEALLG 60

Query: 78  CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC 137
                E+ D RG   LH A        +  L             K    N    +  A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 138 RQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQ---ELSKADGSGQY 194
                    +V         +  N +      +       +   ++   ++++    G  
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 195 PDGVVKMNKNKKIANY 210
           P  +     + +I   
Sbjct: 181 PYQLTWGRPSTRIQQQ 196

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 19  HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC 78
           +G T LH AV L    +   LL+       ++ +    +   L  GR    + Q++    
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY--SPYQLTWGRPSTRIQQQLGQLT 201

Query: 79  PECCEVVDD 87
            E  +++ +
Sbjct: 202 LENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 8/186 (4%)

Query: 3   LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
           +  +    +    ++    TPLH AV  ++  I++ LL A     L          L   
Sbjct: 22  IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 81

Query: 63  AGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKK 122
            G      V       P    ++    +N      ++     L  +        ++  ++
Sbjct: 82  QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 141

Query: 123 DVKGNTPFHVLAAVCRQSYDARYDIVPWKI-AKAHFQATNKQNISAEHI-YRYGFPDLEQ 180
              G T  H+             D+V   +   A       Q  S   + +      ++Q
Sbjct: 142 PCNGRTALHL------AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ 195

Query: 181 EIQELS 186
           ++ +L+
Sbjct: 196 QLGQLT 201

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 21/141 (14%), Positives = 39/141 (27%), Gaps = 12/141 (8%)

Query: 50  SDEDRKMTALHLAAGRGDVWMVQEIIDH-----CPECCEVVDDRGWNVLHFAMVSFYARD 104
           +D   K+ +L  A    D++ + +                  +     LH   V    R 
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHL-AVRSVDRT 59

Query: 105 LKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQN 164
             H+VD            ++   T     A       D    +      KA  +  N+  
Sbjct: 60  SLHIVDFLVQ-----NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG 114

Query: 165 ISAEHI-YRYGFPDLEQEIQE 184
            +   I  R      E+ + +
Sbjct: 115 ETPLDIAKRLKHEHCEELLTQ 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	374
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.83
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.74
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.73

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=231.67  Aligned_cols=160  Identities=19%  Similarity=0.157  Sum_probs=130.1

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhc---------------------------------CCcccc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEA---------------------------------DKSAAL   48 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~---------------------------------~~~~~~   48 (374)
                      ++++|...+.+++.+|.+|+||||+||..|+.+++++|++.                                 ++++ +
T Consensus        19 v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~   97 (223)
T d1uoha_          19 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-N   97 (223)
T ss_dssp             HHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-T
T ss_pred             HHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCcee-E
Confidence            57889999999999999999999999999987776666554                                 4444 5


Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCc
Q 041107           49 ISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNT  128 (374)
Q Consensus        49 ~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T  128 (374)
                      .+|. +|+||||+|+..|+.+++++|+++|.++ +.+|..|.||||+|+..++.+++++|.    ..+.++|.+|.+|+|
T Consensus        98 ~~d~-~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~----~~~~~i~~~d~~g~T  171 (223)
T d1uoha_          98 AVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILL----YYKASTNIQDTEGNT  171 (223)
T ss_dssp             CCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCSCCCCTTCCC
T ss_pred             eeCC-CCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhc----cccceeeeccCCCCc
Confidence            6677 7888888888888888888888888775 677888888888888888888888776    667788888888888


Q ss_pred             HHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107          129 PFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY  173 (374)
Q Consensus       129 ~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~  173 (374)
                      |||+|++.|+.+.++.|     ++.|+|++.+|.+|+||+|+|+.
T Consensus       172 pL~~Aa~~g~~~~v~~L-----L~~Gad~~~~d~~g~tpl~~A~~  211 (223)
T d1uoha_         172 PLHLACDEERVEEAKLL-----VSQGASIYIENKEEKTPLQVAKG  211 (223)
T ss_dssp             HHHHHHHTTCHHHHHHH-----HHTTCCSCCCCTTSCCHHHHCCT
T ss_pred             eeccccccCcHHHHHHH-----HHCCCCCCCCCCCCCCHHHHHHC
Confidence            88888888877766655     67888888888888888888854

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-28  Score=219.18  Aligned_cols=177  Identities=21%  Similarity=0.129  Sum_probs=151.1

Q ss_pred             hHHHHhhC--CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCC
Q 041107            2 PLLLLDKK--KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP   79 (374)
Q Consensus         2 ~~~lL~~~--~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   79 (374)
                      ++.||+.+  +..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. +|+||||+|+..|+.++++.|++...
T Consensus        25 v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~-~g~tpL~~A~~~~~~~~~~~Ll~~~~  102 (255)
T d1oy3d_          25 LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAER-GGHTALHLACRVRAHTCACVLLQPRP  102 (255)
T ss_dssp             HHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCT-TSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-ccccc-ccchhhhhhhccCchHHHHHHHhhcc
Confidence            56666653  4568889999999999999999999999999999998 88998 99999999999999999999976542


Q ss_pred             C----------------------------------------------ccccccCCCCcHHHHHHHhccHHHHHhHHhhcc
Q 041107           80 E----------------------------------------------CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYP  113 (374)
Q Consensus        80 ~----------------------------------------------~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  113 (374)
                      .                                              ..+.+|.+|+||||+|+.+++.+++++|+    
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll----  178 (255)
T d1oy3d_         103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR----  178 (255)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH----
T ss_pred             chhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchh----
Confidence            1                                              01346788999999999999999999998    


Q ss_pred             cchhhhcc-cCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107          114 AVRNLIFK-KDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSG  192 (374)
Q Consensus       114 ~~~~~~n~-~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~  192 (374)
                      +.+.+.+. ++..|+||||+|++.|+.+.++.|     ++.|++++.+|+.|+||+|+|...+..   ++.++|.+.|+.
T Consensus       179 ~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~L-----l~~gadin~~d~~g~t~L~~A~~~~~~---~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELL-----LKAGADPTARMYGGRTPLGSALLRPNP---ILARLLRAHGAP  250 (255)
T ss_dssp             HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHTSSCH---HHHHHHHHTTCC
T ss_pred             cccccccccccccccccccccccccHHHHHHHH-----HHCCCCCCCCCCCCCCHHHHHHHCCCH---HHHHHHHHcCCC
Confidence            56665554 568899999999999987777655     788999999999999999999888776   889999998885

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.5e-27  Score=205.90  Aligned_cols=174  Identities=20%  Similarity=0.206  Sum_probs=129.4

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccc--ccccCCCCchHHHH------------------
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAA--LISDEDRKMTALHL------------------   61 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~~g~tpLh~------------------   61 (374)
                      +++||+.++.+++.+|.+|+||||+|+..|+.+++++|+++|+++.  ...+. .|.+|+|+                  
T Consensus        16 v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (229)
T d1ixva_          16 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-SGWTPFHIACSVGNLEVVKSLYDRPL   94 (229)
T ss_dssp             HHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHSSSS
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccc-cccccccccccccccccccccccccc
Confidence            5788999999999999999999999999999999999999987761  12233 45555554                  


Q ss_pred             -----------------HHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccch-hhhcccC
Q 041107           62 -----------------AAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVR-NLIFKKD  123 (374)
Q Consensus        62 -----------------Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d  123 (374)
                                       ++..++.++++.|++.+.+. ...|..|+||||+|+.+++.+++++|+    +.+ .++|.+|
T Consensus        95 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll----~~~~~~in~~d  169 (229)
T d1ixva_          95 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLC----GLGKSAVNWQD  169 (229)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH----TTTCCCSCCCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccccccc----ccccccccccc
Confidence                             44455555555555555553 556778888888888888888888887    333 5778888


Q ss_pred             CCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107          124 VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS  191 (374)
Q Consensus       124 ~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~  191 (374)
                      .+|+||||+|+..|+.+.++.| +   ...|+|++.+|++|+||+|+|..      .++.++|.+.|+
T Consensus       170 ~~g~TpLh~A~~~~~~~~v~~L-l---~~~gad~~~~d~~g~t~l~~A~~------~~~~~~Ll~~g~  227 (229)
T d1ixva_         170 KQGWTPLFHALAEGHGDAAVLL-V---EKYGAEYDLVDNKGAKAEDVALN------EQVKKFFLNNVV  227 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHH-H---HHHCCCSCCCCTTSCCTGGGCSC------HHHHHHHHHHCC
T ss_pred             cccCCchhhhcccccHHHHHHH-H---HhcCCCCCCcCCCCCCHHHHHhh------HHHHHHHHHcCC
Confidence            8888888888888877777665 3   34588888888888888888742      256666666554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=8.8e-27  Score=206.68  Aligned_cols=169  Identities=21%  Similarity=0.140  Sum_probs=143.2

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcc--cccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH
Q 041107           15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSA--ALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNV   92 (374)
Q Consensus        15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~   92 (374)
                      ..|++|+||||+||+.|+.+++++|++++++.  .+.+|. .|+||||+|+..|+.+++++|++.|+++ +..|.+|+||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tp   81 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA   81 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCC-CCCCccchHHhhcccccccccccccccc-cccccccchh
Confidence            45789999999999999999999999987663  256777 9999999999999999999999999996 8899999999


Q ss_pred             HHHHHHhccHHHHHhHHhhc-------------------------------------------ccchhhhcccCCCCCcH
Q 041107           93 LHFAMVSFYARDLKHLVDKY-------------------------------------------PAVRNLIFKKDVKGNTP  129 (374)
Q Consensus        93 Lh~A~~~~~~~~~~~Ll~~~-------------------------------------------~~~~~~~n~~d~~G~T~  129 (374)
                      ||+|+..++.++++++++..                                           ...+..++.+|.+|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            99999999999998886421                                           12345667889999999


Q ss_pred             HHHHHhhccccccceeeecccccccccccc-ccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          130 FHVLAAVCRQSYDARYDIVPWKIAKAHFQA-TNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       130 LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~-~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      ||+|++.++.+.++.|     ++.+.+.+. .+..|.||+|+|...+..   +++++|.+.++..
T Consensus       162 Lh~A~~~~~~~~v~~L-----l~~~~~~~~~~~~~g~TpL~~A~~~~~~---~~v~~Ll~~gadi  218 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLL-----RDAGADLNKPEPTCGRTPLHLAVEAQAA---SVLELLLKAGADP  218 (255)
T ss_dssp             HHHHHHTTCHHHHHHH-----HHHTCCTTCCCTTTCCCHHHHHHHTTCH---HHHHHHHHTTCCT
T ss_pred             ccccccccccccccch-----hcccccccccccccccccccccccccHH---HHHHHHHHCCCCC
Confidence            9999999987777655     788888775 467899999999887775   7888888876553

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.8e-27  Score=203.49  Aligned_cols=169  Identities=21%  Similarity=0.195  Sum_probs=145.7

Q ss_pred             hhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc-----
Q 041107            7 DKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC-----   81 (374)
Q Consensus         7 ~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~-----   81 (374)
                      ...+..+|.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.++++.|++.+...     
T Consensus        26 ~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~-~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  103 (221)
T d1iknd_          26 KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI  103 (221)
T ss_dssp             ---CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT-TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG
T ss_pred             HhCCCCcccCCCCCCccccccccccccccccccccccccc-ccccc-ccccccccccccccccccchhhhhccccccccc
Confidence            3457789999999999999999999999999999999999 89999 9999999999999999999999976542     


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT  160 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~  160 (374)
                      .......|.||||.|+..++.+.+++++    ..+..++.++ .+|+||||+|++.|+.+.++.|     ++.|+|++.+
T Consensus       104 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~----~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~L-----l~~gad~~~~  174 (221)
T d1iknd_         104 LKATNYNGHTCLHLASIHGYLGIVELLV----SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL-----LKCGADVNRV  174 (221)
T ss_dssp             GGCCCTTCCCHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH-----HTTTCCSCCC
T ss_pred             ccccccccchhhhHHhhcCChhheeeec----ccCcccccccccCCCCccccccccccHHHHHHH-----HhcCCccccc
Confidence            2334567899999999999999999998    6677777665 6799999999999998777766     8899999999


Q ss_pred             cCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107          161 NKQNISAEHIYRYGFPDLEQEIQELSKAD  189 (374)
Q Consensus       161 n~~g~t~l~~a~~~~~~~~~~i~~~l~~~  189 (374)
                      |.+|+||+|+|...+..   ++.+.+.+.
T Consensus       175 ~~~G~tpl~~A~~~~~~---~~~~~l~~~  200 (221)
T d1iknd_         175 TYQGYSPYQLTWGRPST---RIQQQLGQL  200 (221)
T ss_dssp             CTTCCCGGGGCTTSSCH---HHHHHHHTT
T ss_pred             CCCCCCHHHHHHHCCCH---HHHHHHHHc
Confidence            99999999999877665   666666664

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.6e-26  Score=198.76  Aligned_cols=170  Identities=22%  Similarity=0.184  Sum_probs=144.2

Q ss_pred             ChHHHHhhCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHH---------
Q 041107            1 VPLLLLDKKKSLTRE-RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWM---------   70 (374)
Q Consensus         1 i~~~lL~~~~~~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~---------   70 (374)
                      |++.|++++. ++|. .|.+|.||||+||+.|+.+++++|++.++++ +.++. .+.++++.++..++.+.         
T Consensus         4 ~v~~Ll~~g~-din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           4 VISDLLAQGA-ELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDN-TGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHCCC-CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccc-cccccccccccccccccccccccccc
Confidence            4677777765 5776 6899999999999999999999999999998 88888 88888888777766553         


Q ss_pred             -------------------------HHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCC
Q 041107           71 -------------------------VQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVK  125 (374)
Q Consensus        71 -------------------------v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~  125 (374)
                                               .+.|.+.+.++ +.+|..|+||||.++.++..++++.++    ..+.++|.+|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~----~~~~~~~~~d~~  155 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILL----MHHANRDAQDDK  155 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTT
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeec----cccccccccccc
Confidence                                     44445555554 678899999999999999999999988    777889999999


Q ss_pred             CCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHH
Q 041107          126 GNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELS  186 (374)
Q Consensus       126 G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l  186 (374)
                      |+||||+|+..|+.+.++.|     ++.|+|++..|.+|+||+|+|.+.++.   +++++|
T Consensus       156 g~TpL~~A~~~g~~~~v~~L-----l~~gad~n~~d~~g~Tpl~~A~~~~~~---~iv~lL  208 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKAL-----LDNFANREITDHMDRLPRDVASERLHH---DIVRLL  208 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHH
T ss_pred             cccccchhccccHHHHHHHH-----HHCCCCCCCcCCCCCCHHHHHHHcCCH---HHHhhc
Confidence            99999999999998888766     889999999999999999999888776   555544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=7.2e-26  Score=204.69  Aligned_cols=159  Identities=25%  Similarity=0.203  Sum_probs=123.6

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.||++ +.++|.+|.+|+||||+|+..|+.+++++|++++.+. ...+. .+.+|||.|+..|+.++++.|+++++..
T Consensus        56 v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~-~~~~~L~~a~~~~~~~~~~~l~~~~~~~  132 (291)
T d1s70b_          56 VLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHV  132 (291)
T ss_dssp             HHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccc-cccccccccccccccchhhcccccCccc
Confidence            5666665 4668899999999999999999999999999998887 77777 8899999999999999999998876532


Q ss_pred             -----------------------------------------------------------cccccCCCCcHHHHHHHhccH
Q 041107           82 -----------------------------------------------------------CEVVDDRGWNVLHFAMVSFYA  102 (374)
Q Consensus        82 -----------------------------------------------------------~~~~d~~g~t~Lh~A~~~~~~  102 (374)
                                                                                 ....+..|.||||.|+..++.
T Consensus       133 ~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~  212 (291)
T d1s70b_         133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT  212 (291)
T ss_dssp             TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCCh
Confidence                                                                       012345677777777777777


Q ss_pred             HHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHH
Q 041107          103 RDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYR  172 (374)
Q Consensus       103 ~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~  172 (374)
                      ++++.|+    +.|.++|.+|.+|+||||+|++.|+.++++.|     ++.|+|++.+|++|+||+|+|.
T Consensus       213 ~~~~~Ll----~~g~din~~~~~g~TpL~~A~~~g~~~iv~lL-----l~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         213 EVLKLLI----QARYDVNIKDYDGWTPLHAAAHWGKEEACRIL-----VENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HHHHHHH----TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCTTTSCC
T ss_pred             hhhcccc----cceecccccccCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCcCCCCCCHHHHHH
Confidence            7777777    66777777777788888888877776666544     6777788877777888888774

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.7e-26  Score=185.24  Aligned_cols=153  Identities=18%  Similarity=0.164  Sum_probs=137.5

Q ss_pred             cHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhcc
Q 041107           22 TPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFY  101 (374)
Q Consensus        22 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  101 (374)
                      +|||+||..|+.++|+.|+++|+++ +.+|. +|+||||+|+ .|+.++++.|+++++++ +..+..|.++++.++.++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~-~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNG-FGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCT-TSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCC-cccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence            8999999999999999999999998 99999 9999999886 78999999999999996 8889999999999999999


Q ss_pred             HHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccc-cccccccCCCCChHHHHHhCCCccHH
Q 041107          102 ARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAK-AHFQATNKQNISAEHIYRYGFPDLEQ  180 (374)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g-~~~~~~n~~g~t~l~~a~~~~~~~~~  180 (374)
                      .+.++.++    ..+..++..|..|.+|||+|++.++.+.+..+     ++.+ .+.+.+|.+|+||+|+|...++.   
T Consensus        79 ~~~~~~l~----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L-----l~~~~~~~~~~d~~g~TpL~~A~~~~~~---  146 (156)
T d1ihba_          79 LDTLQTLL----EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL-----VKHTASNVGHRNHKGDTACDLARLYGRN---  146 (156)
T ss_dssp             HHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHSCCCTTCCCTTSCCHHHHHHHTTCH---
T ss_pred             cccccccc----cccccccccccccccccccccccccccccccc-----cccccccccccCCCCCCHHHHHHHcCCH---
Confidence            99999998    67788999999999999999999887777665     4444 58999999999999999887776   


Q ss_pred             HHHHHHHhcC
Q 041107          181 EIQELSKADG  190 (374)
Q Consensus       181 ~i~~~l~~~~  190 (374)
                      +++++|.+.|
T Consensus       147 ~iv~~Ll~~G  156 (156)
T d1ihba_         147 EVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            6777777643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=9.2e-26  Score=184.49  Aligned_cols=150  Identities=17%  Similarity=0.024  Sum_probs=135.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhc
Q 041107           21 WTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSF  100 (374)
Q Consensus        21 ~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  100 (374)
                      .||||.||+.|+.++|+.|+++|++. + .|. .|+||||+|+..++.++++.++...... ...+..+.+++|.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~-~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-ccc-CCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            49999999999999999999999987 4 677 9999999999999999999999988875 677888999999999999


Q ss_pred             cHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHH
Q 041107          101 YARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQ  180 (374)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~  180 (374)
                      +.+.++++.    ..+.+.+.+|.+|+||||+|+..|+.+.++.|     ++.|++++..|++|+||+|+|...++.   
T Consensus        79 ~~~~~~~l~----~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~l-----l~~gad~~~~d~~g~Tpl~~A~~~g~~---  146 (153)
T d1awcb_          79 HANIVEVLL----KHGADVNAKDMLKMTALHWATEHNHQEVVELL-----IKYGADVHTQSKFCKTAFDISIDNGNE---  146 (153)
T ss_dssp             CHHHHHHHH----TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---
T ss_pred             cceeeeccc----ccCCccccccccCchHHHhhhhcchhheeeec-----cccccCCcccCCCCCCHHHHHHHcCCH---
Confidence            999999998    77889999999999999999999998777755     899999999999999999999888877   


Q ss_pred             HHHHHH
Q 041107          181 EIQELS  186 (374)
Q Consensus       181 ~i~~~l  186 (374)
                      +++++|
T Consensus       147 eiv~lL  152 (153)
T d1awcb_         147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            555544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.5e-26  Score=207.86  Aligned_cols=155  Identities=19%  Similarity=0.186  Sum_probs=119.7

Q ss_pred             cccccc-CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCH---HHHHHHHHhCCCcccccc
Q 041107           11 SLTRER-DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDV---WMVQEIIDHCPECCEVVD   86 (374)
Q Consensus        11 ~~~~~~-d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~~d   86 (374)
                      .++|.+ |.+|+||||+||..|+.++|++|+++|+++ +.+|. .|+||||.|+..|+.   +.++.+++...+.....|
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~-~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCc-ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            356655 899999999999999999999999999999 89999 999999999987752   222333333333347789


Q ss_pred             CCCCcHHHHHHHhcc----HHH--------HHhHHhhcc---------------------------------cchhhhcc
Q 041107           87 DRGWNVLHFAMVSFY----ARD--------LKHLVDKYP---------------------------------AVRNLIFK  121 (374)
Q Consensus        87 ~~g~t~Lh~A~~~~~----~~~--------~~~Ll~~~~---------------------------------~~~~~~n~  121 (374)
                      ..|+||||.++..+.    ...        ++.+++...                                 ..+..+|.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence            999999999887632    222        222221100                                 01123789


Q ss_pred             cCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHH
Q 041107          122 KDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYR  172 (374)
Q Consensus       122 ~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~  172 (374)
                      +|.+|+||||+|++.|+..+++.|     ++.|+|+++.|++|+||+|+|+
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~L-----l~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDAL-----LDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHH-----HHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999998877766     8899999999999999999984

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=2.8e-25  Score=198.89  Aligned_cols=168  Identities=21%  Similarity=0.172  Sum_probs=143.9

Q ss_pred             hCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCC--------
Q 041107            8 KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP--------   79 (374)
Q Consensus         8 ~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~--------   79 (374)
                      ..|+++|.+|.+|+||||+|++.|+.+++++|+++|+++ +.+|. +|.||||+|...|+.++++.+.....        
T Consensus        62 ~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  139 (277)
T d2fo1e1          62 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  139 (277)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             HcCCCccccCCCCCeeecccccccccccccccccccccc-ccccc-cccccccchhhhcchhhhhhhhhccccccccccc
Confidence            457889999999999999999999999999999999998 89999 99999999999999998888755321        


Q ss_pred             --------------------------------------CccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcc
Q 041107           80 --------------------------------------ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK  121 (374)
Q Consensus        80 --------------------------------------~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~  121 (374)
                                                            ......+..|+||||.++..++.++++.++.   ..+.+.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~---~~~~~~~~  216 (277)
T d2fo1e1         140 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG---EKGSNKDK  216 (277)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH---HSCCCTTC
T ss_pred             ccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccc---cccccccc
Confidence                                                  0012345679999999999999999987653   55678899


Q ss_pred             cCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107          122 KDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       122 ~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      +|..|+||||+|++.|+.+.++.|     ++.|+|++.+|.+|+||+|+|.+.++.   ++++.|.+
T Consensus       217 ~d~~g~tpL~~A~~~g~~~iv~~L-----l~~gadin~~d~~G~T~L~~A~~~~~~---~iv~lL~~  275 (277)
T d2fo1e1         217 QDEDGKTPIMLAAQEGRIEVVMYL-----IQQGASVEAVDATDHTARQLAQANNHH---NIVDIFDR  275 (277)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHH-----HHTTCCSSCCCSSSCCHHHHHHHTTCH---HHHHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHH-----HHCcCCCCCcCCCCCCHHHHHHHcCCH---HHHHHHHH
Confidence            999999999999999988777755     789999999999999999999888876   66666553

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-25  Score=193.23  Aligned_cols=145  Identities=18%  Similarity=0.068  Sum_probs=115.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhh----cCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc-------------
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLE----ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC-------------   81 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~-------------   81 (374)
                      +|+||||+||+.|+.++++.|++    .|+++ +.+|. +|+||||+|+..|+.++++.|++++++.             
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNN-LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCC-CCCccceehhccccccccccccccccccccccccccccccc
Confidence            57888888888888887777764    66676 77777 8888888888888888888887776532             


Q ss_pred             ---------------------------------------------------------cccccCCCCcHHHHHHHhccHHH
Q 041107           82 ---------------------------------------------------------CEVVDDRGWNVLHFAMVSFYARD  104 (374)
Q Consensus        82 ---------------------------------------------------------~~~~d~~g~t~Lh~A~~~~~~~~  104 (374)
                                                                               ....+..|.++||.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence                                                                     01233457788888888888888


Q ss_pred             HHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhC
Q 041107          105 LKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYG  174 (374)
Q Consensus       105 ~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~  174 (374)
                      .+.++    +.+...+.+|.+|+||||+|++.|+.+.++.|     ++.|+|++.+|.+|+||+|+|.+.
T Consensus       160 ~~~~~----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L-----l~~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         160 VQLLL----QHGANVNAQMYSGSSALHSASGRGLLPLVRTL-----VRSGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             HHHHH----HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH-----HHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             hhhhh----hhccccccccccCcchHHHHHHcCCHHHHHHH-----HHCCCCCCCCCCCCCCHHHHHHhC
Confidence            88877    67788899999999999999999998777655     889999999999999999998543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=179.14  Aligned_cols=150  Identities=15%  Similarity=0.113  Sum_probs=131.9

Q ss_pred             cHHHHHHHcCCHHHHHHHhhc-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhc
Q 041107           22 TPLHYAVYLDRCFISKCLLEA-DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSF  100 (374)
Q Consensus        22 TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  100 (374)
                      +.||.||..|+.++|+.|++. +.++ +.+|. .|+||||+|+ .|+.+++++|++++.++ +..+..|.+|++.++..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~-~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP-DALNR-FGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCT-TSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC-CccCC-CCCccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            459999999999999999985 5666 89998 9999999986 48899999999999986 788899999999999999


Q ss_pred             cHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHH
Q 041107          101 YARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQ  180 (374)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~  180 (374)
                      +.++++.++    +.+.++|.+|.+|+||||+|++.|+.+.++ +     +..|++++.+|.+|+||+|+|...+..   
T Consensus        80 ~~~~~~~~l----~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~-~-----L~~~~~~~~~d~~G~TpL~~A~~~g~~---  146 (156)
T d1bd8a_          80 FLDTLKVLV----EHGADVNVPDGTGALPIHLAVQEGHTAVVS-F-----LAAESDLHRRDARGLTPLELALQRGAQ---  146 (156)
T ss_dssp             CHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHHTCHHHHH-H-----HHTTSCTTCCCTTSCCHHHHHHHSCCH---
T ss_pred             ccccccccc----ccccccccccCCCCeeeccccccccccccc-c-----ccccccccccCCCCCCHHHHHHHcCCH---
Confidence            999999998    778889999999999999999999876664 4     346899999999999999999888876   


Q ss_pred             HHHHHHHh
Q 041107          181 EIQELSKA  188 (374)
Q Consensus       181 ~i~~~l~~  188 (374)
                      ++.+.|.+
T Consensus       147 ~iv~~Ll~  154 (156)
T d1bd8a_         147 DLVDILQG  154 (156)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            66666654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=179.11  Aligned_cols=135  Identities=20%  Similarity=0.231  Sum_probs=124.6

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      +++||.+++.+++.+|..|+||||+|+. |+.+++++|++++.++ +.++. .|.+|++.++..++.++++.+++.++++
T Consensus        18 vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~   94 (156)
T d1bd8a_          18 VRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDT-SGTSPVHDAARTGFLDTLKVLVEHGADV   94 (156)
T ss_dssp             HHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccc-ccccc-cccccccccccccccccccccccccccc
Confidence            6788999999999999999999999874 8999999999999998 88888 9999999999999999999999999986


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                       +.+|..|+||||+|+..|+.+++++|+     .+++++.+|.+|+||||+|++.|+.++++.|
T Consensus        95 -n~~~~~~~t~L~~A~~~~~~~i~~~L~-----~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~L  152 (156)
T d1bd8a_          95 -NVPDGTGALPIHLAVQEGHTAVVSFLA-----AESDLHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             -CCCCTTSCCHHHHHHHHTCHHHHHHHH-----TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             -ccccCCCCeeecccccccccccccccc-----ccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence             788999999999999999999999885     4678999999999999999999997777644

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-24  Score=186.29  Aligned_cols=161  Identities=20%  Similarity=0.079  Sum_probs=129.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc------------------
Q 041107           20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC------------------   81 (374)
Q Consensus        20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~------------------   81 (374)
                      +.+.||.+|+.|+.+.++.+++.++...+.+|. .|+||||+||..|+.+++++|++.+...                  
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~-~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCC-CCCCHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            468899999999999999998876666699999 9999999999999988888777654421                  


Q ss_pred             --------------cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeee
Q 041107           82 --------------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDI  147 (374)
Q Consensus        82 --------------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L  147 (374)
                                    .+..|.+|+||||+|+.+++.+++++|+    +.|.+++.+|.+|.||||+|+..++......+  
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll----~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L--  155 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL----EGGANPDAKDHYEATAMHRAAAKGNLKMIHIL--  155 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH--
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCccchhhhhcCCcchhhhh--
Confidence                          2456788888888888888888888887    67778888888888888888888775555444  


Q ss_pred             ccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          148 VPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       148 ~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                         ...+.+++..|.+|+||+++|...+..   +++++|.+.|+..
T Consensus       156 ---~~~~~~i~~~d~~g~TpL~~Aa~~g~~---~~v~~LL~~Gad~  195 (223)
T d1uoha_         156 ---LYYKASTNIQDTEGNTPLHLACDEERV---EEAKLLVSQGASI  195 (223)
T ss_dssp             ---HHTTCCSCCCCTTCCCHHHHHHHTTCH---HHHHHHHHTTCCS
T ss_pred             ---ccccceeeeccCCCCceeccccccCcH---HHHHHHHHCCCCC
Confidence               678888888888888888888777665   6777777766653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.3e-24  Score=200.05  Aligned_cols=168  Identities=18%  Similarity=0.144  Sum_probs=145.2

Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 041107            9 KKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR   88 (374)
Q Consensus         9 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   88 (374)
                      ........+.+|.||||+|+..++.++++.+++.+... +..+. .|.||+|.|+..++.+++++|+++|+++ +..+..
T Consensus       220 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~-~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~  296 (408)
T d1n11a_         220 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRM  296 (408)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSS
T ss_pred             ccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccC-CCCChhhhhhhcCcHHHHHHHHHCCCcc-cccccc
Confidence            34445566777888888888888999999998888877 77888 9999999999999999999999999986 788889


Q ss_pred             CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChH
Q 041107           89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAE  168 (374)
Q Consensus        89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l  168 (374)
                      +.||||.++..+..++++.++    +.|.++|.+|.+|+||||+|++.|+.+.++.|     ++.|+|+|.+|++|+||+
T Consensus       297 ~~t~L~~~~~~~~~~~~~~ll----~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~L-----l~~GAd~n~~d~~G~t~L  367 (408)
T d1n11a_         297 GYTPLHVASHYGNIKLVKFLL----QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-----LKNGASPNEVSSDGTTPL  367 (408)
T ss_dssp             CCCHHHHHHHSSCSHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCSCCCCSSSCCHH
T ss_pred             ccccchhhcccCcceeeeeec----cccccccccCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCCCCCCCCHH
Confidence            999999999999999999998    78899999999999999999999998888766     899999999999999999


Q ss_pred             HHHHhCCCccHHHHHHHHHh
Q 041107          169 HIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       169 ~~a~~~~~~~~~~i~~~l~~  188 (374)
                      |+|...++..+.++++.+..
T Consensus       368 ~~A~~~~~~~iv~~L~~~~~  387 (408)
T d1n11a_         368 AIAKRLGYISVTDVLKVVTD  387 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHHHh
Confidence            99988877633344444444

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=4.4e-25  Score=172.77  Aligned_cols=107  Identities=15%  Similarity=0.016  Sum_probs=102.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhc
Q 041107           21 WTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSF  100 (374)
Q Consensus        21 ~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  100 (374)
                      .|||++|++.|+.++|++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~-~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLE-GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSS-SSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccc-ccccccccccccccccccccccccccee-eecccccccchhhhhhcC
Confidence            38999999999999999999999998 99999 9999999999999999999999999996 889999999999999999


Q ss_pred             cHHHHHhHHhhcccchhhhcccCCCCCcHHHHHH
Q 041107          101 YARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLA  134 (374)
Q Consensus       101 ~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~  134 (374)
                      +.+++++|+    +.|+++|.+|.+|+||||+|.
T Consensus        80 ~~~~v~~Ll----~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLL----SKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHH----TTCCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhhh----cccccceeeCCCCCCHHHHHh
Confidence            999999999    789999999999999999884

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-24  Score=170.44  Aligned_cols=119  Identities=15%  Similarity=0.085  Sum_probs=108.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCC-cHHHHHH
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGW-NVLHFAM   97 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~   97 (374)
                      .+.++||+||+.|+.++|++|+++|+++ +.+|. +|+||+|+|+ .|+.+++++|+++|+++ +..|..|. ||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~-~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNS-YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccc-cccccccccc-ccccccccccccccccc-cccccccccccccccc
Confidence            4679999999999999999999999999 99999 9999999775 79999999999999997 67777665 6999999


Q ss_pred             HhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           98 VSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        98 ~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                      ++|+.+++++|+    +.|.++|.+|.+|+||||+|++.|+.+.++.|
T Consensus        78 ~~g~~~~v~~Ll----~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          78 REGFLDTLVVLH----RAGARLDVRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHTCHHHHHHHH----HHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccc----ccccccccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999    77899999999999999999999987777654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=4.1e-24  Score=191.24  Aligned_cols=171  Identities=15%  Similarity=0.052  Sum_probs=139.5

Q ss_pred             ccccC-CCCCcHHHHHHHcCCHHHHHHH--------hhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 041107           13 TRERD-RHGWTPLHYAVYLDRCFISKCL--------LEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCE   83 (374)
Q Consensus        13 ~~~~d-~~g~TpLh~Aa~~g~~~~v~~L--------l~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~   83 (374)
                      +|..| ++|+||||+||..|+.++|+.|        ++.|+++ +.+|. +|+||||+|+..|+.+++++|+++|+++ +
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n  101 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDC-DENTPLMLAVLARRRRLVAYLMKAGADP-T  101 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS-C
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCC-CCCeeecccccccccccccccccccccc-c
Confidence            44455 4699999999999999888776        4568898 89999 9999999999999999999999999996 8


Q ss_pred             cccCCCCcHHHHHHHhccHHHHHhHHhhc-------------------------------------------ccchhhhc
Q 041107           84 VVDDRGWNVLHFAMVSFYARDLKHLVDKY-------------------------------------------PAVRNLIF  120 (374)
Q Consensus        84 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~-------------------------------------------~~~~~~~n  120 (374)
                      .+|.+|+||||.|+..++.++.+.+....                                           .......+
T Consensus       102 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d2fo1e1         102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  181 (277)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence            88999999999999999888777664311                                           01112234


Q ss_pred             ccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107          121 KKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       121 ~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      ..+.+|.||||+++..++......+ +   ...+.+.+.+|..|+||+|+|...+..   +++++|.+.|+..
T Consensus       182 ~~~~~g~t~L~~~~~~~~~~~~~~~-l---~~~~~~~~~~d~~g~tpL~~A~~~g~~---~iv~~Ll~~gadi  247 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSNMPIVKYL-V---GEKGSNKDKQDEDGKTPIMLAAQEGRI---EVVMYLIQQGASV  247 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHH-H---HHSCCCTTCCCTTCCCHHHHHHHHTCH---HHHHHHHHTTCCS
T ss_pred             ccccCCCCccccccccccccccccc-c---ccccccccccCCCCCCHHHHHHHcCCH---HHHHHHHHCcCCC
Confidence            5667899999999998876666544 4   678899999999999999999887776   7888888877653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-23  Score=186.59  Aligned_cols=184  Identities=21%  Similarity=0.150  Sum_probs=122.7

Q ss_pred             hHHHHhhCCccccccC-CCCCcHHHHHHHcCCHHHHHHHhhcCCccc--------------------------------c
Q 041107            2 PLLLLDKKKSLTRERD-RHGWTPLHYAVYLDRCFISKCLLEADKSAA--------------------------------L   48 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~--------------------------------~   48 (374)
                      ++.||++ +.++|.++ ..|+||||+|+..|+.+++++|++.+....                                .
T Consensus        21 vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (285)
T d1wdya_          21 VQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN   99 (285)
T ss_dssp             HHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhccccc
Confidence            5566655 46676554 579999999999999999999998654330                                0


Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc---------cccccCCCCcHHHHHHHhccHHHHHhHHhhc-------
Q 041107           49 ISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC---------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKY-------  112 (374)
Q Consensus        49 ~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~---------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~-------  112 (374)
                      ..+. .|.+++++|+..|+...++.+++...+.         ....+..|.||||.|++++..+++++|+++.       
T Consensus       100 ~~~~-~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~  178 (285)
T d1wdya_         100 ECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC  178 (285)
T ss_dssp             CBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC
T ss_pred             cccc-CCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccc
Confidence            1111 3344444444444444444444332221         1122344555555555555544444444210       


Q ss_pred             ---------------------------ccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCC
Q 041107          113 ---------------------------PAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNI  165 (374)
Q Consensus       113 ---------------------------~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~  165 (374)
                                                 .+.|+++|.+|.+|+||||.|++.|+.+.++.| |   ...|++++.+|.+|.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~l-L---~~~g~din~~d~~G~  254 (285)
T d1wdya_         179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL-L---EQEHIEINDTDSDGK  254 (285)
T ss_dssp             CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH-H---HSSSCCTTCCCTTSC
T ss_pred             cCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHH-H---HcCCCCCcCCCCCCC
Confidence                                       156778889999999999999999987777766 4   457999999999999


Q ss_pred             ChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          166 SAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       166 t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      ||||+|.+.++.   +++++|.+.|+...
T Consensus       255 TpL~~A~~~~~~---eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         255 TALLLAVELKLK---KIAELLCKRGASTD  280 (285)
T ss_dssp             CHHHHHHHTTCH---HHHHHHHHHSSCSC
T ss_pred             CHHHHHHHcCCH---HHHHHHHHCCCCCC
Confidence            999999988876   89999999888753

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.1e-23  Score=179.10  Aligned_cols=165  Identities=19%  Similarity=0.135  Sum_probs=129.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc--cccccCCCCcHHHHHHH
Q 041107           21 WTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC--CEVVDDRGWNVLHFAMV   98 (374)
Q Consensus        21 ~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~   98 (374)
                      .||||+||..|+.++++.|++.++...+.+|. +|+||||+|+..|+.+++++|+++++++  ....|..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCC-CCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            48999999999999999999966555599999 9999999999999999999999998764  23456677778888777


Q ss_pred             hccHHHHHhHHhhc-------------------------------ccchhhhcccCCCCCcHHHHHHhhccccccceeee
Q 041107           99 SFYARDLKHLVDKY-------------------------------PAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDI  147 (374)
Q Consensus        99 ~~~~~~~~~Ll~~~-------------------------------~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L  147 (374)
                      .+..++++.++...                               ...+...+.+|.+|+||||+|+..|+...++.| +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L-l  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL-C  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH-H
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc-c
Confidence            76665555443211                               145566677899999999999999987776665 3


Q ss_pred             ccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh-cCCCC
Q 041107          148 VPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA-DGSGQ  193 (374)
Q Consensus       148 ~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~-~~~~~  193 (374)
                         ...+.+++.+|.+|+||||+|...+..   +++++|.+ .|+..
T Consensus       159 ---~~~~~~in~~d~~g~TpLh~A~~~~~~---~~v~~Ll~~~gad~  199 (229)
T d1ixva_         159 ---GLGKSAVNWQDKQGWTPLFHALAEGHG---DAAVLLVEKYGAEY  199 (229)
T ss_dssp             ---TTTCCCSCCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHCCCS
T ss_pred             ---ccccccccccccccCCchhhhcccccH---HHHHHHHHhcCCCC
Confidence               333478999999999999999887776   67776664 45543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.89  E-value=5.7e-23  Score=185.40  Aligned_cols=165  Identities=18%  Similarity=0.075  Sum_probs=141.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107           19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV   98 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~   98 (374)
                      +|.||||.||+.|+.++|++|+++|+++ +.+|. +|+||||+|+.+|+.+++++|++++++. ...+..+.+|||.++.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~-~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI-NYANV-DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCC-CCCcHHHHHHhcCCceeeeeeccccccc-cccccccccccccccc
Confidence            4669999999999999999999999998 99999 9999999999999999999999999985 6778899999999999


Q ss_pred             hccHHHHHhHHhhcccc--------------------------------------------------------hhhhccc
Q 041107           99 SFYARDLKHLVDKYPAV--------------------------------------------------------RNLIFKK  122 (374)
Q Consensus        99 ~~~~~~~~~Ll~~~~~~--------------------------------------------------------~~~~n~~  122 (374)
                      .++.++++.+++.....                                                        .......
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            99999998887522000                                                        0012335


Q ss_pred             CCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          123 DVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       123 d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                      +.+|.||||+|+..|+...++.|     ++.|+++|.+|.+|+||||+|...++.   ++++.|.+.|+...
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~L-----l~~g~din~~~~~g~TpL~~A~~~g~~---~iv~lLl~~Gadv~  259 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLL-----IQARYDVNIKDYDGWTPLHAAAHWGKE---EACRILVENLCDME  259 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHH-----HTTTCCTTCCCTTCCCHHHHHHHTTCH---HHHHHHHHTTCCTT
T ss_pred             cCCCCChhhHHHHcCChhhhccc-----ccceecccccccCCCCHHHHHHHcCCH---HHHHHHHHCCCCCC
Confidence            67899999999999987777666     789999999999999999999888776   78888888877553

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.2e-24  Score=167.82  Aligned_cols=106  Identities=16%  Similarity=0.044  Sum_probs=100.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHh
Q 041107           56 MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAA  135 (374)
Q Consensus        56 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~  135 (374)
                      .|||++|+++|+.++++.|+++|+++ +.+|.+|+||||+|+.+++.+++++++    +.|.++|.+|.+|+||||+|++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll----~~g~din~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLL----LKGADINAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHH----HSSCTTTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccc----cccceeeecccccccchhhhhh
Confidence            48999999999999999999999996 889999999999999999999999998    7889999999999999999999


Q ss_pred             hccccccceeeeccccccccccccccCCCCChHHHH
Q 041107          136 VCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY  171 (374)
Q Consensus       136 ~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a  171 (374)
                      .|+.+.++.|     ++.|+|++.+|++|+||+|+|
T Consensus        78 ~~~~~~v~~L-----l~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          78 EGHVSCVKLL-----LSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             TTCCHHHHHH-----HTTCCCSSSSSSSTCCCCCTC
T ss_pred             cCchhhhhhh-----hcccccceeeCCCCCCHHHHH
Confidence            9987777666     889999999999999999998

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-23  Score=179.94  Aligned_cols=164  Identities=16%  Similarity=0.086  Sum_probs=133.3

Q ss_pred             CCCcHHHHHHHcCCHHHHH----HHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107           19 HGWTPLHYAVYLDRCFISK----CLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH   94 (374)
Q Consensus        19 ~g~TpLh~Aa~~g~~~~v~----~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   94 (374)
                      +|+||||+|+..|+.++++    .+...+.++ +.+|. +|+||||+|+..|+.+++++|++.|+++ +..|..|+||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~-~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCC-CCCccccccccccccccccccccccccc-cccccccccccc
Confidence            6999999999999965554    455577787 89999 9999999999999999999999999996 889999999999


Q ss_pred             HHHHhccHHHHHhHHhhccc--chhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc-CCCCChHHHH
Q 041107           95 FAMVSFYARDLKHLVDKYPA--VRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN-KQNISAEHIY  171 (374)
Q Consensus        95 ~A~~~~~~~~~~~Ll~~~~~--~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n-~~g~t~l~~a  171 (374)
                      .++.++..++++.+++....  .....+....+|+||||.|+..++......+     ...|.+++..+ .+|.||+|+|
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l-----~~~~~~~~~~~~~~G~T~L~~A  152 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL-----VSLGADVNAQEPCNGRTALHLA  152 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHH-----HHHTCCTTCCCTTTCCCHHHHH
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeee-----cccCcccccccccCCCCccccc
Confidence            99999999999999853311  2234556677899999999999876555544     67788887765 5799999999


Q ss_pred             HhCCCccHHHHHHHHHhcCCCC
Q 041107          172 RYGFPDLEQEIQELSKADGSGQ  193 (374)
Q Consensus       172 ~~~~~~~~~~i~~~l~~~~~~~  193 (374)
                      ...+..   +++++|.+.|+..
T Consensus       153 ~~~g~~---~~v~~Ll~~gad~  171 (221)
T d1iknd_         153 VDLQNP---DLVSLLLKCGADV  171 (221)
T ss_dssp             HHTTCH---HHHHHHHTTTCCS
T ss_pred             cccccH---HHHHHHHhcCCcc
Confidence            888876   8888888877654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-22  Score=164.86  Aligned_cols=135  Identities=20%  Similarity=0.191  Sum_probs=121.6

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|+++ +.+++.+|.+|+||||+|+ .|+.+++++|+++++++ +.++. .|.+|++.++..|+.+.++.|++.+.+.
T Consensus        17 v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~   92 (156)
T d1ihba_          17 LTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDR-TGFAVIHDAARAGFLDTLQTLLEFQADV   92 (156)
T ss_dssp             HHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHC-CCCcCccCCcccccccccc-ccccccccccccccccc-ccccc-cCcccccccccccccccccccccccccc
Confidence            4566665 6779999999999999886 79999999999999998 89998 9999999999999999999999999986


Q ss_pred             cccccCCCCcHHHHHHHhccHHHHHhHHhhcccch-hhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVR-NLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                       +..|..|.+|||.|+..++.+++++|+    +.+ .+.+.+|.+|+||||+|++.|+.++++.|
T Consensus        93 -~~~~~~~~~~l~~a~~~~~~~~~~~Ll----~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          93 -NIEDNEGNLPLHLAAKEGHLRVVEFLV----KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -ccccccccccccccccccccccccccc----ccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence             888999999999999999999999998    444 48899999999999999999987777654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=161.08  Aligned_cols=117  Identities=16%  Similarity=0.145  Sum_probs=104.8

Q ss_pred             cHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhcc
Q 041107           22 TPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFY  101 (374)
Q Consensus        22 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  101 (374)
                      ++||.||..|+.++|+.|+++|+++ +.+|+ +|+||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~-~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPND-EGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccc-cccccccccccccccccccccccccccc-ccccccCcccccccchhhH
Confidence            6799999999999999999999998 99999 9999999999999999999999999996 8899999999999999999


Q ss_pred             HHHHHhHHhhcccchhhhcccCC-CCCcHHHHH--Hhhcccccccee
Q 041107          102 ARDLKHLVDKYPAVRNLIFKKDV-KGNTPFHVL--AAVCRQSYDARY  145 (374)
Q Consensus       102 ~~~~~~Ll~~~~~~~~~~n~~d~-~G~T~LH~A--~~~g~~~~~~~l  145 (374)
                      .+++++|+    +.|++++.+|. +|+||++++  ++.|+.++++.|
T Consensus        80 ~~~v~~Ll----~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1          80 VQVCKFLV----ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             HHHHHHHH----HTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             HHHHHHHH----HcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHH
Confidence            99999999    78899998774 589998876  455665555544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-21  Score=185.17  Aligned_cols=172  Identities=19%  Similarity=0.111  Sum_probs=140.9

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC   81 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   81 (374)
                      ++.|+++ +..+|.+|.+|+||||+|+..|+.+++++|+++|+++ +.++. +|+||||+|+..|+.++++.|+..+++.
T Consensus        16 v~~Ll~~-g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~~~~~   92 (408)
T d1n11a_          16 VKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAK-DDQTPLHCAARIGHTNMVKLLLENNANP   92 (408)
T ss_dssp             HHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             HHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            5566655 5778899999999999999999999999999999988 88888 9999999999999999999988765532


Q ss_pred             --------------------------------cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcH
Q 041107           82 --------------------------------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTP  129 (374)
Q Consensus        82 --------------------------------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~  129 (374)
                                                      ....|.++.++++.|+..++.++++.|+    +.+.+++..|.+|.||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll----~~~~~~~~~~~~~~~~  168 (408)
T d1n11a_          93 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL----ERDAHPNAAGKNGLTP  168 (408)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCSSCCCH
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHH----HcCCCCCcCCCcCchH
Confidence                                            1334677889999999999999999888    7788899999999999


Q ss_pred             HHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107          130 FHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       130 LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      ||+|+..|+...++.|     +..|++++..+..|.||++.+......   .....+..
T Consensus       169 L~~A~~~~~~~~~~~L-----l~~g~~~~~~~~~~~t~l~~~~~~~~~---~~~~~l~~  219 (408)
T d1n11a_         169 LHVAVHHNNLDIVKLL-----LPRGGSPHSPAWNGYTPLHIAAKQNQV---EVARSLLQ  219 (408)
T ss_dssp             HHHHHHTTCHHHHHHH-----GGGTCCSCCCCTTCCCHHHHHHHTTCH---HHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH-----HhcCCcccccCCCCCCcchhhhccchh---hhhhhhhh
Confidence            9999998887666555     788999999999999999988766554   44444433

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1e-21  Score=160.01  Aligned_cols=134  Identities=19%  Similarity=0.200  Sum_probs=120.1

Q ss_pred             ChHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107            1 VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE   80 (374)
Q Consensus         1 i~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   80 (374)
                      +++.||+.+. ..+ .|..|+||||+|+..++.++++.++...... ...+. .+.++++.++...+.++++.++.++++
T Consensus        17 ~v~~LL~~ga-~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (153)
T d1awcb_          17 EVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTK-VDRTPLHMAASEGHANIVEVLLKHGAD   92 (153)
T ss_dssp             HHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             HHHHHHHcCC-Ccc-cccCCCccccccccccccccccccccccccc-ccccc-ccccccccccccccceeeecccccCCc
Confidence            3677888765 444 6899999999999999999999999987777 55666 888999999999999999999999998


Q ss_pred             ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccc
Q 041107           81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDA  143 (374)
Q Consensus        81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~  143 (374)
                      . ..+|.+|+||||+|+..|+.+++++|+    +.|+++|.+|.+|+||||+|+..|+.++++
T Consensus        93 ~-~~~~~~g~T~L~~A~~~g~~~iv~~ll----~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_          93 V-NAKDMLKMTALHWATEHNHQEVVELLI----KYGADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             T-TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             c-ccccccCchHHHhhhhcchhheeeecc----ccccCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            6 788999999999999999999999998    789999999999999999999999876654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.4e-22  Score=156.55  Aligned_cols=121  Identities=16%  Similarity=0.009  Sum_probs=107.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCC-cHHHH
Q 041107           54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGN-TPFHV  132 (374)
Q Consensus        54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~-T~LH~  132 (374)
                      .+.++||+|++.|+.+++++|+++|+++ +.+|..|+||||+|+ .|+.+++++|+    +.|+++|.+|..|. ||||+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLL----LHGAEPNCADPATLTRPVHD   75 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHH----TTTCCCCCCCTTTCCCHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccc----cccccccccccccccccccc
Confidence            5679999999999999999999999996 889999999999775 68999999999    78899999999876 69999


Q ss_pred             HHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107          133 LAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA  188 (374)
Q Consensus       133 A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~  188 (374)
                      |++.|+.+.++.|     ++.|++++.+|.+|+||+|+|...++.   ++.++|..
T Consensus        76 A~~~g~~~~v~~L-----l~~ga~~~~~d~~G~T~l~~A~~~g~~---~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGFLDTLVVL-----HRAGARLDVRDAWGRLPVDLAEELGHR---DVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHHHH-----HHHTCCSSCCCTTCCCHHHHHHHHTCH---HHHHHHSS
T ss_pred             ccccccccccccc-----cccccccccccCCCCCHHHHHHHcCCH---HHHHHHHh
Confidence            9999987777765     788999999999999999999887776   67766654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.2e-21  Score=153.12  Aligned_cols=107  Identities=21%  Similarity=0.149  Sum_probs=97.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHh
Q 041107           56 MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAA  135 (374)
Q Consensus        56 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~  135 (374)
                      .++||.||..|+.++++.|+++|+++ +.+|.+|+||||+|+..++.+++++|+    +.+.++|.+|.+|+||||+|+.
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll----~~g~~~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLV----QFGVNVNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccc----ccccccccccccCcccccccch
Confidence            36899999999999999999999996 899999999999999999999999998    7789999999999999999999


Q ss_pred             hccccccceeeeccccccccccccccC-CCCChHHHHH
Q 041107          136 VCRQSYDARYDIVPWKIAKAHFQATNK-QNISAEHIYR  172 (374)
Q Consensus       136 ~g~~~~~~~l~L~~~l~~g~~~~~~n~-~g~t~l~~a~  172 (374)
                      .|+.+.++.|     ++.|++++..+. +|+||++++.
T Consensus        77 ~g~~~~v~~L-----l~~ga~v~~~~~~~~~~~~~~~~  109 (130)
T d1ycsb1          77 CNNVQVCKFL-----VESGAAVFAMTYSDMQTAADKCE  109 (130)
T ss_dssp             TTCHHHHHHH-----HHTTCCTTCCCSSSCCCHHHHCC
T ss_pred             hhHHHHHHHH-----HHcCCCcccccCCCCCCHHHHHH
Confidence            9998777765     889999998875 5899998863

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3e-21  Score=165.47  Aligned_cols=134  Identities=19%  Similarity=0.101  Sum_probs=115.7

Q ss_pred             hHHHHh---hCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcc--------------------------------
Q 041107            2 PLLLLD---KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSA--------------------------------   46 (374)
Q Consensus         2 ~~~lL~---~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~--------------------------------   46 (374)
                      ++.|++   ..+..++.+|..|+||||+|+..|+.++++.|++++++.                                
T Consensus        19 v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   98 (228)
T d1k1aa_          19 VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP   98 (228)
T ss_dssp             HHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccc
Confidence            445543   567889999999999999999999999999999976544                                


Q ss_pred             --------------------------------------cccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 041107           47 --------------------------------------ALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR   88 (374)
Q Consensus        47 --------------------------------------~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   88 (374)
                                                            ....+ ..|.+|||.|+..+..++++.+++.+.+. ..+|..
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d~~  176 (228)
T d1k1aa_          99 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI-KSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYS  176 (228)
T ss_dssp             TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTT
T ss_pred             ccccccccccccccccccccccccchhhhhhhccccccccccc-cchhhHHHHHHHhhhhhhhhhhhhhcccc-cccccc
Confidence                                                  01122 27889999999999999999999999885 788999


Q ss_pred             CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccc
Q 041107           89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSY  141 (374)
Q Consensus        89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~  141 (374)
                      |.||||+|+.+|+.+++++|+    +.|+++|.+|.+|+||||+|++.|+.++
T Consensus       177 g~t~L~~A~~~g~~~~v~~Ll----~~Gad~n~~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         177 GSSALHSASGRGLLPLVRTLV----RSGADSSLKNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             CcchHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHhCCCccc
Confidence            999999999999999999999    7899999999999999999999887443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.83  E-value=1.1e-22  Score=188.89  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             HhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccC-CCCchHHHHHHHcCCHHHHHHHHHhCCCcc--
Q 041107            6 LDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDE-DRKMTALHLAAGRGDVWMVQEIIDHCPECC--   82 (374)
Q Consensus         6 L~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--   82 (374)
                      |...+..+|.+|.+|+||||+||+.|+.++|++|+++|+++ +..+. .+|+||||+||.+|+.+++++|++.+++..  
T Consensus       112 L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~  190 (346)
T d2ajaa1         112 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA  190 (346)
T ss_dssp             C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHH
T ss_pred             HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHcCCccccc
Confidence            55667778888888888888888888888888888888777 55542 157888888888888888888888776532  


Q ss_pred             ccccCCCCcHHHHHHHhccHHHHHhHHh
Q 041107           83 EVVDDRGWNVLHFAMVSFYARDLKHLVD  110 (374)
Q Consensus        83 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~  110 (374)
                      +..+.+|.||+|.|+++|+.+++++|++
T Consensus       191 ~~~~~~~~t~l~~A~~~g~~~iv~~Ll~  218 (346)
T d2ajaa1         191 MIQAENYYAFRWAAVGRGHHNVINFLLD  218 (346)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             ccccCCCcchhhHHhhcCHHHHHHHHHh
Confidence            2334556677777778888888888873

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=9.7e-21  Score=154.60  Aligned_cols=116  Identities=20%  Similarity=0.191  Sum_probs=99.3

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCcccccc------cCCCCchHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHH
Q 041107           23 PLHYAVYLDRCFISKCLLEADKSAALIS------DEDRKMTALHLAAGR---GDVWMVQEIIDHCPECCEVVDDRGWNVL   93 (374)
Q Consensus        23 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L   93 (374)
                      .|+.|++.++.+.+..++..|.++ ..+      +. .|+||||+|++.   |+.+++++|+++|+++ +.+|.+|+|||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~-~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpL   85 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDL-TEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TSBCCCSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCc-CCCCCcccCCC-CCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccc
Confidence            355778889999999998888776 332      45 789999999974   6789999999999986 88999999999


Q ss_pred             HHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107           94 HFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY  145 (374)
Q Consensus        94 h~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l  145 (374)
                      |+|+.+|+.+++++|+    +.|++++.+|.+|+||||+|++.|+.+++..|
T Consensus        86 h~A~~~~~~~~v~~Ll----~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L  133 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLL----RGKASIEIANESGETPLDIAKRLKHEHCEELL  133 (154)
T ss_dssp             HHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccccc----ccCccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999998    77899999999999999999999887666654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.83  E-value=8.2e-23  Score=189.69  Aligned_cols=145  Identities=9%  Similarity=0.013  Sum_probs=115.3

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHH---HhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc--
Q 041107           12 LTRERDRHGWTPLHYAVYLDRCFISKC---LLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD--   86 (374)
Q Consensus        12 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~---Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--   86 (374)
                      .++.+|.+|.||||+||+.|+.+++++   |++.|+++ +.+|. +|+||||+||++|+.+++++|++.|++. +..|  
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~-~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~  158 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQ  158 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHS
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccc
Confidence            345778899999999999999877665   78899998 99999 9999999999999999999999999986 5544  


Q ss_pred             CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCC
Q 041107           87 DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNI  165 (374)
Q Consensus        87 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~  165 (374)
                      .+|+||||+|+++|+.+++++|++.. ......+..+.+|.||+|.|+..|+.++++.|     ++.|++++..+..+.
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~L-----l~~ga~~~~~~~~~~  231 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWAAVGRGHHNVINFL-----LDCPVMLAYAEIHEF  231 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHH-----TTSHHHHHHHHHCTT
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcC-CcccccccccCCCcchhhHHhhcCHHHHHHHH-----HhCCCCcchHHHHHH
Confidence            56999999999999999999999432 11223455667788889999999998877766     788988876544433

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.7e-21  Score=169.97  Aligned_cols=139  Identities=17%  Similarity=0.091  Sum_probs=121.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHhh-cCCcccccccCCCCchHHHHHHHc----CCHHHHHHHHHhCCCccccccC
Q 041107           13 TRERDRHGWTPLHYAVYLDRCFISKCLLE-ADKSAALISDEDRKMTALHLAAGR----GDVWMVQEIIDHCPECCEVVDD   87 (374)
Q Consensus        13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~tpLh~Aa~~----g~~~~v~~Ll~~~~~~~~~~d~   87 (374)
                      .+..+..|.||||+|++.|+.+++++|++ .+.++ +.++. .|.++++.+...    +..++++.|+++|+++ +.+|.
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~  217 (285)
T d1wdya_         141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGE  217 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCT
T ss_pred             hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccC-CCCcccccccccccchHHHHHHHHHHHCCCCC-CccCC
Confidence            34556789999999999999999999997 47777 88888 899888876543    3457999999999996 78899


Q ss_pred             CCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccC
Q 041107           88 RGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNK  162 (374)
Q Consensus        88 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~  162 (374)
                      .|+||||+|+++++.+++++|++   ..|.++|.+|.+|+||||+|++.|+.+.++.|     ++.|+|+|+.|.
T Consensus       218 ~g~t~L~~a~~~~~~~~v~~lL~---~~g~din~~d~~G~TpL~~A~~~~~~eiv~~L-----l~~GAd~n~~d~  284 (285)
T d1wdya_         218 RGKTPLILAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLLAVELKLKKIAELL-----CKRGASTDCGDL  284 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHH---SSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHSSCSCCSSC
T ss_pred             CCCCccchhhhcCcHHHHHHHHH---cCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCcccC
Confidence            99999999999999999999984   35789999999999999999999998877765     899999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=6.8e-20  Score=149.49  Aligned_cols=92  Identities=17%  Similarity=0.102  Sum_probs=86.6

Q ss_pred             cCCCCCcHHHHHHHc---CCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH
Q 041107           16 RDRHGWTPLHYAVYL---DRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNV   92 (374)
Q Consensus        16 ~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~   92 (374)
                      .+..|+||||+|++.   |+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tp  117 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTG-KGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETP  117 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhh-hhccccccccccccccccccccccCccc-cccCCCCCCH
Confidence            367899999999985   6789999999999998 99999 9999999999999999999999999997 8899999999


Q ss_pred             HHHHHHhccHHHHHhHHh
Q 041107           93 LHFAMVSFYARDLKHLVD  110 (374)
Q Consensus        93 Lh~A~~~~~~~~~~~Ll~  110 (374)
                      ||+|+++|+.+++++|++
T Consensus       118 L~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1         118 LDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHH
Confidence            999999999999999984

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=6.1e-18  Score=144.29  Aligned_cols=134  Identities=24%  Similarity=0.158  Sum_probs=113.9

Q ss_pred             hHHHHhhCCccccccCCCCCcHHHHHHHcCCH----------------------------------HHHHHHhhcCCccc
Q 041107            2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRC----------------------------------FISKCLLEADKSAA   47 (374)
Q Consensus         2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~----------------------------------~~v~~Ll~~~~~~~   47 (374)
                      ++.|+ ..+..++.+|..+.++++.++..++.                                  ...+.|.+.+.++ 
T Consensus        39 v~~Ll-~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-  116 (209)
T d1ot8a_          39 AKRLL-DAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-  116 (209)
T ss_dssp             HHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-
T ss_pred             HHHHH-hhccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc-
Confidence            34444 45566888888888888888876543                                  3355666667777 


Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCC
Q 041107           48 LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGN  127 (374)
Q Consensus        48 ~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~  127 (374)
                      +.++. .|+||||+++..|..++++.+++.+.+. +..|.+|.||||.|+.+|+.++++.|+    +.|+++|.+|.+|+
T Consensus       117 ~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~~~~v~~Ll----~~gad~n~~d~~g~  190 (209)
T d1ot8a_         117 NAADN-SGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALL----DNFANREITDHMDR  190 (209)
T ss_dssp             TCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSC
T ss_pred             cccCC-CCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccHHHHHHHHH----HCCCCCCCcCCCCC
Confidence            77888 9999999999999999999999999986 888999999999999999999999999    78899999999999


Q ss_pred             cHHHHHHhhccccccc
Q 041107          128 TPFHVLAAVCRQSYDA  143 (374)
Q Consensus       128 T~LH~A~~~g~~~~~~  143 (374)
                      ||||+|++.|+.++++
T Consensus       191 Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         191 LPRDVASERLHHDIVR  206 (209)
T ss_dssp             CHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHcCCHHHHh
Confidence            9999999999876664

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.4e-18  Score=155.07  Aligned_cols=140  Identities=16%  Similarity=0.122  Sum_probs=102.3

Q ss_pred             cCCcccccc-cCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccH---HHHHhHHhhcccchh
Q 041107           42 ADKSAALIS-DEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYA---RDLKHLVDKYPAVRN  117 (374)
Q Consensus        42 ~~~~~~~~~-d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~---~~~~~Ll~~~~~~~~  117 (374)
                      .+.++ +.. |. +|+||||+||..|+.+++++|+++|+++ +.+|..|+||||.||..++.   +.++.+++   ....
T Consensus        95 ~~~dv-n~~~D~-~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~---~l~~  168 (301)
T d1sw6a_          95 TQLNL-NIPVDE-HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLD---YLYP  168 (301)
T ss_dssp             SCCCS-CSCCST-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH---HHGG
T ss_pred             cCCCc-CcCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHH---HHhh
Confidence            34555 444 77 9999999999999999999999999996 78999999999999987542   12222221   1134


Q ss_pred             hhcccCCCCCcHHHHHHhhccccccc-----------eeeeccccc----------------------------------
Q 041107          118 LIFKKDVKGNTPFHVLAAVCRQSYDA-----------RYDIVPWKI----------------------------------  152 (374)
Q Consensus       118 ~~n~~d~~G~T~LH~A~~~g~~~~~~-----------~l~L~~~l~----------------------------------  152 (374)
                      .++.+|..|+||||+++..+......           .+ +   ..                                  
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~-l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW-I---VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL  244 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHH-H---HHGGGCCEEEC----------------CHHHHHCSH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHH-H---HhcCCcchhcccccccchhHHHHhcchHHHHHHHhh
Confidence            56778999999999988655421100           00 0   00                                  


Q ss_pred             ---cccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107          153 ---AKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY  194 (374)
Q Consensus       153 ---~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~  194 (374)
                         .+..+|.+|.+|+||||+|.+.++.   +++++|.+.|+...
T Consensus       245 ~~~~~~~in~~D~~G~TpLh~A~~~g~~---~iv~~Ll~~GAd~~  286 (301)
T d1sw6a_         245 KWIIANMLNAQDSNGDTCLNIAARLGNI---SIVDALLDYGADPF  286 (301)
T ss_dssp             HHHHHHTTTCCCTTSCCHHHHHHHHCCH---HHHHHHHHTTCCTT
T ss_pred             HHHHhcCccCCCCCCCCHHHHHHHcCCH---HHHHHHHHCCCCCC
Confidence               0112688999999999999988877   88999999887653